Query 005123
Match_columns 713
No_of_seqs 1065 out of 3189
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 2.8E-44 9.6E-49 396.6 42.9 286 138-425 102-409 (410)
2 3ow8_A WD repeat-containing pr 100.0 2.4E-43 8.1E-48 376.4 43.8 288 136-425 24-319 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 1.3E-42 4.3E-47 373.1 46.8 286 136-424 47-340 (340)
4 2ynn_A Coatomer subunit beta'; 100.0 1.2E-42 4.3E-47 367.1 44.9 289 137-427 6-302 (304)
5 2pbi_B Guanine nucleotide-bind 100.0 1.1E-41 3.7E-46 368.4 45.1 287 136-424 56-354 (354)
6 4ery_A WD repeat-containing pr 100.0 3E-41 1E-45 356.3 46.1 290 136-426 15-311 (312)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-41 1E-45 363.3 43.0 293 137-430 8-338 (345)
8 3iz6_a 40S ribosomal protein R 100.0 3.8E-42 1.3E-46 375.3 36.0 292 136-428 58-376 (380)
9 4gqb_B Methylosome protein 50; 100.0 2.3E-41 7.9E-46 365.0 38.7 283 142-428 28-332 (344)
10 3frx_A Guanine nucleotide-bind 100.0 1.6E-40 5.6E-45 353.5 44.4 289 135-427 8-317 (319)
11 1nr0_A Actin interacting prote 100.0 1.1E-40 3.7E-45 387.0 45.4 340 88-430 77-570 (611)
12 4g56_B MGC81050 protein; prote 100.0 2.5E-41 8.6E-46 366.1 35.9 289 141-432 39-348 (357)
13 1erj_A Transcriptional repress 100.0 6.1E-40 2.1E-44 359.5 45.8 282 142-427 62-389 (393)
14 2hes_X YDR267CP; beta-propelle 100.0 2.7E-40 9.2E-45 353.6 41.8 287 137-427 7-328 (330)
15 2xzm_R RACK1; ribosome, transl 100.0 3.1E-39 1.1E-43 346.8 43.9 287 136-427 13-340 (343)
16 3ow8_A WD repeat-containing pr 100.0 2.7E-39 9.3E-44 344.9 40.3 246 138-384 74-319 (321)
17 4aow_A Guanine nucleotide-bind 100.0 1.2E-38 4.2E-43 338.0 43.7 290 136-428 30-338 (340)
18 2ymu_A WD-40 repeat protein; u 100.0 1.3E-38 4.5E-43 364.2 46.5 323 90-424 241-577 (577)
19 1nr0_A Actin interacting prote 100.0 6.6E-39 2.2E-43 372.0 44.3 287 139-428 54-398 (611)
20 3zwl_B Eukaryotic translation 100.0 2.7E-38 9.1E-43 338.0 45.6 291 134-428 22-347 (369)
21 1vyh_C Platelet-activating fac 100.0 2.9E-39 9.8E-44 356.5 36.7 246 139-385 145-410 (410)
22 1sq9_A Antiviral protein SKI8; 100.0 9.9E-39 3.4E-43 347.0 38.0 288 136-427 8-395 (397)
23 1gxr_A ESG1, transducin-like e 100.0 8.9E-38 3E-42 330.1 42.2 281 139-425 46-335 (337)
24 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-37 5.1E-42 325.2 42.6 285 135-430 9-299 (313)
25 1k8k_C P40, ARP2/3 complex 41 100.0 3.4E-38 1.2E-42 338.9 37.3 286 141-428 5-362 (372)
26 3dm0_A Maltose-binding peripla 100.0 9.7E-38 3.3E-42 367.2 44.1 289 136-427 374-693 (694)
27 3k26_A Polycomb protein EED; W 100.0 1.8E-38 6E-43 339.5 34.3 287 137-426 11-365 (366)
28 3ei3_B DNA damage-binding prot 100.0 6.5E-38 2.2E-42 340.2 38.9 286 136-427 65-382 (383)
29 4gqb_B Methylosome protein 50; 100.0 5.6E-38 1.9E-42 338.6 36.5 245 142-388 80-333 (344)
30 3i2n_A WD repeat-containing pr 100.0 5.1E-38 1.7E-42 335.2 35.6 292 135-428 9-354 (357)
31 2ymu_A WD-40 repeat protein; u 100.0 9.2E-37 3.2E-41 348.9 48.2 325 90-426 200-538 (577)
32 1r5m_A SIR4-interacting protei 100.0 1.7E-37 6E-42 338.3 39.8 282 141-426 105-424 (425)
33 2pm9_A Protein WEB1, protein t 100.0 8.3E-39 2.8E-43 349.5 28.5 287 142-428 65-415 (416)
34 1got_B GT-beta; complex (GTP-b 100.0 5.4E-37 1.8E-41 329.2 40.9 243 139-383 92-340 (340)
35 3dwl_C Actin-related protein 2 100.0 6.2E-39 2.1E-43 346.8 21.3 281 142-425 9-377 (377)
36 2ynn_A Coatomer subunit beta'; 100.0 2.1E-36 7.1E-41 319.4 39.3 252 177-429 4-261 (304)
37 3vl1_A 26S proteasome regulato 100.0 6.3E-37 2.2E-41 335.7 36.7 281 145-427 98-419 (420)
38 4e54_B DNA damage-binding prot 100.0 1.3E-37 4.4E-42 345.5 29.3 288 139-428 114-431 (435)
39 3vl1_A 26S proteasome regulato 100.0 3.6E-37 1.2E-41 337.6 32.1 283 146-430 58-368 (420)
40 1r5m_A SIR4-interacting protei 100.0 2.3E-36 7.9E-41 329.4 37.7 284 141-429 42-363 (425)
41 1pgu_A Actin interacting prote 100.0 1.2E-35 4.1E-40 341.0 45.5 334 90-427 86-614 (615)
42 3frx_A Guanine nucleotide-bind 100.0 7.6E-36 2.6E-40 317.5 40.7 245 138-386 59-317 (319)
43 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.4E-36 1.2E-40 323.8 38.4 251 140-390 57-339 (345)
44 4g56_B MGC81050 protein; prote 100.0 7.1E-37 2.4E-41 331.1 31.6 251 140-392 90-349 (357)
45 3gre_A Serine/threonine-protei 100.0 9.8E-37 3.3E-41 336.9 32.8 288 134-424 53-437 (437)
46 3v7d_B Cell division control p 100.0 3.2E-35 1.1E-39 327.3 45.2 285 137-431 114-425 (464)
47 2pbi_B Guanine nucleotide-bind 100.0 9.2E-36 3.2E-40 321.9 39.5 244 139-383 101-354 (354)
48 2pm7_B Protein transport prote 100.0 7.4E-36 2.5E-40 314.1 37.0 248 139-387 4-286 (297)
49 2pm9_A Protein WEB1, protein t 100.0 2.7E-37 9.3E-42 337.5 26.7 286 144-431 12-341 (416)
50 4aez_A CDC20, WD repeat-contai 100.0 9.8E-36 3.4E-40 326.3 39.2 286 140-431 87-384 (401)
51 3mkq_A Coatomer beta'-subunit; 100.0 1.4E-35 4.6E-40 353.4 43.3 291 137-429 6-304 (814)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7E-35 2.4E-39 323.6 45.6 278 138-428 153-443 (445)
53 1gxr_A ESG1, transducin-like e 100.0 7.7E-36 2.6E-40 315.2 36.1 284 143-431 8-300 (337)
54 1erj_A Transcriptional repress 100.0 2.5E-35 8.7E-40 322.7 40.9 243 143-386 122-389 (393)
55 4ery_A WD repeat-containing pr 100.0 3.5E-35 1.2E-39 309.7 39.7 246 139-385 60-311 (312)
56 3dw8_B Serine/threonine-protei 100.0 4.9E-36 1.7E-40 331.1 34.5 281 142-425 26-444 (447)
57 2hes_X YDR267CP; beta-propelle 100.0 2.2E-35 7.4E-40 315.5 37.5 244 142-386 56-328 (330)
58 3v7d_B Cell division control p 100.0 7.4E-35 2.5E-39 324.4 43.3 281 137-425 155-461 (464)
59 2xzm_R RACK1; ribosome, transl 100.0 4.6E-35 1.6E-39 314.3 38.6 246 137-386 69-340 (343)
60 1p22_A F-BOX/WD-repeat protein 100.0 2.4E-35 8.3E-40 326.8 36.9 278 140-430 129-417 (435)
61 4gga_A P55CDC, cell division c 100.0 2.7E-34 9.1E-39 317.1 44.0 279 145-430 106-398 (420)
62 3bg1_A Protein SEC13 homolog; 100.0 3.5E-36 1.2E-40 319.6 27.9 252 135-387 4-294 (316)
63 3iz6_a 40S ribosomal protein R 100.0 4.3E-36 1.5E-40 327.4 28.7 250 138-388 102-377 (380)
64 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-34 6.4E-39 320.2 42.0 280 138-430 112-394 (445)
65 4a11_B DNA excision repair pro 100.0 1.1E-34 3.7E-39 314.9 39.0 292 139-432 38-370 (408)
66 2pm7_B Protein transport prote 100.0 6.3E-35 2.1E-39 307.0 36.0 250 180-429 3-287 (297)
67 3sfz_A APAF-1, apoptotic pepti 100.0 6.9E-35 2.4E-39 363.9 42.4 247 138-385 609-912 (1249)
68 3f3f_A Nucleoporin SEH1; struc 100.0 4.3E-35 1.5E-39 309.1 34.1 252 138-390 5-341 (351)
69 1yfq_A Cell cycle arrest prote 100.0 8.9E-35 3.1E-39 308.8 35.7 277 140-425 7-322 (342)
70 2j04_B YDR362CP, TAU91; beta p 100.0 5.5E-36 1.9E-40 340.7 25.9 273 154-428 171-518 (524)
71 4h5i_A Guanine nucleotide-exch 100.0 5.6E-35 1.9E-39 317.4 32.6 279 144-427 14-343 (365)
72 2aq5_A Coronin-1A; WD40 repeat 100.0 1.9E-35 6.5E-40 323.7 29.1 281 146-427 36-342 (402)
73 1sq9_A Antiviral protein SKI8; 100.0 1.6E-34 5.4E-39 313.9 34.4 247 139-387 57-396 (397)
74 4ggc_A P55CDC, cell division c 100.0 1.7E-33 5.9E-38 295.4 41.2 274 147-427 28-315 (318)
75 3jrp_A Fusion protein of prote 100.0 1.9E-34 6.5E-39 309.7 33.0 251 138-389 5-290 (379)
76 3dm0_A Maltose-binding peripla 100.0 7.3E-34 2.5E-38 334.2 39.9 246 137-385 423-692 (694)
77 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-33 6E-38 351.3 44.7 290 138-430 651-1077(1249)
78 1pgu_A Actin interacting prote 100.0 9.5E-34 3.2E-38 325.2 39.0 280 139-426 58-365 (615)
79 3mkq_A Coatomer beta'-subunit; 100.0 1.7E-33 5.7E-38 335.3 42.4 290 138-427 49-386 (814)
80 4aez_A CDC20, WD repeat-contai 100.0 1.7E-33 5.7E-38 308.6 39.1 261 142-406 132-400 (401)
81 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-33 5.3E-38 340.8 40.6 283 142-429 56-607 (902)
82 3mmy_A MRNA export factor; mRN 100.0 1.4E-33 4.8E-38 301.2 35.3 282 138-425 33-344 (368)
83 4aow_A Guanine nucleotide-bind 100.0 1E-32 3.5E-37 292.3 41.5 249 137-388 79-339 (340)
84 3zwl_B Eukaryotic translation 100.0 8E-33 2.7E-37 295.5 40.9 247 139-388 69-348 (369)
85 3bg1_A Protein SEC13 homolog; 100.0 1E-34 3.6E-39 308.3 26.0 249 181-429 8-295 (316)
86 3k26_A Polycomb protein EED; W 100.0 3.7E-34 1.3E-38 305.9 29.1 241 142-385 67-365 (366)
87 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.8E-33 1.3E-37 310.7 36.4 283 145-431 5-395 (450)
88 1k8k_C P40, ARP2/3 complex 41 100.0 3.4E-33 1.2E-37 299.9 34.6 250 138-388 46-363 (372)
89 4gga_A P55CDC, cell division c 100.0 1.9E-32 6.6E-37 302.2 41.1 247 139-389 142-398 (420)
90 3i2n_A WD repeat-containing pr 100.0 2.4E-33 8.1E-38 298.9 32.0 245 142-388 63-355 (357)
91 3jrp_A Fusion protein of prote 100.0 2.5E-33 8.6E-38 300.9 32.2 253 177-429 2-289 (379)
92 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-32 3.6E-37 290.7 34.5 250 180-430 5-340 (351)
93 3odt_A Protein DOA1; ubiquitin 100.0 4.4E-32 1.5E-36 283.6 37.5 242 139-390 54-300 (313)
94 3ei3_B DNA damage-binding prot 100.0 1.1E-32 3.9E-37 298.9 33.8 240 140-386 114-382 (383)
95 2oaj_A Protein SNI1; WD40 repe 100.0 5.7E-33 2E-37 335.8 34.4 234 139-376 12-297 (902)
96 3dwl_C Actin-related protein 2 100.0 3.3E-33 1.1E-37 301.9 23.6 247 181-429 6-283 (377)
97 1p22_A F-BOX/WD-repeat protein 100.0 4.6E-32 1.6E-36 300.4 33.2 255 138-407 167-433 (435)
98 4a11_B DNA excision repair pro 100.0 1.2E-31 4E-36 290.9 35.3 283 141-427 96-405 (408)
99 2xyi_A Probable histone-bindin 100.0 7.8E-32 2.7E-36 298.6 34.4 248 180-427 122-410 (430)
100 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-32 4.5E-37 312.8 28.8 248 139-387 202-518 (524)
101 4ggc_A P55CDC, cell division c 100.0 7.1E-31 2.4E-35 275.4 39.6 245 139-387 62-316 (318)
102 3vu4_A KMHSV2; beta-propeller 100.0 6.1E-32 2.1E-36 292.0 31.9 281 139-432 14-341 (355)
103 2xyi_A Probable histone-bindin 100.0 7.4E-32 2.5E-36 298.8 31.3 253 134-386 118-410 (430)
104 3gre_A Serine/threonine-protei 100.0 1.3E-32 4.5E-37 303.8 24.6 270 152-430 35-362 (437)
105 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-31 4.2E-36 293.4 31.7 246 139-387 76-343 (402)
106 4h5i_A Guanine nucleotide-exch 100.0 9.3E-32 3.2E-36 291.9 30.2 246 138-388 67-345 (365)
107 3jro_A Fusion protein of prote 100.0 2.8E-32 9.4E-37 324.1 26.8 250 138-388 3-287 (753)
108 4e54_B DNA damage-binding prot 100.0 7.9E-32 2.7E-36 298.9 25.9 247 139-388 159-432 (435)
109 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-31 3.8E-36 300.9 25.7 262 140-426 11-296 (588)
110 3lrv_A PRE-mRNA-splicing facto 100.0 1.6E-31 5.4E-36 286.6 25.1 263 151-425 43-331 (343)
111 3dw8_B Serine/threonine-protei 100.0 7.2E-31 2.5E-35 289.6 29.0 243 185-430 27-376 (447)
112 1yfq_A Cell cycle arrest prote 100.0 2.8E-30 9.5E-35 274.1 32.4 236 140-383 52-321 (342)
113 3bws_A Protein LP49; two-domai 100.0 6.6E-30 2.3E-34 281.3 36.5 276 145-426 123-431 (433)
114 4gq1_A NUP37; propeller, trans 100.0 1.4E-30 4.9E-35 285.2 25.7 231 195-426 98-388 (393)
115 3jro_A Fusion protein of prote 100.0 2.3E-30 7.8E-35 307.6 28.3 251 179-429 2-287 (753)
116 1l0q_A Surface layer protein; 100.0 1.7E-28 5.8E-33 266.2 39.8 265 157-429 3-277 (391)
117 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.3E-29 1.1E-33 278.9 34.5 245 140-388 98-393 (450)
118 1l0q_A Surface layer protein; 100.0 4.4E-28 1.5E-32 262.9 42.5 240 145-390 32-279 (391)
119 3mmy_A MRNA export factor; mRN 100.0 3.6E-29 1.2E-33 267.0 31.6 243 138-385 80-345 (368)
120 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-30 3.7E-35 292.8 18.7 227 139-385 47-296 (588)
121 4gq1_A NUP37; propeller, trans 100.0 1.9E-29 6.5E-34 276.3 22.5 243 140-384 85-387 (393)
122 3vu4_A KMHSV2; beta-propeller 100.0 7.2E-28 2.5E-32 260.1 29.4 248 170-430 3-274 (355)
123 2w18_A PALB2, fancn, partner a 100.0 2.3E-27 7.7E-32 251.1 30.4 234 147-384 42-355 (356)
124 3lrv_A PRE-mRNA-splicing facto 100.0 3.7E-28 1.2E-32 260.3 24.5 232 193-431 43-296 (343)
125 3bws_A Protein LP49; two-domai 100.0 2.4E-26 8.4E-31 252.7 35.8 242 139-385 164-431 (433)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.4E-26 1.5E-30 251.7 32.9 246 156-410 143-409 (415)
127 2w18_A PALB2, fancn, partner a 99.9 4.5E-26 1.5E-30 241.2 27.9 197 143-341 110-355 (356)
128 1nir_A Nitrite reductase; hemo 99.9 8.8E-25 3E-29 249.8 38.4 280 147-430 181-517 (543)
129 2ecf_A Dipeptidyl peptidase IV 99.9 1.3E-25 4.3E-30 265.2 31.2 282 144-430 36-416 (741)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.4E-25 4.9E-30 247.6 28.0 274 145-426 63-386 (415)
131 1nir_A Nitrite reductase; hemo 99.9 1.4E-24 4.8E-29 248.1 35.3 277 151-431 144-462 (543)
132 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-24 3.6E-29 256.0 30.6 277 144-428 81-436 (706)
133 3vgz_A Uncharacterized protein 99.9 1.7E-23 5.7E-28 222.8 36.9 264 144-413 40-328 (353)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-24 4.2E-29 256.7 30.8 277 145-426 109-458 (741)
135 3u4y_A Uncharacterized protein 99.9 1.1E-23 3.8E-28 222.8 33.8 275 150-428 3-305 (331)
136 1ri6_A Putative isomerase YBHE 99.9 1.9E-23 6.5E-28 220.9 31.5 268 158-429 6-310 (343)
137 1xfd_A DIP, dipeptidyl aminope 99.9 1E-24 3.5E-29 256.5 23.7 283 146-430 18-396 (723)
138 1xfd_A DIP, dipeptidyl aminope 99.9 5.5E-24 1.9E-28 250.3 28.8 267 146-415 62-426 (723)
139 2ojh_A Uncharacterized protein 99.9 1.1E-23 3.9E-28 216.6 26.0 249 162-415 18-288 (297)
140 2ojh_A Uncharacterized protein 99.9 1.7E-23 5.9E-28 215.3 25.0 231 142-376 39-292 (297)
141 1pby_B Quinohemoprotein amine 99.9 1.8E-22 6.2E-27 212.8 32.4 266 157-431 2-314 (337)
142 1ri6_A Putative isomerase YBHE 99.9 1.5E-22 5.3E-27 213.9 31.7 263 143-410 36-334 (343)
143 3o4h_A Acylamino-acid-releasin 99.9 1.9E-23 6.4E-28 240.1 24.1 270 144-429 21-315 (582)
144 3u4y_A Uncharacterized protein 99.9 1.6E-21 5.5E-26 206.1 33.6 241 143-387 39-305 (331)
145 1k32_A Tricorn protease; prote 99.9 4.4E-22 1.5E-26 244.6 30.6 276 143-429 294-639 (1045)
146 1k32_A Tricorn protease; prote 99.9 3.4E-22 1.1E-26 245.7 28.4 278 138-426 197-501 (1045)
147 3hfq_A Uncharacterized protein 99.9 6.8E-21 2.3E-25 203.3 33.9 270 158-429 4-319 (347)
148 2z3z_A Dipeptidyl aminopeptida 99.9 5.2E-22 1.8E-26 233.1 26.5 272 147-426 28-388 (706)
149 1pby_B Quinohemoprotein amine 99.9 4.1E-21 1.4E-25 202.4 29.6 240 146-393 35-317 (337)
150 3hfq_A Uncharacterized protein 99.9 1.1E-20 3.8E-25 201.7 32.1 243 143-387 38-318 (347)
151 2oit_A Nucleoporin 214KDA; NH2 99.9 1.9E-21 6.4E-26 216.1 25.1 199 144-344 36-279 (434)
152 3scy_A Hypothetical bacterial 99.9 4.5E-20 1.5E-24 198.3 35.0 261 143-407 48-360 (361)
153 3vgz_A Uncharacterized protein 99.9 2.7E-20 9.2E-25 197.9 32.0 228 145-376 89-334 (353)
154 1jmx_B Amine dehydrogenase; ox 99.9 7.1E-21 2.4E-25 201.8 27.3 236 149-392 4-331 (349)
155 1z68_A Fibroblast activation p 99.9 2.6E-22 9E-27 236.2 17.4 279 146-428 61-444 (719)
156 3azo_A Aminopeptidase; POP fam 99.9 2.6E-21 8.8E-26 225.4 25.0 287 139-429 18-369 (662)
157 3scy_A Hypothetical bacterial 99.9 1E-19 3.5E-24 195.5 35.2 271 156-430 13-340 (361)
158 3pe7_A Oligogalacturonate lyas 99.9 7E-21 2.4E-25 205.9 25.2 286 139-429 25-384 (388)
159 1z68_A Fibroblast activation p 99.9 1.5E-21 5.2E-26 229.7 21.1 274 149-428 20-392 (719)
160 2oit_A Nucleoporin 214KDA; NH2 99.9 6.5E-21 2.2E-25 211.7 22.3 212 166-387 23-279 (434)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.1E-19 2.1E-23 190.5 30.2 269 158-428 4-342 (365)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 9.5E-19 3.2E-23 189.0 29.9 244 143-387 38-342 (365)
163 1jmx_B Amine dehydrogenase; ox 99.8 5.6E-19 1.9E-23 187.1 26.9 232 191-430 4-328 (349)
164 3c5m_A Oligogalacturonate lyas 99.8 9E-20 3.1E-24 197.1 20.0 280 146-432 37-387 (396)
165 3o4h_A Acylamino-acid-releasin 99.8 2E-19 6.7E-24 206.6 21.7 230 186-425 21-274 (582)
166 4a5s_A Dipeptidyl peptidase 4 99.8 9.9E-19 3.4E-23 207.0 26.1 277 146-430 18-401 (740)
167 4a5s_A Dipeptidyl peptidase 4 99.8 1.3E-18 4.4E-23 206.1 26.5 276 147-426 64-448 (740)
168 2gop_A Trilobed protease; beta 99.8 8.9E-18 3E-22 178.7 30.0 257 145-426 15-330 (347)
169 3fvz_A Peptidyl-glycine alpha- 99.8 1.5E-17 5.2E-22 177.1 30.3 241 144-386 23-322 (329)
170 1q7f_A NHL, brain tumor CG1071 99.8 5.8E-17 2E-21 168.0 33.6 239 142-387 27-281 (286)
171 2z2n_A Virginiamycin B lyase; 99.8 1.7E-15 5.9E-20 156.7 40.4 282 137-427 7-295 (299)
172 2xdw_A Prolyl endopeptidase; a 99.8 9.1E-17 3.1E-21 189.2 32.5 272 154-429 81-416 (710)
173 1q7f_A NHL, brain tumor CG1071 99.8 4.3E-16 1.5E-20 161.4 32.5 236 185-427 28-280 (286)
174 3azo_A Aminopeptidase; POP fam 99.8 2.8E-17 9.6E-22 191.3 26.1 272 149-425 81-409 (662)
175 3pe7_A Oligogalacturonate lyas 99.8 9.3E-17 3.2E-21 173.4 28.3 256 169-427 13-329 (388)
176 2bkl_A Prolyl endopeptidase; m 99.8 3.5E-17 1.2E-21 192.4 26.4 271 153-429 76-399 (695)
177 2dg1_A DRP35, lactonase; beta 99.8 1.5E-16 5E-21 168.6 28.7 274 145-426 6-313 (333)
178 3fvz_A Peptidyl-glycine alpha- 99.8 7.2E-16 2.5E-20 164.1 33.8 240 186-428 23-323 (329)
179 2oiz_A Aromatic amine dehydrog 99.8 4.1E-16 1.4E-20 168.6 31.7 248 155-411 14-360 (361)
180 3e5z_A Putative gluconolactona 99.7 4.1E-16 1.4E-20 162.7 28.5 237 142-387 25-287 (296)
181 2xdw_A Prolyl endopeptidase; a 99.7 3.6E-16 1.2E-20 184.1 30.9 245 142-388 122-416 (710)
182 2gop_A Trilobed protease; beta 99.7 3.1E-16 1.1E-20 166.7 26.9 223 145-385 59-330 (347)
183 1rwi_B Serine/threonine-protei 99.7 5.2E-16 1.8E-20 158.9 24.7 241 146-388 25-266 (270)
184 2dg1_A DRP35, lactonase; beta 99.7 6.7E-15 2.3E-19 155.7 33.8 235 139-376 39-300 (333)
185 2qc5_A Streptogramin B lactona 99.7 6.1E-14 2.1E-18 145.0 39.5 279 139-425 14-298 (300)
186 3c5m_A Oligogalacturonate lyas 99.7 1.3E-16 4.6E-21 172.0 18.6 229 149-384 85-380 (396)
187 3e5z_A Putative gluconolactona 99.7 4.4E-15 1.5E-19 154.8 29.2 243 176-430 17-287 (296)
188 3no2_A Uncharacterized protein 99.7 7.1E-15 2.4E-19 152.9 28.8 213 155-374 4-231 (276)
189 3dsm_A Uncharacterized protein 99.7 9.4E-15 3.2E-19 155.6 30.1 254 165-426 16-301 (328)
190 3dsm_A Uncharacterized protein 99.7 1.2E-14 4.2E-19 154.6 30.4 239 146-393 45-308 (328)
191 2bkl_A Prolyl endopeptidase; m 99.7 2.6E-16 8.9E-21 184.9 19.0 242 142-388 118-399 (695)
192 1qks_A Cytochrome CD1 nitrite 99.7 9.8E-14 3.4E-18 158.6 39.3 281 145-429 197-540 (567)
193 1rwi_B Serine/threonine-protei 99.7 5.8E-15 2E-19 151.0 26.2 238 188-428 25-265 (270)
194 1yr2_A Prolyl oligopeptidase; 99.7 4.6E-15 1.6E-19 175.5 28.2 270 154-428 116-442 (741)
195 2oiz_A Aromatic amine dehydrog 99.7 1.4E-14 4.9E-19 156.5 28.3 212 149-365 54-358 (361)
196 1qks_A Cytochrome CD1 nitrite 99.7 1.9E-13 6.5E-18 156.2 38.5 272 154-428 165-478 (567)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 5.8E-14 2E-18 146.7 30.6 240 143-387 16-300 (314)
198 3no2_A Uncharacterized protein 99.6 6.1E-14 2.1E-18 145.8 26.3 229 197-432 4-256 (276)
199 1yr2_A Prolyl oligopeptidase; 99.6 4.2E-14 1.4E-18 167.4 27.6 242 143-388 161-443 (741)
200 2z2n_A Virginiamycin B lyase; 99.6 1.2E-12 4.1E-17 135.1 34.6 237 142-387 54-296 (299)
201 2mad_H Methylamine dehydrogena 99.6 1.8E-12 6.1E-17 140.7 36.8 270 152-431 28-354 (373)
202 3sjl_D Methylamine dehydrogena 99.6 6E-13 2.1E-17 143.9 30.2 275 151-433 39-369 (386)
203 3g4e_A Regucalcin; six bladed 99.6 1.8E-12 6.1E-17 135.6 32.0 232 141-376 9-263 (297)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.1E-12 7.3E-17 134.7 30.9 240 184-429 15-301 (314)
205 3hrp_A Uncharacterized protein 99.6 2.1E-12 7.1E-17 142.0 32.0 234 145-384 131-408 (409)
206 2mad_H Methylamine dehydrogena 99.5 1.8E-11 6.1E-16 132.8 35.7 236 149-392 70-356 (373)
207 2qc5_A Streptogramin B lactona 99.5 1.3E-11 4.3E-16 127.5 32.9 236 141-384 58-298 (300)
208 2ghs_A AGR_C_1268P; regucalcin 99.5 1.4E-11 4.9E-16 130.7 32.8 223 146-376 50-293 (326)
209 3c75_H MADH, methylamine dehyd 99.5 2.7E-12 9.2E-17 141.0 27.0 271 154-432 82-407 (426)
210 3iuj_A Prolyl endopeptidase; h 99.5 1.2E-12 4.1E-17 153.7 25.7 241 142-388 126-407 (693)
211 3hrp_A Uncharacterized protein 99.5 1.1E-11 3.6E-16 136.3 31.6 232 187-425 131-408 (409)
212 3sjl_D Methylamine dehydrogena 99.5 2.5E-12 8.6E-17 139.0 25.7 253 150-409 83-384 (386)
213 3iuj_A Prolyl endopeptidase; h 99.5 1.1E-12 3.7E-17 154.0 24.2 238 185-428 127-406 (693)
214 1xip_A Nucleoporin NUP159; bet 99.5 4.5E-13 1.5E-17 145.3 17.6 172 146-330 39-231 (388)
215 3dr2_A Exported gluconolactona 99.5 8.5E-12 2.9E-16 130.9 26.4 231 142-383 42-303 (305)
216 3q7m_A Lipoprotein YFGL, BAMB; 99.5 2.6E-11 8.9E-16 130.7 30.0 263 156-430 53-340 (376)
217 3q7m_A Lipoprotein YFGL, BAMB; 99.5 5.1E-11 1.8E-15 128.4 30.9 260 155-425 102-376 (376)
218 3g4e_A Regucalcin; six bladed 99.4 1.1E-10 3.9E-15 121.8 31.8 224 182-411 8-254 (297)
219 2qe8_A Uncharacterized protein 99.4 4.4E-12 1.5E-16 135.6 20.8 254 145-415 17-307 (343)
220 1xip_A Nucleoporin NUP159; bet 99.4 1.9E-12 6.7E-17 140.3 18.0 173 188-374 39-232 (388)
221 3c75_H MADH, methylamine dehyd 99.4 2.2E-11 7.6E-16 133.7 24.0 239 149-393 122-409 (426)
222 2ghs_A AGR_C_1268P; regucalcin 99.4 4.1E-10 1.4E-14 119.4 32.7 214 188-411 50-284 (326)
223 1kb0_A Quinohemoprotein alcoho 99.4 6.5E-11 2.2E-15 138.4 27.6 255 155-412 127-533 (677)
224 1yiq_A Quinohemoprotein alcoho 99.4 9.2E-11 3.1E-15 137.4 27.8 255 155-413 120-532 (689)
225 3dr2_A Exported gluconolactona 99.4 2.8E-10 9.4E-15 119.3 28.0 234 179-423 37-302 (305)
226 2hz6_A Endoplasmic reticulum t 99.3 3.7E-13 1.3E-17 145.9 4.7 195 155-359 8-207 (369)
227 1yiq_A Quinohemoprotein alcoho 99.3 1.5E-10 5E-15 135.7 25.6 274 156-434 70-512 (689)
228 3hxj_A Pyrrolo-quinoline quino 99.3 5.4E-11 1.9E-15 124.9 18.9 265 145-428 60-325 (330)
229 1kb0_A Quinohemoprotein alcoho 99.3 1.5E-10 5.1E-15 135.4 24.4 272 156-433 77-513 (677)
230 1mda_H Methylamine dehydrogena 99.3 2.2E-10 7.5E-15 123.6 23.5 233 167-408 47-366 (368)
231 1npe_A Nidogen, entactin; glyc 99.3 8.9E-09 3.1E-13 105.4 34.0 251 157-411 2-263 (267)
232 2hz6_A Endoplasmic reticulum t 99.3 1.5E-12 5.2E-17 141.0 4.0 205 197-412 8-217 (369)
233 2qe8_A Uncharacterized protein 99.3 1.8E-10 6E-15 123.1 19.5 227 142-383 64-318 (343)
234 2ece_A 462AA long hypothetical 99.2 7E-09 2.4E-13 113.1 31.6 219 154-374 93-399 (462)
235 3hxj_A Pyrrolo-quinoline quino 99.2 9.7E-11 3.3E-15 123.0 15.9 256 151-425 26-282 (330)
236 1kv9_A Type II quinohemoprotei 99.2 2.5E-09 8.5E-14 124.8 24.6 273 156-434 66-495 (668)
237 2ece_A 462AA long hypothetical 99.1 4.3E-09 1.5E-13 114.7 23.9 220 196-417 93-399 (462)
238 1kv9_A Type II quinohemoprotei 99.1 1.2E-08 4.1E-13 119.0 28.0 254 156-413 117-515 (668)
239 2fp8_A Strictosidine synthase; 99.1 3.4E-08 1.1E-12 104.1 28.6 238 145-387 19-314 (322)
240 4a2l_A BT_4663, two-component 99.1 2.9E-07 9.7E-12 109.5 38.6 274 144-427 214-526 (795)
241 1fwx_A Nitrous oxide reductase 99.1 4.4E-09 1.5E-13 118.4 21.3 253 159-415 18-404 (595)
242 1npe_A Nidogen, entactin; glyc 99.1 1.9E-07 6.5E-12 95.4 32.0 217 146-365 37-261 (267)
243 2iwa_A Glutamine cyclotransfer 99.1 1.8E-08 6.2E-13 103.3 23.7 204 178-387 11-238 (266)
244 4a2l_A BT_4663, two-component 99.1 3.6E-07 1.2E-11 108.6 38.7 272 147-427 175-480 (795)
245 1mda_H Methylamine dehydrogena 99.1 2.4E-09 8.3E-14 115.5 17.8 209 149-363 69-365 (368)
246 2iwa_A Glutamine cyclotransfer 99.1 6.2E-08 2.1E-12 99.3 27.3 194 145-344 21-238 (266)
247 2ad6_A Methanol dehydrogenase 99.0 2.2E-08 7.4E-13 114.6 25.6 252 156-411 115-519 (571)
248 1w6s_A Methanol dehydrogenase 99.0 5.6E-08 1.9E-12 111.5 27.6 194 156-351 62-350 (599)
249 1fwx_A Nitrous oxide reductase 99.0 9E-09 3.1E-13 115.9 20.2 229 155-387 100-432 (595)
250 3nol_A Glutamine cyclotransfer 99.0 7.5E-08 2.6E-12 97.8 24.8 182 145-333 43-245 (262)
251 2xe4_A Oligopeptidase B; hydro 99.0 3.2E-08 1.1E-12 117.1 25.3 191 188-383 175-395 (751)
252 2ad6_A Methanol dehydrogenase 99.0 6.9E-08 2.4E-12 110.4 26.8 271 156-433 62-500 (571)
253 3nol_A Glutamine cyclotransfer 99.0 4.4E-08 1.5E-12 99.5 22.1 187 178-373 33-243 (262)
254 1w6s_A Methanol dehydrogenase 99.0 5.1E-08 1.8E-12 111.8 25.1 250 158-411 123-528 (599)
255 1flg_A Protein (quinoprotein e 98.9 2.7E-07 9.2E-12 105.8 29.1 254 156-411 117-541 (582)
256 2fp8_A Strictosidine synthase; 98.9 2.9E-07 1E-11 96.8 27.2 236 187-428 19-314 (322)
257 1flg_A Protein (quinoprotein e 98.9 9.3E-07 3.2E-11 101.3 32.6 277 156-436 68-525 (582)
258 3nok_A Glutaminyl cyclase; bet 98.9 2E-07 6.8E-12 94.7 23.8 179 187-374 55-254 (268)
259 3v64_C Agrin; beta propeller, 98.9 4.8E-06 1.7E-10 89.0 35.8 243 145-392 34-281 (349)
260 3v9f_A Two-component system se 98.9 2.6E-06 9E-11 100.9 35.9 273 144-426 312-610 (781)
261 3nok_A Glutaminyl cyclase; bet 98.9 3.2E-07 1.1E-11 93.2 22.6 181 145-332 55-254 (268)
262 3v9f_A Two-component system se 98.9 4.1E-06 1.4E-10 99.2 36.2 274 145-427 163-478 (781)
263 2xe4_A Oligopeptidase B; hydro 98.8 1.5E-07 5.1E-12 111.3 23.0 239 146-388 175-460 (751)
264 3mbr_X Glutamine cyclotransfer 98.8 1.4E-06 4.7E-11 87.7 26.3 182 145-332 21-223 (243)
265 1ijq_A LDL receptor, low-densi 98.8 2.5E-05 8.7E-10 82.0 37.1 227 158-390 3-242 (316)
266 3mbr_X Glutamine cyclotransfer 98.8 6.2E-07 2.1E-11 90.2 23.2 189 178-374 11-223 (243)
267 2p4o_A Hypothetical protein; p 98.8 1.9E-06 6.3E-11 90.1 27.8 225 145-376 32-278 (306)
268 3v65_B Low-density lipoprotein 98.8 8.5E-06 2.9E-10 88.3 32.4 242 147-393 79-325 (386)
269 3v64_C Agrin; beta propeller, 98.8 1.2E-05 4.2E-10 85.8 32.3 232 190-425 37-273 (349)
270 3p5b_L Low density lipoprotein 98.7 3.1E-05 1.1E-09 84.3 35.9 233 157-393 84-327 (400)
271 1ijq_A LDL receptor, low-densi 98.7 2.5E-05 8.4E-10 82.1 33.8 224 200-427 3-238 (316)
272 2p4o_A Hypothetical protein; p 98.7 7.2E-06 2.5E-10 85.6 29.3 216 187-410 32-269 (306)
273 3qqz_A Putative uncharacterize 98.7 8.4E-06 2.9E-10 82.9 28.5 204 135-341 17-251 (255)
274 3tc9_A Hypothetical hydrolase; 98.7 3.6E-06 1.2E-10 92.7 27.1 236 146-385 138-429 (430)
275 3v65_B Low-density lipoprotein 98.7 1.4E-05 4.7E-10 86.7 31.0 231 191-425 81-316 (386)
276 2xbg_A YCF48-like protein; pho 98.7 0.0001 3.4E-09 77.8 36.9 267 143-424 34-319 (327)
277 1k3i_A Galactose oxidase precu 98.7 4.9E-07 1.7E-11 105.2 19.9 264 149-415 190-527 (656)
278 3sov_A LRP-6, low-density lipo 98.6 3E-05 1E-09 81.7 30.7 226 165-393 12-245 (318)
279 4hw6_A Hypothetical protein, I 98.6 1.1E-05 3.8E-10 88.9 27.9 236 145-385 139-432 (433)
280 3qqz_A Putative uncharacterize 98.6 1.4E-05 4.7E-10 81.3 25.9 200 181-384 21-251 (255)
281 3p5b_L Low density lipoprotein 98.6 7.5E-05 2.6E-09 81.3 32.6 225 199-426 84-319 (400)
282 3sov_A LRP-6, low-density lipo 98.6 4E-05 1.4E-09 80.7 29.2 222 207-429 12-240 (318)
283 3tc9_A Hypothetical hydrolase; 98.5 2E-05 7E-10 86.6 26.8 235 188-426 138-429 (430)
284 3m0c_C LDL receptor, low-densi 98.5 8.5E-05 2.9E-09 87.7 32.9 232 158-393 397-639 (791)
285 4hw6_A Hypothetical protein, I 98.5 4.1E-05 1.4E-09 84.3 27.5 233 188-426 140-432 (433)
286 3s94_A LRP-6, low-density lipo 98.4 0.00078 2.7E-08 77.5 37.1 284 145-430 84-468 (619)
287 3ei3_A DNA damage-binding prot 98.4 0.00039 1.3E-08 85.5 36.0 281 144-429 553-915 (1158)
288 4a0p_A LRP6, LRP-6, low-densit 98.4 0.005 1.7E-07 70.8 43.3 285 145-433 80-469 (628)
289 3amr_A 3-phytase; beta-propell 98.4 9.3E-05 3.2E-09 78.2 25.7 192 155-351 39-272 (355)
290 3s94_A LRP-6, low-density lipo 98.4 0.00071 2.4E-08 77.8 35.3 202 144-347 39-247 (619)
291 3m0c_C LDL receptor, low-densi 98.4 0.00032 1.1E-08 82.7 33.0 223 200-425 397-630 (791)
292 3kya_A Putative phosphatase; s 98.3 0.00018 6.1E-09 79.9 28.3 240 146-388 140-477 (496)
293 2xbg_A YCF48-like protein; pho 98.3 0.00024 8.3E-09 74.8 27.6 229 144-384 79-320 (327)
294 2xzh_A Clathrin heavy chain 1; 98.3 0.0025 8.7E-08 66.1 33.3 233 150-388 72-334 (365)
295 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0017 5.7E-08 74.8 35.7 227 158-389 8-240 (628)
296 1k3i_A Galactose oxidase precu 98.2 2.2E-05 7.7E-10 91.1 19.0 236 191-427 190-497 (656)
297 3ott_A Two-component system se 98.2 0.0023 7.9E-08 75.3 36.2 264 144-423 21-303 (758)
298 2p9w_A MAL S 1 allergenic prot 98.2 0.00022 7.5E-09 74.7 23.3 203 143-345 11-267 (334)
299 2ism_A Putative oxidoreductase 98.2 0.00056 1.9E-08 72.9 27.1 222 186-415 30-331 (352)
300 2vpj_A Kelch-like protein 12; 98.2 6.2E-05 2.1E-09 77.9 18.8 222 155-387 14-279 (301)
301 3amr_A 3-phytase; beta-propell 98.2 0.00035 1.2E-08 73.7 24.4 184 198-386 40-263 (355)
302 3ott_A Two-component system se 98.2 0.0052 1.8E-07 72.2 37.6 269 144-425 62-350 (758)
303 3a9g_A Putative uncharacterize 98.2 0.00096 3.3E-08 71.2 28.4 227 186-416 28-329 (354)
304 2xzh_A Clathrin heavy chain 1; 98.2 0.0089 3E-07 62.1 33.9 254 166-430 49-335 (365)
305 1bpo_A Protein (clathrin); cla 98.2 0.005 1.7E-07 66.3 32.8 232 150-387 71-332 (494)
306 3kya_A Putative phosphatase; s 98.1 0.00084 2.9E-08 74.5 27.6 240 188-430 140-478 (496)
307 1n7d_A LDL receptor, low-densi 98.1 5.3E-06 1.8E-10 97.1 10.2 221 165-388 385-616 (699)
308 2ism_A Putative oxidoreductase 98.1 0.00073 2.5E-08 72.0 25.7 225 144-374 30-333 (352)
309 2xn4_A Kelch-like protein 2; s 98.1 0.00015 5.3E-09 74.9 19.0 220 157-387 17-277 (302)
310 2p9w_A MAL S 1 allergenic prot 98.1 0.0011 3.9E-08 69.3 25.3 197 186-385 12-264 (334)
311 1bpo_A Protein (clathrin); cla 98.1 0.023 7.9E-07 61.2 35.7 256 165-430 47-334 (494)
312 1n7d_A LDL receptor, low-densi 98.0 1.1E-05 3.8E-10 94.3 10.9 218 144-362 405-633 (699)
313 3a9g_A Putative uncharacterize 98.0 0.0039 1.3E-07 66.4 29.7 227 144-374 28-330 (354)
314 3ii7_A Kelch-like protein 7; p 98.0 0.00032 1.1E-08 72.7 19.4 221 158-387 14-273 (306)
315 3s25_A Hypothetical 7-bladed b 97.9 0.0056 1.9E-07 63.7 26.7 208 153-385 22-254 (302)
316 2g8s_A Glucose/sorbosone dehyd 97.9 0.0084 2.9E-07 63.7 28.7 238 187-426 18-351 (353)
317 3das_A Putative oxidoreductase 97.9 0.019 6.7E-07 60.7 30.9 231 182-415 27-324 (347)
318 1zgk_A Kelch-like ECH-associat 97.8 0.00036 1.2E-08 72.6 16.8 222 155-387 24-288 (308)
319 2g8s_A Glucose/sorbosone dehyd 97.8 0.0032 1.1E-07 67.0 24.3 225 146-373 19-340 (353)
320 4asc_A Kelch repeat and BTB do 97.8 0.0015 5E-08 68.0 20.6 207 159-376 8-253 (315)
321 3sre_A PON1, serum paraoxonase 97.7 0.019 6.5E-07 61.0 27.9 192 146-341 51-296 (355)
322 3das_A Putative oxidoreductase 97.7 0.05 1.7E-06 57.5 30.9 230 142-374 29-326 (347)
323 3ei3_A DNA damage-binding prot 97.6 0.063 2.2E-06 65.9 35.0 274 146-428 653-1000(1158)
324 1cru_A Protein (soluble quinop 97.6 0.042 1.4E-06 60.4 30.5 105 186-290 26-163 (454)
325 2vpj_A Kelch-like protein 12; 97.6 0.0012 4.1E-08 68.0 17.0 185 155-345 62-280 (301)
326 2woz_A Kelch repeat and BTB do 97.6 0.0039 1.3E-07 64.8 21.0 201 167-376 25-263 (318)
327 3ii7_A Kelch-like protein 7; p 97.6 0.0043 1.5E-07 64.0 20.7 181 200-387 14-226 (306)
328 2uvk_A YJHT; unknown function, 97.6 0.0013 4.6E-08 69.5 16.6 230 155-391 19-347 (357)
329 2xn4_A Kelch-like protein 2; s 97.5 0.0043 1.5E-07 63.9 19.7 173 208-388 30-231 (302)
330 1cru_A Protein (soluble quinop 97.5 0.049 1.7E-06 59.9 29.0 105 144-248 26-163 (454)
331 3kci_A Probable E3 ubiquitin-p 97.5 0.085 2.9E-06 56.6 30.4 269 156-431 10-349 (389)
332 3sre_A PON1, serum paraoxonase 97.5 0.04 1.4E-06 58.5 27.1 174 206-383 81-295 (355)
333 2be1_A Serine/threonine-protei 97.4 0.004 1.4E-07 65.7 16.8 189 157-348 11-236 (339)
334 1zgk_A Kelch-like ECH-associat 97.4 0.0047 1.6E-07 64.0 17.2 183 197-387 24-241 (308)
335 3qhy_B Beta-lactamase inhibito 97.3 0.011 3.8E-07 60.7 19.4 251 146-420 25-275 (282)
336 4asc_A Kelch repeat and BTB do 97.3 0.0061 2.1E-07 63.2 17.6 188 152-345 42-279 (315)
337 3s25_A Hypothetical 7-bladed b 97.3 0.03 1E-06 58.1 22.6 213 196-434 23-260 (302)
338 3qhy_B Beta-lactamase inhibito 97.2 0.042 1.5E-06 56.3 22.5 226 187-430 24-249 (282)
339 2woz_A Kelch repeat and BTB do 97.1 0.017 5.9E-07 59.8 18.1 188 152-345 53-289 (318)
340 2wg3_C Hedgehog-interacting pr 97.1 0.42 1.4E-05 52.5 30.0 240 187-429 14-373 (463)
341 3pbp_A Nucleoporin NUP82; beta 97.0 0.042 1.4E-06 59.2 20.3 141 197-339 31-208 (452)
342 1suu_A DNA gyrase subunit A; t 97.0 0.27 9.4E-06 51.0 26.4 187 154-343 6-231 (312)
343 3pbp_A Nucleoporin NUP82; beta 96.9 0.07 2.4E-06 57.5 20.9 145 235-382 27-208 (452)
344 3mvd_K Regulator of chromosome 96.9 0.69 2.4E-05 49.9 36.9 235 187-431 75-378 (423)
345 2uvk_A YJHT; unknown function, 96.8 0.0074 2.5E-07 63.7 12.9 188 155-349 65-348 (357)
346 3uc1_A DNA gyrase subunit A; D 96.8 0.17 5.8E-06 53.0 22.6 197 144-343 41-279 (327)
347 3b7f_A Glycosyl hydrolase, BNR 96.8 0.64 2.2E-05 49.5 28.0 211 157-373 23-296 (394)
348 3b7f_A Glycosyl hydrolase, BNR 96.8 0.24 8.2E-06 52.9 24.4 257 144-407 54-391 (394)
349 3sbq_A Nitrous-oxide reductase 96.8 0.25 8.7E-06 54.8 24.1 225 159-386 73-408 (638)
350 1xi4_A Clathrin heavy chain; a 96.8 0.085 2.9E-06 64.7 22.1 253 165-427 47-331 (1630)
351 2be1_A Serine/threonine-protei 96.8 0.0066 2.3E-07 64.1 11.3 188 198-389 10-234 (339)
352 3l6v_A GYRA, DNA gyrase subuni 96.7 0.82 2.8E-05 48.6 28.7 229 152-384 3-314 (370)
353 1tl2_A L10, protein (tachylect 96.7 0.058 2E-06 52.9 16.7 178 240-428 4-209 (236)
354 4hvt_A Ritya.17583.B, post-pro 96.6 0.22 7.4E-06 57.9 23.7 227 194-426 137-429 (711)
355 1xi4_A Clathrin heavy chain; a 96.6 0.055 1.9E-06 66.3 18.9 203 151-358 72-304 (1630)
356 3no0_A DNA gyrase subunit A; D 96.5 0.65 2.2E-05 47.3 23.8 193 187-385 24-245 (276)
357 3no0_A DNA gyrase subunit A; D 96.4 0.38 1.3E-05 49.0 21.7 195 144-342 23-245 (276)
358 2zwa_A Leucine carboxyl methyl 96.4 0.098 3.3E-06 60.8 19.4 192 154-346 396-638 (695)
359 1suu_A DNA gyrase subunit A; t 96.4 1.1 3.8E-05 46.4 25.8 186 196-385 6-230 (312)
360 4d9s_A UVB-resistance protein 96.4 1.4 4.7E-05 47.3 37.7 273 146-431 17-361 (406)
361 2wg3_C Hedgehog-interacting pr 96.4 0.59 2E-05 51.4 24.4 105 145-249 14-159 (463)
362 3uc1_A DNA gyrase subunit A; D 96.4 1.2 4.2E-05 46.4 28.2 227 156-385 3-278 (327)
363 3kci_A Probable E3 ubiquitin-p 96.3 1.4 4.9E-05 46.9 29.2 224 156-386 62-345 (389)
364 1tl2_A L10, protein (tachylect 96.3 0.18 6.1E-06 49.5 17.4 141 187-336 41-203 (236)
365 1zi0_A DNA gyrase subunit A; b 96.3 1.3 4.3E-05 45.8 30.0 227 155-385 2-276 (307)
366 1wp5_A Topoisomerase IV; broke 96.2 0.88 3E-05 47.4 23.5 228 154-385 3-276 (323)
367 4hvt_A Ritya.17583.B, post-pro 95.9 0.58 2E-05 54.3 22.5 234 147-385 131-429 (711)
368 3sbq_A Nitrous-oxide reductase 95.8 0.81 2.8E-05 50.8 21.5 226 201-427 73-408 (638)
369 4d9s_A UVB-resistance protein 95.6 3.1 0.00011 44.5 32.1 235 186-431 15-309 (406)
370 1a12_A RCC1, regulator of chro 95.4 3.5 0.00012 44.1 36.4 232 186-430 58-368 (413)
371 1zi0_A DNA gyrase subunit A; b 95.4 2.4 8.1E-05 43.7 22.5 196 145-343 42-277 (307)
372 3mvd_K Regulator of chromosome 95.3 3.9 0.00013 43.9 36.4 229 146-386 76-374 (423)
373 3of7_A Regulator of chromosome 95.2 4.5 0.00015 44.2 30.4 191 229-430 148-408 (473)
374 2zwa_A Leucine carboxyl methyl 95.1 0.48 1.7E-05 54.9 18.1 190 196-388 396-637 (695)
375 1wp5_A Topoisomerase IV; broke 95.0 3.9 0.00013 42.4 23.6 197 144-343 38-277 (323)
376 3iot_A Maltose-binding protein 94.9 0.0036 1.2E-07 68.8 -0.6 8 530-537 380-387 (449)
377 3l6v_A GYRA, DNA gyrase subuni 94.7 5.2 0.00018 42.3 23.8 197 143-342 44-315 (370)
378 3q6k_A 43.2 kDa salivary prote 94.2 4.5 0.00015 42.9 21.2 163 251-414 124-339 (381)
379 1sqj_A OXG-RCBH, oligoxylogluc 94.2 8.7 0.0003 45.0 25.9 145 144-291 14-190 (789)
380 1a12_A RCC1, regulator of chro 93.9 8 0.00027 41.2 30.2 227 145-386 59-365 (413)
381 3of7_A Regulator of chromosome 93.6 10 0.00035 41.4 27.0 187 187-386 148-405 (473)
382 2cn3_A Xyloglucanase, beta-1,4 93.2 16 0.00054 42.4 28.9 229 145-376 23-322 (737)
383 4gq2_M Nucleoporin NUP120; bet 92.0 18 0.00063 43.2 24.6 38 272-309 237-274 (950)
384 4gq2_M Nucleoporin NUP120; bet 91.8 15 0.00053 43.9 23.5 71 314-384 237-315 (950)
385 3q6k_A 43.2 kDa salivary prote 89.9 22 0.00075 37.6 26.9 176 144-343 86-306 (381)
386 1zvt_A Topoisomerase IV subuni 87.5 24 0.00081 35.1 17.4 143 157-301 3-163 (256)
387 2zux_A YESW protein; beta-prop 87.4 40 0.0014 37.4 25.0 244 167-426 152-478 (591)
388 1zvt_A Topoisomerase IV subuni 86.4 12 0.0004 37.4 14.4 143 199-343 3-163 (256)
389 2cn3_A Xyloglucanase, beta-1,4 84.5 64 0.0022 37.1 21.9 201 230-432 24-286 (737)
390 2zux_A YESW protein; beta-prop 82.7 64 0.0022 35.8 26.3 268 143-430 177-535 (591)
391 1sqj_A OXG-RCBH, oligoxylogluc 80.7 91 0.0031 36.2 25.7 146 186-333 14-190 (789)
392 4fhn_B Nucleoporin NUP120; pro 77.4 33 0.0011 41.9 16.4 38 314-351 239-276 (1139)
393 4fhn_B Nucleoporin NUP120; pro 69.7 1E+02 0.0035 37.5 18.1 38 272-309 239-276 (1139)
394 1vyd_A Cytochrome C2; electron 67.5 2.5 8.7E-05 36.7 2.4 38 454-491 13-57 (116)
395 1zvu_A Topoisomerase IV subuni 64.2 1.6E+02 0.0055 33.5 16.6 73 228-301 553-633 (716)
396 4a9v_A PHOX; hydrolase, beta-p 60.9 1.3E+02 0.0043 33.6 14.8 61 271-331 476-549 (592)
397 3f7f_A Nucleoporin NUP120; nuc 56.7 36 0.0012 39.0 9.8 37 314-352 223-259 (729)
398 3zwu_A Alkaline phosphatase PH 53.4 1.7E+02 0.0058 32.7 14.6 58 273-330 478-548 (592)
399 3hx6_A Type 4 fimbrial biogene 53.3 2.7E+02 0.0092 30.8 17.3 147 198-345 85-286 (570)
400 2bh4_X Cytochrome C-550; C-typ 51.5 5.2 0.00018 35.7 1.5 38 454-491 15-59 (134)
401 1zvu_A Topoisomerase IV subuni 50.4 84 0.0029 35.8 11.3 144 196-343 470-633 (716)
402 3a0f_A Xyloglucanase; beta-pro 49.4 3.5E+02 0.012 31.0 27.5 149 143-292 19-203 (763)
403 2zuy_A YESX protein; beta-prop 44.4 3.7E+02 0.013 29.9 29.4 161 268-431 365-557 (620)
404 155c_A Cytochrome C550; electr 44.2 8 0.00027 34.5 1.5 38 454-491 16-59 (135)
405 3zwu_A Alkaline phosphatase PH 43.4 59 0.002 36.5 8.8 59 146-204 477-548 (592)
406 4a9v_A PHOX; hydrolase, beta-p 41.5 89 0.0031 34.8 9.6 61 145-205 476-549 (592)
407 3hx6_A Type 4 fimbrial biogene 37.4 4.6E+02 0.016 29.0 19.8 148 240-388 85-286 (570)
408 3m7h_A Putidacin L1; monocot m 36.4 3.3E+02 0.011 26.9 18.2 99 146-257 34-133 (276)
409 1cxc_A Cytochrome C2; electron 36.3 15 0.00051 32.1 2.0 38 454-491 15-61 (124)
410 3f7f_A Nucleoporin NUP120; nuc 35.6 53 0.0018 37.6 6.8 38 145-184 222-259 (729)
411 3m97_X Cytochrome C-552, cytoc 33.2 24 0.00084 31.5 2.9 39 452-492 52-91 (140)
412 3llp_A Fascin; beta-trefoil, a 32.6 5.1E+02 0.017 28.1 15.4 49 369-422 431-480 (493)
413 3mez_B Mannose-specific lectin 30.4 2.4E+02 0.0082 23.6 9.8 26 232-259 59-84 (113)
414 3mez_A Mannose-specific lectin 30.2 2.2E+02 0.0074 23.8 8.4 53 191-256 23-75 (111)
415 2zuy_A YESX protein; beta-prop 29.7 6.2E+02 0.021 28.1 26.1 55 310-364 365-427 (620)
416 3mez_A Mannose-specific lectin 29.6 1.6E+02 0.0054 24.7 7.5 23 191-214 53-75 (111)
417 1ofz_A Fucose-specific lectin; 29.0 4.6E+02 0.016 26.4 15.9 108 186-295 60-190 (312)
418 3a0f_A Xyloglucanase; beta-pro 29.0 6.9E+02 0.024 28.4 24.5 232 146-384 488-760 (763)
419 3c2c_A Cytochrome C2; electron 27.2 41 0.0014 28.2 3.3 39 453-491 13-52 (112)
420 1c2n_A Cytochrome C2; electron 23.8 48 0.0017 29.1 3.1 39 453-491 33-78 (137)
421 4ftd_A Uncharacterized protein 23.2 7E+02 0.024 26.6 17.8 198 147-345 138-379 (453)
422 1xks_A Nuclear pore complex pr 22.7 7.2E+02 0.024 26.5 21.1 158 190-351 41-245 (450)
423 3llp_A Fascin; beta-trefoil, a 22.3 7.6E+02 0.026 26.7 21.0 18 280-297 226-243 (493)
424 3elq_A Arylsulfate sulfotransf 22.3 8.1E+02 0.028 27.0 26.9 39 231-270 357-395 (571)
425 1c3k_A Agglutinin; beta prism, 22.0 4.1E+02 0.014 23.4 11.6 72 313-384 39-122 (147)
426 2dpf_A Curculin; sweet taste, 20.1 3.8E+02 0.013 22.3 9.5 56 274-342 22-77 (115)
427 3mez_B Mannose-specific lectin 20.1 3E+02 0.01 23.0 7.4 26 402-428 59-85 (113)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.8e-44 Score=396.57 Aligned_cols=286 Identities=22% Similarity=0.418 Sum_probs=270.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|.+.|++++|++++++|++|+.||+|+|||+.+++.+..+.+|...|++++|++++++|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.+.+..+.+|...|.+++|++++++|++++.|++|++||++++..+..+.+|...|.+++|++++++|++++.|++|++|
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vw 261 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCC--------------------CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCe
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQN--------------------GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV 357 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspd--------------------g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V 357 (713)
|+++++....+..|...|.+++|+++ +.+|++|+.|++|+|||+++++++..+.+|...|
T Consensus 262 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v 341 (410)
T 1vyh_C 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341 (410)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred ECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcE
Confidence 99999999999999999999999986 6789999999999999999999999999999999
Q ss_pred EEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 358 TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 358 ~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
++++|++ ++.+|++++.||.|+|||+.+... ...+..|...|++++|++++.++++ .|++|+||++
T Consensus 342 ~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 342 RGVLFHS-GGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEECS-SSSCEEEEETTTEEEEECCTTSCC-CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCce-EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999 889999999999999999977654 4455689999999999999966654 9999999986
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-43 Score=376.38 Aligned_cols=288 Identities=22% Similarity=0.362 Sum_probs=265.9
Q ss_pred EEEeeCCCCCceEEEEEccC----CCEEEEEECCCcEEEEeCCCCce--EEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 136 VHTSLNKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spd----g~~Latgs~dg~V~Iwd~~t~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
+.+.+.+|.+.|++|+|+++ +++|++|+.|++|+|||+.+.+. ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34567899999999999975 67999999999999999877654 4468899999999999999999999999999
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
|+|||+++++.+..+..+...+.+++|++++++|++++.|+.|++||+++++....+..+...|.+++|++++++|++++
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 99999999999988888999999999999999999999999999999999999999998999999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 290 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 290 ~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
.|+.|+|||+++++.+..+.+|...|++++|++++++|++++.|++|+|||+++++.+..+.+|...|.+++|++ ++.+
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~ 262 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTH 262 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSE
T ss_pred CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
|++++.|++|+|||+++... +..+..|...|++++|++++.+|++ .|++|+|||.
T Consensus 263 l~s~s~D~~v~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 263 FVSSSSDKSVKVWDVGTRTC-VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEeCCCcEEEEeCCCCEE-EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999987664 4455679999999999999977654 9999999996
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-42 Score=373.06 Aligned_cols=286 Identities=23% Similarity=0.371 Sum_probs=263.2
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
...++.+|.+.|++++|++|+++|++|+.||.|+|||..+++.+..+..|...|.+++|++++++|++++.|+.|++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC----ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 216 NMN----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 216 ~~~----~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
.+. .....+..|...|.++.|++++. |++++.|++|++||+++++.+..+.+|...|.+++|++++++|++++.|
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d 205 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 875 34556778999999999998764 8999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec--CCCCeEEEEEeCCCCCE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEY 369 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~--h~~~V~sl~fsp~~~~~ 369 (713)
++|++||+++++.+..+.+|...|++++|++++++|++++.|++|+|||+++++.+..+.. +...|++++|++ ++.+
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 284 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284 (340)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSE
T ss_pred CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCE
Confidence 9999999999999999999999999999999999999999999999999999988877753 235799999999 8999
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
|++++.||.|++||+.+.. ....+.+|.+.|++++|++++.+|++ .|++|+|||
T Consensus 285 l~~g~~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCeEEEEEcccCc-EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999997765 44556789999999999999976654 899999996
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-42 Score=367.13 Aligned_cols=289 Identities=24% Similarity=0.392 Sum_probs=263.3
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.+++.+|.+.|++++|+|++++|++++.||.|+|||+.+++.+..+..|...|.+++|++++++|++|+.|+.|+|||++
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLV 294 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I 294 (713)
+++.+..+..|...|++++|++++++|++++.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|++|
T Consensus 86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999876 55677889999999999999 67899999999999
Q ss_pred EEEECCCCceEEEEc-cCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 295 KLWDAKSGRELCSFH-GHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~-~h~~~I~si~fsp--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
+|||+++.+....+. .+...+..++|++ ++.+|++++.|++|+|||+++++++.++.+|...|++++|++ ++.+|+
T Consensus 166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~ 244 (304)
T 2ynn_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIII 244 (304)
T ss_dssp EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEE
T ss_pred EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEE
Confidence 999998877665554 4667899999987 778999999999999999999999999999999999999999 788999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc--EEE-EeCCcEEEEecCC
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY--LLC-SNDHTTKFWCRNR 427 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~--~la-S~Dg~v~iWd~~~ 427 (713)
+++.||+|+|||+++.+ ....+..|...+++++|++++. +++ +.|+.+.+|++..
T Consensus 245 s~s~Dg~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 245 SGSEDGTLKIWNSSTYK-VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp EEETTSCEEEEETTTCC-EEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred EEcCCCeEEEEECCCCc-eeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 99999999999998765 4455567889999999999873 354 4889999998854
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-41 Score=368.37 Aligned_cols=287 Identities=25% Similarity=0.405 Sum_probs=262.7
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
....+.+|.+.|+|++|++++++||+|+.||+|+|||..+++....+..|...|.+++|++++++|++++.|+.|++|++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC--CCCEEEE
Q 005123 216 NMN------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--TKSLLVS 287 (713)
Q Consensus 216 ~~~------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp--dg~~L~s 287 (713)
... .....+..|...|.+++|++++..|++++.|++|++||+++++.+..+.+|...|.+++|++ ++++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 653 23455667999999999999999999999999999999999999999999999999999987 5689999
Q ss_pred EeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC--CCCeEEEEEeCC
Q 005123 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPF 365 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~ 365 (713)
|+.|++|++||+++++++..+..|...|++++|++++++|++++.|++|+|||+++.+.+..+..+ ...+++++|++
T Consensus 216 gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~- 294 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL- 294 (354)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-
T ss_pred EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC-
Confidence 999999999999999999999999999999999999999999999999999999998887777644 34789999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
++.+|++++.|+.|+|||+.++.. +..+.+|.+.|++++|++++.+|++ .|++|+||+
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~-~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSR-VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCce-EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 899999999999999999977664 4556689999999999999977754 899999995
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3e-41 Score=356.32 Aligned_cols=290 Identities=26% Similarity=0.452 Sum_probs=265.8
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+..++.+|.+.|++++|++++++|++++.||.|+|||..+++....+..|...|.+++|++++++|++++.|+.|+|||+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
++++.+..+..|...|.+++|++++++|++++.|++|++||+++++.+..+..|...|.+++|++++++|++++.|+.|+
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE--EEEEeCCCCCEEEE
Q 005123 296 LWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT--ALAWHPFHEEYFVS 372 (713)
Q Consensus 296 IwDl~t~~~~~~~~-~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~--sl~fsp~~~~~las 372 (713)
+||+++++.+..+. .+...+.+++|++++++|++++.|+.|+|||+++++.+..+..|...+. ...++..++.+|++
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 99999998887764 4566799999999999999999999999999999999999988876533 33455447889999
Q ss_pred EECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE----eCCcEEEEecC
Q 005123 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS----NDHTTKFWCRN 426 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS----~Dg~v~iWd~~ 426 (713)
++.||.|++||+.+.. .+..+.+|...|.+++|++++.++++ .|++|+||+.+
T Consensus 255 g~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTCC-EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCch-hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999999997765 45666789999999999999988875 49999999875
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3e-41 Score=363.30 Aligned_cols=293 Identities=22% Similarity=0.446 Sum_probs=251.3
Q ss_pred EEeeCCCCC-ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEE--E-EeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 137 HTSLNKNRC-SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM--I-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 137 ~~~l~~H~~-~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~--~-l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
..++.+|.+ .|++++|++++++||+|+.|+.|+|||+.+.+... . ..+|...|++++|++++++|++++.|++|+|
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 456788988 99999999999999999999999999998876432 2 2579999999999999999999999999999
Q ss_pred EEcCCCc--eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC---eeEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 213 WQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC---QEERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 213 wdl~~~~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~---~~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
||++.+. .+..+.+|...|.+++|++++++|++++.|++|++||+++. +.+..+..|...|.+++|++++++|++
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence 9998764 56778899999999999999999999999999999999765 345677889999999999999999999
Q ss_pred EeCCCcEEEEECCCCc--eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---------------CeeEEEe
Q 005123 288 GGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA---------------MKELESF 350 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~--~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t---------------~~~l~~~ 350 (713)
++.|++|++||+++++ ++..+.+|...|++++|++++++|++++.|++|+|||+.. .+++..+
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 9999999999998875 4567889999999999999999999999999999999632 2334455
Q ss_pred ec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc--------eEEEecccCCCeEEEEEcCCC-cEEEE--eCC
Q 005123 351 RG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--------QVEIHNVHDNTVWDLAWHPIG-YLLCS--NDH 418 (713)
Q Consensus 351 ~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~--------~~~~~~~h~~~V~~l~~spdg-~~laS--~Dg 418 (713)
.+ |...|.+++|++ ++.+|++++.|+.|++|+.+.... ......+|...|++|+|+|++ .+|++ .|+
T Consensus 248 ~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp CSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred cCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence 54 888999999999 788999999999999999865431 122345799999999999987 46654 899
Q ss_pred cEEEEecCCCCC
Q 005123 419 TTKFWCRNRPGD 430 (713)
Q Consensus 419 ~v~iWd~~~~~~ 430 (713)
+|+||++.....
T Consensus 327 ~v~~W~~~~~~~ 338 (345)
T 3fm0_A 327 EVAFWKYQRPEG 338 (345)
T ss_dssp CEEEEEECC---
T ss_pred cEEEEEecCCCC
Confidence 999999866554
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.8e-42 Score=375.30 Aligned_cols=292 Identities=22% Similarity=0.385 Sum_probs=262.3
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
....+.+|.+.|++++|++++++|++|+.|++|+|||..+++....+..|...|.+++|++++++|++++.|+.|+|||+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCc-------eeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEE-----ccCCCceEEEEEcC-C
Q 005123 216 NMNN-------VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSL-----TGHGWDVKSVDWHP-T 281 (713)
Q Consensus 216 ~~~~-------~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l-----~~h~~~V~sl~~sp-d 281 (713)
.+.. ....+.+|...|.++.|++++ ..|++++.|++|++||+++++.+..+ .+|...|.+++|++ +
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence 7532 345567899999999999864 57999999999999999999888877 57889999999987 7
Q ss_pred CCEEEEEeCCCcEEEEECC-CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC-----
Q 005123 282 KSLLVSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK----- 355 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~-t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~----- 355 (713)
+++|++|+.|++|+|||++ ..+.+..+.+|...|++++|++++++|++++.|++|+|||+++++.+..+..+..
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 8999999999999999998 4577888999999999999999999999999999999999999999888765432
Q ss_pred --CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe---cccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 356 --DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH---NVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 356 --~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~---~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
.|++++|++ ++++|++|+.||.|+|||+........+. ..|.+.|++++|++++.+|++ .|++|+||++...
T Consensus 298 ~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 298 LPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp SCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred cCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 489999999 89999999999999999997776544432 579999999999999988876 8999999998654
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=365.02 Aligned_cols=283 Identities=21% Similarity=0.300 Sum_probs=239.4
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCC-----------CCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ-----------SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~-----------t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
.|...|.+++|++||++|++++ |+++++||.. ..........++..|.+++|+++ +.|++++.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCEE
Confidence 4667799999999999998887 6678888622 11122233346778999999997 578899999999
Q ss_pred EEEEcCCCceeee----eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCC-CEE
Q 005123 211 KYWQNNMNNVKAN----KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLL 285 (713)
Q Consensus 211 ~vwdl~~~~~~~~----~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg-~~L 285 (713)
+|||+++++.... ..+|...|++++|++++++|++++.|++|++||+++++.+..+.+|...|.+++|++++ .+|
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 9999998865433 34799999999999999999999999999999999999999999999999999999987 478
Q ss_pred EEEeCCCcEEEEECCCCceEEEEc--cCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 286 VSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~~~~~~~--~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
++++.|++|+|||+++++.+..+. .+...+++++|++ ++++|++|+.|++|+|||+++++.+.++.+|...|++++|
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 999999999999999999887764 3556799999998 5678899999999999999999999999999999999999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC-cEEE--EeCCcEEEEecCCC
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLC--SNDHTTKFWCRNRP 428 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~la--S~Dg~v~iWd~~~~ 428 (713)
++++.++|++++.|++|+|||++++. + ....+|.+.|++|+|++++ .+++ +.|++|++|++...
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~~~-~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSLSE-L-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTCCE-E-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred ccCCCeEEEEEeCCCeEEEEECCCCc-E-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 99656789999999999999997764 3 3456899999999999987 4554 48999999998654
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-40 Score=353.55 Aligned_cols=289 Identities=19% Similarity=0.309 Sum_probs=256.9
Q ss_pred EEEEeeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCC-----CceEEEEeccCCCEEEEEEccCCCEEEEEeCCC
Q 005123 135 FVHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS-----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t-----~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG 208 (713)
.+..+|.+|.+.|++++|++++ ++|++|+.|++|++||+.+ +..+..+.+|...|.+++|++++++|++++.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3456899999999999999965 8999999999999999764 234677899999999999999999999999999
Q ss_pred cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC------C
Q 005123 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT------K 282 (713)
Q Consensus 209 ~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd------g 282 (713)
+|+|||+++++.+..+.+|...|.+++|++++.+|++++.|++|++||++. +.+..+.+|...|.+++|++. +
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999964 567788899999999999984 4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
.+|++++.|+.|++||+++.+....+.+|...|++++|++++++|++++.|++|+|||+++++.+..+.. ...|.+++|
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~ 245 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAF 245 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEE
Confidence 4899999999999999999999999999999999999999999999999999999999999999988885 468999999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCCceEEEe-------cccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-------NVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~-------~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
++ ++.+|++++.+ .|++|+++.......+. ..|...|.+++|++|+.+|++ .|+.|+||++..
T Consensus 246 sp-~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 246 SP-NRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CS-SSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cC-CCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 99 78888888765 59999997654333321 235678999999999988765 899999999853
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-40 Score=386.95 Aligned_cols=340 Identities=18% Similarity=0.336 Sum_probs=275.2
Q ss_pred hhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceeee--------E-------EEEeeCCCCCceEEEEE
Q 005123 88 VVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAK--------F-------VHTSLNKNRCSINRVLW 152 (713)
Q Consensus 88 ~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~-------~~~~l~~H~~~V~~v~~ 152 (713)
......+|+|+......... .....+...+..++|+.+........ + ....+.+|...|++++|
T Consensus 77 g~~d~~v~lWd~~~~~~~~~-~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f 155 (611)
T 1nr0_A 77 GDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF 155 (611)
T ss_dssp EETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE
T ss_pred EeCCCCEEEeECCCCcceee-EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEE
Confidence 33456899999854332211 11122334556677776654433211 0 11357899999999999
Q ss_pred ccCCC-EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec------
Q 005123 153 TPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS------ 225 (713)
Q Consensus 153 spdg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~------ 225 (713)
++++. +|++|+.|++|+|||..+++....+.+|...|++++|++|+++|++++.|++|+|||+.+++.+..+.
T Consensus 156 ~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~ 235 (611)
T 1nr0_A 156 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 235 (611)
T ss_dssp CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccc
Confidence 99987 69999999999999999999999999999999999999999999999999999999999988877763
Q ss_pred -cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEE----------------------------------------
Q 005123 226 -AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER---------------------------------------- 264 (713)
Q Consensus 226 -~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~---------------------------------------- 264 (713)
.|...|.+++|++++++|++++.|++|++||+++++.+.
T Consensus 236 ~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~ 315 (611)
T 1nr0_A 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS 315 (611)
T ss_dssp CSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE
T ss_pred cccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC
Confidence 699999999999999999999999999999998776543
Q ss_pred ---EEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-c-------------------------------
Q 005123 265 ---SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-H------------------------------- 309 (713)
Q Consensus 265 ---~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~-~------------------------------- 309 (713)
.+.+|...|.+++|++++++|++++.|++|++||+++++....+ .
T Consensus 316 ~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~ 395 (611)
T 1nr0_A 316 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA 395 (611)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeec
Confidence 33468889999999999999999999999999999876543221 0
Q ss_pred --------------------------------------------------cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005123 310 --------------------------------------------------GHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (713)
Q Consensus 310 --------------------------------------------------~h~~~I~si~fspdg~~Latgs~Dg~I~Iw 339 (713)
.+...+.+++|++||++|++|+.|++|+||
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lw 475 (611)
T 1nr0_A 396 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475 (611)
T ss_dssp SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEE
Confidence 012346789999999999999999999999
Q ss_pred ECCCCee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEE--EecccCCCeEEEEEcCCCcEEEE
Q 005123 340 DIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE--IHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 340 Dl~t~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~--~~~~h~~~V~~l~~spdg~~laS 415 (713)
|+.+++. +.. ..|...|++++|+| ++++|++++.|++|++||+.+...... ....|...|++++|++|+.+|++
T Consensus 476 d~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~las 553 (611)
T 1nr0_A 476 KLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 553 (611)
T ss_dssp EEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred EccCCceeeeec-cCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEE
Confidence 9987653 334 67999999999999 899999999999999999976333322 23349999999999999988865
Q ss_pred --eCCcEEEEecCCCCC
Q 005123 416 --NDHTTKFWCRNRPGD 430 (713)
Q Consensus 416 --~Dg~v~iWd~~~~~~ 430 (713)
.|++|+||+++....
T Consensus 554 gs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 554 GSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp EETTSCEEEEETTCTTS
T ss_pred EECCCcEEEEECCCccc
Confidence 899999999976543
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.5e-41 Score=366.12 Aligned_cols=289 Identities=19% Similarity=0.288 Sum_probs=239.9
Q ss_pred CCCCCceEEEEEccCCCEEEEEEC------CCcEEEEeCCCCce----EEEEeccCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQ------SGEFTLWNGQSFNF----EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~------dg~V~Iwd~~t~~~----~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
..|...|++|+|+|||++||+|+. |+.|++|+..++.. ......|...|++++|+++++ +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 469999999999999999999997 77899999776542 344567899999999999875 5567889999
Q ss_pred EEEEcCCCceee----eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-EE
Q 005123 211 KYWQNNMNNVKA----NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LL 285 (713)
Q Consensus 211 ~vwdl~~~~~~~----~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~-~L 285 (713)
+|||+.+++... ....|...|++++|++++++|++++.|++|++||+++++.+..+.+|...|++++|++++. +|
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 999998876433 2347889999999999999999999999999999999999999999999999999999875 78
Q ss_pred EEEeCCCcEEEEECCCCceEEEE--ccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 286 VSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~~~~~~--~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
++++.|++|+|||+++++.+..+ ..+...+++++|+|+ +.+|++|+.|+.|+|||+++++.+..+..|...|++++|
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~ 277 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence 99999999999999998876654 346778999999996 578899999999999999999999999999999999999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC-CCcEEEE--eCCcEEEEecCCCCCcc
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCS--NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~laS--~Dg~v~iWd~~~~~~~~ 432 (713)
+++++++|++++.|++|+|||++++.. +.. .+|.+.|++|+|+| ++.+|++ .|++|++|++...++..
T Consensus 278 sp~~~~~lasgs~D~~i~iwd~~~~~~-~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 278 SYHSSPFLASISEDCTVAVLDADFSEV-FRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTSCEE-EEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred cCCCCCEEEEEeCCCEEEEEECCCCcE-eEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence 996668999999999999999977653 333 47999999999998 7776654 89999999997665443
No 13
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.1e-40 Score=359.47 Aligned_cols=282 Identities=22% Similarity=0.397 Sum_probs=250.7
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCC------------------CEEEEEEccCCCEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH------------------AIRSMVWSHNDNWMVS 203 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~------------------~V~sl~~spdg~~L~s 203 (713)
+|.+.|+|++|++||++||+|+ ++.++||++.+++.+..+..|.. .|++++|++++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 68999999999998888765532 4999999999999999
Q ss_pred EeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CC
Q 005123 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TK 282 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg 282 (713)
++.|+.|+|||+++++.+..+.+|...|.+++|++++++|++++.|++|++||+++++....+. +...+.+++|++ ++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG 219 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999998887776 567899999999 89
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEE-------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRELCSF-------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----------- 344 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~~~~~-------~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~----------- 344 (713)
++|++++.|+.|+|||+++++.+..+ .+|...|++++|++++++|++++.|+.|+|||+++.
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 99999999999999999999887776 568899999999999999999999999999999753
Q ss_pred -eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC------CCcEEEE--
Q 005123 345 -KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP------IGYLLCS-- 415 (713)
Q Consensus 345 -~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp------dg~~laS-- 415 (713)
.+...+.+|...|.+++|++ ++.+|++++.|+.|++||++++.. +..+.+|...|.+++|++ ++.++++
T Consensus 300 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 300 GTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp -CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeE-EEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 34567788999999999999 789999999999999999987764 455668999999999986 5655654
Q ss_pred eCCcEEEEecCC
Q 005123 416 NDHTTKFWCRNR 427 (713)
Q Consensus 416 ~Dg~v~iWd~~~ 427 (713)
.|++|+||++..
T Consensus 378 ~Dg~i~iW~~~~ 389 (393)
T 1erj_A 378 GDCKARIWKYKK 389 (393)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCcEEECcccc
Confidence 899999999854
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-40 Score=353.60 Aligned_cols=287 Identities=20% Similarity=0.353 Sum_probs=238.8
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEE-ec-cCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMIL-QA-HDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l-~~-h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
...+.+|.+.|++++|+++ +||+|+.|+.|+|||+.+. +....+ .. |...|++++|++++++|++++.|++|+|
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 4567899999999999987 9999999999999999875 445556 34 9999999999999999999999999999
Q ss_pred EEcCC-------CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC----CeeEEEEccCCCceEEEEEcCC
Q 005123 213 WQNNM-------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR----CQEERSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 213 wdl~~-------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~----~~~~~~l~~h~~~V~sl~~spd 281 (713)
||++. .+....+.+|...|.+++|++++++|++++.|++|++||++. .+.+..+.+|...|.+++|+++
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 164 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164 (330)
T ss_dssp EEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred EEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence 99853 345667788999999999999999999999999999999943 2567788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCC--ceEEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC--------eeEEE
Q 005123 282 KSLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQN--GNWVLTASKDQIIKLYDIRAM--------KELES 349 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~--~~~~~~~~h~~~I~si~fspd--g~~Latgs~Dg~I~IwDl~t~--------~~l~~ 349 (713)
+++|++++.|++|+|||++++ +++..+.+|...|.+++|+++ +.+|++++.|++|+|||+++. ..+..
T Consensus 165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 244 (330)
T 2hes_X 165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI 244 (330)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeee
Confidence 999999999999999999876 678889999999999999998 778999999999999999754 34455
Q ss_pred eec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC--ceEEEecccCC-CeEEEEEcC--CCcEEE--EeCCcEE
Q 005123 350 FRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--PQVEIHNVHDN-TVWDLAWHP--IGYLLC--SNDHTTK 421 (713)
Q Consensus 350 ~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~--~~~~~~~~h~~-~V~~l~~sp--dg~~la--S~Dg~v~ 421 (713)
+.. |...|++++|++ + .+|++++.||.|+|||+.++. ........|.. .|++++|++ ++.+|+ +.|++|+
T Consensus 245 ~~~~h~~~v~~v~~s~-~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 245 LPDVHKRQVYNVAWGF-N-GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVN 322 (330)
T ss_dssp CCSCCSSCEEEEEECT-T-SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred cccccccceEEEEEcC-C-CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence 554 889999999996 3 489999999999999987653 22233456776 899999999 565554 4999999
Q ss_pred EEecCC
Q 005123 422 FWCRNR 427 (713)
Q Consensus 422 iWd~~~ 427 (713)
||+++.
T Consensus 323 ~W~~~~ 328 (330)
T 2hes_X 323 FWSLEK 328 (330)
T ss_dssp EEEC--
T ss_pred EEEecc
Confidence 999854
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.1e-39 Score=346.84 Aligned_cols=287 Identities=17% Similarity=0.287 Sum_probs=244.6
Q ss_pred EEEeeCCCCCceEEEEE-----cc-CCCEEEEEECCCcEEEEeCCCC-------ceEEEEeccCCCEEEEEEccCCCEEE
Q 005123 136 VHTSLNKNRCSINRVLW-----TP-TGRRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHNDNWMV 202 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~-----sp-dg~~Latgs~dg~V~Iwd~~t~-------~~~~~l~~h~~~V~sl~~spdg~~L~ 202 (713)
....|.+|.+.|++++| ++ ++++|++|+.|++|+|||+.+. .....+.+|...|.+++|++++.+|+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 34578899999999999 76 8999999999999999998653 35677889999999999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc---cCCCceEEEEEc
Q 005123 203 SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWH 279 (713)
Q Consensus 203 sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~---~h~~~V~sl~~s 279 (713)
+++.|++|+|||+++++.+..+..|...|.+++|++++++|++++.|++|++||+.... ...+. .|...|.+++|+
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~ 171 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYS 171 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEEC
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeeec
Confidence 99999999999999999999999999999999999999999999999999999997443 33332 688899999999
Q ss_pred CCC----------CEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eeEE
Q 005123 280 PTK----------SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELE 348 (713)
Q Consensus 280 pdg----------~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~-~~l~ 348 (713)
+++ .+|++++.|+.|++||. +.+....+..|...|++++|++++++|++++.|+.|+|||+++. ....
T Consensus 172 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp CCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred cccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 986 78999999999999994 56777788899999999999999999999999999999999543 3344
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceE-EEe-----------cccCCCeEEEEEcCCCcEEEE-
Q 005123 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV-EIH-----------NVHDNTVWDLAWHPIGYLLCS- 415 (713)
Q Consensus 349 ~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~-~~~-----------~~h~~~V~~l~~spdg~~laS- 415 (713)
.+. +...|.+++|++ ++.+|++ +.|+.|++||+.+..... ..+ .+|...|++++|++++.+|++
T Consensus 251 ~~~-~~~~v~~v~~sp-~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 251 EFD-AGSTINQIAFNP-KLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp EEE-CSSCEEEEEECS-SSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred eec-CCCcEEEEEECC-CCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 443 556799999999 6777665 457889999997655332 111 157788999999999976654
Q ss_pred -eCCcEEEEecCC
Q 005123 416 -NDHTTKFWCRNR 427 (713)
Q Consensus 416 -~Dg~v~iWd~~~ 427 (713)
.|++|++|+++.
T Consensus 328 ~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 328 FTDGVIRTFSFET 340 (343)
T ss_dssp ETTSEEEEEEEEE
T ss_pred cCCceEEEEEEEc
Confidence 899999999753
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-39 Score=344.93 Aligned_cols=246 Identities=17% Similarity=0.284 Sum_probs=238.6
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|...|.+++|++++.+|++++.|+.|+|||+.+++.+..+..|...+.+++|++++++|++++.||.|++||+++
T Consensus 74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~ 153 (321)
T 3ow8_A 74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153 (321)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT
T ss_pred eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
++....+..+...|.+++|++++++|++++.|+.|++||+++++.+..+.+|...|.+++|++++++|++++.|++|+||
T Consensus 154 ~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iw 233 (321)
T 3ow8_A 154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233 (321)
T ss_dssp CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEE
Confidence 99888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
|+++++.+.++.+|...|.+++|++++++|++++.|++|+|||+++++++.++..|...|++++|++ ++.+|++++.||
T Consensus 234 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~ 312 (321)
T 3ow8_A 234 DVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQ 312 (321)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTC
T ss_pred ECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 789999999999
Q ss_pred cEEEEEc
Q 005123 378 SIFHWLV 384 (713)
Q Consensus 378 ~I~Iwd~ 384 (713)
.|+|||+
T Consensus 313 ~i~vwd~ 319 (321)
T 3ow8_A 313 EIHIYDC 319 (321)
T ss_dssp CEEEEEC
T ss_pred eEEEEeC
Confidence 9999996
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-38 Score=338.00 Aligned_cols=290 Identities=21% Similarity=0.350 Sum_probs=253.7
Q ss_pred EEEeeCCCCCceEEEEEccC-CCEEEEEECCCcEEEEeCCCCc-----eEEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 136 VHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFN-----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t~~-----~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
+..+|++|++.|++|+|+|+ +++||||+.|++|+|||+.+.+ ....+.+|...|.+++|++++++|++++.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 45679999999999999997 6899999999999999987643 45678899999999999999999999999999
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE-EEEccCCCceEEEEEcCCC--CEEE
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-RSLTGHGWDVKSVDWHPTK--SLLV 286 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~-~~l~~h~~~V~sl~~spdg--~~L~ 286 (713)
|++|+............+...+..+.+++++.+|++++.|+.+++||+...... ..+..|...|.+++|++++ .+++
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999999999988888888999999999999999999999999999999776543 3456788999999998754 5788
Q ss_pred EEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCC
Q 005123 287 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH 366 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~ 366 (713)
+++.|+.|++||+++++.+..+.+|...|++++|++++++|++++.|+.|+|||+++.+.+..+.. ...|.+++|++ +
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~-~ 267 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSP-N 267 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECS-S
T ss_pred EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999988874 46799999998 5
Q ss_pred CCEEEEEECCCcEEEEEcCCCCceEEE--------ecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 367 EEYFVSGSLDGSIFHWLVGHETPQVEI--------HNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 367 ~~~lasgs~DG~I~Iwd~~~~~~~~~~--------~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
+. +++++.|+.|+|||++.......+ ...|...|++++|++++.+|++ .|+.|+|||++..
T Consensus 268 ~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 268 RY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp SS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred Cc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 54 556667999999999765433322 3468889999999999977764 8999999998653
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-38 Score=364.17 Aligned_cols=323 Identities=25% Similarity=0.457 Sum_probs=275.1
Q ss_pred ceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCcee------------eeEEEEeeCCCCCceEEEEEccCCC
Q 005123 90 RYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA------------AKFVHTSLNKNRCSINRVLWTPTGR 157 (713)
Q Consensus 90 ~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------~~~~~~~l~~H~~~V~~v~~spdg~ 157 (713)
....+++|+.+.+....+.. +...+..++|..+....+. .......+.+|...|++++|+++++
T Consensus 241 ~d~~i~~w~~~~~~~~~~~~----~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (577)
T 2ymu_A 241 DDKTVKLWNRNGQLLQTLTG----HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ 316 (577)
T ss_dssp TTSCEEEECTTSCEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEeCCCCEEEEEec----CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCC
Confidence 44579999876543333222 2233344455444332221 1112356789999999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEe
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 237 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs 237 (713)
+|++++.|+.|++||.... .+..+..|...|.+++|++++++|++++.|+.|++||. +++.+..+..|...|++++|+
T Consensus 317 ~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s 394 (577)
T 2ymu_A 317 TIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 394 (577)
T ss_dssp EEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEEC
Confidence 9999999999999997654 56678899999999999999999999999999999995 566777788999999999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEE
Q 005123 238 RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 238 ~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
+++++|++++.|+.|++||. +++.+..+.+|...|++++|++++++|++++.|++|++||. +++.+..+..|...|++
T Consensus 395 ~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~ 472 (577)
T 2ymu_A 395 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 472 (577)
T ss_dssp TTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEE
Confidence 99999999999999999995 56778888999999999999999999999999999999996 57788889999999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEeccc
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH 397 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h 397 (713)
++|++++++|++++.|+.|+|||. +++.+..+.+|...|++++|++ ++++|++++.||.|+|||.. ...+..+.+|
T Consensus 473 ~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~~--~~~~~~~~~h 548 (577)
T 2ymu_A 473 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN--GQLLQTLTGH 548 (577)
T ss_dssp EEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTT--SCEEEEEECC
T ss_pred EEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeCC--CCEEEEEcCC
Confidence 999999999999999999999995 5888999999999999999999 78999999999999999963 3456667789
Q ss_pred CCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 398 DNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 398 ~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
.+.|++++|++|+.+|++ .|++|+|||
T Consensus 549 ~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 549 SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999976654 899999997
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.6e-39 Score=371.96 Aligned_cols=287 Identities=20% Similarity=0.350 Sum_probs=254.8
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEEeccCCCEEEEEEccCCCEEEEEeCC----CcEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKY 212 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D----G~I~v 212 (713)
.+.+|.+.|++++|+|||++||+|+.|++|+|||+.++ .....+..|.+.|.+++|++|+++|++++.+ +.|++
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~ 133 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 133 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence 46789999999999999999999999999999998754 3456788999999999999999999988865 36777
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
|| +++....+.+|...|++++|++++. .|++++.|++|++||..+.+.+..+.+|...|.+++|+|++++|++++.|
T Consensus 134 wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 134 FD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp TT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECC
Confidence 76 5666677889999999999999986 59999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEc-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE---------------
Q 005123 292 SLVKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES--------------- 349 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~-------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~--------------- 349 (713)
++|+|||+++++.+..+. +|...|.+++|++++++|++++.|++|+|||+++++.+.+
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 291 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence 999999999999888874 6999999999999999999999999999999998765443
Q ss_pred ----------------------------eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCe
Q 005123 350 ----------------------------FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (713)
Q Consensus 350 ----------------------------~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V 401 (713)
+.+|...|++++|++ ++++|++++.|++|++||+.++.........|...|
T Consensus 292 ~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v 370 (611)
T 1nr0_A 292 WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 370 (611)
T ss_dssp ECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred EcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence 347889999999999 899999999999999999987764443336799999
Q ss_pred EEEEEcCCCcEEE-EeCCcEEEEecCCC
Q 005123 402 WDLAWHPIGYLLC-SNDHTTKFWCRNRP 428 (713)
Q Consensus 402 ~~l~~spdg~~la-S~Dg~v~iWd~~~~ 428 (713)
.+++|++++.+++ +.|+++++|++...
T Consensus 371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~ 398 (611)
T 1nr0_A 371 TGIKTTSKGDLFTVSWDDHLKVVPAGGS 398 (611)
T ss_dssp EEEEECTTSCEEEEETTTEEEEECSSSS
T ss_pred EEEEECCCCcEEEEEcCCceEEeecCCc
Confidence 9999998887664 49999999998654
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-38 Score=338.05 Aligned_cols=291 Identities=15% Similarity=0.232 Sum_probs=263.3
Q ss_pred eEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
......+.+|.+.|++++|++++++|++++.||.|+|||+.+++.+..+..|...|.+++|++++++|++++.||.|++|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCe-----------eEEEEccCCC--ceEE
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQ-----------EERSLTGHGW--DVKS 275 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~-----------~~~~l~~h~~--~V~s 275 (713)
|+.+++.+..+. +...|.+++|++++++|++++.+ +.|++||+.+.. .+..+..+.. .+.+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 999999888876 88899999999999999999999 999999986543 2334445555 8999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC
Q 005123 276 VDWHPTKSLLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 276 l~~spdg~~L~sgs~Dg~I~IwDl~t-~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
++|++++++|++++.|+.|++||+++ .+.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+. +.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~ 259 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TD 259 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CC
Confidence 99999999999999999999999998 78888899999999999999999999999999999999999999988888 78
Q ss_pred CCeEEEEEeCCCCCEEEEEECCC--------------cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCC
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDG--------------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDH 418 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG--------------~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg 418 (713)
..+.+++|++ ++.++++++.++ .|++||+.+... ...+..|...|++++|++++.+|++ .|+
T Consensus 260 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 260 CPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE-IGRVQGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp SCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc-hhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence 8899999999 789999999888 899999977764 4555679999999999999987765 899
Q ss_pred cEEEEecCCC
Q 005123 419 TTKFWCRNRP 428 (713)
Q Consensus 419 ~v~iWd~~~~ 428 (713)
.|+||+++..
T Consensus 338 ~v~iw~~~~~ 347 (369)
T 3zwl_B 338 FIRLHHFEKS 347 (369)
T ss_dssp EEEEEEECHH
T ss_pred eEEEEECccc
Confidence 9999999653
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.9e-39 Score=356.50 Aligned_cols=246 Identities=27% Similarity=0.510 Sum_probs=236.4
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+.+|.+.|++++|++++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|++||++++
T Consensus 145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~ 224 (410)
T 1vyh_C 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224 (410)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC-----------------
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT----------------- 281 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd----------------- 281 (713)
..+..+..|...|.++.|++++.+|++++.|++|++||+.+++....+..|...|.+++|+++
T Consensus 225 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (410)
T 1vyh_C 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 304 (410)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC----
T ss_pred cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ---CCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE
Q 005123 282 ---KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 358 (713)
Q Consensus 282 ---g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~ 358 (713)
+.+|++|+.|++|+|||+++++++..+.+|...|++++|++++++|++++.|++|+|||+++++.+..+.+|...|+
T Consensus 305 ~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~ 384 (410)
T 1vyh_C 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384 (410)
T ss_dssp ---CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
+++|++ ++.+|++|+.||+|+||+++
T Consensus 385 ~l~~~~-~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 385 SLDFHK-TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCC
Confidence 999999 78899999999999999863
No 22
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.9e-39 Score=346.98 Aligned_cols=288 Identities=17% Similarity=0.231 Sum_probs=257.0
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc------eEEEEeccCCCEEEEEEccC----C---CEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN------FEMILQAHDHAIRSMVWSHN----D---NWMV 202 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~------~~~~l~~h~~~V~sl~~spd----g---~~L~ 202 (713)
....+.+|++.|++++|++ ++|++|+.||.|+|||+.+.+ .+..+..|...|++++|+++ + ++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 4567889999999999998 899999999999999999987 78889999999999999999 9 9999
Q ss_pred EEeCCCcEEEEEcCCCce-----eeeeccC-----CCCeeEEEEe----cCCCE-EEEEECCCeEEEEEcCC------Ce
Q 005123 203 SGDDGGAIKYWQNNMNNV-----KANKSAH-----KESVRDLSFC----RTDLK-FCSCSDDTTVKVWDFAR------CQ 261 (713)
Q Consensus 203 sgs~DG~I~vwdl~~~~~-----~~~~~~~-----~~~V~~l~fs----~dg~~-Las~s~Dg~I~iwDl~~------~~ 261 (713)
+++.||.|++||+.+++. ...+..| ...|.+++|+ +++++ |++++.|+.|++||+++ .+
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999998876 7777778 5899999999 99999 99999999999999988 55
Q ss_pred eEE-----EE-------ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc---C---CCCeEEEEEcCC
Q 005123 262 EER-----SL-------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG---H---KNMVLCVKWNQN 323 (713)
Q Consensus 262 ~~~-----~l-------~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~---h---~~~I~si~fspd 323 (713)
.+. .+ ..|...|.+++|++++ +|++++.|+.|++||+++++.+..+.. | ...|.+++|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 555 66 4488899999999999 999999999999999999999999998 8 999999999999
Q ss_pred CCEEEEEECC---CeEEEEECCCCeeEEEeec-------------CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 324 GNWVLTASKD---QIIKLYDIRAMKELESFRG-------------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 324 g~~Latgs~D---g~I~IwDl~t~~~l~~~~~-------------h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
+++|++++.| +.|++||+++++.+..+.. |...|.+++|++ ++++|++++.||.|+|||+++.
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT
T ss_pred CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999 9999999999999999998 999999999999 7899999999999999999877
Q ss_pred CceEEEec-----cc---------------CCCeEEEEEcCCC----------cEEEE--eCCcEEEEecCC
Q 005123 388 TPQVEIHN-----VH---------------DNTVWDLAWHPIG----------YLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 388 ~~~~~~~~-----~h---------------~~~V~~l~~spdg----------~~laS--~Dg~v~iWd~~~ 427 (713)
.....+.. .| ...|++++|++++ .++++ .|+.|+||+++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 65444431 56 8999999999997 45543 899999999864
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.9e-38 Score=330.08 Aligned_cols=281 Identities=17% Similarity=0.298 Sum_probs=252.7
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCce---EEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF---EMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~---~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
...+|.+.|++++|++++++|++++ ||.|+|||+.+.+. ...+. .|...|.+++|++++++|++++.|+.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3447999999999999999999999 99999999987643 33333 789999999999999999999999999999
Q ss_pred EcCCCc--eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 214 QNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 214 dl~~~~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
|+++++ ....+..|...|.+++|++++++|++++.|+.|++||+++++.+..+..|...|.+++|++++++|++++.|
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 999887 566677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
+.|++||+++++.+..+. +...+.+++|++++++|++++.|+.|++||+++.+.. .+..|...|.+++|++ ++++|+
T Consensus 205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~ 281 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFV 281 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEE
T ss_pred CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECC-CCCEEE
Confidence 999999999998887775 7788999999999999999999999999999987754 5677999999999999 789999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
+++.||.|++||+.+.... ....|...|.+++|++++.++++ .|+.|++|++
T Consensus 282 ~~~~dg~i~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 282 STGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSEEEEEETTTCCEE--EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EecCCCcEEEEECCCCeEE--EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999999999999877654 33457889999999999977654 8999999986
No 24
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=325.24 Aligned_cols=285 Identities=18% Similarity=0.305 Sum_probs=256.2
Q ss_pred EEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
.....+.+|.+.|++++| +++++|++++.||.|+|||+.+.+....+..|...|.+++|++++++|++++.||.|++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 445678999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC---ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEeC
Q 005123 215 NNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGK 290 (713)
Q Consensus 215 l~~~---~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~ 290 (713)
+... +....+..|...|.+++| ++++|++++.|+.|++|| ..+.+..+..|...|.+++|++ ++++|++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence 8764 456677889999999999 678999999999999999 6678888889999999999998 8999999999
Q ss_pred CCcEEEEECCCCceEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 291 DSLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
|+.|++|| ..+.+..+.. +...|.+++|++++. |++++.|+.|++||+++++.+..+..|...|++++|++ ++ .
T Consensus 164 d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~ 238 (313)
T 3odt_A 164 DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-D 238 (313)
T ss_dssp TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-C
T ss_pred CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-C
Confidence 99999999 4566777776 889999999999988 99999999999999999999999999999999999999 55 5
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCC
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~ 430 (713)
|++++.||.|++||+++.. ....+..|...|++++|++++.++++ .|+.|+||+++....
T Consensus 239 l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGS-LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp EEEEETTSEEEEECTTTCC-EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGC
T ss_pred EEEEecCCEEEEEECCCCc-eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCce
Confidence 8999999999999998776 44555678889999999999977754 999999999865443
No 25
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.4e-38 Score=338.93 Aligned_cols=286 Identities=16% Similarity=0.212 Sum_probs=251.3
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
..|.+.|++++|++++++|++++.|+.|+|||+.+++ .+..+..|...|++++|++++++|++++.||.|++||++++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 4589999999999999999999999999999999887 88889999999999999999999999999999999999888
Q ss_pred ceeee--eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee---E-EEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 219 NVKAN--KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---E-RSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 219 ~~~~~--~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~---~-~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
+.... +..|...|.+++|++++++|++++.|+.|++||++..+. . .....|...|.+++|++++++|++++.|+
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 65443 366889999999999999999999999999999987652 2 33356789999999999999999999999
Q ss_pred cEEEEECC------------------CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC
Q 005123 293 LVKLWDAK------------------SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 293 ~I~IwDl~------------------t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
.|++||++ +++.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+..|.
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 99999954 678888888899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC--CC-------------------------------ce-------EEEe
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH--ET-------------------------------PQ-------VEIH 394 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~--~~-------------------------------~~-------~~~~ 394 (713)
..|.+++|++ ++.+|+++ .|+.|++|+++. +. .. ..+.
T Consensus 245 ~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 245 LPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp CCEEEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCeEEEEEec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 9999999999 67777777 999999999976 21 00 2223
Q ss_pred cccCCCeEEEEEc-CCC---cEEEE--eCCcEEEEecCCC
Q 005123 395 NVHDNTVWDLAWH-PIG---YLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 395 ~~h~~~V~~l~~s-pdg---~~laS--~Dg~v~iWd~~~~ 428 (713)
.+|...|++++|+ +++ .++++ .|+.|+||+++..
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 4899999999976 665 66654 8999999998543
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.7e-38 Score=367.24 Aligned_cols=289 Identities=20% Similarity=0.329 Sum_probs=250.3
Q ss_pred EEEeeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCCC-----ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 136 VHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSF-----NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t~-----~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
....+++|.+.|+||+|++++ ++|++|+.|++|+|||+.+. .....+.+|...|++++|++++++|++|+.||+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 445788999999999999875 79999999999999998763 346778999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE---ccCCCceEEEEEcCCC--CE
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVDWHPTK--SL 284 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l---~~h~~~V~sl~~spdg--~~ 284 (713)
|+|||+.++.....+..|...|.+++|++++++|++++.|++|+|||+......... .+|...|.+++|++++ .+
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 999999999999999999999999999999999999999999999998765443332 3588889999999976 58
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeC
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
|++++.|++|+|||+++++.+..+.+|...|++++|++++++|++++.|++|+|||+++++.+..+. +...|.+++|++
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 612 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSP 612 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECS
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999988876 456799999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCceEEEecc------------------cCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 365 FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV------------------HDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 365 ~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~------------------h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
++.+|++++ |+.|+|||+++......+... +...|++++|++++.+|++ .|++|+||+
T Consensus 613 -~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 613 -NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp -SSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred -CCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 677777665 567999999876544333211 1124789999999988865 899999999
Q ss_pred cCC
Q 005123 425 RNR 427 (713)
Q Consensus 425 ~~~ 427 (713)
+.+
T Consensus 691 i~~ 693 (694)
T 3dm0_A 691 IGR 693 (694)
T ss_dssp C--
T ss_pred ccC
Confidence 854
No 27
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-38 Score=339.48 Aligned_cols=287 Identities=19% Similarity=0.313 Sum_probs=252.0
Q ss_pred EEeeCCCCCceEEEEEccC----CCEEEEEECCCcEEEEeCCCCceEEEEec-----cCCCEEEEEEccC----CCEEEE
Q 005123 137 HTSLNKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNFEMILQA-----HDHAIRSMVWSHN----DNWMVS 203 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spd----g~~Latgs~dg~V~Iwd~~t~~~~~~l~~-----h~~~V~sl~~spd----g~~L~s 203 (713)
.....+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+++ +++|++
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 3556799999999999984 55677777788999999998887777664 4578999999999 669999
Q ss_pred EeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEE---ccCCCceEEEEEc
Q 005123 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVDWH 279 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l---~~h~~~V~sl~~s 279 (713)
++.||.|+|||+.+++.+..+..|...|.+++|++ ++++|++++.|++|++||+++++.+..+ ..|...|.+++|+
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 99999999999999999999999999999999999 8999999999999999999999998888 6799999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEc----------------------------cCCCCeEEEEEcCCCCEEEEEE
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFH----------------------------GHKNMVLCVKWNQNGNWVLTAS 331 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~----------------------------~h~~~I~si~fspdg~~Latgs 331 (713)
+++++|++++.|+.|++||+++++.+..+. .|...|.+++|+ +++|++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 999999999999999999999876543333 388999999998 77999999
Q ss_pred CCCeEEEEECCCCee--------------EEEeecCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCCCc---eEE
Q 005123 332 KDQIIKLYDIRAMKE--------------LESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETP---QVE 392 (713)
Q Consensus 332 ~Dg~I~IwDl~t~~~--------------l~~~~~h~~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~~~---~~~ 392 (713)
.|+.|++||+++.+. +..+..|...|++++|++ + +.+|++++.||.|++||+.+... ...
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 327 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT 327 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccce
Confidence 999999999987643 788889999999999999 6 89999999999999999987653 333
Q ss_pred Eeccc--CCCeEEEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 393 IHNVH--DNTVWDLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 393 ~~~~h--~~~V~~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
.+..| ...|++++|++++.+|++ .|+.|+|||+.
T Consensus 328 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 328 TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 45556 789999999999977764 89999999985
No 28
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.5e-38 Score=340.23 Aligned_cols=286 Identities=16% Similarity=0.213 Sum_probs=243.0
Q ss_pred EEEeeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSH-NDNWMVSGDDGGAIK 211 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~sp-dg~~L~sgs~DG~I~ 211 (713)
+...+.+|.+.|++++|++++ ++|++|+.||.|+|||+.+.+....+. +|...|.+++|++ ++++|++++.|+.|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 345778999999999999999 999999999999999999988887776 5999999999999 679999999999999
Q ss_pred EEEcCCCceeeeecc---CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-EEEE
Q 005123 212 YWQNNMNNVKANKSA---HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVS 287 (713)
Q Consensus 212 vwdl~~~~~~~~~~~---~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~-~L~s 287 (713)
+||+++.. ...+.. +...|.+++|++++++|++++.|+.|++||+ +++.+..+..|...|.+++|+++++ +|++
T Consensus 145 iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 222 (383)
T 3ei3_B 145 LRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMAT 222 (383)
T ss_dssp EEETTSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred EEECCCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence 99999644 333333 3478999999999999999999999999999 5678888889999999999999998 9999
Q ss_pred EeCCCcEEEEECCC----CceEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecCC--------
Q 005123 288 GGKDSLVKLWDAKS----GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHR-------- 354 (713)
Q Consensus 288 gs~Dg~I~IwDl~t----~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-------- 354 (713)
++.|+.|++||+++ ++.+..+ .|...|++++|++ ++++|++++.|+.|+|||+++++.+..+..|.
T Consensus 223 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (383)
T 3ei3_B 223 SSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 301 (383)
T ss_dssp EETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred EeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence 99999999999998 5566666 5899999999999 99999999999999999999888776666543
Q ss_pred ---------CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc-cCCCeEEEEEcCCCcEEEE-eCCcEEEE
Q 005123 355 ---------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPIGYLLCS-NDHTTKFW 423 (713)
Q Consensus 355 ---------~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~laS-~Dg~v~iW 423 (713)
..+..++|++ ++.+ +++.|+.|+|||+.++.....+... |...+.+++|++++.+|++ .|+.|+||
T Consensus 302 ~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw 378 (383)
T 3ei3_B 302 PIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIW 378 (383)
T ss_dssp CCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEE
T ss_pred ceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEE
Confidence 2344455565 3443 6678999999999887755444422 5677888899999988865 89999999
Q ss_pred ecCC
Q 005123 424 CRNR 427 (713)
Q Consensus 424 d~~~ 427 (713)
+++.
T Consensus 379 ~~~~ 382 (383)
T 3ei3_B 379 NRED 382 (383)
T ss_dssp ECC-
T ss_pred ecCC
Confidence 9864
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=338.56 Aligned_cols=245 Identities=21% Similarity=0.358 Sum_probs=217.2
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE----EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI----LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~----l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.|...|++++|++++ .|++|+.||+|+|||+.+++.+.. +.+|.+.|++|+|++++++|++|+.|++|+|||+++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 366789999999985 688999999999999998775443 458999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEEEcC-CCCEEEEEeCCCc
Q 005123 218 NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHP-TKSLLVSGGKDSL 293 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~~sp-dg~~L~sgs~Dg~ 293 (713)
++.+..+.+|...|++++|++++ .+|++++.|++|++||+++++.+..+. .+...+.+++|++ ++++|++|+.|++
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 99999999999999999999988 478999999999999999988877764 3556799999998 4578899999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
|+|||+++++.+.++.+|...|++++|++++ ++|++|+.|++|+|||+++++.+ .+.+|.+.|++++|+|++..+|++
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp EEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEE
Confidence 9999999999999999999999999999987 57999999999999999988755 578899999999999976778999
Q ss_pred EECCCcEEEEEcCCCC
Q 005123 373 GSLDGSIFHWLVGHET 388 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~ 388 (713)
++.|++|++|++.++.
T Consensus 318 ~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 318 VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EETTSCEEEEECCC--
T ss_pred EcCCCeEEEEECCCCC
Confidence 9999999999997653
No 30
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=335.17 Aligned_cols=292 Identities=17% Similarity=0.311 Sum_probs=247.5
Q ss_pred EEEEeeCCCCCceEEEEEccCCCEEE-EEEC---CCcEEEEeCCCCceEEEE-eccCCCEEEEEEccC---CCEEEEEeC
Q 005123 135 FVHTSLNKNRCSINRVLWTPTGRRLI-TGSQ---SGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN---DNWMVSGDD 206 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg~~La-tgs~---dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spd---g~~L~sgs~ 206 (713)
++...+.+|.+.|++++|+++++.|+ +++. |+.|+|||+.+++..... ..|...|.+++|+++ +++|++++.
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 44556678999999999999997665 5554 899999999988776543 378999999999998 699999999
Q ss_pred CCcEEEEEcCCCc-eeeeeccCCCCeeEEEE------ecCCCEEEEEECCCeEEEEEcCCCe-eEEEEccCCC----ceE
Q 005123 207 GGAIKYWQNNMNN-VKANKSAHKESVRDLSF------CRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGW----DVK 274 (713)
Q Consensus 207 DG~I~vwdl~~~~-~~~~~~~~~~~V~~l~f------s~dg~~Las~s~Dg~I~iwDl~~~~-~~~~l~~h~~----~V~ 274 (713)
||.|++||+.+++ .+..+..|...|.+++| ++++++|++++.|++|++||+++.+ .+..+..+.. .|.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999887 78888899999999965 6789999999999999999999876 6677765544 789
Q ss_pred EEE----EcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCeeE
Q 005123 275 SVD----WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 275 sl~----~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fsp---dg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
+++ |++++++|++++.|+.|++||+++++.+.. ..+...|.+++|++ ++++|++++.|+.|++||+++++.+
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 998 678999999999999999999999887554 55888999999999 9999999999999999999987765
Q ss_pred EEee-----cCCCCeEEEEEeCCCCC-EEEEEECCCcEEEEEcCCCCc------------------eEEEecccCCCeEE
Q 005123 348 ESFR-----GHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHETP------------------QVEIHNVHDNTVWD 403 (713)
Q Consensus 348 ~~~~-----~h~~~V~sl~fsp~~~~-~lasgs~DG~I~Iwd~~~~~~------------------~~~~~~~h~~~V~~ 403 (713)
..+. .|...|++++|++ ++. +|++++.||.|++||++.... .+.....|...|++
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 326 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS 326 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred cceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence 5544 8999999999999 555 899999999999999975432 34556679999999
Q ss_pred EEEcCCCcEEE---EeCCcEEEEecCCC
Q 005123 404 LAWHPIGYLLC---SNDHTTKFWCRNRP 428 (713)
Q Consensus 404 l~~spdg~~la---S~Dg~v~iWd~~~~ 428 (713)
++|++++.+++ +.|+.|+||++...
T Consensus 327 ~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 99999995553 38999999999654
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.2e-37 Score=348.86 Aligned_cols=325 Identities=26% Similarity=0.453 Sum_probs=275.3
Q ss_pred ceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceee------------eEEEEeeCCCCCceEEEEEccCCC
Q 005123 90 RYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA------------KFVHTSLNKNRCSINRVLWTPTGR 157 (713)
Q Consensus 90 ~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------~~~~~~l~~H~~~V~~v~~spdg~ 157 (713)
....+++|+...+....+.. +...+..++|+.+....+.. ......+.+|...|++++|+++++
T Consensus 200 ~d~~v~~w~~~~~~~~~~~~----~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~ 275 (577)
T 2ymu_A 200 DDKTVKLWNRNGQLLQTLTG----HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQ 275 (577)
T ss_dssp TTSEEEEECTTSCEEEEEEC----CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEeCCCcEEEEEec----CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC
Confidence 45689999876543332221 22233344454443322210 112356789999999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEe
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 237 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs 237 (713)
+|++++.|+.|++||.. ++....+.+|...|.+++|++++++|++++.|+.|++||+.... ...+..|...|.+++|+
T Consensus 276 ~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s 353 (577)
T 2ymu_A 276 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAFS 353 (577)
T ss_dssp EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEECCCSSCEEEEEEC
T ss_pred EEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEEeCCCCCEEEEEEC
Confidence 99999999999999964 56778899999999999999999999999999999999987654 45567899999999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEE
Q 005123 238 RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 238 ~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
+++++|++++.|++|++||. +++.+..+..|...|++++|++++++|++++.|+.|+|||. +++.+..+.+|...|++
T Consensus 354 ~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~ 431 (577)
T 2ymu_A 354 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 431 (577)
T ss_dssp TTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEE
T ss_pred CCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEE
Confidence 99999999999999999995 56778888899999999999999999999999999999995 57788889999999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEeccc
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH 397 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h 397 (713)
++|++|+++|++++.|+.|++||+ +++.+..+..|...|++++|++ ++++|++++.|+.|+|||.. ......+.+|
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~--~~~~~~~~~h 507 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN--GQLLQTLTGH 507 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEETT--SCEEEEEECC
T ss_pred EEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCC--CCEEEEEeCC
Confidence 999999999999999999999996 5778889999999999999999 89999999999999999963 3455667789
Q ss_pred CCCeEEEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 398 DNTVWDLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 398 ~~~V~~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
...|++|+|++++.+|++ .|+.|+|||++
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 999999999999977764 89999999963
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-37 Score=338.32 Aligned_cols=282 Identities=18% Similarity=0.339 Sum_probs=255.8
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.+|.+.|++++|++++++|++++.||.|+||| .+++.+..+..|...|.+++|++++++|++++.|+.|++||+.+++.
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 45788999999999999999999999999999 67788889999999999999999999999999999999999999998
Q ss_pred eeeeccCCCC---------------eeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 221 KANKSAHKES---------------VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 221 ~~~~~~~~~~---------------V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
+..+..+... +.+++|++++ .+++++.|+.|++||+++++.+..+..|...|.+++|++++++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 8888777766 9999999874 58899999999999999998888999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCC
Q 005123 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~ 365 (713)
++++.|+.|++||+++++.+..+..|...|.+++|++++ +|++++.|+.|++||+++++.+..+..|...|.+++|++
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~- 340 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ- 340 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-
T ss_pred EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCC-------------------ceEEEecccCC--CeEEEEEcCCCcEEE--EeCCcEEE
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHET-------------------PQVEIHNVHDN--TVWDLAWHPIGYLLC--SNDHTTKF 422 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~~-------------------~~~~~~~~h~~--~V~~l~~spdg~~la--S~Dg~v~i 422 (713)
++++|++++.||.|++||+++.. ..+..+..|.. .|++++|++++.+|+ +.|+.|+|
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 78999999999999999997654 14555666765 999999999997764 39999999
Q ss_pred EecC
Q 005123 423 WCRN 426 (713)
Q Consensus 423 Wd~~ 426 (713)
|+++
T Consensus 421 w~~~ 424 (425)
T 1r5m_A 421 VAIP 424 (425)
T ss_dssp EECC
T ss_pred Eeec
Confidence 9985
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-39 Score=349.48 Aligned_cols=287 Identities=16% Similarity=0.327 Sum_probs=253.8
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC----CceEEEEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t----~~~~~~l~~h~~~V~sl~~spd-g~~L~sgs~DG~I~vwdl~ 216 (713)
.|...|++++|++++++|++++.||.|+|||+.+ .+.+..+..|...|++++|+++ +++|++++.|+.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4788999999999999999999999999999987 4578888999999999999998 8999999999999999999
Q ss_pred CCc------eeee---eccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEEccC------CCceEEEEEcC
Q 005123 217 MNN------VKAN---KSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGH------GWDVKSVDWHP 280 (713)
Q Consensus 217 ~~~------~~~~---~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h------~~~V~sl~~sp 280 (713)
+++ .... ...|...|.+++|+++ +.+|++++.|+.|++||+++++.+..+..+ ...|.+++|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 3222 3578899999999999 789999999999999999999998888876 78899999999
Q ss_pred CC-CEEEEEeCCC---cEEEEECCCC-ceEEEEc-cCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecC
Q 005123 281 TK-SLLVSGGKDS---LVKLWDAKSG-RELCSFH-GHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (713)
Q Consensus 281 dg-~~L~sgs~Dg---~I~IwDl~t~-~~~~~~~-~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h 353 (713)
++ .+|++++.|+ .|++||++++ +.+..+. +|...|++++|++ ++++|++++.|+.|+|||+++++.+..+..|
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 87 6899999998 9999999986 5667777 8999999999999 9999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE----------------------------------ecccCC
Q 005123 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI----------------------------------HNVHDN 399 (713)
Q Consensus 354 ~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~----------------------------------~~~h~~ 399 (713)
...|++++|++++..+|++++.|+.|+|||+.+....... ...|..
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGE 384 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCC
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccC
Confidence 9999999999944489999999999999999765432211 011567
Q ss_pred CeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 400 TVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 400 ~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
.|.+++|+++|.+|++ .|+.|+||+++..
T Consensus 385 ~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 385 PSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 7889999999999976 7999999998653
No 34
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.4e-37 Score=329.18 Aligned_cols=243 Identities=17% Similarity=0.317 Sum_probs=226.5
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC----ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~----~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
.+..|...|.+++|++++++|++|+.|+.|+|||+.+. +....+.+|...|.+++|++++ .|++++.|+.|++||
T Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd 170 (340)
T 1got_B 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWD 170 (340)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEE
Confidence 34568899999999999999999999999999998875 3566788999999999999776 588999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
+++++.+..+..|...|.+++|++++++|++++.|++|++||+++++.+..+.+|...|++++|++++++|++++.|++|
T Consensus 171 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v 250 (340)
T 1got_B 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250 (340)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 295 KLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
+|||+++++.+..+.. +...|++++|++++++|++|+.|+.|+|||+.+++.+..+.+|...|++++|++ ++.+|++
T Consensus 251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s 329 (340)
T 1got_B 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVAT 329 (340)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEE
T ss_pred EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEE
Confidence 9999999888777653 334799999999999999999999999999999999999999999999999999 7899999
Q ss_pred EECCCcEEEEE
Q 005123 373 GSLDGSIFHWL 383 (713)
Q Consensus 373 gs~DG~I~Iwd 383 (713)
++.|+.|+|||
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 99999999996
No 35
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-39 Score=346.83 Aligned_cols=281 Identities=15% Similarity=0.198 Sum_probs=232.6
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
.+.+.|++++|++++++||+++.|+.|+|||+.++ +.+..+..|...|++++|++++++|++++.|+.|+|||+.+++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 46789999999999999999999999999999988 6778888999999999999999999999999999999999877
Q ss_pred ---eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe---eEEEEcc-CCCceEEEEEcCCCCEEEEEeCCC
Q 005123 220 ---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---EERSLTG-HGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 220 ---~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~---~~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
....+..|...|.+++|++++++|++++.|++|++||+++.+ ....+.. |...|.+++|++++++|++++.|+
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 168 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence 566677899999999999999999999999999999998876 3677777 999999999999999999999999
Q ss_pred cEEEEECCC------------------CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee----EEEe
Q 005123 293 LVKLWDAKS------------------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE----LESF 350 (713)
Q Consensus 293 ~I~IwDl~t------------------~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~----l~~~ 350 (713)
.|++||+++ ++.+..+ .|...|++++|++++++|++++.|+.|+|||+++++. +..+
T Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence 999999852 4455556 7899999999999999999999999999999999887 7888
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC--------------------------------------ceE-
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--------------------------------------PQV- 391 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~--------------------------------------~~~- 391 (713)
..|...|++++|++ ++.+|++++.|+.+ +|+..... ...
T Consensus 248 ~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (377)
T 3dwl_C 248 KLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFR 325 (377)
T ss_dssp ECSSSCEEEEEEEE-TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------------
T ss_pred cCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccccccc
Confidence 99999999999999 78888888766555 66654211 000
Q ss_pred ------------EEecccCCCeEEEEEcCCC------cEEEEeCCcEEEEec
Q 005123 392 ------------EIHNVHDNTVWDLAWHPIG------YLLCSNDHTTKFWCR 425 (713)
Q Consensus 392 ------------~~~~~h~~~V~~l~~spdg------~~laS~Dg~v~iWd~ 425 (713)
.+...|.+.|++|++.+.. .+.++.||.|+|||+
T Consensus 326 ~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 326 NMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred chhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0112389999999976544 333459999999985
No 36
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.1e-36 Score=319.42 Aligned_cols=252 Identities=20% Similarity=0.364 Sum_probs=228.1
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwD 256 (713)
+..+++.+|.+.|++++|+|++++|++++.||.|+|||++++..+..+..|...|.+++|++++++|++++.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcC-CCCEEEEEECCC
Q 005123 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQ 334 (713)
Q Consensus 257 l~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg 334 (713)
+++++.+..+.+|...|.+++|++++++|++++.|++|+|||++++ .....+.+|...|.+++|++ ++.+|++|+.|+
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999987 45567889999999999999 678999999999
Q ss_pred eEEEEECCCCeeEEEee-cCCCCeEEEEEeCC-CCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcE
Q 005123 335 IIKLYDIRAMKELESFR-GHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 335 ~I~IwDl~t~~~l~~~~-~h~~~V~sl~fsp~-~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (713)
+|+|||+++.+....+. .|...|..++|++. ++.+|++++.|++|+|||+++.. .+..+.+|...|.+++|++++.+
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSE
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-cceeeCCCCCCEEEEEECCCCCE
Confidence 99999998877665554 46678999999873 46799999999999999998765 45566689999999999999977
Q ss_pred EEE--eCCcEEEEecCCCC
Q 005123 413 LCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 413 laS--~Dg~v~iWd~~~~~ 429 (713)
|++ .|++|+|||++...
T Consensus 243 l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp EEEEETTSCEEEEETTTCC
T ss_pred EEEEcCCCeEEEEECCCCc
Confidence 754 89999999986544
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.3e-37 Score=335.71 Aligned_cols=281 Identities=14% Similarity=0.185 Sum_probs=244.5
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
..+.+..|++++++|++++.||.|+|||+.+++....+..|...|++++|++++++|++++.|+.|++||+++++.+..+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 44555678999999999999999999999999888888899999999999999999999999999999999999998889
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc---CCCceEE---------------------EEEcC
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG---HGWDVKS---------------------VDWHP 280 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~---h~~~V~s---------------------l~~sp 280 (713)
..|...|.+++|++++++|++++.|++|++||+++++.+..+.. +...|.+ ++|++
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 99999999999999999999999999999999999998888874 3334444 55578
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCee-EEEeec-CCCC
Q 005123 281 TKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAMKE-LESFRG-HRKD 356 (713)
Q Consensus 281 dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fspdg~-~Latgs~Dg~I~IwDl~t~~~-l~~~~~-h~~~ 356 (713)
++++|++++.|+.|++||+++++.+..+. .|...|++++|+++++ +|++++.|+.|++||+++++. +..+.. |...
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 337 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP 337 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC
Confidence 89999999999999999999998877775 4788999999999998 999999999999999998754 667766 6677
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC--------ceEEEecccCCCeEEEEEcCCCc----EEEE-eCCcEEEE
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--------PQVEIHNVHDNTVWDLAWHPIGY----LLCS-NDHTTKFW 423 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~--------~~~~~~~~h~~~V~~l~~spdg~----~laS-~Dg~v~iW 423 (713)
|+++.|. ++.+|++++.|+.|++||+.... ........|.+.|.+++|++++. ++++ .++.+++|
T Consensus 338 v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~ 415 (420)
T 3vl1_A 338 INNVYFA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALY 415 (420)
T ss_dssp EEEEEEE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEE
T ss_pred ceEEEeC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEE
Confidence 8888665 46899999999999999997632 12234556888999999999987 6655 89999999
Q ss_pred ecCC
Q 005123 424 CRNR 427 (713)
Q Consensus 424 d~~~ 427 (713)
+++.
T Consensus 416 ~~~~ 419 (420)
T 3vl1_A 416 NLSN 419 (420)
T ss_dssp ESCC
T ss_pred eccC
Confidence 9864
No 38
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.3e-37 Score=345.47 Aligned_cols=288 Identities=18% Similarity=0.231 Sum_probs=238.1
Q ss_pred eeCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCceEE--EEeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 005123 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEM--ILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 139 ~l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~--~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwd 214 (713)
....|...|+||+|+| ++++||+|+.||.|+|||+.+.+... .+.+|.+.|++|+|+| ++++|++++.||+|+|||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 3457889999999998 56799999999999999998776544 4467999999999997 689999999999999999
Q ss_pred cCCCceeeeecc--CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-EEEEEeCC
Q 005123 215 NNMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKD 291 (713)
Q Consensus 215 l~~~~~~~~~~~--~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~D 291 (713)
++++........ +...+.+++|++++++|++++.||+|++||++. +.+..+.+|...|++|+|++++. +|++++.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 987755444333 345678999999999999999999999999865 56677888999999999999875 78899999
Q ss_pred CcEEEEECCCCceEEE---EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC------CeEEEEE
Q 005123 292 SLVKLWDAKSGRELCS---FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK------DVTALAW 362 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~---~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~------~V~sl~f 362 (713)
+.|+|||+++.+.... ..+|...|++++|++++++|++++.|+.|+|||+++++....+..|.. .+..+.|
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 9999999998765433 356889999999999999999999999999999999988777766543 2345567
Q ss_pred eCCCCCEEEEEE------------CCCcEEEEEcCCCCceEEEecccCCCeEEE-EEcCCCcEEEE-eCCcEEEEecCCC
Q 005123 363 HPFHEEYFVSGS------------LDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGYLLCS-NDHTTKFWCRNRP 428 (713)
Q Consensus 363 sp~~~~~lasgs------------~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~~laS-~Dg~v~iWd~~~~ 428 (713)
++ ++.++++++ .++.|+|||+.++.....+...|...|.++ +|++++.+|++ .|++|+||+++..
T Consensus 353 ~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~g 431 (435)
T 4e54_B 353 HP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEA 431 (435)
T ss_dssp CS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC--
T ss_pred cC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcC
Confidence 77 455555543 345799999988887777777888889887 69999988876 8999999998654
No 39
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.6e-37 Score=337.60 Aligned_cols=283 Identities=17% Similarity=0.254 Sum_probs=243.3
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
.+++++|++++++|++++.|+.|++||+.+.+....+..| ..+....|++++++|++++.||.|+|||+++++....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3558999999999999999999999999887665555555 445566789999999999999999999999999888888
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 005123 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~ 305 (713)
.|...|++++|++++++|++++.|++|++||+++++.+..+.+|...|.+++|++++++|++++.|+.|++||+++++.+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEEcc---CCCCeEE---------------------EEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEEE
Q 005123 306 CSFHG---HKNMVLC---------------------VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTAL 360 (713)
Q Consensus 306 ~~~~~---h~~~I~s---------------------i~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl 360 (713)
..+.. +...|.+ ++|++++++|++++.|+.|+|||+++++.+..+. .|...|+++
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence 88874 3334444 4557899999999999999999999988877664 478899999
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCceEE-EecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
+|++++..+|++++.||.|++||+++....+. +...|...|+++.|. ++.++++ .|+.|+||++.....
T Consensus 297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEECCTTC
T ss_pred EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEecCCccEEEEeccCCCC
Confidence 99994444999999999999999988765444 444477888888766 5545544 899999999977543
No 40
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=329.44 Aligned_cols=284 Identities=15% Similarity=0.283 Sum_probs=250.9
Q ss_pred CCCCCceEEEEEccCCC-EEEEEECCCcEEEEeC----CCCc------eEEEEec----------cCCCEEEEEEccCCC
Q 005123 141 NKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNG----QSFN------FEMILQA----------HDHAIRSMVWSHNDN 199 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~----~t~~------~~~~l~~----------h~~~V~sl~~spdg~ 199 (713)
..|.+.|++++|+++++ +||+++.||.|+|||+ .+++ ....+.. |...|++++|+++++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34678999999999999 9999999999999999 8877 4555554 678999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc-------
Q 005123 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD------- 272 (713)
Q Consensus 200 ~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~------- 272 (713)
+|++++.||.|+||| .+++.+..+..|...|.+++|++++++|++++.|+.|++||+.+++.+..+..+...
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 999999999999999 667777888899999999999999999999999999999999999999888877766
Q ss_pred --------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 273 --------VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 273 --------V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
+.+++|++++ .+++++.|+.|++||+++++.+..+..|...|.+++|++++++|++++.|+.|++||++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp -----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 9999999874 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEE
Q 005123 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKF 422 (713)
Q Consensus 345 ~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~i 422 (713)
+.+..+..|...|.+++|++ ++ +|++++.|+.|++||+++.. .......|...|.+++|++++.++++ .|+.|+|
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNT-LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp SCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTE-EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCc-EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence 99999999999999999999 55 99999999999999997765 44555578899999999999977754 8999999
Q ss_pred EecCCCC
Q 005123 423 WCRNRPG 429 (713)
Q Consensus 423 Wd~~~~~ 429 (713)
|+++...
T Consensus 357 ~~~~~~~ 363 (425)
T 1r5m_A 357 YDLKKLN 363 (425)
T ss_dssp EECHHHH
T ss_pred EECCCCc
Confidence 9996544
No 41
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-35 Score=340.98 Aligned_cols=334 Identities=16% Similarity=0.258 Sum_probs=264.8
Q ss_pred ceeEEEEEeccCC------CceeeccCccccccCccceeeeCCCCCceeee---------------EEEEeeCCCCCceE
Q 005123 90 RYMQIRMWQRDSR------DRTVLQATPAAAIDMLPTVAYTDNPSTSFAAK---------------FVHTSLNKNRCSIN 148 (713)
Q Consensus 90 ~~~~ir~W~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------~~~~~l~~H~~~V~ 148 (713)
....+++|+.... .... ..........+..++|+.+....+... .....+.+|...|+
T Consensus 86 ~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 86 ESGKVIVWGWTFDKESNSVEVNV-KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN 164 (615)
T ss_dssp TTSEEEEEEEEEEGGGTEEEEEE-EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred CCCEEEEEeCCCCcccccccccc-cchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEE
Confidence 4568999998533 1111 111112233455566665544333211 13456789999999
Q ss_pred EEEEccCCC-EEEEEECCCcEEEEeCCCCceEEEEeccCC---CEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 149 RVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDH---AIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 149 ~v~~spdg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~---~V~sl~~spd-g~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
+++|+++++ +|++++.|+.|++||+.+++.+..+..|.. .|++++|+++ +++|++++.||.|++||+.+++.+..
T Consensus 165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence 999999998 899999999999999999999999999999 9999999999 99999999999999999999998888
Q ss_pred e-c---cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-------------------------------
Q 005123 224 K-S---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG------------------------------- 268 (713)
Q Consensus 224 ~-~---~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~------------------------------- 268 (713)
+ . .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..
T Consensus 245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 323 (615)
T ss_dssp CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEE
Confidence 8 6 899999999999 999999999999999999987655443332
Q ss_pred --------------CCCceEE---------------------------------EEEcCC--------------------
Q 005123 269 --------------HGWDVKS---------------------------------VDWHPT-------------------- 281 (713)
Q Consensus 269 --------------h~~~V~s---------------------------------l~~spd-------------------- 281 (713)
|...|.+ ++| ++
T Consensus 324 ~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 324 YELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp EETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEE
T ss_pred EECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEccc
Confidence 2222222 222 11
Q ss_pred -----------------------------------------------------CCEEEEEeC-CCcEEEEECCCCceE-E
Q 005123 282 -----------------------------------------------------KSLLVSGGK-DSLVKLWDAKSGREL-C 306 (713)
Q Consensus 282 -----------------------------------------------------g~~L~sgs~-Dg~I~IwDl~t~~~~-~ 306 (713)
+++|++++. |+.|++||+.+++.. .
T Consensus 403 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~ 482 (615)
T 1pgu_A 403 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD 482 (615)
T ss_dssp EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred CcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccccc
Confidence 334444454 555666665554433 4
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec-CCCCeEEEEEeCC---------CCCEEEEEECC
Q 005123 307 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPF---------HEEYFVSGSLD 376 (713)
Q Consensus 307 ~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-h~~~V~sl~fsp~---------~~~~lasgs~D 376 (713)
.+..|...|++++|++++++|++++.|+.|+|||+++++.+..+.+ |...|++++|++. ++++|++++.|
T Consensus 483 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d 562 (615)
T 1pgu_A 483 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 562 (615)
T ss_dssp CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred ccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC
Confidence 4566888999999999999999999999999999999999999988 9999999999983 57899999999
Q ss_pred CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
|.|++||+.+....+..+.+|...|++++|++++. |++ .|++|+||+++.
T Consensus 563 g~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 563 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred CcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999887667778889999999999999998 543 899999999864
No 42
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.6e-36 Score=317.48 Aligned_cols=245 Identities=20% Similarity=0.378 Sum_probs=224.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|...|++++|++++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|+|||++.
T Consensus 59 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~ 138 (319)
T 3frx_A 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138 (319)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred eEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CceeeeeccCCCCeeEEEEecC------CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 218 NNVKANKSAHKESVRDLSFCRT------DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~d------g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
..+..+..|...|.++.|+++ +..|++++.|++|++||+++.+....+.+|...|.+++|++++++|++++.|
T Consensus 139 -~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d 217 (319)
T 3frx_A 139 -QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD 217 (319)
T ss_dssp -CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETT
T ss_pred -CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 556677889999999999884 4589999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec--------CCCCeEEEEEe
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--------HRKDVTALAWH 363 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~--------h~~~V~sl~fs 363 (713)
++|+|||+++++.+..+.. ...|.+++|++++.+|++++.+ .|++|+++....+..+.. |...+.+++|+
T Consensus 218 g~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 295 (319)
T 3frx_A 218 GEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295 (319)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEEC
Confidence 9999999999999888874 5679999999999999988755 599999998877766642 45679999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCC
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+ ++++|++++.||.|+|||+.+
T Consensus 296 p-dg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 296 A-DGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp T-TSSEEEEEETTSCEEEEEEEE
T ss_pred C-CCCEEEEeecCceEEEEEEee
Confidence 9 899999999999999999865
No 43
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=323.78 Aligned_cols=251 Identities=21% Similarity=0.405 Sum_probs=217.6
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+|...|++++|++++++||+|+.|+.|+|||..+. +.+..+.+|...|.+++|++++++|++++.|++|+|||+++
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 4689999999999999999999999999999998776 45678899999999999999999999999999999999987
Q ss_pred Cc---eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe--eEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 218 NN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 218 ~~---~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
+. .+..+..|...|.+++|++++++|++++.|++|++||+++.+ ....+.+|...|.+++|++++++|++++.|+
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence 63 455677899999999999999999999999999999998775 4567889999999999999999999999999
Q ss_pred cEEEEECCCC---------------ceEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------eE
Q 005123 293 LVKLWDAKSG---------------RELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------EL 347 (713)
Q Consensus 293 ~I~IwDl~t~---------------~~~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~---------~l 347 (713)
+|+|||.... +++..+.+ |...|.+++|++++.+|++++.|+.|+|||++... ..
T Consensus 217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~ 296 (345)
T 3fm0_A 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA 296 (345)
T ss_dssp CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE
T ss_pred eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe
Confidence 9999996321 23444544 78899999999999999999999999999987542 12
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
....+|...|++++|+|++..+||+++.||+|+||++.+.+..
T Consensus 297 ~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 2345799999999999955579999999999999999876644
No 44
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.1e-37 Score=331.15 Aligned_cols=251 Identities=20% Similarity=0.338 Sum_probs=213.7
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE----EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE----MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~----~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
..+|...|++++|+++++ +++++.||+|+|||+.+++.. ....+|...|++|+|++++++|++++.|+.|+|||+
T Consensus 90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 346889999999999985 567888999999999887543 344579999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCeeEEEE--ccCCCceEEEEEcCC-CCEEEEEeCC
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSL--TGHGWDVKSVDWHPT-KSLLVSGGKD 291 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~~~~~l--~~h~~~V~sl~~spd-g~~L~sgs~D 291 (713)
++++.+..+..|...|++++|++++. +|++++.|++|++||+++++.+..+ ..+...|.+++|+|+ +.+|++|+.|
T Consensus 169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d 248 (357)
T 4g56_B 169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248 (357)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence 99999999999999999999999874 7899999999999999988766554 346678999999997 5689999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
+.|+|||+++++.+..+..|...|++++|++++ ++|++++.|++|+|||+++++.+..+ +|...|++|+|+|.++.+|
T Consensus 249 ~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 249 GNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp SCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEE
T ss_pred cceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEE
Confidence 999999999999999999999999999999986 67899999999999999999877665 6999999999998778999
Q ss_pred EEEECCCcEEEEEcCCCCceEE
Q 005123 371 VSGSLDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~ 392 (713)
++++.||+|++|++.+..+...
T Consensus 328 ~s~s~Dg~v~iW~~~~~~~~~~ 349 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSEGRTEN 349 (357)
T ss_dssp EEEETTSCEEEEECC-------
T ss_pred EEEcCCCeEEEEECCCCCcccc
Confidence 9999999999999976554433
No 45
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-37 Score=336.94 Aligned_cols=288 Identities=14% Similarity=0.200 Sum_probs=240.5
Q ss_pred eEEEEeeCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCC---Cc---eEEEEeccCCCEEEEEEccCCCEEEEEeC
Q 005123 134 KFVHTSLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQS---FN---FEMILQAHDHAIRSMVWSHNDNWMVSGDD 206 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t---~~---~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 206 (713)
+.+.....+|.+.|++++|++ ++++||+|+.||.|+|||+.+ +. ....+ .|...|++++|++++++|++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 344444489999999999999 999999999999999999766 32 23333 48999999999999999999999
Q ss_pred CCcEEEEEcC---CCceeeeec----------c--CCCCeeEEE--EecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-
Q 005123 207 GGAIKYWQNN---MNNVKANKS----------A--HKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG- 268 (713)
Q Consensus 207 DG~I~vwdl~---~~~~~~~~~----------~--~~~~V~~l~--fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~- 268 (713)
||.|+|||++ +++...... . +...+.++. +++++.+|++++.|++|++||+++++.+..+..
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 211 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS 211 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence 9999999995 444333222 1 455677777 557899999999999999999999999999988
Q ss_pred -CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcC----CCCEEEEEECCCeEEEEECC
Q 005123 269 -HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ----NGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 269 -h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fsp----dg~~Latgs~Dg~I~IwDl~ 342 (713)
|...|++++|++++++|++++.|+.|+|||+++++.+..+. .|...|++++|++ ++.+|++++.|+.|+|||++
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 88999999999999999999999999999999999998886 6788999996654 67899999999999999999
Q ss_pred CCeeEEEeecC--------------------------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec-
Q 005123 343 AMKELESFRGH--------------------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN- 395 (713)
Q Consensus 343 t~~~l~~~~~h--------------------------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~- 395 (713)
+++.+..+..| ...|++++|+ ++.+|++++.|+.|++||+.+......+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 99988877644 4458888998 358999999999999999987765444332
Q ss_pred -----------------------------------ccCCCeEEEEEcCC--CcEEEE--eCCcEEEEe
Q 005123 396 -----------------------------------VHDNTVWDLAWHPI--GYLLCS--NDHTTKFWC 424 (713)
Q Consensus 396 -----------------------------------~h~~~V~~l~~spd--g~~laS--~Dg~v~iWd 424 (713)
.|.+.|++++|+++ +.+|++ .||.|+||+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 28899999999988 655544 999999995
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.2e-35 Score=327.34 Aligned_cols=285 Identities=20% Similarity=0.351 Sum_probs=254.7
Q ss_pred EEeeCCCCCce-EEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 137 HTSLNKNRCSI-NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 137 ~~~l~~H~~~V-~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
...+.+|.+.| .|+.+ ++++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|++++ +|++++.||+|++||+
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 44678998885 66666 57899999999999999999999999999999999999999887 9999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEe--cCCCEEEEEECCCeEEEEEcCCCee-----------------------EEEEccCC
Q 005123 216 NMNNVKANKSAHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFARCQE-----------------------ERSLTGHG 270 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs--~dg~~Las~s~Dg~I~iwDl~~~~~-----------------------~~~l~~h~ 270 (713)
++++.+..+..|...|.+++|+ +++.+|++++.|++|++||+++... +..+.+|.
T Consensus 191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 9999999999999999999998 5778999999999999999987642 45667788
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEe
Q 005123 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~ 350 (713)
..|.++. +++++|++++.|+.|++||+++++.+..+.+|...|.+++|++++++|++++.|+.|++||+++++.+..+
T Consensus 271 ~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 271 ASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp SCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 8888885 45889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~ 429 (713)
.+|...|.+++|+ +.+|++++.||.|++||+++....... .+...+..++|++++.++++ .|+.|+|||++...
T Consensus 349 ~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 349 QGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGK 423 (464)
T ss_dssp CCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEE--ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCC
T ss_pred eCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeee--cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCc
Confidence 9999999999996 579999999999999999876644443 35677888999999988765 89999999997654
Q ss_pred Cc
Q 005123 430 DT 431 (713)
Q Consensus 430 ~~ 431 (713)
..
T Consensus 424 ~~ 425 (464)
T 3v7d_B 424 LV 425 (464)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 47
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9.2e-36 Score=321.88 Aligned_cols=244 Identities=19% Similarity=0.327 Sum_probs=226.0
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC------ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
.+..|...|.+++|++++++|++++.|+.|++|++... .....+..|...|.+++|+++++.|++++.|++|+|
T Consensus 101 ~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~l 180 (354)
T 2pbi_B 101 AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180 (354)
T ss_dssp EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 34568889999999999999999999999999997643 345677889999999999999999999999999999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
||+++++.+..+..|...|.+++|++ ++++|++++.|++|++||+++++.+..+..|...|++++|++++++|++++.
T Consensus 181 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 260 (354)
T 2pbi_B 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD 260 (354)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC
Confidence 99999999999999999999999987 5689999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEccC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCC
Q 005123 291 DSLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h--~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~ 368 (713)
|++|+|||+++++.+..+..+ ...+++++|++++++|++++.|+.|+|||+.+++.+..+.+|...|++++|++ ++.
T Consensus 261 D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~ 339 (354)
T 2pbi_B 261 DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGT 339 (354)
T ss_dssp TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSS
T ss_pred CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCC
Confidence 999999999998887776543 34789999999999999999999999999999999999999999999999999 789
Q ss_pred EEEEEECCCcEEEEE
Q 005123 369 YFVSGSLDGSIFHWL 383 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd 383 (713)
+|++++.|++|+||+
T Consensus 340 ~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 AFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEEcCCCCEEecC
Confidence 999999999999996
No 48
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.4e-36 Score=314.08 Aligned_cols=248 Identities=19% Similarity=0.334 Sum_probs=217.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC--CceEEEEeccCCCEEEEEEccC--CCEEEEEeCCCcEEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t--~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~DG~I~vwd 214 (713)
.+.+|.+.|++++|+++|++||+|+.|++|+|||+.+ .+.+..+.+|.+.|.+++|+++ +++|++++.|++|+|||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 5679999999999999999999999999999999874 4677899999999999999863 89999999999999999
Q ss_pred cCCCc--eeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCe--eEEEEccCCCceEEEEEcCC-------
Q 005123 215 NNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPT------- 281 (713)
Q Consensus 215 l~~~~--~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~--~~~~l~~h~~~V~sl~~spd------- 281 (713)
+++++ .+..+..|...|.+++|+++ +.+|++++.|++|++||+++.. ....+.+|...|.+++|+++
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence 98874 45566789999999999997 8899999999999999998753 24567789999999999996
Q ss_pred ------CCEEEEEeCCCcEEEEECCCCc----eEEEEccCCCCeEEEEEcCCC---CEEEEEECCCeEEEEECCCCe---
Q 005123 282 ------KSLLVSGGKDSLVKLWDAKSGR----ELCSFHGHKNMVLCVKWNQNG---NWVLTASKDQIIKLYDIRAMK--- 345 (713)
Q Consensus 282 ------g~~L~sgs~Dg~I~IwDl~t~~----~~~~~~~h~~~I~si~fspdg---~~Latgs~Dg~I~IwDl~t~~--- 345 (713)
+++|++|+.|++|+|||+++++ .+..+.+|...|.+++|++++ ++|++++.|++|+|||+++..
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~ 243 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW 243 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc
Confidence 5799999999999999998866 566788999999999999984 899999999999999998643
Q ss_pred eEEEe--ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 346 ELESF--RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 346 ~l~~~--~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
....+ ..|...|.+++|++ ++++|++++.|+.|+||+....
T Consensus 244 ~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 244 KKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp EEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTT
T ss_pred ceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEECCC
Confidence 12233 46788999999999 7899999999999999998644
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-37 Score=337.45 Aligned_cols=286 Identities=21% Similarity=0.394 Sum_probs=250.6
Q ss_pred CCceEEEEEccCCC-EEEEE----------ECCCcEEEEeCCCCce---EEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 144 RCSINRVLWTPTGR-RLITG----------SQSGEFTLWNGQSFNF---EMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 144 ~~~V~~v~~spdg~-~Latg----------s~dg~V~Iwd~~t~~~---~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
...|.+++|+++++ +|+++ +.|+.|+|||+.+.+. +.. ..|...|++++|++++++|++++.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCCe
Confidence 34689999999987 89999 8899999999988752 322 358899999999999999999999999
Q ss_pred EEEEEcCC----CceeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCe------eEEE---EccCCCceEE
Q 005123 210 IKYWQNNM----NNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQ------EERS---LTGHGWDVKS 275 (713)
Q Consensus 210 I~vwdl~~----~~~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~------~~~~---l~~h~~~V~s 275 (713)
|+|||+.+ .+....+..|...|++++|+++ +++|++++.|++|++||+++.+ .... +..|...|.+
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999987 4577788899999999999998 8999999999999999998876 3322 3568899999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEccC------CCCeEEEEEcCCC-CEEEEEECCC---eEEEEECCCC
Q 005123 276 VDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGH------KNMVLCVKWNQNG-NWVLTASKDQ---IIKLYDIRAM 344 (713)
Q Consensus 276 l~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h------~~~I~si~fspdg-~~Latgs~Dg---~I~IwDl~t~ 344 (713)
++|+++ +.+|++++.|+.|++||+++++.+..+..+ ...|.+++|++++ .+|++++.|+ .|++||++++
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 999998 789999999999999999999999888876 7889999999987 6899999998 9999999986
Q ss_pred -eeEEEee-cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC-cEEEE--eCCc
Q 005123 345 -KELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCS--NDHT 419 (713)
Q Consensus 345 -~~l~~~~-~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~laS--~Dg~ 419 (713)
+.+..+. .|...|++++|++.++.+|++++.||.|++||+++... +..+..|...|++++|++++ .++++ .|+.
T Consensus 251 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-EEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-ceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 6677787 89999999999986789999999999999999987654 45556789999999999998 67765 8999
Q ss_pred EEEEecCCCCCc
Q 005123 420 TKFWCRNRPGDT 431 (713)
Q Consensus 420 v~iWd~~~~~~~ 431 (713)
|+||+++.....
T Consensus 330 i~iw~~~~~~~~ 341 (416)
T 2pm9_A 330 IEVQTLQNLTNT 341 (416)
T ss_dssp EEEEESCCCCCS
T ss_pred EEEEEccCCCCC
Confidence 999999776543
No 50
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.8e-36 Score=326.34 Aligned_cols=286 Identities=21% Similarity=0.360 Sum_probs=247.5
Q ss_pred eCCCCCc--eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 140 LNKNRCS--INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 140 l~~H~~~--V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..+|.+. +.+++|+. +.+++++.|+.|+|||+.+++....+.. |...|++++|++++++|++++.||.|+|||+.
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 4466655 45566664 5688899999999999999998887776 78999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC-CCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~-~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
+++.+..+..|...|.+++| ++++|++++.|+.|++||++ ....+..+..|...|.+++|++++++|++++.|+.|+
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 99999999999999999999 56799999999999999998 5667788889999999999999999999999999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCC-CEEEEEE--CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg-~~Latgs--~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
+||+++++.+..+..|...|.+++|++++ .+|++++ .|+.|++||+++++.+..+. +...|++++|++ ++.+|++
T Consensus 243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~ 320 (401)
T 4aez_A 243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSP-HSKEIMS 320 (401)
T ss_dssp EEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEE
T ss_pred EccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECC-CCCeEEE
Confidence 99999999999999999999999999976 4555554 69999999999999998886 667899999999 7888888
Q ss_pred EE--CCCcEEEEEcCCCCceEE-EecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCc
Q 005123 373 GS--LDGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 373 gs--~DG~I~Iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~ 431 (713)
++ .||.|+|||+.+...... .+..|...|.+++|++++.++++ .|+.|+||++......
T Consensus 321 ~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 54 899999999977543322 35678999999999999987765 8999999999765543
No 51
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.4e-35 Score=353.36 Aligned_cols=291 Identities=23% Similarity=0.374 Sum_probs=267.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.+.+.+|.+.|++++|+|++++||+++.||.|+|||+.+++.+..+..|...|++++|++++++|++++.||.|+|||+.
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLV 294 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I 294 (713)
+++.+..+..|...|++++|++++.+|++++.|++|++||+.++ .....+..|...|.+++|++ ++++|++++.|+.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999886 67788888999999999999 88899999999999
Q ss_pred EEEECCCCceEEEEccCC-CCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 295 KLWDAKSGRELCSFHGHK-NMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~-~~I~si~fsp--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
++||+++++....+..+. ..+.+++|++ ++.+|++++.|+.|++||+++++.+..+..|...|++++|++ ++.+|+
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 244 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIII 244 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEE
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEE
Confidence 999999888777776554 8899999999 999999999999999999999999999999999999999999 788999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc--EE-EEeCCcEEEEecCCCC
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY--LL-CSNDHTTKFWCRNRPG 429 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~--~l-aS~Dg~v~iWd~~~~~ 429 (713)
+++.||.|++||+.+.. .......|...|++++|++++. ++ ++.|+.+.+|++....
T Consensus 245 ~~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTYK-VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EEETTSCEEEEETTTCS-EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EEeCCCeEEEEECCCCc-EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 99999999999997765 4455567888999999999985 34 4589999999986543
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7e-35 Score=323.62 Aligned_cols=278 Identities=20% Similarity=0.358 Sum_probs=254.8
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|.+.|++++|+ +++|++|+.||.|++||+.+++.+..+..|...|.+++|+ ++.|++++.||.|++||+++
T Consensus 153 ~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~ 228 (445)
T 2ovr_B 153 RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET 228 (445)
T ss_dssp EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS
T ss_pred EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC
Confidence 4567899999999997 6799999999999999999999999999999999999995 67899999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
++.+..+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...|.+++| ++++|++++.|+.|++|
T Consensus 229 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~ 304 (445)
T 2ovr_B 229 GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304 (445)
T ss_dssp CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEE
Confidence 9999999999999999999 7889999999999999999999999999999999999999 68999999999999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec---CCCCeEEEEEeCCCCCEEEEEE
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~---h~~~V~sl~fsp~~~~~lasgs 374 (713)
|+++++.+..+..|...+.++.+ ++++|++++.|+.|++||+++++.+..+.. |...|++++|+ +++|++++
T Consensus 305 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~ 379 (445)
T 2ovr_B 305 DVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSS 379 (445)
T ss_dssp ETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEE
T ss_pred ECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEe
Confidence 99999999999999999999888 567999999999999999999999999886 78899999994 57999999
Q ss_pred CCCcEEEEEcCCCCceEEEe----cccCCCeEEEEEcCCCcEEEE--eCCc----EEEEecCCC
Q 005123 375 LDGSIFHWLVGHETPQVEIH----NVHDNTVWDLAWHPIGYLLCS--NDHT----TKFWCRNRP 428 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~----~~h~~~V~~l~~spdg~~laS--~Dg~----v~iWd~~~~ 428 (713)
.||.|++||+.++.....+. ..|.+.|++++|++++.++++ .||+ |.|||++..
T Consensus 380 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 380 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999999998877555542 467889999999999988765 7887 999999764
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.7e-36 Score=315.20 Aligned_cols=284 Identities=15% Similarity=0.243 Sum_probs=250.6
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
|.+.|.+++|++||++|+++..++.+.+|+............|...|++++|++++++|++++ ||.|++||+.+++...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456799999999999999998888888887666555556668999999999999999999999 9999999998765332
Q ss_pred ee---c--cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe--eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 223 NK---S--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 223 ~~---~--~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
.+ . .|...|.+++|++++++|++++.|+.|++||+++.+ ....+..|...|.+++|++++++|++++.|+.|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 166 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 22 2 688999999999999999999999999999998876 5667778999999999999999999999999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
+||+++++.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+. +...|.+++|++ ++++|++++.
T Consensus 167 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~ 244 (337)
T 1gxr_A 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP-TGEWLAVGME 244 (337)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT-TSSEEEEEET
T ss_pred EEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECC-CCCEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999888775 778899999999 7899999999
Q ss_pred CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCc
Q 005123 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 376 DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~ 431 (713)
|+.|++||+++... .....|...|.+++|++++.++++ .|+.|++|+++.....
T Consensus 245 ~~~i~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 245 SSNVEVLHVNKPDK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp TSCEEEEETTSSCE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCcEEEEECCCCCe--EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 99999999977653 345678999999999999977754 8999999999765443
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-35 Score=322.74 Aligned_cols=243 Identities=27% Similarity=0.407 Sum_probs=221.3
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
+...|++++|++|+++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|++||+++++...
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred eeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEE-------ccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 223 NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSL-------TGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l-------~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
.+. +...|.+++|++ ++++|++++.|++|++||+++++.+..+ .+|...|.+++|++++++|++++.|++|
T Consensus 202 ~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v 280 (393)
T 1erj_A 202 TLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280 (393)
T ss_dssp EEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 664 567899999999 8999999999999999999998877766 5688999999999999999999999999
Q ss_pred EEEECCCC------------ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 295 KLWDAKSG------------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 295 ~IwDl~t~------------~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
+|||+++. .+...+.+|...|.+++|++++++|++++.|+.|+|||+++++.+..+.+|...|.+++|
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~ 360 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 360 (393)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence 99999763 345667789999999999999999999999999999999999999999999999999999
Q ss_pred eCC-----CCCEEEEEECCCcEEEEEcCC
Q 005123 363 HPF-----HEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 363 sp~-----~~~~lasgs~DG~I~Iwd~~~ 386 (713)
++. ++.+|++|+.||+|+||+++.
T Consensus 361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 862 468999999999999999854
No 55
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.5e-35 Score=309.71 Aligned_cols=246 Identities=23% Similarity=0.469 Sum_probs=226.6
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+.+|...|++++|++++++|++++.|+.|+|||+.+++.+..+..|...|.+++|++++++|++++.|+.|++||++++
T Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 139 (312)
T 4ery_A 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
+.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+. .+...+.+++|++++++|++++.|+.|++|
T Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 219 (312)
T 4ery_A 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219 (312)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 9999999999999999999999999999999999999999988877664 456789999999999999999999999999
Q ss_pred ECCCCceEEEEccCCCCeEE--EEEc-CCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 298 DAKSGRELCSFHGHKNMVLC--VKWN-QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~s--i~fs-pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
|+++++.+..+.+|...+.+ ..++ +++++|++++.|+.|++||+++++.+..+.+|...|.+++|++ ++.+|++++
T Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~ 298 (312)
T 4ery_A 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAA 298 (312)
T ss_dssp ETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEE
T ss_pred ECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEE
Confidence 99999999999887665433 2343 5789999999999999999999999999999999999999999 788999887
Q ss_pred --CCCcEEEEEcC
Q 005123 375 --LDGSIFHWLVG 385 (713)
Q Consensus 375 --~DG~I~Iwd~~ 385 (713)
.|+.|++|+.+
T Consensus 299 ~~~d~~i~~W~~d 311 (312)
T 4ery_A 299 LENDKTIKLWKSD 311 (312)
T ss_dssp CTTTCCEEEEECC
T ss_pred ccCCccEEEecCC
Confidence 69999999864
No 56
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.9e-36 Score=331.06 Aligned_cols=281 Identities=15% Similarity=0.299 Sum_probs=236.3
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc-----------eEEEEeccC------------CCEEEEEEccCC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----------FEMILQAHD------------HAIRSMVWSHND 198 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~-----------~~~~l~~h~------------~~V~sl~~spdg 198 (713)
.|.+.|++++|++++++||+|+.||.|+|||+.+.+ ....+.+|. ..|++++|++++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999998776 577888998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEEcCCCcee----------------------------------------eeeccCCCCeeEEEE
Q 005123 199 --NWMVSGDDGGAIKYWQNNMNNVK----------------------------------------ANKSAHKESVRDLSF 236 (713)
Q Consensus 199 --~~L~sgs~DG~I~vwdl~~~~~~----------------------------------------~~~~~~~~~V~~l~f 236 (713)
.+|++++.|+.|+|||+.++... .....|...|++++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764432 113578999999999
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCC-eeEEE-------EccCCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce---
Q 005123 237 CRTDLKFCSCSDDTTVKVWDFARC-QEERS-------LTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRE--- 304 (713)
Q Consensus 237 s~dg~~Las~s~Dg~I~iwDl~~~-~~~~~-------l~~h~~~V~sl~~spdg-~~L~sgs~Dg~I~IwDl~t~~~--- 304 (713)
++++++|+++ .|++|++||+++. +.+.. +..|...|.+++|++++ ++|++++.|+.|+|||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 8999999999843 33332 45788999999999998 9999999999999999999887
Q ss_pred -EEEEccCCC------------CeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeeEEEeecCCCC--------------
Q 005123 305 -LCSFHGHKN------------MVLCVKWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKD-------------- 356 (713)
Q Consensus 305 -~~~~~~h~~------------~I~si~fspdg~~Latgs~Dg~I~IwDl~t-~~~l~~~~~h~~~-------------- 356 (713)
+..+..|.. .|.+++|++++++|++++. +.|+|||+++ ++.+..+..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 788887776 8999999999999999999 9999999997 8888888888532
Q ss_pred -eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE-------------------------------ecccCCCeEEE
Q 005123 357 -VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI-------------------------------HNVHDNTVWDL 404 (713)
Q Consensus 357 -V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~-------------------------------~~~h~~~V~~l 404 (713)
+..++|++ ++.+|++++.||.|+|||+.++...... ...+...|.++
T Consensus 344 ~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 344 DKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred cceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 33499999 7899999999999999999876543211 01234578999
Q ss_pred EEcCCCcEEEE-eCCcEEEEec
Q 005123 405 AWHPIGYLLCS-NDHTTKFWCR 425 (713)
Q Consensus 405 ~~spdg~~laS-~Dg~v~iWd~ 425 (713)
+|+|++.+||. ..+.+.+|..
T Consensus 423 ~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 423 AWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp EECSSSSEEEEECSSCEEEEEC
T ss_pred EECCCCCEEEEEecceeeeecc
Confidence 99999988876 6677888864
No 57
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-35 Score=315.49 Aligned_cols=244 Identities=20% Similarity=0.421 Sum_probs=204.6
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC-------CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
+|...|++++|++++++|++|+.|+.|+|||+.+ .+.+..+.+|...|.+++|++++++|++++.|++|+|||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 4999999999999999999999999999999853 356778899999999999999999999999999999999
Q ss_pred cCCC----ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC--eeEEEEccCCCceEEEEEcCC--CCEEE
Q 005123 215 NNMN----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC--QEERSLTGHGWDVKSVDWHPT--KSLLV 286 (713)
Q Consensus 215 l~~~----~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~--~~~~~l~~h~~~V~sl~~spd--g~~L~ 286 (713)
++.. +.+..+..|...|.+++|++++.+|++++.|++|++||+.+. +.+..+.+|...|.+++|+++ +.+|+
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 9532 456677889999999999999999999999999999999776 567888999999999999998 67899
Q ss_pred EEeCCCcEEEEECCCC--------ceEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--eEE-EeecCC
Q 005123 287 SGGKDSLVKLWDAKSG--------RELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--ELE-SFRGHR 354 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~--------~~~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~--~l~-~~~~h~ 354 (713)
+++.|++|+|||++++ .....+.. |...|.+++|++++ +|++++.|+.|+|||+.+++ .+. .+..|.
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~ 294 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG 294 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc
Confidence 9999999999998754 33444444 88899999999654 89999999999999998774 333 335687
Q ss_pred C-CeEEEEEeCC-CCCEEEEEECCCcEEEEEcCC
Q 005123 355 K-DVTALAWHPF-HEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 355 ~-~V~sl~fsp~-~~~~lasgs~DG~I~Iwd~~~ 386 (713)
. .|.+++|++. ++.+|++++.||+|+|||+++
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 6 8999999984 578999999999999999854
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.4e-35 Score=324.43 Aligned_cols=281 Identities=17% Similarity=0.289 Sum_probs=248.3
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEc--cCCCEEEEEeCCCcEEEEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS--HNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~s--pdg~~L~sgs~DG~I~vwd 214 (713)
...+.+|.+.|++++|++++ +|++|+.||+|+|||+.+++.+..+..|...|.+++|+ +++++|++++.|+.|++||
T Consensus 155 ~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd 233 (464)
T 3v7d_B 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233 (464)
T ss_dssp EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence 34567899999999999988 99999999999999999999999999999999999998 5778999999999999999
Q ss_pred cCCCce-----------------------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC
Q 005123 215 NNMNNV-----------------------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271 (713)
Q Consensus 215 l~~~~~-----------------------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~ 271 (713)
+.+... ...+..|...|.++ ++++++|++++.|++|++||+++++.+..+.+|..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence 987652 44566778888877 56789999999999999999999999999999999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
.|.+++|++++++|++++.|+.|++||+++++.+.++.+|...|.+++|+ +++|++++.|+.|++||+++.+....+.
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 99999999999999999999999999999999999999999999999996 6899999999999999999988776664
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEec
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCR 425 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~ 425 (713)
+...+..++|++ ++.+|++++ ||.|+|||+++++.+......|...|++++|+.+..++++ .|+.+.+|-+
T Consensus 390 -~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 390 -HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp -CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred -CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEe
Confidence 667788889999 788999988 8999999998887665556778999999999855455554 6776666654
No 59
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.6e-35 Score=314.30 Aligned_cols=246 Identities=19% Similarity=0.321 Sum_probs=213.3
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
...+.+|...|++++|++++++|++++.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|++||+.
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeee--ccCCCCeeEEEEecCC----------CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCE
Q 005123 217 MNNVKANK--SAHKESVRDLSFCRTD----------LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 217 ~~~~~~~~--~~~~~~V~~l~fs~dg----------~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~ 284 (713)
........ ..|...|.+++|++++ .+|++++.|++|++|| .+.+....+..|...|.+++|++++++
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence 44332221 3688899999999987 7899999999999999 456677788899999999999999999
Q ss_pred EEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE--Eee----------
Q 005123 285 LVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--SFR---------- 351 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~--~~~---------- 351 (713)
|++++.|+.|+|||+++. .....+. +...|.+++|++++.+|+++ .|+.|+|||+.+.+... .+.
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 305 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred EEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence 999999999999999543 3444443 45679999999999887655 57789999998766433 333
Q ss_pred -cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 352 -GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 352 -~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+|...|.+++|++ ++.+|++|+.||.|++|++++
T Consensus 306 ~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 306 KGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCSCCCEEEEEECS-SSCCEEEEETTSEEEEEEEEE
T ss_pred cCCCCceEEEEECC-CCCeEEEecCCceEEEEEEEc
Confidence 6778899999999 789999999999999999854
No 60
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.4e-35 Score=326.78 Aligned_cols=278 Identities=22% Similarity=0.454 Sum_probs=245.6
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
..+|...|+|++| ++++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||+++++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 3467788999988 7999999999999999999999999999999999999999 78999999999999999999999
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE---EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE---RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~---~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
.+..+..|...|.+++|+ +.+|++++.|++|++||+++.+.. ..+.+|...|.+++| ++++|++++.|+.|++
T Consensus 205 ~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 205 MLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV 280 (435)
T ss_dssp EEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred EEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 999999999999999996 569999999999999999877654 677889999999999 6889999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
||+++++.+..+..|...|.+++| ++++|++|+.|+.|++||+++++.+..+.+|...|.+++| ++.+|++++.|
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~d 355 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYD 355 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETT
T ss_pred EECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCC
Confidence 999999999999999999999999 5789999999999999999999999999999999999998 57899999999
Q ss_pred CcEEEEEcCCCCc--------eEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 377 GSIFHWLVGHETP--------QVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 377 G~I~Iwd~~~~~~--------~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
|.|++||+.+... .......|.+.|++++|+....+.++.|++|+|||+.....
T Consensus 356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC------
T ss_pred CcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCC
Confidence 9999999855431 55667789999999999433333334899999999976544
No 61
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.7e-34 Score=317.11 Aligned_cols=279 Identities=24% Similarity=0.439 Sum_probs=239.7
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
-.+++|+||.+ ++||+|. |++|+|||..+++....+. .|...|++|+|++++++|++|+.||.|+|||+++++.+.
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 45788999975 5777765 8999999999999887765 567789999999999999999999999999999999999
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
.+..|...|.++++ ++.+|++++.|+.+++||.... ..+..+.+|...+..+.|++++++|++++.|+.|+|||..+
T Consensus 184 ~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 99999999999887 5789999999999999998764 45677889999999999999999999999999999999987
Q ss_pred Cc----eEEEEccCCCCeEEEEEcCCC-CEEEEE--ECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 302 GR----ELCSFHGHKNMVLCVKWNQNG-NWVLTA--SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 302 ~~----~~~~~~~h~~~I~si~fspdg-~~Latg--s~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
++ .+.....|...|.+++|++++ .+|+++ +.|++|+|||+++++.+..+..+ ..+.++.|++ +++.|++++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~-~~~~lv~~s 339 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSP-HYKELISGH 339 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEET-TTTEEEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecC-CCCeEEEEE
Confidence 65 355677889999999999964 555554 47999999999999999888754 5789999999 566666554
Q ss_pred --CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 375 --LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 375 --~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
.|+.|+|||+.+... +..+.+|.+.|++|+|++|+.+|++ .|++|+|||+.....
T Consensus 340 g~~d~~I~iwd~~~~~~-v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 340 GFAQNQLVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CTTTCCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred ecCCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 799999999987664 4556789999999999999977754 899999999865443
No 62
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.5e-36 Score=319.64 Aligned_cols=252 Identities=17% Similarity=0.312 Sum_probs=211.6
Q ss_pred EEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 005123 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAI 210 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~DG~I 210 (713)
++...+.+|.+.|++++|++++++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|++ ++++|++++.|++|
T Consensus 4 ~~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 4 VINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp ----------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred eeeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 3456678999999999999999999999999999999998764 4677899999999999986 48999999999999
Q ss_pred EEEEcCCCc--eeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCee---EEEEccCCCceEEEEEcCC--
Q 005123 211 KYWQNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPT-- 281 (713)
Q Consensus 211 ~vwdl~~~~--~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~~---~~~l~~h~~~V~sl~~spd-- 281 (713)
+|||+++++ ....+..|...|++++|+++ +.+|++++.|++|++||+++... ...+.+|...|.+++|+++
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 999998873 55667789999999999998 78999999999999999987532 3445678889999999987
Q ss_pred ---------------CCEEEEEeCCCcEEEEECCCC---ceEEEEccCCCCeEEEEEcCCC----CEEEEEECCCeEEEE
Q 005123 282 ---------------KSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLCVKWNQNG----NWVLTASKDQIIKLY 339 (713)
Q Consensus 282 ---------------g~~L~sgs~Dg~I~IwDl~t~---~~~~~~~~h~~~I~si~fspdg----~~Latgs~Dg~I~Iw 339 (713)
+++|++++.|++|+|||+++. +.+..+.+|...|.+++|++++ ++|++++.|++|+||
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 468999999999999999765 4566788899999999999986 899999999999999
Q ss_pred ECCCC---e-eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 340 DIRAM---K-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 340 Dl~t~---~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
|+++. + ....+..|...|.+++|++ ++.+|++++.|++|+||+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECTT
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECCC
Confidence 99762 1 2234567889999999999 7899999999999999998543
No 63
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.3e-36 Score=327.40 Aligned_cols=250 Identities=19% Similarity=0.336 Sum_probs=224.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc-------eEEEEeccCCCEEEEEEccCC-CEEEEEeCCCc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-------FEMILQAHDHAIRSMVWSHND-NWMVSGDDGGA 209 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~-------~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~ 209 (713)
..+..|...|.+++|++++++|++|+.|+.|+|||+.+.. ....+.+|.+.|.+++|++++ ..|++++.|++
T Consensus 102 ~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~ 181 (380)
T 3iz6_a 102 HAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181 (380)
T ss_dssp EEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred eEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence 3567899999999999999999999999999999986532 345678999999999999974 57999999999
Q ss_pred EEEEEcCCCceeeee-----ccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcC-CCeeEEEEccCCCceEEEEEcCCC
Q 005123 210 IKYWQNNMNNVKANK-----SAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWDVKSVDWHPTK 282 (713)
Q Consensus 210 I~vwdl~~~~~~~~~-----~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~-~~~~~~~l~~h~~~V~sl~~spdg 282 (713)
|++||+++++.+..+ ..|...|.+++|++ ++++|++++.|++|++||++ ..+.+..+.+|...|++++|+|++
T Consensus 182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence 999999999887766 57889999999977 78999999999999999997 456788899999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEccCC-------CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEe----e
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRELCSFHGHK-------NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF----R 351 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-------~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~----~ 351 (713)
++|++++.|++|+|||+++++.+..+..+. ..|++++|++++++|++|+.|+.|+|||+.+++.+..+ .
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 341 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN 341 (380)
T ss_dssp SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCS
T ss_pred CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccC
Confidence 999999999999999999999888876433 24899999999999999999999999999999888777 6
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
+|...|++++|++ ++.+|++|+.|++|+||++....
T Consensus 342 ~h~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 342 SHEGRISCLGLSS-DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCCCCCCEEEECS-SSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCceEEEEECC-CCCEEEEeeCCCCEEEEecCCCc
Confidence 7999999999999 89999999999999999997554
No 64
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-34 Score=320.20 Aligned_cols=280 Identities=23% Similarity=0.397 Sum_probs=251.6
Q ss_pred EeeCCCCCce-EEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSI-NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V-~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..+.+|.+.| +|+. .++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+ +++|++++.||.|++||++
T Consensus 112 ~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 4577899875 5544 468999999999999999999999999999999999999997 6799999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
+++.+..+..|...|.+++|+ ++.|++++.|++|++||+++++.+..+..|...|.+++| ++++|++++.|+.|++
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence 999999999999999999995 678999999999999999999999999999999999999 6889999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
||+++++.+..+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...+.++.++ +++|++++.|
T Consensus 264 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d 338 (445)
T 2ovr_B 264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNAD 338 (445)
T ss_dssp EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETT
T ss_pred EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCC
Confidence 999999999999999999999999 88999999999999999999999999999999999999885 5699999999
Q ss_pred CcEEEEEcCCCCceEEEec--ccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 377 GSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
|.|++||+++......+.. .|...|++++|+++..++++.|+.|+|||++....
T Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce
Confidence 9999999987765444432 37889999999765444455899999999976543
No 65
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=314.86 Aligned_cols=292 Identities=18% Similarity=0.242 Sum_probs=242.7
Q ss_pred eeCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEe-------------ccCCCEEEEEEcc-CCCEEEE
Q 005123 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQ-------------AHDHAIRSMVWSH-NDNWMVS 203 (713)
Q Consensus 139 ~l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~-------------~h~~~V~sl~~sp-dg~~L~s 203 (713)
.+.+|.+.|++++|++ ++++||+|+.||.|+|||+.+.+....+. .|...|.+++|++ ++++|++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 5678999999999999 99999999999999999999876554443 5999999999999 7789999
Q ss_pred EeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecC---CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC
Q 005123 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d---g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp 280 (713)
++.||.|++||+.+++....+. +...+.++.|++. +.+|++++.|+.|++||+++++.+..+..|...|.+++|++
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred EeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence 9999999999999998877765 6788999999884 45999999999999999999999999999999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCCc-eEEEE---------------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 281 TKS-LLVSGGKDSLVKLWDAKSGR-ELCSF---------------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 281 dg~-~L~sgs~Dg~I~IwDl~t~~-~~~~~---------------~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
+++ +|++++.|+.|++||+++++ .+..+ ..|...|++++|++++++|++++.|+.|++||+++
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 988 68999999999999998765 33433 46788999999999999999999999999999999
Q ss_pred CeeEEEeecCC----CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eC
Q 005123 344 MKELESFRGHR----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--ND 417 (713)
Q Consensus 344 ~~~l~~~~~h~----~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~D 417 (713)
++.+..+..+. .....+.+.......+++++.|+.|++||+.+.. .+..+..|...|++++|++++.+|++ .|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE-QITMLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC-EEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc-ceeeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 87765443321 1111222323356677778889999999997766 45556689999999999999977754 89
Q ss_pred CcEEEEecCCCCCcc
Q 005123 418 HTTKFWCRNRPGDTA 432 (713)
Q Consensus 418 g~v~iWd~~~~~~~~ 432 (713)
+.|+||+++......
T Consensus 356 g~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 356 CNILAWVPSLYEPVP 370 (408)
T ss_dssp SCEEEEEECC-----
T ss_pred CeEEEEeCCCCCccC
Confidence 999999998765543
No 66
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.3e-35 Score=307.01 Aligned_cols=250 Identities=21% Similarity=0.367 Sum_probs=215.9
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEE
Q 005123 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN--NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVW 255 (713)
Q Consensus 180 ~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~--~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iw 255 (713)
..+.+|.+.|++++|++++++|++|+.|++|+|||++.. +.+..+.+|...|++++|++ ++++|++++.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 456789999999999999999999999999999999753 56778889999999999986 48999999999999999
Q ss_pred EcCCCe--eEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eEEEEccCCCCeEEEEEcCC------
Q 005123 256 DFARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQN------ 323 (713)
Q Consensus 256 Dl~~~~--~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h~~~I~si~fspd------ 323 (713)
|+++++ .+..+..|...|.+++|+++ +.+|++++.|++|++||++++. ....+.+|...|.+++|+++
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998764 55677889999999999997 8899999999999999998763 24567789999999999996
Q ss_pred -------CCEEEEEECCCeEEEEECCCCe----eEEEeecCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCCCc-
Q 005123 324 -------GNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETP- 389 (713)
Q Consensus 324 -------g~~Latgs~Dg~I~IwDl~t~~----~l~~~~~h~~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~~~- 389 (713)
+++|++|+.|++|+|||+++++ .+..+.+|...|.+++|+|+. +.+|++++.|++|+|||++....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 5799999999999999998765 567888999999999999943 58999999999999999976432
Q ss_pred -eEEEe--cccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 390 -QVEIH--NVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 390 -~~~~~--~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
..... ..|...|++++|++++.+|++ .|++|+||+.+..+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 22333 457889999999999977764 89999999986543
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.9e-35 Score=363.94 Aligned_cols=247 Identities=19% Similarity=0.378 Sum_probs=231.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|.+.|++++|++++++||+|+.||.|+|||+.+++.+..+.+|...|.+++|++++++|++++.|+.|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 218 NNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
++.+..+..|...|.+++|++ ++.++++++.|++|++||+++++.+..+.+|...|++++|++++++|++++.|+.|+
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~ 768 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEE
Confidence 999999999999999999999 556899999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceEEEE-------------------------------------------------------ccCCCCeEEEEE
Q 005123 296 LWDAKSGRELCSF-------------------------------------------------------HGHKNMVLCVKW 320 (713)
Q Consensus 296 IwDl~t~~~~~~~-------------------------------------------------------~~h~~~I~si~f 320 (713)
+||+++++....+ .+|...|.+++|
T Consensus 769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 848 (1249)
T 3sfz_A 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848 (1249)
T ss_dssp EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEE
T ss_pred EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEE
Confidence 9999876544332 156778999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 321 NQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 321 spdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
+++++++++++.|+.|++||+.+++.+..+.+|...|++++|++ ++.+|++++.||.|++||+.
T Consensus 849 sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 849 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp CSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHH
T ss_pred cCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEcc
Confidence 99999999999999999999999999999999999999999999 78999999999999999853
No 68
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.3e-35 Score=309.11 Aligned_cols=252 Identities=19% Similarity=0.323 Sum_probs=224.6
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC----ceEEEEeccCCCEEEEEEcc--CCCEEEEEeCCCcEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIK 211 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~----~~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~DG~I~ 211 (713)
..+.+|++.|++++|++++++||+++.||.|+|||+.+. +....+..|...|++++|++ |+++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456899999999999999999999999999999998876 46677889999999999999 699999999999999
Q ss_pred EEEcCCC---------ceeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCeeEEEEc-------------
Q 005123 212 YWQNNMN---------NVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLT------------- 267 (713)
Q Consensus 212 vwdl~~~---------~~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~~~~~l~------------- 267 (713)
|||++++ +....+..|...|.+++|+++ +++|++++.|+.|++||+++.+.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999887 456777889999999999999 9999999999999999998765433222
Q ss_pred cCCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCce--EEEEccCCCCeEEEEEcCCC----CEEEEEECCCeEEE
Q 005123 268 GHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNG----NWVLTASKDQIIKL 338 (713)
Q Consensus 268 ~h~~~V~sl~~spd---g~~L~sgs~Dg~I~IwDl~t~~~--~~~~~~h~~~I~si~fspdg----~~Latgs~Dg~I~I 338 (713)
.+...+.+++|+++ +++|++++.|+.+.+|+...++. +..+.+|...|++++|++++ ++|++++.|+.|+|
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 57788999999997 89999999999998888887765 66778899999999999998 89999999999999
Q ss_pred EECCCC----------------------------------------------eeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 339 YDIRAM----------------------------------------------KELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 339 wDl~t~----------------------------------------------~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
||++++ +.+..+.+|...|++++|++ ++++|++
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s 323 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSS 323 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEE
Confidence 999864 66778889999999999999 7899999
Q ss_pred EECCCcEEEEEcCCCCce
Q 005123 373 GSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~ 390 (713)
++.||.|+|||+.++...
T Consensus 324 ~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp EETTSCEEEEEECTTSCE
T ss_pred ecCCCcEEEEecCcCcch
Confidence 999999999999876544
No 69
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.9e-35 Score=308.83 Aligned_cols=277 Identities=16% Similarity=0.144 Sum_probs=240.9
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc---eEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN---FEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~---~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl 215 (713)
..+|.+.|++++|++++++|++++.|+.|+|||+.+.+ ....+..|...|++++|+++++ +|++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 45899999999999999999999999999999998876 3455668999999999999999 9999999999999999
Q ss_pred -CCCceeeeecc--CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCCceEEEEEcCCCC
Q 005123 216 -NMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 216 -~~~~~~~~~~~--~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~~V~sl~~spdg~ 283 (713)
++++. ..+.. |...|.+++|++ +++|++++.|+.|++||+++ .+.+..+. +...|.+++|++++
T Consensus 87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence 77765 55677 999999999999 99999999999999999987 55555555 88899999999876
Q ss_pred EEEEEeCCCcEEEEECCC-Cce--EEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC------eeEEEeecC
Q 005123 284 LLVSGGKDSLVKLWDAKS-GRE--LCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM------KELESFRGH 353 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t-~~~--~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~------~~l~~~~~h 353 (713)
|++++.|+.|++||+++ +.. ......+...|.+++|++ ++++|++++.|+.|+|||++.. +.+..+..|
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 99999999999999998 543 344556788999999999 9999999999999999999887 777888888
Q ss_pred CC---------CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEeccc-CCCeEEEEEcCCCcEEEE--eCCc-E
Q 005123 354 RK---------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCS--NDHT-T 420 (713)
Q Consensus 354 ~~---------~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~laS--~Dg~-v 420 (713)
.. .|++++|++ ++++|++++.||.|++||+.+... +..+..| ...|++++ +++.+|++ .|++ .
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~ 317 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKK-IKNFAKFNEDSVVKIA--CSDNILCLATSDDTFK 317 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEE-EEECCCCSSSEEEEEE--ECSSEEEEEEECTHHH
T ss_pred cccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhH-hhhhhcccCCCceEec--CCCCeEEEEecCCccc
Confidence 65 999999999 788999999999999999987764 4445566 99999999 88866654 8998 6
Q ss_pred EEEec
Q 005123 421 KFWCR 425 (713)
Q Consensus 421 ~iWd~ 425 (713)
+.|..
T Consensus 318 ~~~~~ 322 (342)
T 1yfq_A 318 TNAAI 322 (342)
T ss_dssp HCSSS
T ss_pred ccccc
Confidence 65554
No 70
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-36 Score=340.69 Aligned_cols=273 Identities=10% Similarity=0.053 Sum_probs=217.1
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCceE----EEEeccCCCEEEEEEccC------CCEEEEEeCCCcEEEEEcCCCce---
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFNFE----MILQAHDHAIRSMVWSHN------DNWMVSGDDGGAIKYWQNNMNNV--- 220 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~~~----~~l~~h~~~V~sl~~spd------g~~L~sgs~DG~I~vwdl~~~~~--- 220 (713)
++++.|++++.|++|+|||+.+++.. ..+..|.+.|.+|+|+++ +.+||+++.||+|+|||+.++..
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 33444555668899999998876642 346677899999999986 57999999999999999987642
Q ss_pred --------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe-eEEEEccCCCceEEE--EEcCCC-CEEEEE
Q 005123 221 --------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSV--DWHPTK-SLLVSG 288 (713)
Q Consensus 221 --------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~-~~~~l~~h~~~V~sl--~~spdg-~~L~sg 288 (713)
...+..|...|++++|+++ ..|++|+.||+|++||++++. ....+.+|...|.+| +|++++ .+|+++
T Consensus 251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 251 VFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp EEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred cceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 2356678899999999975 489999999999999998763 455688899999999 567787 899999
Q ss_pred eCCCcEEEEECCCCceEEEEccCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCC
Q 005123 289 GKDSLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH 366 (713)
Q Consensus 289 s~Dg~I~IwDl~t~~~~~~~~~h~~--~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~ 366 (713)
+.|++|+|||+++++++..+.+|.. .|.+++|+|++..|++++.|++|+|||++++.++..+.+|...|++|+|+| +
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~ 408 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-L 408 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-S
T ss_pred ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-C
Confidence 9999999999999887777766543 588999999999999999999999999999998888999999999999999 7
Q ss_pred CCEEEEEECCCcEEEEEcCCCC-------------------------------------------ceEEEecccCCCeEE
Q 005123 367 EEYFVSGSLDGSIFHWLVGHET-------------------------------------------PQVEIHNVHDNTVWD 403 (713)
Q Consensus 367 ~~~lasgs~DG~I~Iwd~~~~~-------------------------------------------~~~~~~~~h~~~V~~ 403 (713)
+.+|++|+.||+|+|||+.... .....+.+|...|++
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~ 488 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITC 488 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCC
T ss_pred CCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEE
Confidence 8899999999999999853210 001122347788999
Q ss_pred EEEcCCC---cEEEE--eCCcEEEEecCCC
Q 005123 404 LAWHPIG---YLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 404 l~~spdg---~~laS--~Dg~v~iWd~~~~ 428 (713)
|+|++++ .++|+ .||.||||++...
T Consensus 489 Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 489 TKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp EEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred EECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 9999996 47765 7899999998553
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.6e-35 Score=317.36 Aligned_cols=279 Identities=11% Similarity=0.098 Sum_probs=227.6
Q ss_pred CCceEEEEEccCCCEEEEEECCC-------cEEEEeCCCCce----------EEEEeccCCCEEEEEEccCCCEEEEEe-
Q 005123 144 RCSINRVLWTPTGRRLITGSQSG-------EFTLWNGQSFNF----------EMILQAHDHAIRSMVWSHNDNWMVSGD- 205 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg-------~V~Iwd~~t~~~----------~~~l~~h~~~V~sl~~spdg~~L~sgs- 205 (713)
.-+|+|++|++|+++||+|+.+. .|+||++..... ...+..|+..|.+++++ ++.+++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999997643 599999765432 22456788889888874 56676654
Q ss_pred ----------CCCcEEEEEcCCCceeee---------eccCCCCeeEEEEecCCCEEEEEE--CCCeEEEEEcCCCeeEE
Q 005123 206 ----------DGGAIKYWQNNMNNVKAN---------KSAHKESVRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEER 264 (713)
Q Consensus 206 ----------~DG~I~vwdl~~~~~~~~---------~~~~~~~V~~l~fs~dg~~Las~s--~Dg~I~iwDl~~~~~~~ 264 (713)
.|+.|++|+++..+.... ...+...+.+++|++|+++|++++ .|++|+|||+++++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 567899999876532111 122345689999999999987655 68999999999999988
Q ss_pred EEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECCC----eEEE
Q 005123 265 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQ----IIKL 338 (713)
Q Consensus 265 ~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~Dg----~I~I 338 (713)
.+. |...|.+|+|+||+++|++++. +.+++|+..+++.+.. ...|...|.+++|++++++|++++.|+ .|++
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred EeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 886 7788999999999999999985 4577777777776544 345788899999999999999999887 6889
Q ss_pred EECCCCee----EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE
Q 005123 339 YDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 339 wDl~t~~~----l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 414 (713)
||+..... ...+..|...|++++|+| ++++||+|+.|++|+|||+++.+.+..+..+|...|++|+|+||+.+|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred cccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence 99876653 456778999999999999 8999999999999999999888777777789999999999999998887
Q ss_pred E--eCCcEEEEecCC
Q 005123 415 S--NDHTTKFWCRNR 427 (713)
Q Consensus 415 S--~Dg~v~iWd~~~ 427 (713)
| .|++||||++..
T Consensus 329 S~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 329 SVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTSEEEEEECCT
T ss_pred EEeCCCeEEEEEcCC
Confidence 5 999999999853
No 72
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.9e-35 Score=323.73 Aligned_cols=281 Identities=18% Similarity=0.269 Sum_probs=241.6
Q ss_pred ceEEEEEccCCCEEE-EEECCCcEEEEeCCCC----ceEEEEeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCC-
Q 005123 146 SINRVLWTPTGRRLI-TGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMN- 218 (713)
Q Consensus 146 ~V~~v~~spdg~~La-tgs~dg~V~Iwd~~t~----~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~~~- 218 (713)
....++++++...++ +++.||.|+|||+.+. +....+.+|.+.|++++|++ ++++|++++.||.|+|||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 345688888775444 5788999999998664 23445778999999999999 8999999999999999999987
Q ss_pred ------ceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEE--ccCCCceEEEEEcCCCCEEEEEe
Q 005123 219 ------NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSL--TGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 219 ------~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l--~~h~~~V~sl~~spdg~~L~sgs 289 (713)
+.+..+..|...|++++|++++ ++|++++.|++|++||+++++.+..+ ..|...|.+++|++++++|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 5567788899999999999998 69999999999999999999999999 78999999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEE-ccCCCC-eEEEEEcCCCCEEEEE---ECCCeEEEEECCCCee-EEEee-cCCCCeEEEEE
Q 005123 290 KDSLVKLWDAKSGRELCSF-HGHKNM-VLCVKWNQNGNWVLTA---SKDQIIKLYDIRAMKE-LESFR-GHRKDVTALAW 362 (713)
Q Consensus 290 ~Dg~I~IwDl~t~~~~~~~-~~h~~~-I~si~fspdg~~Latg---s~Dg~I~IwDl~t~~~-l~~~~-~h~~~V~sl~f 362 (713)
.|+.|+|||+++++.+..+ ..|... +.+++|++++++|+++ +.|+.|+|||+++++. +.... .|...|.+++|
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 9999999999999999888 677765 8999999999999999 7899999999998664 33332 46788999999
Q ss_pred eCCCCCEEE-EEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEEEeCCcEEEEecCC
Q 005123 363 HPFHEEYFV-SGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 363 sp~~~~~la-sgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~ 427 (713)
++ ++.+|+ +++.||.|++||+.+....+..+.. |...|.+++|++++.++++.|+.+++|++..
T Consensus 276 s~-~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 276 DP-DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp ET-TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred cC-CCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 99 566665 5667999999999887753333333 5689999999999999999999999999975
No 73
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-34 Score=313.86 Aligned_cols=247 Identities=15% Similarity=0.219 Sum_probs=225.5
Q ss_pred eeCCCCCceEEEEEccC----C---CEEEEEECCCcEEEEeCCCCce-----EEEEecc-----CCCEEEEEEc----cC
Q 005123 139 SLNKNRCSINRVLWTPT----G---RRLITGSQSGEFTLWNGQSFNF-----EMILQAH-----DHAIRSMVWS----HN 197 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spd----g---~~Latgs~dg~V~Iwd~~t~~~-----~~~l~~h-----~~~V~sl~~s----pd 197 (713)
.+.+|...|++++|+++ + ++|++++.|+.|+|||+.+.+. ...+..| ...|.+++|+ ++
T Consensus 57 ~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 136 (397)
T 1sq9_A 57 SHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 136 (397)
T ss_dssp EEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC---
T ss_pred EEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC
Confidence 44589999999999999 9 9999999999999999998887 8888888 5999999999 99
Q ss_pred CCE-EEEEeCCCcEEEEEcCC------Cceee-----ee-------ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC
Q 005123 198 DNW-MVSGDDGGAIKYWQNNM------NNVKA-----NK-------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (713)
Q Consensus 198 g~~-L~sgs~DG~I~vwdl~~------~~~~~-----~~-------~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~ 258 (713)
+++ |++++.||.|++||+.+ ++.+. .+ ..|...|.+++|++++ +|++++.|+.|++||++
T Consensus 137 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 137 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 215 (397)
T ss_dssp -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC
Confidence 999 99999999999999988 65554 55 4478899999999999 99999999999999999
Q ss_pred CCeeEEEEcc---C---CCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEcc-------------CCCCeE
Q 005123 259 RCQEERSLTG---H---GWDVKSVDWHPTKSLLVSGGKD---SLVKLWDAKSGRELCSFHG-------------HKNMVL 316 (713)
Q Consensus 259 ~~~~~~~l~~---h---~~~V~sl~~spdg~~L~sgs~D---g~I~IwDl~t~~~~~~~~~-------------h~~~I~ 316 (713)
+++.+..+.. | ...|.+++|++++++|++++.| +.|++||+++++.+..+.. |...|.
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 295 (397)
T 1sq9_A 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295 (397)
T ss_dssp TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEE
Confidence 9999999998 8 9999999999999999999999 9999999999999999988 999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee------cC---------------CCCeEEEEEeCCCC--------
Q 005123 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR------GH---------------RKDVTALAWHPFHE-------- 367 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~------~h---------------~~~V~sl~fsp~~~-------- 367 (713)
+++|++++++|++++.|+.|+|||+++++.+..+. .| ...|++++|++ ++
T Consensus 296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~ 374 (397)
T 1sq9_A 296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGAD 374 (397)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc-cccccccccc
Confidence 99999999999999999999999999999999999 88 89999999999 55
Q ss_pred --CEEEEEECCCcEEEEEcCCC
Q 005123 368 --EYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 368 --~~lasgs~DG~I~Iwd~~~~ 387 (713)
.+|++++.||.|+|||++++
T Consensus 375 ~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 375 LNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSCEEEEEETTTEEEEEEEEC-
T ss_pred ccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998664
No 74
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=295.36 Aligned_cols=274 Identities=24% Similarity=0.434 Sum_probs=232.5
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+++|+||+++ +||+|. |++|+|||+++++.+..+. .|...|++++|++++++|++|+.||+|+|||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5789999886 676664 9999999999999888775 56778999999999999999999999999999999999999
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
..|...+.++.+ ++..|++++.++.+++|+.... ..+..+.+|...+.++.+++++++|++++.|+.|+|||+++++
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 999988877665 5779999999999999998765 4566778899999999999999999999999999999999865
Q ss_pred e----EEEEccCCCCeEEEEEcCCCCEE---EEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE--
Q 005123 304 E----LCSFHGHKNMVLCVKWNQNGNWV---LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-- 374 (713)
Q Consensus 304 ~----~~~~~~h~~~I~si~fspdg~~L---atgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs-- 374 (713)
. ......+...|.++++++++..+ ++++.++.|+|||.+......... +...+..+.|++ .+..+++++
T Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~ 261 (318)
T 4ggc_A 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGF 261 (318)
T ss_dssp TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECT
T ss_pred ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEc
Confidence 3 34556688899999999965433 355678999999999887766554 777899999999 556555544
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
.|+.|+|||+++... +..+.+|.+.|++|+|++++.+|++ .|++|+|||+..
T Consensus 262 ~d~~i~iwd~~~~~~-~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TTCCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 799999999987664 5556789999999999999977754 999999999854
No 75
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=309.68 Aligned_cols=251 Identities=20% Similarity=0.328 Sum_probs=223.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCC--CCceEEEEeccCCCEEEEEEccC--CCEEEEEeCCCcEEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYW 213 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~--t~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~DG~I~vw 213 (713)
..+.+|.+.|++++|++++++||+|+.||.|+|||+. +.+.+..+..|...|++++|+++ +++|++++.||.|+||
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 4567899999999999999999999999999999987 56677888999999999999977 8999999999999999
Q ss_pred EcCCCc--eeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCe--eEEEEccCCCceEEEEEcC-------
Q 005123 214 QNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHP------- 280 (713)
Q Consensus 214 dl~~~~--~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~--~~~~l~~h~~~V~sl~~sp------- 280 (713)
|+++++ ....+..|...|.+++|+++ +.+|++++.|+.|++||+++.. ....+..|...|.+++|++
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 999986 66777789999999999999 9999999999999999998763 4456678999999999999
Q ss_pred ------CCCEEEEEeCCCcEEEEECCCCc----eEEEEccCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCe--
Q 005123 281 ------TKSLLVSGGKDSLVKLWDAKSGR----ELCSFHGHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMK-- 345 (713)
Q Consensus 281 ------dg~~L~sgs~Dg~I~IwDl~t~~----~~~~~~~h~~~I~si~fspd---g~~Latgs~Dg~I~IwDl~t~~-- 345 (713)
++++|++++.|+.|++||+++++ .+..+..|...|++++|+++ +++|++++.|+.|+|||+++++
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 244 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 244 (379)
T ss_dssp -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence 69999999999999999998765 44567789999999999999 8999999999999999999863
Q ss_pred ---eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 346 ---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 346 ---~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
.+.....|...|++++|++ ++.+|++++.||.|+||+++....
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 245 WKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp CEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEETTE
T ss_pred ceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCc
Confidence 2223334888999999999 788999999999999999975543
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.3e-34 Score=334.19 Aligned_cols=246 Identities=27% Similarity=0.457 Sum_probs=220.1
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
...+.+|...|++++|++++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|+|||+.
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeeee---ccCCCCeeEEEEecCC--CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 217 MNNVKANK---SAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 217 ~~~~~~~~---~~~~~~V~~l~fs~dg--~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
........ ..|...|.+++|++++ ..|++++.|++|++||+++.+....+.+|...|++++|++++++|++++.|
T Consensus 503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 65433322 4688899999999987 579999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-----------------
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR----------------- 354 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~----------------- 354 (713)
++|+|||+++++.+..+. +...|.+++|++++.+|++++ |+.|+|||+++++.+..+..+.
T Consensus 583 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (694)
T 3dm0_A 583 GVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660 (694)
T ss_dssp SBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------
T ss_pred CeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCc
Confidence 999999999999887776 456799999999998887765 5669999999998887765332
Q ss_pred --CCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 355 --KDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 355 --~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
..+++++|++ ++++|++|+.||.|+||++.
T Consensus 661 ~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 661 KVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred eeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 1378999999 89999999999999999985
No 77
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-33 Score=351.25 Aligned_cols=290 Identities=23% Similarity=0.356 Sum_probs=257.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEcc--CCCEEEEEeCCCcEEEEEc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~DG~I~vwdl 215 (713)
..+.+|.+.|++++|++++++||+++.|+.|+|||+.+++.+..+..|...|.+++|++ ++.++++++.|+.|++||+
T Consensus 651 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~ 730 (1249)
T 3sfz_A 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEET
T ss_pred EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEEC
Confidence 35678999999999999999999999999999999999999999999999999999999 4568999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-----------------------------
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL----------------------------- 266 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l----------------------------- 266 (713)
++++....+..|...|++++|++++++|++++.||+|++||+.+++....+
T Consensus 731 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 731 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp TSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred CCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 999999999999999999999999999999999999999998766543322
Q ss_pred --------------------------ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEE
Q 005123 267 --------------------------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 320 (713)
Q Consensus 267 --------------------------~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~f 320 (713)
.+|...|.+++|+++++++++++.|+.|++||+.+++.+..+.+|...|++++|
T Consensus 811 ~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 890 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF 890 (1249)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEE
Confidence 156778999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECC----------------------------------------------------------
Q 005123 321 NQNGNWVLTASKDQIIKLYDIR---------------------------------------------------------- 342 (713)
Q Consensus 321 spdg~~Latgs~Dg~I~IwDl~---------------------------------------------------------- 342 (713)
++++++|++++.|+.|++||+.
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 970 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence 9999999999999988888843
Q ss_pred ---------------------CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCe
Q 005123 343 ---------------------AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (713)
Q Consensus 343 ---------------------t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V 401 (713)
+++.+..+.+|...|++++|++ ++++|++++.||.|++||+.++.. .....|...|
T Consensus 971 p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~v 1047 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDY--VFLQAHQETV 1047 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEE--ECCBCCSSCE
T ss_pred CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCce--EEEecCCCcE
Confidence 2233445567888999999999 789999999999999999977653 3455789999
Q ss_pred EEEEEcCCCcEEEE-eCCcEEEEecCCCCC
Q 005123 402 WDLAWHPIGYLLCS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 402 ~~l~~spdg~~laS-~Dg~v~iWd~~~~~~ 430 (713)
.+++|++++.++++ .|++|++||+.....
T Consensus 1048 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A 1048 KDFRLLQDSRLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp EEEEECSSSEEEEEESSSEEEEEETTTTCC
T ss_pred EEEEEcCCCcEEEEECCCcEEEEECCCCce
Confidence 99999999977754 999999999976543
No 78
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.5e-34 Score=325.18 Aligned_cols=280 Identities=18% Similarity=0.305 Sum_probs=252.5
Q ss_pred eeCCCCCc-eEEEEEcc--CCCEEEEEECCCcEEEEeCCCC--------ceEEEEeccCCCEEEEEEccCCCEEEEEeCC
Q 005123 139 SLNKNRCS-INRVLWTP--TGRRLITGSQSGEFTLWNGQSF--------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 139 ~l~~H~~~-V~~v~~sp--dg~~Latgs~dg~V~Iwd~~t~--------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 207 (713)
.+.+|.+. |++++|++ ++++||+++.||.|+|||+.++ +....+..|...|.+++|++++++|++++.+
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 137 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 137 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC
Confidence 56789999 99999999 9999999999999999999744 6777888899999999999999999999987
Q ss_pred ----CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCeeEEEEccCCC---ceEEEEEc
Q 005123 208 ----GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLTGHGW---DVKSVDWH 279 (713)
Q Consensus 208 ----G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~---~V~sl~~s 279 (713)
+.|++|| .++.+..+..|...|.+++|++++. .|++++.|+.|++||+.+++.+..+..|.. .|.+++|+
T Consensus 138 ~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 138 RDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp SSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred CCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC
Confidence 6788887 6677788889999999999999998 899999999999999999999999999998 99999999
Q ss_pred CC-CCEEEEEeCCCcEEEEECCCCceEEEE-c---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC-
Q 005123 280 PT-KSLLVSGGKDSLVKLWDAKSGRELCSF-H---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH- 353 (713)
Q Consensus 280 pd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~-~---~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h- 353 (713)
++ +++|++++.|+.|++||+++++.+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence 99 999999999999999999999999988 5 799999999999 9999999999999999999999999998877
Q ss_pred ---CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecC
Q 005123 354 ---RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426 (713)
Q Consensus 354 ---~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~ 426 (713)
...+.++.|+ ++.+|++++.||.|++||+.+.. ....+..|...|++++| ++ .+.++.|+.|++|+++
T Consensus 295 ~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 295 QQLGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDE-VLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp TCGGGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEE-EEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT
T ss_pred CcccCceeEEEeC--CCCeEEEEECCCCEEEEECCCCc-EEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch
Confidence 3678888886 68899999999999999997744 44556678889999999 87 6666688888888865
No 79
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.7e-33 Score=335.31 Aligned_cols=290 Identities=20% Similarity=0.308 Sum_probs=255.7
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|.+.|++++|++++++|++++.||.|+|||+.+++.+..+..|...|++++|++++++|++++.||.|++||+++
T Consensus 49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 128 (814)
T 3mkq_A 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128 (814)
T ss_dssp EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG
T ss_pred EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-ceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-CceEEEEEcC--CCCEEEEEeCCC
Q 005123 218 N-NVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVKSVDWHP--TKSLLVSGGKDS 292 (713)
Q Consensus 218 ~-~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-~~V~sl~~sp--dg~~L~sgs~Dg 292 (713)
+ .....+..|...|.+++|++ +++.|++++.|++|++||+.+.+....+..+. ..|.+++|++ ++.+|++++.|+
T Consensus 129 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 208 (814)
T 3mkq_A 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208 (814)
T ss_dssp TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS
T ss_pred CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC
Confidence 7 66777788999999999999 88999999999999999998887777766554 8899999999 999999999999
Q ss_pred cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
.|++||+++++.+..+..|...|++++|++++++|++++.||.|++||+.+++.+..+..|...|.+++|++++..++++
T Consensus 209 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEE
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999954454445
Q ss_pred EECCCcEEEEEcCCCCceEEE------------------------------------------ecccCCCeEEEEEcCCC
Q 005123 373 GSLDGSIFHWLVGHETPQVEI------------------------------------------HNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~------------------------------------------~~~h~~~V~~l~~spdg 410 (713)
++.|+.+.+|++........+ ...+...+.+++|++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 368 (814)
T 3mkq_A 289 SGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG 368 (814)
T ss_dssp EEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS
T ss_pred EEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCC
Confidence 555777889987654322211 12234568899999999
Q ss_pred cEEEE-eCCcEEEEecCC
Q 005123 411 YLLCS-NDHTTKFWCRNR 427 (713)
Q Consensus 411 ~~laS-~Dg~v~iWd~~~ 427 (713)
.+++. .|+.+.||++..
T Consensus 369 ~~la~~~~~~~~i~~~~~ 386 (814)
T 3mkq_A 369 RFVTVVGDGEYVIYTALA 386 (814)
T ss_dssp SEEEEEETTEEEEEETTT
T ss_pred CEEEEecCCEEEEEECcc
Confidence 87765 899999999754
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-33 Score=308.59 Aligned_cols=261 Identities=20% Similarity=0.348 Sum_probs=221.2
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-CCce
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~-~~~~ 220 (713)
.|...|++++|++++++|++|+.||.|+|||+.+++.+..+..|...|.+++| ++++|++++.||.|++||++ ....
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 48899999999999999999999999999999999999999999999999999 56899999999999999999 4566
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-EEEEEe--CCCcEEEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGG--KDSLVKLW 297 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs--~Dg~I~Iw 297 (713)
...+..|...|.+++|++++++|++++.|+.|++||+++.+.+..+..|...|.+++|++++. ++++++ .|+.|++|
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 777889999999999999999999999999999999999999999999999999999999764 566654 79999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeeE--EEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKEL--ESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs--~Dg~I~IwDl~t~~~l--~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
|+++++.+..+. +...|.+++|++++++|++++ .|+.|+|||+++++.. ..+.+|...|.+++|++ ++.+|+++
T Consensus 290 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~ 367 (401)
T 4aez_A 290 NAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTA 367 (401)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEE
T ss_pred ECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEE
Confidence 999999988886 667899999999999999954 8999999999986554 44678999999999999 89999999
Q ss_pred ECCCcEEEEEcCCCCceEEEecccCCCeEEEEE
Q 005123 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~ 406 (713)
+.||.|++||+.++.........+.....++.|
T Consensus 368 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~i~~ 400 (401)
T 4aez_A 368 ASDENLKFWRVYDGDHVKRPIPITKTPSSSITI 400 (401)
T ss_dssp CTTSEEEEEECCC--------------------
T ss_pred eCCCcEEEEECCCCccccccccccCCCccceec
Confidence 999999999998877655554444444444443
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=340.82 Aligned_cols=283 Identities=12% Similarity=0.138 Sum_probs=229.8
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~ 221 (713)
.|...|++|+|++ +++|++++.|++|+|||+.+++.+..+. |...|++++|++++++|++|+.||.|++||+++++..
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 4788999999999 8899999999999999999999888886 7789999999999999999999999999999988753
Q ss_pred -----------eeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEEccC------------------CC
Q 005123 222 -----------ANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGH------------------GW 271 (713)
Q Consensus 222 -----------~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h------------------~~ 271 (713)
..+..|...|++++|+++ +..|++++.|++| +||+++++.+..+..| ..
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 234568899999999996 4789999999999 9999999988888755 46
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE--Ec---c-------------CCCCeEEEE--------------
Q 005123 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FH---G-------------HKNMVLCVK-------------- 319 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~--~~---~-------------h~~~I~si~-------------- 319 (713)
.|++++|++++++|++++.|++|+|||+++++.+.. +. . +...|++++
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 799999999999999999999999999977654321 00 0 011111111
Q ss_pred --------------------------------------------------------------------------------
Q 005123 320 -------------------------------------------------------------------------------- 319 (713)
Q Consensus 320 -------------------------------------------------------------------------------- 319 (713)
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence
Q ss_pred ----------------------------------------------------------------------EcCCCCEEEE
Q 005123 320 ----------------------------------------------------------------------WNQNGNWVLT 329 (713)
Q Consensus 320 ----------------------------------------------------------------------fspdg~~Lat 329 (713)
|++++++|++
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence 2345667778
Q ss_pred EECCCeEEEEECCCCeeE----EE--ee-----cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC----------
Q 005123 330 ASKDQIIKLYDIRAMKEL----ES--FR-----GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---------- 388 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~~l----~~--~~-----~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~---------- 388 (713)
|+.|++|++||+.+++.. .. +. +|...|++|+|+| ++++||+|+.||+|+|||+.+.+
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~ 531 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPES 531 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCC
Confidence 888888888887765321 11 11 6888999999999 89999999999999999997552
Q ss_pred ----------------------------------ceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 389 ----------------------------------PQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 389 ----------------------------------~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
..+..+.+|.+.|++|+|++|| +||+ .|++|+|||++...
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~ 607 (902)
T 2oaj_A 532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA 607 (902)
T ss_dssp ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTE
T ss_pred cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe
Confidence 1245666799999999999999 7764 89999999985543
No 82
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=301.24 Aligned_cols=282 Identities=17% Similarity=0.197 Sum_probs=238.0
Q ss_pred EeeCCCCCceEEEEEccC---CCEEEEEECCCcEEEEeCCC-CceE-EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 138 TSLNKNRCSINRVLWTPT---GRRLITGSQSGEFTLWNGQS-FNFE-MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spd---g~~Latgs~dg~V~Iwd~~t-~~~~-~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
..+.+|.+.|+|++|+++ +++|++|+.||.|+|||+.+ +..+ ..+..|...|++++|++++++|++++.||.|++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 357899999999999999 59999999999999999987 4444 788899999999999999999999999999999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEE--ecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSF--CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~f--s~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
||+++++.+. +..|...|++++| ++++++|++++.|+.|++||+++++.+..+..+. .+.++.+. ...+++++.
T Consensus 113 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~ 188 (368)
T 3mmy_A 113 WDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATA 188 (368)
T ss_dssp EETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEG
T ss_pred EEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeC
Confidence 9999988766 4579999999999 8899999999999999999999998888887554 67777776 458899999
Q ss_pred CCcEEEEECCCCceEEEEc--cCCCCeEEEEEcCCCCE----EEEEECCCeEEEEECCCC---eeEEEeecCCC------
Q 005123 291 DSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNW----VLTASKDQIIKLYDIRAM---KELESFRGHRK------ 355 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~--~h~~~I~si~fspdg~~----Latgs~Dg~I~IwDl~t~---~~l~~~~~h~~------ 355 (713)
|+.+++||++......... .+...+.++++..+... |++++.|+.|+|||++.. +.+..+..|..
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence 9999999998765443332 23455666766665544 999999999999999987 55777787776
Q ss_pred ------CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 356 ------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 356 ------~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
.|++++|++ ++++|++++.||.|+|||+++.. .+..+..|...|++++|++++.+|++ .|+..+.|++
T Consensus 269 ~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 269 APQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDART-KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTE-EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCc-EEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 799999999 78899999999999999998765 45566689999999999999976654 6665555554
No 83
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1e-32 Score=292.29 Aligned_cols=249 Identities=25% Similarity=0.434 Sum_probs=223.0
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
...+.+|...|++++|++++++|++++.|+.|++|+............+...+..+.+++++++|++++.|+.+++||+.
T Consensus 79 ~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~ 158 (340)
T 4aow_A 79 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred eEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCce-eeeeccCCCCeeEEEEecCC--CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 217 MNNV-KANKSAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 217 ~~~~-~~~~~~~~~~V~~l~fs~dg--~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
.... ......|...|..++|+.++ .++++++.|++|++||+++++.+..+.+|...|++|+|++++++|++++.|+.
T Consensus 159 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~ 238 (340)
T 4aow_A 159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238 (340)
T ss_dssp SCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred CCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 6644 44456788999999998765 56889999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee---------cCCCCeEEEEEeC
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---------GHRKDVTALAWHP 364 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~---------~h~~~V~sl~fsp 364 (713)
|+|||+++.+.+..+.. ...|.+++|++++. +++++.|+.|+|||+++...+..+. .|...|++++|++
T Consensus 239 i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 316 (340)
T 4aow_A 239 AMLWDLNEGKHLYTLDG-GDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316 (340)
T ss_dssp EEEEETTTTEEEEEEEC-SSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred EEEEEeccCceeeeecC-CceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence 99999999999888874 56799999999876 4556679999999999887766553 5788999999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCC
Q 005123 365 FHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 365 ~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
++++|++|+.||.|+|||++++.
T Consensus 317 -dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 317 -DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -TSSEEEEEETTSCEEEEEEEC--
T ss_pred -CCCEEEEEeCCCEEEEEeCCCcC
Confidence 78999999999999999998764
No 84
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-33 Score=295.48 Aligned_cols=247 Identities=13% Similarity=0.187 Sum_probs=227.3
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC-----CcEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-----GAIKYW 213 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-----G~I~vw 213 (713)
.+.+|.+.|++++|++++++|++++.||.|+|||+.+++.+..+. +...|.+++|++++++|++++.+ +.|++|
T Consensus 69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 466899999999999999999999999999999999999988888 88999999999999999999999 999999
Q ss_pred EcCCCc-----------eeeeeccCCC--CeeEEEEecCCCEEEEEECCCeEEEEEcCC-CeeEEEEccCCCceEEEEEc
Q 005123 214 QNNMNN-----------VKANKSAHKE--SVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWH 279 (713)
Q Consensus 214 dl~~~~-----------~~~~~~~~~~--~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-~~~~~~l~~h~~~V~sl~~s 279 (713)
|+.... ....+..+.. .+.+++|++++++|++++.|+.|++||+++ .+.+..+..|...|.+++|+
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 227 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS 227 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC
Confidence 987653 2223344444 899999999999999999999999999998 78888899999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC--------------eEEEEECCCCe
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ--------------IIKLYDIRAMK 345 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg--------------~I~IwDl~t~~ 345 (713)
+++++|++++.|+.|++||+++++.+..+. +...+.+++|++++++|++++.++ .|++||+.+++
T Consensus 228 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 228 PDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred CCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 999999999999999999999999988887 778899999999999999999988 89999999999
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 346 ~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.+..+..|...|++++|++ ++++|++++.||.|+||+++...
T Consensus 307 ~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 307 EIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEECHHH
T ss_pred chhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECcccc
Confidence 9999999999999999999 78999999999999999997543
No 85
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1e-34 Score=308.28 Aligned_cols=249 Identities=20% Similarity=0.362 Sum_probs=208.8
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEE
Q 005123 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWD 256 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~--~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwD 256 (713)
.+.+|.+.|++++|++++++|++|+.|++|+|||++++. .+..+.+|...|.+++|++ ++++|++++.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999999999999999999999998774 4567789999999999985 489999999999999999
Q ss_pred cCCC--eeEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCce---EEEEccCCCCeEEEEEcCC------
Q 005123 257 FARC--QEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKNMVLCVKWNQN------ 323 (713)
Q Consensus 257 l~~~--~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I~IwDl~t~~~---~~~~~~h~~~I~si~fspd------ 323 (713)
++++ +.+..+.+|...|++++|+++ +.+|++++.|++|++||+++... ...+..|...|.+++|+++
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9876 356677889999999999997 78999999999999999987642 3445678889999999997
Q ss_pred -----------CCEEEEEECCCeEEEEECCCC---eeEEEeecCCCCeEEEEEeCCC---CCEEEEEECCCcEEEEEcCC
Q 005123 324 -----------GNWVLTASKDQIIKLYDIRAM---KELESFRGHRKDVTALAWHPFH---EEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 324 -----------g~~Latgs~Dg~I~IwDl~t~---~~l~~~~~h~~~V~sl~fsp~~---~~~lasgs~DG~I~Iwd~~~ 386 (713)
+++|++++.|++|+|||+++. +.+..+.+|...|.+++|++++ +.+|++++.|++|+|||+++
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 478999999999999999754 5677889999999999999943 37999999999999999976
Q ss_pred C---CceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 387 E---TPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 387 ~---~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
. ......+..|...|++++|++++.+|++ .|++|+||+.+..+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g 295 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTS
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCC
Confidence 2 1122344568899999999999977654 89999999986543
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.7e-34 Score=305.92 Aligned_cols=241 Identities=15% Similarity=0.267 Sum_probs=219.0
Q ss_pred CCCCceEEEEEccC----CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcC
Q 005123 142 KNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 142 ~H~~~V~~v~~spd----g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~ 216 (713)
.|...|++++|+++ +++|++|+.||.|+|||+.+++.+..+..|...|++++|++ ++++|++++.||.|++||++
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 48889999999999 67999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CCceeeee---ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc--------------------------
Q 005123 217 MNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-------------------------- 267 (713)
Q Consensus 217 ~~~~~~~~---~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-------------------------- 267 (713)
+++.+..+ ..|...|.+++|++++++|++++.|+.|++||+++++.+..+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 99888887 6899999999999999999999999999999998765443332
Q ss_pred --cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--------------EEEEccCCCCeEEEEEcCC--CCEEEE
Q 005123 268 --GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--------------LCSFHGHKNMVLCVKWNQN--GNWVLT 329 (713)
Q Consensus 268 --~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~--------------~~~~~~h~~~I~si~fspd--g~~Lat 329 (713)
.|...|.+++|+ +++|++++.|+.|++||+++++. +..+..|...|++++|+++ +++|++
T Consensus 227 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 227 RDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp CSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred ccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence 388999999999 78999999999999999988654 7778889999999999999 999999
Q ss_pred EECCCeEEEEECCCCe----eEEEeecC--CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 330 ASKDQIIKLYDIRAMK----ELESFRGH--RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~----~l~~~~~h--~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
++.|+.|+|||+++++ .+..+..| ...|++++|++ ++++|++++.||.|+|||+.
T Consensus 305 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence 9999999999999875 34477777 78999999999 89999999999999999985
No 87
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-33 Score=310.72 Aligned_cols=283 Identities=15% Similarity=0.148 Sum_probs=238.1
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCc---eEEEEec-------------------------------------
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN---FEMILQA------------------------------------- 184 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~---~~~~l~~------------------------------------- 184 (713)
.+|.|++|++||++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999966655 57899999999888 5555543
Q ss_pred -----------------cCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcC--CCceeeeec--cCCCCeeEEEEecCCCE
Q 005123 185 -----------------HDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNN--MNNVKANKS--AHKESVRDLSFCRTDLK 242 (713)
Q Consensus 185 -----------------h~~~V~sl~~spdg~~L-~sgs~DG~I~vwdl~--~~~~~~~~~--~~~~~V~~l~fs~dg~~ 242 (713)
|.+.|++++|++++++| ++++.||.|+|||+. +++.+..+. .+...|++++|++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 23369999999999996 889999999999999 777777765 56789999999999999
Q ss_pred EEEEECCCeEEEEEcCCCeeEE----EEccCCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCceEEE-EccCCCC
Q 005123 243 FCSCSDDTTVKVWDFARCQEER----SLTGHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNM 314 (713)
Q Consensus 243 Las~s~Dg~I~iwDl~~~~~~~----~l~~h~~~V~sl~~spd---g~~L~sgs~Dg~I~IwDl~t~~~~~~-~~~h~~~ 314 (713)
|++++.|+.|++||+.+.+... .+.+|...|.+++|+++ +++|++++.|+.|+|||+++++.+.. +.+|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998776544 66789999999999999 99999999999999999999988877 5589999
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec-------------------------CCCCeEEEEEeCCCCCE
Q 005123 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-------------------------HRKDVTALAWHPFHEEY 369 (713)
Q Consensus 315 I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-------------------------h~~~V~sl~fsp~~~~~ 369 (713)
|++++|+ ++++|++++.|+.|+|||+++++.+..+.. ....|.+++|++ ++.+
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~ 321 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPF 321 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSE
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCE
Confidence 9999999 999999999999999999999998887763 245799999999 7888
Q ss_pred EEEEE-CCCcEEEEEc--CCCC--ceEEEecccCCCeEEEEEcCCCcEEEEe--------CCcEEEEecCCCCCc
Q 005123 370 FVSGS-LDGSIFHWLV--GHET--PQVEIHNVHDNTVWDLAWHPIGYLLCSN--------DHTTKFWCRNRPGDT 431 (713)
Q Consensus 370 lasgs-~DG~I~Iwd~--~~~~--~~~~~~~~h~~~V~~l~~spdg~~laS~--------Dg~v~iWd~~~~~~~ 431 (713)
|++++ .|+.|+||++ .... ..+..+..| ..|++++|++++.+++.. ++.|+||.++.....
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~ 395 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENS 395 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTE
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCe
Confidence 88888 8999999999 4332 334445556 889999999977666541 556899998765443
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.4e-33 Score=299.88 Aligned_cols=250 Identities=17% Similarity=0.208 Sum_probs=220.9
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE--eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l--~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
..+.+|...|++++|++++++|++++.|+.|+|||+.+++....+ ..|...|.+++|++++++|++++.|+.|++||+
T Consensus 46 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~ 125 (372)
T 1k8k_C 46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 125 (372)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred eeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEe
Confidence 356689999999999999999999999999999999888755444 668999999999999999999999999999999
Q ss_pred CCCc----eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC------------------CCeeEEEEccCCCce
Q 005123 216 NMNN----VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA------------------RCQEERSLTGHGWDV 273 (713)
Q Consensus 216 ~~~~----~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~------------------~~~~~~~l~~h~~~V 273 (713)
+..+ .......|...|.+++|++++++|++++.|+.|++||++ .++.+..+..|...|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (372)
T 1k8k_C 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 205 (372)
T ss_dssp ETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred cCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence 8876 233336688999999999999999999999999999953 567888888899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--Cee--E--
Q 005123 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA--MKE--L-- 347 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t--~~~--l-- 347 (713)
.+++|++++++|++++.|+.|++||+++++.+..+..|...|.+++|++++++|+++ .|+.|++||+++ ++. +
T Consensus 206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~ 284 (372)
T 1k8k_C 206 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGR 284 (372)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeec
Confidence 999999999999999999999999999999999999999999999999999988877 999999999987 421 0
Q ss_pred ----------------------------------EEe-ecCCCCeEEEEEeCCCC---CEEEEEECCCcEEEEEcCCCC
Q 005123 348 ----------------------------------ESF-RGHRKDVTALAWHPFHE---EYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 348 ----------------------------------~~~-~~h~~~V~sl~fsp~~~---~~lasgs~DG~I~Iwd~~~~~ 388 (713)
..+ .+|...|++++|++.++ .+|++++.||.|+|||+++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 285 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 223 48999999999886466 999999999999999996544
No 89
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.9e-32 Score=302.20 Aligned_cols=247 Identities=23% Similarity=0.413 Sum_probs=221.4
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+.+|...|+||+|++||++||+|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++++.|+.+++||....
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeeccc
Confidence 45678999999999999999999999999999999999999999999999999988 4789999999999999998865
Q ss_pred -ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe----eEEEEccCCCceEEEEEcCCC-CEEEEE--eC
Q 005123 219 -NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTK-SLLVSG--GK 290 (713)
Q Consensus 219 -~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~----~~~~l~~h~~~V~sl~~spdg-~~L~sg--s~ 290 (713)
..+..+..|...+..+.|++++++|++++.|+.|++||+.+++ .+.....|...|.+++|++++ .+++++ +.
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 4566778999999999999999999999999999999997754 345677889999999999965 455553 57
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCC
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs--~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~ 368 (713)
|++|+|||+++++.+..+.. ...+.++.|+++++.|++++ .|+.|+|||+.+++.+.++.+|.+.|++|+|++ ++.
T Consensus 300 D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~ 377 (420)
T 4gga_A 300 DRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGA 377 (420)
T ss_dssp TCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSS
T ss_pred CCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCC
Confidence 99999999999999888874 45799999999999998776 789999999999999999999999999999999 789
Q ss_pred EEEEEECCCcEEEEEcCCCCc
Q 005123 369 YFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~ 389 (713)
+|++|+.|++|+|||+.+...
T Consensus 378 ~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 378 TVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CEEEEETTTEEEEECCSCSSC
T ss_pred EEEEEecCCeEEEEECCCCCc
Confidence 999999999999999966543
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=298.94 Aligned_cols=245 Identities=18% Similarity=0.285 Sum_probs=213.6
Q ss_pred CCCCceEEEEEccC---CCEEEEEECCCcEEEEeCCCCc-eEEEEeccCCCEEEEEE------ccCCCEEEEEeCCCcEE
Q 005123 142 KNRCSINRVLWTPT---GRRLITGSQSGEFTLWNGQSFN-FEMILQAHDHAIRSMVW------SHNDNWMVSGDDGGAIK 211 (713)
Q Consensus 142 ~H~~~V~~v~~spd---g~~Latgs~dg~V~Iwd~~t~~-~~~~l~~h~~~V~sl~~------spdg~~L~sgs~DG~I~ 211 (713)
+|...|++++|+++ +++|++++.||.|++||+.+.+ .+..+..|...|.+++| ++++++|++++.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 68899999999999 6999999999999999999988 88899999999999965 67899999999999999
Q ss_pred EEEcCCCc-eeeeeccCCC----CeeEEE----EecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC--
Q 005123 212 YWQNNMNN-VKANKSAHKE----SVRDLS----FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-- 280 (713)
Q Consensus 212 vwdl~~~~-~~~~~~~~~~----~V~~l~----fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-- 280 (713)
+||+++++ .+..+..+.. .|.+++ |++++++|++++.|+.|++||+++.+.... ..|...|.+++|++
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCC
Confidence 99999876 5666655444 788888 678999999999999999999999887544 55888999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCceEEEEc-----cCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC---------
Q 005123 281 -TKSLLVSGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAM--------- 344 (713)
Q Consensus 281 -dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-----~h~~~I~si~fspdg~-~Latgs~Dg~I~IwDl~t~--------- 344 (713)
++++|++++.|+.|++||+++++.+..+. .|...|++++|+++++ +|++++.|+.|+|||+++.
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 89999999999999999998876655444 8999999999999998 8999999999999999753
Q ss_pred ----------eeEEEeecCCCCeEEEEEeCCCCCEEE-EEECCCcEEEEEcCCCC
Q 005123 345 ----------KELESFRGHRKDVTALAWHPFHEEYFV-SGSLDGSIFHWLVGHET 388 (713)
Q Consensus 345 ----------~~l~~~~~h~~~V~sl~fsp~~~~~la-sgs~DG~I~Iwd~~~~~ 388 (713)
+.+..+..|...|++++|++ ++.+|+ +++.||.|+|||+.+..
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred CCccccccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 46778889999999999999 566665 89999999999997643
No 91
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-33 Score=300.92 Aligned_cols=253 Identities=21% Similarity=0.372 Sum_probs=219.3
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeeeeccCCCCeeEEEEecC--CCEEEEEECCCeE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN--MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTV 252 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~--~~~~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I 252 (713)
+.+..+.+|...|++++|++++++|++++.||.|+|||+. +.+.+..+..|...|++++|+++ +++|++++.|+.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4566788999999999999999999999999999999998 55677778899999999999976 8999999999999
Q ss_pred EEEEcCCCe--eEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eEEEEccCCCCeEEEEEcC----
Q 005123 253 KVWDFARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQ---- 322 (713)
Q Consensus 253 ~iwDl~~~~--~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h~~~I~si~fsp---- 322 (713)
++||+++++ .+..+..|...|.+++|+++ +++|++++.|+.|++||+++.. ....+..|...|++++|++
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999887 67778889999999999999 9999999999999999999873 4456678999999999999
Q ss_pred ---------CCCEEEEEECCCeEEEEECCCCe----eEEEeecCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCC
Q 005123 323 ---------NGNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 323 ---------dg~~Latgs~Dg~I~IwDl~t~~----~l~~~~~h~~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~ 387 (713)
++++|++++.|+.|+|||+++.+ .+..+..|...|++++|++++ +.+|++++.||.|+|||+++.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 69999999999999999998754 456778899999999999933 899999999999999999876
Q ss_pred Cce--EEEe--cccCCCeEEEEEcCCCcEEE--EeCCcEEEEecCCCC
Q 005123 388 TPQ--VEIH--NVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNRPG 429 (713)
Q Consensus 388 ~~~--~~~~--~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~~~~~ 429 (713)
... .... ..|...|++++|++++.+++ +.|+.|+||+++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 422 2222 23788999999999997665 399999999997543
No 92
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-32 Score=290.74 Aligned_cols=250 Identities=20% Similarity=0.384 Sum_probs=218.2
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC----ceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEE
Q 005123 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVK 253 (713)
Q Consensus 180 ~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~----~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~ 253 (713)
..+.+|.+.|++++|++++++|++++.||.|+|||+.++ +....+..|...|++++|++ ++++|++++.|++|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456789999999999999999999999999999999876 45666788999999999998 699999999999999
Q ss_pred EEEcCCC---------eeEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceEEEEc-------------
Q 005123 254 VWDFARC---------QEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGRELCSFH------------- 309 (713)
Q Consensus 254 iwDl~~~---------~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I~IwDl~t~~~~~~~~------------- 309 (713)
+||++++ +.+..+..|...|.+++|+++ +++|++++.|+.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999876 567788889999999999999 9999999999999999999877544332
Q ss_pred cCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCee--EEEeecCCCCeEEEEEeCCCC----CEEEEEECCCcEE
Q 005123 310 GHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHE----EYFVSGSLDGSIF 380 (713)
Q Consensus 310 ~h~~~I~si~fspd---g~~Latgs~Dg~I~IwDl~t~~~--l~~~~~h~~~V~sl~fsp~~~----~~lasgs~DG~I~ 380 (713)
.+...+.+++|+++ +++|++++.|+.+.+|+...++. +..+.+|...|++++|++ ++ ++|++++.||.|+
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCCcceEEEEEcCCCeEE
Confidence 57788999999997 99999999999998888887765 777888999999999999 55 7999999999999
Q ss_pred EEEcCCCC---------------------------------------------ceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 381 HWLVGHET---------------------------------------------PQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 381 Iwd~~~~~---------------------------------------------~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
+||++... ..+..+.+|...|++++|++++.+|++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence 99997642 344456679999999999999976654
Q ss_pred --eCCcEEEEecCCCCC
Q 005123 416 --NDHTTKFWCRNRPGD 430 (713)
Q Consensus 416 --~Dg~v~iWd~~~~~~ 430 (713)
.|+.|+||+++....
T Consensus 324 ~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EETTSCEEEEEECTTSC
T ss_pred ecCCCcEEEEecCcCcc
Confidence 899999999976543
No 93
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-32 Score=283.61 Aligned_cols=242 Identities=19% Similarity=0.291 Sum_probs=218.8
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC---ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~---~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
.+..|...|++++|++++++|++++.|+.|++|++.+. +.+..+..|...|.+++| ++++|++++.||.|++||
T Consensus 54 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d- 130 (313)
T 3odt_A 54 VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK- 130 (313)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-
T ss_pred EeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-
Confidence 45578999999999999999999999999999997654 567788899999999999 678999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEcc-CCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 216 NMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
.++....+..|...|.+++|++ ++++|++++.|+.|++|| ..+....+.. |...|.+++|++++. |++++.|+.
T Consensus 131 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~ 206 (313)
T 3odt_A 131 -EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL 206 (313)
T ss_dssp -TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE
T ss_pred -CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe
Confidence 6677777888999999999998 899999999999999999 4456667766 889999999999988 999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
|++||+++++.+..+..|...|++++|++++ .|++++.|+.|++||+++++.+..+..|...|++++|++ ++. ++++
T Consensus 207 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~ 283 (313)
T 3odt_A 207 IKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVG 283 (313)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEE
T ss_pred EEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEE
Confidence 9999999999999999999999999999999 589999999999999999999999999999999999999 556 6679
Q ss_pred ECCCcEEEEEcCCCCce
Q 005123 374 SLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~ 390 (713)
+.||.|++||+++....
T Consensus 284 ~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 284 SSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp ETTSCEEEEESCGGGCC
T ss_pred eCCCcEEEEeCCCCcee
Confidence 99999999999776543
No 94
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-32 Score=298.88 Aligned_cols=240 Identities=15% Similarity=0.171 Sum_probs=206.5
Q ss_pred eCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEecc---CCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAH---DHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h---~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+.+|...|++++|++ ++++|++++.|+.|+|||+.+ +.+..+..+ ...|.+++|++++++|++++.|+.|++||+
T Consensus 114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 192 (383)
T 3ei3_B 114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL 192 (383)
T ss_dssp CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC
Confidence 357999999999999 789999999999999999986 455555544 478999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCC----CeeEEEEccCCCceEEEEEcC-CCCEEEEEe
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFAR----CQEERSLTGHGWDVKSVDWHP-TKSLLVSGG 289 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~----~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs 289 (713)
+++.+..+..|...|.+++|+++++ +|++++.|++|++||+++ ...+..+ .|...|.+++|++ ++++|++++
T Consensus 193 -~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 193 -DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp -TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred -CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence 5667778889999999999999998 999999999999999987 5566666 6899999999999 999999999
Q ss_pred CCCcEEEEECCCCceEEEEccCC-----------------CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec
Q 005123 290 KDSLVKLWDAKSGRELCSFHGHK-----------------NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 352 (713)
Q Consensus 290 ~Dg~I~IwDl~t~~~~~~~~~h~-----------------~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~ 352 (713)
.|+.|+|||+++++.+..+..|. ..+..++|++++++ +++.|+.|+|||+++++.+..+..
T Consensus 271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~ 348 (383)
T 3ei3_B 271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD 348 (383)
T ss_dssp SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB
T ss_pred CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC
Confidence 99999999999988776665442 23344556666655 667899999999999999999987
Q ss_pred --CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 353 --HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 353 --h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
|...+..++|++ ++.+|++++ |+.|+|||+++
T Consensus 349 ~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 349 PNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred CCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 457788889999 789999997 99999999864
No 95
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-33 Score=335.83 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=199.1
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
...+|.+.|+|++|++++++||+|+.||.|+|||..+.+....+ .|...|++|+|++ +++|++++.|++|+|||++++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 34589999999999999999999999999999999887665544 4788999999999 889999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE-----------EEEccCCCceEEEEEcCC-CCEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-----------RSLTGHGWDVKSVDWHPT-KSLLV 286 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~-----------~~l~~h~~~V~sl~~spd-g~~L~ 286 (713)
+.+..+. +...|++++|++++++|++++.||+|++||+++++.. ..+.+|...|.+|+|+|+ +..|+
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 8887775 6689999999999999999999999999999987753 223568889999999996 57899
Q ss_pred EEeCCCcEEEEECCCCceEEEEccC------------------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE
Q 005123 287 SGGKDSLVKLWDAKSGRELCSFHGH------------------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~~~~~h------------------~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~ 348 (713)
+++.|+.| |||+++++.+..+..| ...|++++|+++|++|++++.|++|+|||+++++.+.
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 99999999 9999999988888755 4679999999999999999999999999999988765
Q ss_pred E--e---ec-------------CCCCeEEEEEeC----CCCCEEEEEECC
Q 005123 349 S--F---RG-------------HRKDVTALAWHP----FHEEYFVSGSLD 376 (713)
Q Consensus 349 ~--~---~~-------------h~~~V~sl~fsp----~~~~~lasgs~D 376 (713)
. + .. |...|++++|++ ++..+|++++.|
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 3 2 11 244699999954 222456666544
No 96
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-33 Score=301.88 Aligned_cols=247 Identities=11% Similarity=0.172 Sum_probs=209.7
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC
Q 005123 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN--NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~--~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~ 258 (713)
.+..+...|++++|++++++|++++.|+.|+|||+.++ +.+..+..|...|.+++|++++++|++++.|++|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34556789999999999999999999999999999988 7778888999999999999999999999999999999998
Q ss_pred CCe---eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEcc-CCCCeEEEEEcCCCCEEEEEE
Q 005123 259 RCQ---EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHG-HKNMVLCVKWNQNGNWVLTAS 331 (713)
Q Consensus 259 ~~~---~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~---~~~~~~~-h~~~I~si~fspdg~~Latgs 331 (713)
+++ ....+..|...|.+++|++++++|++++.|+.|++||+++++ .+..+.. |...|++++|++++++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 876 567778899999999999999999999999999999999877 4677777 999999999999999999999
Q ss_pred CCCeEEEEECC------------------CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce---
Q 005123 332 KDQIIKLYDIR------------------AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ--- 390 (713)
Q Consensus 332 ~Dg~I~IwDl~------------------t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~--- 390 (713)
.|+.|++||++ .++.+..+ .|...|++++|++ ++++|++++.||.|+|||+++....
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 99999999985 35566777 8999999999999 7899999999999999999887652
Q ss_pred EEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCC
Q 005123 391 VEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~ 429 (713)
+..+..|...|++++|++++.++++ .|+.+.+|+....+
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 283 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESG 283 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC--
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCc
Confidence 3455678999999999999988876 67777788876544
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.6e-32 Score=300.38 Aligned_cols=255 Identities=24% Similarity=0.415 Sum_probs=217.1
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|.+.|++++| ++++|++|+.||.|+|||+.+++.+..+..|...|.+++|+ +++|++++.||.|++||+++
T Consensus 167 ~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~ 242 (435)
T 1p22_A 167 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMAS 242 (435)
T ss_dssp EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSS
T ss_pred EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCC
Confidence 456789999999999 78999999999999999999999999999999999999996 56999999999999999998
Q ss_pred Ccee---eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 218 NNVK---ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 218 ~~~~---~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
+... ..+..|...|.+++| ++++|++++.|++|++||+++++.+..+..|...|.+++|+ +++|++++.|+.|
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i 318 (435)
T 1p22_A 243 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI 318 (435)
T ss_dssp SSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred CCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeE
Confidence 7654 567789999999999 78899999999999999999999999999999999999995 7899999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------eEEEeecCCCCeEEEEEeCC
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------ELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~---------~l~~~~~h~~~V~sl~fsp~ 365 (713)
++||+++++.+..+.+|...|.+++| ++++|++|+.||.|+|||+++++ .+..+..|...|++++|
T Consensus 319 ~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--- 393 (435)
T 1p22_A 319 RLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--- 393 (435)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---
T ss_pred EEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---
Confidence 99999999999999999999999999 78999999999999999998766 78889999999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEc
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (713)
++.+|++++.||.|+|||+.+........ ....+.++.|.
T Consensus 394 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~ 433 (435)
T 1p22_A 394 DEFQIVSSSHDDTILIWDFLNDPAAQAEP--PRSPSRTYTYI 433 (435)
T ss_dssp CSSCEEECCSSSEEEEEC------------------------
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcccCC--CCCCccceeee
Confidence 46789999999999999997765433322 22344444443
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=290.87 Aligned_cols=283 Identities=17% Similarity=0.272 Sum_probs=211.0
Q ss_pred CCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC---CEEEEEeCCCcEEEEEcC
Q 005123 141 NKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND---NWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 141 ~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg---~~L~sgs~DG~I~vwdl~ 216 (713)
.+|...|++++|++ ++++|++++.||.|++||+.+++....+. +...+.+++|++.+ .+|++++.|+.|++||++
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 56999999999999 77899999999999999999998887776 78889999999854 599999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCe-eEEEE---------------ccCCCceEEEEEc
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQ-EERSL---------------TGHGWDVKSVDWH 279 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~-~~~~l---------------~~h~~~V~sl~~s 279 (713)
+++.+..+..|...|++++|++++. .|++++.|+.|++||+++.. .+..+ ..|...|.+++|+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 9999889999999999999999998 58999999999999998765 33333 4688899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEccC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h-----~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
+++++|++++.|+.|++||+++++....+..+ ...+........+..+++++.|+.|++||+.+++.+..+.+|.
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 99999999999999999999998765544322 1122222223345667777889999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-EeCCcEEEEecCC
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCRNR 427 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~~~ 427 (713)
..|++++|++ ++.+|++++.||.|++||+++......... +. ....+....+..+.. ..|+.+++|+...
T Consensus 335 ~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 335 KTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDE-TT-TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp SCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred CeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCc-eE-eccccccccceeecccCccCceeecCCcc
Confidence 9999999999 789999999999999999987764433221 11 111222222223333 3899999998643
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.8e-32 Score=298.63 Aligned_cols=248 Identities=22% Similarity=0.419 Sum_probs=217.4
Q ss_pred EEEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCC----------CceeeeeccCCCCeeEEEEecCCC-EEEEEE
Q 005123 180 MILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNM----------NNVKANKSAHKESVRDLSFCRTDL-KFCSCS 247 (713)
Q Consensus 180 ~~l~~h~~~V~sl~~spd-g~~L~sgs~DG~I~vwdl~~----------~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s 247 (713)
.....|.+.|++++|+++ +++|++++.||.|+|||+.. ......+..|...|.+++|++++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 455679999999999997 67999999999999999986 566677789999999999999988 999999
Q ss_pred CCCeEEEEEcCCCee-------EEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---ceEEEEccCCCCeE
Q 005123 248 DDTTVKVWDFARCQE-------ERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVL 316 (713)
Q Consensus 248 ~Dg~I~iwDl~~~~~-------~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~---~~~~~~~~h~~~I~ 316 (713)
.||+|++||+.+... ...+..|...|.+++|++ ++.+|++++.|+.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987322 456678999999999999 7789999999999999999987 56777888999999
Q ss_pred EEEEcCCCC-EEEEEECCCeEEEEECCC-CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC------
Q 005123 317 CVKWNQNGN-WVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET------ 388 (713)
Q Consensus 317 si~fspdg~-~Latgs~Dg~I~IwDl~t-~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~------ 388 (713)
+++|++++. +|++|+.|+.|+|||+++ ...+..+..|...|++++|++++..+|++++.|+.|+|||+....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 688999999999999998 567888999999999999999666789999999999999997632
Q ss_pred -------ceEEEecccCCCeEEEEEcCCCc-EEEE--eCCcEEEEecCC
Q 005123 389 -------PQVEIHNVHDNTVWDLAWHPIGY-LLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 389 -------~~~~~~~~h~~~V~~l~~spdg~-~laS--~Dg~v~iWd~~~ 427 (713)
..+....+|...|++++|++++. ++++ .|+.|+||+++.
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 45666778899999999999996 6654 899999999853
No 100
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=312.84 Aligned_cols=248 Identities=10% Similarity=0.105 Sum_probs=208.4
Q ss_pred eeCCCCCceEEEEEccC------CCEEEEEECCCcEEEEeCCCCce-----------EEEEeccCCCEEEEEEccCCCEE
Q 005123 139 SLNKNRCSINRVLWTPT------GRRLITGSQSGEFTLWNGQSFNF-----------EMILQAHDHAIRSMVWSHNDNWM 201 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spd------g~~Latgs~dg~V~Iwd~~t~~~-----------~~~l~~h~~~V~sl~~spdg~~L 201 (713)
.+..|.+.|++|+|+|+ +.+||+++.||+|+|||+.+.+. ...+.+|...|++++|+++ ..|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence 35568899999999997 57999999999999999976542 2467889999999999975 589
Q ss_pred EEEeCCCcEEEEEcCCCc-eeeeeccCCCCeeEE--EEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCC--ceEE
Q 005123 202 VSGDDGGAIKYWQNNMNN-VKANKSAHKESVRDL--SFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGW--DVKS 275 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~-~~~~~~~~~~~V~~l--~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~--~V~s 275 (713)
++|+.||+|++||++++. ....+..|...|++| +|++++ .+|++++.|++|+|||+++.+.+..+.+|.. .|.+
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP 360 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCC
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccc
Confidence 999999999999999764 445578899999999 567887 8999999999999999998877666666653 5889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------------
Q 005123 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA------------ 343 (713)
Q Consensus 276 l~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t------------ 343 (713)
|+|+|+++.|++++.|++|+|||++++.++..+.+|.+.|++|+|+|++++|++|+.|++|+|||+..
T Consensus 361 v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~ 440 (524)
T 2j04_B 361 VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSAT 440 (524)
T ss_dssp EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------
T ss_pred eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccc
Confidence 99999999999999999999999999998888989999999999999999999999999999998531
Q ss_pred --------------------------------CeeEEEeecCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCC
Q 005123 344 --------------------------------MKELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 344 --------------------------------~~~l~~~~~h~~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~ 387 (713)
+..+..+.+|...|.+|+|+|+. +.+||+|+.||.|+||+++.+
T Consensus 441 ~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 441 QKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 11122344577889999999943 459999999999999998643
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.1e-31 Score=275.44 Aligned_cols=245 Identities=22% Similarity=0.390 Sum_probs=216.1
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+.+|...|++++|++++++||+|+.||.|+|||+++++.+..+.+|...+.++.+ +++.|++++.++.+++|+....
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCC
Confidence 35678999999999999999999999999999999999999999999999887766 5789999999999999998876
Q ss_pred -ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee----EEEEccCCCceEEEEEcCCCCEE---EEEeC
Q 005123 219 -NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE----ERSLTGHGWDVKSVDWHPTKSLL---VSGGK 290 (713)
Q Consensus 219 -~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~----~~~l~~h~~~V~sl~~spdg~~L---~sgs~ 290 (713)
..+..+..|...+..+.+++++++|++++.|++|++||+++++. ......+...|.++++++++..+ ++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 219 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence 45566788999999999999999999999999999999987543 34556678899999999966533 45667
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCC
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs--~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~ 368 (713)
+++|++||.+......... +...+..+.|+++++.+++++ .|+.|+|||+++++.+.++.+|.+.|++++|++ ++.
T Consensus 220 ~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~ 297 (318)
T 4ggc_A 220 DRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGA 297 (318)
T ss_dssp TCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSS
T ss_pred CCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCC
Confidence 8999999999887766654 677899999999999888765 799999999999999999999999999999999 789
Q ss_pred EEEEEECCCcEEEEEcCCC
Q 005123 369 YFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~ 387 (713)
+|++++.||+|+|||+.+.
T Consensus 298 ~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEETTTEEEEECCSCC
T ss_pred EEEEEecCCeEEEEECCCC
Confidence 9999999999999998653
No 102
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.1e-32 Score=292.01 Aligned_cols=281 Identities=14% Similarity=0.171 Sum_probs=220.3
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~ 217 (713)
.+..|.+.|+|++|++|+++|++|+.++ ++|||+.+++....... ..+..+++..+++.++ +++.|++|+|||+.+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 4578999999999999999999998775 78999988766554433 3578888988888874 677889999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEE--EeCCCcE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVS--GGKDSLV 294 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~s--gs~Dg~I 294 (713)
++.+..+. +...|.+++|+++ .++++ .|+.|++||+.+. +.+..+.. ....+++++ .++++ ++.||.|
T Consensus 91 ~~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 91 KQDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp TEEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCE
T ss_pred CcEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEE
Confidence 99888775 6679999999865 34444 3789999999887 55555543 344555665 56666 5789999
Q ss_pred EEEECCCCc----------------eEEEEccCCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCeeEEEee-c-CCC
Q 005123 295 KLWDAKSGR----------------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFR-G-HRK 355 (713)
Q Consensus 295 ~IwDl~t~~----------------~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~-I~IwDl~t~~~l~~~~-~-h~~ 355 (713)
++||+++++ .+..+.+|...|++++|++++++|++++.|++ |+|||+++++.+..+. + |..
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~ 241 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA 241 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence 999999865 26788999999999999999999999999998 9999999999999998 5 999
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceE-EE---------------------ecccCCCeEEEEEcCCCcEE
Q 005123 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV-EI---------------------HNVHDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~-~~---------------------~~~h~~~V~~l~~spdg~~l 413 (713)
.|++++|++ ++++|++++.|++|+|||++...... .. ...+......++|++++..+
T Consensus 242 ~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l 320 (355)
T 3vu4_A 242 DVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLV 320 (355)
T ss_dssp CEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEE
T ss_pred cEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEE
Confidence 999999999 89999999999999999997543111 11 11112234679999999666
Q ss_pred EE--eCCcEEEEecCCCCCcc
Q 005123 414 CS--NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 414 aS--~Dg~v~iWd~~~~~~~~ 432 (713)
+. .|+.+++|++...++..
T Consensus 321 ~~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 321 VVWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp EEETTTTEEEEEEEEEETTTT
T ss_pred EEEeCCCeEEEEEEEcCCCCc
Confidence 54 89999999986655443
No 103
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.4e-32 Score=298.78 Aligned_cols=253 Identities=21% Similarity=0.414 Sum_probs=223.2
Q ss_pred eEEEEeeCCCCCceEEEEEccC-CCEEEEEECCCcEEEEeCCC----------CceEEEEeccCCCEEEEEEccCCC-EE
Q 005123 134 KFVHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS----------FNFEMILQAHDHAIRSMVWSHNDN-WM 201 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t----------~~~~~~l~~h~~~V~sl~~spdg~-~L 201 (713)
++....+..|.+.|++++|+++ +++||+++.||.|+|||+.+ .+.+..+..|...|++++|+++++ +|
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred ceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence 4445566789999999999997 68999999999999999876 677888999999999999999988 99
Q ss_pred EEEeCCCcEEEEEcCCCce-------eeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCC---eeEEEEccCC
Q 005123 202 VSGDDGGAIKYWQNNMNNV-------KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC---QEERSLTGHG 270 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~~-------~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~---~~~~~l~~h~ 270 (713)
++++.||.|+|||+.++.. ...+..|...|.+++|++ ++.+|++++.|+.|++||+++. +.+..+..|.
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 9999999999999987422 345568899999999999 6789999999999999999876 5677778899
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CceEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCC----
Q 005123 271 WDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRA---- 343 (713)
Q Consensus 271 ~~V~sl~~spdg~-~L~sgs~Dg~I~IwDl~t-~~~~~~~~~h~~~I~si~fspdg~-~Latgs~Dg~I~IwDl~t---- 343 (713)
..|++|+|++++. +|++++.|+.|+|||+++ ...+..+..|...|++++|+++++ +|++++.|+.|+|||++.
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 9999999999887 789999999999999998 567888888999999999999885 689999999999999986
Q ss_pred ----------CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 344 ----------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 344 ----------~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
.+.+..+.+|...|++++|++++..+|++++.||.|+||++..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 3567788889999999999994444999999999999999854
No 104
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=303.80 Aligned_cols=270 Identities=17% Similarity=0.193 Sum_probs=221.9
Q ss_pred EccCCCEEEEEECCCcEEEEeCCCCceEEEE-eccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCC---Cc---eeee
Q 005123 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNM---NN---VKAN 223 (713)
Q Consensus 152 ~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~~---~~---~~~~ 223 (713)
|+++++.+++++ +|+ .+++.+..+ .+|.+.|++++|++ ++++|++|+.||+|+|||+.+ +. ....
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 566676666554 387 456777788 88999999999999 999999999999999999876 33 2222
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC---CCeeEEEEcc------------CCCceEEEE--EcCCCCEEE
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQEERSLTG------------HGWDVKSVD--WHPTKSLLV 286 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~---~~~~~~~l~~------------h~~~V~sl~--~spdg~~L~ 286 (713)
+ .|...|++++|++++++|++++.|++|++||++ +++.+..+.. +...+.++. +++++++|+
T Consensus 108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred c-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 2 589999999999999999999999999999994 4443333221 455677776 567899999
Q ss_pred EEeCCCcEEEEECCCCceEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEEEEEe
Q 005123 287 SGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWH 363 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl~fs 363 (713)
+++.|+.|++||+++++.+..+.. |...|++++|++++++|++++.|+.|+|||+++++.+..+. .|...|++++|+
T Consensus 187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 266 (437)
T 3gre_A 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVC 266 (437)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEEC
T ss_pred EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEec
Confidence 999999999999999999999987 78999999999999999999999999999999999999886 788899999777
Q ss_pred CC---CCCEEEEEECCCcEEEEEcCCCCceEEEec-------------------------ccCCCeEEEEEcCCCcEEEE
Q 005123 364 PF---HEEYFVSGSLDGSIFHWLVGHETPQVEIHN-------------------------VHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 364 p~---~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~-------------------------~h~~~V~~l~~spdg~~laS 415 (713)
+. ++.+|++++.||.|+|||+++......+.. .|...|++++|+ ++.++++
T Consensus 267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s 345 (437)
T 3gre_A 267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT 345 (437)
T ss_dssp TTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE
T ss_pred cccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe
Confidence 52 567999999999999999987764444331 166779999999 6655544
Q ss_pred --eCCcEEEEecCCCCC
Q 005123 416 --NDHTTKFWCRNRPGD 430 (713)
Q Consensus 416 --~Dg~v~iWd~~~~~~ 430 (713)
.|+.|++||+.....
T Consensus 346 ~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 346 DEATSSIVMFSLNELSS 362 (437)
T ss_dssp EGGGTEEEEEETTCGGG
T ss_pred cCCCCeEEEEECCCccc
Confidence 899999999976543
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.2e-31 Score=293.42 Aligned_cols=246 Identities=15% Similarity=0.257 Sum_probs=215.6
Q ss_pred eeCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCC-------ceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCc
Q 005123 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGA 209 (713)
Q Consensus 139 ~l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~-------~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~ 209 (713)
.+.+|.+.|++++|++ ++++|++|+.||.|+|||+.++ +.+..+.+|...|.+++|++++ ++|++++.|+.
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 3568999999999999 9999999999999999999987 5678899999999999999998 69999999999
Q ss_pred EEEEEcCCCceeeee--ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-ccCCCc-eEEEEEcCCCCEE
Q 005123 210 IKYWQNNMNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWD-VKSVDWHPTKSLL 285 (713)
Q Consensus 210 I~vwdl~~~~~~~~~--~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~~h~~~-V~sl~~spdg~~L 285 (713)
|+|||+++++.+..+ ..|...|.+++|++++++|++++.|+.|++||+++++.+..+ ..|... +.+++|++++++|
T Consensus 156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence 999999999998888 789999999999999999999999999999999999998888 677765 8999999999999
Q ss_pred EEE---eCCCcEEEEECCCCce-EEEE-ccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCee-EEEeec--CCCC
Q 005123 286 VSG---GKDSLVKLWDAKSGRE-LCSF-HGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKE-LESFRG--HRKD 356 (713)
Q Consensus 286 ~sg---s~Dg~I~IwDl~t~~~-~~~~-~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~~-l~~~~~--h~~~ 356 (713)
+++ +.|+.|++||+++++. +... ..+...|.+++|++++++|+++ +.|+.|++||+++++. +..+.. |...
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~ 315 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES 315 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSC
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCc
Confidence 999 7899999999998765 3332 2467789999999999999755 4799999999998773 444443 5589
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
|.+++|++ ++.++++ .++.+++|++.++
T Consensus 316 v~~~~~sp-~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 316 QRGMGYMP-KRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CSEEEECC-GGGSCGG--GTEEEEEEEEETT
T ss_pred ccceEEec-cccccee--cceeEEEEEcCCC
Confidence 99999999 6766654 5669999998654
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.3e-32 Score=291.94 Aligned_cols=246 Identities=13% Similarity=0.153 Sum_probs=202.8
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEE-----------CCCcEEEEeCCCCceEEE----E-----eccCCCEEEEEEccC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGS-----------QSGEFTLWNGQSFNFEMI----L-----QAHDHAIRSMVWSHN 197 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs-----------~dg~V~Iwd~~t~~~~~~----l-----~~h~~~V~sl~~spd 197 (713)
..|.+|.+.|.+++++ ++.+++|+ .|+.|++|++.+.+.... . ..++..+.+++|+||
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 4577899999998775 55676664 467899998765432221 1 123456899999999
Q ss_pred CCEEEEEe--CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE--EccCCCce
Q 005123 198 DNWMVSGD--DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS--LTGHGWDV 273 (713)
Q Consensus 198 g~~L~sgs--~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~--l~~h~~~V 273 (713)
|++|++++ .|++|+|||+++++.+..+. |...|.+++|++|+++|++++.| .+++|+..+++.+.. ...|...|
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCE
Confidence 99987554 78999999999999888774 77889999999999999999855 566777666665433 34578889
Q ss_pred EEEEEcCCCCEEEEEeCCC----cEEEEECCCCce----EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005123 274 KSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRE----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg----~I~IwDl~t~~~----~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~ 345 (713)
.+++|+++++++++++.|+ .|++||+..... ...+.+|...|++++|+|||++||+|+.|++|+|||+++++
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence 9999999999999999887 688899877653 34567889999999999999999999999999999999999
Q ss_pred eEEEe-ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 346 ELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 346 ~l~~~-~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.+..+ .+|...|++|+|+| ++++||++|.|++|+|||+....
T Consensus 303 ~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTTT
T ss_pred EEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCC
Confidence 99875 78999999999999 89999999999999999996543
No 107
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=324.12 Aligned_cols=250 Identities=20% Similarity=0.330 Sum_probs=221.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCC--CCceEEEEeccCCCEEEEEEccC--CCEEEEEeCCCcEEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYW 213 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~--t~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~DG~I~vw 213 (713)
..+.+|.+.|++++|++++++|++|+.||.|+|||+. +.+.+..+.+|.+.|++++|+++ +++|++++.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4578999999999999999999999999999999987 55677888999999999999988 8999999999999999
Q ss_pred EcCCCc--eeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCC--eeEEEEccCCCceEEEEEcC-------
Q 005123 214 QNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARC--QEERSLTGHGWDVKSVDWHP------- 280 (713)
Q Consensus 214 dl~~~~--~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~--~~~~~l~~h~~~V~sl~~sp------- 280 (713)
|+.+++ ....+..|...|++++|+++ +++|++++.||+|++||+++. .....+..|...|.+++|++
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 66777889999999999999 999999999999999999876 34456678999999999999
Q ss_pred ------CCCEEEEEeCCCcEEEEECCCC----ceEEEEccCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCe--
Q 005123 281 ------TKSLLVSGGKDSLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMK-- 345 (713)
Q Consensus 281 ------dg~~L~sgs~Dg~I~IwDl~t~----~~~~~~~~h~~~I~si~fspd---g~~Latgs~Dg~I~IwDl~t~~-- 345 (713)
++++|++++.||.|++||++++ ..+..+.+|...|++++|+++ +++|++++.||.|+|||+++++
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 5899999999999999999887 455677889999999999999 8999999999999999999864
Q ss_pred ---eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 346 ---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 346 ---~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.+.....|...|++++|++ ++.+|++++.||.|+|||++...
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred ceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 3344456888999999999 78999999999999999997544
No 108
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.9e-32 Score=298.87 Aligned_cols=247 Identities=17% Similarity=0.220 Sum_probs=203.7
Q ss_pred eeCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEecc--CCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 139 ~l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
.+.+|.+.|++|+|+| ++++|++|+.||+|+|||+++.........+ ...+.+++|++++++|++|+.||.|++||+
T Consensus 159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~ 238 (435)
T 4e54_B 159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238 (435)
T ss_dssp CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence 4678999999999997 6899999999999999999876554444433 345789999999999999999999999998
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCeeEEE---EccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERS---LTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~~~~~---l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
+. +.+..+..|...|++++|++++. +|++++.|++|+|||+++.+.... ..+|...|++++|++++++|++++.|
T Consensus 239 ~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D 317 (435)
T 4e54_B 239 DG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 317 (435)
T ss_dssp SS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS
T ss_pred Cc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCC
Confidence 75 45566788999999999999876 688999999999999987654333 35688999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCC------CeEEEEEcCCCCEEEEEE------------CCCeEEEEECCCCeeEEEee-c
Q 005123 292 SLVKLWDAKSGRELCSFHGHKN------MVLCVKWNQNGNWVLTAS------------KDQIIKLYDIRAMKELESFR-G 352 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~------~I~si~fspdg~~Latgs------------~Dg~I~IwDl~t~~~l~~~~-~ 352 (713)
+.|+|||+++++....+..|.. .+..+.|++++.++++++ .++.|+|||+.+++.+..+. .
T Consensus 318 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~ 397 (435)
T 4e54_B 318 SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397 (435)
T ss_dssp SCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS
T ss_pred CEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC
Confidence 9999999999988887765543 234567788777777664 23579999999999887764 6
Q ss_pred CCCCeEEE-EEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 353 HRKDVTAL-AWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 353 h~~~V~sl-~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
|...|.++ +|+| ++.+|++|+ |+.|+|||+++++
T Consensus 398 ~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 398 ESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC---
T ss_pred CCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECCcCe
Confidence 77888887 6999 788888876 7899999997664
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=300.85 Aligned_cols=262 Identities=13% Similarity=0.120 Sum_probs=216.3
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
.+.-...|.+|+|++||+++|+++.|++|+ |.+..+. +.+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~ 78 (588)
T 2j04_A 11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQNG 78 (588)
T ss_dssp SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC
T ss_pred HhHhhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCce
Confidence 345568899999999999999999999999 7555543 37899999999999998 56666666544333
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC-----ceEEEEEcCCCCEEEEEeCCCcE
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-----DVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~-----~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
. ..+ .+...|.+++|+++|.+||+++.||+|+|||.+. .+..+. |.. .|.+++|+|||++|++|+.||+|
T Consensus 79 ~-~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 79 L-LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp S-STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred E-eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 2 222 4578999999999999999999999999999644 555566 554 59999999999999999999999
Q ss_pred EEEECCCCce-------EEEE----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee---EEEe-ecCCCCeEE
Q 005123 295 KLWDAKSGRE-------LCSF----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESF-RGHRKDVTA 359 (713)
Q Consensus 295 ~IwDl~t~~~-------~~~~----~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~---l~~~-~~h~~~V~s 359 (713)
+|||+++++. +.++ .+|..+|.+++|+||| |++++.|++|++||+.+.+. ..++ .+|...|.+
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 9999998753 5666 5677899999999999 88899999999999987773 3556 478899999
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEE--cCCCcEEEE--eCCcEEEEecC
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW--HPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~--spdg~~laS--~Dg~v~iWd~~ 426 (713)
++|+ +..||+++ +++|++||+....... ...+|.+.|++++| ++|+..+++ .||+ ++|.++
T Consensus 232 vaFs---g~~LASa~-~~tIkLWd~~~~~~~~-~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 232 LKIV---DYKVVLTC-PGYVHKIDLKNYSISS-LKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEE---TTEEEEEC-SSEEEEEETTTTEEEE-EECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEE---CCEEEEEe-CCeEEEEECCCCeEEE-EEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9998 47888887 6999999997655433 33379999999999 999977765 6889 999985
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.6e-31 Score=286.58 Aligned_cols=263 Identities=10% Similarity=0.039 Sum_probs=213.3
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC---------CCcee
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---------MNNVK 221 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~---------~~~~~ 221 (713)
.+..++++|++|+.||.|+|||+.+++.+..+. ...|.++.|+++ |++++.|++|++|+.+ +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344577899999999999999999998888776 467888889887 9999999999999765 44433
Q ss_pred eee-ccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 222 ANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 222 ~~~-~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
..+ ..|...|.+++|++ ++++|++++.|++|++||+++++.+..+. .+...|.+++|++++.+|++|+.|+.|+||
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 333 35668899999999 99999999999999999999988876664 345579999999999999999999999999
Q ss_pred ECCCCceE-EEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec---CCCCeE--EEEEeCCCCCEE
Q 005123 298 DAKSGREL-CSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVT--ALAWHPFHEEYF 370 (713)
Q Consensus 298 Dl~t~~~~-~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~---h~~~V~--sl~fsp~~~~~l 370 (713)
|+++++.+ ..+.. |...|++++|++++.+|++++. +.|+|||+++.+.+..+.. |...+. +++|++ ++.+|
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l 275 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNM 275 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEE
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEE
Confidence 99999987 78887 9999999999999999999995 4999999999877655543 333343 699999 78999
Q ss_pred EEEEC-CCcEEEEEcCCCCceEEEecccCCCeEEEEEcC---CCcEE--EEeCCcEEEEec
Q 005123 371 VSGSL-DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP---IGYLL--CSNDHTTKFWCR 425 (713)
Q Consensus 371 asgs~-DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp---dg~~l--aS~Dg~v~iWd~ 425 (713)
++++. |+.|+||++++....... ..+..++|.+ +...+ ++.|+.++++-.
T Consensus 276 ~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp EEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred EEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 99998 999999999766554443 4577788887 65444 458999998854
No 111
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=7.2e-31 Score=289.62 Aligned_cols=243 Identities=19% Similarity=0.388 Sum_probs=203.4
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-----------eeeeeccCC------------CCeeEEEEecCC-
Q 005123 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----------VKANKSAHK------------ESVRDLSFCRTD- 240 (713)
Q Consensus 185 h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~-----------~~~~~~~~~------------~~V~~l~fs~dg- 240 (713)
+.+.|++++|++++++|++|+.||.|+|||+.+++ ....+.+|. ..|++++|++++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 57899999999999999999999999999998876 467778888 889999999998
Q ss_pred -CEEEEEECCCeEEEEEcCCCeeE---------------------------------------EE-EccCCCceEEEEEc
Q 005123 241 -LKFCSCSDDTTVKVWDFARCQEE---------------------------------------RS-LTGHGWDVKSVDWH 279 (713)
Q Consensus 241 -~~Las~s~Dg~I~iwDl~~~~~~---------------------------------------~~-l~~h~~~V~sl~~s 279 (713)
.+|++++.|++|++||+.+.... .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998764332 12 35799999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-CceEEE-------EccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCee----
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKS-GRELCS-------FHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKE---- 346 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t-~~~~~~-------~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~~~---- 346 (713)
+++++|+++ .|+.|+|||+++ ++.+.. +..|...|++++|++++ ++|++++.|+.|+|||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 799999999994 444442 45788999999999998 9999999999999999999886
Q ss_pred EEEeecCCC------------CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCC--------------
Q 005123 347 LESFRGHRK------------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT-------------- 400 (713)
Q Consensus 347 l~~~~~h~~------------~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~-------------- 400 (713)
+..+..|.. .|++++|++ ++.+|++++. +.|+|||++.....+..+..|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 788888876 899999999 8899999999 999999998744444555555431
Q ss_pred -eEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 401 -VWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 401 -V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
+..++|++++.+|++ .|+.|+|||++....
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 334999999987765 899999999976543
No 112
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=2.8e-30 Score=274.13 Aligned_cols=236 Identities=14% Similarity=0.165 Sum_probs=210.9
Q ss_pred eCCCCCceEEEEEccCCC-EEEEEECCCcEEEEeC-CCCceEEEEec--cCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNG-QSFNFEMILQA--HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~-~t~~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+.+|...|++++|+++++ +|++++.||.|++||+ .+++. ..+.. |...|.+++|++ +++|++++.|+.|++||+
T Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~ 129 (342)
T 1yfq_A 52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECH
T ss_pred eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcc
Confidence 347999999999999999 9999999999999999 77654 67788 999999999999 999999999999999999
Q ss_pred CC---------CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-Ce--eEEEEccCCCceEEEEEcC-CC
Q 005123 216 NM---------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQ--EERSLTGHGWDVKSVDWHP-TK 282 (713)
Q Consensus 216 ~~---------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-~~--~~~~l~~h~~~V~sl~~sp-dg 282 (713)
++ .+.+..+. +...|.+++|++++ |++++.|+.|++||+++ .. .......+...|.+++|++ ++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 130 RNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp HHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred cccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC
Confidence 87 66665555 88999999999877 99999999999999987 44 3345556888999999999 99
Q ss_pred CEEEEEeCCCcEEEEECCCC------ceEEEEccCCC---------CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 283 SLLVSGGKDSLVKLWDAKSG------RELCSFHGHKN---------MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~------~~~~~~~~h~~---------~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
++|++++.|+.|+|||++.. +.+..+..|.. .|++++|++++++|++++.||.|+|||+++++.+
T Consensus 207 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence 99999999999999999887 77788887755 9999999999999999999999999999999999
Q ss_pred EEeecC-CCCeEEEEEeCCCCCEEEEEECCCc-EEEEE
Q 005123 348 ESFRGH-RKDVTALAWHPFHEEYFVSGSLDGS-IFHWL 383 (713)
Q Consensus 348 ~~~~~h-~~~V~sl~fsp~~~~~lasgs~DG~-I~Iwd 383 (713)
..+..| ...|++++ + ++.+|++++.||. .+.|.
T Consensus 287 ~~~~~~h~~~v~~~~--~-~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 287 KNFAKFNEDSVVKIA--C-SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EECCCCSSSEEEEEE--E-CSSEEEEEEECTHHHHCSS
T ss_pred hhhhcccCCCceEec--C-CCCeEEEEecCCccccccc
Confidence 999998 99999999 6 7899999999998 55555
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=6.6e-30 Score=281.26 Aligned_cols=276 Identities=12% Similarity=0.046 Sum_probs=234.5
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEE-----EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM-----ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~-----~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
..+.+++|+++++++++++.|+.|++||+.+++... .+..|...|.+++|+++++++++++.|+.|++||+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 456799999977778888888999999999998876 344788899999999999999999999999999999999
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe--------C
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG--------K 290 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs--------~ 290 (713)
.+..+..+...+.+++|+++++++++++ .|+.|++||+++++.+..+.. ...+.+++|++++++|++++ .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccC
Confidence 8888888899999999999999886555 799999999999988877765 45699999999999999988 5
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV-LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~L-atgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
|+.|++||+++++.+..+. +...+.+++|++++++| ++++.|+.|++||+++++.+..+. +...+.+++|++ ++++
T Consensus 282 dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~ 358 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKY 358 (433)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSE
T ss_pred CCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCE
Confidence 8899999999988776663 55688999999999765 556889999999999999888776 678899999999 6777
Q ss_pred EEEEEC---------------CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-E--eCCcEEEEecC
Q 005123 370 FVSGSL---------------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-S--NDHTTKFWCRN 426 (713)
Q Consensus 370 lasgs~---------------DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S--~Dg~v~iWd~~ 426 (713)
|++++. ||.|++||+.+.+....+ .. ...+.+++|++++.+++ + .|+.|+||+++
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~-~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW-EA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE-EC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCcEEEEe-cC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 777766 579999999776644333 32 56799999999997664 3 49999999986
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.4e-30 Score=285.23 Aligned_cols=231 Identities=14% Similarity=0.186 Sum_probs=175.6
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCcee-----eeeccCCCCeeEEEEec--------CCCEEEEEECCCeEEEEEcCCCe
Q 005123 195 SHNDNWMVSGDDGGAIKYWQNNMNNVK-----ANKSAHKESVRDLSFCR--------TDLKFCSCSDDTTVKVWDFARCQ 261 (713)
Q Consensus 195 spdg~~L~sgs~DG~I~vwdl~~~~~~-----~~~~~~~~~V~~l~fs~--------dg~~Las~s~Dg~I~iwDl~~~~ 261 (713)
.+++++|++++.|++|+|||+++++.. ..+.+|.+.|++++|++ |+++|++++.|++|+|||+++..
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 344568999999999999999887543 34678999999999997 78999999999999999999888
Q ss_pred eEEEEccCCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEE-------------------------ccCCCCe
Q 005123 262 EERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSF-------------------------HGHKNMV 315 (713)
Q Consensus 262 ~~~~l~~h~~~V~sl~~spdg-~~L~sgs~Dg~I~IwDl~t~~~~~~~-------------------------~~h~~~I 315 (713)
.+..+..|...|.+++|+|++ ++|++++.|++|++||+++++..... .+|...+
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 888888899999999999987 48999999999999999987653322 2466778
Q ss_pred EEEEEc-CCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEE------------------EeC-CCCCEEEEEEC
Q 005123 316 LCVKWN-QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA------------------WHP-FHEEYFVSGSL 375 (713)
Q Consensus 316 ~si~fs-pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~------------------fsp-~~~~~lasgs~ 375 (713)
.++.|+ +|++.|++++.|++|+|||+.+++....+..|...+..+. |++ .++.++++++.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 899987 6999999999999999999998877666655554443333 332 23446778889
Q ss_pred CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecC
Q 005123 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRN 426 (713)
Q Consensus 376 DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~ 426 (713)
||+|+|||+.++...... ..|...|++|+|++||.+||+ .++.+.+|.+.
T Consensus 338 Dg~V~lwd~~~~~~~~~~-~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIP-IQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp TTEEEEEETTCTTCCEEE-EECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred CCEEEEEECCCCcEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 999999999887765544 467889999999999999976 77888888764
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-30 Score=307.63 Aligned_cols=251 Identities=21% Similarity=0.365 Sum_probs=216.6
Q ss_pred EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEE
Q 005123 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN--MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKV 254 (713)
Q Consensus 179 ~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~--~~~~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~i 254 (713)
+..+.+|.+.|++++|++++++|++|+.||.|+|||+. +......+..|...|++++|+++ +++|++++.||+|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999998 45677788899999999999988 999999999999999
Q ss_pred EEcCCCe--eEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eEEEEccCCCCeEEEEEcC------
Q 005123 255 WDFARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQ------ 322 (713)
Q Consensus 255 wDl~~~~--~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h~~~I~si~fsp------ 322 (713)
||+.+++ .+..+..|...|.+++|+++ +++|++++.|+.|++||++++. ....+..|...|++++|++
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999886 67778889999999999999 9999999999999999998873 4456678999999999999
Q ss_pred -------CCCEEEEEECCCeEEEEECCCC----eeEEEeecCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCCCc
Q 005123 323 -------NGNWVLTASKDQIIKLYDIRAM----KELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 323 -------dg~~Latgs~Dg~I~IwDl~t~----~~l~~~~~h~~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
++++|++|+.||.|++||++++ ..+..+.+|...|++++|++++ +.+|++++.||.|++||+++...
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5899999999999999999876 5667888999999999999943 89999999999999999987632
Q ss_pred ----eEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 390 ----QVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 390 ----~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
.......|...|++++|++++.++++ .|+.|+||+++..+
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 22223447889999999999976654 89999999997544
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.7e-28 Score=266.21 Aligned_cols=265 Identities=13% Similarity=0.080 Sum_probs=221.4
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEE
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L-~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~ 235 (713)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|++++++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 357788899999999999999988888765 58999999999987 566689999999999999888776554 999999
Q ss_pred EecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEccCCC
Q 005123 236 FCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKN 313 (713)
Q Consensus 236 fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L-~sgs~Dg~I~IwDl~t~~~~~~~~~h~~ 313 (713)
|++++++|++++ .++.|++||+.+++.+..+.. ...+.+++|++++++| ++++.|+.|++||+++++.+..+..+ .
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999886555 679999999999988887774 4578999999999977 67778999999999999988888754 5
Q ss_pred CeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE---CCCcEEEEEcCCCCc
Q 005123 314 MVLCVKWNQNGNWV-LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS---LDGSIFHWLVGHETP 389 (713)
Q Consensus 314 ~I~si~fspdg~~L-atgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs---~DG~I~Iwd~~~~~~ 389 (713)
.+.+++|++++++| ++++.|+.|++||+++++.+..+. +...+.+++|++ ++++|++++ .++.|++||+++...
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 67999999999988 566788999999999998887776 556789999999 677777776 789999999987654
Q ss_pred eEEEecccCCCeEEEEEcCCCcEE-EE--eCCcEEEEecCCCC
Q 005123 390 QVEIHNVHDNTVWDLAWHPIGYLL-CS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~l-aS--~Dg~v~iWd~~~~~ 429 (713)
.. .+..| ..+.+++|++++..+ ++ .|+.|++||++...
T Consensus 237 ~~-~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 237 TA-RIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EE-EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EE-EEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 43 33334 458999999999655 44 79999999997643
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-29 Score=278.90 Aligned_cols=245 Identities=16% Similarity=0.154 Sum_probs=211.7
Q ss_pred eCCCCCceEEEEEccCCCEE-EEEECCCcEEEEeCC--CCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 140 LNKNRCSINRVLWTPTGRRL-ITGSQSGEFTLWNGQ--SFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~L-atgs~dg~V~Iwd~~--t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
...|.+.|++++|++++++| ++++.||.|+|||+. +++.+..+. .|...|++++|++++++|++++.||.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 34688899999999999996 888899999999998 888888876 5678999999999999999999999999999
Q ss_pred cCCCceee----eeccCCCCeeEEEEecC---CCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEE
Q 005123 215 NNMNNVKA----NKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 215 l~~~~~~~----~~~~~~~~V~~l~fs~d---g~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~ 286 (713)
+.+++... .+..|...|++++|+++ +++|++++.|++|++||+.+++.+.. +.+|...|.+++|+ ++++|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 98876544 66789999999999999 99999999999999999998887777 55899999999999 999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEcc-------------------------CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 005123 287 SGGKDSLVKLWDAKSGRELCSFHG-------------------------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYD 340 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~~~~~-------------------------h~~~I~si~fspdg~~Latgs-~Dg~I~IwD 340 (713)
+++.|+.|+|||+++++.+..+.. ....|.+++|++++++|++++ .|+.|+|||
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 999999999999999998887752 245799999999999999999 899999999
Q ss_pred C--CCC---eeEEEeecCCCCeEEEEEeCCCCCEEEEEEC-------CCcEEEEEcCCCC
Q 005123 341 I--RAM---KELESFRGHRKDVTALAWHPFHEEYFVSGSL-------DGSIFHWLVGHET 388 (713)
Q Consensus 341 l--~t~---~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~-------DG~I~Iwd~~~~~ 388 (713)
+ .++ +.+..+..| ..|.+++|++ ++ ++++.+. +..|.||.++...
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~-~~v~~~~~~~~~~~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHN-DE-FQVTLDNKESSGVQKNFAKFIEYNLNE 393 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEET-TE-EEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred eccCCCCceeeccEeccC-CceEEEEecC-Cc-EEEEEecccCCCCCCcceEEEEEEcCC
Confidence 9 555 677788877 8899999998 54 4444433 4558888875443
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=4.4e-28 Score=262.95 Aligned_cols=240 Identities=12% Similarity=0.119 Sum_probs=205.5
Q ss_pred CceEEEEEccCCCEE-EEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~L-atgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~ 222 (713)
..+.+++|++++++| ++++.|+.|++||+.+++.+..+..+. .|.+++|++++++|++++ .++.|++||+.+++.+.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 358999999999987 566689999999999999988887665 999999999999886554 67999999999998877
Q ss_pred eeccCCCCeeEEEEecCCCEE-EEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 005123 223 NKSAHKESVRDLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAK 300 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~L-as~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L-~sgs~Dg~I~IwDl~ 300 (713)
.+.. ...+.+++|++++++| ++++.|+.|++||+.+++.+..+..+ ..+.+++|++++++| ++++.|+.|++||++
T Consensus 111 ~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~ 188 (391)
T 1l0q_A 111 TVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (391)
T ss_dssp EEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 7654 4578999999999987 67778999999999999888887754 567999999999887 567788999999999
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE-EEEEECC
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY-FVSGSLD 376 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs---~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~-lasgs~D 376 (713)
+++.+..+. +...+.+++|++++++|++++ .++.|++||+++++.+..+..+. .+.+++|++ ++++ +++++.|
T Consensus 189 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d 265 (391)
T 1l0q_A 189 TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFX 265 (391)
T ss_dssp TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTT
T ss_pred CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCC
Confidence 998887776 566799999999999999888 68999999999999988888654 589999999 5554 4777889
Q ss_pred CcEEEEEcCCCCce
Q 005123 377 GSIFHWLVGHETPQ 390 (713)
Q Consensus 377 G~I~Iwd~~~~~~~ 390 (713)
+.|++||+.++...
T Consensus 266 ~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 266 NTVSVIDTATNTIT 279 (391)
T ss_dssp TEEEEEETTTTEEE
T ss_pred CEEEEEECCCCcEE
Confidence 99999999876543
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3.6e-29 Score=267.03 Aligned_cols=243 Identities=13% Similarity=0.174 Sum_probs=206.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEE--ccCCCEEEEEeCCCcEEEEEc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVW--SHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~--spdg~~L~sgs~DG~I~vwdl 215 (713)
..+.+|.+.|++++|++++++|++++.||.|+|||+.+++.+. +..|...|++++| ++++++|++++.||.|++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 3566799999999999999999999999999999999988665 5679999999999 889999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCE----EEEEe
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSL----LVSGG 289 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~----L~sgs 289 (713)
++++.+..+..+. .+.++.+. ...+++++.++.+++||++......... .+...+.++++..+... +++++
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 159 RSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp SCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence 9998887776554 56666665 4588999999999999998765443322 23345566666554443 99999
Q ss_pred CCCcEEEEECCCC---ceEEEEccCCC------------CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC
Q 005123 290 KDSLVKLWDAKSG---RELCSFHGHKN------------MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 290 ~Dg~I~IwDl~t~---~~~~~~~~h~~------------~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
.|+.|++||++.. +.+..+..|.. .|++++|++++++|++++.|+.|+|||+++++.+..+..|.
T Consensus 236 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 315 (368)
T 3mmy_A 236 IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLD 315 (368)
T ss_dssp TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCC
Confidence 9999999999987 55677777765 69999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
..|++++|++ ++.+|++++.|+..+.|++.
T Consensus 316 ~~v~~~~~s~-~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 316 QPISACCFNH-NGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp SCEEEEEECT-TSSCEEEEECCCSTTCGGGC
T ss_pred CCceEEEECC-CCCeEEEEeccccccccccc
Confidence 9999999999 78999999999866666553
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=292.81 Aligned_cols=227 Identities=13% Similarity=0.111 Sum_probs=189.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.+++|...|++|+|+|+| .++.+.+|+.+... .+. .|...|.+++|+|||++||+++.||.|+|||.+.
T Consensus 47 ~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~---~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~ 116 (588)
T 2j04_A 47 DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG---LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK 116 (588)
T ss_dssp CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE
T ss_pred eecCCCccEEEEEECCCC-------CcceEEEEeCCCce---EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc
Confidence 447899999999999999 46666666644222 222 4578899999999999999999999999999654
Q ss_pred CceeeeeccCCC-----CeeEEEEecCCCEEEEEECCCeEEEEEcCCCe-------eEEEE----ccCCCceEEEEEcCC
Q 005123 218 NNVKANKSAHKE-----SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-------EERSL----TGHGWDVKSVDWHPT 281 (713)
Q Consensus 218 ~~~~~~~~~~~~-----~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~-------~~~~l----~~h~~~V~sl~~spd 281 (713)
++..+. |.. .|.+++|++|+++|++|+.||+|+|||+.++. .+.++ .+|...|.+++|+|+
T Consensus 117 --~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 117 --MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp --EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred --eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 555555 554 59999999999999999999999999998875 35665 567789999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCce---EEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCe
Q 005123 282 KSLLVSGGKDSLVKLWDAKSGRE---LCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV 357 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~~~---~~~~-~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V 357 (713)
+ |++++.|++|++||+.+++. ..++ ..|...|.+++|+ +++||+++ +++|++||+.+++......+|...|
T Consensus 194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V 268 (588)
T 2j04_A 194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENF 268 (588)
T ss_dssp E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCC
T ss_pred c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceE
Confidence 9 88899999999999988773 3456 4788899999999 68898887 6999999999888744444799999
Q ss_pred EEEEE--eCCCCCEEEEEECCCcEEEEEcC
Q 005123 358 TALAW--HPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 358 ~sl~f--sp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
..++| ++ ++..|+++++||+ ++|..+
T Consensus 269 ~~va~~~s~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 269 HIIPLNHEK-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEETTCS-SCEEEEECSSCEE-EEEESS
T ss_pred EEEEeeeCC-CCCEEEEEcCCCC-EEEeec
Confidence 99999 98 7889999999999 999874
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.9e-29 Score=276.30 Aligned_cols=243 Identities=9% Similarity=0.050 Sum_probs=180.8
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEE-----EEeccCCCEEEEEEcc--------CCCEEEEEeC
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM-----ILQAHDHAIRSMVWSH--------NDNWMVSGDD 206 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~-----~l~~h~~~V~sl~~sp--------dg~~L~sgs~ 206 (713)
...|...+....+++++++|++++.|++|+|||..+++... .+.+|.+.|++|+|++ |+++|++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 34566666677777788899999999999999998876543 2468999999999997 7899999999
Q ss_pred CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEE--------------------
Q 005123 207 GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERS-------------------- 265 (713)
Q Consensus 207 DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~-------------------- 265 (713)
|++|+|||++++.....+..|...|.+++|+|++ .+|++++.|++|++||+++++....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 9999999999888888888899999999999987 4799999999999999987654322
Q ss_pred -----EccCCCceEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEE------------------EEc
Q 005123 266 -----LTGHGWDVKSVDWH-PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV------------------KWN 321 (713)
Q Consensus 266 -----l~~h~~~V~sl~~s-pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si------------------~fs 321 (713)
..+|...|.++.|+ ++++.|++++.|++|++||+.+++....+..+...+..+ .|+
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 13467788999987 699999999999999999999877666655444433333 233
Q ss_pred C--CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 322 Q--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 322 p--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+ ++.++++|+.|++|+|||+.+++.+..+..|...|++++|+| ++++||++++|| |.+|++
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 3 344567788899999999999999888888999999999999 899999998776 555654
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=7.2e-28 Score=260.05 Aligned_cols=248 Identities=9% Similarity=0.097 Sum_probs=190.1
Q ss_pred EEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE-EEEEC
Q 005123 170 LWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF-CSCSD 248 (713)
Q Consensus 170 Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L-as~s~ 248 (713)
||++.+.+.+..+..|...|++++|++|+++|++|+.++ ++|||+++.+....... ..+..+++..+++.+ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 566666667777788999999999999999999998775 78999988776554332 357888888888887 45777
Q ss_pred CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcCCCCEE
Q 005123 249 DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 249 Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg~~L 327 (713)
|++|++||+.+++.+..+. +...|.+++|+++ .++++ .|+.|+|||+++. +.+..+.. ....+++++ .++
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 8999999999999988887 6679999999865 34444 4789999999988 66665553 444556666 667
Q ss_pred EE--EECCCeEEEEECCCCe----------------eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc-EEEEEcCCCC
Q 005123 328 LT--ASKDQIIKLYDIRAMK----------------ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHET 388 (713)
Q Consensus 328 at--gs~Dg~I~IwDl~t~~----------------~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~-I~Iwd~~~~~ 388 (713)
++ |+.||.|+|||+++++ .+..+.+|...|++++|++ ++++|++++.|++ |+|||++++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCC
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCc
Confidence 76 5789999999999865 2678899999999999999 8999999999998 9999998887
Q ss_pred ceEEEecc-cCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 389 PQVEIHNV-HDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 389 ~~~~~~~~-h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
....+..+ |...|++++|++++.++++ .|++|+|||++....
T Consensus 230 ~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 66666545 9999999999999987764 899999999977543
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.3e-27 Score=251.07 Aligned_cols=234 Identities=12% Similarity=0.165 Sum_probs=182.5
Q ss_pred eEEEEEccCCC---EEEEEECCCcEEEEeCCCC---ceEEEEeccCC-------------------------CEEEEEEc
Q 005123 147 INRVLWTPTGR---RLITGSQSGEFTLWNGQSF---NFEMILQAHDH-------------------------AIRSMVWS 195 (713)
Q Consensus 147 V~~v~~spdg~---~Latgs~dg~V~Iwd~~t~---~~~~~l~~h~~-------------------------~V~sl~~s 195 (713)
|.++-|-..+- .+++++++ .|++|+..+. ++++++..|+. .|++|+|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 45555655443 56677754 7999998887 77888777764 45667777
Q ss_pred cC----CCEEEEEeC--------------------CCcEEEEEc-CCCceeeeeccCCCCeeEEEEec---CCCEEEEEE
Q 005123 196 HN----DNWMVSGDD--------------------GGAIKYWQN-NMNNVKANKSAHKESVRDLSFCR---TDLKFCSCS 247 (713)
Q Consensus 196 pd----g~~L~sgs~--------------------DG~I~vwdl-~~~~~~~~~~~~~~~V~~l~fs~---dg~~Las~s 247 (713)
+| +.++++++. |+.|++|++ .+++.+..+..|...++.++|++ ++.+|++++
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence 78 667776553 888899998 44777777788888888999988 779999999
Q ss_pred CCCeEEEEEcCCCeeEEEEccCC---CceEEEEEcCCCCEE------------EEEeCCCcEEEEECCCCceEEEE----
Q 005123 248 DDTTVKVWDFARCQEERSLTGHG---WDVKSVDWHPTKSLL------------VSGGKDSLVKLWDAKSGRELCSF---- 308 (713)
Q Consensus 248 ~Dg~I~iwDl~~~~~~~~l~~h~---~~V~sl~~spdg~~L------------~sgs~Dg~I~IwDl~t~~~~~~~---- 308 (713)
.|++|+|||+++++.++++.+|. ..+.+++|+|+++++ ++|+.|++|++||.++++.+..+
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~ 280 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL 280 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence 99999999999999999998654 467888999999876 56788999999999999987765
Q ss_pred -ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE-EEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 309 -HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 309 -~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~-sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
.+|...+.+.+++ +.++++++.|++|+|||+.+++++.++.+|...+. +++|+| ++++|++|+.|++|+|||+
T Consensus 281 p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 281 PPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 3566555555554 88999999999999999999999999999987655 689999 8999999999999999996
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.7e-28 Score=260.33 Aligned_cols=232 Identities=6% Similarity=0.042 Sum_probs=189.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC---------CCeeE
Q 005123 193 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---------RCQEE 263 (713)
Q Consensus 193 ~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~---------~~~~~ 263 (713)
.+..++++|++|+.||.|++||+++++.+..+. ...|.++.|+++ +++++.|++|++|+.. +.+.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344578899999999999999999998877765 567788888877 9999999999999765 44434
Q ss_pred EEEc-cCCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005123 264 RSLT-GHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (713)
Q Consensus 264 ~~l~-~h~~~V~sl~~sp--dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fspdg~~Latgs~Dg~I~Iw 339 (713)
..+. .|...|.+++|++ ++++|++++.|++|++||+++++.+..+. .+...|++++|++++.+|++|+.|+.|+||
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 4443 5668899999999 99999999999999999999998877664 345579999999999999999999999999
Q ss_pred ECCCCeeE-EEeec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe--cccCCCe--EEEEEcCCCcEE
Q 005123 340 DIRAMKEL-ESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTV--WDLAWHPIGYLL 413 (713)
Q Consensus 340 Dl~t~~~l-~~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~--~~h~~~V--~~l~~spdg~~l 413 (713)
|+++++.+ ..+.. |...|++++|++ ++.+|+++++ +.|+|||+++......+. ..|...+ .+++|++++.++
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 275 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM 275 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEE
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEE
Confidence 99999887 78888 999999999999 7899999995 499999998776432221 1233334 369999999888
Q ss_pred EE--e-CCcEEEEecCCCCCc
Q 005123 414 CS--N-DHTTKFWCRNRPGDT 431 (713)
Q Consensus 414 aS--~-Dg~v~iWd~~~~~~~ 431 (713)
++ . |+.|+||+++.....
T Consensus 276 ~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp EEEETTTTEEEEEEECTTTCS
T ss_pred EEecCCCCcEEEEEEcccccc
Confidence 76 6 999999999765543
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.4e-26 Score=252.72 Aligned_cols=242 Identities=9% Similarity=0.104 Sum_probs=211.6
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~ 217 (713)
.+.+|...|++++|+++++++++++.|+.|++||+.+++.+..+..|...+.+++|++++++|++++ .|+.|++||+++
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 3558999999999999999999999999999999999999999999999999999999999886554 799999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEE--------CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE-EEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCS--------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSG 288 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s--------~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L-~sg 288 (713)
++.+..+.. ...+.+++|++++++|++++ .|+.|++||+.+++.+..+. +...+.+++|+++++.| +++
T Consensus 244 ~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 244 KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEE
T ss_pred CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEe
Confidence 988777655 45699999999999999888 58899999999988776653 55689999999999755 566
Q ss_pred eCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC---------------CCeEEEEECCCCeeEEEeecC
Q 005123 289 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---------------DQIIKLYDIRAMKELESFRGH 353 (713)
Q Consensus 289 s~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~---------------Dg~I~IwDl~t~~~l~~~~~h 353 (713)
+.|+.|++||+++++.+..+. +...+.+++|++++++|++++. ||.|++||+.+++.+..+..
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~- 399 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA- 399 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-
T ss_pred cCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-
Confidence 889999999999998887776 6778999999999999998886 57999999999999888875
Q ss_pred CCCeEEEEEeCCCCCEEEEEEC-CCcEEEEEcC
Q 005123 354 RKDVTALAWHPFHEEYFVSGSL-DGSIFHWLVG 385 (713)
Q Consensus 354 ~~~V~sl~fsp~~~~~lasgs~-DG~I~Iwd~~ 385 (713)
...+.+++|++ ++++|++++. |+.|++|+++
T Consensus 400 ~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 400 GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SSSEEEEEECT-TSCEEEEEETTTTEEEEEEET
T ss_pred CCCCceEEEcC-CCCEEEEEECCCCeEEEEEec
Confidence 56799999999 6777777764 9999999985
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=4.4e-26 Score=251.72 Aligned_cols=246 Identities=14% Similarity=0.095 Sum_probs=200.4
Q ss_pred CCEEEEEECC------CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeecc
Q 005123 156 GRRLITGSQS------GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG---AIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 156 g~~Latgs~d------g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG---~I~vwdl~~~~~~~~~~~ 226 (713)
+..|++++.+ +.|++||+.. .....+..|...|.+++|+||+++|++++.++ .|++||+++++... +..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eec
Confidence 5667766654 7999999975 45677888999999999999999999999875 99999999987754 556
Q ss_pred CCCCeeEEEEecCCCEEE-EEECCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECC
Q 005123 227 HKESVRDLSFCRTDLKFC-SCSDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAK 300 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~La-s~s~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg--~I~IwDl~ 300 (713)
+...+.+++|++|+++|+ +++.|+ .|++||+++++. ..+..+...+.+++|+||+++|++++. ++ .|++||+.
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 778999999999999888 566555 499999988765 566778889999999999999998886 44 68888998
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
+++. ..+..+...+.+++|++||++|++++.+ ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++
T Consensus 300 ~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~ 375 (415)
T 2hqs_A 300 GGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQG 375 (415)
T ss_dssp SSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEET
T ss_pred CCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCC
Confidence 8764 4455567789999999999999988764 58999999988764 455454 899999999 788888877776
Q ss_pred ---cEEEEEcCCCCceEEEecccCCCeEEEEEcCCC
Q 005123 378 ---SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 378 ---~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (713)
.|++||+... ....+..|.+.|.+++|+|..
T Consensus 376 ~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 376 MGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp TEEEEEEEETTSC--CEEECCCSSSEEEEEEECCCC
T ss_pred CccEEEEEECCCC--cEEEeeCCCCCCcCCcccccc
Confidence 7999998633 345667789999999999864
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=4.5e-26 Score=241.17 Aligned_cols=197 Identities=12% Similarity=0.092 Sum_probs=158.7
Q ss_pred CCCceEEEEEccC----CCEEEEEE--------------------CCCcEEEEeC-CCCceEEEEeccCCCEEEEEEcc-
Q 005123 143 NRCSINRVLWTPT----GRRLITGS--------------------QSGEFTLWNG-QSFNFEMILQAHDHAIRSMVWSH- 196 (713)
Q Consensus 143 H~~~V~~v~~spd----g~~Latgs--------------------~dg~V~Iwd~-~t~~~~~~l~~h~~~V~sl~~sp- 196 (713)
|...|++|+|++| +.++++++ .|+.|++|++ .+++.+..+..|...++.++|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 4456777777777 66666544 3888999998 55788888888999999999998
Q ss_pred --CCCEEEEEeCCCcEEEEEcCCCceeeeeccCC---CCeeEEEEecCCCEE------------EEEECCCeEEEEEcCC
Q 005123 197 --NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK---ESVRDLSFCRTDLKF------------CSCSDDTTVKVWDFAR 259 (713)
Q Consensus 197 --dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~---~~V~~l~fs~dg~~L------------as~s~Dg~I~iwDl~~ 259 (713)
++++|++++.|++|+|||+++++.+.++..|. ..+.+++|++++.++ ++++.|++|++||..+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 77999999999999999999999999887644 367788999999876 5678899999999999
Q ss_pred CeeEEEE-----ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeE-EEEEcCCCCEEEEEECC
Q 005123 260 CQEERSL-----TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL-CVKWNQNGNWVLTASKD 333 (713)
Q Consensus 260 ~~~~~~l-----~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~-si~fspdg~~Latgs~D 333 (713)
++.+..+ .+|...+.+.+++ +.++++++.|++|+|||+++++++.++.+|...+. +++|+|||++|++|+.|
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D 347 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKD 347 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTT
T ss_pred CEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECC
Confidence 9887665 3566556555555 78999999999999999999999999998887655 68999999999999999
Q ss_pred CeEEEEEC
Q 005123 334 QIIKLYDI 341 (713)
Q Consensus 334 g~I~IwDl 341 (713)
++|+|||+
T Consensus 348 ~TIklWd~ 355 (356)
T 2w18_A 348 GNIFVYHY 355 (356)
T ss_dssp SCEEEEEE
T ss_pred CcEEEecC
Confidence 99999996
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=8.8e-25 Score=249.75 Aligned_cols=280 Identities=11% Similarity=0.101 Sum_probs=226.7
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeC--CCCceEEEEeccCCCEEEEEEcc----CCCEEEEEeC-CCcEEEEEcCCCc
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNG--QSFNFEMILQAHDHAIRSMVWSH----NDNWMVSGDD-GGAIKYWQNNMNN 219 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~--~t~~~~~~l~~h~~~V~sl~~sp----dg~~L~sgs~-DG~I~vwdl~~~~ 219 (713)
+.+++|++||++|++++.|+.|++||+ .+++.+.++. +...+..++|++ |+++|++++. +++|.|||..+.+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 899999999999999999999999999 8888888887 456789999999 9999998884 8999999999998
Q ss_pred eeeeeccC-----------CCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCCeeEE--EEccCCCceEEEEEcCCCCEE
Q 005123 220 VKANKSAH-----------KESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 220 ~~~~~~~~-----------~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~--~l~~h~~~V~sl~~spdg~~L 285 (713)
.+..+..+ ...+.++.+++++.. +++...+++|.+||+.+.+.+. .+. +...+.++.|++++++|
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEE
Confidence 88776542 237889999997765 5566678999999998765433 333 56678899999999987
Q ss_pred EEEe-CCCcEEEEECCCCceEEEEcc----CCCCeEEEEEcCC-CCEEEEEE-CCCeEEEEECCC-------CeeEEEee
Q 005123 286 VSGG-KDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQN-GNWVLTAS-KDQIIKLYDIRA-------MKELESFR 351 (713)
Q Consensus 286 ~sgs-~Dg~I~IwDl~t~~~~~~~~~----h~~~I~si~fspd-g~~Latgs-~Dg~I~IwDl~t-------~~~l~~~~ 351 (713)
++++ .+++|.+||+++++++..+.. |......+ ++++ +.+++++. .|++|.|||+.+ ++++.++.
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence 7655 588999999999998888764 44434333 4676 55566665 589999999998 89999999
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEE-------CCCcEEEEEcCCCCceEEEe--------cccCCCeEEEEEcCCCcEEE-E
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGS-------LDGSIFHWLVGHETPQVEIH--------NVHDNTVWDLAWHPIGYLLC-S 415 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs-------~DG~I~Iwd~~~~~~~~~~~--------~~h~~~V~~l~~spdg~~la-S 415 (713)
.|...+..++|+| ++++|++++ .+++|.|||+.+.+...+.+ ..+...+..++|+++|..+. +
T Consensus 418 ~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 418 GQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp CSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred cCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence 9999999999999 788888877 26799999999887663443 34567899999999996664 2
Q ss_pred ------eCCcEEEEecCCCCC
Q 005123 416 ------NDHTTKFWCRNRPGD 430 (713)
Q Consensus 416 ------~Dg~v~iWd~~~~~~ 430 (713)
.|+.|.|||....+.
T Consensus 497 ~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 497 VWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp EECCTTSCCEEEEEETTTTEE
T ss_pred eecCCCCCCeEEEEECCCceE
Confidence 279999999865543
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=1.3e-25 Score=265.18 Aligned_cols=282 Identities=9% Similarity=0.051 Sum_probs=225.6
Q ss_pred CCceEEEEEccCCCEEEEEEC-CC-----cEEEEeCCCCceEEEEeccCCC------------------------EEEEE
Q 005123 144 RCSINRVLWTPTGRRLITGSQ-SG-----EFTLWNGQSFNFEMILQAHDHA------------------------IRSMV 193 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~-dg-----~V~Iwd~~t~~~~~~l~~h~~~------------------------V~sl~ 193 (713)
...|++++||+||++|++++. |+ .|++||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 8999999999887777655433 78999
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC
Q 005123 194 WSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271 (713)
Q Consensus 194 ~spdg~~L~sgs~DG~I~vwdl~~~~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~ 271 (713)
|++||++|++++. +.|++||+.++. ....+..+...+.+++|++||++|++++. +.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcc
Confidence 9999999999886 999999999883 33445667788999999999999999884 5999999998876654443333
Q ss_pred c----------------eEEEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC-
Q 005123 272 D----------------VKSVDWHPTKSLLVSGGKDS---------------------------------LVKLWDAKS- 301 (713)
Q Consensus 272 ~----------------V~sl~~spdg~~L~sgs~Dg---------------------------------~I~IwDl~t- 301 (713)
. +.+++|+||+++|++++.|+ .|++||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 47899999999999988765 789999998
Q ss_pred CceEEEEc--cCCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCeeEEEeecCCC----CeEEEEEeCCCCCEE
Q 005123 302 GRELCSFH--GHKNMVLCVKWNQNGNWVLTASK-----DQIIKLYDIRAMKELESFRGHRK----DVTALAWHPFHEEYF 370 (713)
Q Consensus 302 ~~~~~~~~--~h~~~I~si~fspdg~~Latgs~-----Dg~I~IwDl~t~~~l~~~~~h~~----~V~sl~fsp~~~~~l 370 (713)
++...... .+...+.+++| +||++|++++. +..|++||+.+++....+..+.. .+.+++|++ +++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~ 351 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD-DGSIL 351 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT-TSCEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC-CCeEE
Confidence 77655433 36778999999 99999997764 56899999999988777765543 456899999 66799
Q ss_pred EEEECCCcEEEEEcCCCCceEEEecccCCCeEEE-EEcCCCcEEE--E-eCC--cEEEEecCCCCC
Q 005123 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGYLLC--S-NDH--TTKFWCRNRPGD 430 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~~la--S-~Dg--~v~iWd~~~~~~ 430 (713)
++++.||.+.||.++.... ...+..+...|.++ .|++++..++ + .|+ .++||+++..+.
T Consensus 352 ~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 352 WSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp EEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred EEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 9999999888888764444 56666677888887 5999996543 3 444 899999976544
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.4e-25 Score=247.62 Aligned_cols=274 Identities=9% Similarity=0.050 Sum_probs=214.9
Q ss_pred CceEEEEEccCCC-EEEEEE----CCC----cEEEEeC--CCCceE--EEEeccCCCEEEEEEcc--------------C
Q 005123 145 CSINRVLWTPTGR-RLITGS----QSG----EFTLWNG--QSFNFE--MILQAHDHAIRSMVWSH--------------N 197 (713)
Q Consensus 145 ~~V~~v~~spdg~-~Latgs----~dg----~V~Iwd~--~t~~~~--~~l~~h~~~V~sl~~sp--------------d 197 (713)
..|...+|+..+. ++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..++++. .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4678888988874 565776 467 8999999 888876 45888888888877764 1
Q ss_pred CCEEEEEeCC------CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC---eEEEEEcCCCeeEEEEcc
Q 005123 198 DNWMVSGDDG------GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT---TVKVWDFARCQEERSLTG 268 (713)
Q Consensus 198 g~~L~sgs~D------G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg---~I~iwDl~~~~~~~~l~~ 268 (713)
+..|+.++.+ +.|++||++... ...+..|...|.+++|++|+++|++++.++ .|++||+++++.. .+..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 5566655544 799999998544 456667889999999999999999999885 9999999988765 4566
Q ss_pred CCCceEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECC
Q 005123 269 HGWDVKSVDWHPTKSLLV-SGGKDSL--VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q--IIKLYDIR 342 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~-sgs~Dg~--I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D-g--~I~IwDl~ 342 (713)
+...+.+++|+||+++|+ +++.|+. |++||+++++. ..+..+...+.+++|++||++|++++.+ + .|++||+.
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 788999999999999888 5665554 99999998765 5666788899999999999999988864 4 68888998
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC---CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eC
Q 005123 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--ND 417 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D---G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~D 417 (713)
+++. ..+..+...+.+++|++ ++++|++++.+ ..|++||+.++.. ..+..+. .+.+++|++|+.+|+. .|
T Consensus 300 ~~~~-~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~l~~~s~~ 374 (415)
T 2hqs_A 300 GGAP-QRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTMVIYSSSQ 374 (415)
T ss_dssp SSCC-EECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSEEEEEEEE
T ss_pred CCCE-EEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCEEEEEEcC
Confidence 8764 44555777899999999 67777777654 5899999977653 3344443 8999999999976643 44
Q ss_pred C---cEEEEecC
Q 005123 418 H---TTKFWCRN 426 (713)
Q Consensus 418 g---~v~iWd~~ 426 (713)
+ .|++|+++
T Consensus 375 ~~~~~l~~~d~~ 386 (415)
T 2hqs_A 375 GMGSVLNLVSTD 386 (415)
T ss_dssp TTEEEEEEEETT
T ss_pred CCccEEEEEECC
Confidence 4 68888775
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.4e-24 Score=248.11 Aligned_cols=277 Identities=12% Similarity=0.058 Sum_probs=227.3
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc--CCCceeeeeccCC
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN--NMNNVKANKSAHK 228 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl--~~~~~~~~~~~~~ 228 (713)
+|++++.++++++.|++|.+||..+++++.++..+.. +.+++|++|+++|++++.|+.|++||+ .+++++..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4889998999999999999999999999999885444 899999999999999999999999999 7888777776 45
Q ss_pred CCeeEEEEec----CCCEEEEEEC-CCeEEEEEcCCCeeEEEEccC-----------CCceEEEEEcCCCC-EEEEEeCC
Q 005123 229 ESVRDLSFCR----TDLKFCSCSD-DTTVKVWDFARCQEERSLTGH-----------GWDVKSVDWHPTKS-LLVSGGKD 291 (713)
Q Consensus 229 ~~V~~l~fs~----dg~~Las~s~-Dg~I~iwDl~~~~~~~~l~~h-----------~~~V~sl~~spdg~-~L~sgs~D 291 (713)
..+..++|++ |+++|++++. +++|.|||..+.+.+..+..+ ...+.++.+++++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 6789999999 9999998884 899999999999888877642 23789999999766 45666778
Q ss_pred CcEEEEECCCCceEE--EEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeec----CCCCeEEEEEeC
Q 005123 292 SLVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG----HRKDVTALAWHP 364 (713)
Q Consensus 292 g~I~IwDl~t~~~~~--~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~----h~~~V~sl~fsp 364 (713)
+.|.+||+.+.+.+. .+. +...+.++.|+++|++|++++ .+++|.+||+++++++..+.. |......+ +++
T Consensus 302 g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred CeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 999999998876544 343 566788999999999887665 588999999999999888874 55444443 467
Q ss_pred CCCCEEEEEE-CCCcEEEEEcCCC------CceEEEecccCCCeEEEEEcCCCcEEEE-e--------CCcEEEEecCCC
Q 005123 365 FHEEYFVSGS-LDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPIGYLLCS-N--------DHTTKFWCRNRP 428 (713)
Q Consensus 365 ~~~~~lasgs-~DG~I~Iwd~~~~------~~~~~~~~~h~~~V~~l~~spdg~~laS-~--------Dg~v~iWd~~~~ 428 (713)
+++.+++++. .|++|.|||+.+. .+.+..+..|...+..|+++|++..|.+ . +++|.|||++..
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 4577777776 6899999999772 4566777778888999999999988876 3 679999999876
Q ss_pred CCc
Q 005123 429 GDT 431 (713)
Q Consensus 429 ~~~ 431 (713)
+..
T Consensus 460 ~~~ 462 (543)
T 1nir_A 460 DAK 462 (543)
T ss_dssp TSC
T ss_pred CCC
Confidence 543
No 132
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=1.1e-24 Score=255.99 Aligned_cols=277 Identities=11% Similarity=0.105 Sum_probs=210.5
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-----C
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-----N 218 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~-----~ 218 (713)
...|.+++|++| ++|+++. ++.|++||+.+++.. .+..+...+.+++|+|||++|+++ .|+.|++||+.+ +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 357999999999 6666664 599999999987654 445567788999999999999985 579999999998 7
Q ss_pred ceeeeeccCCCC--------------eeEEEEecCCCEEEEEE---------------------------------CCCe
Q 005123 219 NVKANKSAHKES--------------VRDLSFCRTDLKFCSCS---------------------------------DDTT 251 (713)
Q Consensus 219 ~~~~~~~~~~~~--------------V~~l~fs~dg~~Las~s---------------------------------~Dg~ 251 (713)
+.......+... +.+++|++|+++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 665544443333 48999999999999987 4468
Q ss_pred EEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEc--cCCC---CeEEEE
Q 005123 252 VKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDS-----LVKLWDAKSGRELCSFH--GHKN---MVLCVK 319 (713)
Q Consensus 252 I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~Dg-----~I~IwDl~t~~~~~~~~--~h~~---~I~si~ 319 (713)
|++||+.+++...... .+...+.+++|++|+++|++++.|+ .|++||+.+++....+. .+.. .+.+++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999887654432 4567799999999999999988775 89999999984443332 1222 246789
Q ss_pred EcC--CCCEEEEEECCCeEEEEECC-CCeeEEEeecCCCCeEE-EEEeCCCCCEE-EEEECCC----cEEEEEcCCCCce
Q 005123 320 WNQ--NGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTA-LAWHPFHEEYF-VSGSLDG----SIFHWLVGHETPQ 390 (713)
Q Consensus 320 fsp--dg~~Latgs~Dg~I~IwDl~-t~~~l~~~~~h~~~V~s-l~fsp~~~~~l-asgs~DG----~I~Iwd~~~~~~~ 390 (713)
|++ ||++|++++.|+.++||+++ +++.+..+..+...+.+ ++|++ +++.| ++++.++ .|+.||+.++.
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-- 393 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-- 393 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC--
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC--
Confidence 999 99999999999999999886 67777888878878877 79999 55554 5555555 56666765543
Q ss_pred EEEecccCCCeEEEEEcCCCcEEEE--eC----CcEEEEecCCC
Q 005123 391 VEIHNVHDNTVWDLAWHPIGYLLCS--ND----HTTKFWCRNRP 428 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~spdg~~laS--~D----g~v~iWd~~~~ 428 (713)
...+. +...+.+++|++|+.+++. .+ +.|++||++..
T Consensus 394 ~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 394 TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 23332 5677999999999976643 22 56999998654
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=1.7e-23 Score=222.78 Aligned_cols=264 Identities=10% Similarity=0.068 Sum_probs=215.0
Q ss_pred CCceEEEEEccCCCEEEEEEC-------CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEc
Q 005123 144 RCSINRVLWTPTGRRLITGSQ-------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQN 215 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~-------dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~DG~I~vwdl 215 (713)
...+..++|++++++|++++. ++.|.+||..+++.+..+.. ...+.+++|++++++++++ ..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 356889999999999998874 56899999999998888765 3457889999999966655 55799999999
Q ss_pred CCCceeeeeccCCCC---------eeEEEEecCCCEEEEEE--CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCE
Q 005123 216 NMNNVKANKSAHKES---------VRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~---------V~~l~fs~dg~~Las~s--~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~ 284 (713)
.+++.+..+..+... +.+++|+++++++++++ .++.|.+||+++++.+..+..+...+.+++|++++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 999887776554322 78899999999888776 4789999999999988888766667899999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEcc----CCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKD-QIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~----h~~~I~si~fspdg~~Latgs~D-g~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
|++++.++.|.+||+.+++.+..+.. +...+.+++|++++++|++++.+ +.|.+||+.+++.+..+.... ...
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~ 276 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLA 276 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cce
Confidence 99999999999999999988877754 45568899999999988877654 899999999999888777544 257
Q ss_pred EEEeCCCCC-EEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE
Q 005123 360 LAWHPFHEE-YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 360 l~fsp~~~~-~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 413 (713)
++|++ +++ ++++...++.|.+||+.+.+....+. ....+.+++|++++.++
T Consensus 277 ~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l 328 (353)
T 3vgz_A 277 VLFNP-ARNEAYVTHRQAGKVSVIDAKSYKVVKTFD--TPTHPNSLALSADGKTL 328 (353)
T ss_dssp EEEET-TTTEEEEEETTTTEEEEEETTTTEEEEEEE--CCSEEEEEEECTTSCEE
T ss_pred EEECC-CCCEEEEEECCCCeEEEEECCCCeEEEEEe--cCCCCCeEEEcCCCCEE
Confidence 99999 555 55555579999999997766444333 24578999999999744
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.2e-24 Score=256.74 Aligned_cols=277 Identities=12% Similarity=0.077 Sum_probs=214.0
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
..|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++. +.|++||+.+++...
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQ 186 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEE
Confidence 45889999999999999986 899999999873 44556778889999999999999998874 689999999887665
Q ss_pred eeccCCCC----------------eeEEEEecCCCEEEEEECCC---------------------------------eEE
Q 005123 223 NKSAHKES----------------VRDLSFCRTDLKFCSCSDDT---------------------------------TVK 253 (713)
Q Consensus 223 ~~~~~~~~----------------V~~l~fs~dg~~Las~s~Dg---------------------------------~I~ 253 (713)
....+... +.+++|++|+++|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 54443332 47899999999999987765 889
Q ss_pred EEEcCC-CeeEEEEc--cCCCceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceEEEEccCCC----CeEEEEEc
Q 005123 254 VWDFAR-CQEERSLT--GHGWDVKSVDWHPTKSLLVSGGK-----DSLVKLWDAKSGRELCSFHGHKN----MVLCVKWN 321 (713)
Q Consensus 254 iwDl~~-~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~-----Dg~I~IwDl~t~~~~~~~~~h~~----~I~si~fs 321 (713)
+||+.+ ++...... .+...+.+++| +|+++|++++. +..|++||+.+++....+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 76554433 36778999999 99999987764 56799999999987776654443 45689999
Q ss_pred CCCCEEEEEECCCeEEEEECC-CCeeEEEeecCCCCeEEE-EEeCCCCCEEEEEECCC--cEEEEEcCCCCceEEEeccc
Q 005123 322 QNGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTAL-AWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVH 397 (713)
Q Consensus 322 pdg~~Latgs~Dg~I~IwDl~-t~~~l~~~~~h~~~V~sl-~fsp~~~~~lasgs~DG--~I~Iwd~~~~~~~~~~~~~h 397 (713)
+||++|++++.|+.++||.++ +++ +..+..+...|..+ .|++++..++++++.++ .++||+++........+..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 999988899999987887765 345 77787788888887 59994334445666666 8999998654433344433
Q ss_pred CCCeEEEEEcCCCcEEEE---eC---CcEEEEecC
Q 005123 398 DNTVWDLAWHPIGYLLCS---ND---HTTKFWCRN 426 (713)
Q Consensus 398 ~~~V~~l~~spdg~~laS---~D---g~v~iWd~~ 426 (713)
...+.+++|++|+..++. .. ..+.+|+.+
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 667899999999976653 22 457777653
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=1.1e-23 Score=222.84 Aligned_cols=275 Identities=8% Similarity=0.085 Sum_probs=204.3
Q ss_pred EEEccCCCE-EEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCCCce-eeeecc
Q 005123 150 VLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNNV-KANKSA 226 (713)
Q Consensus 150 v~~spdg~~-Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl~~~~~-~~~~~~ 226 (713)
..|..++++ +++++.++.|++||..+++.+..+..+...+ +++|++++++|++++. ++.|.+||+.+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345666655 5677788999999999999988888777777 9999999997776665 88999999999887 666666
Q ss_pred CCCCeeEEEEecCCCEEEEEECCC---eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-eCCCc-EEEEECCC
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDT---TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSL-VKLWDAKS 301 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg---~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~-I~IwDl~t 301 (713)
+...+.+++|++++++|+++..++ .|++||+.+++.+..+.. .....+++|++++++|+++ ..++. |.+||++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 655555599999999999655553 899999999988877764 4567999999999855554 55588 99999986
Q ss_pred CceEE----EEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCee---EEEeecCCCCeEEEEEeCCCCCEEE-E
Q 005123 302 GRELC----SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE---LESFRGHRKDVTALAWHPFHEEYFV-S 372 (713)
Q Consensus 302 ~~~~~----~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~---l~~~~~h~~~V~sl~fsp~~~~~la-s 372 (713)
...+. ..........+++|+++|++|++++ .++.|++||+++++. +..+.. ...+..++|++ ++++|+ +
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~v~ 238 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSR-DGSTVYVL 238 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECT-TSSEEEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECC-CCCEEEEE
Confidence 44331 2223455689999999999776655 688999999998887 777764 46678999999 666554 4
Q ss_pred EECCCcEEEEEcCCCCce--EEEecc---cC---CCeEEEEEcCCCcEE-E-E-eCCcEEEEecCCC
Q 005123 373 GSLDGSIFHWLVGHETPQ--VEIHNV---HD---NTVWDLAWHPIGYLL-C-S-NDHTTKFWCRNRP 428 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~--~~~~~~---h~---~~V~~l~~spdg~~l-a-S-~Dg~v~iWd~~~~ 428 (713)
...++.|.+||+.+++.. ..+... +. ..+.+++|++|+..+ + + .++.|+||+++..
T Consensus 239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 455788999999776531 111111 11 123568999999755 3 3 5679999998654
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.9e-23 Score=220.88 Aligned_cols=268 Identities=10% Similarity=0.087 Sum_probs=191.5
Q ss_pred EEE-EEECCCcEEEEeCC-CCce-EEEEeccCCCEEEEEEccCCCEEEEEeCC-CcEEEEEcC--CCce--eeeeccCCC
Q 005123 158 RLI-TGSQSGEFTLWNGQ-SFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDG-GAIKYWQNN--MNNV--KANKSAHKE 229 (713)
Q Consensus 158 ~La-tgs~dg~V~Iwd~~-t~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~D-G~I~vwdl~--~~~~--~~~~~~~~~ 229 (713)
+|+ +++.|+.|++||+. +++. ......+...+.+++|++++++|++++.+ +.|++|+++ +++. +..+... .
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~ 84 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-G 84 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-S
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-C
Confidence 444 44679999999985 3322 22223467789999999999999988876 999999998 5543 3333333 3
Q ss_pred CeeEEEEecCCCEEEEEEC-CCeEEEEEcC---CCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cc
Q 005123 230 SVRDLSFCRTDLKFCSCSD-DTTVKVWDFA---RCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKS-GR 303 (713)
Q Consensus 230 ~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~---~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t-~~ 303 (713)
.+.+++|++++++|++++. ++.|++||+. ..+.+..+. ....+.+++|++++++|++++ .++.|++||+++ ++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 8899999999998877765 8899999994 333444444 344689999999999888887 889999999987 54
Q ss_pred eEE----EEcc-CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC--Cee--EEEee---cC---CCCeEEEEEeCCCC
Q 005123 304 ELC----SFHG-HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA--MKE--LESFR---GH---RKDVTALAWHPFHE 367 (713)
Q Consensus 304 ~~~----~~~~-h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t--~~~--l~~~~---~h---~~~V~sl~fsp~~~ 367 (713)
... .+.. ....+.+++|++++++|++++ .++.|++||++. ++. +..+. .. ...+..++|++ ++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg 242 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DG 242 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CC
Confidence 432 2222 345788999999999877665 789999999953 332 22222 11 23577899999 55
Q ss_pred CEEE-EEECCCcEEEEEcCCCC---ceEEEecccCCCeEEEEEcCCCcEEE-E--eCCcEEEEecCCCC
Q 005123 368 EYFV-SGSLDGSIFHWLVGHET---PQVEIHNVHDNTVWDLAWHPIGYLLC-S--NDHTTKFWCRNRPG 429 (713)
Q Consensus 368 ~~la-sgs~DG~I~Iwd~~~~~---~~~~~~~~h~~~V~~l~~spdg~~la-S--~Dg~v~iWd~~~~~ 429 (713)
++|+ ++..++.|++||++... ..+.....+. .+.+++|++++.+++ + .|+.|.||+++...
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 5555 56679999999997322 2222233333 489999999997553 3 57999999886544
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1e-24 Score=256.53 Aligned_cols=283 Identities=11% Similarity=0.110 Sum_probs=210.6
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCC---CEEEEEEccCCCEEEEEeCC---------CcEEEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH---AIRSMVWSHNDNWMVSGDDG---------GAIKYW 213 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~---~V~sl~~spdg~~L~sgs~D---------G~I~vw 213 (713)
.+.+++|++||+++++ +.||.|++||..+++....+..|.. .|.+++|||||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999997766 7899999999999988888877765 49999999999999998764 788899
Q ss_pred EcCCCceeee--eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc------------------e
Q 005123 214 QNNMNNVKAN--KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD------------------V 273 (713)
Q Consensus 214 dl~~~~~~~~--~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~------------------V 273 (713)
|+++++.... ...+...+..++|++||++|+.++. +.|++||+.+++.......+... +
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 9998876222 2234445899999999999999886 79999999988776665543333 3
Q ss_pred EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCceEEEEccC------CC
Q 005123 274 KSVDWHPTKSLLVSGGKDS----------------------------------LVKLWDAKSGRELCSFHGH------KN 313 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg----------------------------------~I~IwDl~t~~~~~~~~~h------~~ 313 (713)
.+++|+||+++|++++.|+ .|++||+.+++....+..+ ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 7899999999999987653 7999999988865666543 56
Q ss_pred CeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCeeEEEeec-CCCCe----EEEEEeCCCCCEEEE-EECCC------
Q 005123 314 MVLCVKWNQNGNWVLTASK----DQIIKLYDIRAMKELESFRG-HRKDV----TALAWHPFHEEYFVS-GSLDG------ 377 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~----Dg~I~IwDl~t~~~l~~~~~-h~~~V----~sl~fsp~~~~~las-gs~DG------ 377 (713)
.+.+++||+||++|++.+. +..|++||+.+++....+.. +...+ ..++|+|++..++++ +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 7899999999998877653 35799999999887766543 33433 378999954444444 56677
Q ss_pred cEEEEEcCCCCc--eEEEecccCCCeEE-EEEcCCCcEEE--E-eC--CcEEEEecCCCCC
Q 005123 378 SIFHWLVGHETP--QVEIHNVHDNTVWD-LAWHPIGYLLC--S-ND--HTTKFWCRNRPGD 430 (713)
Q Consensus 378 ~I~Iwd~~~~~~--~~~~~~~h~~~V~~-l~~spdg~~la--S-~D--g~v~iWd~~~~~~ 430 (713)
.|++||+..... ....+..+...+.. ++|++|+..|+ + .| +.++||+++..+.
T Consensus 336 ~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred EEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 466676323332 02223223344554 69999997764 3 33 7899999986543
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=5.5e-24 Score=250.26 Aligned_cols=267 Identities=12% Similarity=0.082 Sum_probs=196.9
Q ss_pred ceEEEEEccCCCEEEEEECC---------CcEEEEeCCCCceEEEEe---ccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 146 SINRVLWTPTGRRLITGSQS---------GEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~d---------g~V~Iwd~~t~~~~~~l~---~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
.|.+++|||||++|++++.+ +.|+|||+.+++. ..+. .|...+.+++|||||++|++++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 48999999999999999874 7788999998876 3343 34445889999999999999886 799999
Q ss_pred EcCCCceeeeeccCCCCe------------------eEEEEecCCCEEEEEECCC-------------------------
Q 005123 214 QNNMNNVKANKSAHKESV------------------RDLSFCRTDLKFCSCSDDT------------------------- 250 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V------------------~~l~fs~dg~~Las~s~Dg------------------------- 250 (713)
|+.+++.......+...+ .+++|++|+++|++++.|+
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 999887766555444333 7899999999999887553
Q ss_pred ---------eEEEEEcCCCeeEEEEccC------CCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCceEEEEcc-
Q 005123 251 ---------TVKVWDFARCQEERSLTGH------GWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGRELCSFHG- 310 (713)
Q Consensus 251 ---------~I~iwDl~~~~~~~~l~~h------~~~V~sl~~spdg~~L~sgs~----Dg~I~IwDl~t~~~~~~~~~- 310 (713)
+|++||+.+++....+..+ ...+.+++|+||+++|++.+. +..|++||+.+++....+..
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 7999999888765566543 567899999999998877653 35799999999887766543
Q ss_pred CCCCe----EEEEEcCCCCEEEE--EECCC------eEEEEE-CCCCe--eEEEeecCCCCeEE-EEEeCCCCCEEEEEE
Q 005123 311 HKNMV----LCVKWNQNGNWVLT--ASKDQ------IIKLYD-IRAMK--ELESFRGHRKDVTA-LAWHPFHEEYFVSGS 374 (713)
Q Consensus 311 h~~~I----~si~fspdg~~Lat--gs~Dg------~I~IwD-l~t~~--~l~~~~~h~~~V~s-l~fsp~~~~~lasgs 374 (713)
+...+ ..++|++||++|++ +..++ .|++|| ..+++ ++..+..+...+.. ++|++ +++.|+..+
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~ 378 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-KGNKIYFLS 378 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET-TTTEEEEEE
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC-CCCEEEEEE
Confidence 33444 37899999997775 44666 577777 34444 14445444444554 69999 666666555
Q ss_pred CC---CcEEEEEcCCCCc-eEEEecc---cCCCeEEEEEcCCCcEEEE
Q 005123 375 LD---GSIFHWLVGHETP-QVEIHNV---HDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 375 ~D---G~I~Iwd~~~~~~-~~~~~~~---h~~~V~~l~~spdg~~laS 415 (713)
.+ +.++||+++.... ....+.. |...+..++|++|+..++.
T Consensus 379 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 379 TEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp SSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred cCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence 44 7899999865432 2222322 5677899999999977653
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.1e-23 Score=216.64 Aligned_cols=249 Identities=10% Similarity=0.114 Sum_probs=194.3
Q ss_pred EECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeccC-CCCeeEEEEecC
Q 005123 162 GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAH-KESVRDLSFCRT 239 (713)
Q Consensus 162 gs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~-~~~~~~~~~~-~~~V~~l~fs~d 239 (713)
++.|+.|++||+.+++.. .+..|...|.+++|++++++|++++ ++.|++||+++ ++.......+ ...|.+++|+++
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 456889999999988766 4556899999999999999999987 78999999999 7776665555 367899999999
Q ss_pred CCEEEEEEC--CCeEEE--EEcCCCeeEEEEccCCCceEEEEEcCCCCEEE-EEeCCCcEEEEECCC-CceEEEEccCCC
Q 005123 240 DLKFCSCSD--DTTVKV--WDFARCQEERSLTGHGWDVKSVDWHPTKSLLV-SGGKDSLVKLWDAKS-GRELCSFHGHKN 313 (713)
Q Consensus 240 g~~Las~s~--Dg~I~i--wDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~Dg~I~IwDl~t-~~~~~~~~~h~~ 313 (713)
+++|++++. ++.++| ||+.+++ ...+..+ ..+.+++|++++++|+ +++.|+.++||+++. ......+..+..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 999999983 344455 4555544 3444433 3589999999999877 677899999998632 334456666788
Q ss_pred CeEEEEEcCCCCEEEEEE-CCCeEEEEECC-CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC-----------CcEE
Q 005123 314 MVLCVKWNQNGNWVLTAS-KDQIIKLYDIR-AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD-----------GSIF 380 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs-~Dg~I~IwDl~-t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D-----------G~I~ 380 (713)
.+.+++|++++++|++++ .++.++||+++ .+..+..+..|...+.+++|++ ++++|++++.+ +.|+
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEE
Confidence 899999999999888776 58899999986 5666777877888899999999 77887777765 5699
Q ss_pred EEEcCCCCce-EEEecccCCCeEEEEEcCCCcEEEE
Q 005123 381 HWLVGHETPQ-VEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 381 Iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
+||+.++... +.....|...|.+++|++++..|+.
T Consensus 253 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 288 (297)
T 2ojh_A 253 LMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAY 288 (297)
T ss_dssp EEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEE
T ss_pred EEecCCCCceeeeccCCCCcccccceECCCCCEEEE
Confidence 9999776543 2223367788999999999976643
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.7e-23 Score=215.31 Aligned_cols=231 Identities=13% Similarity=0.135 Sum_probs=182.6
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC-CceEEEEecc-CCCEEEEEEccCCCEEEEEe--CCCcEEEEE--c
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAH-DHAIRSMVWSHNDNWMVSGD--DGGAIKYWQ--N 215 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h-~~~V~sl~~spdg~~L~sgs--~DG~I~vwd--l 215 (713)
.|...|.+++|++|+++|++++ ++.|++||+.+ ++....+..+ ...|.+++|++++++|++++ .++.+.||. +
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 4678899999999999999987 78999999999 8777666665 36789999999999999998 334555555 4
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEE-EEECCCeEEEEEcCC-CeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCC
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDS 292 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~La-s~s~Dg~I~iwDl~~-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg 292 (713)
.++.. ..+. ....+..++|++++++|+ +++.|+.++||+++. ......+..+...+.+++|++++++|++++ .++
T Consensus 118 ~~~~~-~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 195 (297)
T 2ojh_A 118 TGGTP-RLMT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 195 (297)
T ss_dssp TCCCC-EECC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTS
T ss_pred CCCce-EEee-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCC
Confidence 45443 2333 333589999999999877 777899999998632 234456666778899999999999888776 589
Q ss_pred cEEEEECC-CCceEEEEccCCCCeEEEEEcCCCCEEEEEECC-----------CeEEEEECCCCee--EEEeecCCCCeE
Q 005123 293 LVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-----------QIIKLYDIRAMKE--LESFRGHRKDVT 358 (713)
Q Consensus 293 ~I~IwDl~-t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D-----------g~I~IwDl~t~~~--l~~~~~h~~~V~ 358 (713)
.++||+++ .+..+..+..+...+.+++|++++++|++++.+ +.|++||+.+++. +..+..|...|.
T Consensus 196 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 275 (297)
T 2ojh_A 196 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMN 275 (297)
T ss_dssp SCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSC
T ss_pred CccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccc
Confidence 99999886 566677777778889999999999999988765 5699999998765 444557888999
Q ss_pred EEEEeCCCCCEEEEEECC
Q 005123 359 ALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~D 376 (713)
+++|++ ++++|++++.|
T Consensus 276 ~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 276 SPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp SCCBCT-TSSEEEEEEEC
T ss_pred cceECC-CCCEEEEEEec
Confidence 999999 67777666654
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=1.8e-22 Score=212.76 Aligned_cols=266 Identities=6% Similarity=0.002 Sum_probs=205.8
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCC--CEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccC-----C
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDH--AIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAH-----K 228 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~--~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~-----~ 228 (713)
++|++++.++.|++||..+++.+..+..... .+.+++|++++++|+ ++..++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988887764332 588999999998765 4556789999999998877655432 2
Q ss_pred CCeeEEEEecCCCEEEEEE------------CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 229 ESVRDLSFCRTDLKFCSCS------------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s------------~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
..+.+++|++++++|++++ .++.|++||+.+++.+..+.. ...+.+++|++++++|+++ ++.|++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2678899999999998886 579999999999888777764 5568899999999988887 688999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC------------------------eEEEEECCCCeeE-EEee
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ------------------------IIKLYDIRAMKEL-ESFR 351 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg------------------------~I~IwDl~t~~~l-~~~~ 351 (713)
||+++++.+..+..... ...+.|++++++|++.+.++ .|.+||+++++.. ..+.
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 99999988877764431 11337889888776544332 4789999988764 3344
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-E-eCCcEEEEecCCCC
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-S-NDHTTKFWCRNRPG 429 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S-~Dg~v~iWd~~~~~ 429 (713)
.+...+.+++|++ ++++|+++ ++.|++||+.+.+....+. ....+.+++|++++.+++ + .|+.|++||++...
T Consensus 238 ~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 238 IMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceec--CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 5667789999999 67777777 7899999997765443333 235688999999997553 3 88999999987654
Q ss_pred Cc
Q 005123 430 DT 431 (713)
Q Consensus 430 ~~ 431 (713)
..
T Consensus 313 ~~ 314 (337)
T 1pby_B 313 KK 314 (337)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.5e-22 Score=213.87 Aligned_cols=263 Identities=9% Similarity=0.108 Sum_probs=189.2
Q ss_pred CCCceEEEEEccCCCEEEEEECC-CcEEEEeCC--CCce--EEEEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQS-GEFTLWNGQ--SFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNN 216 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~d-g~V~Iwd~~--t~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl~ 216 (713)
|...+.+++|++++++|++++.+ +.|++|++. +++. +..+..+. .+.+++|++++++|++++. ++.|.+||++
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 56678899999999999999887 999999987 5543 34444433 8899999999998877765 7899999994
Q ss_pred ---CCceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCC-CeeEE----EEcc-CCCceEEEEEcCCCCEEE
Q 005123 217 ---MNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR-CQEER----SLTG-HGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 217 ---~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~-~~~~~----~l~~-h~~~V~sl~~spdg~~L~ 286 (713)
..+....+. ....+.+++|++++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|++++++|+
T Consensus 115 ~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~ 193 (343)
T 1ri6_A 115 DGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 193 (343)
T ss_dssp TTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence 333444433 345689999999999888887 899999999987 54432 2222 345788999999999776
Q ss_pred EEe-CCCcEEEEECCC--Cce--EEEEcc------CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC----CCeeEEEe
Q 005123 287 SGG-KDSLVKLWDAKS--GRE--LCSFHG------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIR----AMKELESF 350 (713)
Q Consensus 287 sgs-~Dg~I~IwDl~t--~~~--~~~~~~------h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~----t~~~l~~~ 350 (713)
+++ .++.|.+||++. ++. +..+.. ....+.+++|++++++|+++. .++.|++||++ +.+.+..+
T Consensus 194 ~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 194 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred EEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence 655 789999999953 432 222221 123577899999999888555 78999999998 34555556
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCce---EEEecccCCCeEEEEEcCCC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQ---VEIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg 410 (713)
..+.. +.+++|++ ++++|++++ .++.|.+|+++..... +..+.. .....+++|.++.
T Consensus 274 ~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 274 PTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE 334 (343)
T ss_dssp ECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred cCCCc-cceEEECC-CCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence 55544 89999999 677676666 6899999976533221 111211 2446667776654
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=1.9e-23 Score=240.15 Aligned_cols=270 Identities=11% Similarity=0.023 Sum_probs=202.0
Q ss_pred CCceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEEEEeC---CCcEEEEEcCC-
Q 005123 144 RCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNM- 217 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs~---DG~I~vwdl~~- 217 (713)
...|++++|++||++||+++. ||+++||++.+++. ..+..+. ..|.+++|++| +++++++. +....||.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 346999999999999999887 99999999866554 4555555 68999999999 77777775 45566665543
Q ss_pred -CceeeeeccCCCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC----
Q 005123 218 -NNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---- 291 (713)
Q Consensus 218 -~~~~~~~~~~~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---- 291 (713)
......+.. ...+...+|++|++. +++++.++.+.+||+.+++.......+. .+++|+|||++|++++.|
T Consensus 99 ~~g~~~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 99 RPGEEQRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp STTCCEECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred CCCccccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence 221123322 223456788888854 3444445556699999887665554333 899999999999988877
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeeEEEeecCCCCeEEEE--------
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ--IIKLYDIRAMKELESFRGHRKDVTALA-------- 361 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg--~I~IwDl~t~~~l~~~~~h~~~V~sl~-------- 361 (713)
..|++||+.+++.. .+..+...+.+++|||||++|+++..++ .|++||+.+++.. .+..|...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLG 252 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccccee
Confidence 78999999988755 5677888899999999999999888888 8999999998877 7777877777777
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCC-cEEEEecCCCC
Q 005123 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDH-TTKFWCRNRPG 429 (713)
Q Consensus 362 fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg-~v~iWd~~~~~ 429 (713)
|++ ++.++++++.|++++||++ ++ ... ...+.|.+++|+ ++.++++ .+. .-++|.++..+
T Consensus 253 ~sp-dg~~~~~~~~~g~~~l~~~--g~-~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 253 YLP-DGRLAVVARREGRSAVFID--GE-RVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp ECT-TSCEEEEEEETTEEEEEET--TE-EEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EcC-CCcEEEEEEcCCcEEEEEE--CC-eec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999 5599999999999999999 32 221 345678999999 8876654 443 34555554433
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=1.6e-21 Score=206.15 Aligned_cols=241 Identities=8% Similarity=0.075 Sum_probs=183.1
Q ss_pred CCCceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCce-EEEEeccCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGG---AIKYWQNNM 217 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~DG---~I~vwdl~~ 217 (713)
+...+ +++|++|+++|++++. ++.|++||..+++. ...+..+...+.+++|++++++|+++..++ .|.+||+++
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK 117 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence 34456 9999999998877766 88999999999887 777777766666699999999999655553 899999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEE-ECCCe-EEEEEcCCCeeE----EEEccCCCceEEEEEcCCCCEEEEEe-C
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTT-VKVWDFARCQEE----RSLTGHGWDVKSVDWHPTKSLLVSGG-K 290 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~-s~Dg~-I~iwDl~~~~~~----~~l~~h~~~V~sl~~spdg~~L~sgs-~ 290 (713)
++.+..+.. .....+++|++++++|+++ ..++. |++|++.....+ .........+.+++|++++++|++++ .
T Consensus 118 ~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 196 (331)
T 3u4y_A 118 NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI 196 (331)
T ss_dssp TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC
Confidence 988776644 4567999999999865555 55578 999998754332 12223456689999999999665554 6
Q ss_pred CCcEEEEECCCCce---EEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCee--EEEeecC----CC---Ce
Q 005123 291 DSLVKLWDAKSGRE---LCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE--LESFRGH----RK---DV 357 (713)
Q Consensus 291 Dg~I~IwDl~t~~~---~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~--l~~~~~h----~~---~V 357 (713)
++.|++||+++++. +..+.. ...+..++|++||++|++++ .++.|.+||+.+++. +..+..+ .. .+
T Consensus 197 ~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 197 GNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA 275 (331)
T ss_dssp TTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC
T ss_pred CCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccc
Confidence 88999999999888 777763 46688999999999877665 477899999998877 4443322 22 23
Q ss_pred EEEEEeCCCCCEE-EEEECCCcEEEEEcCCC
Q 005123 358 TALAWHPFHEEYF-VSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 358 ~sl~fsp~~~~~l-asgs~DG~I~Iwd~~~~ 387 (713)
..++|++ ++++| +++..++.|.|||+...
T Consensus 276 ~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 276 NQMALNK-TETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CCEEECT-TSSEEEEEETTTTEEEEEETTSC
T ss_pred cceEECC-CCCEEEEecCCCCcEEEEEecCC
Confidence 5689999 56655 55555779999999654
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=4.4e-22 Score=244.63 Aligned_cols=276 Identities=8% Similarity=-0.018 Sum_probs=223.3
Q ss_pred CCCceEEEEEc-cCCCEEEEEECCCcEEEEeCCCCceEEEEeccCC-CEEEEEEccCCCEEEEEeCCCcEE-EEEcCCCc
Q 005123 143 NRCSINRVLWT-PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIK-YWQNNMNN 219 (713)
Q Consensus 143 H~~~V~~v~~s-pdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~-~V~sl~~spdg~~L~sgs~DG~I~-vwdl~~~~ 219 (713)
|...|.+++|+ |||++|++++ ++.|++|+..+++.. .+..|.. .+.+++|+ |++.|++++.++.|. +||+.+++
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence 34579999999 9999999888 789999999887644 4666777 89999999 999999998888888 99998877
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC-------
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS------- 292 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg------- 292 (713)
..... .+...+.+++|++|+++|++++.++.|++||+.+++....+..|...+.+++|+||+++|++++.++
T Consensus 371 ~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~ 449 (1045)
T 1k32_A 371 AEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 449 (1045)
T ss_dssp EEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred ceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence 65544 7778999999999999999999999999999999988877778888999999999999999887654
Q ss_pred ---cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee-----------------------
Q 005123 293 ---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE----------------------- 346 (713)
Q Consensus 293 ---~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~----------------------- 346 (713)
.|++||+.+++ +..+..+...+.+++|++||++|++++.++...+|+......
T Consensus 450 ~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1045)
T 1k32_A 450 VMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 528 (1045)
T ss_dssp CEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGC
T ss_pred CCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCcccc
Confidence 89999999877 667777888899999999999999999887777776432211
Q ss_pred --------------------EEEeecCCCCeEEEEEeCCCCCEEEE-------------EECCCcEEEEEcCCCCceEEE
Q 005123 347 --------------------LESFRGHRKDVTALAWHPFHEEYFVS-------------GSLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 347 --------------------l~~~~~h~~~V~sl~fsp~~~~~las-------------gs~DG~I~Iwd~~~~~~~~~~ 393 (713)
+..+..|...+..+++++ ++.++++ ...+..|++||+.++.. ..
T Consensus 529 ~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~-dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~--~~ 605 (1045)
T 1k32_A 529 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV--TE 605 (1045)
T ss_dssp CCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE--EE
T ss_pred CcCccccccccccccCHhHceEEcCCCCCChhheEEcC-CCeEEEEecccCcccccccccCCCceEEEEECCCCcE--EE
Confidence 123334567789999999 6676664 12345688888876653 22
Q ss_pred ecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCC
Q 005123 394 HNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 394 ~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~ 429 (713)
+. ..+.+++|++||..|++ .++.|++|+++...
T Consensus 606 l~---~~v~~~~~S~DG~~l~~~~~~~i~~~d~~~~~ 639 (1045)
T 1k32_A 606 VK---NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 639 (1045)
T ss_dssp EE---EEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred ee---cCcceEEECCCCCEEEEEcCCcEEEEeCccCc
Confidence 22 56889999999977765 66799999997765
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=3.4e-22 Score=245.71 Aligned_cols=278 Identities=11% Similarity=0.053 Sum_probs=224.6
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC-CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..+.+|...|.+++|+++ .++++++.|+.+.||++.. +.....+..|. .+.+++|++||++|+++. ++.|.+||+.
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~ 273 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPD 273 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTT
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCC
Confidence 345789999999999988 6667778889999997543 33445555554 466789999999998875 8999999995
Q ss_pred CCceeeeecc-----------CCCCeeEEEEe-cCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC-ceEEEEEcCCCC
Q 005123 217 MNNVKANKSA-----------HKESVRDLSFC-RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVKSVDWHPTKS 283 (713)
Q Consensus 217 ~~~~~~~~~~-----------~~~~V~~l~fs-~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~-~V~sl~~spdg~ 283 (713)
...+. .+.. +...+.+++|+ +|+++|++++ ++.|++||+.+++.. .+..+.. .+.+++|+ |++
T Consensus 274 ~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 274 TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKV 349 (1045)
T ss_dssp TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEE
T ss_pred ceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCC
Confidence 54443 4333 33468999999 9999999888 789999999877644 4556666 89999999 999
Q ss_pred EEEEEeCCCcEE-EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 284 LLVSGGKDSLVK-LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 284 ~L~sgs~Dg~I~-IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
.|++++.+..|. +||+.+++.. .+..+...+.+++|++||++|++++.++.|++||+.+++....+..|...|.+++|
T Consensus 350 ~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~ 428 (1045)
T 1k32_A 350 AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 428 (1045)
T ss_dssp EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEE
Confidence 999999888899 9999877654 34477788999999999999999999999999999999988888789999999999
Q ss_pred eCCCCCEEEEEECCC----------cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEecC
Q 005123 363 HPFHEEYFVSGSLDG----------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRN 426 (713)
Q Consensus 363 sp~~~~~lasgs~DG----------~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~~ 426 (713)
+| ++++|++++.++ .|++||+.++. ...+..|...+.+++|++||..|+ +.++..++|+..
T Consensus 429 Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 429 SD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred CC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 99 788888776644 89999997754 455566788899999999997664 377777888753
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=6.8e-21 Score=203.32 Aligned_cols=270 Identities=14% Similarity=0.123 Sum_probs=187.4
Q ss_pred EEEEEEC----CCcEEEEe--CCCCceEE-EEeccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCce--eeeec
Q 005123 158 RLITGSQ----SGEFTLWN--GQSFNFEM-ILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNV--KANKS 225 (713)
Q Consensus 158 ~Latgs~----dg~V~Iwd--~~t~~~~~-~l~~h~~~V~sl~~spdg~~L~sgs~---DG~I~vwdl~~~~~--~~~~~ 225 (713)
+|++|+. ++.|++|+ .++++... ....+...+..++|++|++ |++++. ++.|.+||+.+++. +..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 4555543 44566665 44555443 3344567788899999999 555544 68999999977653 33334
Q ss_pred cCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCC-C--eeEEEEccC---------CCceEEEEEcCCCCEEEEEeCCC
Q 005123 226 AHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR-C--QEERSLTGH---------GWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~-~--~~~~~l~~h---------~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
.+...+..++|++|+++|++++ .+++|++||+.. + +.+..+... ...+.+++|+++++++++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 5677899999999999988888 689999999963 2 223333221 23488999999999666666788
Q ss_pred cEEEEECC-CCceEE--EEcc-CCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCC--Cee--EEEeecCC------CCe
Q 005123 293 LVKLWDAK-SGRELC--SFHG-HKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRA--MKE--LESFRGHR------KDV 357 (713)
Q Consensus 293 ~I~IwDl~-t~~~~~--~~~~-h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t--~~~--l~~~~~h~------~~V 357 (713)
.|++||++ +++... .+.. ....+..++|++||++|+++ ..++.|++||++. ++. +..+.... ..+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence 99999998 454322 2222 23467889999999977664 5678999999874 443 23333322 348
Q ss_pred EEEEEeCCCCCEE-EEEECCCcEEEEEcCCCC--ceEEEecccCCCeEEEEEcCCCcEEE-E--eCCcEEEEecCCCC
Q 005123 358 TALAWHPFHEEYF-VSGSLDGSIFHWLVGHET--PQVEIHNVHDNTVWDLAWHPIGYLLC-S--NDHTTKFWCRNRPG 429 (713)
Q Consensus 358 ~sl~fsp~~~~~l-asgs~DG~I~Iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg~~la-S--~Dg~v~iWd~~~~~ 429 (713)
..++|++ ++++| ++...++.|.+|+++... ..+.....+...+.+++|++|+.+|+ + .++.|.+|+++...
T Consensus 243 ~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~t 319 (347)
T 3hfq_A 243 AAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTS 319 (347)
T ss_dssp EEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCC
Confidence 8999999 56654 667778999999996432 22333344556789999999997554 3 45899999886543
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=5.2e-22 Score=233.08 Aligned_cols=272 Identities=12% Similarity=0.165 Sum_probs=197.9
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceE-EEEeccC-----------------CCEEEEEEccCCCEEEEEeCCC
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE-MILQAHD-----------------HAIRSMVWSHNDNWMVSGDDGG 208 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~-~~l~~h~-----------------~~V~sl~~spdg~~L~sgs~DG 208 (713)
+..+.|+ ++.+++++.|+ | +||+.+++.+ ..+..+. ..|.+++|++| +.|+.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 5557888 67788888888 8 9999998873 4444333 56999999999 7666664 59
Q ss_pred cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-----CeeEEEEccCCCc-----------
Q 005123 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-----CQEERSLTGHGWD----------- 272 (713)
Q Consensus 209 ~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-----~~~~~~l~~h~~~----------- 272 (713)
.|++||+.+++.... ..+...+.+++|++|+++|+++ .|+.|++||+.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 102 GLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 999999998876544 4556778999999999999985 679999999988 7665444333332
Q ss_pred ---eEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCceEEEEc--cCCCC
Q 005123 273 ---VKSVDWHPTKSLLVSGG---------------------------------KDSLVKLWDAKSGRELCSFH--GHKNM 314 (713)
Q Consensus 273 ---V~sl~~spdg~~L~sgs---------------------------------~Dg~I~IwDl~t~~~~~~~~--~h~~~ 314 (713)
+.+++|+||+++|++++ .+..|++||+++++...... .+...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 48999999999999987 34679999999887654432 45677
Q ss_pred eEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeeEEEee-c-CCC---CeEEEEEeC-CCCCEEEEEECCCcEEEEE
Q 005123 315 VLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFR-G-HRK---DVTALAWHP-FHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 315 I~si~fspdg~~Latgs~Dg-----~I~IwDl~t~~~l~~~~-~-h~~---~V~sl~fsp-~~~~~lasgs~DG~I~Iwd 383 (713)
+.+++|++||++|++++.++ .|++||+.+++.+..+. . +.. .+.+++|++ .++++|++++.|+.++||+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 99999999999999988776 89999999984333332 2 222 246789998 1356888999999999999
Q ss_pred cCCCCceEEEecccCCCeEE-EEEcCCCcEEE--E-eCC--cEEEEecC
Q 005123 384 VGHETPQVEIHNVHDNTVWD-LAWHPIGYLLC--S-NDH--TTKFWCRN 426 (713)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~-l~~spdg~~la--S-~Dg--~v~iWd~~ 426 (713)
++........+..+...|.+ ++|++++..|+ + .++ .++||.++
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 87444455666667777877 79999996553 3 343 34555444
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=4.1e-21 Score=202.38 Aligned_cols=240 Identities=9% Similarity=0.034 Sum_probs=189.3
Q ss_pred ceEEEEEccCCCEEEEE-ECCCcEEEEeCCCCceEEEEecc-----CCCEEEEEEccCCCEEEEEe------------CC
Q 005123 146 SINRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAH-----DHAIRSMVWSHNDNWMVSGD------------DG 207 (713)
Q Consensus 146 ~V~~v~~spdg~~Latg-s~dg~V~Iwd~~t~~~~~~l~~h-----~~~V~sl~~spdg~~L~sgs------------~D 207 (713)
.+.+++|++++++|+++ ..++.|++||+.+++.+..+... ...+.+++|++++++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 47789999999877654 55789999999999888776642 22577899999999999886 57
Q ss_pred CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
+.|.+||+.+++.+..+.. ...+.+++|++++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+++++.|++
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWN 190 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEee
Confidence 9999999999887766654 5568899999999988888 68899999999988877764431 113378888886655
Q ss_pred EeCCC------------------------cEEEEECCCCceE-EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 288 GGKDS------------------------LVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 288 gs~Dg------------------------~I~IwDl~t~~~~-~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
.+.++ .|.+||+++++.. ..+..+...+.+++|++|+++|+++ ++.|++||++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 54332 4689999998764 2234456678899999999999988 7899999999
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE
Q 005123 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~ 393 (713)
+++.+..+.. ...+.+++|++ ++++|++++.++.|++||+.+.+....+
T Consensus 269 ~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 269 KNASIKRVPL-PHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp TTEEEEEEEC-SSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred CCcCcceecC-CCceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 9998887764 35678999999 6778888888999999999877654443
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=1.1e-20 Score=201.70 Aligned_cols=243 Identities=9% Similarity=0.097 Sum_probs=176.7
Q ss_pred CCCceEEEEEccCCCEEEEEEC---CCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNN 216 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~---dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~ 216 (713)
+...+..++|++||+ |++++. ++.|++||+.+++ .+..+..+...+..++|++|+++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 445678899999999 665554 6899999997765 3344455778899999999999998887 67999999996
Q ss_pred C-Cc--eeeeecc---------CCCCeeEEEEecCCCEEEEEECCCeEEEEEcC-CCeeEE--EEcc-CCCceEEEEEcC
Q 005123 217 M-NN--VKANKSA---------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEER--SLTG-HGWDVKSVDWHP 280 (713)
Q Consensus 217 ~-~~--~~~~~~~---------~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~-~~~~~~--~l~~-h~~~V~sl~~sp 280 (713)
. +. .+..+.. ....+.+++|+++++++++...++.|++||+. +++... .+.. ....+..++|++
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 3 22 2222211 12348899999999966666678899999998 443322 2222 234688999999
Q ss_pred CCCEEEE-EeCCCcEEEEECCC--Cce--EEEEccCC------CCeEEEEEcCCCCEEE-EEECCCeEEEEECC---CCe
Q 005123 281 TKSLLVS-GGKDSLVKLWDAKS--GRE--LCSFHGHK------NMVLCVKWNQNGNWVL-TASKDQIIKLYDIR---AMK 345 (713)
Q Consensus 281 dg~~L~s-gs~Dg~I~IwDl~t--~~~--~~~~~~h~------~~I~si~fspdg~~La-tgs~Dg~I~IwDl~---t~~ 345 (713)
|+++|++ +..++.|.+||++. ++. +..+.... ..+..++|++||++|+ +...++.|.+||+. +.+
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 9996666 45678999999874 443 22332222 4588999999999885 45568999999997 335
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEEC-CCcEEEEEcCCC
Q 005123 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSL-DGSIFHWLVGHE 387 (713)
Q Consensus 346 ~l~~~~~h~~~V~sl~fsp~~~~~lasgs~-DG~I~Iwd~~~~ 387 (713)
.+..+..+...+..++|++ ++++|++++. ++.|.+|+++..
T Consensus 277 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~ 318 (347)
T 3hfq_A 277 LIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLT 318 (347)
T ss_dssp EEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTT
T ss_pred EeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCC
Confidence 5666776777789999999 6777776665 589999976543
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=1.9e-21 Score=216.06 Aligned_cols=199 Identities=16% Similarity=0.160 Sum_probs=159.1
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCC----------ceEE-----EEeccCCCEEEEEEccCCCEEE----EE
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----------NFEM-----ILQAHDHAIRSMVWSHNDNWMV----SG 204 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~----------~~~~-----~l~~h~~~V~sl~~spdg~~L~----sg 204 (713)
...++++++++++.+|++++.|+ |+||+..+. ..+. ....+...|++++|++++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34588999999999999999988 888863210 0111 1123567899999999999999 77
Q ss_pred eCCCcEEEEEcCCC--------c---eeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc
Q 005123 205 DDGGAIKYWQNNMN--------N---VKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD 272 (713)
Q Consensus 205 s~DG~I~vwdl~~~--------~---~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~ 272 (713)
+.|+.|+|||+++. + ....+.+|...|++++|+++ +.+|++++.||+|++||++++..+.....|...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999998654 1 13455678999999999998 789999999999999999998777677778899
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC-------CCCeEEEEEcCCCCEEEE-EECCC------eEEE
Q 005123 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-------KNMVLCVKWNQNGNWVLT-ASKDQ------IIKL 338 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h-------~~~I~si~fspdg~~Lat-gs~Dg------~I~I 338 (713)
|.+++|++++++|++|+.|++|++||++ ++....+..+ ...|.+++|++++.++++ .+.|| .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 9999999999999999999999999998 5655555433 237999999998877764 33443 3999
Q ss_pred EECCCC
Q 005123 339 YDIRAM 344 (713)
Q Consensus 339 wDl~t~ 344 (713)
||+++.
T Consensus 274 ~~l~~~ 279 (434)
T 2oit_A 274 ALLPKK 279 (434)
T ss_dssp EECCCT
T ss_pred EEeccC
Confidence 999864
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=4.5e-20 Score=198.28 Aligned_cols=261 Identities=6% Similarity=0.024 Sum_probs=186.3
Q ss_pred CCCceEEEEEccCCCEEEEEECC----CcEEEEeCCC--Cce--EEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEE
Q 005123 143 NRCSINRVLWTPTGRRLITGSQS----GEFTLWNGQS--FNF--EMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYW 213 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~d----g~V~Iwd~~t--~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vw 213 (713)
+...+..++|++|+++|++++.+ +.|.+|++.. ++. +..+..+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677889999999999999886 7999998765 433 3333445667888888 888888776 57899999
Q ss_pred EcCCCceeeeec--------------cCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCee------E-------EE
Q 005123 214 QNNMNNVKANKS--------------AHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQE------E-------RS 265 (713)
Q Consensus 214 dl~~~~~~~~~~--------------~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~------~-------~~ 265 (713)
++.....+..+. .+...+.+++|++++++|++++. ++.|++|++..... + ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997543322111 11234578999999997766654 78999999875431 1 22
Q ss_pred EccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--EEEEc---cCCCCeEEEEEcCCCCEEEEEECC--CeEE
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRE--LCSFH---GHKNMVLCVKWNQNGNWVLTASKD--QIIK 337 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t~~~--~~~~~---~h~~~I~si~fspdg~~Latgs~D--g~I~ 337 (713)
.......+.+++|++++++|++++ .++.|.+||+++++. +..+. .+.....+++|++||++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 233456788999999999888777 589999999987654 22222 233457899999999999877765 8999
Q ss_pred EEECC--CCe--eEEEeecCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCceEEEe--cccCCCeEEEEEc
Q 005123 338 LYDIR--AMK--ELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWH 407 (713)
Q Consensus 338 IwDl~--t~~--~l~~~~~h~~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~~~~~--~~h~~~V~~l~~s 407 (713)
|||++ +++ .+..+.. ...+.+++|++ ++++|++++ .++.|.+|+++.....+... ..+...+.||+|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99996 344 4455554 56788999999 677777666 67899998775433333332 2345678999886
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=2.7e-20 Score=197.93 Aligned_cols=228 Identities=12% Similarity=0.071 Sum_probs=188.2
Q ss_pred CceEEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEeccCCC---------EEEEEEccCCCEEEEEe--CCCcEEE
Q 005123 145 CSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHA---------IRSMVWSHNDNWMVSGD--DGGAIKY 212 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h~~~---------V~sl~~spdg~~L~sgs--~DG~I~v 212 (713)
..+.+++|++++++|++++ .++.|.+||..+++.+..+..+... +.+++|++++++|++++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 3477899999999766554 4799999999999988888765432 78999999999888776 4789999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc----CCCceEEEEEcCCCCEEEEE
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG----HGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~----h~~~V~sl~~spdg~~L~sg 288 (713)
||.++++.+..+..+...+.+++|++++++|++++.++.|.+||+.+++.+..+.. +...+.+++|++++++|+++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 99999998888765667789999999999999999999999999999988877764 45568899999999977776
Q ss_pred eC-CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCC
Q 005123 289 GK-DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH 366 (713)
Q Consensus 289 s~-Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~ 366 (713)
+. ++.|.+||+++++.+..+.... ..+++|++++++|++++ .++.|.+||+.+++.+..+.. ...+.+++|++ +
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-d 324 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSA-D 324 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECT-T
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcC-C
Confidence 65 4899999999999888776433 36799999999777666 689999999999998888774 34789999999 5
Q ss_pred CCEEEEEECC
Q 005123 367 EEYFVSGSLD 376 (713)
Q Consensus 367 ~~~lasgs~D 376 (713)
+++|+++..+
T Consensus 325 g~~l~v~~~~ 334 (353)
T 3vgz_A 325 GKTLYVSVKQ 334 (353)
T ss_dssp SCEEEEEEEC
T ss_pred CCEEEEEEcc
Confidence 6655555444
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=7.1e-21 Score=201.81 Aligned_cols=236 Identities=9% Similarity=0.029 Sum_probs=184.5
Q ss_pred EEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeecc
Q 005123 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
.++++++++++++++.++.|++||..+++.+..+..+. ..+..++|++++++++ ++..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678888899999999999999999998888877543 2578999999998765 445689999999999887766543
Q ss_pred C------CCCeeEEEEecCCCEEEEEECC------------CeEEEEEcCCCe---eEEEEccCCCceEEEEEcCCCCEE
Q 005123 227 H------KESVRDLSFCRTDLKFCSCSDD------------TTVKVWDFARCQ---EERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 227 ~------~~~V~~l~fs~dg~~Las~s~D------------g~I~iwDl~~~~---~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
. ...+.+++|++++++|++++.+ +.|.+||+.+++ .+..+. +...+.+++|+++++ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 2 2347899999999999998865 899999998743 233443 344688999999999 5
Q ss_pred EEEeCCCcEEEEECCCCceEEEEccCC-----------------------------------------------------
Q 005123 286 VSGGKDSLVKLWDAKSGRELCSFHGHK----------------------------------------------------- 312 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~~~~~~~~h~----------------------------------------------------- 312 (713)
++++ +.|++||+++++.+..+....
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 5554 349999999988776654321
Q ss_pred ---------------CCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 313 ---------------NMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 313 ---------------~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
..+.+++|++ ++++|+++ ++.|++||+++++.+..+.. ...+.+++|++ ++++|++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTF 315 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBS
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecCC
Confidence 1345677889 99999888 88999999999998887763 34578999999 56666667888
Q ss_pred CcEEEEEcCCCCceEE
Q 005123 377 GSIFHWLVGHETPQVE 392 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~ 392 (713)
+.|++||+++.+....
T Consensus 316 ~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 316 NDLAVFNPDTLEKVKN 331 (349)
T ss_dssp SEEEEEETTTTEEEEE
T ss_pred CeEEEEeccccceeee
Confidence 9999999977654433
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=236.21 Aligned_cols=279 Identities=7% Similarity=0.003 Sum_probs=196.8
Q ss_pred ceEEEEEccCCCEEEEEEC---------CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 146 SINRVLWTPTGRRLITGSQ---------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~---------dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.|.+++|||||++|++++. ++.|+|||+.+++.+... .....+.+++|||||++|+++. ++.|++||+.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4789999999999998876 789999999988762101 1135688999999999999886 7899999998
Q ss_pred CCceeeee-ccCCCC-----------------eeEEEEecCCCEEEEEECCC----------------------------
Q 005123 217 MNNVKANK-SAHKES-----------------VRDLSFCRTDLKFCSCSDDT---------------------------- 250 (713)
Q Consensus 217 ~~~~~~~~-~~~~~~-----------------V~~l~fs~dg~~Las~s~Dg---------------------------- 250 (713)
+++..... .++... ..+++|++||++|++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 88765433 222221 25899999999999987652
Q ss_pred ------eEEEEEcCCCeeE--EE------EccCCCceEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCceEEEE
Q 005123 251 ------TVKVWDFARCQEE--RS------LTGHGWDVKSVDWHPTKSLLVSGGKD----SLVKLWD----AKSGRELCSF 308 (713)
Q Consensus 251 ------~I~iwDl~~~~~~--~~------l~~h~~~V~sl~~spdg~~L~sgs~D----g~I~IwD----l~t~~~~~~~ 308 (713)
+|++||+.+++.+ .. +..+...+.+++|+||++++++.... ..|.+|| +.+++....+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7899999887642 11 23577789999999998776664432 2488999 8777655444
Q ss_pred ----ccCCCCeE-----EEEEcCCCCEEEE--EECCC--eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 309 ----HGHKNMVL-----CVKWNQNGNWVLT--ASKDQ--IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 309 ----~~h~~~I~-----si~fspdg~~Lat--gs~Dg--~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
..+...+. ++.|++||+.|+. ...++ .|++||+.+++ ...+..+...|..+.++ +++.+++++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence 35666676 8899999996654 33444 57788887766 45555566678888777 45555555554
Q ss_pred ----CCcEEEEEcCCCCc--eEEEecc----cCCCeEEEEEcCCCcEEE---E--eCCcEEEEecCCC
Q 005123 376 ----DGSIFHWLVGHETP--QVEIHNV----HDNTVWDLAWHPIGYLLC---S--NDHTTKFWCRNRP 428 (713)
Q Consensus 376 ----DG~I~Iwd~~~~~~--~~~~~~~----h~~~V~~l~~spdg~~la---S--~Dg~v~iWd~~~~ 428 (713)
++.+++|.+..... ....+.. |...+..+.|++++.+++ + ....+.+|+++..
T Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 48899998864221 2233322 556788999999885443 2 2246788877543
No 156
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.88 E-value=2.6e-21 Score=225.42 Aligned_cols=287 Identities=9% Similarity=-0.044 Sum_probs=206.4
Q ss_pred eeCCCCCceEEEEEccCCCEEEEE--ECCCcEEEEeCCCCceEEEEeccCCCEE---------EEEEc--cCCCE-EEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITG--SQSGEFTLWNGQSFNFEMILQAHDHAIR---------SMVWS--HNDNW-MVSG 204 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latg--s~dg~V~Iwd~~t~~~~~~l~~h~~~V~---------sl~~s--pdg~~-L~sg 204 (713)
.+.+|...|..++|+++.-+++.. +.++...||....+.....+..+...|. .+.|+ ||+++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 355788899999999776555555 4578899998655556667777776666 66676 99998 7765
Q ss_pred eC-CCcEEEEEcC--C-Cceeeeecc-----CCCCeeEEEEecCCCEEEEEECC----------CeEEEEEcCC------
Q 005123 205 DD-GGAIKYWQNN--M-NNVKANKSA-----HKESVRDLSFCRTDLKFCSCSDD----------TTVKVWDFAR------ 259 (713)
Q Consensus 205 s~-DG~I~vwdl~--~-~~~~~~~~~-----~~~~V~~l~fs~dg~~Las~s~D----------g~I~iwDl~~------ 259 (713)
+. +..|.+|++. . ++ ...+.. +...+.+++|++|++.|++++.| ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 54 5566666665 2 43 333444 56678999999999999998876 5899999987
Q ss_pred CeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---ceEEEEccCCCCeEEEEEcCCCCE
Q 005123 260 CQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAK-SG---RELCSFHGHKNMVLCVKWNQNGNW 326 (713)
Q Consensus 260 ~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~D--------g~I~IwDl~-t~---~~~~~~~~h~~~I~si~fspdg~~ 326 (713)
++ ...+. .+...+.+++|+|||++|++++.+ ..|++||+. ++ +.......+...+..++|++||++
T Consensus 177 ~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 177 SA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred Cc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 44 34555 556778899999999999988755 379999999 56 444444445788999999999997
Q ss_pred EEEEECCC--eEEEEECCCCeeEEEeecCCCC--------eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc
Q 005123 327 VLTASKDQ--IIKLYDIRAMKELESFRGHRKD--------VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396 (713)
Q Consensus 327 Latgs~Dg--~I~IwDl~t~~~l~~~~~h~~~--------V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~ 396 (713)
+++++.++ .|++||+.+++....+..+... +.+++|++ ++.++++++. +.++||.++........+..
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~ 333 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGELVDAAG 333 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTEEEECCS
T ss_pred EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCcEEEecC
Confidence 77887788 6777777677655444433222 56788988 7889999998 99999965443333556666
Q ss_pred cCCCeEEE-EEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 397 HDNTVWDL-AWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 397 h~~~V~~l-~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
+...+..+ +++.+..++++ .+....||.++..+
T Consensus 334 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~ 369 (662)
T 3azo_A 334 PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVT 369 (662)
T ss_dssp SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 77778877 66666555543 55666777665433
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=1e-19 Score=195.49 Aligned_cols=271 Identities=8% Similarity=0.094 Sum_probs=187.0
Q ss_pred CCEEEEEEC----CCcEEEEeC--CCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC----CcEEEEEcCC--Cce--e
Q 005123 156 GRRLITGSQ----SGEFTLWNG--QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQNNM--NNV--K 221 (713)
Q Consensus 156 g~~Latgs~----dg~V~Iwd~--~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D----G~I~vwdl~~--~~~--~ 221 (713)
..++++|+. ++.|++|++ ++++.......+...+..++|++|+++|++++.+ +.|.+|+++. ++. +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 345666654 567888865 5565544333367788899999999999998876 7999998875 433 2
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEEE------cc--------CCCceEEEEEcCCCCEEE
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSL------TG--------HGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l------~~--------h~~~V~sl~~spdg~~L~ 286 (713)
.....+......+++ ++++|++++ .+++|.+||+.....+..+ .+ +...+.+++|+|++++|+
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 233335566778888 888877776 5789999999754322111 11 122358899999999776
Q ss_pred EEe-CCCcEEEEECCCCce------E-------EEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCee--EEE
Q 005123 287 SGG-KDSLVKLWDAKSGRE------L-------CSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE--LES 349 (713)
Q Consensus 287 sgs-~Dg~I~IwDl~t~~~------~-------~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~--l~~ 349 (713)
+++ .++.|++|+++.... + .........+..++|++||++|++++ .++.|.+||+++++. +..
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 665 478999998875431 1 12233455688999999999888877 689999999987754 233
Q ss_pred ee---cCCCCeEEEEEeCCCCCEEEEEEC--CCcEEEEEcCCC--Cc-eEEEecccCCCeEEEEEcCCCcEEE-E--eCC
Q 005123 350 FR---GHRKDVTALAWHPFHEEYFVSGSL--DGSIFHWLVGHE--TP-QVEIHNVHDNTVWDLAWHPIGYLLC-S--NDH 418 (713)
Q Consensus 350 ~~---~h~~~V~sl~fsp~~~~~lasgs~--DG~I~Iwd~~~~--~~-~~~~~~~h~~~V~~l~~spdg~~la-S--~Dg 418 (713)
+. .+...+..++|++ ++++|+++.. ++.|.+|+++.. .. .+..... ...+.+++|++|+.+|+ + .++
T Consensus 251 ~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred EecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence 32 2335578999999 6777765555 489999999632 21 2222222 45788999999997554 3 579
Q ss_pred cEEEEecCCCCC
Q 005123 419 TTKFWCRNRPGD 430 (713)
Q Consensus 419 ~v~iWd~~~~~~ 430 (713)
.|.+|+++....
T Consensus 329 ~v~v~~~d~~~g 340 (361)
T 3scy_A 329 VIQIFERDQATG 340 (361)
T ss_dssp EEEEEEECTTTC
T ss_pred CEEEEEEECCCC
Confidence 999998875443
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=7e-21 Score=205.92 Aligned_cols=286 Identities=12% Similarity=0.060 Sum_probs=201.8
Q ss_pred eeCCCCCceEE-----EEEccCCCEEEEEEC-CC--cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 139 SLNKNRCSINR-----VLWTPTGRRLITGSQ-SG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 139 ~l~~H~~~V~~-----v~~spdg~~Latgs~-dg--~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
.+..|...+.. .+|+|||++|++++. ++ .|++||+.+++.......+...+.+++|++|++.|+.++.++.|
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l 104 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNL 104 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEE
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeE
Confidence 34455555555 889999999999887 66 48889999988777666666666678899999999999999999
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEE--EecCCCEEEEEE----------------------CCCeEEEEEcCCCeeEEEE
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLS--FCRTDLKFCSCS----------------------DDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~--fs~dg~~Las~s----------------------~Dg~I~iwDl~~~~~~~~l 266 (713)
++||+.+++.......+...+.... +++++++++... .+..|++||+.+++... +
T Consensus 105 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l 183 (388)
T 3pe7_A 105 MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-I 183 (388)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-E
T ss_pred EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-e
Confidence 9999999987766666655554444 478998887432 34689999999886544 4
Q ss_pred ccCCCceEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCceEEEEccCC--CCeEEEEEcCCCCEEEEEEC-CC--
Q 005123 267 TGHGWDVKSVDWHP-TKSLLVSGGKD------SLVKLWDAKSGRELCSFHGHK--NMVLCVKWNQNGNWVLTASK-DQ-- 334 (713)
Q Consensus 267 ~~h~~~V~sl~~sp-dg~~L~sgs~D------g~I~IwDl~t~~~~~~~~~h~--~~I~si~fspdg~~Latgs~-Dg-- 334 (713)
..+...+..++|+| |++.|+.++.+ ..|.++|+.+++. ..+..+. ..+..++|++||+.|+..+. ++
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (388)
T 3pe7_A 184 LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSP 262 (388)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCC
T ss_pred ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCC
Confidence 44667799999999 99999887763 3788888876544 3343333 35788999999998765443 22
Q ss_pred --eEEEEECCCCeeEE--EeecCCC---CeEEEEEeCCCCCEEEEE---------ECCCcEEEEEcCCCCceEEEecccC
Q 005123 335 --IIKLYDIRAMKELE--SFRGHRK---DVTALAWHPFHEEYFVSG---------SLDGSIFHWLVGHETPQVEIHNVHD 398 (713)
Q Consensus 335 --~I~IwDl~t~~~l~--~~~~h~~---~V~sl~fsp~~~~~lasg---------s~DG~I~Iwd~~~~~~~~~~~~~h~ 398 (713)
.|++||+.+++... .+..+.. ....++|++ +++.|+.. ..+..|++||+.++.. ..+..+.
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~ 339 (388)
T 3pe7_A 263 DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--HRVARHD 339 (388)
T ss_dssp CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE-EECCC------------CCCCEEEEEETTTTEE--EEEEECC
T ss_pred cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCce--EEecccc
Confidence 39999999887432 3332100 011236899 45555432 4566899999976542 3333344
Q ss_pred C-----------CeEEEEEcCCCcEEE--E-eCCcEEEEecCCCC
Q 005123 399 N-----------TVWDLAWHPIGYLLC--S-NDHTTKFWCRNRPG 429 (713)
Q Consensus 399 ~-----------~V~~l~~spdg~~la--S-~Dg~v~iWd~~~~~ 429 (713)
. .+.+++|++||..|+ + .++...||.++...
T Consensus 340 ~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 340 TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 4 578899999996654 3 67888898876544
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=229.73 Aligned_cols=274 Identities=10% Similarity=0.050 Sum_probs=198.7
Q ss_pred EEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCC---CEEEEEEccCCCEEEEEeC---------CCcEEEEEcC
Q 005123 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH---AIRSMVWSHNDNWMVSGDD---------GGAIKYWQNN 216 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~---~V~sl~~spdg~~L~sgs~---------DG~I~vwdl~ 216 (713)
+++|++|++++ +.+.|+.|++||+.+++....+..+.. .|.+++|||||++|++++. ++.|++||++
T Consensus 20 ~~~~s~dg~~~-~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYL-HQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEE-EECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEE-EEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 67999999644 455799999999999988777766544 4899999999999998876 6899999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-ccCCCce-----------------EEEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDV-----------------KSVDW 278 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~~h~~~V-----------------~sl~~ 278 (713)
+++.+... .....+.+++|+|||+.|+.+. |+.|++||+.+++..... .++...| .+++|
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 98763111 1135689999999999999886 779999999887664432 2222222 58999
Q ss_pred cCCCCEEEEEeCCC----------------------------------cEEEEECCCCceE--EE------EccCCCCeE
Q 005123 279 HPTKSLLVSGGKDS----------------------------------LVKLWDAKSGREL--CS------FHGHKNMVL 316 (713)
Q Consensus 279 spdg~~L~sgs~Dg----------------------------------~I~IwDl~t~~~~--~~------~~~h~~~I~ 316 (713)
+|||++|++++.|. .|++||+.+++.+ .. +..+...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 99999999988652 7889999987653 11 235777899
Q ss_pred EEEEcCCCCEEEEEECC----CeEEEEE----CCCCeeEEEe----ecCCCCeE-----EEEEeCCCCCEEE-EEECCCc
Q 005123 317 CVKWNQNGNWVLTASKD----QIIKLYD----IRAMKELESF----RGHRKDVT-----ALAWHPFHEEYFV-SGSLDGS 378 (713)
Q Consensus 317 si~fspdg~~Latgs~D----g~I~IwD----l~t~~~l~~~----~~h~~~V~-----sl~fsp~~~~~la-sgs~DG~ 378 (713)
+++||||++++++.... ..|++|| +.+++....+ ..|...|. .++|++++..+++ +...+|.
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~ 336 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY 336 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence 99999998777664432 2489999 8887766555 46777776 8899994444433 3445664
Q ss_pred --EEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE-EE-e-----CCcEEEEecCCC
Q 005123 379 --IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CS-N-----DHTTKFWCRNRP 428 (713)
Q Consensus 379 --I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-aS-~-----Dg~v~iWd~~~~ 428 (713)
|++||+..+. ...+..+...|..+.++ ++..+ .+ . ++.++||.++..
T Consensus 337 ~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 337 KHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG 392 (719)
T ss_dssp EEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred eEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence 6666665444 34444455668877777 66444 33 3 478999998763
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=6.5e-21 Score=211.66 Aligned_cols=212 Identities=13% Similarity=0.226 Sum_probs=164.5
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-----------ceee----eeccCCCC
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-----------NVKA----NKSAHKES 230 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-----------~~~~----~~~~~~~~ 230 (713)
+.|++|+.... .....++.+++++++.+|++++.|+ |+||+.... .... ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46888764321 1345688999999999999999888 888874311 1110 01234567
Q ss_pred eeEEEEecCCCEEE----EEECCCeEEEEEcCCC--------e---eEEEEccCCCceEEEEEcCC-CCEEEEEeCCCcE
Q 005123 231 VRDLSFCRTDLKFC----SCSDDTTVKVWDFARC--------Q---EERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLV 294 (713)
Q Consensus 231 V~~l~fs~dg~~La----s~s~Dg~I~iwDl~~~--------~---~~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I 294 (713)
|++++|++++++|+ +++.|++|+|||+++. + .+..+.+|...|.+|+|+|+ +++|++++.|++|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 99999999999999 6788999999998653 1 24455678999999999997 7899999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-------CCeEEEEEeCCCC
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-------KDVTALAWHPFHE 367 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-------~~V~sl~fsp~~~ 367 (713)
+|||++++..+.....|...|++++|+++|++|++|+.|+.|++||++ ++....+..|. ..|.+++|++ +.
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~ 252 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TY 252 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TT
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-Cc
Confidence 999999987777777788999999999999999999999999999998 55555554432 3799999998 55
Q ss_pred CEEEE-EECCCc------EEEEEcCCC
Q 005123 368 EYFVS-GSLDGS------IFHWLVGHE 387 (713)
Q Consensus 368 ~~las-gs~DG~------I~Iwd~~~~ 387 (713)
.++++ .+.||. +++|++++.
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEccCCCccCCCCceEEEEeccC
Confidence 55543 444543 899999765
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=6.1e-19 Score=190.51 Aligned_cols=269 Identities=12% Similarity=0.083 Sum_probs=184.8
Q ss_pred EEEEEECC--CcEEEEeC--CCCceEEEEe---ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-CCceeeeecc-CC
Q 005123 158 RLITGSQS--GEFTLWNG--QSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MNNVKANKSA-HK 228 (713)
Q Consensus 158 ~Latgs~d--g~V~Iwd~--~t~~~~~~l~---~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~-~~~~~~~~~~-~~ 228 (713)
+|++|+.. +.|++|++ .++++..... .....+..++|++|+++|++++.+ .|.+|++. +++....... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 46666653 46777664 4555432221 233468899999999999999887 99999997 6765433221 11
Q ss_pred CCeeEEEEecCCCE--EEEEE-------------CCCeEEEEEcC-CCeeEEEEc----cCCCceEEEEEcCCCCEEEEE
Q 005123 229 ESVRDLSFCRTDLK--FCSCS-------------DDTTVKVWDFA-RCQEERSLT----GHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 229 ~~V~~l~fs~dg~~--Las~s-------------~Dg~I~iwDl~-~~~~~~~l~----~h~~~V~sl~~spdg~~L~sg 288 (713)
..+.+++|++|+++ +++++ .++++.+|++. +++....+. .+...+.+++|+||+++|+++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 33667899999995 44543 68999999997 455443333 245679999999999988877
Q ss_pred eC-CCcEEEEECC-CCceE--EEEc--cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECC--CCeeE---EEeec----
Q 005123 289 GK-DSLVKLWDAK-SGREL--CSFH--GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIR--AMKEL---ESFRG---- 352 (713)
Q Consensus 289 s~-Dg~I~IwDl~-t~~~~--~~~~--~h~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~--t~~~l---~~~~~---- 352 (713)
+. ++.|++||++ +++.. ..+. .+...+..++|++||++|++++. ++.|.+|+++ +++.. ..+..
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 64 6789999998 67643 2333 23567999999999999988775 6899999875 45532 12221
Q ss_pred ---CCC------CeEEEE-EeCCCCCEEEEEECC-C-----cEEEEEcCCCCceEE---EecccCCCeEEEEEcC---CC
Q 005123 353 ---HRK------DVTALA-WHPFHEEYFVSGSLD-G-----SIFHWLVGHETPQVE---IHNVHDNTVWDLAWHP---IG 410 (713)
Q Consensus 353 ---h~~------~V~sl~-fsp~~~~~lasgs~D-G-----~I~Iwd~~~~~~~~~---~~~~h~~~V~~l~~sp---dg 410 (713)
|.. .+..++ |++ ++++|++++.+ . +|.+|+++....... ....+...+..++|+| |+
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred cCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 122 588999 999 67776665532 2 899999963333332 2223455677899999 78
Q ss_pred cEEEE---eCCcEEEEecCCC
Q 005123 411 YLLCS---NDHTTKFWCRNRP 428 (713)
Q Consensus 411 ~~laS---~Dg~v~iWd~~~~ 428 (713)
.+|+. .++.|+||+++..
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 76654 4589999998754
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=9.5e-19 Score=189.02 Aligned_cols=244 Identities=11% Similarity=0.073 Sum_probs=176.7
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCC-CCceEEEEecc-CCCEEEEEEccCCCE--EEEEe-------------
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ-SFNFEMILQAH-DHAIRSMVWSHNDNW--MVSGD------------- 205 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~-t~~~~~~l~~h-~~~V~sl~~spdg~~--L~sgs------------- 205 (713)
....+..++|++|+++|++++.+ .|.+||+. +++........ .+.+.+++|++|+++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 33467889999999999999988 99999987 77665433311 133567899999995 44543
Q ss_pred CCCcEEEEEcCC-Cceeeeec----cCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcC-CCeeE--EEEc--cCCCceE
Q 005123 206 DGGAIKYWQNNM-NNVKANKS----AHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFA-RCQEE--RSLT--GHGWDVK 274 (713)
Q Consensus 206 ~DG~I~vwdl~~-~~~~~~~~----~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~-~~~~~--~~l~--~h~~~V~ 274 (713)
.+|.+.+|+++. ++....+. .+...+.+++|++|+++|++++. ++.|++||+. +++.. ..+. .+...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974 55443332 24567999999999998887764 6799999998 66543 2333 2356799
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECC--CCceEE---EEcc-------CCC------CeEEEE-EcCCCCEEEEEECCC
Q 005123 275 SVDWHPTKSLLVSGGK-DSLVKLWDAK--SGRELC---SFHG-------HKN------MVLCVK-WNQNGNWVLTASKDQ 334 (713)
Q Consensus 275 sl~~spdg~~L~sgs~-Dg~I~IwDl~--t~~~~~---~~~~-------h~~------~I~si~-fspdg~~Latgs~Dg 334 (713)
.++|++++++|++++. ++.|.+|+++ +++... .+.. +.. .+..++ |++||++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999888775 6889999765 455421 2221 121 588999 999999988776432
Q ss_pred ------eEEEEECC-CCeeEE---EeecCCCCeEEEEEeCC--CCCEEEEEEC-CCcEEEEEcCCC
Q 005123 335 ------IIKLYDIR-AMKELE---SFRGHRKDVTALAWHPF--HEEYFVSGSL-DGSIFHWLVGHE 387 (713)
Q Consensus 335 ------~I~IwDl~-t~~~l~---~~~~h~~~V~sl~fsp~--~~~~lasgs~-DG~I~Iwd~~~~ 387 (713)
.|.+||++ +++... .+..+...+..++|+|. ++++|++++. ++.|.||+++..
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 565443 23335556778899994 4677777776 589999998655
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=5.6e-19 Score=187.14 Aligned_cols=232 Identities=9% Similarity=0.035 Sum_probs=173.1
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCC-CCeeEEEEecCCCEEEE-EECCCeEEEEEcCCCeeEEEEcc
Q 005123 191 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTG 268 (713)
Q Consensus 191 sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~-~~V~~l~fs~dg~~Las-~s~Dg~I~iwDl~~~~~~~~l~~ 268 (713)
.++++++++++++++.++.|++||+.+++.+..+.... ..+..++|+++++++++ +..++.|++||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45677788899999999999999999998877765433 25789999999987654 45689999999999888777653
Q ss_pred CC------CceEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCce---EEEEccCCCCeEEEEEcCCCCEE
Q 005123 269 HG------WDVKSVDWHPTKSLLVSGGKD------------SLVKLWDAKSGRE---LCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 269 h~------~~V~sl~~spdg~~L~sgs~D------------g~I~IwDl~t~~~---~~~~~~h~~~I~si~fspdg~~L 327 (713)
.. ..+.+++|++++++|++++.+ +.|.+||+.+++. +..+. +...+.+++|++|++ |
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 32 237899999999999998865 8999999988543 33443 344688999999999 6
Q ss_pred EEEECCCeEEEEECCCCeeEEEeecCC-----------------------------------------------------
Q 005123 328 LTASKDQIIKLYDIRAMKELESFRGHR----------------------------------------------------- 354 (713)
Q Consensus 328 atgs~Dg~I~IwDl~t~~~l~~~~~h~----------------------------------------------------- 354 (713)
++++. .|++||+++++.+..+..+.
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 65543 49999999888776654331
Q ss_pred ---------------CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE-EE-eC
Q 005123 355 ---------------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CS-ND 417 (713)
Q Consensus 355 ---------------~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-aS-~D 417 (713)
..+.+++|++.++++|+++ ++.|++||+.+.+....+.. ...+.+++|++++..| ++ .+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCC
Confidence 1244566777235566666 88999999987654433332 3457899999998544 34 78
Q ss_pred CcEEEEecCCCCC
Q 005123 418 HTTKFWCRNRPGD 430 (713)
Q Consensus 418 g~v~iWd~~~~~~ 430 (713)
+.|++||++....
T Consensus 316 ~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 316 NDLAVFNPDTLEK 328 (349)
T ss_dssp SEEEEEETTTTEE
T ss_pred CeEEEEeccccce
Confidence 9999999865443
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=9e-20 Score=197.06 Aligned_cols=280 Identities=10% Similarity=0.004 Sum_probs=190.7
Q ss_pred ceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 146 SINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
.+.+++|+|||++|+.+..+ ..|++||+.+++.......+...+..+.|++|+++|+.++.++.|++||+.+++...
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 36778999999998877653 468899998876544333333223347899999999999999999999999887665
Q ss_pred eeccCCCCeeE-------------------EEEecCCCEEEEE-----ECCCeEEEEEcCCCeeEEEEccCCCceEEEEE
Q 005123 223 NKSAHKESVRD-------------------LSFCRTDLKFCSC-----SDDTTVKVWDFARCQEERSLTGHGWDVKSVDW 278 (713)
Q Consensus 223 ~~~~~~~~V~~-------------------l~fs~dg~~Las~-----s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~ 278 (713)
....+...... +.|+++++.++.+ ..+..|++||+.+++..... .+...+..+.|
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~ 195 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIY 195 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceE
Confidence 55433332222 3456666665544 35678999999887765444 46678999999
Q ss_pred cC-CCCEEEEEeCC------CcEEEEECCCCceEEEEccC--CCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCC
Q 005123 279 HP-TKSLLVSGGKD------SLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAM 344 (713)
Q Consensus 279 sp-dg~~L~sgs~D------g~I~IwDl~t~~~~~~~~~h--~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~ 344 (713)
++ +++.|+.++.+ ..|.+||+.+++.. .+..+ ...+..++|++||++|++++.+ +.|++||+.++
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 99 78877776653 36889998765533 33322 2357889999999988777544 45999999987
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCCEEEEEE----------------CCCcEEEEEcCCCCceEEEecccCC---------
Q 005123 345 KELESFRGHRKDVTALAWHPFHEEYFVSGS----------------LDGSIFHWLVGHETPQVEIHNVHDN--------- 399 (713)
Q Consensus 345 ~~l~~~~~h~~~V~sl~fsp~~~~~lasgs----------------~DG~I~Iwd~~~~~~~~~~~~~h~~--------- 399 (713)
+....... .. +. +.|++.++++|++++ .+..|++||+.++... .+ ..+..
T Consensus 275 ~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l-~~~~~~~~~~~~~~ 349 (396)
T 3c5m_A 275 ENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KL-CKHSTSWDVLDGDR 349 (396)
T ss_dssp CEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EE-EECCCCCCCBTTBS
T ss_pred CeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-Ec-cCCCCccccccccc
Confidence 65443321 12 33 889982345666654 3468999999766532 22 22333
Q ss_pred --CeEEEEEcCCCcEEE--E-eCCcEEEEecCCCCCcc
Q 005123 400 --TVWDLAWHPIGYLLC--S-NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 400 --~V~~l~~spdg~~la--S-~Dg~v~iWd~~~~~~~~ 432 (713)
.+..++|++|+..|+ + .++...||.++..+...
T Consensus 350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 350 QITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred cCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 256789999996654 3 46777888776554433
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=2e-19 Score=206.60 Aligned_cols=230 Identities=8% Similarity=-0.011 Sum_probs=173.6
Q ss_pred CCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC---CCeEEEEEcCC--
Q 005123 186 DHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFAR-- 259 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~---Dg~I~iwDl~~-- 259 (713)
...|.+++|++||++|++++. ||+++||++++++.......+...+.+++|++| +.+++++. +...+||++..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999998876 999999999776665544333368999999999 77777765 45556655432
Q ss_pred -CeeEEEEccCCCceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC----
Q 005123 260 -CQEERSLTGHGWDVKSVDWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---- 333 (713)
Q Consensus 260 -~~~~~~l~~h~~~V~sl~~spdg~~-L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D---- 333 (713)
+... .+... ..+...+|+++++. +++.+.++.+.|||+++++......... .+++|||||++|++++.+
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence 2222 33322 23556688887753 3344445556699999887665554332 789999999999988877
Q ss_pred CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC--cEEEEEcCCCCceEEEecccCCCeEEEE------
Q 005123 334 QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVHDNTVWDLA------ 405 (713)
Q Consensus 334 g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG--~I~Iwd~~~~~~~~~~~~~h~~~V~~l~------ 405 (713)
+.|++||+.+++.. .+..|...+..++||| ++++|++++.++ .|++||++++... +...|...+.+++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccc
Confidence 78999999987754 5677888899999999 788888888888 8999999776644 6666777777777
Q ss_pred --EcCCCcEEEE--eCCcEEEEec
Q 005123 406 --WHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 406 --~spdg~~laS--~Dg~v~iWd~ 425 (713)
|++||.++++ .|++++||++
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999976654 8999999998
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=9.9e-19 Score=207.00 Aligned_cols=277 Identities=12% Similarity=0.097 Sum_probs=194.3
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCC-----EEEEEEccCCCEEEEEeCC---------CcEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-----IRSMVWSHNDNWMVSGDDG---------GAIK 211 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~-----V~sl~~spdg~~L~sgs~D---------G~I~ 211 (713)
...+++|++|+++|+++ |+.|++||+.+++....+..|... ...++|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999888886 999999999999988888877643 2448899999999988875 5677
Q ss_pred EEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-ccCCCce-----------------
Q 005123 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDV----------------- 273 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~~h~~~V----------------- 273 (713)
+||+.+++... +..+...+...+|||||+.||.+. |+.|++||+.+++..+.. .++...+
T Consensus 96 ~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 96 IYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 99999988654 556677899999999999999885 679999999887654321 1222222
Q ss_pred EEEEEcCCCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--eEEEEc---
Q 005123 274 KSVDWHPTKSLLVSGGKDS------------------------------------LVKLWDAKS---GR--ELCSFH--- 309 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg------------------------------------~I~IwDl~t---~~--~~~~~~--- 309 (713)
.++.|+|||++|+.++.|. +|+|||+.+ ++ ....+.
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 3589999999999875322 488899988 73 233443
Q ss_pred ---cCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCe----eE--EEe--ecCCCCeE-----EEEEeCCCCCE
Q 005123 310 ---GHKNMVLCVKWNQNGNWVLTASK----DQIIKLYDIRAMK----EL--ESF--RGHRKDVT-----ALAWHPFHEEY 369 (713)
Q Consensus 310 ---~h~~~I~si~fspdg~~Latgs~----Dg~I~IwDl~t~~----~l--~~~--~~h~~~V~-----sl~fsp~~~~~ 369 (713)
++...+..++|++||++++.... +..|++||+.+++ +. ..+ ..|...|. .++|++ +++.
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-DG~~ 332 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL-DGNS 332 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT-TSSE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC-CCCE
Confidence 27778999999999997765543 2379999999887 22 122 44555554 789999 5665
Q ss_pred EE-EEEC-CC--cEEEEEcCCCCceEEEecccCCCeEEEE-EcCCCcEEE-E-e----CCcEEEEecCCCCC
Q 005123 370 FV-SGSL-DG--SIFHWLVGHETPQVEIHNVHDNTVWDLA-WHPIGYLLC-S-N----DHTTKFWCRNRPGD 430 (713)
Q Consensus 370 la-sgs~-DG--~I~Iwd~~~~~~~~~~~~~h~~~V~~l~-~spdg~~la-S-~----Dg~v~iWd~~~~~~ 430 (713)
|+ ..+. +| .|++||+..+. ...+. .....|..+. |+ ++.++. + . .+...||.++..+.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~-~~~lT-~g~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~ 401 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKD-CTFIT-KGTWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQLIDY 401 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSS-CEESC-CSSSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred EEEEEEcCCCceEEEEEECCCCc-eEecc-cCCEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEECCCC
Confidence 55 5554 44 57788876543 33333 3344565554 55 333333 3 3 24567777765543
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=1.3e-18 Score=206.07 Aligned_cols=276 Identities=8% Similarity=0.014 Sum_probs=186.8
Q ss_pred eEEEEEccCCCEEEEEECC---------CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 147 INRVLWTPTGRRLITGSQS---------GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~d---------g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
...++|||||++|++++.+ +.++|||+.+++.. .+..|...+..++|||||+.||.+. |+.|++|++.+
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~ 141 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN 141 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence 3468999999999998876 56789999998754 4666778899999999999999885 68999999988
Q ss_pred Cceeeeec-cCCCCe-----------------eEEEEecCCCEEEEEECCC-----------------------------
Q 005123 218 NNVKANKS-AHKESV-----------------RDLSFCRTDLKFCSCSDDT----------------------------- 250 (713)
Q Consensus 218 ~~~~~~~~-~~~~~V-----------------~~l~fs~dg~~Las~s~Dg----------------------------- 250 (713)
++...... ++...+ ..+.|||||++|+.++.|.
T Consensus 142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 77554322 222222 3589999999999875321
Q ss_pred -------eEEEEEcCC---Ce--eEEEEc------cCCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc----e
Q 005123 251 -------TVKVWDFAR---CQ--EERSLT------GHGWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGR----E 304 (713)
Q Consensus 251 -------~I~iwDl~~---~~--~~~~l~------~h~~~V~sl~~spdg~~L~sgs~----Dg~I~IwDl~t~~----~ 304 (713)
+|++||+.+ ++ ....+. ++...+..++|+||+++++.... +..|++||+.+++ +
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 588899988 63 233343 27778999999999997666543 2369999999887 2
Q ss_pred E--EEE--ccCCCCeE-----EEEEcCCCCEEE-EEEC-C--CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 305 L--CSF--HGHKNMVL-----CVKWNQNGNWVL-TASK-D--QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 305 ~--~~~--~~h~~~I~-----si~fspdg~~La-tgs~-D--g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
. ..+ ..+...|. .++|++||+.|+ ..+. + ..|++||+.+++... +......|..+.+ .+++.+++
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f 379 (740)
T 4a5s_A 302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYY 379 (740)
T ss_dssp CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEE
T ss_pred eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEE
Confidence 2 222 44555554 789999999887 6654 3 368999998766554 3334555666543 32455555
Q ss_pred EEEC----CCcEEEEEcCCCCceEE-Eecc----cCCCeEEEEEcCCCcEEE-EeC----CcEEEEecC
Q 005123 372 SGSL----DGSIFHWLVGHETPQVE-IHNV----HDNTVWDLAWHPIGYLLC-SND----HTTKFWCRN 426 (713)
Q Consensus 372 sgs~----DG~I~Iwd~~~~~~~~~-~~~~----h~~~V~~l~~spdg~~la-S~D----g~v~iWd~~ 426 (713)
+++. .+...||.++....... .+.. ....+..+.|++++.+++ ... ..+.+++.+
T Consensus 380 ~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 380 ISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp EESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred EEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 5554 24455555543332222 2321 235788999999997654 222 256666553
No 168
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.81 E-value=8.9e-18 Score=178.74 Aligned_cols=257 Identities=11% Similarity=0.064 Sum_probs=183.1
Q ss_pred CceEEEEEccCCCEEEEEE---------CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---C--cE
Q 005123 145 CSINRVLWTPTGRRLITGS---------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---G--AI 210 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs---------~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G--~I 210 (713)
..|..++| ||++|+... .++.|++||+.+++... + ..+.+++|+|||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34677777 888887653 25679999999876543 3 568899999999999877653 3 37
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC---------------------------CeEEEEEcCCCeeE
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD---------------------------TTVKVWDFARCQEE 263 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D---------------------------g~I~iwDl~~~~~~ 263 (713)
.+||+.+++........ . +.+++|++|++.|+.++.+ ..|++||+.+++.+
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 78888887765544333 3 9999999999998887632 57999999988764
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC---
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDS-------LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--- 333 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg-------~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D--- 333 (713)
..+.. . .+..++|++++ +++++..+. ...||.+++++. ..+..+ ..+..+ ++||++|++++.+
T Consensus 166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence 55554 3 78899999999 777776542 334444434443 334333 445544 9999999887754
Q ss_pred -----CeEEEEECCCCeeEEEeecCCCCeEE-EEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEc
Q 005123 334 -----QIIKLYDIRAMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 334 -----g~I~IwDl~t~~~l~~~~~h~~~V~s-l~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (713)
..|++|| +++....+..+...+.. +.|+ + + ++++++.++.++|| +.+ .....+. .+...|.+++|+
T Consensus 239 ~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-d-g-~~~~~~~~~~~~l~-~~~-g~~~~~~-~~~~~v~~~~~s 310 (347)
T 2gop_A 239 YMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-G-K-VYFTLFEEGSVNLY-IWD-GEIKPIA-KGRHWIMGFDVD 310 (347)
T ss_dssp CCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-T-E-EEEEEEETTEEEEE-EES-SSEEEEE-CSSSEEEEEEES
T ss_pred CccccceEEEEC--CCceEeccccCCcccCCccEEc-C-c-EEEEEecCCcEEEE-EcC-CceEEEe-cCCCeEEeeeee
Confidence 3688888 56655555566777886 8998 4 5 88999999999999 873 3333333 457789999999
Q ss_pred CCCcEEEE-eCCcE-EEEecC
Q 005123 408 PIGYLLCS-NDHTT-KFWCRN 426 (713)
Q Consensus 408 pdg~~laS-~Dg~v-~iWd~~ 426 (713)
+ ..+++. .++.. +||.++
T Consensus 311 ~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 311 E-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp S-SEEEEEECSSSCCEEEEES
T ss_pred C-cEEEEEcCCCChHHheEeC
Confidence 9 644443 55554 888886
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=1.5e-17 Score=177.09 Aligned_cols=241 Identities=7% Similarity=0.035 Sum_probs=188.5
Q ss_pred CCceEEEEEccCCCEEEEEECC------------------------CcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCC
Q 005123 144 RCSINRVLWTPTGRRLITGSQS------------------------GEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHND 198 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~d------------------------g~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg 198 (713)
-+.|.+|+++++|+++++...+ +.|++||..+++.+..+. .+-.....|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4579999999999988888777 479999999888876665 344678999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCc-eeeee---------ccCCCCeeEEEEec-CCCEEEEEE-CCCeEEEEEcCCCeeEEEE
Q 005123 199 NWMVSGDDGGAIKYWQNNMNN-VKANK---------SAHKESVRDLSFCR-TDLKFCSCS-DDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 199 ~~L~sgs~DG~I~vwdl~~~~-~~~~~---------~~~~~~V~~l~fs~-dg~~Las~s-~Dg~I~iwDl~~~~~~~~l 266 (713)
+++++...++.|++||.+... .+..+ ..+.....+|++++ ++.++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888888999999986552 33333 23344689999999 777777775 689999999 556666666
Q ss_pred ccC----------CCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEc--cCCCCeEEEEEcC------CCCEE
Q 005123 267 TGH----------GWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ------NGNWV 327 (713)
Q Consensus 267 ~~h----------~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~--~h~~~I~si~fsp------dg~~L 327 (713)
... ......|+++++ ++++++...++.|++||.++++.+..+. .+...+.+++|++ +++.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~ 261 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY 261 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence 422 234889999998 6777777788899999999898888874 3556788999998 33322
Q ss_pred EEEECCCeEEEEECCCCeeEEEee---cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 328 LTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 328 atgs~Dg~I~IwDl~t~~~l~~~~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
++...+..|++||+.+++.+..+. .+...+..|++++ ++.++++...+++|++|++..
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 223345589999999999988873 5667899999999 678899999999999999853
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=5.8e-17 Score=167.99 Aligned_cols=239 Identities=10% Similarity=0.112 Sum_probs=182.5
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec------cCCCEEEEEEc-cCCCEEEEEeC-CCcEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA------HDHAIRSMVWS-HNDNWMVSGDD-GGAIKYW 213 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~------h~~~V~sl~~s-pdg~~L~sgs~-DG~I~vw 213 (713)
++-..+.+++++++++++++...++.|++||.. ++.+..+.. +...+.+++++ ++++++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455679999999999988888889999999987 555555542 34578999994 56655555533 7899999
Q ss_pred EcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeC
Q 005123 214 QNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 214 dl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
| .+++.+..+. .....+.+++++++++++++...++.|++||.. ++.+..+. .+...+.+|+++++++++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 4555555443 334678999999999988877788999999964 45555553 34467899999999988777778
Q ss_pred CCcEEEEECCCCceEEEEccC--CCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCeeEEEeecCC--CCeEEEEEeCC
Q 005123 291 DSLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHR--KDVTALAWHPF 365 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h--~~~I~si~fspdg~~Latgs~Dg-~I~IwDl~t~~~l~~~~~h~--~~V~sl~fsp~ 365 (713)
++.|++||.. ++.+..+... ...+..|+++++|+++++...++ .|++||.. ++.+..+..+. ..+.++++++
T Consensus 184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~- 260 (286)
T 1q7f_A 184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMD- 260 (286)
T ss_dssp GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEET-
T ss_pred CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECC-
Confidence 8999999974 5666666533 36789999999999888887776 99999964 66676666543 3478999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
+++++++ +.|++|++|++...
T Consensus 261 ~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 261 DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCcEEEE-CCCCeEEEEEcccc
Confidence 6777776 67999999998543
No 171
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.79 E-value=1.7e-15 Score=156.66 Aligned_cols=282 Identities=7% Similarity=-0.032 Sum_probs=203.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
...+..+...+.+++++++|+++++...++.|.+||.. ++..... ..+...+.+++++++++++++...++.|..||.
T Consensus 7 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 7 ELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp EEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 34556677889999999999977766668899999988 5543322 234578999999999988887777889999997
Q ss_pred CCCceee-eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 216 NMNNVKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 216 ~~~~~~~-~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
+ ++... .+......+.++++.++++++++...++.|.+||. +++.... +......+.+++++++++++++...++.
T Consensus 86 ~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 86 K-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp T-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred C-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 6 33322 22224567899999999988887777889999998 4443322 2334567899999999987777777789
Q ss_pred EEEEECCCCceEEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE-eecCCCCeEEEEEeCCCCCEEE
Q 005123 294 VKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 294 I~IwDl~t~~~~~~-~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~-~~~h~~~V~sl~fsp~~~~~la 371 (713)
|.+||. +++.... +......+.+++++++++++++...++.|.+||. +++.... +..+...+.++++++ ++++++
T Consensus 164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v 240 (299)
T 2z2n_A 164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-GIDLWF 240 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEE
T ss_pred EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-CCCEEE
Confidence 999998 6655433 2334556889999999987776666889999999 6654332 233456789999998 677777
Q ss_pred EEECCCcEEEEEcCCCCceEEE-ecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCC
Q 005123 372 SGSLDGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNR 427 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~ 427 (713)
+...++.|.+||.+ +. ...+ ...+...+.++++ +++.+.++ ..+.|..++.+.
T Consensus 241 ~~~~~~~i~~~d~~-g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~ 295 (299)
T 2z2n_A 241 TEWGANKIGRLTSN-NI-IEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIK 295 (299)
T ss_dssp EETTTTEEEEEETT-TE-EEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC-
T ss_pred eccCCceEEEECCC-Cc-eEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCc
Confidence 76678899999983 32 2222 2334567999999 88877665 467777776643
No 172
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=9.1e-17 Score=189.17 Aligned_cols=272 Identities=7% Similarity=-0.029 Sum_probs=189.6
Q ss_pred cCCCEEEEEECC-----CcEEEEeCCCCceEEEEe------ccCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCC
Q 005123 154 PTGRRLITGSQS-----GEFTLWNGQSFNFEMILQ------AHDHAIRSMVWSHNDNWMVSGDDGG-----AIKYWQNNM 217 (713)
Q Consensus 154 pdg~~Latgs~d-----g~V~Iwd~~t~~~~~~l~------~h~~~V~sl~~spdg~~L~sgs~DG-----~I~vwdl~~ 217 (713)
++|++++....+ +.|++.+..+++....+. +|...+..++|||||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 678877765433 244555555544433332 2334688999999999998765433 899999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCe----------------EEEEEcCCCee--EEEEcc--CCCceEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT----------------VKVWDFARCQE--ERSLTG--HGWDVKSVD 277 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~----------------I~iwDl~~~~~--~~~l~~--h~~~V~sl~ 277 (713)
++....... ...+.+++|++|++.|+.++.++. |++|++.++.. ...+.. +...+.++.
T Consensus 161 g~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 987654322 223778999999999999988766 99999987653 222332 445688999
Q ss_pred EcCCCCEEEEEeC-----CCcEEEEECCC------Cc-eEEEEccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEEC
Q 005123 278 WHPTKSLLVSGGK-----DSLVKLWDAKS------GR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKD----QIIKLYDI 341 (713)
Q Consensus 278 ~spdg~~L~sgs~-----Dg~I~IwDl~t------~~-~~~~~~~h~~~I~si~fspdg~~Latgs~D----g~I~IwDl 341 (713)
|++|+++|++++. +..|++||+.+ ++ ....+..+...+.. .|+++|+.|+..+.+ ..|.+||+
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~ 318 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF 318 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 9999999988765 56899999986 43 35556555555554 488899988877653 36999999
Q ss_pred CCCe--eEEEeecCCC--CeEEEEEeCCCCCEEEEEECCCc--EEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-
Q 005123 342 RAMK--ELESFRGHRK--DVTALAWHPFHEEYFVSGSLDGS--IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC- 414 (713)
Q Consensus 342 ~t~~--~l~~~~~h~~--~V~sl~fsp~~~~~lasgs~DG~--I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 414 (713)
.+++ ....+..+.. .|..++|++ ++.++++...|+. |++||+.++. ....+..+.+.|..+++++++..++
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~~~~~~v~~~~~s~d~~~l~~ 396 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGA-LLKIFPLEVGSVVGYSGQKKDTEIFY 396 (710)
T ss_dssp TSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCC-EEEEECCCSSEEEEEECCTTCSEEEE
T ss_pred CCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCC-EEEecCCCCceEEEEecCCCCCEEEE
Confidence 8764 2344444543 688899986 6788889988885 5556664444 3344445677889999999884432
Q ss_pred E-----eCCcEEEEecCCCC
Q 005123 415 S-----NDHTTKFWCRNRPG 429 (713)
Q Consensus 415 S-----~Dg~v~iWd~~~~~ 429 (713)
+ ..++|.+||+....
T Consensus 397 ~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECSSCCCEEEEEETTSSS
T ss_pred EEeCCCCCCEEEEEECCCCc
Confidence 2 45789999886544
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=4.3e-16 Score=161.43 Aligned_cols=236 Identities=10% Similarity=0.128 Sum_probs=177.0
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec------cCCCCeeEEEEe-cCCCEEEEEEC-CCeEEEEE
Q 005123 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS------AHKESVRDLSFC-RTDLKFCSCSD-DTTVKVWD 256 (713)
Q Consensus 185 h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~------~~~~~V~~l~fs-~dg~~Las~s~-Dg~I~iwD 256 (713)
+-..+.+++++++++++++...++.|.+||.+ ++.+..+. .+...+.+++++ .+++++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 44678999999999988888889999999987 44444442 233578899995 56655555433 88999999
Q ss_pred cCCCeeEEEEcc-CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc--cCCCCeEEEEEcCCCCEEEEEECC
Q 005123 257 FARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 257 l~~~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~--~h~~~I~si~fspdg~~Latgs~D 333 (713)
.+++.+..+.. +...+.+|+++++++++++...++.|++||.. ++.+..+. .+...+.+|+++++++++++.+.+
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 56666666643 34678999999999988877788999999965 56665553 344578999999999977777788
Q ss_pred CeEEEEECCCCeeEEEeecC--CCCeEEEEEeCCCCCEEEEEECCC-cEEEEEcCCCCceEEEecccC--CCeEEEEEcC
Q 005123 334 QIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEYFVSGSLDG-SIFHWLVGHETPQVEIHNVHD--NTVWDLAWHP 408 (713)
Q Consensus 334 g~I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~~~~~lasgs~DG-~I~Iwd~~~~~~~~~~~~~h~--~~V~~l~~sp 408 (713)
+.|++||.. ++.+..+..+ ...+..|++++ +++++++...++ .|.+||.+ +. .+..+..+. ..+.++++++
T Consensus 185 ~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 185 HCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQ-LISALESKVKHAQCFDVALMD 260 (286)
T ss_dssp TEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SC-EEEEEEESSCCSCEEEEEEET
T ss_pred CEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-CC-EEEEEcccCCCCcceeEEECC
Confidence 999999985 5666666543 36789999999 678888888776 99999964 33 233333332 3478999999
Q ss_pred CCcEEEE-eCCcEEEEecCC
Q 005123 409 IGYLLCS-NDHTTKFWCRNR 427 (713)
Q Consensus 409 dg~~laS-~Dg~v~iWd~~~ 427 (713)
++.++++ .|++|+||++..
T Consensus 261 ~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 261 DGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp TTEEEEEETTTEEEEEECSC
T ss_pred CCcEEEECCCCeEEEEEccc
Confidence 9977765 789999998754
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=2.8e-17 Score=191.25 Aligned_cols=272 Identities=12% Similarity=0.015 Sum_probs=181.0
Q ss_pred EEEEc--cCCCE-EEEEEC-CCcEEEEeCC--CCceEEEEec-----cCCCEEEEEEccCCCEEEEEeCC----------
Q 005123 149 RVLWT--PTGRR-LITGSQ-SGEFTLWNGQ--SFNFEMILQA-----HDHAIRSMVWSHNDNWMVSGDDG---------- 207 (713)
Q Consensus 149 ~v~~s--pdg~~-Latgs~-dg~V~Iwd~~--t~~~~~~l~~-----h~~~V~sl~~spdg~~L~sgs~D---------- 207 (713)
...|+ |||++ |+.++. +..|++|++. +......+.. |...+.+++|++||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 45555 99998 776654 5667777776 3033445555 56788999999999999988876
Q ss_pred CcEEEEEcCC------Cceeeeec-cCCCCeeEEEEecCCCEEEEEECC--------CeEEEEEcC-CC---eeEEEEcc
Q 005123 208 GAIKYWQNNM------NNVKANKS-AHKESVRDLSFCRTDLKFCSCSDD--------TTVKVWDFA-RC---QEERSLTG 268 (713)
Q Consensus 208 G~I~vwdl~~------~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~D--------g~I~iwDl~-~~---~~~~~l~~ 268 (713)
..|++||+.+ ++.. .+. .+...+..++|++||++|+.++.+ ..|++||+. ++ +.......
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 5899999988 5544 344 555678889999999999987754 379999998 56 44444444
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEccCCCC--------eEEEEEcCCCCEEEEEECCCeEEE
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDS--LVKLWDAKSGRELCSFHGHKNM--------VLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg--~I~IwDl~t~~~~~~~~~h~~~--------I~si~fspdg~~Latgs~Dg~I~I 338 (713)
+...+.+++|++|++++++++.++ .|.+||+.+++....+..+... +.+++|+++++++++++. +.++|
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 578899999999999888888888 6777777666654433322222 567899999999999988 98888
Q ss_pred E--ECCCCeeEEEeecCCCCeEEE-EEeCCCCCEEEEEECCCc--EEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE
Q 005123 339 Y--DIRAMKELESFRGHRKDVTAL-AWHPFHEEYFVSGSLDGS--IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 339 w--Dl~t~~~l~~~~~h~~~V~sl-~fsp~~~~~lasgs~DG~--I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 413 (713)
| |+.+++ +..+..+...+..+ +++. +.-++++++.+.. |++||+.++. ...+...+...+....+.....+.
T Consensus 319 ~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~-~~~l~~~~~~~~~~~~~~~~~~~~ 395 (662)
T 3azo_A 319 GILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYEVVELDTVTGR-ARTIGARHTDPVDPAYYPEPQIRT 395 (662)
T ss_dssp EEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEEEEEEETTTCC-EEEEESCCCCSSCGGGSCCCEEEE
T ss_pred EEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCEEEEEECCCCc-eEEeecCCcccCCccccCcceEEE
Confidence 8 665555 67777777778777 5543 2333444555544 4555554443 333333343333333333333333
Q ss_pred EE--eCCcEEEEec
Q 005123 414 CS--NDHTTKFWCR 425 (713)
Q Consensus 414 aS--~Dg~v~iWd~ 425 (713)
.. .+..|..|-+
T Consensus 396 ~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 396 FTAPDGREIHAHIY 409 (662)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEcCCCCEEEEEEE
Confidence 32 2335655654
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=9.3e-17 Score=173.41 Aligned_cols=256 Identities=11% Similarity=-0.005 Sum_probs=182.7
Q ss_pred EEEeCCCCceEEEEeccCCCEEE-----EEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeccCCCCeeEEEEecCC
Q 005123 169 TLWNGQSFNFEMILQAHDHAIRS-----MVWSHNDNWMVSGDD-GG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (713)
Q Consensus 169 ~Iwd~~t~~~~~~l~~h~~~V~s-----l~~spdg~~L~sgs~-DG--~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg 240 (713)
..+|..++..+..+..|...+.. .+|+|||++|+.++. ++ .|.+||+.+++.......+...+.++.|++|+
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 34577788888888888777766 889999999998887 66 48888999988877766666666678899999
Q ss_pred CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEE--EcCCCCEEEEEe----------------------CCCcEEE
Q 005123 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD--WHPTKSLLVSGG----------------------KDSLVKL 296 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~--~spdg~~L~sgs----------------------~Dg~I~I 296 (713)
+.|+.++.++.|++||+.+++....+..+...+.... +++++++++... .+..|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 9999999999999999999887776666665554444 488999887532 3467999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcC-CCCEEEEEECC------CeEEEEECCCCeeEEEeecCC--CCeEEEEEeCCCC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKD------QIIKLYDIRAMKELESFRGHR--KDVTALAWHPFHE 367 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~D------g~I~IwDl~t~~~l~~~~~h~--~~V~sl~fsp~~~ 367 (713)
||+.+++... +..+...+..++|+| ||++|+.+..+ ..|+++|+.+++. ..+..+. ..+..++|+| ++
T Consensus 173 ~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~sp-dg 249 (388)
T 3pe7_A 173 VDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVP-DG 249 (388)
T ss_dssp EETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECT-TS
T ss_pred EECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECC-CC
Confidence 9999886544 444667799999999 99999887753 3788888876544 3343343 3578899999 55
Q ss_pred CEE-EEEECCC----cEEEEEcCCCCceEE-EecccCC---CeEEEEEcCCCcEEE-----------EeCCcEEEEecCC
Q 005123 368 EYF-VSGSLDG----SIFHWLVGHETPQVE-IHNVHDN---TVWDLAWHPIGYLLC-----------SNDHTTKFWCRNR 427 (713)
Q Consensus 368 ~~l-asgs~DG----~I~Iwd~~~~~~~~~-~~~~h~~---~V~~l~~spdg~~la-----------S~Dg~v~iWd~~~ 427 (713)
+.| +++..++ .|++||+.++..... ....+.. ....++|++||..|+ ..+..|++||++.
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 544 4443322 399999987653221 1111000 011236899986554 2356888888765
No 176
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.77 E-value=3.5e-17 Score=192.36 Aligned_cols=271 Identities=8% Similarity=-0.102 Sum_probs=184.3
Q ss_pred ccCCCEEEEEECCC-----cEEEEeCCCCceEEEEe------ccCCCEEEEEEccCCCEEEEE-----eCCCcEEEEEcC
Q 005123 153 TPTGRRLITGSQSG-----EFTLWNGQSFNFEMILQ------AHDHAIRSMVWSHNDNWMVSG-----DDGGAIKYWQNN 216 (713)
Q Consensus 153 spdg~~Latgs~dg-----~V~Iwd~~t~~~~~~l~------~h~~~V~sl~~spdg~~L~sg-----s~DG~I~vwdl~ 216 (713)
+++|++++....++ .|++.+...++....+. +|...+.+++|||||++|+.+ +.+..|++||++
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 36888888776543 34555555554443332 244478999999999999843 344689999999
Q ss_pred CCcee-eeeccCCCCeeEEEEecCCCEEEEEECCCe-------------EEEEEcCCCee--EEEE--ccCCCceEEEEE
Q 005123 217 MNNVK-ANKSAHKESVRDLSFCRTDLKFCSCSDDTT-------------VKVWDFARCQE--ERSL--TGHGWDVKSVDW 278 (713)
Q Consensus 217 ~~~~~-~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~-------------I~iwDl~~~~~--~~~l--~~h~~~V~sl~~ 278 (713)
+++.+ ... ........++|++|++.|+.++.|.. |++|++.++.. ...+ ..+...+.++.|
T Consensus 156 tg~~~~~~~-~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 156 SGEWSKVDV-IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp TCCBCSSCC-BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCCCcCCcc-cCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 98865 211 11112268999999999999998776 99999987752 2233 234467899999
Q ss_pred cCCCCEEEEEeCCC----cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCee---E
Q 005123 279 HPTKSLLVSGGKDS----LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK----DQIIKLYDIRAMKE---L 347 (713)
Q Consensus 279 spdg~~L~sgs~Dg----~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~----Dg~I~IwDl~t~~~---l 347 (713)
++||++|++++.++ .|++||..+++. ..+..+...+....| ++|+ |+..+. ++.|++||+.+++. .
T Consensus 235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 311 (695)
T 2bkl_A 235 SRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWK 311 (695)
T ss_dssp CTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCE
T ss_pred CCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCe
Confidence 99999998887666 677887665543 344445555666666 5666 554443 57899999987653 2
Q ss_pred EEeecC-CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEeccc-CCCeEEEEEcCCCcEEE----E--eCCc
Q 005123 348 ESFRGH-RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLC----S--NDHT 419 (713)
Q Consensus 348 ~~~~~h-~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~la----S--~Dg~ 419 (713)
..+..+ ...|..++|+ ++.++++...|+..+||.++........+..+ .+.|..+++++++..++ + ..++
T Consensus 312 ~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 312 EIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred EEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 333333 4457888887 57889999999998888765333333333333 56788889999885443 2 5578
Q ss_pred EEEEecCCCC
Q 005123 420 TKFWCRNRPG 429 (713)
Q Consensus 420 v~iWd~~~~~ 429 (713)
|++||++...
T Consensus 390 v~~~d~~~g~ 399 (695)
T 2bkl_A 390 IYKTSVSTGK 399 (695)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999986544
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=1.5e-16 Score=168.62 Aligned_cols=274 Identities=8% Similarity=0.073 Sum_probs=196.7
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
..|.+++|++++..++..+.++.+++| ..+....+..+...+.+++|++++++++++..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 346778889888877777888899999 34556667777788899999999998888888999999999888766554
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECC----CeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeC------CC
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGK------DS 292 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~D----g~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~------Dg 292 (713)
..+...+.+++++++++++++...+ +.|.+||.++++....+. .....+.+++++++++++++... ++
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 4566789999999999888777666 689999998776543333 24457999999999987776653 35
Q ss_pred cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCC-CeeEEE--------eecCCCCeEEEEE
Q 005123 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRA-MKELES--------FRGHRKDVTALAW 362 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t-~~~l~~--------~~~h~~~V~sl~f 362 (713)
.|..||.++++... +......+..++|++++++|+++ +.++.|++||+++ ++.+.. +..+ ..+..+++
T Consensus 163 ~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~ 240 (333)
T 2dg1_A 163 GVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCI 240 (333)
T ss_dssp EEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEE
T ss_pred eEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEE
Confidence 67777766554433 22233458899999999876655 4578999999963 332221 1122 46788999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC------CeEEEEEcCCC-cEE-EEeCC----cEEEEecC
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN------TVWDLAWHPIG-YLL-CSNDH----TTKFWCRN 426 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~------~V~~l~~spdg-~~l-aS~Dg----~v~iWd~~ 426 (713)
++ +++++++...++.|.+||.+ +. .+..+..+.. .+.+++|++|+ .+. ++.++ ...||.++
T Consensus 241 d~-~G~l~v~~~~~~~v~~~d~~-g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 241 DS-DDNLYVAMYGQGRVLVFNKR-GY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp BT-TCCEEEEEETTTEEEEECTT-SC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred CC-CCCEEEEEcCCCEEEEECCC-CC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEe
Confidence 98 67888888888999999983 33 3333332322 68999999987 333 34442 34555554
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=7.2e-16 Score=164.07 Aligned_cols=240 Identities=12% Similarity=0.068 Sum_probs=183.5
Q ss_pred CCCEEEEEEccCCCEEEEEeCC------------------------CcEEEEEcCCCceeeeec-cCCCCeeEEEEecCC
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDG------------------------GAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTD 240 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~D------------------------G~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg 240 (713)
-+.+.+|+++++|+++++...+ +.|.+||..+++++..+. .+......+++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3578999999999988887776 479999999888776553 344578999999999
Q ss_pred CEEEEEECCCeEEEEEcCCCe-eEEEE---------ccCCCceEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCceEEEE
Q 005123 241 LKFCSCSDDTTVKVWDFARCQ-EERSL---------TGHGWDVKSVDWHP-TKSLLVSGG-KDSLVKLWDAKSGRELCSF 308 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~-~~~~l---------~~h~~~V~sl~~sp-dg~~L~sgs-~Dg~I~IwDl~t~~~~~~~ 308 (713)
+++++...++.|++||..... .+..+ ..+......|++++ +++++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986542 44554 23445789999999 788777776 689999999 557777766
Q ss_pred ccC----------CCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeeEEEee--cCCCCeEEEEEeCCCCCEEEEEE-
Q 005123 309 HGH----------KNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFHEEYFVSGS- 374 (713)
Q Consensus 309 ~~h----------~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~~~l~~~~--~h~~~V~sl~fsp~~~~~lasgs- 374 (713)
... ......|+++++ ++++++...++.|++||..+++.+..+. .+...+.+++|+| +.++++.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCC
Confidence 422 234889999998 6766777788999999999888888874 4556789999988 33333332
Q ss_pred ------CCCcEEEEEcCCCCceEEEe--cccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 375 ------LDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 375 ------~DG~I~Iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
.+..|++||+.++.....+. ..+...+.+|+++++|.++++ .++.|++|+++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 34589999998776444332 356677999999999977666 7899999998643
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=4.1e-16 Score=168.59 Aligned_cols=248 Identities=9% Similarity=0.058 Sum_probs=173.5
Q ss_pred CCCEEEEEE------CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC----------CCcEEEEEcCCC
Q 005123 155 TGRRLITGS------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD----------GGAIKYWQNNMN 218 (713)
Q Consensus 155 dg~~Latgs------~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~----------DG~I~vwdl~~~ 218 (713)
+++++++.. .|+.|++||..+++.+..+..+... .++|++|+++|++++. ++.|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455666554 3679999999999988888776554 8999999999998863 578999999998
Q ss_pred ceeeeeccC------CCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCC-CEEEEE
Q 005123 219 NVKANKSAH------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTK-SLLVSG 288 (713)
Q Consensus 219 ~~~~~~~~~------~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg-~~L~sg 288 (713)
+.+..+... ......++|++|+++|+++.. +++|.+||+.+++.+.. +... . ...+.+.+++ ..+++.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEE
Confidence 887766432 345778999999999998874 58999999999988776 4321 1 1112333322 233333
Q ss_pred eCCCc------------------------------------------------EEEEECCCCceE--EEEccC------C
Q 005123 289 GKDSL------------------------------------------------VKLWDAKSGREL--CSFHGH------K 312 (713)
Q Consensus 289 s~Dg~------------------------------------------------I~IwDl~t~~~~--~~~~~h------~ 312 (713)
+.||. |.++|+...... ..+... .
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~ 249 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAK 249 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHT
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccc
Confidence 44444 444444322111 111000 0
Q ss_pred ----CCeEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 313 ----NMVLCVKWNQNGNWVLTASK-----------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 313 ----~~I~si~fspdg~~Latgs~-----------Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
.....++|+++++.++++.. ++.|.+||+.+++.+.++..+. +.+++|++ ++++|++++. +
T Consensus 250 ~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~ 325 (361)
T 2oiz_A 250 NWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-G 325 (361)
T ss_dssp TCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-S
T ss_pred ccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-C
Confidence 00112688999888887654 3489999999999999998877 99999999 6778887776 9
Q ss_pred cEEEEEcCCC--CceEEEecccCCCeEEEEEcCCCc
Q 005123 378 SIFHWLVGHE--TPQVEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 378 ~I~Iwd~~~~--~~~~~~~~~h~~~V~~l~~spdg~ 411 (713)
.|.+||..+. +. +..+..+......++++|+|.
T Consensus 326 ~v~v~D~~t~~l~~-~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 326 NVNVYDISQPEPKL-LRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEECSSSSCEE-EEEETTSCSSEEEEEECCCSC
T ss_pred eEEEEECCCCccee-eEEeccCCCCcEEEEecCCCC
Confidence 9999999887 43 333334567788999999974
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.75 E-value=4.1e-16 Score=162.72 Aligned_cols=237 Identities=8% Similarity=0.023 Sum_probs=177.2
Q ss_pred CCCCceEEEEEccCCC-EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 142 KNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.+.....+++|+++++ +++++..++.|++||..++ ...+..+...+.+++++++++++++...++.|.+||..+++.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 4566788999999998 7778888999999999887 566777788899999999999887777778999999988775
Q ss_pred eeeecc----CCCCeeEEEEecCCCEEEEEEC-----------------CCeEEEEEcCCCeeEEEEccCCCceEEEEEc
Q 005123 221 KANKSA----HKESVRDLSFCRTDLKFCSCSD-----------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (713)
Q Consensus 221 ~~~~~~----~~~~V~~l~fs~dg~~Las~s~-----------------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~s 279 (713)
...... ....+.+++++++++++++.+. .+.|..+|.. ++ ...+..+......++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEEC
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEEC
Confidence 543322 1235678999999998887321 3456666654 33 34445566778999999
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CCce---EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC
Q 005123 280 PTKSLLVSGGKDSLVKLWDAK-SGRE---LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 355 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~-t~~~---~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~ 355 (713)
++++.|++.+.++.|++||++ +++. ...+..+...+.+++++++|+++++. ++.|.+||.. ++.+..+..+..
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~ 257 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT 257 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC
Confidence 999988777778999999997 4544 23333345567789999999866655 8899999987 778888887777
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
+++++|...+++.|++++.+ .|..++.++.
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred -ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 99999953267777777766 4444555443
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=3.6e-16 Score=184.05 Aligned_cols=245 Identities=11% Similarity=0.025 Sum_probs=180.6
Q ss_pred CCCCceEEEEEccCCCEEEEEECCC-----cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc-------
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSG-----EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA------- 209 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg-----~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~------- 209 (713)
+|...+..++|||||++||.+..++ .|+|||+.+++.+.....+ ..+.+++|++|++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3555789999999999999776543 8999999998876543322 23678999999999998887766
Q ss_pred ---------EEEEEcCCCce----eeeeccCCCCeeEEEEecCCCEEEEEEC-----CCeEEEEEcCC------Ce-eEE
Q 005123 210 ---------IKYWQNNMNNV----KANKSAHKESVRDLSFCRTDLKFCSCSD-----DTTVKVWDFAR------CQ-EER 264 (713)
Q Consensus 210 ---------I~vwdl~~~~~----~~~~~~~~~~V~~l~fs~dg~~Las~s~-----Dg~I~iwDl~~------~~-~~~ 264 (713)
|++|++.++.. +.....+...+..+.|++|+++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 99999988752 2222224556789999999999888765 56899999976 43 355
Q ss_pred EEccCCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCc--eEEEEccCCC--CeEEEEEcCCCCEEEEEECCCe-
Q 005123 265 SLTGHGWDVKSVDWHPTKSLLVSGGKD----SLVKLWDAKSGR--ELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQI- 335 (713)
Q Consensus 265 ~l~~h~~~V~sl~~spdg~~L~sgs~D----g~I~IwDl~t~~--~~~~~~~h~~--~I~si~fspdg~~Latgs~Dg~- 335 (713)
.+..+...+.. .|+++++.|+..+.+ ..|.+||+.++. ....+..+.. .+..++|++++.++++...|+.
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 56656655655 478888888777653 359999998764 2344444433 6888999877777788888874
Q ss_pred -EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC---CCcEEEEEcCCCC
Q 005123 336 -IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHET 388 (713)
Q Consensus 336 -I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~---DG~I~Iwd~~~~~ 388 (713)
|++||+.+++.+..+..+...|..+++++++..++++.+. .++|++||+.++.
T Consensus 360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6677887788778888777888999999844445555444 4689999997765
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=3.1e-16 Score=166.73 Aligned_cols=223 Identities=10% Similarity=0.068 Sum_probs=161.6
Q ss_pred CceEEEEEccCCCEEEEEECC---C--cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC------------
Q 005123 145 CSINRVLWTPTGRRLITGSQS---G--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG------------ 207 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~d---g--~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D------------ 207 (713)
..+.+++|||||++||+++.+ + .|++||+.+++.......+ . +.+++|++|++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 457899999999999988754 2 3888899887765554443 4 9999999999998877632
Q ss_pred ---------------CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC-------eEEEEEcCCCeeEEE
Q 005123 208 ---------------GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-------TVKVWDFARCQEERS 265 (713)
Q Consensus 208 ---------------G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg-------~I~iwDl~~~~~~~~ 265 (713)
..|.+||+.+++.+..+.. . .+..++|++|+ ++++++.+. ...||.+.+++. ..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence 5789999998876344444 3 88999999999 777776542 334444435443 33
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceEEEEccCCCCeEE-EEEcCCCCEEEEEECCCeE
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAKSGRELCSFHGHKNMVLC-VKWNQNGNWVLTASKDQII 336 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~D--------g~I~IwDl~t~~~~~~~~~h~~~I~s-i~fspdg~~Latgs~Dg~I 336 (713)
+..+ ..+.++ +++|++|++++.+ ..|.+|| +++....+..+...+.. +.|+ |+ ++++++.++.+
T Consensus 213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 4334 455544 8999988887754 3688888 55544444555677886 9999 88 88899999999
Q ss_pred EEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE-EEEEcC
Q 005123 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI-FHWLVG 385 (713)
Q Consensus 337 ~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I-~Iwd~~ 385 (713)
+|| +.+++... +..+...|.+++|++ .++++++.++.. .||.++
T Consensus 286 ~l~-~~~g~~~~-~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IWDGEIKP-IAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEE-EESSSEEE-EECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEE-EcCCceEE-EecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999 87665543 444577899999987 677788777765 778776
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.73 E-value=5.2e-16 Score=158.87 Aligned_cols=241 Identities=9% Similarity=-0.037 Sum_probs=175.2
Q ss_pred ceEEEEEccCCCEEE-EEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 146 SINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 146 ~V~~v~~spdg~~La-tgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
...++++++++++++ +.+.++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||.+........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999999666 446788999999766543322223345788999999988665555 889999998776544332
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~ 304 (713)
......+.+++++++++++++...++.|.+||..+.............+.+|+++++++++++...++.|.+||..+...
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 23336789999999998777777788999998765443332223334688999999999777777788999999887665
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 305 ~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
..........+.+|+++++|+++++...++.|.+||............+...+.++++++ +++++++...++.|++|++
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECC
T ss_pred EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcC
Confidence 443333346789999999997777777788999999976544332223346789999998 6788889889999999998
Q ss_pred CCCC
Q 005123 385 GHET 388 (713)
Q Consensus 385 ~~~~ 388 (713)
....
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 6543
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.72 E-value=6.7e-15 Score=155.72 Aligned_cols=235 Identities=9% Similarity=0.018 Sum_probs=171.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC----CcEEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQ 214 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D----G~I~vwd 214 (713)
.+..+...+.+++|++++++++++..++.|++||..+++.......+...+.+++|+++++++++...+ +.|.+||
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence 345666778999999999987888889999999999887766555567889999999999988877666 6899999
Q ss_pred cCCCceeeeec--cCCCCeeEEEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 215 NNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 215 l~~~~~~~~~~--~~~~~V~~l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
.+++.....+. .....+.+++++++++++++... ++.|..||..+++... +......+..++|+++++.|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLW 197 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEE
Confidence 98876553332 24457899999999987776654 3566677765544433 222334688999999998665
Q ss_pred EE-eCCCcEEEEECCC-CceEEEE-----ccC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC--
Q 005123 287 SG-GKDSLVKLWDAKS-GRELCSF-----HGH--KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK-- 355 (713)
Q Consensus 287 sg-s~Dg~I~IwDl~t-~~~~~~~-----~~h--~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~-- 355 (713)
++ +.++.|.+||+++ ++.+..+ ... ...+..++++++|+++++...++.|.+||. +++.+..+..+..
T Consensus 198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~ 276 (333)
T 2dg1_A 198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE 276 (333)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred EEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcc
Confidence 54 5578999999964 3333211 111 146788999999998888878899999998 4666766665443
Q ss_pred ----CeEEEEEeCCCCCEEEEEECC
Q 005123 356 ----DVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 356 ----~V~sl~fsp~~~~~lasgs~D 376 (713)
.+.+++|++ ++..|+.++.+
T Consensus 277 g~~~~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 277 GHMLRSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp TCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred ccccCcceEEECC-CCCEEEEEeCc
Confidence 689999998 45445444443
No 185
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.72 E-value=6.1e-14 Score=145.02 Aligned_cols=279 Identities=7% Similarity=-0.009 Sum_probs=198.8
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE-EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.+......+.+++++++|+++++...++.|.+||.. ++.... +......+.++++.++++++++...++.|.+||..
T Consensus 14 ~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 14 NLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred ecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 344556789999999999977777678999999988 554432 22234679999999999877777667899999987
Q ss_pred Cceeee-eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEE-EEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 218 NNVKAN-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 218 ~~~~~~-~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~-~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
++.... .......+.++++.++++++++...++.|..||.. ++... .+......+.+++++++++++++...++.|.
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 554322 22234678999999999888777778899999987 44432 2333456789999999999666666678899
Q ss_pred EEECCCCceEEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE-eecCCCCeEEEEEeCCCCCEEEEE
Q 005123 296 LWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 296 IwDl~t~~~~~~-~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~-~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
+||. +++.... .......+.+++++++++++++...++.|.+||. +++.... +......+.++++++ +++++++.
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~ 247 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTE 247 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CCCEEEec
Confidence 9998 5554432 2234457899999999987776666778999998 4443332 333456789999998 67777777
Q ss_pred ECCCcEEEEEcCCCCceEEE-ecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 374 SLDGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
..++.|.+||.. +. .... .......+.++++++++.+.++..+.|..++.
T Consensus 248 ~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~i~~~~p 298 (300)
T 2qc5_A 248 WGANQIGRITND-NT-IQEYQLQTENAEPHGITFGKDGSVWFALKCKIGKLNL 298 (300)
T ss_dssp TTTTEEEEECTT-SC-EEEEECCSTTCCCCCEEECTTSCEEEECSSEEEEEEE
T ss_pred cCCCeEEEECCC-Cc-EEEEECCccCCccceeEeCCCCCEEEEccCceEEeCC
Confidence 677899999983 32 2222 22234678999999999877764334544443
No 186
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=1.3e-16 Score=172.04 Aligned_cols=229 Identities=8% Similarity=0.081 Sum_probs=162.0
Q ss_pred EEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEE-------------------EEEccCCCEEEEE-----
Q 005123 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRS-------------------MVWSHNDNWMVSG----- 204 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~s-------------------l~~spdg~~L~sg----- 204 (713)
++.|++||++|++++.++.|++||+.+++.......+...... ++|+++++.++.+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 4789999999999999999999999988876666655443333 3567777766644
Q ss_pred eCCCcEEEEEcCCCceeeeeccCCCCeeEEEEec-CCCEEEEEECC------CeEEEEEcCCCeeEEEEccC--CCceEE
Q 005123 205 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDD------TTVKVWDFARCQEERSLTGH--GWDVKS 275 (713)
Q Consensus 205 s~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~D------g~I~iwDl~~~~~~~~l~~h--~~~V~s 275 (713)
..+..|.+||+.+++..... .+...+..+.|++ +++.|+.++.+ ..|.+||+..++.. .+..+ ...+..
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTH 242 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEE
T ss_pred CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccc
Confidence 35678999999988765544 4567889999999 78877776653 36889998765433 33322 235888
Q ss_pred EEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEccCCCCeEEEEEcC-CCCEEEEEE----------------CC
Q 005123 276 VDWHPTKSLLVSGGKD-----SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTAS----------------KD 333 (713)
Q Consensus 276 l~~spdg~~L~sgs~D-----g~I~IwDl~t~~~~~~~~~h~~~I~si~fsp-dg~~Latgs----------------~D 333 (713)
++|++++++|++++.+ +.|++||+.+++...... ... .. +.|++ ||++|++++ .+
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 9999999988777654 449999999887544332 222 33 89999 999888765 34
Q ss_pred CeEEEEECCCCeeEEEeecCCC-----------CeEEEEEeCCCCCEEEEEE-CCCcEEEEEc
Q 005123 334 QIIKLYDIRAMKELESFRGHRK-----------DVTALAWHPFHEEYFVSGS-LDGSIFHWLV 384 (713)
Q Consensus 334 g~I~IwDl~t~~~l~~~~~h~~-----------~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~ 384 (713)
..|++||+.+++.. .+..+.. .+..++|++ +++.|+.++ .++...||.+
T Consensus 320 ~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred CcEEEEecccCceE-EccCCCCccccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEE
Confidence 78999999887653 3433443 256788999 566666555 4565555544
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=4.4e-15 Score=154.84 Aligned_cols=243 Identities=11% Similarity=0.026 Sum_probs=173.7
Q ss_pred CceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEE
Q 005123 176 FNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (713)
Q Consensus 176 ~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~i 254 (713)
+..+..+..+.....+++|+++++ +++++..++.|.+||..++ ...+..+...+.+++++++++++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 334455656677889999999998 6778888899999999887 4555566778999999999998877777789999
Q ss_pred EEcCCCeeEEEEccC----CCceEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceEEEEccCCC
Q 005123 255 WDFARCQEERSLTGH----GWDVKSVDWHPTKSLLVSGGK-----------------DSLVKLWDAKSGRELCSFHGHKN 313 (713)
Q Consensus 255 wDl~~~~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~-----------------Dg~I~IwDl~t~~~~~~~~~h~~ 313 (713)
||..+++........ ...+.+++++++|+++++.+. .+.|..||.. ++ +..+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCC
Confidence 999777654433221 235678999999998887321 3456666655 43 444455666
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECC-CCee---EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMKE---LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~Dg~I~IwDl~-t~~~---l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
....++|++++++|++.+.++.|++||+. +++. ...+..+...+..+++++ +++++++. ++.|.+||.+ +.
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~- 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD-GD- 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT-SC-
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC-CC-
Confidence 78999999999999777778999999997 4543 333333455678899998 67766666 7899999985 33
Q ss_pred eEEEecccCCCeEEEEE-cCCCcEE-EEeCCcEEEEecCCCCC
Q 005123 390 QVEIHNVHDNTVWDLAW-HPIGYLL-CSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 390 ~~~~~~~h~~~V~~l~~-spdg~~l-aS~Dg~v~iWd~~~~~~ 430 (713)
.+..+..+.. +++++| .+++..| ++..+ .+|.++....
T Consensus 248 ~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~--~l~~~~~~~~ 287 (296)
T 3e5z_A 248 ELGRVLTPQT-TSNLCFGGPEGRTLYMTVST--EFWSIETNVR 287 (296)
T ss_dssp EEEEEECSSC-CCEEEEESTTSCEEEEEETT--EEEEEECSCC
T ss_pred EEEEEECCCC-ceeEEEECCCCCEEEEEcCC--eEEEEEcccc
Confidence 4444555566 999999 5777544 44444 4555544433
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.70 E-value=7.1e-15 Score=152.88 Aligned_cols=213 Identities=9% Similarity=0.032 Sum_probs=174.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccC-CCCee
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH-KESVR 232 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~-~~~V~ 232 (713)
.+++|++++.|+.|++||.++++.+.++..+. ..+.++.++++|++|+ +.++.|..||. +++.+..+... ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999999999999998776 5789999999999888 45788999999 78888877764 35788
Q ss_pred EEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEEEEcc------CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 005123 233 DLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTG------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~~l~~------h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~ 305 (713)
++.+.+++++|++.+. ++.|..+|. +++.+..+.. +......+++.+++++|++...++.|.+||.+ ++.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 778888885 6666665542 11245567788999999999999999999998 9999
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC------CCeEEEEEeCCCCCEEEEEE
Q 005123 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR------KDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 306 ~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~------~~V~sl~fsp~~~~~lasgs 374 (713)
.++... ....++.+.++|++|++++.++.|..+|..+++.+.++.... ..+..++..+ +++++++..
T Consensus 159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v~~~ 231 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYICNW 231 (276)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEEEEE
T ss_pred EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEEEEec
Confidence 888754 456678888999999999888899999999999999886432 2367788877 677776664
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=9.4e-15 Score=155.58 Aligned_cols=254 Identities=8% Similarity=0.013 Sum_probs=185.1
Q ss_pred CCcEEEEeCCCCceEEEEe------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEec
Q 005123 165 SGEFTLWNGQSFNFEMILQ------AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR 238 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l~------~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~ 238 (713)
++.|.+||.++++....+. ........+++. +++++++...++.|.+||..+++.+..+. .......+++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 7899999999988765431 122456778774 44555566667999999999999887774 356789999988
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-----CceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEccC
Q 005123 239 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGG--KDSLVKLWDAKSGRELCSFHGH 311 (713)
Q Consensus 239 dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-----~~V~sl~~spdg~~L~sgs--~Dg~I~IwDl~t~~~~~~~~~h 311 (713)
+++.+++...++.|.+||..+++.+..+.... .....+++ +++.|+++. .++.|.+||+++++.+.++..
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~- 170 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI- 170 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-
Confidence 88544444389999999999998877665332 15667777 355555555 488999999999988877764
Q ss_pred CCCeEEEEEcCCCCEEEEEECC----------CeEEEEECCCCeeEEEeecC-CCCeEEEEEeCCCCCEEEEEECCCcEE
Q 005123 312 KNMVLCVKWNQNGNWVLTASKD----------QIIKLYDIRAMKELESFRGH-RKDVTALAWHPFHEEYFVSGSLDGSIF 380 (713)
Q Consensus 312 ~~~I~si~fspdg~~Latgs~D----------g~I~IwDl~t~~~l~~~~~h-~~~V~sl~fsp~~~~~lasgs~DG~I~ 380 (713)
......++++++|++++++..+ +.|.+||..+++.+..+... ......++|++ ++++|+++.. .|.
T Consensus 171 g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~ 247 (328)
T 3dsm_A 171 GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIW 247 (328)
T ss_dssp SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEE
T ss_pred CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEE
Confidence 3446789999999877766554 78999999999887777543 34689999999 5666666544 899
Q ss_pred EEEcCCCCceEE-EecccCCCeEEEEEcC-CCcEEEEe------CCcEEEEecC
Q 005123 381 HWLVGHETPQVE-IHNVHDNTVWDLAWHP-IGYLLCSN------DHTTKFWCRN 426 (713)
Q Consensus 381 Iwd~~~~~~~~~-~~~~h~~~V~~l~~sp-dg~~laS~------Dg~v~iWd~~ 426 (713)
+||..+.+.... +..........+++++ ++.+.++. ++.|.+|+.+
T Consensus 248 ~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 248 RMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 999977654211 1111246789999998 56666554 6889999875
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=1.2e-14 Score=154.64 Aligned_cols=239 Identities=10% Similarity=-0.019 Sum_probs=178.1
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeee
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~ 224 (713)
....+++. +++++++...++.|.+||..+++.+.++. .......++++++++ |+++. .++.|.+||..++++...+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEE
Confidence 45667663 34445555567899999999999988885 356789999988884 55554 8899999999999877665
Q ss_pred ccCC-----CCeeEEEEecCCCEEEEEE--CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC------
Q 005123 225 SAHK-----ESVRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD------ 291 (713)
Q Consensus 225 ~~~~-----~~V~~l~fs~dg~~Las~s--~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D------ 291 (713)
.... .....+++ ++..|++++ .+++|.+||+++++.+..+.. ......+++++++++++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCcc
Confidence 4322 15567777 455555555 488999999999988877764 3456789999999877766554
Q ss_pred ----CcEEEEECCCCceEEEEccC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE--eecCCCCeEEEEEeC
Q 005123 292 ----SLVKLWDAKSGRELCSFHGH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES--FRGHRKDVTALAWHP 364 (713)
Q Consensus 292 ----g~I~IwDl~t~~~~~~~~~h-~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~--~~~h~~~V~sl~fsp 364 (713)
+.|.+||.++++.+..+... ......++|++++++|+++.. .|.+||..+++.... +.........+++++
T Consensus 199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP 276 (328)
T ss_dssp CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence 78999999998877666532 346899999999999988765 899999988775321 221246789999998
Q ss_pred CCCCEEEEE----ECCCcEEEEEcCCCCceEEE
Q 005123 365 FHEEYFVSG----SLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 365 ~~~~~lasg----s~DG~I~Iwd~~~~~~~~~~ 393 (713)
++++++++. ..++.|.+||.+ ++.+..+
T Consensus 277 ~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 277 NNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp TTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred CCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 677788877 678899999986 5433333
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.69 E-value=2.6e-16 Score=184.88 Aligned_cols=242 Identities=10% Similarity=-0.034 Sum_probs=170.1
Q ss_pred CCCCceEEEEEccCCCEEEEEE-----CCCcEEEEeCCCCceEEEEeccCCCE--EEEEEccCCCEEEEEeCCCc-----
Q 005123 142 KNRCSINRVLWTPTGRRLITGS-----QSGEFTLWNGQSFNFEMILQAHDHAI--RSMVWSHNDNWMVSGDDGGA----- 209 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs-----~dg~V~Iwd~~t~~~~~~l~~h~~~V--~sl~~spdg~~L~sgs~DG~----- 209 (713)
+|...+.+++|||||++||.+. .+..|+|||+.+++.+. ..+...+ .+++|++||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 5666899999999999999543 34689999999987641 1122222 68999999999999988776
Q ss_pred --------EEEEEcCCCc----eeeeeccCCCCeeEEEEecCCCEEEEEECCC----eEEEEEcCCCeeEEEEccCCCce
Q 005123 210 --------IKYWQNNMNN----VKANKSAHKESVRDLSFCRTDLKFCSCSDDT----TVKVWDFARCQEERSLTGHGWDV 273 (713)
Q Consensus 210 --------I~vwdl~~~~----~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg----~I~iwDl~~~~~~~~l~~h~~~V 273 (713)
|++|++.++. ++.....+...+.++.|++|+++|+.++.++ .|++||..+++ ...+..+...+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence 9999998875 2333334456789999999999998877665 67777765554 34444455566
Q ss_pred EEEEEcCCCCEEEEEe---CCCcEEEEECCCCce---EEEEccC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCe
Q 005123 274 KSVDWHPTKSLLVSGG---KDSLVKLWDAKSGRE---LCSFHGH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMK 345 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs---~Dg~I~IwDl~t~~~---~~~~~~h-~~~I~si~fspdg~~Latgs~Dg~I~IwDl~-t~~ 345 (713)
....| +++++++++. .++.|.+||+++++. ...+..+ ...+..++|+ ++.++++...|+..+||.+. +++
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 66667 4555444443 257899999987653 3333333 4568888998 67788888899988887654 455
Q ss_pred eEEEeecC-CCCeEEEEEeCCCCCEEEEEEC---CCcEEEEEcCCCC
Q 005123 346 ELESFRGH-RKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHET 388 (713)
Q Consensus 346 ~l~~~~~h-~~~V~sl~fsp~~~~~lasgs~---DG~I~Iwd~~~~~ 388 (713)
.+..+..+ ...|..+++++++..++++.+. .++|++||+.++.
T Consensus 353 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 353 PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 66666655 5667888899844444444443 4679999997765
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=9.8e-14 Score=158.60 Aligned_cols=281 Identities=12% Similarity=0.111 Sum_probs=203.6
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCC--CCceEEEEeccCCCEEEEEEc----cCCCEEEEEeC-CCcEEEEEcCC
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWS----HNDNWMVSGDD-GGAIKYWQNNM 217 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~--t~~~~~~l~~h~~~V~sl~~s----pdg~~L~sgs~-DG~I~vwdl~~ 217 (713)
..+..++|++||++|++++.|+.|.+||+. +.+.+..+... .....++|+ +||+++++++. ++.|.|+|..+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 357799999999999999999999999995 78888777753 346799999 69999887765 59999999999
Q ss_pred CceeeeeccC-----------CCCeeEEEEecCCCEEE-EEECCCeEEEEEcCCCeeE--EEEccCCCceEEEEEcCCCC
Q 005123 218 NNVKANKSAH-----------KESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEE--RSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 218 ~~~~~~~~~~-----------~~~V~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~--~~l~~h~~~V~sl~~spdg~ 283 (713)
.+.+..+... ...+..+.+++++..++ ....+|.|.++|..+.+.+ ..+ .......++.|+++++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHR 354 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSC
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCC
Confidence 8887765422 12677888888766544 4455799999999775432 222 2345677899999999
Q ss_pred EEEEEe-CCCcEEEEECCCCceEEEEcc-----CCCCeEEEEEcCCCCEEE-EEE-CCCeEEEEECCC-------CeeEE
Q 005123 284 LLVSGG-KDSLVKLWDAKSGRELCSFHG-----HKNMVLCVKWNQNGNWVL-TAS-KDQIIKLYDIRA-------MKELE 348 (713)
Q Consensus 284 ~L~sgs-~Dg~I~IwDl~t~~~~~~~~~-----h~~~I~si~fspdg~~La-tgs-~Dg~I~IwDl~t-------~~~l~ 348 (713)
+|++++ .+++|.++|+++++.+..+.. |.+....+ +++++..++ ++. .+++|.++|..+ ++.+.
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence 887766 578899999999988776653 22112122 577755554 443 468999999988 77888
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEEC-------CCcEEEEEcCCC-----CceEEEecc--------cCCCeEEEEEcC
Q 005123 349 SFRGHRKDVTALAWHPFHEEYFVSGSL-------DGSIFHWLVGHE-----TPQVEIHNV--------HDNTVWDLAWHP 408 (713)
Q Consensus 349 ~~~~h~~~V~sl~fsp~~~~~lasgs~-------DG~I~Iwd~~~~-----~~~~~~~~~--------h~~~V~~l~~sp 408 (713)
++......-..++.+| ++++|.+... ..+|.|+|+.+. ...+..+.. ....+..+.|++
T Consensus 434 ~i~~~g~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 434 SFPALGGGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp EEECSCSCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred EEecCCCCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 8876554445678899 6666666552 359999999766 333233321 235789999999
Q ss_pred CCcEE-EE-e-----CCcEEEEecCCCC
Q 005123 409 IGYLL-CS-N-----DHTTKFWCRNRPG 429 (713)
Q Consensus 409 dg~~l-aS-~-----Dg~v~iWd~~~~~ 429 (713)
+|..+ +| . ++.|.|+|.....
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 99544 34 2 7999999875543
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=5.8e-15 Score=151.00 Aligned_cols=238 Identities=10% Similarity=-0.041 Sum_probs=170.7
Q ss_pred CEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE
Q 005123 188 AIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 188 ~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l 266 (713)
...++++++++++++ +...++.|.+||..+.............+.+++++++++++++.. ++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 778999999998766 446788999998766554333233345788999999988655555 889999998765433222
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee
Q 005123 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346 (713)
Q Consensus 267 ~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~ 346 (713)
......+.+++++++++++++...++.|.+||..+.............+.+++++++++++++...++.|.+||..+...
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 22336789999999999777777788999998766544332223334678999999999777766788999999987665
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 347 l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
......+...+.+|++++ ++.++++...++.|.+||...... ......+...+.++++++++.++++ .++.|++|+
T Consensus 184 ~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp EECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCC-EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred EeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcc-eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 443333446789999998 668888877888999999865433 2222233467899999999977665 789999998
Q ss_pred cCCC
Q 005123 425 RNRP 428 (713)
Q Consensus 425 ~~~~ 428 (713)
+...
T Consensus 262 ~~~~ 265 (270)
T 1rwi_B 262 SLEH 265 (270)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 7544
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.68 E-value=4.6e-15 Score=175.54 Aligned_cols=270 Identities=10% Similarity=0.010 Sum_probs=180.9
Q ss_pred cCCCEEEEEECCCc---EEEE--eCC---CCceEEEEe------ccCCCEEEEEEccCCCEEEEEeCC-----CcEEEEE
Q 005123 154 PTGRRLITGSQSGE---FTLW--NGQ---SFNFEMILQ------AHDHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQ 214 (713)
Q Consensus 154 pdg~~Latgs~dg~---V~Iw--d~~---t~~~~~~l~------~h~~~V~sl~~spdg~~L~sgs~D-----G~I~vwd 214 (713)
+||++++....++. -.|| +.. .++....+. +|...+..++|||||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78888887665432 3444 443 333333221 223468899999999999876543 3599999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCe--------------EEEEEcCCCee--EEEEcc--CCCceEEE
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT--------------VKVWDFARCQE--ERSLTG--HGWDVKSV 276 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~--------------I~iwDl~~~~~--~~~l~~--h~~~V~sl 276 (713)
+++++.+... .....+..++|++| +.|+.++.|+. |++|++.+... ...+.. +...+.++
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9999875532 22223467899999 99988887654 89999977652 223332 23358899
Q ss_pred EEcCCCCEEEEEeCCC-----cEEEEECCCC--ceEEEEccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCC-
Q 005123 277 DWHPTKSLLVSGGKDS-----LVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNGNWVLTASKD----QIIKLYDIRAM- 344 (713)
Q Consensus 277 ~~spdg~~L~sgs~Dg-----~I~IwDl~t~--~~~~~~~~h~~~I~si~fspdg~~Latgs~D----g~I~IwDl~t~- 344 (713)
.|++||++|+..+.++ .|++||+.++ +....+..+...+.... +++|+.|+..+.+ +.|++||+.++
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 9999999988877544 7999999877 41445544444455543 4889988887764 45999999874
Q ss_pred -eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc-cCCCeEEEEEcCCCcEEE----E--e
Q 005123 345 -KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPIGYLLC----S--N 416 (713)
Q Consensus 345 -~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~la----S--~ 416 (713)
+....+..+...+..++|+ ++.++++...|+..+||.++........+.. +.+.|..+++++++..++ + .
T Consensus 353 ~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 353 PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 3334444455556778887 5678889999998888766533333333333 356788999999874332 2 5
Q ss_pred CCcEEEEecCCC
Q 005123 417 DHTTKFWCRNRP 428 (713)
Q Consensus 417 Dg~v~iWd~~~~ 428 (713)
.++|.+||++..
T Consensus 431 P~~i~~~d~~tg 442 (741)
T 1yr2_A 431 PATVLALDPATA 442 (741)
T ss_dssp EEEEEEEETTTT
T ss_pred CCEEEEEECCCC
Confidence 578999988653
No 195
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.67 E-value=1.4e-14 Score=156.47 Aligned_cols=212 Identities=15% Similarity=0.182 Sum_probs=151.9
Q ss_pred EEEEccCCCEEEEEEC----------CCcEEEEeCCCCceEEEEecc------CCCEEEEEEccCCCEEEEEeC--CCcE
Q 005123 149 RVLWTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHNDNWMVSGDD--GGAI 210 (713)
Q Consensus 149 ~v~~spdg~~Latgs~----------dg~V~Iwd~~t~~~~~~l~~h------~~~V~sl~~spdg~~L~sgs~--DG~I 210 (713)
.++|++|+++|++++. ++.|.+||..+.+.+..+... ......++|++||++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 7999999999999873 567999999999988887643 245678999999999998874 5899
Q ss_pred EEEEcCCCceeee-eccCCCCeeEEEEecCC-CEEEEEEC----------------------------------------
Q 005123 211 KYWQNNMNNVKAN-KSAHKESVRDLSFCRTD-LKFCSCSD---------------------------------------- 248 (713)
Q Consensus 211 ~vwdl~~~~~~~~-~~~~~~~V~~l~fs~dg-~~Las~s~---------------------------------------- 248 (713)
.+||+.+++.+.. +.... ...+.+.+++ ..+++.+.
T Consensus 134 ~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK 211 (361)
T ss_dssp EEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred EEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence 9999999987766 43211 1112222222 22333333
Q ss_pred --------CCeEEEEEcCCCee--EEEEccCC----------CceEEEEEcCCCCEEEEEeC-----------CCcEEEE
Q 005123 249 --------DTTVKVWDFARCQE--ERSLTGHG----------WDVKSVDWHPTKSLLVSGGK-----------DSLVKLW 297 (713)
Q Consensus 249 --------Dg~I~iwDl~~~~~--~~~l~~h~----------~~V~sl~~spdg~~L~sgs~-----------Dg~I~Iw 297 (713)
++.|.+||+..... +..+.... .....++|+++++.++++.. ++.|.+|
T Consensus 212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi 291 (361)
T 2oiz_A 212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM 291 (361)
T ss_dssp SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence 34444455432211 11111000 01112788999888777653 3479999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eeEEEeecCCCCeEEEEEeCC
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--KELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~--~~l~~~~~h~~~V~sl~fsp~ 365 (713)
|+++++.+.++..+. +.+++|++||++|++++. +.|.|||..++ +.+.++..+......++++|+
T Consensus 292 D~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 292 DTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp ETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred ECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 999999999988766 999999999999998887 99999999999 999888777888899999994
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=1.9e-13 Score=156.21 Aligned_cols=272 Identities=11% Similarity=0.047 Sum_probs=197.6
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeeeeccCCCCe
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN--MNNVKANKSAHKESV 231 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~--~~~~~~~~~~~~~~V 231 (713)
+.+.++++...++.|.+||..+++.+.++.. ...+..+.|++|+++|++++.|+.|.+||+. +.+.+..+.. ....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence 3345566777789999999999999988874 3467799999999999999999999999996 7777766654 3456
Q ss_pred eEEEEe----cCCCEEEEEEC-CCeEEEEEcCCCeeEEEEccC-----------CCceEEEEEcCCCCEE-EEEeCCCcE
Q 005123 232 RDLSFC----RTDLKFCSCSD-DTTVKVWDFARCQEERSLTGH-----------GWDVKSVDWHPTKSLL-VSGGKDSLV 294 (713)
Q Consensus 232 ~~l~fs----~dg~~Las~s~-Dg~I~iwDl~~~~~~~~l~~h-----------~~~V~sl~~spdg~~L-~sgs~Dg~I 294 (713)
..++|+ +|++++++++. +++|.|+|..+.+.+..+... ...+..+..++++..+ +....+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 899999 69998887665 589999999998888776521 2267888888876654 444567999
Q ss_pred EEEECCCCceEEEE-ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeec-----CCCCeEEEEEeCCCC
Q 005123 295 KLWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG-----HRKDVTALAWHPFHE 367 (713)
Q Consensus 295 ~IwDl~t~~~~~~~-~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~-----h~~~V~sl~fsp~~~ 367 (713)
.++|..+.+.+... ........++.|++++++|++++ .++.|.++|+++++.+..+.. |.+.-..+ ++++.+
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g 401 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFG 401 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTE
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCC
Confidence 99999876433221 12345677899999999988766 578999999999998776654 32222222 577445
Q ss_pred CEEEEEE-CCCcEEEEEcCCC------CceEEEecccCCCeEEEEEcCCCcEEEE-e--------CCcEEEEecCCC
Q 005123 368 EYFVSGS-LDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPIGYLLCS-N--------DHTTKFWCRNRP 428 (713)
Q Consensus 368 ~~lasgs-~DG~I~Iwd~~~~------~~~~~~~~~h~~~V~~l~~spdg~~laS-~--------Dg~v~iWd~~~~ 428 (713)
.++++.. .+++|.++|.... .+.+..+......-..|..++++..+.. . .++|.|+|++..
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 5556554 4689999999762 2334444333333345778999976643 2 359999999765
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.66 E-value=5.8e-14 Score=146.73 Aligned_cols=240 Identities=10% Similarity=0.093 Sum_probs=173.6
Q ss_pred CCCceEEEEEccCCCEEEE-------EECCCcEEEEeCCCCceEEEEe----ccCCCEEEEEEccC-CCEEEEEeCCCcE
Q 005123 143 NRCSINRVLWTPTGRRLIT-------GSQSGEFTLWNGQSFNFEMILQ----AHDHAIRSMVWSHN-DNWMVSGDDGGAI 210 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Lat-------gs~dg~V~Iwd~~t~~~~~~l~----~h~~~V~sl~~spd-g~~L~sgs~DG~I 210 (713)
.-....+++|+++++++++ +..++.|++||..+++...... .+...+.+++++++ +++++ ++.++.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCE
Confidence 3446789999999988777 5778899999988877653322 24567999999998 55444 4445579
Q ss_pred EEEEcCCCceeee-ecc----CCCCeeEEEEecCCCEEEEEECC---------------CeEEEEEcCCCeeEEEEccCC
Q 005123 211 KYWQNNMNNVKAN-KSA----HKESVRDLSFCRTDLKFCSCSDD---------------TTVKVWDFARCQEERSLTGHG 270 (713)
Q Consensus 211 ~vwdl~~~~~~~~-~~~----~~~~V~~l~fs~dg~~Las~s~D---------------g~I~iwDl~~~~~~~~l~~h~ 270 (713)
.+||.+ ++.... ... ....+.+++++++++++++...+ +.|..||.. ++.... ..+.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCC
Confidence 999988 665433 221 12458899999999887776654 567777765 443332 2233
Q ss_pred CceEEEEEc----CCCCEEEEE-eCCCcEEEEECC-CCce-----EEEEccCC-CCeEEEEEcCCCCEEEEEECCCeEEE
Q 005123 271 WDVKSVDWH----PTKSLLVSG-GKDSLVKLWDAK-SGRE-----LCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 271 ~~V~sl~~s----pdg~~L~sg-s~Dg~I~IwDl~-t~~~-----~~~~~~h~-~~I~si~fspdg~~Latgs~Dg~I~I 338 (713)
.....++|+ ++++.|+++ ..++.|.+||++ +++. ...+..+. ..+..++++++|+++++...++.|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 457889999 998766555 467899999986 4432 22233333 56889999999998888888899999
Q ss_pred EECCCCeeEEEeecCCCCeEEEEEeCCCCC-EEEEEECCCcEEEEEcCCC
Q 005123 339 YDIRAMKELESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 339 wDl~t~~~l~~~~~h~~~V~sl~fsp~~~~-~lasgs~DG~I~Iwd~~~~ 387 (713)
||.++++.+..+..+...+.+++|++ +++ ++++...++.|..|++...
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCCC
Confidence 99987887777777778899999998 566 5666666789999998653
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=6.1e-14 Score=145.80 Aligned_cols=229 Identities=11% Similarity=0.031 Sum_probs=181.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeccCC-CCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-CceE
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVK 274 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~-~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-~~V~ 274 (713)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.+++++++|+ +.++.|+.||. +++.+..+.... ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46889999999999999999999998887765 5789999999999888 45788999998 888888887643 5788
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEcc------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 275 SVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSFHG------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 275 sl~~spdg~~L~sgs~-Dg~I~IwDl~t~~~~~~~~~------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
++.+.+++++|++.+. ++.|..+|. +++.+.++.. +......+++.++|++|++.+.++.|.+||.+ ++.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 778888885 6787776642 11235566788999999999999999999998 9999
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEeccc-----CCCeEEEEEcCCCcEEEE-eCC---
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-----DNTVWDLAWHPIGYLLCS-NDH--- 418 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~laS-~Dg--- 418 (713)
.++... ..+.++.+.+ ++++|++++.+++|..||..+++.+.++.... -..+..++..+++.++++ .++
T Consensus 159 w~~~~~-~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~ 236 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDR 236 (276)
T ss_dssp EEEECS-SCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCT
T ss_pred EEEECC-CCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccc
Confidence 998865 3456677777 78899988888899999998777665554211 123788889999977765 433
Q ss_pred ------cEEEEecCCCCCcc
Q 005123 419 ------TTKFWCRNRPGDTA 432 (713)
Q Consensus 419 ------~v~iWd~~~~~~~~ 432 (713)
..++++++..++..
T Consensus 237 ~~~~~~~~~~~~~~~~g~~~ 256 (276)
T 3no2_A 237 EAGKGKHPQLVEIDSEGKVV 256 (276)
T ss_dssp TGGGSCCCSEEEECTTSBEE
T ss_pred cccccCCceEEEECCCCCEE
Confidence 44688887766653
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.62 E-value=4.2e-14 Score=167.36 Aligned_cols=242 Identities=10% Similarity=-0.046 Sum_probs=168.2
Q ss_pred CCCceEEEEEccCCCEEEEEECC-----CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc--------
Q 005123 143 NRCSINRVLWTPTGRRLITGSQS-----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA-------- 209 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~d-----g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~-------- 209 (713)
|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|++| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44578899999999999987654 35999999998875432 12222357899999 99988876654
Q ss_pred ------EEEEEcCCCce--eeeec--cCCCCeeEEEEecCCCEEEEEECCC-----eEEEEEcCCCe-e-EEEEccCCCc
Q 005123 210 ------IKYWQNNMNNV--KANKS--AHKESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARCQ-E-ERSLTGHGWD 272 (713)
Q Consensus 210 ------I~vwdl~~~~~--~~~~~--~~~~~V~~l~fs~dg~~Las~s~Dg-----~I~iwDl~~~~-~-~~~l~~h~~~ 272 (713)
|++|++.++.. ...+. .+...+.++.|++||++|+..+.++ .|++||+.++. . ...+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 88999877652 22222 2333588999999999988877543 89999998762 2 4455555555
Q ss_pred eEEEEEcCCCCEEEEEeCC----CcEEEEECCCC--ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCe
Q 005123 273 VKSVDWHPTKSLLVSGGKD----SLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMK 345 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~D----g~I~IwDl~t~--~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~-t~~ 345 (713)
+.... +++++.|+..+.+ +.|.+||+.++ +....+..+...+.+++|+ ++.++++...|+..+||.++ +++
T Consensus 319 ~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 319 QWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp CEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred eEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 55553 4788888887764 45999999875 3333444455557778887 56677788889887777554 455
Q ss_pred eEEEeecC-CCCeEEEEEeCCCCCEEEEEEC---CCcEEEEEcCCCC
Q 005123 346 ELESFRGH-RKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHET 388 (713)
Q Consensus 346 ~l~~~~~h-~~~V~sl~fsp~~~~~lasgs~---DG~I~Iwd~~~~~ 388 (713)
.+..+..+ ...|..+++++++..++++.+. .++|++||+.++.
T Consensus 397 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 397 PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 66666543 5678899999954455555443 4689999997654
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.62 E-value=1.2e-12 Score=135.13 Aligned_cols=237 Identities=6% Similarity=-0.053 Sum_probs=171.4
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
.+...+.+++++++++++++...++.|.+||.. ++. ..+. .....+.++++.++++++++...++.|.+||. +++
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence 345779999999999977777768899999976 333 2232 24567999999999988887777889999998 554
Q ss_pred eeee-eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 220 VKAN-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 220 ~~~~-~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.... .......+.++++.++++.+++...++.|.+||. +++.... +......+.+++++++++++++...++.|.+|
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 4332 2234567899999999988777777889999998 5554432 33345678899999999877776667899999
Q ss_pred ECCCCceEEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE-eecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 298 DAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 298 Dl~t~~~~~~-~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~-~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
|. +++.... +......+.+++++++|+++++...++.|.+||.. ++.... +..+...+.++++ + +++++++.+
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~- 284 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-D-GETIWFAME- 284 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-C-SSCEEEEET-
T ss_pred CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEe-c-CCCEEEEec-
Confidence 99 6654332 23345678999999999866665577899999984 543221 2344567899999 6 677766655
Q ss_pred CCcEEEEEcCCC
Q 005123 376 DGSIFHWLVGHE 387 (713)
Q Consensus 376 DG~I~Iwd~~~~ 387 (713)
.+.|..++.++.
T Consensus 285 ~~~l~~~~~~~~ 296 (299)
T 2z2n_A 285 CDKIGKLTLIKD 296 (299)
T ss_dssp TTEEEEEEEC--
T ss_pred CCcEEEEEcCcc
Confidence 567777777543
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.61 E-value=1.8e-12 Score=140.73 Aligned_cols=270 Identities=9% Similarity=-0.073 Sum_probs=184.5
Q ss_pred EccCCCEEEEEEC--CC---cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEEcC
Q 005123 152 WTPTGRRLITGSQ--SG---EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNN 216 (713)
Q Consensus 152 ~spdg~~Latgs~--dg---~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs----------~DG~I~vwdl~ 216 (713)
..+++++++++.. .. .|.+||..+++.+..+...... .+++++|+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777776653 22 7899999999988887754444 999999999999886 36789999999
Q ss_pred CCceeeeeccC-------CCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCC-CEE
Q 005123 217 MNNVKANKSAH-------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTK-SLL 285 (713)
Q Consensus 217 ~~~~~~~~~~~-------~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg-~~L 285 (713)
+.+.+..+... ...-..+.|++|+++|++++. ++.|.++| .+++.+.. +... . |+.+.+++ +.+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTF 180 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceE
Confidence 88877665432 133568999999999998874 57899999 99888777 5422 2 24455544 456
Q ss_pred EEEeCCCcEEEEECCCCceEEEEc-----cCCCC-eEEEEEcCCCCEEEEEECCCeEEEEECCCCe--eEEEeecC----
Q 005123 286 VSGGKDSLVKLWDAKSGRELCSFH-----GHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--ELESFRGH---- 353 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~~~~~~~-----~h~~~-I~si~fspdg~~Latgs~Dg~I~IwDl~t~~--~l~~~~~h---- 353 (713)
++.+.||.+.+||. +++.+.... ..... .....+.+++..++..+.++.|.+.|+.+.. .+..+...
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~ 259 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR 259 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc
Confidence 77778999999999 877663322 11111 2334566766665555578899999997542 22333211
Q ss_pred ------CCCeEEEEEeCCCCCEEEEEE---------CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc-EEE-E-
Q 005123 354 ------RKDVTALAWHPFHEEYFVSGS---------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLC-S- 415 (713)
Q Consensus 354 ------~~~V~sl~fsp~~~~~lasgs---------~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~la-S- 415 (713)
......+++++++++++++.. .++.|.++|+.+.+....+.. ....++++|++|+. ++. +
T Consensus 260 ~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 260 KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEEEEc
Confidence 122344788884444444332 135799999987765555543 34689999999997 453 3
Q ss_pred -eCCcEEEEecCCCCCc
Q 005123 416 -NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 416 -~Dg~v~iWd~~~~~~~ 431 (713)
.++.|.|||....+..
T Consensus 338 ~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 338 AGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCCCeEEEEECCCCCEE
Confidence 4899999998665543
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=6e-13 Score=143.86 Aligned_cols=275 Identities=9% Similarity=0.004 Sum_probs=192.5
Q ss_pred EEccCCCEEEEEEC-----CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEEc
Q 005123 151 LWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQN 215 (713)
Q Consensus 151 ~~spdg~~Latgs~-----dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs----------~DG~I~vwdl 215 (713)
...|++++|++... ++.|.++|..+++.+..+...... . +++++|+++|++++ .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34678888888876 679999999999999988865555 4 99999999988775 3678999999
Q ss_pred CCCceeeeeccC-------CCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 216 NMNNVKANKSAH-------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 216 ~~~~~~~~~~~~-------~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
.+.+.+..+... ...-..+.|++|+++|+++.. ++.|.++|+.+++.+.++.... + ...+....+.++
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~ 193 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFF 193 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeE
Confidence 999988776432 125667999999999998874 6899999999999988885322 1 222333456777
Q ss_pred EEeCCCcEEEEECCC-CceEEEEccC----CCCe-EEEEEc-CCCCEEEEEECCCeEEEEECCCCe--eEEEeec-----
Q 005123 287 SGGKDSLVKLWDAKS-GRELCSFHGH----KNMV-LCVKWN-QNGNWVLTASKDQIIKLYDIRAMK--ELESFRG----- 352 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t-~~~~~~~~~h----~~~I-~si~fs-pdg~~Latgs~Dg~I~IwDl~t~~--~l~~~~~----- 352 (713)
+.+.||++.++++.+ ++.+.+.... ...+ ....|. ++|++++ .+.++.|+++|+.+.. .+..+..
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~ 272 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAE 272 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccc
Confidence 888899999999976 5543322111 1122 224564 5775444 5668999999997653 3332220
Q ss_pred -----CCCCeEEEEEeCCCCCEEEEEEC---------CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc-E-EEE-
Q 005123 353 -----HRKDVTALAWHPFHEEYFVSGSL---------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-L-LCS- 415 (713)
Q Consensus 353 -----h~~~V~sl~fsp~~~~~lasgs~---------DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~-laS- 415 (713)
....+..++++++.++++++... ...|.++|+.+.+.+..+..+ ..++.|++++|+. + +++
T Consensus 273 ~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn 350 (386)
T 3sjl_D 273 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALS 350 (386)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEE
T ss_pred ccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEc
Confidence 01233457778844444444331 247999999888876666654 3789999999985 3 444
Q ss_pred -eCCcEEEEecCCCCCccc
Q 005123 416 -NDHTTKFWCRNRPGDTAR 433 (713)
Q Consensus 416 -~Dg~v~iWd~~~~~~~~~ 433 (713)
.++.|.|+|....+...+
T Consensus 351 ~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 351 TGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TTTTEEEEEETTTCCEEEE
T ss_pred CCCCeEEEEECCCCcEEEE
Confidence 589999999876554433
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.58 E-value=1.8e-12 Score=135.63 Aligned_cols=232 Identities=9% Similarity=0.111 Sum_probs=161.6
Q ss_pred CCCCCceEEEEEccCCCE-EEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 141 NKNRCSINRVLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~-Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
..+..-..+..|++++.. +++...++.|+.||..+++.. .+ .....+.+++++++++++++ . ++.|.+||.++++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 344455678999996554 555556889999999887653 33 24578999999999995554 4 5679999998876
Q ss_pred eeeeecc----CCCCeeEEEEecCCCEEEEEECC---------CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 220 VKANKSA----HKESVRDLSFCRTDLKFCSCSDD---------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 220 ~~~~~~~----~~~~V~~l~fs~dg~~Las~s~D---------g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
....... ....+++++++++++++++...+ ....||.+........+.......+.++|+++++.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEE
Confidence 5443322 22458899999999977655322 2345555443222222333445678999999998765
Q ss_pred E-EeCCCcEEEEEC--CCCceE-----EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE
Q 005123 287 S-GGKDSLVKLWDA--KSGREL-----CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 358 (713)
Q Consensus 287 s-gs~Dg~I~IwDl--~t~~~~-----~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~ 358 (713)
+ .+.++.|.+||+ .+++.. ..+.........++++++|+++++...++.|.+||.++++.+..+..+...++
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence 5 455788999987 455432 22222345688999999999888888888999999999999999988878899
Q ss_pred EEEEe-CCCCCEEEEEECC
Q 005123 359 ALAWH-PFHEEYFVSGSLD 376 (713)
Q Consensus 359 sl~fs-p~~~~~lasgs~D 376 (713)
+++|. ++.+.++++...+
T Consensus 245 ~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEEESGGGCEEEEEEBCT
T ss_pred EEEEeCCCCCEEEEEcCCc
Confidence 99998 6444555555443
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.57 E-value=2.1e-12 Score=134.75 Aligned_cols=240 Identities=10% Similarity=0.066 Sum_probs=168.0
Q ss_pred ccCCCEEEEEEccCCCEEEE-------EeCCCcEEEEEcCCCceeeeec----cCCCCeeEEEEecC-CCEEEEEECCCe
Q 005123 184 AHDHAIRSMVWSHNDNWMVS-------GDDGGAIKYWQNNMNNVKANKS----AHKESVRDLSFCRT-DLKFCSCSDDTT 251 (713)
Q Consensus 184 ~h~~~V~sl~~spdg~~L~s-------gs~DG~I~vwdl~~~~~~~~~~----~~~~~V~~l~fs~d-g~~Las~s~Dg~ 251 (713)
..-....+++|+++++++++ +..++.|.+||..+++...... .+...+.+++++++ ++ |++++.++.
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLG 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCC
Confidence 33456789999998888777 5678899999988777643322 14467899999998 55 444444558
Q ss_pred EEEEEcCCCeeEEE-Ecc----CCCceEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCceEEEEccC
Q 005123 252 VKVWDFARCQEERS-LTG----HGWDVKSVDWHPTKSLLVSGGKD---------------SLVKLWDAKSGRELCSFHGH 311 (713)
Q Consensus 252 I~iwDl~~~~~~~~-l~~----h~~~V~sl~~spdg~~L~sgs~D---------------g~I~IwDl~t~~~~~~~~~h 311 (713)
|.+||.. ++.... ... ....+.+++++++++++++...+ +.|..||.. ++..... ..
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~ 170 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TA 170 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cC
Confidence 9999988 554332 211 12458899999999877776654 567777766 5443322 23
Q ss_pred CCCeEEEEEc----CCCCEEEEE-ECCCeEEEEECC-CCe-----eEEEeecCC-CCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 312 KNMVLCVKWN----QNGNWVLTA-SKDQIIKLYDIR-AMK-----ELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 312 ~~~I~si~fs----pdg~~Latg-s~Dg~I~IwDl~-t~~-----~l~~~~~h~-~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
......++|+ ++++.|+++ ..++.|++||++ +++ .+..+..+. ..+..+++++ +++++++...++.|
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHI 249 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEE
Confidence 3457889999 999766655 467899999986 443 223333333 5688999998 78888888888999
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCc-EEEE--eCCcEEEEecCCCC
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~laS--~Dg~v~iWd~~~~~ 429 (713)
.+||.+++..... ...+...+.+++|++++. +.++ .++.|..|+++..+
T Consensus 250 ~~~d~~~g~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 250 EVFGPDGGQPKMR-IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEECTTCBSCSEE-EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEEcCCCCcEeEE-EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 9999875543333 334557899999999997 4454 45689999886543
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.57 E-value=2.1e-12 Score=141.95 Aligned_cols=234 Identities=9% Similarity=0.040 Sum_probs=169.7
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG--~I~vwdl~~~~~~~ 222 (713)
.....|+|+++++++++...++.|++||.+++......... .... ++|+++++.|++++.++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46889999999987777777799999999987776665543 3333 99999999999988866 78888877665433
Q ss_pred ee----ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE----EccCCCce--EEEEEcCC-CCEEEEEeCC
Q 005123 223 NK----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS----LTGHGWDV--KSVDWHPT-KSLLVSGGKD 291 (713)
Q Consensus 223 ~~----~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~----l~~h~~~V--~sl~~spd-g~~L~sgs~D 291 (713)
.+ ......+.++++++++..|+++..++.|+.||..++..... ..+..... ..++|+++ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 22456788999999666666677889999999987654322 22222222 29999995 5555555667
Q ss_pred CcEEEEECCCCceEEEEccC---------------CCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecC--
Q 005123 292 SLVKLWDAKSGRELCSFHGH---------------KNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGH-- 353 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h---------------~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h-- 353 (713)
+.|+.||.+.. +..+.++ -.....++|+++|+++++-+ .++.|++||+.+++. .++.++
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~ 365 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVD 365 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTT
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCC
Confidence 88999997643 3333222 24578999999999777777 789999999877764 334333
Q ss_pred -------------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 354 -------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 354 -------------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
-.....|++++ ++.++++-..+++|+.+++
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 24588999999 5888888888888888775
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=1.8e-11 Score=132.79 Aligned_cols=236 Identities=7% Similarity=-0.066 Sum_probs=167.8
Q ss_pred EEEEccCCCEEEEEE----------CCCcEEEEeCCCCceEEEEecc-------CCCEEEEEEccCCCEEEEEeC--CCc
Q 005123 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHNDNWMVSGDD--GGA 209 (713)
Q Consensus 149 ~v~~spdg~~Latgs----------~dg~V~Iwd~~t~~~~~~l~~h-------~~~V~sl~~spdg~~L~sgs~--DG~ 209 (713)
.++|++|+++|+++. .++.|.+||..+.+.+..+... ...-..++|++||++|++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999886 3678999999998888776542 123458999999999998874 478
Q ss_pred EEEEEcCCCceeee-eccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEc-----cCCCc-eEEEEEcCC
Q 005123 210 IKYWQNNMNNVKAN-KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT-----GHGWD-VKSVDWHPT 281 (713)
Q Consensus 210 I~vwdl~~~~~~~~-~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~-----~h~~~-V~sl~~spd 281 (713)
|.++| .+++.+.. +.. .. ++.+.+++ +.+++.+.||++.+||. +++.+.... ..... .....+.++
T Consensus 150 v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99888766 432 22 24444554 45677778999999999 776653322 11111 123455666
Q ss_pred CCEEEEEeCCCcEEEEECCCCc--eEEEEccC----------CCCeEEEEEcCCCCEEEEEEC----------CCeEEEE
Q 005123 282 KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGH----------KNMVLCVKWNQNGNWVLTASK----------DQIIKLY 339 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h----------~~~I~si~fspdg~~Latgs~----------Dg~I~Iw 339 (713)
+..++..+.++.|.+.|+.+.. .+..+... ......+.+++|++.|+++.. ++.|.++
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 6655555578899999997653 22222110 122344788999988887654 3579999
Q ss_pred ECCCCeeEEEeecCCCCeEEEEEeCCCCC-EEEEEE-CCCcEEEEEcCCCCceEE
Q 005123 340 DIRAMKELESFRGHRKDVTALAWHPFHEE-YFVSGS-LDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 340 Dl~t~~~l~~~~~h~~~V~sl~fsp~~~~-~lasgs-~DG~I~Iwd~~~~~~~~~ 392 (713)
|+.+++.+.++.. ......++|++ +++ +++++. .++.|.+||+.+.+....
T Consensus 304 D~~t~~vv~~i~~-g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 304 TGLVGQTSSQISL-GHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ECCCCEEEEEEEC-CCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9999999888863 44689999999 555 777776 589999999988775544
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=1.3e-11 Score=127.49 Aligned_cols=236 Identities=7% Similarity=-0.014 Sum_probs=168.1
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE-EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
..+...+.+++++++++++++...++.|.+||.. ++.... +......+.++++.++++++++...++.|..||.+ ++
T Consensus 58 ~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 58 PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence 3445679999999999877776667889999987 554322 22234679999999999888777768899999987 55
Q ss_pred eeee-eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 220 VKAN-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 220 ~~~~-~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.... +......+.++++.++++++++...++.|.+||. +++.... +......+.+++++++++++++...++.|.+|
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 4422 2334567899999999997666666789999998 4444332 22344578999999999877766667789999
Q ss_pred ECCCCceEEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE-EeecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 298 DAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 298 Dl~t~~~~~~-~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~-~~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
|. +++.... +......+.+++++++|+++++...++.|.+||.. ++... .+......+.++++++ +++++++..
T Consensus 215 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~- 290 (300)
T 2qc5_A 215 TT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGK-DGSVWFALK- 290 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECT-TSCEEEECS-
T ss_pred cC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCC-CCCEEEEcc-
Confidence 98 4544332 23345678999999999866666567899999984 44332 2233345688999988 566666554
Q ss_pred CCcEEEEEc
Q 005123 376 DGSIFHWLV 384 (713)
Q Consensus 376 DG~I~Iwd~ 384 (713)
+ .|..+|.
T Consensus 291 ~-~i~~~~p 298 (300)
T 2qc5_A 291 C-KIGKLNL 298 (300)
T ss_dssp S-EEEEEEE
T ss_pred C-ceEEeCC
Confidence 4 7777765
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.52 E-value=1.4e-11 Score=130.70 Aligned_cols=223 Identities=9% Similarity=0.004 Sum_probs=155.8
Q ss_pred ceEEEEEccCCCE-EEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 146 SINRVLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 146 ~V~~v~~spdg~~-Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
-..+.+|++++.. +++...++.|.+||..+++.. .+. ....|.+++|+++++++++. .+ .|.+||.++++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 4578899998554 455556789999999887543 333 35689999999998877754 44 4999999887754332
Q ss_pred cc----CCCCeeEEEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-eCCCc
Q 005123 225 SA----HKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSL 293 (713)
Q Consensus 225 ~~----~~~~V~~l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~ 293 (713)
.. ....+++++++++++++++... .+.|..+| +++... +.........++|+++++.|+++ +.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1246889999999987765542 24566666 444333 32233457899999999877655 45688
Q ss_pred EEEEECC--CC-ce-----EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEe-C
Q 005123 294 VKLWDAK--SG-RE-----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH-P 364 (713)
Q Consensus 294 I~IwDl~--t~-~~-----~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs-p 364 (713)
|.+||++ ++ +. +..+.........++++.+|+++++...++.|.+||. +++.+..+..+...+++++|+ +
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence 9999986 55 32 2222333456788999999988777777789999998 577777787777789999998 6
Q ss_pred CCCCEEEEEECC
Q 005123 365 FHEEYFVSGSLD 376 (713)
Q Consensus 365 ~~~~~lasgs~D 376 (713)
+.+.++++...+
T Consensus 282 d~~~L~vt~~~~ 293 (326)
T 2ghs_A 282 DASRLLVTSARE 293 (326)
T ss_dssp TSCEEEEEEBCT
T ss_pred CCCEEEEEecCC
Confidence 334444555444
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.51 E-value=2.7e-12 Score=141.00 Aligned_cols=271 Identities=9% Similarity=0.024 Sum_probs=190.7
Q ss_pred cCCCEEEEEECC-----CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEEcCCC
Q 005123 154 PTGRRLITGSQS-----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMN 218 (713)
Q Consensus 154 pdg~~Latgs~d-----g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs----------~DG~I~vwdl~~~ 218 (713)
+++++++++... +.|.++|..+.+.+..+..-... .+++++|+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466667666553 68999999999999999876666 899999999988876 4678999999999
Q ss_pred ceeeeeccC-------CCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC-CCEEEEE
Q 005123 219 NVKANKSAH-------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSG 288 (713)
Q Consensus 219 ~~~~~~~~~-------~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd-g~~L~sg 288 (713)
+.+..+... ......+.|++|+++|+++.. +++|.++|+.+.+.+..+..... ....++ ...+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence 888776432 234567899999999999875 57899999999998888764221 233333 3566777
Q ss_pred eCCCcEEEEECCCCceEEEE----ccCCCC-eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE--EEeecC--------
Q 005123 289 GKDSLVKLWDAKSGRELCSF----HGHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL--ESFRGH-------- 353 (713)
Q Consensus 289 s~Dg~I~IwDl~t~~~~~~~----~~h~~~-I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l--~~~~~h-------- 353 (713)
+.||++.+.|+.+++..... ...... ...+.|++++..++..+.++.|.+.|+...... ..+..-
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 78888888888666554321 111111 123567899888888888899999999754421 111100
Q ss_pred --CCCeEEEEEeCCCCCEEEEEEC---------CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc-EEEE---eCC
Q 005123 354 --RKDVTALAWHPFHEEYFVSGSL---------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCS---NDH 418 (713)
Q Consensus 354 --~~~V~sl~fsp~~~~~lasgs~---------DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~laS---~Dg 418 (713)
......+++++++.+++++... ++.|.++|+.+.+....+..+ ...+.|+|++|+. ++.+ .++
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~ 393 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQ 393 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTT
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCC
Confidence 0112236889954445554431 357999999888766665543 3589999999997 5543 489
Q ss_pred cEEEEecCCCCCcc
Q 005123 419 TTKFWCRNRPGDTA 432 (713)
Q Consensus 419 ~v~iWd~~~~~~~~ 432 (713)
.|.|+|....+...
T Consensus 394 ~VsVID~~t~kvv~ 407 (426)
T 3c75_H 394 TLHIYDAATGEELR 407 (426)
T ss_dssp EEEEEETTTCCEEE
T ss_pred eEEEEECCCCCEEE
Confidence 99999997665543
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.51 E-value=1.2e-12 Score=153.67 Aligned_cols=241 Identities=9% Similarity=0.048 Sum_probs=163.5
Q ss_pred CCCCceEEEEEccCCCEEEEEEC-----CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc-------
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA------- 209 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~-----dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~------- 209 (713)
+|...|..++|||||++||.+.. +..|+|||+.+++.+... .+.....+++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 45667999999999999986432 256999999999865431 111113577999 9999998887743
Q ss_pred ------EEEEEcCCCce----eeeecc-CCCCeeEEEEecCCCEEEEEEC----CCeEEEEEcCCCe-eEEEEccCCCce
Q 005123 210 ------IKYWQNNMNNV----KANKSA-HKESVRDLSFCRTDLKFCSCSD----DTTVKVWDFARCQ-EERSLTGHGWDV 273 (713)
Q Consensus 210 ------I~vwdl~~~~~----~~~~~~-~~~~V~~l~fs~dg~~Las~s~----Dg~I~iwDl~~~~-~~~~l~~h~~~V 273 (713)
|++|++.+... +..... +...+.++.|++|+++|+.... +..|++||+.+.. ....+..+...+
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999887642 222222 3445788999999998865443 3589999997763 344555555555
Q ss_pred EEEEEcCCCCEEEEEeC-C---CcEEEEECCCCce--EEEEccCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCC
Q 005123 274 KSVDWHPTKSLLVSGGK-D---SLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAM 344 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~-D---g~I~IwDl~t~~~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg---~I~IwDl~t~ 344 (713)
... |+++++.|+..+. + +.|.++|+.++.. ...+..+...+. .|++++++|+....++ .|++||+..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 555 5666666555543 3 5799999988654 344555555554 8888998888766544 6899998854
Q ss_pred eeEEEee-cCCCCeEEEEEeCCCCCEEEEEECC---CcEEEEEcCCCC
Q 005123 345 KELESFR-GHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHET 388 (713)
Q Consensus 345 ~~l~~~~-~h~~~V~sl~fsp~~~~~lasgs~D---G~I~Iwd~~~~~ 388 (713)
. ...+. .....+..+.+++++..++++.+.. ++|+.||+.++.
T Consensus 361 ~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 R-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp E-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred e-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4 44443 2345677888887555555555442 789999986654
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=1.1e-11 Score=136.32 Aligned_cols=232 Identities=9% Similarity=0.048 Sum_probs=164.7
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC--eEEEEEcCCCeeEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVKVWDFARCQEER 264 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg--~I~iwDl~~~~~~~ 264 (713)
.....|+|+++++++++...++.|++||.+++.+...... ..... ++|+++++.|++++.++ .|.+||........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4678999999998777777779999999998877655444 33334 99999999999988866 79999987655444
Q ss_pred EE----ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE----EccCCCCe--EEEEEcCC-CCEEEEEECC
Q 005123 265 SL----TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS----FHGHKNMV--LCVKWNQN-GNWVLTASKD 333 (713)
Q Consensus 265 ~l----~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~----~~~h~~~I--~si~fspd-g~~Latgs~D 333 (713)
.+ ......+.++++++++..|+++..++.|+.||..++..... ..+..... ..++|+++ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 22456788999999656666677788999999987764332 22222222 38999995 5555555667
Q ss_pred CeEEEEECCCCeeEEEeecCC---------------CCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCceEEEeccc
Q 005123 334 QIIKLYDIRAMKELESFRGHR---------------KDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVH 397 (713)
Q Consensus 334 g~I~IwDl~t~~~l~~~~~h~---------------~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~~~~~~~h 397 (713)
+.|+.||.... +..+.++. .....+++++ +++++++-+ .++.|+.|++.++. +..+.++
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~--v~~~~g~ 363 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGY--VSTVAGQ 363 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTE--EEEEEEC
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCE--EEEEeCC
Confidence 89999998743 33333322 3478999999 677888877 88999999975543 2222222
Q ss_pred ---------------CCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 398 ---------------DNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 398 ---------------~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
-.....|++++++.++++ .++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 246889999999977766 6677777765
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=2.5e-12 Score=138.98 Aligned_cols=253 Identities=8% Similarity=-0.007 Sum_probs=174.1
Q ss_pred EEEccCCCEEEEEE----------CCCcEEEEeCCCCceEEEEeccC-------CCEEEEEEccCCCEEEEEeC--CCcE
Q 005123 150 VLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHD-------HAIRSMVWSHNDNWMVSGDD--GGAI 210 (713)
Q Consensus 150 v~~spdg~~Latgs----------~dg~V~Iwd~~t~~~~~~l~~h~-------~~V~sl~~spdg~~L~sgs~--DG~I 210 (713)
+++++||++|+++. .++.|.+||..+.+.+..+.... ..-..++|++||++|+++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 99999999988775 36789999999999988875422 24557899999999998874 6899
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-CeeEEEEccC----CCce-EEEEEc-CCCC
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGH----GWDV-KSVDWH-PTKS 283 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-~~~~~~l~~h----~~~V-~sl~~s-pdg~ 283 (713)
.|+|+.+++.+.++.... + ...+....+.+++.+.||++.+.++.+ ++.+...... ...+ ....|. ++++
T Consensus 163 sVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~ 239 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 239 (386)
T ss_dssp EEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred EEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc
Confidence 999999999988874322 1 233444556777888899999999876 4443222111 1112 124564 5665
Q ss_pred EEEEEeCCCcEEEEECCCCc--eEEEEcc----------CCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEEC
Q 005123 284 LLVSGGKDSLVKLWDAKSGR--ELCSFHG----------HKNMVLCVKWNQNGNWVLTASK----------DQIIKLYDI 341 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~--~~~~~~~----------h~~~I~si~fspdg~~Latgs~----------Dg~I~IwDl 341 (713)
++ ..+.+++|+++|+.+.. .+..+.. ....+..++++++++.|++... .+.|.++|+
T Consensus 240 ~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~ 318 (386)
T 3sjl_D 240 LV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 318 (386)
T ss_dssp EE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence 44 46668999999997654 2222210 0122345778999988888653 257999999
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE-ECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC
Q 005123 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 342 ~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg-s~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (713)
++++.+..+.. ...+..|++++++..+|+++ ..++.|.++|..+.+.+..+.. .+.-+.|.+++|
T Consensus 319 ~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~--~~~p~~l~~s~d 384 (386)
T 3sjl_D 319 KTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ--LGHGPQVITTAD 384 (386)
T ss_dssp TTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC--CCSSCCEEEECC
T ss_pred CCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC--CCCCceeEECCc
Confidence 99999988863 34678999999544366554 4589999999988775544433 233444555554
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.50 E-value=1.1e-12 Score=154.05 Aligned_cols=238 Identities=11% Similarity=0.056 Sum_probs=156.6
Q ss_pred cCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC---------
Q 005123 185 HDHAIRSMVWSHNDNWMVSGD-----DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--------- 250 (713)
Q Consensus 185 h~~~V~sl~~spdg~~L~sgs-----~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg--------- 250 (713)
+...+..++|||||++|+.+. ++..|+|||+++++.+... ........++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 455788999999999888432 2357999999999865431 111123678999 999999988774
Q ss_pred ----eEEEEEcCCCee--EEEEc--c-CCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc-eEEEEccCCCCeE
Q 005123 251 ----TVKVWDFARCQE--ERSLT--G-HGWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGR-ELCSFHGHKNMVL 316 (713)
Q Consensus 251 ----~I~iwDl~~~~~--~~~l~--~-h~~~V~sl~~spdg~~L~sgs~----Dg~I~IwDl~t~~-~~~~~~~h~~~I~ 316 (713)
.|++|++.+... ...+. . +...+.++.|++|+++|+.... ++.|+++|+.++. ....+..+...+.
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 399999977543 23333 2 3445789999999998866543 2489999998764 4455555555555
Q ss_pred EEEEcCCCCEEEEEEC-C---CeEEEEECCCCee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCC--cEEEEEcCCCC
Q 005123 317 CVKWNQNGNWVLTASK-D---QIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHET 388 (713)
Q Consensus 317 si~fspdg~~Latgs~-D---g~I~IwDl~t~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG--~I~Iwd~~~~~ 388 (713)
.. |+++++.|+..+. + +.|.++|+.++.. ...+..|...+. .|+++++.++++...++ .|++||++..
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence 55 6667766665543 2 5799999987654 345555666665 78884444445555565 5888887633
Q ss_pred ceEEEecccCCCeEEEEEcCCCcEE-EE-eC----CcEEEEecCCC
Q 005123 389 PQVEIHNVHDNTVWDLAWHPIGYLL-CS-ND----HTTKFWCRNRP 428 (713)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~spdg~~l-aS-~D----g~v~iWd~~~~ 428 (713)
....+.....+.+..+.+++++..+ .+ .+ ++|..||++..
T Consensus 361 ~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 361 RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 2333333344567788888777433 22 33 77888877543
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=4.5e-13 Score=145.29 Aligned_cols=172 Identities=10% Similarity=0.059 Sum_probs=137.6
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCc---------eEE-EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN---------FEM-ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~---------~~~-~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
.++.++++++..+|++|+.++ ++||++++.. ... ....+.. |+.|+| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999985 6669855332 111 2223566 999999 89999998 7899999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
.+.........+...|.++.+... .+++++.||.|.+||+.++.... +...|+|++|+++| +++|..||+|+
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 887666666677778888887654 38899999999999998776643 34589999999999 78899999999
Q ss_pred EEECCCCce--EEEE------c---cCCCCeEEEEEcCCCCEEEEE
Q 005123 296 LWDAKSGRE--LCSF------H---GHKNMVLCVKWNQNGNWVLTA 330 (713)
Q Consensus 296 IwDl~t~~~--~~~~------~---~h~~~I~si~fspdg~~Latg 330 (713)
+|+.+..+. ..++ . +|...|.+|+|.+++.+|++=
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 999887775 5556 2 367889999999999888763
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.48 E-value=8.5e-12 Score=130.90 Aligned_cols=231 Identities=9% Similarity=0.012 Sum_probs=159.4
Q ss_pred CCCCceEEEEEccCCC-EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 142 KNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.........+|+++++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+ ++.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence 3445678899999998 5556667889999998 444 44555667789999999999976666566889999986 543
Q ss_pred eeeecc----CCCCeeEEEEecCCCEEEE----EEC-------------CCeEEEEEcCCCeeEEEEccCCCceEEEEEc
Q 005123 221 KANKSA----HKESVRDLSFCRTDLKFCS----CSD-------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (713)
Q Consensus 221 ~~~~~~----~~~~V~~l~fs~dg~~Las----~s~-------------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~s 279 (713)
...... ....++++++.++++++++ +.. .+.|..||..+++..... .....+.++|+
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~s 196 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFS 196 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEEC
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEc
Confidence 322211 1235778999999998876 321 256788887666544333 34567899999
Q ss_pred CCCCEEEEEeCC------CcEEEEECCCCceE--EEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEe
Q 005123 280 PTKSLLVSGGKD------SLVKLWDAKSGREL--CSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (713)
Q Consensus 280 pdg~~L~sgs~D------g~I~IwDl~t~~~~--~~~-~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~ 350 (713)
+|++.|+++..+ +.|.+||+..+... ..+ .........++++++|+++ +++.+ .|.+||. +++.+..+
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~-~g~~~~~~ 273 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS-DGQLLGHI 273 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEECT-TSCEEEEE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEECC-CCCEEEEE
Confidence 999988877665 68999998765411 111 1123445678999999944 44444 5999998 47777777
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
.... .+.+++|++ +++.|+.++.+ .|+.++
T Consensus 274 ~~~~-~~~~~~f~~-d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 274 PTPG-TASNCTFDQ-AQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp ECSS-CCCEEEECT-TSCEEEEEETT-EEEEEE
T ss_pred ECCC-ceeEEEEeC-CCCEEEEEcCC-eEEEEE
Confidence 6555 588999997 66666666665 444433
No 216
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.47 E-value=2.6e-11 Score=130.73 Aligned_cols=263 Identities=6% Similarity=-0.038 Sum_probs=177.3
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccC---------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD---------HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~---------~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
+..|++++.++.|+.||.++++.+-.+.... ..+.+. ..-++..|++++.++.|..+|.++++.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5678888889999999999998876665421 223222 222467888889999999999999988766654
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V-----~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
.........+. +..+++++.++.|..+|.++++.+..+....... ...... +..+++++.++.|..+|.++
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTT
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCC
Confidence 43322222332 4578888899999999999998887765432211 222222 45788888899999999999
Q ss_pred CceEEEEccCCCC----------e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 302 GRELCSFHGHKNM----------V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 302 ~~~~~~~~~h~~~----------I-~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
++.+..+...... + ....+ .+..|++++.++.|..+|.++++.+..... .....+.. ++..|
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~---~~~~l 280 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV---DGNRI 280 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE---ETTEE
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE---ECCEE
Confidence 9988776532110 1 11111 356788888899999999999998876653 33455554 35667
Q ss_pred EEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
++++.++.|..+|..+++............+.......+..++++.++.|.+||.+..+.
T Consensus 281 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 281 YLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCE
T ss_pred EEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcE
Confidence 778889999999998887655443222333444444444444555889999999866543
No 217
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.45 E-value=5.1e-11 Score=128.42 Aligned_cols=260 Identities=13% Similarity=0.038 Sum_probs=173.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCe---
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--- 231 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V--- 231 (713)
++..|++++.++.|+.+|.++++.+-.............. .+..+++++.++.|..+|..+++.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 4567888999999999999999987766654332222223 24578888899999999999998877664432211
Q ss_pred --eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc-------eEEEEEcC--CCCEEEEEeCCCcEEEEECC
Q 005123 232 --RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD-------VKSVDWHP--TKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 232 --~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~-------V~sl~~sp--dg~~L~sgs~Dg~I~IwDl~ 300 (713)
...... +..+++++.++.|..+|..+++.+......... +..+...+ .+..+++++.++.|..+|.+
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence 222222 456788888999999999999887666432110 00011111 25678888889999999999
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec-CCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
+++.+..... .....+.. ++..|++++.++.|..+|.++++.+..... ....+...... +..|++++.+|.|
T Consensus 258 tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l 330 (376)
T 3q7m_A 258 SGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYL 330 (376)
T ss_dssp TCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTTSEE
T ss_pred CCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCCCeE
Confidence 9998876652 33444544 466888889999999999999998877652 22333334432 4578888899999
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
+++|.++++....................+..++++.||.|.+|+.
T Consensus 331 ~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 331 HWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp EEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEEC
T ss_pred EEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEeC
Confidence 9999988775544433222222223334333455568899998863
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=1.1e-10 Score=121.80 Aligned_cols=224 Identities=8% Similarity=0.056 Sum_probs=151.7
Q ss_pred EeccCCCEEEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 005123 182 LQAHDHAIRSMVWSHNDNW-MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg~~-L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~ 260 (713)
+.....-..+..|++++.. +++...++.|..||..+++... + .....+.+++++++++++++ . ++.|.+||.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 3334455678899986654 4555667899999998876532 2 34568999999999995544 4 568999999887
Q ss_pred eeEEEEcc----CCCceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEE
Q 005123 261 QEERSLTG----HGWDVKSVDWHPTKSLLVSGGKD---------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 261 ~~~~~l~~----h~~~V~sl~~spdg~~L~sgs~D---------g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~L 327 (713)
+....... ....+++++++++|+++++...+ ....||.+.....+..+.......+.++|++|++.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence 65433322 12458899999999966654321 223455443322233333334557899999999877
Q ss_pred EEE-ECCCeEEEEEC--CCCee-----EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC
Q 005123 328 LTA-SKDQIIKLYDI--RAMKE-----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 399 (713)
Q Consensus 328 atg-s~Dg~I~IwDl--~t~~~-----l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~ 399 (713)
+++ +.++.|.+||+ .+++. +..+..+......+++++ +++++++...++.|.+||.++++.. ..+..+..
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~-~~i~~p~~ 241 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRL-QTVKLPVD 241 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEE-EEEECSSS
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEE-EEEECCCC
Confidence 655 45789999997 44432 222333345678999998 6788888888889999998766543 34444567
Q ss_pred CeEEEEEc-CCCc
Q 005123 400 TVWDLAWH-PIGY 411 (713)
Q Consensus 400 ~V~~l~~s-pdg~ 411 (713)
.+++++|. +++.
T Consensus 242 ~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 242 KTTSCCFGGKNYS 254 (297)
T ss_dssp BEEEEEEESGGGC
T ss_pred CceEEEEeCCCCC
Confidence 89999998 6653
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=4.4e-12 Score=135.60 Aligned_cols=254 Identities=11% Similarity=0.025 Sum_probs=167.0
Q ss_pred CceEEEEEccCCCEEEEEEC--CCcEEEEeCCCCceEEEE-------eccCCCEEEEEEccCCCEEEEEeC-----CCcE
Q 005123 145 CSINRVLWTPTGRRLITGSQ--SGEFTLWNGQSFNFEMIL-------QAHDHAIRSMVWSHNDNWMVSGDD-----GGAI 210 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~--dg~V~Iwd~~t~~~~~~l-------~~h~~~V~sl~~spdg~~L~sgs~-----DG~I 210 (713)
..+..|+++++|+++++... ++.++||.+.+++.. .+ ..+-..+.+|+++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998888642 343555554444332 22 124467999999999876555433 5789
Q ss_pred EEEEcCCCceeeeeccC------CCCeeEEEEecCCCEEE-EEE---CCCeEEEEEcCCCeeEEEEccCCCceE-EEEEc
Q 005123 211 KYWQNNMNNVKANKSAH------KESVRDLSFCRTDLKFC-SCS---DDTTVKVWDFARCQEERSLTGHGWDVK-SVDWH 279 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~------~~~V~~l~fs~dg~~La-s~s---~Dg~I~iwDl~~~~~~~~l~~h~~~V~-sl~~s 279 (713)
.+||+.+++++..+... ...+.++++++++..++ +.. .++.|.+||+.+++..+.+..|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999998866555321 23568999997655554 444 578999999998877666654322110 13334
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECC---CCe-----eEE--
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIR---AMK-----ELE-- 348 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg-~I~IwDl~---t~~-----~l~-- 348 (713)
.++..+.+.+.++.++.|. ..+..|+|++|+++|+++..++ .|+.+|.. .+. ...
T Consensus 176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 4566777777777776653 2367899999999999888766 55555532 110 000
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec-ccCCCeEEEEEcCCCcEEEE
Q 005123 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 349 ~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~laS 415 (713)
...++......+++++ +++++++...++.|.+||..+++ ...+.. .+...+.+|+|.+++.++++
T Consensus 242 ~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 242 ERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp EEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred EecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCCCcEEEE
Confidence 1112334566789998 68899999899999999984443 222222 22456889999988866655
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.43 E-value=1.9e-12 Score=140.29 Aligned_cols=173 Identities=10% Similarity=0.029 Sum_probs=137.0
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc---------eee-eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---------VKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~---------~~~-~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
.++.++++++..+|++|+.++ ++||++++.+ ... ....+.. |+.|+| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 688999999999999999875 5669865433 111 1223455 999999 89999998 8899999999
Q ss_pred CCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005123 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIK 337 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~ 337 (713)
.+......+..+...+.++.+.+. .+++++.||.|.+||++++.... +...|+|++||++| +++|..||+|+
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 877666666677788888888754 38889999999999999877653 34579999999999 78899999999
Q ss_pred EEECCCCee--EEEe------e---cCCCCeEEEEEeCCCCCEEEEEE
Q 005123 338 LYDIRAMKE--LESF------R---GHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 338 IwDl~t~~~--l~~~------~---~h~~~V~sl~fsp~~~~~lasgs 374 (713)
+|+....+. ..++ . +|...|.+|.|.+ +..++++-.
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y~ 232 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVFG 232 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEEc
Confidence 999987775 5556 2 3778899999998 677777643
No 221
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.40 E-value=2.2e-11 Score=133.70 Aligned_cols=239 Identities=6% Similarity=-0.011 Sum_probs=171.2
Q ss_pred EEEEccCCCEEEEEE----------CCCcEEEEeCCCCceEEEEecc-------CCCEEEEEEccCCCEEEEEeC--CCc
Q 005123 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHNDNWMVSGDD--GGA 209 (713)
Q Consensus 149 ~v~~spdg~~Latgs----------~dg~V~Iwd~~t~~~~~~l~~h-------~~~V~sl~~spdg~~L~sgs~--DG~ 209 (713)
.+++++|+++|+++. .++.|.++|..+.+.+..+... ......++|++|+++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999998876 3678999999999998887542 123457899999999999874 578
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEE----ccCCCc-eEEEEEcCCCC
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSL----TGHGWD-VKSVDWHPTKS 283 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l----~~h~~~-V~sl~~spdg~ 283 (713)
|.++|+.+.+++..+..... ....++ ...+++.+.||++.+.|+.+++..... ...... ...+.|.+++.
T Consensus 202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 99999999998877654221 222333 356677778888888888665544321 111111 12456788888
Q ss_pred EEEEEeCCCcEEEEECCCCceE--EEEcc---C-------CCCeEEEEEcCCCCEEEEEEC----------CCeEEEEEC
Q 005123 284 LLVSGGKDSLVKLWDAKSGREL--CSFHG---H-------KNMVLCVKWNQNGNWVLTASK----------DQIIKLYDI 341 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~~~--~~~~~---h-------~~~I~si~fspdg~~Latgs~----------Dg~I~IwDl 341 (713)
.++..+.++.|.+.|+.+.... ..+.. . ......+++++++++|++... ++.|.++|+
T Consensus 278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~ 357 (426)
T 3c75_H 278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA 357 (426)
T ss_dssp EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence 8888888899999998764422 11110 0 011223789999888877653 357999999
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCC-EEEEEE-CCCcEEEEEcCCCCceEEE
Q 005123 342 RAMKELESFRGHRKDVTALAWHPFHEE-YFVSGS-LDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 342 ~t~~~l~~~~~h~~~V~sl~fsp~~~~-~lasgs-~DG~I~Iwd~~~~~~~~~~ 393 (713)
.+.+.+.++..- .....++|++ +++ +++++. .++.|.|+|+.+.+....+
T Consensus 358 ~T~kvv~~I~vg-~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 358 ETGERINKIELG-HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTCCEEEEEEEE-EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCeEEEEEECC-CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999999888632 3578999999 566 777777 5999999999888765554
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.39 E-value=4.1e-10 Score=119.38 Aligned_cols=214 Identities=8% Similarity=-0.023 Sum_probs=146.7
Q ss_pred CEEEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE
Q 005123 188 AIRSMVWSHNDNW-MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 188 ~V~sl~~spdg~~-L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l 266 (713)
...+.+|++++.. +++...++.|.+||.++++.... .....+.+++|++++++++++ .+ .|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~--~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH--ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE--ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 4567899997554 45555678999999988765432 234679999999999877654 44 5999999877654332
Q ss_pred cc----CCCceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCe
Q 005123 267 TG----HGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQI 335 (713)
Q Consensus 267 ~~----h~~~V~sl~~spdg~~L~sgs~------Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~ 335 (713)
.. ....+.+++++++++++++... .+.|..+| +++.. .+.........++|++|+++|+++. .++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1246889999999987665542 24566666 45433 3322334578899999998776654 5689
Q ss_pred EEEEECC--CC-e-----eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEc
Q 005123 336 IKLYDIR--AM-K-----ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 336 I~IwDl~--t~-~-----~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (713)
|.+||++ ++ + .+..+......+..+++++ +++++++...++.|.+||. ++. .+..+..+...+++++|+
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~-~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGN-HIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCC-EEEEEECSCSBEEEEEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECC-CCC-EEEEEECCCCCcEEEEEe
Confidence 9999986 55 3 1223333345678899988 6778877777789999998 333 344444556679999998
Q ss_pred -CCCc
Q 005123 408 -PIGY 411 (713)
Q Consensus 408 -pdg~ 411 (713)
+++.
T Consensus 280 g~d~~ 284 (326)
T 2ghs_A 280 GPDAS 284 (326)
T ss_dssp STTSC
T ss_pred cCCCC
Confidence 7764
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.38 E-value=6.5e-11 Score=138.44 Aligned_cols=255 Identities=10% Similarity=0.034 Sum_probs=179.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEecc-C----CCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeee
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAH-D----HAIRSMVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h-~----~~V~sl~~spdg~~L~sgs~------DG~I~vwdl~~~~~~~~ 223 (713)
++..|++++.|+.|+.+|..+++.+-.+... . ..+.+.-.. .+..+++++. ++.|+.||.++++.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 4668889999999999999999998887754 2 122211111 2345555543 69999999999998776
Q ss_pred eccCCC--------------------------------CeeEEEEecCCCEEEEEECCC-------------------eE
Q 005123 224 KSAHKE--------------------------------SVRDLSFCRTDLKFCSCSDDT-------------------TV 252 (713)
Q Consensus 224 ~~~~~~--------------------------------~V~~l~fs~dg~~Las~s~Dg-------------------~I 252 (713)
+..... ....+++++++.+|++++.++ +|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 643211 113578888888888887664 59
Q ss_pred EEEEcCCCeeEEEEcc--CC-------CceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceEEEEccCC-CC-----
Q 005123 253 KVWDFARCQEERSLTG--HG-------WDVKSVDWHPTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHK-NM----- 314 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~--h~-------~~V~sl~~spdg---~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-~~----- 314 (713)
..+|.++++.+..+.. |. .....+....+| +.|++++.+|.|+++|.++++.+..+.... ..
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 9999999998877653 21 122233333366 688999999999999999999887664221 00
Q ss_pred -----e------------------------EEEEEcCCCCEEEEEECC--------------------------------
Q 005123 315 -----V------------------------LCVKWNQNGNWVLTASKD-------------------------------- 333 (713)
Q Consensus 315 -----I------------------------~si~fspdg~~Latgs~D-------------------------------- 333 (713)
+ ..++|++++.+|++...+
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 1 146888988888876432
Q ss_pred -----------CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeE
Q 005123 334 -----------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (713)
Q Consensus 334 -----------g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~ 402 (713)
+.|..||+++++.+..+.. ...+....+.. .+.++++++.||.|++||.++++.+..+...+.....
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 523 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA 523 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccC
Confidence 7899999999999888763 33344444555 5667888899999999999999887777665544445
Q ss_pred EEEEcCCCcE
Q 005123 403 DLAWHPIGYL 412 (713)
Q Consensus 403 ~l~~spdg~~ 412 (713)
-+.|..+|..
T Consensus 524 p~~y~~~G~~ 533 (677)
T 1kb0_A 524 PSTYMVDGRQ 533 (677)
T ss_dssp CEEEEETTEE
T ss_pred CEEEEeCCEE
Confidence 5667777743
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.37 E-value=9.2e-11 Score=137.42 Aligned_cols=255 Identities=8% Similarity=0.004 Sum_probs=174.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEecc--C---CCEEE-EEEccCCCEEEEEe------CCCcEEEEEcCCCceee
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAH--D---HAIRS-MVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h--~---~~V~s-l~~spdg~~L~sgs------~DG~I~vwdl~~~~~~~ 222 (713)
++.+|++++.|+.|+.+|.++++.+-.+... . ..+.+ ..+ .++ .+++++ .+|.|..||.++++.+.
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 3568889999999999999999988776542 1 11111 111 144 444443 36899999999999876
Q ss_pred eeccCC-------------------------------CCeeEEEEecCCCEEEEEECCCe-------------------E
Q 005123 223 NKSAHK-------------------------------ESVRDLSFCRTDLKFCSCSDDTT-------------------V 252 (713)
Q Consensus 223 ~~~~~~-------------------------------~~V~~l~fs~dg~~Las~s~Dg~-------------------I 252 (713)
.+.... .....++++++..+|++++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 654210 01125788888889999887764 9
Q ss_pred EEEEcCCCeeEEEEccC--C-------CceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceEEEEccCC-CC-----
Q 005123 253 KVWDFARCQEERSLTGH--G-------WDVKSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK-NM----- 314 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~h--~-------~~V~sl~~spdg~---~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-~~----- 314 (713)
..||.++++.+..+... . ..+....+..+++ .|+.++.+|.|+++|.++++.+....... .+
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 99999999998877542 1 1122222222454 78899999999999999999875432111 00
Q ss_pred ---------------------------------eEEEEEcCCCCEEEEEEC-----------------------------
Q 005123 315 ---------------------------------VLCVKWNQNGNWVLTASK----------------------------- 332 (713)
Q Consensus 315 ---------------------------------I~si~fspdg~~Latgs~----------------------------- 332 (713)
-..++|+++..+|++.+.
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 112678888887776532
Q ss_pred ----------------CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc
Q 005123 333 ----------------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396 (713)
Q Consensus 333 ----------------Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~ 396 (713)
++.|+.||+++++.+..+..+... ....++. .+.++++++.||.|++||.++++.+.++...
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-cCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 377999999999999888755432 3234444 5778889999999999999999877776655
Q ss_pred cCCCeEEEEEcCCCcEE
Q 005123 397 HDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 397 h~~~V~~l~~spdg~~l 413 (713)
+.....-+.|..+|+..
T Consensus 516 ~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 516 SGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp SCCCSCCEEEEETTEEE
T ss_pred CCcccCceEEEECCEEE
Confidence 44444556777888433
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.36 E-value=2.8e-10 Score=119.27 Aligned_cols=234 Identities=7% Similarity=-0.067 Sum_probs=154.2
Q ss_pred EEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 179 EMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 179 ~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
+..+..........+|+++++ ++++...++.|..|+. +++. ..+......+..++++++++++++...++.|.+||.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 334444556678899999998 5556667889999988 4443 344455677899999999997666556689999998
Q ss_pred CCCeeEEEEcc----CCCceEEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCceEEEEccCCCCeE
Q 005123 258 ARCQEERSLTG----HGWDVKSVDWHPTKSLLVS----GGK-------------DSLVKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 258 ~~~~~~~~l~~----h~~~V~sl~~spdg~~L~s----gs~-------------Dg~I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
. ++....... ....+++++++++|+++++ |.. .+.|+.||.++++..... ......
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 6 443222211 1235778999999997775 332 256888888776654433 345678
Q ss_pred EEEEcCCCCEEEEEECC------CeEEEEECCCCee--EEEe-ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 317 CVKWNQNGNWVLTASKD------QIIKLYDIRAMKE--LESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 317 si~fspdg~~Latgs~D------g~I~IwDl~t~~~--l~~~-~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
.++|++|+++|+++... +.|++||+..... ...+ .........+++++ +++++++. .+ .|.+|+.+ +
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~~-~~-gv~~~~~~-g 267 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSSS-GT-GVCVFDSD-G 267 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEECC-SS-EEEEECTT-S
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEec-CC-cEEEECCC-C
Confidence 89999999988887765 7899999876441 1111 11234456788888 66755544 44 59999873 3
Q ss_pred CceEEEecccCCCeEEEEEcCCCcEE-EEeCCcEEEE
Q 005123 388 TPQVEIHNVHDNTVWDLAWHPIGYLL-CSNDHTTKFW 423 (713)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~spdg~~l-aS~Dg~v~iW 423 (713)
+ .+..+.... .+.+++|++++..| ++.++.+..+
T Consensus 268 ~-~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 268 Q-LLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp C-EEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred C-EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 3 333333333 58899999887443 4444444433
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.34 E-value=3.7e-13 Score=145.86 Aligned_cols=195 Identities=11% Similarity=0.053 Sum_probs=117.3
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCC-Cee-
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE-SVR- 232 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~-~V~- 232 (713)
++.+|++++.|+.|+.||..+++.+-.+.. +.+.+..+..+++.+++++.||.|+.||.++++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999888776 4555555666777888888999999999988877655433211 111
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC
Q 005123 233 DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
+..+. ++..|++++.|+.|+.||.++++.+..+..+. .+.+++++..|++++.|+.|+.||.++++.+..+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 11111 34567788889999999999998887766443 23455678889999999999999999998776654211
Q ss_pred CCeEEEEEcCCC---CEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 313 NMVLCVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 313 ~~I~si~fspdg---~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
....+++.+. ..+++++.|+.|+.||.++++.+..+.. ...+..
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~ 207 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVA 207 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEE
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEE
Confidence 1223333322 5677889999999999999999888773 344433
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.32 E-value=1.5e-10 Score=135.69 Aligned_cols=274 Identities=9% Similarity=0.047 Sum_probs=177.8
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCC----------E-EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA----------I-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~----------V-~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+..|++++.++.|+.+|..+++.+-++...... + ..+++ ++..|++++.|+.|..+|.++++.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 567888888999999999999988777543221 1 11222 4678888999999999999999988766
Q ss_pred ccC-C----CCeeEEEEecCCCEEEEEE-----CCCeEEEEEcCCCeeEEEEccCC------------------------
Q 005123 225 SAH-K----ESVRDLSFCRTDLKFCSCS-----DDTTVKVWDFARCQEERSLTGHG------------------------ 270 (713)
Q Consensus 225 ~~~-~----~~V~~l~fs~dg~~Las~s-----~Dg~I~iwDl~~~~~~~~l~~h~------------------------ 270 (713)
... . ..+.+.-...++..++.++ .++.|+.||.++++.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 442 1 1111111111444333322 37899999999999887764210
Q ss_pred -------CceEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEcc--CC-------CCe
Q 005123 271 -------WDVKSVDWHPTKSLLVSGGKDSL-------------------VKLWDAKSGRELCSFHG--HK-------NMV 315 (713)
Q Consensus 271 -------~~V~sl~~spdg~~L~sgs~Dg~-------------------I~IwDl~t~~~~~~~~~--h~-------~~I 315 (713)
.....++++++.++|++++.++. |..||.++++.+..+.. |. ..+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 01125788888889999887763 99999999999887754 21 112
Q ss_pred EEEEEcCCCC---EEEEEECCCeEEEEECCCCeeEEEeecCC-CC-----------------------------------
Q 005123 316 LCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHR-KD----------------------------------- 356 (713)
Q Consensus 316 ~si~fspdg~---~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-~~----------------------------------- 356 (713)
.......+|+ .|++++.+|.|+++|.++++.+....... ..
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G 387 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG 387 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence 2222223565 78899999999999999999875433111 00
Q ss_pred ---eEEEEEeCCCCCEEEEEEC---------------------------------------------CCcEEEEEcCCCC
Q 005123 357 ---VTALAWHPFHEEYFVSGSL---------------------------------------------DGSIFHWLVGHET 388 (713)
Q Consensus 357 ---V~sl~fsp~~~~~lasgs~---------------------------------------------DG~I~Iwd~~~~~ 388 (713)
-..++|++ +..+|++.+. +|.|+.||+.+++
T Consensus 388 g~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 388 AHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp SSCSSCCEEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred ccCCCcceECC-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 11267888 4555555422 3779999998887
Q ss_pred ceEEEecccCCCeEEEEEc-CCCcEE-EEeCCcEEEEecCCCCCcccc
Q 005123 389 PQVEIHNVHDNTVWDLAWH-PIGYLL-CSNDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~s-pdg~~l-aS~Dg~v~iWd~~~~~~~~~~ 434 (713)
.+.+... + ..+..-.+. ..+.++ ++.|+.|++||.+..+...+.
T Consensus 467 ~~W~~~~-~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 467 AAWEVPY-V-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp EEEEEEE-S-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eEeEccC-C-CCccCccceECCCEEEEECCCCcEEEEECCCCccceee
Confidence 6555433 2 223322333 344444 348999999999776655443
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.30 E-value=5.4e-11 Score=124.91 Aligned_cols=265 Identities=11% Similarity=0.015 Sum_probs=176.8
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
..+.++....++. |++++.+ |+.||. +++....+......+....+. +..|++++.++.|..+|.+ ++.....
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~ 132 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRF 132 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence 3456777776665 5555544 888886 444332222222222233333 5677888888999999988 7666665
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~ 304 (713)
......+.++....++. |++++.++.|..||.. ++.+..+......+.++.+..++.++ +++ +.|..|| .+++.
T Consensus 133 ~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~ 206 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTE 206 (330)
T ss_dssp ECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCE
T ss_pred cCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcE
Confidence 55555667777766665 6667788999999998 77766666556677788887777644 444 7899999 77877
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 305 ~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+..+......+.++.+..++. |.+++.++.|..+|. +++.+..+......+.++.+.. +..|..++.+|.|..+|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~--~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 207 KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN--TDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT--TSCEEEECTTCEEEEECT
T ss_pred EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC--CCeEEEecCCCCEEEECC
Confidence 777766666788888887775 566777888999984 5666666665444445555543 445677888889999985
Q ss_pred CCCCceEEEecccCCCeEEEEEcCCCcEEE-EeCCcEEEEecCCC
Q 005123 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCRNRP 428 (713)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~~~~ 428 (713)
++... .........+.++..+.++.+.+ +.+|.+++...+..
T Consensus 283 -~g~~~-~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 283 -DGTEK-WNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp -TSCEE-EEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred -CCcEE-EEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence 44433 33333456678888877776554 58999998876443
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=1.5e-10 Score=135.37 Aligned_cols=272 Identities=8% Similarity=0.029 Sum_probs=182.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCC-----------CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-----------AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~-----------~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+..|++++.++.|+.+|..+++.+-++..... ....+++ ++..|++++.|+.|..+|..+++.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 55788888889999999999998877764321 1122333 4678888999999999999999988777
Q ss_pred ccC-C----CCeeEEEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEEEccCCCc---------------------
Q 005123 225 SAH-K----ESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWD--------------------- 272 (713)
Q Consensus 225 ~~~-~----~~V~~l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~l~~h~~~--------------------- 272 (713)
... . ..+.+--...+ ..+++++. ++.|+.||.++++.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 544 1 12221111113 44555443 789999999999988776532211
Q ss_pred -----------eEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEcc--CC-------C
Q 005123 273 -----------VKSVDWHPTKSLLVSGGKDS-------------------LVKLWDAKSGRELCSFHG--HK-------N 313 (713)
Q Consensus 273 -----------V~sl~~spdg~~L~sgs~Dg-------------------~I~IwDl~t~~~~~~~~~--h~-------~ 313 (713)
...+++++++++|++++.++ .|..+|.++++.+..+.. +. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 13578888888898887664 499999999999887753 21 1
Q ss_pred CeEEEEEcCCC---CEEEEEECCCeEEEEECCCCeeEEEeecCCC-----------Ce----------------------
Q 005123 314 MVLCVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRK-----------DV---------------------- 357 (713)
Q Consensus 314 ~I~si~fspdg---~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~-----------~V---------------------- 357 (713)
....+....+| +.|++++.+|.|+++|.++++.+..+..... .+
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 22233333477 6889999999999999999999876653210 01
Q ss_pred --EEEEEeCCCCCEEEEEEC-------------------------------------------CCcEEEEEcCCCCceEE
Q 005123 358 --TALAWHPFHEEYFVSGSL-------------------------------------------DGSIFHWLVGHETPQVE 392 (713)
Q Consensus 358 --~sl~fsp~~~~~lasgs~-------------------------------------------DG~I~Iwd~~~~~~~~~ 392 (713)
..+++++ +..++++... .|.|..||+.+++...+
T Consensus 394 ~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 394 NWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp CSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred CCCCceEcC-CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 1467888 4555555432 27899999988876555
Q ss_pred EecccCCCeEEEEEcCCC-cEE-EEeCCcEEEEecCCCCCccc
Q 005123 393 IHNVHDNTVWDLAWHPIG-YLL-CSNDHTTKFWCRNRPGDTAR 433 (713)
Q Consensus 393 ~~~~h~~~V~~l~~spdg-~~l-aS~Dg~v~iWd~~~~~~~~~ 433 (713)
... ...++...+..++ .++ ++.|+.+++||....+...+
T Consensus 473 ~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 473 VEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp EEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cCC--CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence 432 3344444454444 333 34899999999976655443
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.30 E-value=2.2e-10 Score=123.63 Aligned_cols=233 Identities=9% Similarity=-0.087 Sum_probs=156.1
Q ss_pred cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEEcCCCceeeeeccC-------CC
Q 005123 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMNNVKANKSAH-------KE 229 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs----------~DG~I~vwdl~~~~~~~~~~~~-------~~ 229 (713)
.|.++|..+++.+.++...... .+.+++|+++|+++. .++.|.+||+.+++.+.++... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999999876666 799999999999886 3688999999999998887543 13
Q ss_pred CeeEEEEecCCCEEEEEEC--CCeEEE--EEcCCCeeEEEEccC------------------CCceEEEEE---------
Q 005123 230 SVRDLSFCRTDLKFCSCSD--DTTVKV--WDFARCQEERSLTGH------------------GWDVKSVDW--------- 278 (713)
Q Consensus 230 ~V~~l~fs~dg~~Las~s~--Dg~I~i--wDl~~~~~~~~l~~h------------------~~~V~sl~~--------- 278 (713)
....+.+++|+++|+++.. +..|.+ +|+.+ +..+... .+.+..+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 4678999999999999875 467888 88865 2222110 001111111
Q ss_pred -----------------cCCCCEEEEEeCCCcEEEEECCCCc--eEEEEccC------C----CCeEEEEEcCCCCEEEE
Q 005123 279 -----------------HPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGH------K----NMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 279 -----------------spdg~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h------~----~~I~si~fspdg~~Lat 329 (713)
.+++..++..+. +.|.+.|+.+.. .+..+... . .....++|++|++.|++
T Consensus 202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 222333344444 666677765432 11111100 0 11122689999998887
Q ss_pred EEC-C--------CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCceEEEecccCC
Q 005123 330 ASK-D--------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVHDN 399 (713)
Q Consensus 330 gs~-D--------g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~~~~~~~h~~ 399 (713)
+.. + +.+.++|+.+.+.+..+.... ....++|++++..++++.. .++.|.++|+.+.+.+..+.. ..
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v--g~ 357 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL--DK 357 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC--CS
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC--CC
Confidence 643 2 356799999999988886443 5889999995555788888 699999999988765544432 23
Q ss_pred CeEEEEEcC
Q 005123 400 TVWDLAWHP 408 (713)
Q Consensus 400 ~V~~l~~sp 408 (713)
..+.+++.+
T Consensus 358 ~P~~i~~~~ 366 (368)
T 1mda_H 358 GPESLSVQN 366 (368)
T ss_dssp CCCEEECCC
T ss_pred CCCEEEeec
Confidence 445555543
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.29 E-value=8.9e-09 Score=105.40 Aligned_cols=251 Identities=6% Similarity=-0.017 Sum_probs=160.7
Q ss_pred CEEEEEECCCcEEEEeCCCCce-----EEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccCCCC
Q 005123 157 RRLITGSQSGEFTLWNGQSFNF-----EMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKES 230 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~-----~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~~~~ 230 (713)
.+|+.+.. +.|+.+++..... ...+......+..++|+++++.|+.++ .++.|.+++.+..............
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 35555553 4788888765432 122222234678999999777666555 5679999998876544433333357
Q ss_pred eeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEE
Q 005123 231 VRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELC 306 (713)
Q Consensus 231 V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~---Dg~I~IwDl~t~~~~~ 306 (713)
...+++++++..|+.+. .++.|.++|+........+.........+++++++..|+.+.. .+.|..++++......
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 88999998766655554 5679999998654333333323356789999997666666554 3678888886433222
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 307 SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 307 ~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
...........+++++++++|+++. ..+.|.++|+........+.. ......++.. ++.++++...++.|.++|..
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence 2223345678999999877776555 567899999985544333332 3345667653 45566666567899999987
Q ss_pred CCCceEEEecccCCCeEEEEEcCCCc
Q 005123 386 HETPQVEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 386 ~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (713)
+++....+..+.....+.|++.+++.
T Consensus 238 ~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 238 ISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCceEEEccccccccceeeecCccC
Confidence 76655444433223467788877764
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.26 E-value=1.5e-12 Score=140.98 Aligned_cols=205 Identities=11% Similarity=0.020 Sum_probs=118.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC-ceE-
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVK- 274 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~-~V~- 274 (713)
++..|++++.||.|+.||..+++.+..+.. ..+.+..+..++..+++++.|+.|+.||.++++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 578999999999999999999998887765 4555555666777888888999999999988877666543211 111
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC
Q 005123 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
+..+. ++..|++++.|+.|+.||.++|+.+.++..+. .+.+++++..|++++.|+.|+.||.++++.+..+..+.
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 11111 34577888889999999999999887776443 23456688889999999999999999998876654321
Q ss_pred CCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeE-EEEEcCCCcE
Q 005123 355 KDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW-DLAWHPIGYL 412 (713)
Q Consensus 355 ~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~-~l~~spdg~~ 412 (713)
....+++.+. +..+++++.||.|+.||.++++...... ....+. ...++.++.+
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--YASPVVAFYVWQREGLR 217 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSSCE
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec--CCCceEEEEEecCCceE
Confidence 1222232210 1457778899999999998877544433 233443 3445566643
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=1.8e-10 Score=123.10 Aligned_cols=227 Identities=7% Similarity=-0.042 Sum_probs=155.5
Q ss_pred CCCCceEEEEEccCCCEEEEEEC-----CCcEEEEeCCCCceEEEEecc------CCCEEEEEEccCCCEEEEEe----C
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHNDNWMVSGD----D 206 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~-----dg~V~Iwd~~t~~~~~~l~~h------~~~V~sl~~spdg~~L~sgs----~ 206 (713)
.|...+.+|+++++++++++-.. +..|.+||+.+++.+..+... ...+..+++++++..++++. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 56778999999999876555433 578999999999877776542 23568999997665655444 5
Q ss_pred CCcEEEEEcCCCceeeeeccCCCCee-EEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 207 GGAIKYWQNNMNNVKANKSAHKESVR-DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 207 DG~I~vwdl~~~~~~~~~~~~~~~V~-~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
++.|.+||+.+++....+..|..... ...+..++..+.+.+.+++++.|. ..+..|+|+++++.|
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWL 209 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEE
Confidence 78999999998887766544322111 134455777777777888876663 246789999999988
Q ss_pred EEEeCCC-cEEEEECC---CCc-----eE--EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec-C
Q 005123 286 VSGGKDS-LVKLWDAK---SGR-----EL--CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-H 353 (713)
Q Consensus 286 ~sgs~Dg-~I~IwDl~---t~~-----~~--~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-h 353 (713)
+++..++ .|..+|.. .+. .. ....++......++++++|+++++...++.|.+||..+++....... +
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~ 289 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK 289 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG
T ss_pred EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc
Confidence 8887766 45555532 111 00 01112334567799999999888888899999999855664333332 2
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 354 ~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
...+++++|.+ ++.++++.+..+.+.+|.
T Consensus 290 ~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 290 LSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred eecCCeeEECC-CCcEEEEeCccccccccc
Confidence 45689999998 677877777655554443
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.24 E-value=7e-09 Score=113.05 Aligned_cols=219 Identities=12% Similarity=0.067 Sum_probs=152.8
Q ss_pred cCCCEEEEE-ECCCcEEEEeCCCC----ceEEEEe-------ccCCCEEEEEEccCCCEEEEEeCC------CcEEEEEc
Q 005123 154 PTGRRLITG-SQSGEFTLWNGQSF----NFEMILQ-------AHDHAIRSMVWSHNDNWMVSGDDG------GAIKYWQN 215 (713)
Q Consensus 154 pdg~~Latg-s~dg~V~Iwd~~t~----~~~~~l~-------~h~~~V~sl~~spdg~~L~sgs~D------G~I~vwdl 215 (713)
.++++|++. ..++.|+|+|+.+. +.++++. .....-..+..++++ +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 788887765 45788999998765 6666663 112245667888999 66665544 78999999
Q ss_pred CCCceeeeeccCCC---CeeEEEEecCCCEEEEEE-------------------CCCeEEEEEcCCCeeEEEEccCC--C
Q 005123 216 NMNNVKANKSAHKE---SVRDLSFCRTDLKFCSCS-------------------DDTTVKVWDFARCQEERSLTGHG--W 271 (713)
Q Consensus 216 ~~~~~~~~~~~~~~---~V~~l~fs~dg~~Las~s-------------------~Dg~I~iwDl~~~~~~~~l~~h~--~ 271 (713)
++.+++.++..... .-.++.|+++++.++++. .+.+|.+||+.+++.+.++.... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99998888763322 234688899999888885 36899999999988887776421 3
Q ss_pred ceEEEEE--cCCCCEEEEEeC------CCcEEEEECCCCce--EEEE--ccC----------------CCCeEEEEEcCC
Q 005123 272 DVKSVDW--HPTKSLLVSGGK------DSLVKLWDAKSGRE--LCSF--HGH----------------KNMVLCVKWNQN 323 (713)
Q Consensus 272 ~V~sl~~--spdg~~L~sgs~------Dg~I~IwDl~t~~~--~~~~--~~h----------------~~~I~si~fspd 323 (713)
....|.| +|+++++++++. +++|.+|..+.++. +..+ ... ......|.+|+|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 4556666 999998888774 56787776554431 1111 110 245788999999
Q ss_pred CCEEEEEEC-CCeEEEEECCC---CeeEEEeecCC--------------CCeEEEEEeCCCCCEEEEEE
Q 005123 324 GNWVLTASK-DQIIKLYDIRA---MKELESFRGHR--------------KDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 324 g~~Latgs~-Dg~I~IwDl~t---~~~l~~~~~h~--------------~~V~sl~fsp~~~~~lasgs 374 (713)
|++|+++.. .+.|.+||+.. .+.+..+.... ..-..+++++ ++++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 999998875 67999999852 35555544321 1257889999 677766665
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.23 E-value=9.7e-11 Score=122.98 Aligned_cols=256 Identities=13% Similarity=0.057 Sum_probs=170.8
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCC
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~ 230 (713)
.+..++ .|++++.++.|..|| .+++....+......+.++....++. |++++.+ |..+|. +++....+......
T Consensus 26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~ 99 (330)
T 3hxj_A 26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAI 99 (330)
T ss_dssp EECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC----
T ss_pred eEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCc
Confidence 343445 466777888899999 78777655554455567777766654 4555544 888885 55544443333333
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc
Q 005123 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (713)
Q Consensus 231 V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~ 310 (713)
.....+. +..|.+++.++.|..+|.. ++....+......+.++....++. |++++.++.|..||.+ ++.+..+..
T Consensus 100 ~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 100 VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp -CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence 3334443 5667888889999999988 666666655555667777777776 6667788999999998 887777765
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 311 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 311 h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
....+.++.+..++.+++ ++ +.|..|| .+++.+..+......+.++.... ++ .|..++.++.|..+|. ++...
T Consensus 175 ~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-~g~~~ 247 (330)
T 3hxj_A 175 NDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-DGTEK 247 (330)
T ss_dssp SSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-TSCEE
T ss_pred CCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-CCCEe
Confidence 566677788877777544 44 7899999 77887777766666788888876 44 4556677888888874 33333
Q ss_pred EEEecccCCCeEEEEEcCCCcEEE-EeCCcEEEEec
Q 005123 391 VEIHNVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCR 425 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~ 425 (713)
.. .......+.++.+..++.+.+ +.++.|..+|.
T Consensus 248 ~~-~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 248 WR-FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp EE-EECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred EE-eeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 32 223334455667776776554 47778888874
No 236
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=2.5e-09 Score=124.81 Aligned_cols=273 Identities=9% Similarity=0.054 Sum_probs=174.5
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCC----------E-EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA----------I-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~----------V-~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+..|++++.++.|+.+|..+++.+-++...... + ..+++ ++..|++++.|+.|..+|.++++.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 557888888999999999999988777543211 0 12233 3567888899999999999999988776
Q ss_pred ccCC----CCeeE-EEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEEEccCC-----------------------
Q 005123 225 SAHK----ESVRD-LSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHG----------------------- 270 (713)
Q Consensus 225 ~~~~----~~V~~-l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~l~~h~----------------------- 270 (713)
.... ..+.+ ..+ .++ .+++++. ++.|+.||.++++.+..+....
T Consensus 144 ~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 11111 111 134 4454432 5899999999999887765210
Q ss_pred --------CceEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEcc--CC-------CC
Q 005123 271 --------WDVKSVDWHPTKSLLVSGGKDS-------------------LVKLWDAKSGRELCSFHG--HK-------NM 314 (713)
Q Consensus 271 --------~~V~sl~~spdg~~L~sgs~Dg-------------------~I~IwDl~t~~~~~~~~~--h~-------~~ 314 (713)
.....++++++.+++++++.++ .|..+|.++++.+..+.. |. ..
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0112468888888888888766 399999999999888764 22 22
Q ss_pred eEEEEEcCCCC---EEEEEECCCeEEEEECCCCeeEEEeecCCC------------Ce----------------------
Q 005123 315 VLCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHRK------------DV---------------------- 357 (713)
Q Consensus 315 I~si~fspdg~---~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~------------~V---------------------- 357 (713)
.....+..+|+ .|++++.+|.|+++|.++++.+..+..... .+
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 22233334665 688999999999999999998854432210 00
Q ss_pred --EEEEEeCCCCCEEEEE-----------------------------------ECCCcEEEEEcCCCCceEEEecccCCC
Q 005123 358 --TALAWHPFHEEYFVSG-----------------------------------SLDGSIFHWLVGHETPQVEIHNVHDNT 400 (713)
Q Consensus 358 --~sl~fsp~~~~~lasg-----------------------------------s~DG~I~Iwd~~~~~~~~~~~~~h~~~ 400 (713)
..++++++.+.+++.. ..+|.|..||+.+++...+.... ..
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~ 459 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--TH 459 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SS
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CC
Confidence 1256777333333211 12478999999888765554432 22
Q ss_pred eEEEEEc-CCCcEE-EEeCCcEEEEecCCCCCcccc
Q 005123 401 VWDLAWH-PIGYLL-CSNDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 401 V~~l~~s-pdg~~l-aS~Dg~v~iWd~~~~~~~~~~ 434 (713)
+....+. .++.++ ++.|+.|++||.+..+...+.
T Consensus 460 ~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 460 WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 3222222 334444 448999999998765554443
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.15 E-value=4.3e-09 Score=114.69 Aligned_cols=220 Identities=10% Similarity=0.053 Sum_probs=145.9
Q ss_pred cCCCEEEE-EeCCCcEEEEEcCCC----ceeeeec-------cCCCCeeEEEEecCCCEEEEEECC------CeEEEEEc
Q 005123 196 HNDNWMVS-GDDGGAIKYWQNNMN----NVKANKS-------AHKESVRDLSFCRTDLKFCSCSDD------TTVKVWDF 257 (713)
Q Consensus 196 pdg~~L~s-gs~DG~I~vwdl~~~----~~~~~~~-------~~~~~V~~l~fs~dg~~Las~s~D------g~I~iwDl 257 (713)
.++++|++ +..++.|.|+|+.+. ++.+++. .....-..+.+++++ .++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887775 556789999999765 5555542 111244567788999 66666555 78999999
Q ss_pred CCCeeEEEEccCC---CceEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCceEEEEccC-C-C
Q 005123 258 ARCQEERSLTGHG---WDVKSVDWHPTKSLLVSGG-------------------KDSLVKLWDAKSGRELCSFHGH-K-N 313 (713)
Q Consensus 258 ~~~~~~~~l~~h~---~~V~sl~~spdg~~L~sgs-------------------~Dg~I~IwDl~t~~~~~~~~~h-~-~ 313 (713)
++.+.+.++.... ..-..+.|+++++.+++.. .+.+|.+||+.+++.+.++... . .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 9999988886332 2234688899999888874 3688999999998888777642 1 2
Q ss_pred CeEEEEE--cCCCCEEEEEEC------CCeEEEEECCCCee--EEEe--ecC----------------CCCeEEEEEeCC
Q 005123 314 MVLCVKW--NQNGNWVLTASK------DQIIKLYDIRAMKE--LESF--RGH----------------RKDVTALAWHPF 365 (713)
Q Consensus 314 ~I~si~f--spdg~~Latgs~------Dg~I~IwDl~t~~~--l~~~--~~h----------------~~~V~sl~fsp~ 365 (713)
....|.| +++++++++++. +++|.+|..+.++. +..+ ... ......|.+|+
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~- 330 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL- 330 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT-
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC-
Confidence 3455656 999999888774 56887776654321 1111 110 24578899999
Q ss_pred CCCEEE-EEECCCcEEEEEcCCCCc--eEE-EecccC-------------CCeEEEEEcCCCcEEEEeC
Q 005123 366 HEEYFV-SGSLDGSIFHWLVGHETP--QVE-IHNVHD-------------NTVWDLAWHPIGYLLCSND 417 (713)
Q Consensus 366 ~~~~la-sgs~DG~I~Iwd~~~~~~--~~~-~~~~h~-------------~~V~~l~~spdg~~laS~D 417 (713)
++++|. +.-..+.|.+||+..... ++. +..+-. +.-..+++++||++|...+
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 455554 444578999999964322 222 222100 1257899999997775433
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.12 E-value=1.2e-08 Score=119.03 Aligned_cols=254 Identities=8% Similarity=0.053 Sum_probs=166.3
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccC----CCEEE-EEEccCCCEEEEEeC------CCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRS-MVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~----~~V~s-l~~spdg~~L~sgs~------DG~I~vwdl~~~~~~~~~ 224 (713)
+.+|++++.|+.|+.+|.++++.+-.+.... ..+.+ ..+ .+..++++.. +|.|..+|.++++.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 5678888999999999999999887776421 11111 111 1345555533 589999999999987766
Q ss_pred ccCC-------------------------------CCeeEEEEecCCCEEEEEECCC-------------------eEEE
Q 005123 225 SAHK-------------------------------ESVRDLSFCRTDLKFCSCSDDT-------------------TVKV 254 (713)
Q Consensus 225 ~~~~-------------------------------~~V~~l~fs~dg~~Las~s~Dg-------------------~I~i 254 (713)
.... .....+++.++..+++.++.++ .|..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 4210 0112467888888888887766 3999
Q ss_pred EEcCCCeeEEEEccC--C-------CceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceEEEEccCC----------
Q 005123 255 WDFARCQEERSLTGH--G-------WDVKSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK---------- 312 (713)
Q Consensus 255 wDl~~~~~~~~l~~h--~-------~~V~sl~~spdg~---~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~---------- 312 (713)
+|.++++.+..+... . ..+....+..+++ .|++++.+|.|+++|.++|+.+..+....
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 999999988777642 1 2222223333564 68899999999999999999885432111
Q ss_pred --CCe------------------------EEEEEcCCCCEEEEEE-----------------------------------
Q 005123 313 --NMV------------------------LCVKWNQNGNWVLTAS----------------------------------- 331 (713)
Q Consensus 313 --~~I------------------------~si~fspdg~~Latgs----------------------------------- 331 (713)
..+ ..++++++..++++..
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 000 1257777766665421
Q ss_pred -CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC
Q 005123 332 -KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 332 -~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (713)
.++.|+.||+++++.+..+..... +....+.. .+.++++++.||.|++||.++++.+.++.........-+.+..++
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G 512 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG 512 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CccceEEEEeCCCCcEEEEccCCCC-CcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECC
Confidence 237899999999999887764432 22223333 567888889999999999998887666554322111234445566
Q ss_pred cEE
Q 005123 411 YLL 413 (713)
Q Consensus 411 ~~l 413 (713)
++.
T Consensus 513 ~~y 515 (668)
T 1kv9_A 513 RQY 515 (668)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 239
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.11 E-value=3.4e-08 Score=104.11 Aligned_cols=238 Identities=11% Similarity=0.047 Sum_probs=156.5
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-------------------cCCCEEEEEEccCCCEEEEEe
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-------------------HDHAIRSMVWSHNDNWMVSGD 205 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-------------------h~~~V~sl~~spdg~~L~sgs 205 (713)
....+++|++++++|+++..++.|..||..+.+....... ....+..|++.+++..|++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 4567789999998888888899999999876554322210 013578999997444566665
Q ss_pred CCCcEEEEEcCCCceeeeecc----CCCCeeEEEEec-CCCEEEEEEC-----------------CCeEEEEEcCCCeeE
Q 005123 206 DGGAIKYWQNNMNNVKANKSA----HKESVRDLSFCR-TDLKFCSCSD-----------------DTTVKVWDFARCQEE 263 (713)
Q Consensus 206 ~DG~I~vwdl~~~~~~~~~~~----~~~~V~~l~fs~-dg~~Las~s~-----------------Dg~I~iwDl~~~~~~ 263 (713)
..+.|.++|..++........ ......++++.+ +++++++... ++.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 556688888776543222111 123578899999 8877666432 367899998776543
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc--eEEEEccCCCCeEEEEEcCCCCEEEEEEC--------
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASK-------- 332 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~I~IwDl~t~~--~~~~~~~h~~~I~si~fspdg~~Latgs~-------- 332 (713)
.... .......|+|++++++|+++ +.++.|.+||+.... ....+....+ ...+++.++|+++++...
T Consensus 179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 3322 22346689999999866665 456889999987521 1222221223 788999999987666544
Q ss_pred --CCeEEEEECCCCeeEEEeecCC----CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 333 --DQIIKLYDIRAMKELESFRGHR----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 333 --Dg~I~IwDl~t~~~l~~~~~h~----~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
.+.|.++|.. ++.+..+.... ..++++++. +++++++...++.|.++++...
T Consensus 257 ~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 257 RVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp CEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred CCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 4678888874 77777665442 356777763 5677777777888999987543
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.09 E-value=2.9e-07 Score=109.51 Aligned_cols=274 Identities=12% Similarity=0.102 Sum_probs=182.2
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-------cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-------HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-------h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
...|.++....++. |.+++.++-|.+||..+.+....... ....|.++....++.+.+ |+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 46788998888776 55555554599999887655433221 135699999988777555 4445 48889987
Q ss_pred CCceeeeec-------cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-------CCCceEEEEEcCCC
Q 005123 217 MNNVKANKS-------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-------HGWDVKSVDWHPTK 282 (713)
Q Consensus 217 ~~~~~~~~~-------~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-------h~~~V~sl~~spdg 282 (713)
++....... .....|.++....++. |.+|+.++-|.+||..+.... .+.. ....|.++..+.++
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCC
Confidence 776544321 1235799999888776 556777777999987554322 2211 23569999998877
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcc--------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee---
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRELCSFHG--------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--- 351 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~~~~~~~--------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~--- 351 (713)
+ |.+|+.++-|.+||..+++....... ....|.++....++++|.+|+.++-|.+||.++++......
T Consensus 369 ~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~ 447 (795)
T 4a2l_A 369 N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS 447 (795)
T ss_dssp C-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS
T ss_pred C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC
Confidence 6 66678777899999887654332211 23578999998888867778887789999998766433221
Q ss_pred -cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec------ccCCCeEEEEEcCCCcEEEEeCCcEEEEe
Q 005123 352 -GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN------VHDNTVWDLAWHPIGYLLCSNDHTTKFWC 424 (713)
Q Consensus 352 -~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~------~h~~~V~~l~~spdg~~laS~Dg~v~iWd 424 (713)
.....|.++.... ++++++.. . +.|.+||..++.. ..... .....|.++..+.++.+.++..+.|.+|+
T Consensus 448 ~l~~~~v~~i~~d~-~g~lwigt-~-~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~ 523 (795)
T 4a2l_A 448 QLVNENVYAILPDG-EGNLWLGT-L-SALVRFNPEQRSF-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFK 523 (795)
T ss_dssp CCSCSCEEEEEECS-SSCEEEEE-S-SCEEEEETTTTEE-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEEEEE
T ss_pred CcCCCeeEEEEECC-CCCEEEEe-c-CceeEEeCCCCeE-EEccccccccccCCceEEEEEECCCCCEEEEeCCceEEEe
Confidence 2345789998876 55655544 4 4588898765432 12211 12367999999999866655336788887
Q ss_pred cCC
Q 005123 425 RNR 427 (713)
Q Consensus 425 ~~~ 427 (713)
.+.
T Consensus 524 ~~~ 526 (795)
T 4a2l_A 524 QEG 526 (795)
T ss_dssp EET
T ss_pred CCC
Confidence 643
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=4.4e-09 Score=118.37 Aligned_cols=253 Identities=12% Similarity=0.088 Sum_probs=175.8
Q ss_pred EEEEECCCcEEEEeCCCCceEEEEecc---------------------------------C------CCEEEEEEcc---
Q 005123 159 LITGSQSGEFTLWNGQSFNFEMILQAH---------------------------------D------HAIRSMVWSH--- 196 (713)
Q Consensus 159 Latgs~dg~V~Iwd~~t~~~~~~l~~h---------------------------------~------~~V~sl~~sp--- 196 (713)
+.+|+..|.|+|+-+-+.+.++.+... . +.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 557788899999988877776654210 0 1122345555
Q ss_pred --CCCEEEEEeCC-CcEEEEEcCCCceeeeecc-CCCCeeEEEE-e-cCCCEEEEEEC------------------CCeE
Q 005123 197 --NDNWMVSGDDG-GAIKYWQNNMNNVKANKSA-HKESVRDLSF-C-RTDLKFCSCSD------------------DTTV 252 (713)
Q Consensus 197 --dg~~L~sgs~D-G~I~vwdl~~~~~~~~~~~-~~~~V~~l~f-s-~dg~~Las~s~------------------Dg~I 252 (713)
||++|+++..+ +.|.+.|+++.++...+.. .......+++ + ++++++++++. ++.|
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 78888877654 5699999999987775533 2356888888 4 89999988852 4579
Q ss_pred EEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q 005123 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS--------------------------------------LV 294 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg--------------------------------------~I 294 (713)
.++|.++.+.+..+.... ....++++++++++++++.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998888776433 467788999999999988654 36
Q ss_pred EEEECCC--Cce-EEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe------------eEEEeecCCCCeE
Q 005123 295 KLWDAKS--GRE-LCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK------------ELESFRGHRKDVT 358 (713)
Q Consensus 295 ~IwDl~t--~~~-~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~------------~l~~~~~h~~~V~ 358 (713)
.|.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ .+..+. -.....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~ 334 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPL 334 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcc
Confidence 6777776 444 344432 23567899999999988766 57799999999653 233332 345678
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcCCC---------CceEEEecccCCCe-----EEEEEcCCCcEEEE
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHE---------TPQVEIHNVHDNTV-----WDLAWHPIGYLLCS 415 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~~~---------~~~~~~~~~h~~~V-----~~l~~spdg~~laS 415 (713)
.++|++ ++..+++.-.|+.|.+||+.+. ...+..+..|-..- .++.+++||++|.+
T Consensus 335 h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 335 HTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp EEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred eEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 999999 5566677778999999999651 23444444443321 12245789988865
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.08 E-value=1.9e-07 Score=95.42 Aligned_cols=217 Identities=7% Similarity=-0.033 Sum_probs=146.1
Q ss_pred ceEEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeee
Q 005123 146 SINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~ 223 (713)
.+.+++|+++++.|+.+. .++.|.++|..+......+.........+++++++..|+.+. .++.|.+++++.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 478999999777666655 468999999887655444433335788999998776666554 567899999875443332
Q ss_pred eccCCCCeeEEEEecCCCEEEEEEC---CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDA 299 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~---Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl 299 (713)
..........+++++++..|+.+.. .+.|..+++..................++++++++.|+++. ..+.|.++|+
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence 2222356789999997776666654 36888888764332222223345688999999877665554 4678999999
Q ss_pred CCCceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCC-CCeEEEEEeCC
Q 005123 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPF 365 (713)
Q Consensus 300 ~t~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~-~~V~sl~fsp~ 365 (713)
+.......+. .......+++. +..|+++. .++.|.++|..+++.+..+.... .....+++.++
T Consensus 197 ~g~~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 197 AQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp TEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred CCCceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 8644333333 23345667664 45555555 56899999999999888876433 24677777773
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=1.8e-08 Score=103.28 Aligned_cols=204 Identities=13% Similarity=0.077 Sum_probs=144.2
Q ss_pred eEEEEeccC--CCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeccCC-CCeeEEEEecCCCEEEEEE-CCCe
Q 005123 178 FEMILQAHD--HAIRSMVWSHNDNWMVSGDD--GGAIKYWQNNMNNVKANKSAHK-ESVRDLSFCRTDLKFCSCS-DDTT 251 (713)
Q Consensus 178 ~~~~l~~h~--~~V~sl~~spdg~~L~sgs~--DG~I~vwdl~~~~~~~~~~~~~-~~V~~l~fs~dg~~Las~s-~Dg~ 251 (713)
.+.++. |. .....++|++|+.++++.+. ++.|.++|+.+++.+..+.... .....+++. ++.|+.+. .++.
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence 444453 33 24689999988644444443 5899999999999888764322 233455554 44555554 5789
Q ss_pred EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC-----CCeEEEEEcCCCCE
Q 005123 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNW 326 (713)
Q Consensus 252 I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-----~~I~si~fspdg~~ 326 (713)
|.++|..+.+.+.++...... ...+++|++.|+++..++.|.++|.++.+.+..+.-.. ..++.+.|. +++.
T Consensus 88 v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp EEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 999999999998888533112 23344567777777778999999999988887775321 246788888 7755
Q ss_pred EEEEECCCeEEEEECCCCeeEEEeecC-------------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 327 VLTASKDQIIKLYDIRAMKELESFRGH-------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t~~~l~~~~~h-------------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
++....++.|.+.|..+++.+..+... ......|+|++++.++++++...++|++.++...
T Consensus 165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 555546789999999999998887632 1356899999966778888888889999887543
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.08 E-value=3.6e-07 Score=108.64 Aligned_cols=272 Identities=10% Similarity=0.125 Sum_probs=180.5
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
|.++....+++ |.+++.++-|..||..+.+..... ......|.++....++.+.+ ++.++-|.+||..+++......
T Consensus 175 i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence 88888888875 555676556999998776654321 12356788988877766554 4444448889988766544322
Q ss_pred c-------CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-------CCCceEEEEEcCCCCEEEEEeCC
Q 005123 226 A-------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-------HGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 226 ~-------~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-------h~~~V~sl~~spdg~~L~sgs~D 291 (713)
. ....|.++....++.+.+ |+.+ -|.+||..+.+....... ....|.+|..+.++. |.+|+.+
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~ 329 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF 329 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS
T ss_pred CCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC
Confidence 1 235689998887777554 4455 589999877654433211 235799999998876 6667777
Q ss_pred CcEEEEECCCCceEEEEcc-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee--------cCCCC
Q 005123 292 SLVKLWDAKSGRELCSFHG-------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--------GHRKD 356 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~-------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~--------~h~~~ 356 (713)
+-|.+||..+.+.. .+.. ....|.++....+|+ |.+|+.++-|.+||..+++...... .....
T Consensus 330 ~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (795)
T 4a2l_A 330 GGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNN 407 (795)
T ss_dssp SCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSC
T ss_pred CCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCcc
Confidence 78999987654432 2211 245699999888877 5567777779999988765433221 12357
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec----ccCCCeEEEEEcCCCcEEEEeCCcEEEEecCC
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN----VHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~----~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~ 427 (713)
|.+++... ++++|..|+.++.|.+||.+++. ...+.. .....|.++....++.+.++..+.|.+|+.+.
T Consensus 408 v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~ 480 (795)
T 4a2l_A 408 IKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQ-VENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQ 480 (795)
T ss_dssp EEEEEEET-TTTEEEEEETTTEEEEEETTTCC-EEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTT
T ss_pred EEEEEEcC-CCCEEEEEeCcCceeEEeCCCCc-EEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCC
Confidence 89998876 56646667777789999986654 222221 23467999999988876655446677887643
No 245
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.07 E-value=2.4e-09 Score=115.45 Aligned_cols=209 Identities=9% Similarity=0.003 Sum_probs=137.3
Q ss_pred EEEEccCCCEEEEEE----------CCCcEEEEeCCCCceEEEEeccC-------CCEEEEEEccCCCEEEEEeC--CCc
Q 005123 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHD-------HAIRSMVWSHNDNWMVSGDD--GGA 209 (713)
Q Consensus 149 ~v~~spdg~~Latgs----------~dg~V~Iwd~~t~~~~~~l~~h~-------~~V~sl~~spdg~~L~sgs~--DG~ 209 (713)
.+++++|+++|+++. .++.|.+||..+++.+.++.... .....+++++||++|+++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999999886 36889999999999999986541 23568899999999998875 467
Q ss_pred EEE--EEcCCCceeeeeccC------------------CCCeeEEEE--------------------------ecCCCEE
Q 005123 210 IKY--WQNNMNNVKANKSAH------------------KESVRDLSF--------------------------CRTDLKF 243 (713)
Q Consensus 210 I~v--wdl~~~~~~~~~~~~------------------~~~V~~l~f--------------------------s~dg~~L 243 (713)
|.+ +|+.+ +..+... .+.+..+.+ ++++..+
T Consensus 149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 888 88765 1111100 000000100 2223333
Q ss_pred EEEECCCeEEEEEcCCCe--eEEEEccC-------C---CceEEEEEcCCCCEEEEEeC-C--------CcEEEEECCCC
Q 005123 244 CSCSDDTTVKVWDFARCQ--EERSLTGH-------G---WDVKSVDWHPTKSLLVSGGK-D--------SLVKLWDAKSG 302 (713)
Q Consensus 244 as~s~Dg~I~iwDl~~~~--~~~~l~~h-------~---~~V~sl~~spdg~~L~sgs~-D--------g~I~IwDl~t~ 302 (713)
+..+. +.|.+.|+.+.. .+..+... . .....++++++++.|+++.. + +.+.++|+.+.
T Consensus 226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~ 304 (368)
T 1mda_H 226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence 33333 566666664322 11111100 0 11122789999998887643 2 35679999999
Q ss_pred ceEEEEccCCCCeEEEEEcCCCCE-EEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 303 RELCSFHGHKNMVLCVKWNQNGNW-VLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 303 ~~~~~~~~h~~~I~si~fspdg~~-Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
+.+.++... .....|+|++||++ +++.. .++.|.++|+.+++.+.++..... ...+++.
T Consensus 305 ~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 305 QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred eEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 988877533 36889999999985 55555 589999999999999998875443 3455554
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.07 E-value=6.2e-08 Score=99.31 Aligned_cols=194 Identities=7% Similarity=-0.019 Sum_probs=139.8
Q ss_pred CceEEEEEccCCCEEEEEE-C--CCcEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCc
Q 005123 145 CSINRVLWTPTGRRLITGS-Q--SGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs-~--dg~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~ 219 (713)
.....++|++|+ .|+.++ . ++.|.++|..+++.+..+.... .....+++. ++.|+ +.-.++.|.++|..+.+
T Consensus 21 ~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 21 AFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred CCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 346899999986 455544 2 5799999999999988876422 233355664 45555 44567899999999998
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-----CceEEEEEcCCCCEEEEEeCCCcE
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-----~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
.+..+..... ....+++|++.|+++..+++|.++|.++.+.+..+.... ..++.+.|. ++..++....++.|
T Consensus 98 v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 98 NIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence 8887754311 123455688888888788999999999988877765321 246788888 67555555567899
Q ss_pred EEEECCCCceEEEEccC-------------CCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCC
Q 005123 295 KLWDAKSGRELCSFHGH-------------KNMVLCVKWNQNGNWVLT-ASKDQIIKLYDIRAM 344 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h-------------~~~I~si~fspdg~~Lat-gs~Dg~I~IwDl~t~ 344 (713)
.+.|.++++.+..+... ....+.|+|+++++.|++ +....+|.+.|+...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99999999998887531 135689999999876665 446778888887643
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.05 E-value=2.2e-08 Score=114.62 Aligned_cols=252 Identities=9% Similarity=0.019 Sum_probs=161.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccC----CCEEE-EEEccCCCEEEEEeC------CCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRS-MVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~----~~V~s-l~~spdg~~L~sgs~------DG~I~vwdl~~~~~~~~~ 224 (713)
+..|++++.|+.|+.+|.++++.+-.+.... ..+.+ ... .+..+++++. ++.|..+|.++++.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5678888899999999999999887665322 02221 111 1345565554 799999999999887665
Q ss_pred ccCCCC--------------------------------------eeEEEEecCCCEEEEEECC----------------C
Q 005123 225 SAHKES--------------------------------------VRDLSFCRTDLKFCSCSDD----------------T 250 (713)
Q Consensus 225 ~~~~~~--------------------------------------V~~l~fs~dg~~Las~s~D----------------g 250 (713)
...... ...+++.++...++.++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 432110 0235566666677666532 3
Q ss_pred eEEEEEcCCCeeEEEEccCC---------CceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceEEEEccCC------
Q 005123 251 TVKVWDFARCQEERSLTGHG---------WDVKSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK------ 312 (713)
Q Consensus 251 ~I~iwDl~~~~~~~~l~~h~---------~~V~sl~~spdg~---~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~------ 312 (713)
.|..+|.++++.+..+.... ....-+....+++ .+++++.+|.|+++|.++++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 69999999999887765321 0111122223563 57788899999999999999887664221
Q ss_pred -------CCe--------------------------EEEEEcCCCCEEEEEE----------------------------
Q 005123 313 -------NMV--------------------------LCVKWNQNGNWVLTAS---------------------------- 331 (713)
Q Consensus 313 -------~~I--------------------------~si~fspdg~~Latgs---------------------------- 331 (713)
..+ ..++|+++..+|++.+
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 011 2357888777777654
Q ss_pred ---------CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeE
Q 005123 332 ---------KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (713)
Q Consensus 332 ---------~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~ 402 (713)
.++.|..||+++++.+.++.... .+.+..+.. .+.++++++.||.|++||.++++.+.++.........
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 510 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence 34789999999999888776332 222222222 3566777899999999999988877666544322222
Q ss_pred EEEEcCCCc
Q 005123 403 DLAWHPIGY 411 (713)
Q Consensus 403 ~l~~spdg~ 411 (713)
-+.+..++.
T Consensus 511 p~~~~~~G~ 519 (571)
T 2ad6_A 511 PMTYSFKGK 519 (571)
T ss_dssp CEEEEETTE
T ss_pred eEEEEECCE
Confidence 233445553
No 248
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.02 E-value=5.6e-08 Score=111.47 Aligned_cols=194 Identities=9% Similarity=0.082 Sum_probs=129.6
Q ss_pred CCEEEEEEC-CCcEEEEeC-CCCceEEEEeccCCC-----------EEEEEEccCCCE----EEEEeCCCcEEEEEcCCC
Q 005123 156 GRRLITGSQ-SGEFTLWNG-QSFNFEMILQAHDHA-----------IRSMVWSHNDNW----MVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 156 g~~Latgs~-dg~V~Iwd~-~t~~~~~~l~~h~~~-----------V~sl~~spdg~~----L~sgs~DG~I~vwdl~~~ 218 (713)
+..|++++. ++.|+-+|. .+++.+-++...... ...+++++.+.. |++++.|+.|..+|.+++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 889999999 899887766543211 123455433444 888889999999999999
Q ss_pred ceeeeeccCC----CCeeE-EEEecCCCEEEEEE------CCCeEEEEEcCCCeeEEEEccCCCc---------------
Q 005123 219 NVKANKSAHK----ESVRD-LSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHGWD--------------- 272 (713)
Q Consensus 219 ~~~~~~~~~~----~~V~~-l~fs~dg~~Las~s------~Dg~I~iwDl~~~~~~~~l~~h~~~--------------- 272 (713)
+.+....... ..+.+ -.+. ++ .+++++ .++.|+.+|.++++.+-.+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 9876654322 12221 1121 44 455544 3799999999999988776532211
Q ss_pred ----------------------e-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEccCCC
Q 005123 273 ----------------------V-KSVDWHPTKSLLVSGGKD----------------SLVKLWDAKSGRELCSFHGHKN 313 (713)
Q Consensus 273 ----------------------V-~sl~~spdg~~L~sgs~D----------------g~I~IwDl~t~~~~~~~~~h~~ 313 (713)
+ ..+++.++..+|+.++.+ +.|..+|.++++.+..+.....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 0 135666777788887765 3799999999999887754221
Q ss_pred ---------CeEEEEEc-CCC---CEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 314 ---------MVLCVKWN-QNG---NWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 314 ---------~I~si~fs-pdg---~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
...-+... .+| +.|+.++.+|.|+++|.++++.+..+.
T Consensus 300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 11112222 467 467778899999999999999887664
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.02 E-value=9e-09 Score=115.86 Aligned_cols=229 Identities=13% Similarity=0.054 Sum_probs=162.1
Q ss_pred CCCEEEEEEC-CCcEEEEeCCCCceEEEEecc-CCCEEEEEE-c-cCCCEEEEEe------------------CCCcEEE
Q 005123 155 TGRRLITGSQ-SGEFTLWNGQSFNFEMILQAH-DHAIRSMVW-S-HNDNWMVSGD------------------DGGAIKY 212 (713)
Q Consensus 155 dg~~Latgs~-dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~-s-pdg~~L~sgs------------------~DG~I~v 212 (713)
||++|++... ++.|.+.|+.+.++...+..- ...+..+++ + |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888888776 456999999999988866543 356889998 5 8999999885 2457999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC--------------------------------------eEEE
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--------------------------------------TVKV 254 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg--------------------------------------~I~i 254 (713)
+|.++.++...+.... .-..++++++++++++++.+. .|.|
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999998887775433 567788999999998888553 3666
Q ss_pred EEcCC--Cee-EEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------eEEEEccCCCCeEEE
Q 005123 255 WDFAR--CQE-ERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGR------------ELCSFHGHKNMVLCV 318 (713)
Q Consensus 255 wDl~~--~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t~~------------~~~~~~~h~~~I~si 318 (713)
.|.++ ++. +..+. -.....++.++|||+++++++ .+.+|.++|+++.+ .+..+. -......+
T Consensus 259 ID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 66665 333 33333 223566899999999887776 47789999998653 222222 34567889
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCC----------CeeEEEeecCCCCe-----EEEEEeCCCCCEEEEEEC---CCc--
Q 005123 319 KWNQNGNWVLTASKDQIIKLYDIRA----------MKELESFRGHRKDV-----TALAWHPFHEEYFVSGSL---DGS-- 378 (713)
Q Consensus 319 ~fspdg~~Latgs~Dg~I~IwDl~t----------~~~l~~~~~h~~~V-----~sl~fsp~~~~~lasgs~---DG~-- 378 (713)
+|+++|...++...|+.|.+||+.+ .+.+.++..|-..- ..+.+++ ++++|+++.. |+.
T Consensus 337 aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEESCCTTSSCC
T ss_pred EECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcCCCCcccccc
Confidence 9999994444666899999999976 55677776654321 1223467 6788877754 332
Q ss_pred --------EEEEEcCCC
Q 005123 379 --------IFHWLVGHE 387 (713)
Q Consensus 379 --------I~Iwd~~~~ 387 (713)
-.++|+..+
T Consensus 416 ~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGD 432 (595)
T ss_dssp CCSSCCEEEEEEECSSS
T ss_pred CCCCCCCcceEEEcCCC
Confidence 178888443
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.01 E-value=7.5e-08 Score=97.80 Aligned_cols=182 Identities=8% Similarity=0.069 Sum_probs=131.9
Q ss_pred CceEEEEEccCCCEEEEEECCC--cEEEEeCCCCceEEEEeccCCC-EEEEEEccCCCEEEE-EeCCCcEEEEEcCCCce
Q 005123 145 CSINRVLWTPTGRRLITGSQSG--EFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVS-GDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg--~V~Iwd~~t~~~~~~l~~h~~~-V~sl~~spdg~~L~s-gs~DG~I~vwdl~~~~~ 220 (713)
.-...+.|+ ++.++++.+.+| .|+++|+++++.+..+...... -..+++ +++.|+. .-.++.+.+||.++.+.
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcE
Confidence 345788998 666666666665 8999999999999888754322 123444 4555554 44689999999999999
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-----CceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-----~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
+.++.... ....++.|+..|+.+..+++|.++|..+.+.+..+.... ..++.+.|. ++++.+..-.+..|.
T Consensus 120 ~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 120 VRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp EEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEE
Confidence 88876533 223344578888877778899999999988887765421 345678887 676555555688999
Q ss_pred EEECCCCceEEEEccC------------CCCeEEEEEcCCCCEEEEEECC
Q 005123 296 LWDAKSGRELCSFHGH------------KNMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h------------~~~I~si~fspdg~~Latgs~D 333 (713)
+.|.++++.+..+... ....+.|+|+++++.|++.+..
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 9999999998887532 2356899999988888877653
No 251
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=99.00 E-value=3.2e-08 Score=117.08 Aligned_cols=191 Identities=10% Similarity=0.071 Sum_probs=118.5
Q ss_pred CEEEEEEc-cCCCEEEEEe-CCC----cEEEEEcCCC-ceeeeeccCCCCeeEEEEecCCCEEEEEECC-----CeEEEE
Q 005123 188 AIRSMVWS-HNDNWMVSGD-DGG----AIKYWQNNMN-NVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVW 255 (713)
Q Consensus 188 ~V~sl~~s-pdg~~L~sgs-~DG----~I~vwdl~~~-~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iw 255 (713)
.+...+|| |||++|+.+. .+| .|+++|+.++ +.+.. .......+++|++|++.|+....| ..|+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 67889999 9999888543 333 4999999988 63211 111224578999999888877665 368888
Q ss_pred EcCCCee--EEEEc-cCCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc-eE--EEE-ccCCCCeEEEEEcCCCC
Q 005123 256 DFARCQE--ERSLT-GHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGR-EL--CSF-HGHKNMVLCVKWNQNGN 325 (713)
Q Consensus 256 Dl~~~~~--~~~l~-~h~~~V~sl~~spdg~~L~sgs~---Dg~I~IwDl~t~~-~~--~~~-~~h~~~I~si~fspdg~ 325 (713)
++.+... ...+. .......++.|++|+++|+..+. ...|+++|+.++. .. ..+ ........++.|+. ++
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~ 331 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TS 331 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TT
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CC
Confidence 9877542 22332 22345678899999998887663 3468889998752 22 333 23344556666554 55
Q ss_pred EEEEEE-CC----CeEEEEECCCCeeEEE-eecCCC--CeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 326 WVLTAS-KD----QIIKLYDIRAMKELES-FRGHRK--DVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 326 ~Latgs-~D----g~I~IwDl~t~~~l~~-~~~h~~--~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
.|+..+ .+ ..|.++|+.+...... +..+.. .+..+.+. ++.++++...++..+||-
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 555443 33 3677888765322222 223333 34555554 566777888888655443
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.99 E-value=6.9e-08 Score=110.44 Aligned_cols=271 Identities=10% Similarity=0.086 Sum_probs=169.9
Q ss_pred CCEEEEEEC-CCcEEEEeC-CCCceEEEEeccCC-C----------EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 156 GRRLITGSQ-SGEFTLWNG-QSFNFEMILQAHDH-A----------IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 156 g~~Latgs~-dg~V~Iwd~-~t~~~~~~l~~h~~-~----------V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
+..|++++. ++.|+-+|. .+++.+-++..... . ...+++ ++..|++++.|+.|..+|..+++.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456777777 889999999 89988776653221 0 012233 36688888899999999999998877
Q ss_pred eeccCC----CCeeE-EEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEEEccCCCc-------------------
Q 005123 223 NKSAHK----ESVRD-LSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWD------------------- 272 (713)
Q Consensus 223 ~~~~~~----~~V~~-l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~l~~h~~~------------------- 272 (713)
...... ..+.+ ..+. ++ .+++++. ++.|+.+|.++++.+.++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 654322 02221 1121 34 4555554 789999999999988776532111
Q ss_pred -------------------eEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEccC--CC--
Q 005123 273 -------------------VKSVDWHPTKSLLVSGGKD----------------SLVKLWDAKSGRELCSFHGH--KN-- 313 (713)
Q Consensus 273 -------------------V~sl~~spdg~~L~sgs~D----------------g~I~IwDl~t~~~~~~~~~h--~~-- 313 (713)
...++++++...|+.++.+ +.|..+|.++++.+..+... ..
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 0235666766677776632 25999999999998877532 11
Q ss_pred -----CeEEEEEcCCCC---EEEEEECCCeEEEEECCCCeeEEEeecCC-------------CCe---------------
Q 005123 314 -----MVLCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHR-------------KDV--------------- 357 (713)
Q Consensus 314 -----~I~si~fspdg~---~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-------------~~V--------------- 357 (713)
...-+....+|+ .|++++.+|.|+++|.++++.+..+.... ..|
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 377 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN 377 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceE
Confidence 111122223674 57788899999999999999887665321 111
Q ss_pred -----------EEEEEeCCCCCEEEEEE-------------------------------------CCCcEEEEEcCCCCc
Q 005123 358 -----------TALAWHPFHEEYFVSGS-------------------------------------LDGSIFHWLVGHETP 389 (713)
Q Consensus 358 -----------~sl~fsp~~~~~lasgs-------------------------------------~DG~I~Iwd~~~~~~ 389 (713)
..++++++ ..+|++.+ .+|.|..||..+++.
T Consensus 378 ~~P~~~Gg~~w~~~a~dp~-~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~ 456 (571)
T 2ad6_A 378 ICPSAMGFHNQGVDSYDPE-SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA 456 (571)
T ss_dssp ESSCTTCSSCSCBCEEETT-TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred ECCCCccccCCCCceECCC-CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence 23567773 44444432 357899999988776
Q ss_pred eEEEecccCCCeEEEE-EcCCCcEE-EEeCCcEEEEecCCCCCccc
Q 005123 390 QVEIHNVHDNTVWDLA-WHPIGYLL-CSNDHTTKFWCRNRPGDTAR 433 (713)
Q Consensus 390 ~~~~~~~h~~~V~~l~-~spdg~~l-aS~Dg~v~iWd~~~~~~~~~ 433 (713)
..+.... ..+.+.. ...++.++ ++.|+.|++||.+..+...+
T Consensus 457 ~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 457 KWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp EEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 5554332 2222222 22345444 44899999999866554443
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.99 E-value=4.4e-08 Score=99.52 Aligned_cols=187 Identities=14% Similarity=0.166 Sum_probs=130.9
Q ss_pred eEEEEeccCC--CEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeccCCCCee--EEEEecCCCEEEEEE-CCC
Q 005123 178 FEMILQAHDH--AIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKANKSAHKESVR--DLSFCRTDLKFCSCS-DDT 250 (713)
Q Consensus 178 ~~~~l~~h~~--~V~sl~~spdg~~L~sgs~DG--~I~vwdl~~~~~~~~~~~~~~~V~--~l~fs~dg~~Las~s-~Dg 250 (713)
.+.++ .|.. ....|.|+ ++.++.+++.+| .|+++|+++++.+..+... .... .+++ +++.|+... .++
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~--~g~~ly~ltw~~~ 107 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISD--WKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEE--ETTEEEEEESSSS
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEE--eCCEEEEEEeeCC
Confidence 34445 3433 35788998 666666777666 8999999999988877543 3333 3444 455555554 488
Q ss_pred eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC--C---CCeEEEEEcCCCC
Q 005123 251 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH--K---NMVLCVKWNQNGN 325 (713)
Q Consensus 251 ~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h--~---~~I~si~fspdg~ 325 (713)
.+.+||.++.+.+.++.... .-..++ .|++.|+.+..++.|.++|..+.+.+.++... . ..++.+.|. +|+
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 99999999999998887433 223444 45777777776788999999999988876532 1 335667886 776
Q ss_pred EEEEEECCCeEEEEECCCCeeEEEeecC------------CCCeEEEEEeCCCCCEEEEE
Q 005123 326 WVLTASKDQIIKLYDIRAMKELESFRGH------------RKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 326 ~Latgs~Dg~I~IwDl~t~~~l~~~~~h------------~~~V~sl~fsp~~~~~lasg 373 (713)
.++....+..|.+.|.++++.+..+... ....+.|+|+++.++++++|
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 5555557889999999999998877642 13468999999555555554
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.98 E-value=5.1e-08 Score=111.82 Aligned_cols=250 Identities=10% Similarity=0.007 Sum_probs=159.3
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCC----CEEE-EEEccCCCEEEEEe------CCCcEEEEEcCCCceeeeecc
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDH----AIRS-MVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~----~V~s-l~~spdg~~L~sgs------~DG~I~vwdl~~~~~~~~~~~ 226 (713)
+|++++.|+.|+.+|.++++.+-....... .+.+ ..+. ++ .|++++ .+|.|+.+|.++++++..+..
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 388888999999999999998766653220 2221 1111 34 555554 379999999999988766543
Q ss_pred CCCC-------------------------------------e-eEEEEecCCCEEEEEECC----------------CeE
Q 005123 227 HKES-------------------------------------V-RDLSFCRTDLKFCSCSDD----------------TTV 252 (713)
Q Consensus 227 ~~~~-------------------------------------V-~~l~fs~dg~~Las~s~D----------------g~I 252 (713)
.... + ..+++.++..+++.++.+ +.|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 2211 0 134566677777777665 389
Q ss_pred EEEEcCCCeeEEEEccCCCc---------eEEEEEc-CCC---CEEEEEeCCCcEEEEECCCCceEEEEccCC-------
Q 005123 253 KVWDFARCQEERSLTGHGWD---------VKSVDWH-PTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHK------- 312 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~h~~~---------V~sl~~s-pdg---~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~------- 312 (713)
..+|.++++.+-.+...... ..-+... .++ +.|+.++.+|.|+++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 99999999988776543211 1112222 456 467778999999999999999887654211
Q ss_pred ------CCe--------------------------EEEEEcCCCCEEEEEE-----------------------------
Q 005123 313 ------NMV--------------------------LCVKWNQNGNWVLTAS----------------------------- 331 (713)
Q Consensus 313 ------~~I--------------------------~si~fspdg~~Latgs----------------------------- 331 (713)
..+ ..++++|+..+|++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 001 1356677666555431
Q ss_pred ----------CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCe
Q 005123 332 ----------KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (713)
Q Consensus 332 ----------~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V 401 (713)
.++.|..||+++++.+....... .+..-.+.- .+.+++.++.||.|+.||.++++.+.+.........
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~ 518 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG 518 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence 34789999999999887775321 111111111 456777799999999999999887766654332222
Q ss_pred EEEEEcCCCc
Q 005123 402 WDLAWHPIGY 411 (713)
Q Consensus 402 ~~l~~spdg~ 411 (713)
.-+.+..+|+
T Consensus 519 ~P~~y~~~G~ 528 (599)
T 1w6s_A 519 YPMTYTHKGT 528 (599)
T ss_dssp CCEEEEETTE
T ss_pred ccEEEEeCCE
Confidence 3344555663
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.94 E-value=2.7e-07 Score=105.75 Aligned_cols=254 Identities=10% Similarity=0.053 Sum_probs=160.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCC----CEE-EEEEcc---CCC-EEEEEe------CCCcEEEEEcCCCce
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH----AIR-SMVWSH---NDN-WMVSGD------DGGAIKYWQNNMNNV 220 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~----~V~-sl~~sp---dg~-~L~sgs------~DG~I~vwdl~~~~~ 220 (713)
+..|++++.|+.|+.+|.++++.+-....... .+. +..+.. +++ .|++++ .++.|..+|.+++++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 56788899999999999999998876654321 111 111111 233 566654 378999999999987
Q ss_pred eeeeccCCCC-----------------------------------------eeEEEEecCCCEEEEEEC-----------
Q 005123 221 KANKSAHKES-----------------------------------------VRDLSFCRTDLKFCSCSD----------- 248 (713)
Q Consensus 221 ~~~~~~~~~~-----------------------------------------V~~l~fs~dg~~Las~s~----------- 248 (713)
+......... -..+++.++..++++++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 7654321100 013456666677776663
Q ss_pred ---------C----CeEEEEEcCCCeeEEEEcc--CCC-------ceEEEEEc-CCCC---EEEEEeCCCcEEEEECCCC
Q 005123 249 ---------D----TTVKVWDFARCQEERSLTG--HGW-------DVKSVDWH-PTKS---LLVSGGKDSLVKLWDAKSG 302 (713)
Q Consensus 249 ---------D----g~I~iwDl~~~~~~~~l~~--h~~-------~V~sl~~s-pdg~---~L~sgs~Dg~I~IwDl~t~ 302 (713)
| +.|..+|.++++.+-.+.. |.. ...-+... .+++ .|+.++.+|.|+++|.+++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 5899999999999887753 211 11112221 4564 7888999999999999999
Q ss_pred ceEEEEccCC--CCe-------------------------------------------EEEEEcCCCCEEEEEE------
Q 005123 303 RELCSFHGHK--NMV-------------------------------------------LCVKWNQNGNWVLTAS------ 331 (713)
Q Consensus 303 ~~~~~~~~h~--~~I-------------------------------------------~si~fspdg~~Latgs------ 331 (713)
+.+..+.... ... ..++++++..+|++..
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 9887654321 000 1245666555555432
Q ss_pred ---------------------------CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 332 ---------------------------KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 332 ---------------------------~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
.++.|..||+++++.+.++..... +..-.... .+.+++.++.||.|+.||.
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEET
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEEEEC
Confidence 257899999999998877764322 21111112 3567778999999999999
Q ss_pred CCCCceEEEecccCCCeEEEEEcCCCc
Q 005123 385 GHETPQVEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (713)
++++.+.+..........-+.|..+|+
T Consensus 515 ~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 515 KSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCCCEEEEecCCCCcccCceEEEECCE
Confidence 998877766543222222355666664
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.94 E-value=2.9e-07 Score=96.84 Aligned_cols=236 Identities=11% Similarity=0.028 Sum_probs=147.0
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec-------------------cCCCCeeEEEEecCCCEEEEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-------------------AHKESVRDLSFCRTDLKFCSCS 247 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~-------------------~~~~~V~~l~fs~dg~~Las~s 247 (713)
....+++|.+++++|+++..++.|..||..+++...... .....+.++++.+++..|+++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 345678899998888888889999999887665432211 0113578899987444566666
Q ss_pred CCCeEEEEEcCCCeeEEEEcc----CCCceEEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCceE
Q 005123 248 DDTTVKVWDFARCQEERSLTG----HGWDVKSVDWHP-TKSLLVSGGK-----------------DSLVKLWDAKSGREL 305 (713)
Q Consensus 248 ~Dg~I~iwDl~~~~~~~~l~~----h~~~V~sl~~sp-dg~~L~sgs~-----------------Dg~I~IwDl~t~~~~ 305 (713)
..+.|.++|..+++....... .......+++.+ ++++.++... ++.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 666688898765432221111 123578899999 8876665432 367899998776543
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCe--eEEEeecCCCCeEEEEEeCCCCCEEEEEEC-------
Q 005123 306 CSFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMK--ELESFRGHRKDVTALAWHPFHEEYFVSGSL------- 375 (713)
Q Consensus 306 ~~~~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~--~l~~~~~h~~~V~sl~fsp~~~~~lasgs~------- 375 (713)
.... .......|+|++++++|+++ +.++.|++||+.... ....+..... ...+++++ +++++++...
T Consensus 179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTT
T ss_pred Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCccccccc
Confidence 3222 22345679999999977666 456899999987421 1122211223 78899998 6677766654
Q ss_pred ---CCcEEEEEcCCCCceEEEeccc----CCCeEEEEEcCCCcEE-EE-eCCcEEEEecCCC
Q 005123 376 ---DGSIFHWLVGHETPQVEIHNVH----DNTVWDLAWHPIGYLL-CS-NDHTTKFWCRNRP 428 (713)
Q Consensus 376 ---DG~I~Iwd~~~~~~~~~~~~~h----~~~V~~l~~spdg~~l-aS-~Dg~v~iWd~~~~ 428 (713)
.+.|..+|.. ...+..+... ...++++++. ++.+. ++ .++.|.+++++..
T Consensus 256 ~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 256 GRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp SCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC---
T ss_pred CCCccEEEEECCC--CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEecccc
Confidence 3567777753 3333333322 2356777774 45444 44 7788888887543
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.92 E-value=9.3e-07 Score=101.25 Aligned_cols=277 Identities=10% Similarity=0.017 Sum_probs=169.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCC---------EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA---------IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~---------V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
+..|++++.++.|+-+|.++++.+-++...... ...+++ .+..|++++.|+.|..+|.++++.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 445666666455999999999887776543221 012223 356788888999999999999998776543
Q ss_pred CCC----Cee-EEEEecC---CC-EEEEEE------CCCeEEEEEcCCCeeEEEEccCCCce------------------
Q 005123 227 HKE----SVR-DLSFCRT---DL-KFCSCS------DDTTVKVWDFARCQEERSLTGHGWDV------------------ 273 (713)
Q Consensus 227 ~~~----~V~-~l~fs~d---g~-~Las~s------~Dg~I~iwDl~~~~~~~~l~~h~~~V------------------ 273 (713)
... .+. .-.+..+ ++ .+++++ .++.|+.+|.++++.+-........+
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 221 111 1112212 23 555554 37899999999998876553211000
Q ss_pred -----------------------EEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceEE
Q 005123 274 -----------------------KSVDWHPTKSLLVSGGK--------------------D----SLVKLWDAKSGRELC 306 (713)
Q Consensus 274 -----------------------~sl~~spdg~~L~sgs~--------------------D----g~I~IwDl~t~~~~~ 306 (713)
..++++++..+|++++. | +.|..+|.++++.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 13456666777777663 2 579999999999988
Q ss_pred EEcc--CCC-------CeEEEEEc-CCCC---EEEEEECCCeEEEEECCCCeeEEEeecCCC--Ce--------------
Q 005123 307 SFHG--HKN-------MVLCVKWN-QNGN---WVLTASKDQIIKLYDIRAMKELESFRGHRK--DV-------------- 357 (713)
Q Consensus 307 ~~~~--h~~-------~I~si~fs-pdg~---~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~--~V-------------- 357 (713)
.+.. |.. ...-+... .+|+ .|++++.+|.|+++|.++++.+..+..... ..
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~ 385 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE 385 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence 8753 221 11112221 4674 788899999999999999998876654320 00
Q ss_pred -----------------------------EEEEEeCCCCCEEEEEE--------------------------------CC
Q 005123 358 -----------------------------TALAWHPFHEEYFVSGS--------------------------------LD 376 (713)
Q Consensus 358 -----------------------------~sl~fsp~~~~~lasgs--------------------------------~D 376 (713)
..+++++..+.+++... .+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~ 465 (582)
T 1flg_A 386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465 (582)
T ss_dssp TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred ccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCc
Confidence 12456663333333221 25
Q ss_pred CcEEEEEcCCCCceEEEecccCCCeEE-EEEcCCCcEE-EEeCCcEEEEecCCCCCcccccc
Q 005123 377 GSIFHWLVGHETPQVEIHNVHDNTVWD-LAWHPIGYLL-CSNDHTTKFWCRNRPGDTARDKF 436 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~~h~~~V~~-l~~spdg~~l-aS~Dg~v~iWd~~~~~~~~~~~~ 436 (713)
|.|..||+.+++.+.+..... .+.. .....++.++ ++.|+.++.||.+..+...+.+.
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 789999998887665544321 2221 1122345444 45899999999876665554433
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.92 E-value=2e-07 Score=94.69 Aligned_cols=179 Identities=10% Similarity=0.079 Sum_probs=129.8
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCe--eEEEEecCCCEEE-EEECCCeEEEEEcCCCeeE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--RDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEE 263 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V--~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~ 263 (713)
.....|.|+ ++.++++.+.+|.|+++|+++++.+..+ ..... ..+++ +++.|+ +.-.++.+.+||.++.+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEE
Confidence 335788887 4566667788899999999999988876 33333 33555 444444 4446889999999999999
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC-----CCeEEEEEcCCCCEEEEEECCCeEEE
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-----~~I~si~fspdg~~Latgs~Dg~I~I 338 (713)
.++.... .-..++ .|++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|++++....+..|.+
T Consensus 130 ~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 130 RTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLE 205 (268)
T ss_dssp EEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred EEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEE
Confidence 8887432 223444 457888888778999999999999888775321 245777887 7765555556889999
Q ss_pred EECCCCeeEEEeecC-------------CCCeEEEEEeCCCCCEEEEEE
Q 005123 339 YDIRAMKELESFRGH-------------RKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 339 wDl~t~~~l~~~~~h-------------~~~V~sl~fsp~~~~~lasgs 374 (713)
.|.++++.+..+... ....+.|+|+++.+++++||-
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999998877532 135689999996667777663
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.91 E-value=4.8e-06 Score=88.98 Aligned_cols=243 Identities=11% Similarity=0.007 Sum_probs=156.7
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~ 223 (713)
+..+|.+..++ .+|+.+. ...|+..++........+.. ...+..++|++.+..|+.+. ..+.|..++++.......
T Consensus 34 d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 34 DRRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp TSSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCcccccccC-ceeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 34456665553 3454444 34588888877665554443 44588999998777666554 568899999887665444
Q ss_pred eccCCCCeeEEEEecCCCEE-EEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CC-CcEEEEECC
Q 005123 224 KSAHKESVRDLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KD-SLVKLWDAK 300 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~L-as~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~D-g~I~IwDl~ 300 (713)
..........+++...+..| ++-...+.|.+.++........+.........|++++.+..|+.+. .+ +.|..++++
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d 190 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 190 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence 44334566889998755555 4445567999999876544444444456789999998666555554 34 678888887
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
.......+.......+.|+|++++..|+.+. ..+.|..+|+........+.........|++. ++.++++-...+.|
T Consensus 191 G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V 268 (349)
T 3v64_C 191 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSI 268 (349)
T ss_dssp SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeE
Confidence 5333222233345678999998776666554 56789999987543333333334556778873 46666776677788
Q ss_pred EEEEcCCCCceEE
Q 005123 380 FHWLVGHETPQVE 392 (713)
Q Consensus 380 ~Iwd~~~~~~~~~ 392 (713)
..++..++.....
T Consensus 269 ~~~~~~~G~~~~~ 281 (349)
T 3v64_C 269 NSANKFTGKNQEI 281 (349)
T ss_dssp EEEETTTCCSCEE
T ss_pred EEEEccCCCccEE
Confidence 8887545544333
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=2.6e-06 Score=100.93 Aligned_cols=273 Identities=11% Similarity=0.076 Sum_probs=176.3
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe---------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---------AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~---------~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
...|.++....+|. |.+|+.++-|..|+..+........ .....|.+++...++++ .+|+.++-|.+||
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEE
Confidence 45799999998886 6677777779999987655433211 12456999998877664 4556556688888
Q ss_pred cCCCceeeee---ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEe
Q 005123 215 NNMNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 215 l~~~~~~~~~---~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs 289 (713)
..++...... ......|.++....++.+ .+++.++-|.++|..+++...... .....|.++....+++ |.+|+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt 467 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGT 467 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEE
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEE
Confidence 7655433211 123457888888777664 456776779999987765432221 1346799999887775 55566
Q ss_pred CCCcEEEEECCCCceEEEEccC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec----CCCCeEEE
Q 005123 290 KDSLVKLWDAKSGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTAL 360 (713)
Q Consensus 290 ~Dg~I~IwDl~t~~~~~~~~~h-----~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~----h~~~V~sl 360 (713)
. +-|.+||.++++........ ...|.++....+|++. +|+.++-|..||.++.+.. .+.. ....|.++
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i 544 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQI 544 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEE
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEE
Confidence 5 56999998876654433222 4678999998888754 4555444888998766533 3321 23568888
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc---cCCCeEEEEEcCCCcEEEEeCCcEEEEecC
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~laS~Dg~v~iWd~~ 426 (713)
.... ++.+.++ +.+|.|..||..+... ...... ....|.++..+.+|.+.++.++-|..|+.+
T Consensus 545 ~~d~-~g~lWi~-T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~ 610 (781)
T 3v9f_A 545 YRSS-KGQMWLA-TGEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITS 610 (781)
T ss_dssp EECT-TSCEEEE-ETTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEETT
T ss_pred EECC-CCCEEEE-ECCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEcCCceEEEECC
Confidence 8876 5555544 4466658888765542 222211 134688999999997777655557777754
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.86 E-value=3.2e-07 Score=93.24 Aligned_cols=181 Identities=8% Similarity=0.007 Sum_probs=129.3
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCC-CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~-~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
.-...+.|+ ++.++++.+.+|.|+++|+++++.+..+ .... .-..+++. .+++.++.-.++.+.+||.++.+.+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 334678887 4555666677889999999999988887 3222 12335553 234444556789999999999999888
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-----CceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-----~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
+..... -..++ .|++.|+.+..+++|.++|.++.+.+..+.... ..++.+.|. +|++++....+..|.+.|
T Consensus 132 i~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 132 TRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID 207 (268)
T ss_dssp EECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred EeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence 765332 23444 578888888889999999999998887775422 245778887 676555555688999999
Q ss_pred CCCCceEEEEccC-------------CCCeEEEEEcCCCCEEEEEEC
Q 005123 299 AKSGRELCSFHGH-------------KNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 299 l~t~~~~~~~~~h-------------~~~I~si~fspdg~~Latgs~ 332 (713)
.++++.+..+... ....+.|+|+++++.|++.+.
T Consensus 208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999998877521 235789999997666665553
No 262
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=4.1e-06 Score=99.24 Aligned_cols=274 Identities=8% Similarity=-0.016 Sum_probs=173.8
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-------AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-------~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..|.++....++. |.+++.++-|..||..+.+...... .....|.+|....++++.+. +.+ -|.+||..+
T Consensus 163 ~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGK-LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTE-EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTT
T ss_pred cceEEEEECCCCC-EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCC
Confidence 5688888887775 5557766569999988765443211 12356999998877766554 444 588899877
Q ss_pred Cceeeeec-------cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc--------------cCCCceEEE
Q 005123 218 NNVKANKS-------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--------------GHGWDVKSV 276 (713)
Q Consensus 218 ~~~~~~~~-------~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~--------------~h~~~V~sl 276 (713)
++...... .....|.++....++. |.+++..+-|.++|..+.+...... .....|.+|
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i 318 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI 318 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE
Confidence 65443221 1245688888877665 5556665668899987654322111 124579999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc---------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 277 DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH---------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~---------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
..+.++. |.+|+.++-|..|+..+........ .....|.++....+|+ |.+|+.++-|.+||..+++..
T Consensus 319 ~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~ 396 (781)
T 3v9f_A 319 FQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI 396 (781)
T ss_dssp EECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE
T ss_pred EEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE
Confidence 9998776 6677777789999987654332211 1235689998887776 556676667999998754332
Q ss_pred EEe---ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe--cccCCCeEEEEEcCCCcEEEEeCCcEEE
Q 005123 348 ESF---RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSNDHTTKF 422 (713)
Q Consensus 348 ~~~---~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~laS~Dg~v~i 422 (713)
... ......|.++.... ++.+ ..|+.++.|.++|..++. ..... ......|.++....++.+.++..+-|.+
T Consensus 397 ~~~~~~~~~~~~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~ 473 (781)
T 3v9f_A 397 YNKENRELLSNSVLCSLKDS-EGNL-WFGTYLGNISYYNTRLKK-FQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFV 473 (781)
T ss_dssp CC-----CCCSBEEEEEECT-TSCE-EEEETTEEEEEECSSSCE-EEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEE
T ss_pred EccCCCCCCCcceEEEEECC-CCCE-EEEeccCCEEEEcCCCCc-EEEeccCCCCCCeEEEEEECCCCCEEEEECCceEE
Confidence 111 12345688888875 4554 446776778888875543 12221 1234679999999888766654477888
Q ss_pred EecCC
Q 005123 423 WCRNR 427 (713)
Q Consensus 423 Wd~~~ 427 (713)
|+.+.
T Consensus 474 ~~~~~ 478 (781)
T 3v9f_A 474 IDLAS 478 (781)
T ss_dssp EESSS
T ss_pred EeCCC
Confidence 87654
No 263
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.84 E-value=1.5e-07 Score=111.30 Aligned_cols=239 Identities=9% Similarity=0.003 Sum_probs=136.5
Q ss_pred ceEEEEEc-cCCCEEEEEEC-CC----cEEEEeCCCC-ceEE-EEeccCCCEEEEEEccCCCEEEEEeCC-----CcEEE
Q 005123 146 SINRVLWT-PTGRRLITGSQ-SG----EFTLWNGQSF-NFEM-ILQAHDHAIRSMVWSHNDNWMVSGDDG-----GAIKY 212 (713)
Q Consensus 146 ~V~~v~~s-pdg~~Latgs~-dg----~V~Iwd~~t~-~~~~-~l~~h~~~V~sl~~spdg~~L~sgs~D-----G~I~v 212 (713)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|++|++.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 68899999 99999886643 33 4999999988 6321 111 113468999999988876654 25778
Q ss_pred EEcCCCce--eeeec-cCCCCeeEEEEecCCCEEEEEEC---CCeEEEEEcCCCe-eE--EEEc-cCCCceEEEEEcCCC
Q 005123 213 WQNNMNNV--KANKS-AHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQ-EE--RSLT-GHGWDVKSVDWHPTK 282 (713)
Q Consensus 213 wdl~~~~~--~~~~~-~~~~~V~~l~fs~dg~~Las~s~---Dg~I~iwDl~~~~-~~--~~l~-~h~~~V~sl~~spdg 282 (713)
+++.++.. ...+. ........+.|++|+++|+..+. ...|+++|+.++. .. ..+. .......++.|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 88877642 12222 22345678899999999887653 3468889987652 12 3332 234455666665444
Q ss_pred CEEEEEeCC----CcEEEEECCCCceEEE-EccCCC--CeEEEEEcCCCCEEEEEECCCe--EEEEEC-------CCCee
Q 005123 283 SLLVSGGKD----SLVKLWDAKSGRELCS-FHGHKN--MVLCVKWNQNGNWVLTASKDQI--IKLYDI-------RAMKE 346 (713)
Q Consensus 283 ~~L~sgs~D----g~I~IwDl~t~~~~~~-~~~h~~--~I~si~fspdg~~Latgs~Dg~--I~IwDl-------~t~~~ 346 (713)
.+++....+ ..|.++|+.+...... +..+.. .+..+++. ++.++++...++. |+++|+ .+++.
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~ 410 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTG 410 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCcc
Confidence 444444443 2577778765322222 222332 34555554 2334455666775 566675 33331
Q ss_pred EEEeecCC-CCeEEEEE----eCCCCCEEEEEECC---CcEEEEEcCCCC
Q 005123 347 LESFRGHR-KDVTALAW----HPFHEEYFVSGSLD---GSIFHWLVGHET 388 (713)
Q Consensus 347 l~~~~~h~-~~V~sl~f----sp~~~~~lasgs~D---G~I~Iwd~~~~~ 388 (713)
+..+.... ..+..+.+ +.++..++++.+.. ..|+.+|+.++.
T Consensus 411 ~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 411 LREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 33332111 22334432 33445566665554 356777775544
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.84 E-value=1.4e-06 Score=87.74 Aligned_cols=182 Identities=10% Similarity=0.050 Sum_probs=129.1
Q ss_pred CceEEEEEccCCCEEEEEECC--CcEEEEeCCCCceEEEEeccCCC-EEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 005123 145 CSINRVLWTPTGRRLITGSQS--GEFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~d--g~V~Iwd~~t~~~~~~l~~h~~~-V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~ 221 (713)
.-...+.|+. +.++.+.+.+ ..|+++|+++++.+..+...... -..+++. ++++.++.-.++.+.+||.++.+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEE
Confidence 3466888875 4444455554 48999999999999888654322 1234443 2344445567899999999999998
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-----CceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-----~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
.++...... ..| +.++..|+.+..+++|.++|.++.+.+..+.... ..++.+.|. +++.++....+..|.+
T Consensus 99 ~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v 174 (243)
T 3mbr_X 99 ARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIAR 174 (243)
T ss_dssp EEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence 887654322 344 4577778877788999999999998887775422 356778877 5665555556789999
Q ss_pred EECCCCceEEEEccC-------------CCCeEEEEEcCCCCEEEEEEC
Q 005123 297 WDAKSGRELCSFHGH-------------KNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 297 wDl~t~~~~~~~~~h-------------~~~I~si~fspdg~~Latgs~ 332 (713)
.|.++++.+..+... ....+.|+|+++++.|++.+.
T Consensus 175 IDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 175 IDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 999999998877521 235689999998777776664
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.82 E-value=2.5e-05 Score=82.02 Aligned_cols=227 Identities=11% Similarity=0.030 Sum_probs=146.8
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC----CceeeeeccCCCCee
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNM----NNVKANKSAHKESVR 232 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~----~~~~~~~~~~~~~V~ 232 (713)
+|+.+.. ..|+..|+.+.+....+. ....+..++|+++++.|+.++ .++.|..++++. ......+........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 3444443 468999998877665554 345678999998776666555 458899999876 222222222334568
Q ss_pred EEEEecCCCEEE-EEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceEEEE-
Q 005123 233 DLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--SLVKLWDAKSGRELCSF- 308 (713)
Q Consensus 233 ~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--g~I~IwDl~t~~~~~~~- 308 (713)
.+++...+..|+ +-..++.|.++|+........+.........|++++.+..|+.+... +.|..++++. +....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEE
Confidence 899986555554 44567899999987654443444344678899999866666655543 6788888864 333333
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEe-ec--CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 309 HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESF-RG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 309 ~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~-~~--h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
...-...+.|+|++++..|+.+. ..+.|..+|++.. ....+ .. .......|++. ++.++++-...+.|..++.
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeC
Confidence 33445688999998777776655 5578999999743 23333 21 22446778874 4666777767788888887
Q ss_pred CCCCce
Q 005123 385 GHETPQ 390 (713)
Q Consensus 385 ~~~~~~ 390 (713)
.++...
T Consensus 237 ~~g~~~ 242 (316)
T 1ijq_A 237 LTGSDV 242 (316)
T ss_dssp TTCCCC
T ss_pred CCCcce
Confidence 555543
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.82 E-value=6.2e-07 Score=90.25 Aligned_cols=189 Identities=12% Similarity=0.123 Sum_probs=130.4
Q ss_pred eEEEEeccC--CCEEEEEEccCCCEEEEEeCC--CcEEEEEcCCCceeeeeccCCCC-eeEEEEecCCCEEEE-EECCCe
Q 005123 178 FEMILQAHD--HAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCS-CSDDTT 251 (713)
Q Consensus 178 ~~~~l~~h~--~~V~sl~~spdg~~L~sgs~D--G~I~vwdl~~~~~~~~~~~~~~~-V~~l~fs~dg~~Las-~s~Dg~ 251 (713)
.+.++ -|+ .....+.|+. +.++.+.+.+ ..|+++|+.+++.+..+...... -..+++. ++.|+. .-.++.
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 34444 343 4467899974 4555566665 48999999999988876543321 1334443 444444 445889
Q ss_pred EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC-----CCeEEEEEcCCCCE
Q 005123 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNW 326 (713)
Q Consensus 252 I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-----~~I~si~fspdg~~ 326 (713)
+.+||.++.+.+.++.... .-..++ .+++.|+++..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+.
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 9999999999998887433 223444 456777777778999999999999888775322 345677776 6665
Q ss_pred EEEEECCCeEEEEECCCCeeEEEeecC-------------CCCeEEEEEeCCCCCEEEEEE
Q 005123 327 VLTASKDQIIKLYDIRAMKELESFRGH-------------RKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t~~~l~~~~~h-------------~~~V~sl~fsp~~~~~lasgs 374 (713)
++....+..|.+.|.++++.+..+... ....+.|+|+++.+++++||-
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 555556889999999999998877522 135689999995555666653
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.81 E-value=1.9e-06 Score=90.11 Aligned_cols=225 Identities=8% Similarity=-0.000 Sum_probs=139.7
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG--~I~vwdl~~~~~~~ 222 (713)
.....++|+++++++++-..++.|..||..+. ....+. ....+..+++.++++++++..... .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 56789999999986666667899999998753 333333 345788999999999666554332 46667777776543
Q ss_pred eecc-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEc---------cCCCceEEEEEcCCCCEEEEEe-C
Q 005123 223 NKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLT---------GHGWDVKSVDWHPTKSLLVSGG-K 290 (713)
Q Consensus 223 ~~~~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~---------~h~~~V~sl~~spdg~~L~sgs-~ 290 (713)
.... .......+++..++..+++...++.|+++|..+++. +.... ......+.| ++++++|+++. .
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3221 122334555554444444444588999999876432 21111 111234555 67777665554 5
Q ss_pred CCcEEEEECCC-Cce--EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE--EeecCCCCeEEEEEe--
Q 005123 291 DSLVKLWDAKS-GRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--SFRGHRKDVTALAWH-- 363 (713)
Q Consensus 291 Dg~I~IwDl~t-~~~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~--~~~~h~~~V~sl~fs-- 363 (713)
.+.|.+||++. ++. ...+.. ......++++++|+++++....+.|.++|.. ++... .+.......++++|.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~ 265 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQT 265 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCS
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecc
Confidence 67899999874 321 112211 1345678999999887777778899999976 55432 333334668999998
Q ss_pred -CCCCCEEEEEECC
Q 005123 364 -PFHEEYFVSGSLD 376 (713)
Q Consensus 364 -p~~~~~lasgs~D 376 (713)
+ +++.|++++..
T Consensus 266 ~~-d~~~LyVt~~~ 278 (306)
T 2p4o_A 266 EG-DCTAIYVVTNG 278 (306)
T ss_dssp TT-TTTEEEEEECT
T ss_pred cC-CCCEEEEECCC
Confidence 6 44444444433
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.78 E-value=8.5e-06 Score=88.32 Aligned_cols=242 Identities=12% Similarity=0.014 Sum_probs=157.8
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeec
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~ 225 (713)
.+|.+..+ ..+|+.+. ...|+.+++.+......+.. ...+..++|.+.+..|+.+. ..+.|..++++.......+.
T Consensus 79 ~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCccc-cceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 34555555 33444444 45689999887666555543 45688999997766666554 56789999988776544444
Q ss_pred cCCCCeeEEEEecCCCEEE-EEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-C-CcEEEEECCCC
Q 005123 226 AHKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-D-SLVKLWDAKSG 302 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-D-g~I~IwDl~t~ 302 (713)
........|++.+.+..|+ +-...+.|.+.++........+.........|++++.+..|+.+.. + +.|..++++..
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 3444567889987555554 4445678999888755444444444567899999987666665543 3 67888888754
Q ss_pred ceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEE
Q 005123 303 RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (713)
Q Consensus 303 ~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~I 381 (713)
.............+.|+|++++..|+.+. ..+.|..+|+........+.........|++. ++.++++-...+.|..
T Consensus 236 ~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 236 GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINS 313 (386)
T ss_dssp SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEE
Confidence 44333343445678999998766666554 56789999987543333333334556788883 4667777777788888
Q ss_pred EEcCCCCceEEE
Q 005123 382 WLVGHETPQVEI 393 (713)
Q Consensus 382 wd~~~~~~~~~~ 393 (713)
++..++.....+
T Consensus 314 ~~~~~G~~~~~i 325 (386)
T 3v65_B 314 ANKFTGKNQEII 325 (386)
T ss_dssp EETTTCCSCEEE
T ss_pred EECCCCcceEEE
Confidence 885555544333
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.75 E-value=1.2e-05 Score=85.81 Aligned_cols=232 Identities=5% Similarity=-0.094 Sum_probs=146.5
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEcc
Q 005123 190 RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTG 268 (713)
Q Consensus 190 ~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~ 268 (713)
+|.+..+ ..+|+.+. ...|+..+++......... ....+..++|++.+..|+.+. ..+.|+.+++........+..
T Consensus 37 ~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 37 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp CEEESSS-CCEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred ccccccc-CceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 3444444 33444443 3557778877665544433 345588999997666666554 578899999877654444443
Q ss_pred CCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE-CC-CeEEEEECCCCe
Q 005123 269 HGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KD-QIIKLYDIRAMK 345 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L-~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs-~D-g~I~IwDl~t~~ 345 (713)
.......++++..+..| ++-...+.|.+++++.......+.........|++++.+.+|+... .+ +.|..+|++...
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 44566789998755544 5555567899999876544444444446688999998666666554 44 789999887433
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEe
Q 005123 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWC 424 (713)
Q Consensus 346 ~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd 424 (713)
....+...-.....|+|+++++.++++-+..+.|..+|++... ...+..........|++..+..+++. ..+.|..++
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEE
Confidence 2222222334578999998566666676677889999986543 33333333456778888554444454 556666665
Q ss_pred c
Q 005123 425 R 425 (713)
Q Consensus 425 ~ 425 (713)
.
T Consensus 273 ~ 273 (349)
T 3v64_C 273 K 273 (349)
T ss_dssp T
T ss_pred c
Confidence 3
No 270
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.75 E-value=3.1e-05 Score=84.28 Aligned_cols=233 Identities=10% Similarity=-0.007 Sum_probs=154.1
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCC----ceeeeeccCCCCe
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMN----NVKANKSAHKESV 231 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~----~~~~~~~~~~~~V 231 (713)
.+|+.+. ...|+..|+........+. ....+..|+|++.+..|+.++ .++.|+.++++.. .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3455544 4679999988776555444 456788999998777776665 4678888888752 2333333344567
Q ss_pred eEEEEecCCCEEE-EEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEE
Q 005123 232 RDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSF 308 (713)
Q Consensus 232 ~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--Dg~I~IwDl~t~~~~~~~ 308 (713)
..|++...+..|+ +-...+.|.+.|++.......+.........|++++.+.+|+.+.. .+.|...+++.......+
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 8899987555444 4455789999998766555555545566899999997666666553 367999998754444444
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeec--CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 309 HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 309 ~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~--h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
...-...+.|++++++..|+.+. ..+.|..+|++.......+.. ......+|++. ++.++++-...+.|..+|..
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence 44446789999998777777665 467899999875433222222 23445677773 46677777777889888866
Q ss_pred CCCceEEE
Q 005123 386 HETPQVEI 393 (713)
Q Consensus 386 ~~~~~~~~ 393 (713)
++.....+
T Consensus 320 ~G~~~~~i 327 (400)
T 3p5b_L 320 TGSDVNLL 327 (400)
T ss_dssp SCCCCEEE
T ss_pred CCCceEEE
Confidence 66544444
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.74 E-value=2.5e-05 Score=82.14 Aligned_cols=224 Identities=8% Similarity=-0.037 Sum_probs=141.1
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCC----CeeEEEEccCCCceE
Q 005123 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR----CQEERSLTGHGWDVK 274 (713)
Q Consensus 200 ~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~----~~~~~~l~~h~~~V~ 274 (713)
+|+.+. ...|+..|+++.+....+. ....+.+++|++++..|+.+. .++.|..+|+.. ......+........
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344444 3568889998876655443 345688999998766665554 468999999875 222233333334668
Q ss_pred EEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCeeEEEe-
Q 005123 275 SVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESF- 350 (713)
Q Consensus 275 sl~~spdg~~L-~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D--g~I~IwDl~t~~~l~~~- 350 (713)
.|+++..+..| ++-..++.|.++|++.......+.........+++++++.+|+.+... +.|..+++.. +....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEE
Confidence 89998755544 454567889999987544333333344568899999876666665543 6888888863 333333
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEEE-eCCcEEEEecCC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNR 427 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~ 427 (713)
...-.....|+|++++++++++-+..+.|..+|++.... ..+... .......|++..+..+++. ..+.|..++...
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCC
Confidence 223456789999985566666666778999999864332 223221 2245678888654444444 567777777543
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.74 E-value=7.2e-06 Score=85.59 Aligned_cols=216 Identities=11% Similarity=0.061 Sum_probs=134.7
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC--eEEEEEcCCCeeEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVKVWDFARCQEER 264 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg--~I~iwDl~~~~~~~ 264 (713)
.....++|+++++++++...++.|..||.+.. ....+ ........+++.++++++++..... .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 56788999999887666667899999987754 32222 2345788999999998666554432 47777877766543
Q ss_pred EEcc-CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEc---------cCCCCeEEEEEcCCCCEEEEEE-C
Q 005123 265 SLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-LCSFH---------GHKNMVLCVKWNQNGNWVLTAS-K 332 (713)
Q Consensus 265 ~l~~-h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~-~~~~~---------~h~~~I~si~fspdg~~Latgs-~ 332 (713)
.... .......++...++..+++-..++.|+++|..+++. +.... ......+.| ++++++|+++. .
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3321 222345556555554444444588999999876532 21111 111234555 77887776655 5
Q ss_pred CCeEEEEECCC-Cee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE--ecccCCCeEEEEEc
Q 005123 333 DQIIKLYDIRA-MKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI--HNVHDNTVWDLAWH 407 (713)
Q Consensus 333 Dg~I~IwDl~t-~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~--~~~h~~~V~~l~~s 407 (713)
.+.|.+||+.. ++. ...+.. ......+++++ +++++++....+.|.++|.. +. ...+ ........++++|.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~-~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RS-TTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CC-EEEEECGGGTCTTEEEEEEC
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CC-EEEEeecccccCCceEEEEe
Confidence 67899999874 321 122211 13456788888 67888877778899999864 32 2222 22223568999998
Q ss_pred ---CCC
Q 005123 408 ---PIG 410 (713)
Q Consensus 408 ---pdg 410 (713)
+++
T Consensus 264 g~~~d~ 269 (306)
T 2p4o_A 264 QTEGDC 269 (306)
T ss_dssp CSTTTT
T ss_pred cccCCC
Confidence 675
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.73 E-value=8.4e-06 Score=82.93 Aligned_cols=204 Identities=13% Similarity=0.150 Sum_probs=138.4
Q ss_pred EEEEeeCCCCCceEEEEEccCCCEEE-EEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 135 FVHTSLNKNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg~~La-tgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
+..+.+.+-.+.+..++|+++++.|+ +...++.|...|.. ++.+..+.. -......|++..++.++++.-.++.+.+
T Consensus 17 ~~~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 17 IDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp EEEEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred EeceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 34457778878899999999876555 57778899999998 777777743 2356888999888876666666788999
Q ss_pred EEcCCCce---eeeec------cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC---CCeeEEEEc-------cCCCce
Q 005123 213 WQNNMNNV---KANKS------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQEERSLT-------GHGWDV 273 (713)
Q Consensus 213 wdl~~~~~---~~~~~------~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~---~~~~~~~l~-------~h~~~V 273 (713)
+++..... +.... ..+.....|+|+++++.|+++.+.....||.+. ....+..+. .....+
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 88765442 11111 234457899999999888877776555555553 111122221 133467
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEccCC---------CCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 274 KSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 274 ~sl~~spdg-~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~---------~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
.+|++++.. ++++....+..|.++|.+ ++.+..+.-.. ..-..|+|.++|+ |++.++-+.+++|.-
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 899999954 455666667788999966 55555543221 2568899999998 555577777777654
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=3.6e-06 Score=92.68 Aligned_cols=236 Identities=9% Similarity=0.066 Sum_probs=143.8
Q ss_pred ceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC-C----cEEEEEcCCCc
Q 005123 146 SINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-G----AIKYWQNNMNN 219 (713)
Q Consensus 146 ~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-G----~I~vwdl~~~~ 219 (713)
....|+|++ ++..|+++...+.|+++|.++........ .......|+|++++++|+++... + .+.+++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 567899998 46667777666889999998766554443 45668899999999977766642 2 2333333 232
Q ss_pred ee--eeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEE-eCCCcE
Q 005123 220 VK--ANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSG-GKDSLV 294 (713)
Q Consensus 220 ~~--~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sg-s~Dg~I 294 (713)
.. ..+. ......++++++ ++.++++-..++.|..||........... ........|+|++++++|+++ ..++.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 21 1221 234567888999 66666666677899999998765532222 122457899999999955554 456789
Q ss_pred EEEECCC--Cce--EEEEccC---------------CCCeE-EEEEc--------CCCCEEEEEECCCeEEEEECCCCee
Q 005123 295 KLWDAKS--GRE--LCSFHGH---------------KNMVL-CVKWN--------QNGNWVLTASKDQIIKLYDIRAMKE 346 (713)
Q Consensus 295 ~IwDl~t--~~~--~~~~~~h---------------~~~I~-si~fs--------pdg~~Latgs~Dg~I~IwDl~t~~~ 346 (713)
..+|.+. ++. +..+.+. -..-. .+++. .+++++++-..++.|+.+|. +++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcE
Confidence 9987653 221 1222211 01122 44443 33555555556678888884 4544
Q ss_pred EEEeec----C----C---------CCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 347 LESFRG----H----R---------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 347 l~~~~~----h----~---------~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
...... . + .....|+++++++.++++-..+..|+.++++
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 332211 0 1 1467888887446666666666778777653
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.70 E-value=1.4e-05 Score=86.70 Aligned_cols=231 Identities=5% Similarity=-0.099 Sum_probs=147.9
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEE-ECCCeEEEEEcCCCeeEEEEccC
Q 005123 191 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGH 269 (713)
Q Consensus 191 sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~-s~Dg~I~iwDl~~~~~~~~l~~h 269 (713)
|.+..+ ..+|+.+. ...|+.+++.......... ....+..++|.+.+..|+.+ ...+.|+.+++........+...
T Consensus 81 C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 81 CKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp EEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred ECCccc-cceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 444333 33444443 4678888887766544443 34568899999766655555 45788999998876554444444
Q ss_pred CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC-C-CeEEEEECCCCee
Q 005123 270 GWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-D-QIIKLYDIRAMKE 346 (713)
Q Consensus 270 ~~~V~sl~~spdg~~L-~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~-D-g~I~IwDl~t~~~ 346 (713)
......|++++.+..| ++-...+.|.+++++.......+.........|++++++.+|+.+.. + +.|..+|+.....
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence 4556788898755544 44455678999998755444444444467899999987766665553 3 6888888874433
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEec
Q 005123 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCR 425 (713)
Q Consensus 347 l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~ 425 (713)
...+...-.....|+|++++++++++-+..+.|..+|++... ...+..........|++..+..+++. ..+.|..++.
T Consensus 238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 238 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS-CEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe-eEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEEC
Confidence 333333345578999998566666776677889999986433 33333333456778888555455554 5666766663
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.70 E-value=0.0001 Score=77.84 Aligned_cols=267 Identities=6% Similarity=-0.015 Sum_probs=149.7
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe----ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ----AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~----~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
....+.+|.|..++..++ ++.+|.|... ...++.-..+. .....+.+|.|.+ ++ +++++.++.|.. ..+.+
T Consensus 34 ~~~~~~~v~~~~~~~~~~-~G~~g~i~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWL-VGVNATLMET-RDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp CSSCEEEEEESSSSCEEE-EETTTEEEEE-SSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTT
T ss_pred CCCcEEEEEECCCCcEEE-EcCCCeEEEe-CCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCC
Confidence 345799999988887777 4567765333 33332222221 1244688999975 44 444455664443 23333
Q ss_pred ceeeeec---cCCCCeeEEEEecCCCEEEEEECCCeEEE-EEcCCCee-EEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 219 NVKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKV-WDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 219 ~~~~~~~---~~~~~V~~l~fs~dg~~Las~s~Dg~I~i-wDl~~~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
+.-.... .....+..|.+..++..++++ .++.|.. .| .++. ..........+.++++.+++.+++++.. +.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~ 184 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GS 184 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SS
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-Cc
Confidence 3222221 123457788877776655544 5565432 23 2222 2222334567899999998887776654 54
Q ss_pred EEE-EEC--CCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec----CCCCeEEEEEeCCC
Q 005123 294 VKL-WDA--KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTALAWHPFH 366 (713)
Q Consensus 294 I~I-wDl--~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~----h~~~V~sl~fsp~~ 366 (713)
|.. +|- .+.+.+. ......+..+.++++++++ +++.+|.|++.+.+.++....+.. ....+.++++.+ +
T Consensus 185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~ 260 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-P 260 (327)
T ss_dssp EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-S
T ss_pred EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-C
Confidence 443 442 2333331 2345678899999888755 555688888775333443333321 224588999987 5
Q ss_pred CCEEEEEECCCcEEEEEcCCCCceEEEec--ccCCCeEEEEEcCCCcEEEE-eCCcEEEEe
Q 005123 367 EEYFVSGSLDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCS-NDHTTKFWC 424 (713)
Q Consensus 367 ~~~lasgs~DG~I~Iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~laS-~Dg~v~iWd 424 (713)
+.+++++ .+|.| ++..+.+..-..+.. .....+.++.|..++.+++. .+|.|.-++
T Consensus 261 ~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 261 NEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp SCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred CEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 6665554 46776 344433433222221 12356888989777665554 888766554
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.68 E-value=4.9e-07 Score=105.17 Aligned_cols=264 Identities=11% Similarity=0.030 Sum_probs=150.4
Q ss_pred EEEEcc-CCCEEEEEECCC-----------cEEEEeCCCCceEE--EEe-ccCCCEEEEEEccCCCEEEEEeC-CCcEEE
Q 005123 149 RVLWTP-TGRRLITGSQSG-----------EFTLWNGQSFNFEM--ILQ-AHDHAIRSMVWSHNDNWMVSGDD-GGAIKY 212 (713)
Q Consensus 149 ~v~~sp-dg~~Latgs~dg-----------~V~Iwd~~t~~~~~--~l~-~h~~~V~sl~~spdg~~L~sgs~-DG~I~v 212 (713)
++++.+ ++++++.|+.+. .+.+||..+.+... .+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456666 888888887643 58899988765432 222 23333445777889999999884 468999
Q ss_pred EEcCCCceeeeeccCCCC-eeEEEEecCCCEEEEEE-CC-----CeEEEEEcCCCeeEEEE----ccCCCceEEEEEcCC
Q 005123 213 WQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCS-DD-----TTVKVWDFARCQEERSL----TGHGWDVKSVDWHPT 281 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~-V~~l~fs~dg~~Las~s-~D-----g~I~iwDl~~~~~~~~l----~~h~~~V~sl~~spd 281 (713)
||..+++-...-...... -.++++.++++.++.|+ .+ ..+.+||..+.+-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 998877543322222222 23455566889888888 34 57999999876533320 000000000112234
Q ss_pred CCEEEEEeCC---------CcEEEEECCCCceEEEEccCC---------CCeEEEEEcC-CCCEEEEEECCC--------
Q 005123 282 KSLLVSGGKD---------SLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQ-NGNWVLTASKDQ-------- 334 (713)
Q Consensus 282 g~~L~sgs~D---------g~I~IwDl~t~~~~~~~~~h~---------~~I~si~fsp-dg~~Latgs~Dg-------- 334 (713)
++.++.++.| ..+.+||..+........... ..-.++.|.. +++++++|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555444 356788888765443322111 1234455543 677788887532
Q ss_pred ---eEEEEECCCCeeEEEe--ecCCCC-eEEEEEeCCCCCEEEEEECC-----------CcEEEEEcCCCCceEEEec--
Q 005123 335 ---IIKLYDIRAMKELESF--RGHRKD-VTALAWHPFHEEYFVSGSLD-----------GSIFHWLVGHETPQVEIHN-- 395 (713)
Q Consensus 335 ---~I~IwDl~t~~~l~~~--~~h~~~-V~sl~fsp~~~~~lasgs~D-----------G~I~Iwd~~~~~~~~~~~~-- 395 (713)
.|.+||..+.+-.... ...... -.+++..+ ++++++.|+.+ ..+.+||..+.. .....
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~--W~~~~~~ 506 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT--FYKQNPN 506 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE--EEECCCC
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCc--eeecCCC
Confidence 6888888765543332 222222 23445556 68888888754 468999986543 11111
Q ss_pred -ccCCCeEEEEEcCCCcEEEE
Q 005123 396 -VHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 396 -~h~~~V~~l~~spdg~~laS 415 (713)
.......+..+.+++.+++.
T Consensus 507 ~~~R~~hs~a~ll~dg~v~v~ 527 (656)
T 1k3i_A 507 SIVRVYHSISLLLPDGRVFNG 527 (656)
T ss_dssp SSCCCTTEEEEECTTSCEEEE
T ss_pred CCccccccHhhcCCCcEEEec
Confidence 11122234456678877654
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.64 E-value=3e-05 Score=81.70 Aligned_cols=226 Identities=10% Similarity=0.006 Sum_probs=144.9
Q ss_pred CCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCcee-eeeccCCCCeeEEEEecCC
Q 005123 165 SGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVK-ANKSAHKESVRDLSFCRTD 240 (713)
Q Consensus 165 dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~-~~~~~~~~~V~~l~fs~dg 240 (713)
...|+.+|+.... ....+. ....+..++|.+.+..|+.+. .++.|..++++..... ..+...-.....+++...+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4578899988763 222222 234567899998766666554 5678999998766421 2222233457789998755
Q ss_pred CEE-EEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEEccCCCCeEE
Q 005123 241 LKF-CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 241 ~~L-as~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--Dg~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
..| ++-...+.|.++++........+.........|++++.+.+|+.+.. .+.|..++++.......+...-..-+.
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 170 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence 544 44455789999998765444444445567889999987666666653 578888888743333333333456789
Q ss_pred EEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE
Q 005123 318 VKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 318 i~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~ 393 (713)
|+|++++..|+.+. ..+.|..+|++.......+.........+++. .+.++++-...+.|..++..++.....+
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 99999777666654 56789999987433222223234556778875 4566677666788988888666544333
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.63 E-value=1.1e-05 Score=88.87 Aligned_cols=236 Identities=10% Similarity=0.082 Sum_probs=144.5
Q ss_pred CceEEEEEccC--CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC----c-EEEEEcCC
Q 005123 145 CSINRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG----A-IKYWQNNM 217 (713)
Q Consensus 145 ~~V~~v~~spd--g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG----~-I~vwdl~~ 217 (713)
.....|+|+++ +..|+++...+.|+.+|..++..... .........|+|+++++ |+++...+ . +..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 45679999984 45666665558899999987765544 33456689999999999 55555422 1 23333222
Q ss_pred Cce-eeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEE-c-cCCCceEEEEEcCCCCEEEEEe-CCC
Q 005123 218 NNV-KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSL-T-GHGWDVKSVDWHPTKSLLVSGG-KDS 292 (713)
Q Consensus 218 ~~~-~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~-~h~~~V~sl~~spdg~~L~sgs-~Dg 292 (713)
... ...+ ........+++++ ++.++++-..++.|+.+|..++.....+ . .....-..|+|++++++|+++. ..+
T Consensus 217 ~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 111 0111 1234557788998 5665556556788999998866652222 2 1222335799999999555554 567
Q ss_pred cEEEEECC--CCce--EEEEccC---------------CCCeEEEEE---------cCCCCEEEEEECCCeEEEEECCCC
Q 005123 293 LVKLWDAK--SGRE--LCSFHGH---------------KNMVLCVKW---------NQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 293 ~I~IwDl~--t~~~--~~~~~~h---------------~~~I~si~f---------spdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
.|+.+|.+ +++. ...+.+. -.....+++ ..+++++++-..++.|+++|. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998865 2321 1222211 123567888 667776666667788999985 45
Q ss_pred eeEEEeecC------------------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 345 KELESFRGH------------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 345 ~~l~~~~~h------------------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
... ++.+. -.....|++++.++.++++-..+..|+.++++
T Consensus 375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 433 33221 12367788884366666666667777777653
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.61 E-value=1.4e-05 Score=81.32 Aligned_cols=200 Identities=11% Similarity=0.147 Sum_probs=134.1
Q ss_pred EEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC
Q 005123 181 ILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~ 258 (713)
.+.+-.+.+..++|+++++.|+ +...++.|...|.. ++++..+. ........|++..++.++++.-.++.|.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445567899999999876555 57788899999988 77766653 223578899999888766666567889999886
Q ss_pred CCee---EEEEc------cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC---CCceEEEEc-------cCCCCeEEEE
Q 005123 259 RCQE---ERSLT------GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK---SGRELCSFH-------GHKNMVLCVK 319 (713)
Q Consensus 259 ~~~~---~~~l~------~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~---t~~~~~~~~-------~h~~~I~si~ 319 (713)
.... +.... ........|+|+++++.|+++.+.....||.++ ....+..+. .....+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 22221 123456899999998888887766555555553 111222221 1234578999
Q ss_pred EcCC-CCEEEEEECCCeEEEEECCCCeeEEEeecCC---------CCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 320 WNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHR---------KDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 320 fspd-g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~---------~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+++. +++++....++.|.++|.. ++.+..+.... ..--.|+|.+ +++++++ ++.+.+++|.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence 9995 5566666677889999976 55665554332 2568999999 6775555 67666666643
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.58 E-value=7.5e-05 Score=81.27 Aligned_cols=225 Identities=8% Similarity=-0.046 Sum_probs=145.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCC----eeEEEEccCCCce
Q 005123 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARC----QEERSLTGHGWDV 273 (713)
Q Consensus 199 ~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~----~~~~~l~~h~~~V 273 (713)
.+|+.+. ...|+..+++........ .....+..|+|+..+..|+.+. .++.|+.+++... .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3455444 467888888876654443 3456788999998766666554 5678999998652 2333444345678
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeeEEEe
Q 005123 274 KSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESF 350 (713)
Q Consensus 274 ~sl~~spdg-~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~--Dg~I~IwDl~t~~~l~~~ 350 (713)
..|+++..+ +++++-...+.|.+.|++.......+.........|++.+.+.+|+.... .+.|...+++.......+
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 899998744 44455556788999998865544444444556889999997667766653 368999998744333333
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEEE-eCCcEEEEecC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCS-NDHTTKFWCRN 426 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~ 426 (713)
...-.....|++++++++++++-+..+.|..+|++.... ..+... .......|++..+..+++. ..+.|..++..
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESS
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcC
Confidence 333457899999985566666666678899999865433 233222 2345667888665555554 56777777643
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.57 E-value=4e-05 Score=80.71 Aligned_cols=222 Identities=5% Similarity=-0.033 Sum_probs=140.6
Q ss_pred CCcEEEEEcCCCc-eeeeeccCCCCeeEEEEecCCCEEEEE-ECCCeEEEEEcCCCee-EEEEccCCCceEEEEEcCCCC
Q 005123 207 GGAIKYWQNNMNN-VKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 207 DG~I~vwdl~~~~-~~~~~~~~~~~V~~l~fs~dg~~Las~-s~Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~spdg~ 283 (713)
...|+.++++... ...........+..++|...+..|+.+ ..++.|..+++..... ...+.........++++..+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4678888888763 111122223456789999865555544 4567899999876532 222232334577889987444
Q ss_pred -EEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeeEEEeecCCCCeEEE
Q 005123 284 -LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESFRGHRKDVTAL 360 (713)
Q Consensus 284 -~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~--Dg~I~IwDl~t~~~l~~~~~h~~~V~sl 360 (713)
++++-...+.|.+++++.......+.........|++.+.+.+|+.+.. .+.|..++++.......+...-..-..|
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 4455556778999998754433334345566889999987666766653 5789888887432222222233456899
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCC
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~ 429 (713)
+|++++++++++-+..+.|..+|++.... ..+..........|++..++.+.+. ..+.|..++....+
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence 99986666666666778899999864333 3333333456778888766555554 66777777764433
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=2e-05 Score=86.65 Aligned_cols=235 Identities=9% Similarity=0.055 Sum_probs=141.7
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC-C----eEEEEEcCCCe
Q 005123 188 AIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T----TVKVWDFARCQ 261 (713)
Q Consensus 188 ~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-g----~I~iwDl~~~~ 261 (713)
....|+|++ ++..|+++...+.|+.+|++++.+.... ........|+|++++++|+++... + .+.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 456889997 4666777766688999999877655443 345678899999999977666642 1 34444432211
Q ss_pred e-EEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcCCCCEEEEEE-CCCeEE
Q 005123 262 E-ERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTAS-KDQIIK 337 (713)
Q Consensus 262 ~-~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fspdg~~Latgs-~Dg~I~ 337 (713)
. ...+. .......+++++ ++.++++-..++.|..||..++....... ........|+|++++++|+++. .++.|+
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1 12222 234567889999 66666666677899999998765422222 2234578899999999665554 667899
Q ss_pred EEECCC--Cee--EEEeecC---------------CCCeE-EEEEeC-------CCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 338 LYDIRA--MKE--LESFRGH---------------RKDVT-ALAWHP-------FHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 338 IwDl~t--~~~--l~~~~~h---------------~~~V~-sl~fsp-------~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
++|.+. ++. +..+.+. -..-. .++... .++.++++-...+.|+.++. ++ ..
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G-~v 373 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG-RV 373 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS-EE
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC-cE
Confidence 987653 221 1222211 01122 444432 13455555555677888873 22 22
Q ss_pred EEEecc----c-------------CCCeEEEEEcC-CCcEEEE--eCCcEEEEecC
Q 005123 391 VEIHNV----H-------------DNTVWDLAWHP-IGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 391 ~~~~~~----h-------------~~~V~~l~~sp-dg~~laS--~Dg~v~iWd~~ 426 (713)
..+... . -..-+.|++++ ++.++++ ..+.|+.++++
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 222211 0 12578999998 5766655 56777777653
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.51 E-value=8.5e-05 Score=87.70 Aligned_cols=232 Identities=10% Similarity=-0.009 Sum_probs=148.7
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCC----ceeeeeccCCCCee
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMN----NVKANKSAHKESVR 232 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~----~~~~~~~~~~~~V~ 232 (713)
+|+.+ ....|+..++...+....+. ....+..|+|...+..|+.+. ..+.|+.++++.. .....+........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 44443 34568888888766554444 456778999998666666554 4577888888753 22333333455678
Q ss_pred EEEEecCCCEEEEE-ECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEEc
Q 005123 233 DLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 233 ~l~fs~dg~~Las~-s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--Dg~I~IwDl~t~~~~~~~~ 309 (713)
.|++...+..|+.+ ...+.|.+.++........+.........|++++.+.+|+.+.. .+.|.+.+++.......+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 89998777555544 45789999998765554444445567899999997666666653 2679999987554444444
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecC--CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 310 GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
......+.|++++.+..|+.+. ....|..+|+........+... -....+|++. +++++++-...+.|...|..+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence 4456789999998766676664 4568999998754433333321 2345566664 345666666667787777655
Q ss_pred CCceEEE
Q 005123 387 ETPQVEI 393 (713)
Q Consensus 387 ~~~~~~~ 393 (713)
+.....+
T Consensus 633 G~~~~~l 639 (791)
T 3m0c_C 633 GSDVNLL 639 (791)
T ss_dssp CCCCEEE
T ss_pred CcceEEe
Confidence 5444333
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.49 E-value=4.1e-05 Score=84.29 Aligned_cols=233 Identities=12% Similarity=0.108 Sum_probs=142.7
Q ss_pred CEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC-----eEEEEEcCCC
Q 005123 188 AIRSMVWSHN--DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARC 260 (713)
Q Consensus 188 ~V~sl~~spd--g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg-----~I~iwDl~~~ 260 (713)
....|+|+++ +..|+++...+.|+.+|..++.+.... .......+|+|+++++ |+++...+ .+..++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 556666655588999999877765543 3456689999999999 55554321 2333332221
Q ss_pred ee-EEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEE-c-cCCCCeEEEEEcCCCCEEEEEE-CCCe
Q 005123 261 QE-ERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSF-H-GHKNMVLCVKWNQNGNWVLTAS-KDQI 335 (713)
Q Consensus 261 ~~-~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~-~-~h~~~I~si~fspdg~~Latgs-~Dg~ 335 (713)
.. ...+. .......+++++ ++.++++-..++.|+.+|..+++....+ . .....-..|+|++++++|+++. .++.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11 11121 234567789999 6666556556788999999877653322 2 1223345799999999666555 5678
Q ss_pred EEEEECC--CCee--EEEeecC---------------CCCeEEEEE---------eCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 336 IKLYDIR--AMKE--LESFRGH---------------RKDVTALAW---------HPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 336 I~IwDl~--t~~~--l~~~~~h---------------~~~V~sl~f---------sp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
|+.+|.. +++. ...+.+. -.....+++ .. +++++++-...+.|+.++. ++
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECC-CC
Confidence 9998865 2221 1122211 123567888 44 5667777667778888874 22
Q ss_pred CceEEEecc-----------------cCCCeEEEEEc-CCCcEEEE--eCCcEEEEecC
Q 005123 388 TPQVEIHNV-----------------HDNTVWDLAWH-PIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 388 ~~~~~~~~~-----------------h~~~V~~l~~s-pdg~~laS--~Dg~v~iWd~~ 426 (713)
.+..+... .-..-..|+++ .++.++++ ..+.|+.++++
T Consensus 375 -~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 -RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22222211 01236789999 77766665 56778877764
No 286
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.42 E-value=0.00078 Score=77.47 Aligned_cols=284 Identities=8% Similarity=0.008 Sum_probs=153.9
Q ss_pred CceEEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCcee
Q 005123 145 CSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQNNMNNVK 221 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--DG~I~vwdl~~~~~~ 221 (713)
.....|++...++.|+.+. .++.|.+.++........+...-.....|++.+.+.+|+.+.. .+.|...+++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 5688999999766666554 5688999998765544444344456778999988777776664 356766676654443
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~ 300 (713)
......-...+.|++++++..|+.+. ..+.|..+|+........+.........|++..+ .++++-..++.|...|..
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 33333445678999998777766664 4567888887653332222111112223444322 222222223334444433
Q ss_pred CCceEEEEc-----------------------------------------------------------------------
Q 005123 301 SGRELCSFH----------------------------------------------------------------------- 309 (713)
Q Consensus 301 t~~~~~~~~----------------------------------------------------------------------- 309 (713)
+++....+.
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~ 322 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 322 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE
Confidence 332111100
Q ss_pred -----------------------cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCC
Q 005123 310 -----------------------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 310 -----------------------~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~ 365 (713)
..-..+..|+|.+.+..|+.+. ..+.|+.+++........+...-.....+++...
T Consensus 323 ~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~ 402 (619)
T 3s94_A 323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV 402 (619)
T ss_dssp EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc
Confidence 0011234445544333333332 3445555555432222222222245668888765
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC-CcEEEEe-CCcEEEEecCCCCC
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSN-DHTTKFWCRNRPGD 430 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~laS~-Dg~v~iWd~~~~~~ 430 (713)
+++++++-+..+.|.+.+++.... ..+....-....+|++++. |.+..++ ...-+|+..+..+.
T Consensus 403 ~~~lY~tD~~~~~I~v~~~~G~~~-~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 403 ARNLYWTDTGTDRIEVTRLNGTMR-KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSC-EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred cCcEEEEeCCCCcEEEEeCCCCeE-EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence 677777777788999999865433 3333333457889999986 6665663 22244554444443
No 287
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.41 E-value=0.00039 Score=85.48 Aligned_cols=281 Identities=11% Similarity=0.077 Sum_probs=165.8
Q ss_pred CCceEEEEEccC------CCEEEEEEC-CCcEEEEeCCCCceEEEEecc-CCCEEEEEEcc--CCCEEEEEeCCCcEEEE
Q 005123 144 RCSINRVLWTPT------GRRLITGSQ-SGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSH--NDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 144 ~~~V~~v~~spd------g~~Latgs~-dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~sp--dg~~L~sgs~DG~I~vw 213 (713)
.+.|.|+++.+. ++++|+|.. |++|+|+++.+.+.+...... +....++.+.. ...+|.+|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 567999999864 479999996 999999999987766543322 23444444432 33578899999998766
Q ss_pred EcC--CCceeee--eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCce-EEEEEcCC--CCEEE
Q 005123 214 QNN--MNNVKAN--KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-KSVDWHPT--KSLLV 286 (713)
Q Consensus 214 dl~--~~~~~~~--~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V-~sl~~spd--g~~L~ 286 (713)
.++ ++..... .......+.-..+...+..-+.+..+....++..+..-....+. ...+ ....|+.. .+-++
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~--~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVN--LKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBS--SSCCCEEEEECCSSSTTEEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccC--hHHhceEeccCcccCCCcEE
Confidence 654 4433222 12223455555555445444444445555555433321112221 1223 23345432 23455
Q ss_pred EEeCCCcEEEEECCCCce--EEEEccCCCCeEEEEEcCCCCEEEEEECC-------------------------------
Q 005123 287 SGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKD------------------------------- 333 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~--~~~~~~h~~~I~si~fspdg~~Latgs~D------------------------------- 333 (713)
..+ ++.++|..+.+... ++++. -...+..++++++.+.++++..+
T Consensus 711 ~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1158)
T 3ei3_A 711 LAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL 788 (1158)
T ss_dssp EEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred EEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence 444 45699987754332 22332 34567888888876665543311
Q ss_pred ------------------CeEEEEECCCCeeEEEeecCC-CCeEEEE---EeCCCCCEEEEEE----------CCCcEEE
Q 005123 334 ------------------QIIKLYDIRAMKELESFRGHR-KDVTALA---WHPFHEEYFVSGS----------LDGSIFH 381 (713)
Q Consensus 334 ------------------g~I~IwDl~t~~~l~~~~~h~-~~V~sl~---fsp~~~~~lasgs----------~DG~I~I 381 (713)
+.|+++|-.+++.+..+.-.. ..+.+++ |..+...+|++|+ ..|.|++
T Consensus 789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~v 868 (1158)
T 3ei3_A 789 FSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVV 868 (1158)
T ss_dssp C----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEE
T ss_pred ccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEE
Confidence 247778877777776665332 2344444 4333357888876 3578999
Q ss_pred EEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCC
Q 005123 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPG 429 (713)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~ 429 (713)
|++...+.........++.|++|+-- +|+++++-..+|+||++....
T Consensus 869 f~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~ig~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 869 FQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASINSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEETTEEEEEEECTTS
T ss_pred EEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEcCCEEEEEECCCCc
Confidence 99964322222222346789988755 358889999999999997654
No 288
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.40 E-value=0.005 Score=70.85 Aligned_cols=285 Identities=7% Similarity=0.009 Sum_probs=160.4
Q ss_pred CceEEEEEccCCCEEEEE-ECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCcee
Q 005123 145 CSINRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQNNMNNVK 221 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latg-s~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--DG~I~vwdl~~~~~~ 221 (713)
.....|++...++.|+.+ ...+.|.+.++........+...-.....|++.+...+|+.+.. .+.|...+++.....
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 456788888776666555 45678999998765443334344456789999987777776663 467777777665544
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~ 300 (713)
... ..-...+.|+++.++..|+.+.. .+.|..+|+..... ..+.........|++.. +.++++-...+.|...|..
T Consensus 160 ~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 160 TLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp EEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence 333 34557789999998777766654 57889999865433 23333333455666653 3333333335556666644
Q ss_pred CCceEEEEccC---------------------------------------------------------------------
Q 005123 301 SGRELCSFHGH--------------------------------------------------------------------- 311 (713)
Q Consensus 301 t~~~~~~~~~h--------------------------------------------------------------------- 311 (713)
+++....+...
T Consensus 237 tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~ 316 (628)
T 4a0p_A 237 SGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQK 316 (628)
T ss_dssp TCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEET
T ss_pred CCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeecc
Confidence 43321111100
Q ss_pred ----------------------CCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeec------CCCCeEEEEE
Q 005123 312 ----------------------KNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG------HRKDVTALAW 362 (713)
Q Consensus 312 ----------------------~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~------h~~~V~sl~f 362 (713)
...+..|+|.+.++.|+.+. ..+.|+.+++........+.. ....+..|++
T Consensus 317 ~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAv 396 (628)
T 4a0p_A 317 SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSI 396 (628)
T ss_dssp TEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEE
T ss_pred ceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEe
Confidence 01122333333222222222 223344443332111111111 1235678888
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC-CCcEEEE--eCCcEEEEecCCCCCccc
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCS--NDHTTKFWCRNRPGDTAR 433 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~laS--~Dg~v~iWd~~~~~~~~~ 433 (713)
...+++++++-+..+.|.+.+++. .....+.........+|++++ ++.+..+ ....-+||..+..+...+
T Consensus 397 D~~~~nLY~td~~~~~I~v~~~~G-~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~ 469 (628)
T 4a0p_A 397 DIYSRYIYWTCEATNVINVTRLDG-RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE 469 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTS-CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE
T ss_pred eccCCeEEEEcCCCCEEEEEECCC-CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE
Confidence 875566777777788999999853 323333333456789999999 6666665 233236776666555443
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.38 E-value=9.3e-05 Score=78.16 Aligned_cols=192 Identities=9% Similarity=0.140 Sum_probs=128.8
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccC----CC---EEEEEeC---CCcEEEEEcC--CCceee
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN----DN---WMVSGDD---GGAIKYWQNN--MNNVKA 222 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spd----g~---~L~sgs~---DG~I~vwdl~--~~~~~~ 222 (713)
...+++....++-|.|||+ +++.+..+.. +.++.|..-++ ++ ++++..+ +++|.+|+++ ++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3456666677788999999 7888887754 56777766552 22 3344444 4789999774 333 33
Q ss_pred eecc------CC-CCeeEEEE--ecC-CC-EEEEEECCCeEEEEEcC-------CCeeEEEEccCCCceEEEEEcCCCCE
Q 005123 223 NKSA------HK-ESVRDLSF--CRT-DL-KFCSCSDDTTVKVWDFA-------RCQEERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 223 ~~~~------~~-~~V~~l~f--s~d-g~-~Las~s~Dg~I~iwDl~-------~~~~~~~l~~h~~~V~sl~~spdg~~ 284 (713)
.+.. .. ..+..+|+ ++. +. ++++...+|.+..|++. +.+.++++. ....+..+..++....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCe
Confidence 3311 11 56677887 553 43 68888889999999983 234566665 3467889999988889
Q ss_pred EEEEeCCCcEEEEECC-----CCceEEEEc--cCCCCeEEEEE--cCCCC-EEEEEE-CCCeEEEEECC-CCeeEEEee
Q 005123 285 LVSGGKDSLVKLWDAK-----SGRELCSFH--GHKNMVLCVKW--NQNGN-WVLTAS-KDQIIKLYDIR-AMKELESFR 351 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~-----t~~~~~~~~--~h~~~I~si~f--spdg~-~Latgs-~Dg~I~IwDl~-t~~~l~~~~ 351 (713)
|+++-++..|..||.+ +++.+..+. .....+..|++ ..+++ ||++++ .+.++.|||.. +.+.+..|.
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 9999999777777865 344554442 12346888887 44555 677666 67799999996 555555554
No 290
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.37 E-value=0.00071 Score=77.81 Aligned_cols=202 Identities=4% Similarity=-0.116 Sum_probs=126.4
Q ss_pred CCceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCce-EEEEeccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCCCce
Q 005123 144 RCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNV 220 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~-~~~l~~h~~~V~sl~~spdg~~L~sg-s~DG~I~vwdl~~~~~ 220 (713)
-..+..|+|++.+..|+.+.. ++.|..++...... ...+...-.....|++...++.|+.+ ...+.|.+.+++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 345789999997777776654 57888898876532 33344333678899999866666655 4568899999886654
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLW 297 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~Iw 297 (713)
.......-....+|++.+.+.+|+.+.. .+.|...++........+.......+.|+++++++.|+.+. ..+.|..+
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~ 198 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence 4333344556789999987777666654 35777777754433333433456788999998766666554 45679999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeeE
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~~l 347 (713)
|++.................|++..+ .|+.+ ..++.|...|..+++.+
T Consensus 199 ~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 199 NLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp SSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred cCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCccc
Confidence 98754332222212223346676544 45544 45678999998776543
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.37 E-value=0.00032 Score=82.73 Aligned_cols=223 Identities=8% Similarity=-0.045 Sum_probs=139.4
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEE-ECCCeEEEEEcCCC----eeEEEEccCCCceE
Q 005123 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARC----QEERSLTGHGWDVK 274 (713)
Q Consensus 200 ~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~-s~Dg~I~iwDl~~~----~~~~~l~~h~~~V~ 274 (713)
+|+.+ ....|+..++...+..... .....+..|+|...+..|+.+ ...+.|+.+++... .....+........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 44443 3466888888766554443 345677899999866555554 44678999998653 22334443456678
Q ss_pred EEEEcCCCCEEE-EEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC-C-CeEEEEECCCCeeEEEee
Q 005123 275 SVDWHPTKSLLV-SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-D-QIIKLYDIRAMKELESFR 351 (713)
Q Consensus 275 sl~~spdg~~L~-sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~-D-g~I~IwDl~t~~~l~~~~ 351 (713)
.|+++..++.|+ +-...+.|.+.+++.......+.........|++.+.+.+|+.+.. + +.|.+.++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 899988665554 4455778999999855444444444556899999997667766653 2 689999987544433344
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEEE-eCCcEEEEec
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCS-NDHTTKFWCR 425 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~laS-~Dg~v~iWd~ 425 (713)
..-.....|++++.+++++++-.....|..++++.... ..+... .-....+|++..+.++++. ..+.|...+.
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence 34467899999985666666656667899999855443 333322 2234567777665444443 4455555543
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00018 Score=79.93 Aligned_cols=240 Identities=13% Similarity=0.128 Sum_probs=144.7
Q ss_pred ceEEEEEcc-CCCEEEEEE-CCCcEEEEeCCCCceEEEEecc---CCCEEEEEE-------ccCCCEEEEEeCCC-----
Q 005123 146 SINRVLWTP-TGRRLITGS-QSGEFTLWNGQSFNFEMILQAH---DHAIRSMVW-------SHNDNWMVSGDDGG----- 208 (713)
Q Consensus 146 ~V~~v~~sp-dg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h---~~~V~sl~~-------spdg~~L~sgs~DG----- 208 (713)
....|+|+| +...|+++. ..+.|++.|.+++.+...+... ......|+| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 355555554 4467999999887776655432 235899999 99999777776654
Q ss_pred --cEEEEEcCC-Ccee-----eeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcC-------CCee----------
Q 005123 209 --AIKYWQNNM-NNVK-----ANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFA-------RCQE---------- 262 (713)
Q Consensus 209 --~I~vwdl~~-~~~~-----~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~-------~~~~---------- 262 (713)
.|.+++... +... ..+. .......+++++++ .++++...++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 255665333 2221 1222 12345678889855 445555567889999987 4443
Q ss_pred -EEE-Ec-cCCCceEEEEEcCCCCEEEEE-eCCCcEEEEECC--CCce--EEEEccC---C------------CCeE-EE
Q 005123 263 -ERS-LT-GHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAK--SGRE--LCSFHGH---K------------NMVL-CV 318 (713)
Q Consensus 263 -~~~-l~-~h~~~V~sl~~spdg~~L~sg-s~Dg~I~IwDl~--t~~~--~~~~~~h---~------------~~I~-si 318 (713)
... +. ........|+|++++++|+++ +....|+.+|.. ++.. ...+.+. . ..-. .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 21 223456799999999965555 456678886553 3321 1222211 1 1233 34
Q ss_pred EEc-------CCCCEEEEEECCCeEEEEECCCCeeEEEeecC------------------------CCCeEEEEEeCCCC
Q 005123 319 KWN-------QNGNWVLTASKDQIIKLYDIRAMKELESFRGH------------------------RKDVTALAWHPFHE 367 (713)
Q Consensus 319 ~fs-------pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h------------------------~~~V~sl~fsp~~~ 367 (713)
+.. .+++++++-..+..|+.+| .++. +.++-+. -.....|+++++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 444 4566666666778899998 4453 3344321 02356788887336
Q ss_pred CEEEEEECCCcEEEEEcCCCC
Q 005123 368 EYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.++++=..+..|+.++++...
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC
T ss_pred EEEEEeCCCCEEEEEECCCCc
Confidence 666666667788888876544
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.32 E-value=0.00024 Score=74.82 Aligned_cols=229 Identities=8% Similarity=0.002 Sum_probs=131.0
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe---ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~---~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
...+.+|.|++ + .+++++.++.|+.-+ +.++.-..+. .+...+..|.+..+++.++++ .+|.|..- .+.++.
T Consensus 79 ~~~~~~i~~~~-~-~~~~~g~~g~i~~S~-DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-N-EGWIVGEPPIMLHTT-DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-T-EEEEEEETTEEEEES-STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred CccEEEEEecC-C-eEEEEECCCeEEEEC-CCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCC
Confidence 44688999975 4 444455666555432 2233222222 233567888887776665554 45644321 222322
Q ss_pred e-eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc--CCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 221 K-ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF--ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 221 ~-~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl--~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
- .........+.++.+.+++.+++++...+.++-+|- .+.+.+. ......+..+.+.+++.++ +++.+|.|++.
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s 230 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFS 230 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEe
Confidence 2 222334557889999998887766654444444442 2333331 2345678899999888755 45567888777
Q ss_pred ECCCCceEEEEcc----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec---CCCCeEEEEEeCCCCCEE
Q 005123 298 DAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 298 Dl~t~~~~~~~~~----h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~---h~~~V~sl~fsp~~~~~l 370 (713)
+.+.++.-..+.. ....+.++.+.+++.+++++ .++.| ++..+.++.-..+.. ....+.++.|.. + ..+
T Consensus 231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~-~~~ 306 (327)
T 2xbg_A 231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-P-DQG 306 (327)
T ss_dssp ETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-T-TEE
T ss_pred cCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-C-Cce
Confidence 5333333222221 22358899998877766655 46766 445554544443432 345678888874 3 456
Q ss_pred EEEECCCcEEEEEc
Q 005123 371 VSGSLDGSIFHWLV 384 (713)
Q Consensus 371 asgs~DG~I~Iwd~ 384 (713)
++++.+|.|..++-
T Consensus 307 ~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 307 FILGQKGILLRYVT 320 (327)
T ss_dssp EEECSTTEEEEECC
T ss_pred EEEcCCceEEEEcC
Confidence 67778898776653
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.30 E-value=0.0025 Score=66.11 Aligned_cols=233 Identities=10% Similarity=0.105 Sum_probs=155.7
Q ss_pred EEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeccC-
Q 005123 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAH- 227 (713)
Q Consensus 150 v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-~~~~~~~~~- 227 (713)
.-.+|..+.||.=. ...+.|||+++...++.+.- ...|.-=.|..+ +.|+..+ +..|+-|+++.. ...+.+..|
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 34577777776655 67899999999988888776 457777788744 5555555 468999999753 333333332
Q ss_pred ---CCCeeEEEEecCCCEEEEEEC-------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC---CCEEEEEeCC---
Q 005123 228 ---KESVRDLSFCRTDLKFCSCSD-------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT---KSLLVSGGKD--- 291 (713)
Q Consensus 228 ---~~~V~~l~fs~dg~~Las~s~-------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd---g~~L~sgs~D--- 291 (713)
...|.....+++.++++..+- .|.+.+|..+++ ....+.+|......+.+.-+ .++|+.+...
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 346777778888888765432 367889998764 45566777655544444321 1234444332
Q ss_pred CcEEEEECCCC---c-----eEEEE----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 292 SLVKLWDAKSG---R-----ELCSF----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 292 g~I~IwDl~t~---~-----~~~~~----~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
++|+|.++... . ....+ +...+.-.++..|..-..++.-+.-|.|++||+.++.++..-+-..+.|..
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ 306 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 306 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEE
Confidence 58999998542 1 11111 122445677888888889999999999999999999999888877777766
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.+-+. ...=+++...+|.|.--.++...
T Consensus 307 ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 307 TAPHE-ATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEG-GGTEEEEEETTCEEEEEEECTTT
T ss_pred ecccC-CCCcEEEEcCCCEEEEEEECccc
Confidence 66655 33445556677777776665543
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.29 E-value=0.0017 Score=74.80 Aligned_cols=227 Identities=6% Similarity=-0.041 Sum_probs=151.3
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccCCCCeeEEE
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~ 235 (713)
+|+.+ ....|+..|+++.+....+.. .-..+..|+|++++..|+.++ .++.|..++++.......+.........|+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 45544 456799999987655443332 235688999998777777554 568899998876654444443335678899
Q ss_pred EecCCCEEEEE-ECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEEccCC
Q 005123 236 FCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 236 fs~dg~~Las~-s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
+...+..|+.+ ...+.|.+.++........+.........|+++|....|+.+.. .+.|...+++.......+ ...
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~ 165 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNV 165 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSC
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCC
Confidence 98766655544 45678999998755443334345567899999986666666553 467888888754433333 345
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 313 NMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 313 ~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
.....|+++++++.|+.+. ..+.|..+|+..... ..+.........|++.. +.++++-...+.|...|..++..
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCCCc
Confidence 6788999999877776665 567899999875433 33433444567888753 56666666678898888755543
No 296
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.24 E-value=2.2e-05 Score=91.10 Aligned_cols=236 Identities=8% Similarity=0.006 Sum_probs=132.4
Q ss_pred EEEEcc-CCCEEEEEeCCC-----------cEEEEEcCCCceeee--e-ccCCCCeeEEEEecCCCEEEEEEC-CCeEEE
Q 005123 191 SMVWSH-NDNWMVSGDDGG-----------AIKYWQNNMNNVKAN--K-SAHKESVRDLSFCRTDLKFCSCSD-DTTVKV 254 (713)
Q Consensus 191 sl~~sp-dg~~L~sgs~DG-----------~I~vwdl~~~~~~~~--~-~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~i 254 (713)
++++.+ ++++++.|+.+. .+.+||..+++.... + ..+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556666 788888887543 578899887753322 2 122334456777889999999884 568999
Q ss_pred EEcCCCeeEEEEccCC-CceEEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCceEEEE----ccCCCCeEEEEEcCC
Q 005123 255 WDFARCQEERSLTGHG-WDVKSVDWHPTKSLLVSGG-KD-----SLVKLWDAKSGRELCSF----HGHKNMVLCVKWNQN 323 (713)
Q Consensus 255 wDl~~~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs-~D-----g~I~IwDl~t~~~~~~~----~~h~~~I~si~fspd 323 (713)
||..+.+-...-.... ..-.++++.++++++++|+ .+ ..+.+||..+.+-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 9988764332211111 1223455667899999988 34 56999999876533220 000000000112234
Q ss_pred CCEEEEEECC---------CeEEEEECCCCeeEEEeecCC---------CCeEEEEEeCCCCCEEEEEECCC--------
Q 005123 324 GNWVLTASKD---------QIIKLYDIRAMKELESFRGHR---------KDVTALAWHPFHEEYFVSGSLDG-------- 377 (713)
Q Consensus 324 g~~Latgs~D---------g~I~IwDl~t~~~l~~~~~h~---------~~V~sl~fsp~~~~~lasgs~DG-------- 377 (713)
++.++.++.+ ..+.+||..+........... ..-.++.|...++++++.|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555444 357888887765433222111 12355555544678888887543
Q ss_pred ---cEEEEEcCCCCceEEEe--cccCCCe-EEEEEcCCCcEEEE--eC-----------CcEEEEecCC
Q 005123 378 ---SIFHWLVGHETPQVEIH--NVHDNTV-WDLAWHPIGYLLCS--ND-----------HTTKFWCRNR 427 (713)
Q Consensus 378 ---~I~Iwd~~~~~~~~~~~--~~h~~~V-~~l~~spdg~~laS--~D-----------g~v~iWd~~~ 427 (713)
.|.+||..+..-. .+. ....... .+++..+++.+++. .+ ..+.+||.+.
T Consensus 430 ~~~~v~~yd~~~~~W~-~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNT-VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp CEEEEECCSTTSCCEE-EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred cceEEEcCCCCCCCee-EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 5777777554422 221 1122222 34456667766654 22 4577777643
No 297
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.23 E-value=0.0023 Score=75.26 Aligned_cols=264 Identities=13% Similarity=0.152 Sum_probs=156.0
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
.+.|+||.-..+|. |..|+.+| |..||..+.+..... ......|.++....++ .|.+++.+| +.+||..+.....
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence 56799999988884 66777777 677885432211000 1123568888777554 566666665 7889987765433
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-----cCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-----~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
........|.++.. .++ .|.+++.+ .|..+|..+.+.. .+. .....|.++....++.+.+ ++.+ -|..|
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~ 170 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRY 170 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEE
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhC
Confidence 21122345776654 344 56666666 6888998765433 231 1235688888887776544 5554 58888
Q ss_pred ECCCCceEEEEcc-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 298 DAKSGRELCSFHG-----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 298 Dl~t~~~~~~~~~-----h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
|..+++....... ....|.++....++..|.+|+. +-|..+|..+.+...........|.++.... ++.+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi- 247 (758)
T 3ott_A 171 IPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDLLA- 247 (758)
T ss_dssp ETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCEEE-
T ss_pred ccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCEEE-
Confidence 9876653321111 1234888888777776666664 4588899877654322111234577887765 455544
Q ss_pred EECCCcEEEEEcCCCCceEEEec-------ccCCCeEEEEEcCCCcE-EEEeCCcEEEE
Q 005123 373 GSLDGSIFHWLVGHETPQVEIHN-------VHDNTVWDLAWHPIGYL-LCSNDHTTKFW 423 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~-laS~Dg~v~iW 423 (713)
|+.+ -|.+++..+... ..+.. .....|.+|..+.++.+ +++..| +.++
T Consensus 248 gT~~-Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~ 303 (758)
T 3ott_A 248 GTDN-GLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLS 303 (758)
T ss_dssp EETT-EEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEE
T ss_pred EeCC-ceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-cccc
Confidence 4444 577888755432 22211 12356999998888755 455545 5444
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.20 E-value=0.00022 Score=74.69 Aligned_cols=203 Identities=8% Similarity=0.051 Sum_probs=129.1
Q ss_pred CCCceEEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEecc-----C--CCEEEEEE---ccCCCEEEEEeC-----
Q 005123 143 NRCSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAH-----D--HAIRSMVW---SHNDNWMVSGDD----- 206 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h-----~--~~V~sl~~---spdg~~L~sgs~----- 206 (713)
...--.+++|+.....|+.++ .++.|..||..++......... + ..+..|.| .++++++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 334455789988766777666 7899999998765544332211 1 13679999 578777765442
Q ss_pred --------CCcEEEEEcC---CCceeeeec--c-----------CCCCeeEEEEecCCCEEEEEECC-CeEEEEEcCCCe
Q 005123 207 --------GGAIKYWQNN---MNNVKANKS--A-----------HKESVRDLSFCRTDLKFCSCSDD-TTVKVWDFARCQ 261 (713)
Q Consensus 207 --------DG~I~vwdl~---~~~~~~~~~--~-----------~~~~V~~l~fs~dg~~Las~s~D-g~I~iwDl~~~~ 261 (713)
+..|..||+. +++.+.... . ....+.++++.++|+..++++.. +.|..+|.....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6779999998 676554432 1 11248899999999999999888 888777765432
Q ss_pred eEEEE-c----cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEE-ccC---CCCeEEE-EEcCCCCEEE-
Q 005123 262 EERSL-T----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSF-HGH---KNMVLCV-KWNQNGNWVL- 328 (713)
Q Consensus 262 ~~~~l-~----~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~--~~~~-~~h---~~~I~si-~fspdg~~La- 328 (713)
....+ . ......+.|+++|++++|++...++.|..+|+++... +..- .+. -.....| ..-.+|+.|+
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 22111 1 1122367999999999999987799999999985333 2111 021 1223333 3334677744
Q ss_pred EEECCCeEEEEECCCCe
Q 005123 329 TASKDQIIKLYDIRAMK 345 (713)
Q Consensus 329 tgs~Dg~I~IwDl~t~~ 345 (713)
+...++.+.+.+.+.++
T Consensus 251 ~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 251 GARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEETTEEEEEECSSTTS
T ss_pred EcCCCCEEEEECCCCcc
Confidence 44456666666655443
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.19 E-value=0.00056 Score=72.92 Aligned_cols=222 Identities=10% Similarity=0.099 Sum_probs=124.2
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee--eee---ccCCCCeeEEEEecC---CCEEEEEEC-C-----Ce
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK--ANK---SAHKESVRDLSFCRT---DLKFCSCSD-D-----TT 251 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~--~~~---~~~~~~V~~l~fs~d---g~~Las~s~-D-----g~ 251 (713)
-..-..++|.++|++ +++..+|.|.+++ +++.. ..+ .........|+|+++ +..|+++.. + +.
T Consensus 30 l~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999985 4556679999998 33321 111 122456889999998 555555443 2 67
Q ss_pred EEEEEcCCCe-----eEE-EEc---cCCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-------
Q 005123 252 VKVWDFARCQ-----EER-SLT---GHGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSG------- 302 (713)
Q Consensus 252 I~iwDl~~~~-----~~~-~l~---~h~~~V~sl~~spdg~~L~sgs~-------------Dg~I~IwDl~t~------- 302 (713)
|..|+..... .+. .+. ........|+|.+||.++++.+. .++|.-+|.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888876431 111 122 11123468999999976665432 145666665430
Q ss_pred -----ceEEEE-ccCCCCeEEEEEcC-CCCEEEEEECCCeE------EEEECCCCe------------------eEEEee
Q 005123 303 -----RELCSF-HGHKNMVLCVKWNQ-NGNWVLTASKDQII------KLYDIRAMK------------------ELESFR 351 (713)
Q Consensus 303 -----~~~~~~-~~h~~~I~si~fsp-dg~~Latgs~Dg~I------~IwDl~t~~------------------~l~~~~ 351 (713)
.....+ .++ .....++|++ +++++++-.....+ .|.-+..+. .+..+.
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 011111 122 2356789999 66655554333321 122222221 122221
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc------eEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP------QVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~------~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
+......++|. ++.++++.-..+.|...+++.... ...++ .....+.++++.+||.+.++
T Consensus 266 -~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~ 331 (352)
T 2ism_A 266 -QGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVT 331 (352)
T ss_dssp -TCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEE
T ss_pred -CCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEE
Confidence 22345778884 567777666677788887754432 12222 22367899999999966655
No 300
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.18 E-value=6.2e-05 Score=77.87 Aligned_cols=222 Identities=14% Similarity=0.116 Sum_probs=116.3
Q ss_pred CCCEEEEEE-CC-----CcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCc--
Q 005123 155 TGRRLITGS-QS-----GEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNN-- 219 (713)
Q Consensus 155 dg~~Latgs-~d-----g~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~D-----G~I~vwdl~~~~-- 219 (713)
++.+++.|+ .+ ..+.+||..+.+....-. .......++. -++++++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 344555665 22 468899988765433211 1111122222 256777777754 468899988766
Q ss_pred -eeeeec--cCCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEe
Q 005123 220 -VKANKS--AHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 220 -~~~~~~--~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
-...-. ........+.+ +++.++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 322211 11111222222 56666666543 3688999877653322 2211222223333 567777776
Q ss_pred CC-----CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeeEEE--eecCCC
Q 005123 290 KD-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELES--FRGHRK 355 (713)
Q Consensus 290 ~D-----g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~~l~~--~~~h~~ 355 (713)
.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..|.+||+++.+-... +.....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 54 4589999987653322 1111112223333 66777777654 4699999987653322 211112
Q ss_pred CeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCCC
Q 005123 356 DVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHE 387 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~~ 387 (713)
....+.+ ++.+++.|+.+ ..|.+||.++.
T Consensus 246 ~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 246 YVGATVL---RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SCEEEEE---TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ceeEEEE---CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 2233332 56677777765 35677777554
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.17 E-value=0.00035 Score=73.75 Aligned_cols=184 Identities=10% Similarity=0.132 Sum_probs=122.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecC----CC---EEEEEEC---CCeEEEEEcC--CCeeEEE
Q 005123 198 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT----DL---KFCSCSD---DTTVKVWDFA--RCQEERS 265 (713)
Q Consensus 198 g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d----g~---~Las~s~---Dg~I~iwDl~--~~~~~~~ 265 (713)
..+++....++-+.+||+ +++.+..+.. ..++.+.+-++ ++ ++++... +++|++|++. +. .+..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceee
Confidence 456777778889999999 7777776643 56677766552 22 2333333 5799999773 33 3444
Q ss_pred Ecc------CC-CceEEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCceEEEEccCCCCeEEEEEcCCCCEE
Q 005123 266 LTG------HG-WDVKSVDW--HPT-KS-LLVSGGKDSLVKLWDAK-------SGRELCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 266 l~~------h~-~~V~sl~~--spd-g~-~L~sgs~Dg~I~IwDl~-------t~~~~~~~~~h~~~I~si~fspdg~~L 327 (713)
+.. .. ..+..+++ ++. ++ ++++..++|.+..|++. +.+.+++|.. .+.+..+...+....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 421 11 56677787 664 44 68888889999999883 3355677763 4678888898888899
Q ss_pred EEEECCCeEEEEECC-----CCeeEEEee-c-CCCCeEEEEEe--CCCCCEEEEEE-CCCcEEEEEcCC
Q 005123 328 LTASKDQIIKLYDIR-----AMKELESFR-G-HRKDVTALAWH--PFHEEYFVSGS-LDGSIFHWLVGH 386 (713)
Q Consensus 328 atgs~Dg~I~IwDl~-----t~~~l~~~~-~-h~~~V~sl~fs--p~~~~~lasgs-~DG~I~Iwd~~~ 386 (713)
+++-++.-|..||.+ +.+.+..+. + ....+..|++- .++..+|++++ .+.++.+||...
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 999999888888865 345555542 2 23478888884 32222454444 677999999963
No 302
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.17 E-value=0.0052 Score=72.24 Aligned_cols=269 Identities=11% Similarity=0.071 Sum_probs=155.7
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
...|.++....++ .|.+|+.+| +.+||..+.+...........|.++... ++ .|.+++.+ -|..+|..+++....
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 3568888877766 577777765 7899988765432111123457777643 44 56666665 577888877654432
Q ss_pred e----ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-----CCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 224 K----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-----HGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 224 ~----~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-----h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
. ......|.++....++.+.+ ++.+ -|..+|..+.+....... ....|.++....++..|.+|+. +-|
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl 213 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL 213 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence 1 11234688888777776554 4544 578888776653321111 1234888888877776666764 468
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-------cCCCCeEEEEEeCCCC
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHE 367 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-------~h~~~V~sl~fsp~~~ 367 (713)
..+|..+++...........|.++....+|.+.+ |+.+ -|.++|..+.+...... .....|.++.... ++
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g 290 (758)
T 3ott_A 214 FQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ-EH 290 (758)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT-TC
T ss_pred eEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC-CC
Confidence 8899877653322111234588888877776544 5544 58889887654322211 1234588888765 44
Q ss_pred CEEEEEECCCcEEEEEcCCCCceEEEe----cccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 368 EYFVSGSLDGSIFHWLVGHETPQVEIH----NVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~~~~~~~----~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
.+. .|+..| |.++............ ......|.++.-..++.+-++.++-+..++.
T Consensus 291 ~lW-iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~Gl~~~~~ 350 (758)
T 3ott_A 291 NIW-LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANGLIRFTD 350 (758)
T ss_dssp CEE-EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTEEEEESC
T ss_pred CEE-EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCcceeecc
Confidence 444 455556 5554432211111110 0123468899888888655443444555543
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.17 E-value=0.00096 Score=71.19 Aligned_cols=227 Identities=10% Similarity=0.045 Sum_probs=127.5
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeee---ccCCCCeeEEEEecC---CCEEEEEEC----C----C
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-VKANK---SAHKESVRDLSFCRT---DLKFCSCSD----D----T 250 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~-~~~~~---~~~~~~V~~l~fs~d---g~~Las~s~----D----g 250 (713)
-.....++|.++++ |+++..+|.|++++. +++ .+..+ .........|+|+++ +..|+++.. + +
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34577999999987 555566799999873 343 22211 122356889999997 555555443 3 5
Q ss_pred eEEEEEcCCC--e---e--E-EEEcc-CCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC------
Q 005123 251 TVKVWDFARC--Q---E--E-RSLTG-HGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSG------ 302 (713)
Q Consensus 251 ~I~iwDl~~~--~---~--~-~~l~~-h~~~V~sl~~spdg~~L~sgs~-------------Dg~I~IwDl~t~------ 302 (713)
.|..|+.... . . + ..+.. .......|+|.+|+.++++.+. .++|.-+|.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 7888887643 1 1 1 11221 1123567999999986666432 245666665421
Q ss_pred ---ceEEEEccCCCCeEEEEEcC-CCCEEEEEECCC---eEEEEECCC--------C--------eeEEEeecCCCCeEE
Q 005123 303 ---RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQ---IIKLYDIRA--------M--------KELESFRGHRKDVTA 359 (713)
Q Consensus 303 ---~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg---~I~IwDl~t--------~--------~~l~~~~~h~~~V~s 359 (713)
..+.. .++ .....++|++ +++++++-.... .|.+.+.-. + ..+..+.........
T Consensus 186 f~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 11211 222 2356799999 566555432221 243332110 0 112222112345788
Q ss_pred EEEeC------CCCCEEEEEECCCcEEEEEcCCCCceE---EEecccCCCeEEEEEcCCCcEEEEe
Q 005123 360 LAWHP------FHEEYFVSGSLDGSIFHWLVGHETPQV---EIHNVHDNTVWDLAWHPIGYLLCSN 416 (713)
Q Consensus 360 l~fsp------~~~~~lasgs~DG~I~Iwd~~~~~~~~---~~~~~h~~~V~~l~~spdg~~laS~ 416 (713)
++|.. .++.++++.-..+.|...+++...... .++......+.+|++.+||.+.++.
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 88842 256677776667788888886543222 2332224578999999999666554
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.17 E-value=0.0089 Score=62.09 Aligned_cols=254 Identities=11% Similarity=0.126 Sum_probs=161.1
Q ss_pred CcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEE
Q 005123 166 GEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~La 244 (713)
..|.|.|+.+.+...+.. .-+ +...+|..+.||.-. ..++.|+|+++...++...- .+.|.-=.|..+. .|+
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~ 121 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVA 121 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEE
T ss_pred CEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEE
Confidence 368889988865543322 222 334578888887665 68899999999988777644 4677777776544 444
Q ss_pred EEECCCeEEEEEcCC-CeeEEEEccC----CCceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCceEEEEccCC
Q 005123 245 SCSDDTTVKVWDFAR-CQEERSLTGH----GWDVKSVDWHPTKSLLVSGGK-------DSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 245 s~s~Dg~I~iwDl~~-~~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~-------Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
..+ +..|+.|+++. ....+.+..| ...|.....+++.++++..+- .|.+.+|..+. +.-..+++|.
T Consensus 122 lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha 199 (365)
T 2xzh_A 122 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 199 (365)
T ss_dssp EEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSE
T ss_pred EEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeee
Confidence 444 45899999974 3445555443 356888888999998776542 36788999874 4556677776
Q ss_pred CCeEEEEEcCC---CCEEEEEECC---CeEEEEECCCC---e------eEEEee---cCCCCeEEEEEeCCCCCEEEEEE
Q 005123 313 NMVLCVKWNQN---GNWVLTASKD---QIIKLYDIRAM---K------ELESFR---GHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 313 ~~I~si~fspd---g~~Latgs~D---g~I~IwDl~t~---~------~l~~~~---~h~~~V~sl~fsp~~~~~lasgs 374 (713)
.....+.+.-+ ..+|+.+... +++.|.++... . .+..+- .-.+--.++..+. .-.++...+
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviT 278 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT 278 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEe
Confidence 65544443221 1234444332 58999998432 1 122121 1234466788887 677888999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEc-CCCcEE-EEeCCcEEEEecCCCCC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH-PIGYLL-CSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~l-aS~Dg~v~iWd~~~~~~ 430 (713)
.-|.|++||++++..+..... ..+.|..-+-+ ..+-++ +...|.|.--.++....
T Consensus 279 K~G~ihlyDleTgt~i~~nrI-S~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 279 KYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred CCcEEEEEEcccCcEEEEecc-CCCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 999999999999886655443 34555544443 333333 44777777666655443
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.15 E-value=0.005 Score=66.28 Aligned_cols=232 Identities=10% Similarity=0.113 Sum_probs=152.6
Q ss_pred EEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeccC-
Q 005123 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAH- 227 (713)
Q Consensus 150 v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-~~~~~~~~~- 227 (713)
.-.+|..+.||.=. ...+.|||+++...++.+.-.+ .|.-=.|..+ +.|+..+ +..|+-|+++.. ...+.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecch
Confidence 44566666666554 6789999999998888887644 5666677644 5555554 478999999753 333333332
Q ss_pred ---CCCeeEEEEecCCCEEEEEEC-------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCC---CEEEEEeCC---
Q 005123 228 ---KESVRDLSFCRTDLKFCSCSD-------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK---SLLVSGGKD--- 291 (713)
Q Consensus 228 ---~~~V~~l~fs~dg~~Las~s~-------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg---~~L~sgs~D--- 291 (713)
...|.....+++.++++..+- .|.+.+|.++++ ....+.+|......+.+.-+. .+++.+...
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 356777788888888775432 467889998764 456677777666555554321 244545443
Q ss_pred CcEEEEECCCC--------ceEEEE----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 292 SLVKLWDAKSG--------RELCSF----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 292 g~I~IwDl~t~--------~~~~~~----~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
+++.|.++... +....+ +...+.-.++..|+.-..++.-+.-|.|.+||+.++.++..-+-....|..
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~ 305 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEE
Confidence 78999998543 111111 122445677888988889999999999999999999999887766666665
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
.+-+. ...=+++...+|.|.--.++..
T Consensus 306 t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 306 TAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred ecccC-CCCcEEEEccCceEEEEEEccc
Confidence 55554 3334444556666655555443
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.00084 Score=74.54 Aligned_cols=240 Identities=10% Similarity=0.071 Sum_probs=143.0
Q ss_pred CEEEEEEcc-CCCEEEEEe-CCCcEEEEEcCCCceeeeeccC---CCCeeEEEE-------ecCCCEEEEEECCC-----
Q 005123 188 AIRSMVWSH-NDNWMVSGD-DGGAIKYWQNNMNNVKANKSAH---KESVRDLSF-------CRTDLKFCSCSDDT----- 250 (713)
Q Consensus 188 ~V~sl~~sp-dg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~---~~~V~~l~f-------s~dg~~Las~s~Dg----- 250 (713)
....|+|+| ++..|+++. ..+.|++.|++++.+....... ......|+| +.++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 355555554 4467888998887776554332 235899999 99999777776654
Q ss_pred --eEEEEEcCC-CeeE-----EEEccCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCce----------
Q 005123 251 --TVKVWDFAR-CQEE-----RSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAK-------SGRE---------- 304 (713)
Q Consensus 251 --~I~iwDl~~-~~~~-----~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~-------t~~~---------- 304 (713)
.|.+++... +... ..+.. ......++++++ +.++++-..++.|..+|++ ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665433 1211 12221 234567889994 5555566677889999987 5543
Q ss_pred -EEE-E-ccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECC--CCee--EEEeecC---C------------CCeE-EE
Q 005123 305 -LCS-F-HGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIR--AMKE--LESFRGH---R------------KDVT-AL 360 (713)
Q Consensus 305 -~~~-~-~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~--t~~~--l~~~~~h---~------------~~V~-sl 360 (713)
... + .........|+|+++|++|+++ +....|+.+|.. ++.. ...+.+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 2 2233456899999999965555 456788886653 3321 1222221 0 1234 34
Q ss_pred EEeC------CCCCEEEEEECCCcEEEEEcCCCCceEEEecc-----------------------cCCCeEEEEEcCC-C
Q 005123 361 AWHP------FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-----------------------HDNTVWDLAWHPI-G 410 (713)
Q Consensus 361 ~fsp------~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~-----------------------h~~~V~~l~~spd-g 410 (713)
+... .++.++++-..+.+|+.++. ++ .+..+... .-..-..|+++++ +
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 4431 24667777777788988883 33 22222210 0123678999986 7
Q ss_pred cEEEE--eCCcEEEEecCCCCC
Q 005123 411 YLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 411 ~~laS--~Dg~v~iWd~~~~~~ 430 (713)
.+.++ ..+.||.++++....
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC-
T ss_pred EEEEEeCCCCEEEEEECCCCcc
Confidence 66655 667888887755433
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.12 E-value=5.3e-06 Score=97.09 Aligned_cols=221 Identities=11% Similarity=0.001 Sum_probs=132.2
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC----CceeeeeccCCCCeeEEEEecC
Q 005123 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNM----NNVKANKSAHKESVRDLSFCRT 239 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~----~~~~~~~~~~~~~V~~l~fs~d 239 (713)
...|++.++.+.+....+.. ...+..|+|.+++..|+.+. ..+.|+.+++.. ......+.........|++...
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 45788888877655443332 34567899998777777664 457899998875 2222222222234567888754
Q ss_pred CC-EEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEEccCCCCeE
Q 005123 240 DL-KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 240 g~-~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--Dg~I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
+. ++++-...+.|.++|+........+.........|++++.+.+|+.+.. .+.|.++++........+.......+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 44 4444455788999998765444444333456788999986665555443 26788888764332222222334567
Q ss_pred EEEEcCCCCEEEEE-ECCCeEEEEECCCCeeEEEeec--CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 317 CVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 317 si~fspdg~~Latg-s~Dg~I~IwDl~t~~~l~~~~~--h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.|+|++++..|+.+ +..+.|.++|+........+.. .......|++.. +.++++....+.|..++..++.
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCC
Confidence 89999876555544 4567899999874333222221 123344556643 4666666667788888865544
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.10 E-value=0.00073 Score=72.04 Aligned_cols=225 Identities=10% Similarity=0.094 Sum_probs=122.0
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE--Ee---ccCCCEEEEEEccC---CCEEEEEeCC------Cc
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQ---AHDHAIRSMVWSHN---DNWMVSGDDG------GA 209 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~--l~---~h~~~V~sl~~spd---g~~L~sgs~D------G~ 209 (713)
-..-..++|.+||+ |+++..+|.|++++ +++.... +. ........|+|+++ +..|+++... +.
T Consensus 30 l~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34578999999998 55556779999998 3332211 11 12456889999998 5666655432 56
Q ss_pred EEEEEcCCCce-----e-eeec---cCCCCeeEEEEecCCCEEEEEEC-------------CCeEEEEEcCCC-------
Q 005123 210 IKYWQNNMNNV-----K-ANKS---AHKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARC------- 260 (713)
Q Consensus 210 I~vwdl~~~~~-----~-~~~~---~~~~~V~~l~fs~dg~~Las~s~-------------Dg~I~iwDl~~~------- 260 (713)
|..|+...+.. + ..+. ........|+|.+|+.++++.+. .++|..+|....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 77787764321 1 1122 11123468999999976665432 145666665420
Q ss_pred -----eeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcE------EEEECCCCc------------------eEEEEcc
Q 005123 261 -----QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLV------KLWDAKSGR------------------ELCSFHG 310 (713)
Q Consensus 261 -----~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I------~IwDl~t~~------------------~~~~~~~ 310 (713)
.....+..-......++|++ +++++++-.....+ .|.-+..+. .+..+.
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~- 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP- 265 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence 01111111123467889999 56655443322221 122222221 112221
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee------EEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 311 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE------LESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 311 h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~------l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
.......++| .+|+++++....+.|...+++.... ...+..-...+..+++.+ ++.++++..
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECT-TSCEEEEEC
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECC-CCcEEEEEe
Confidence 2234567777 4666666655667788777753321 122222235688888888 556555543
No 309
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.06 E-value=0.00015 Score=74.94 Aligned_cols=220 Identities=11% Similarity=0.086 Sum_probs=113.4
Q ss_pred CEEEEEECC----CcEEEEeCCCCceEEEEecc--CCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeec
Q 005123 157 RRLITGSQS----GEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 157 ~~Latgs~d----g~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg~~L~sgs~D-----G~I~vwdl~~~~~~~~~~ 225 (713)
.+++.|+.+ ..+.+||..+.+....-... ...-..+.+ ++++++.|+.+ ..+.+||..+.+-...-.
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 345555543 45888998876543321111 111122222 66677777654 358888888765333221
Q ss_pred cC--CCCeeEEEEecCCCEEEEEECCC-----eEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeCC-----
Q 005123 226 AH--KESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKD----- 291 (713)
Q Consensus 226 ~~--~~~V~~l~fs~dg~~Las~s~Dg-----~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~D----- 291 (713)
.. ......+. -+++.++.|+.++ .+.+||+.+.+-... +........++.+ ++++++.|+.+
T Consensus 95 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 95 MRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTE
T ss_pred CCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCc
Confidence 11 11122222 2566777776543 578889877653322 1111122223333 46667766542
Q ss_pred --CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeeEEE--eecCCCCeEEE
Q 005123 292 --SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELES--FRGHRKDVTAL 360 (713)
Q Consensus 292 --g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~~l~~--~~~h~~~V~sl 360 (713)
..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-... +.........+
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence 3588999987653322 1111122222333 67777777654 3699999987543222 21111122222
Q ss_pred EEeCCCCCEEEEEECCC-----cEEEEEcCCC
Q 005123 361 AWHPFHEEYFVSGSLDG-----SIFHWLVGHE 387 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG-----~I~Iwd~~~~ 387 (713)
.+ ++.+++.|+.++ .|.+||..+.
T Consensus 249 ~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 249 AV---NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EE---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EE---CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 22 567777777653 4778887654
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.06 E-value=0.0011 Score=69.25 Aligned_cols=197 Identities=9% Similarity=0.097 Sum_probs=126.9
Q ss_pred CCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccC-------CCCeeEEEE---ecCCCEEEEEE-------
Q 005123 186 DHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAH-------KESVRDLSF---CRTDLKFCSCS------- 247 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~-------~~~V~~l~f---s~dg~~Las~s------- 247 (713)
...-.+++|......|+.++ ..+.|..||...+......... ...+..|.| .++++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 33445789987666666665 7899999998866443332211 114678999 57877766544
Q ss_pred ------CCCeEEEEEcC---CCeeEEEEcc-------------CCCceEEEEEcCCCCEEEEEeCC-CcEEEEECCCCce
Q 005123 248 ------DDTTVKVWDFA---RCQEERSLTG-------------HGWDVKSVDWHPTKSLLVSGGKD-SLVKLWDAKSGRE 304 (713)
Q Consensus 248 ------~Dg~I~iwDl~---~~~~~~~l~~-------------h~~~V~sl~~spdg~~L~sgs~D-g~I~IwDl~t~~~ 304 (713)
.+..|..||+. +++.+..... ....+..++..++|+..++++.. +.|..+|.+.. .
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence 26789999998 7766654431 11348899999999999999888 88888887643 3
Q ss_pred EEEEc------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee--EEEee--cC---CCCeEEE-EEeCCCCCE-
Q 005123 305 LCSFH------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFR--GH---RKDVTAL-AWHPFHEEY- 369 (713)
Q Consensus 305 ~~~~~------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~--l~~~~--~h---~~~V~sl-~fsp~~~~~- 369 (713)
+..+. ......+.|+++++|++|++...++.|..+|+++... +. .. +. -.....| ..-- ++++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~-~G~vl 248 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPV-GNESV 248 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEE-TTEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCccccccccc-CCEEE
Confidence 33221 1122367999999999999887799999999885332 21 11 21 1223333 2222 4555
Q ss_pred EEEEECCCcEEEEEcC
Q 005123 370 FVSGSLDGSIFHWLVG 385 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~ 385 (713)
|++.+..+.+.+.+.+
T Consensus 249 lV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 249 LVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEETTEEEEEECSS
T ss_pred EEEcCCCCEEEEECCC
Confidence 5555556655555543
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.05 E-value=0.023 Score=61.23 Aligned_cols=256 Identities=11% Similarity=0.125 Sum_probs=163.1
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEE
Q 005123 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~La 244 (713)
+..|.|.|+.+.....+..-. ..+...+|..+.|+.-. ..++.|+|+++...+....- .+.|.-=.|..+. .|+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEE
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEE
Confidence 347888998876554332211 12345677778777665 68999999999988777644 4567667776544 344
Q ss_pred EEECCCeEEEEEcCC-CeeEEEEccC----CCceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCceEEEEccCC
Q 005123 245 SCSDDTTVKVWDFAR-CQEERSLTGH----GWDVKSVDWHPTKSLLVSGGK-------DSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 245 s~s~Dg~I~iwDl~~-~~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~-------Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
..+ +..|+.|+++. ....+.+..| ...|.....+++.++++..+- .|.+.+|..+. +.-..+++|.
T Consensus 121 lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha 198 (494)
T 1bpo_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 198 (494)
T ss_dssp EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSE
T ss_pred EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeee
Confidence 443 55899999964 3445555443 356888888999998876542 46788999874 4456677777
Q ss_pred CCeEEEEEcCC---CCEEEEEECC---CeEEEEECCCC--------e-eEEEee---cCCCCeEEEEEeCCCCCEEEEEE
Q 005123 313 NMVLCVKWNQN---GNWVLTASKD---QIIKLYDIRAM--------K-ELESFR---GHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 313 ~~I~si~fspd---g~~Latgs~D---g~I~IwDl~t~--------~-~l~~~~---~h~~~V~sl~fsp~~~~~lasgs 374 (713)
.....+.+.-+ ..+|+.+... +++.|.++... + .+..+- .-.+--.++..++ .-.++...+
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviT 277 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT 277 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEe
Confidence 66655554321 1244445443 78999998532 1 111111 1234467788888 677888999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC-CcEE-EEeCCcEEEEecCCCCC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLL-CSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~l-aS~Dg~v~iWd~~~~~~ 430 (713)
.-|.|++||+.++..+..-. ...+.|...+-+.+ +-++ +...|.|.--.++....
T Consensus 278 K~G~i~lyDleTgt~i~~nr-Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 278 KYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred cCceEEEEecccceeeeeec-ccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 99999999999988665544 33455555444433 3333 34677776666655443
No 312
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.04 E-value=1.1e-05 Score=94.35 Aligned_cols=218 Identities=6% Similarity=-0.084 Sum_probs=130.1
Q ss_pred CCceEEEEEccCCCEEEEEE-CCCcEEEEeCCC----CceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCC
Q 005123 144 RCSINRVLWTPTGRRLITGS-QSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNM 217 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t----~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~ 217 (713)
...+..|+|++++..|+.+. .++.|+.+++.+ ......+.........|++...+..|+ +-...+.|.+++++.
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 34577899998777777664 457899998875 222222221122345677775444444 445568899999876
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-eCCCcE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLV 294 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~I 294 (713)
......+.........|++.+.+.+|+.+.. .+.|.++++........+.......+.|+|++++..|+.+ +..+.|
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 6554444333456788899887665555543 2678888775433322222234457789999876555444 456789
Q ss_pred EEEECCCCceEEEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 295 KLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~--~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
.++|+........+. ........|++..+ .++++....+.|..+|..+++.+..+.......+.|++
T Consensus 565 ~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp EEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred EEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 999987533222222 11233445666433 34445556678999998888887777543333444443
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.03 E-value=0.0039 Score=66.39 Aligned_cols=227 Identities=10% Similarity=0.089 Sum_probs=126.9
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc-eEEEEe---ccCCCEEEEEEccC---CCEEEEEeC----C----C
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-FEMILQ---AHDHAIRSMVWSHN---DNWMVSGDD----G----G 208 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~-~~~~l~---~h~~~V~sl~~spd---g~~L~sgs~----D----G 208 (713)
-.....|+|.+||+ |+++..+|.|+++|. +++ .+..+. ........|+|+++ +..|+++.. + +
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999997 556667799999973 444 111111 12356889999997 556655443 2 5
Q ss_pred cEEEEEcCCC--c-----ee-eeec-cCCCCeeEEEEecCCCEEEEEEC-------------CCeEEEEEcCCC------
Q 005123 209 AIKYWQNNMN--N-----VK-ANKS-AHKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARC------ 260 (713)
Q Consensus 209 ~I~vwdl~~~--~-----~~-~~~~-~~~~~V~~l~fs~dg~~Las~s~-------------Dg~I~iwDl~~~------ 260 (713)
.|..|+.... . .+ ..+. ........|+|.+|+.++++.+. .|+|..+|....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777776654 1 11 1111 11123467999999987666433 245555554321
Q ss_pred --eeEEEEccCCCceEEEEEcC-CCCEEEEEeCCC---cEEEEECCC--------C--------ceEEEEccCCCCeEEE
Q 005123 261 --QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDS---LVKLWDAKS--------G--------RELCSFHGHKNMVLCV 318 (713)
Q Consensus 261 --~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg---~I~IwDl~t--------~--------~~~~~~~~h~~~I~si 318 (713)
.......++ .....++|++ +++++++-.... .|.+..... + ..+..+.........+
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 011111222 3456899999 565444432221 243332110 0 1122221123457788
Q ss_pred EEc-------CCCCEEEEEECCCeEEEEECCCC-eeE--EEee-cCCCCeEEEEEeCCCCCEEEEEE
Q 005123 319 KWN-------QNGNWVLTASKDQIIKLYDIRAM-KEL--ESFR-GHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 319 ~fs-------pdg~~Latgs~Dg~I~IwDl~t~-~~l--~~~~-~h~~~V~sl~fsp~~~~~lasgs 374 (713)
+|. .+|+++++....+.|...++... +.. ..+. .....+..+++.+ ++.++++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEEe
Confidence 883 46777766666778988888753 222 2222 2235688999988 566666554
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.97 E-value=0.00032 Score=72.65 Aligned_cols=221 Identities=10% Similarity=0.088 Sum_probs=115.5
Q ss_pred EEEEEEC--CCcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCC----CcEEEEEcCCCceeeeeccCCC
Q 005123 158 RLITGSQ--SGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQNNMNNVKANKSAHKE 229 (713)
Q Consensus 158 ~Latgs~--dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~D----G~I~vwdl~~~~~~~~~~~~~~ 229 (713)
+++.|+. ...+.+||..+.+....-. .......++.+ ++++++.|+.+ ..+.+||..+++-...-.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4555654 3578999988765443211 11112222222 66677777754 6688899887754332211111
Q ss_pred CeeEEEEecCCCEEEEEECC------CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeC---------CC
Q 005123 230 SVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK---------DS 292 (713)
Q Consensus 230 ~V~~l~fs~dg~~Las~s~D------g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~---------Dg 292 (713)
.....+..-+++.++.|+.+ ..+.+||..+.+-... +........++.+ ++++++.|+. ..
T Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECC
T ss_pred ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccc
Confidence 11111122266677777654 4689999887653322 1111122223333 4666666653 34
Q ss_pred cEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeeEE--EeecCCCCeEEEEEe
Q 005123 293 LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELE--SFRGHRKDVTALAWH 363 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~~l~--~~~~h~~~V~sl~fs 363 (713)
.+.+||+.+.+-... +......-..+.+ ++++++.|+.+ ..|.+||+.+.+-.. .+.........+.+
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 246 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV- 246 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-
Confidence 588999987643322 1111111222223 66677776643 468999998754322 22211222333333
Q ss_pred CCCCCEEEEEECC-----CcEEEEEcCCC
Q 005123 364 PFHEEYFVSGSLD-----GSIFHWLVGHE 387 (713)
Q Consensus 364 p~~~~~lasgs~D-----G~I~Iwd~~~~ 387 (713)
++.+++.|+.+ ..|.+||..+.
T Consensus 247 --~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 247 --GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp --TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred --CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 56778888754 45777887654
No 315
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.87 E-value=0.0056 Score=63.68 Aligned_cols=208 Identities=7% Similarity=0.023 Sum_probs=117.9
Q ss_pred ccCCCEEEEEEC--CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC--------------CcEEEEEcC
Q 005123 153 TPTGRRLITGSQ--SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--------------GAIKYWQNN 216 (713)
Q Consensus 153 spdg~~Latgs~--dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--------------G~I~vwdl~ 216 (713)
+.++.+|+.... ++.|+..+.+..... .+... . +-.+++++++|+-+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCE-EEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCE-EccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 356777777653 566777776554433 33321 2 34557788888866542 357777777
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEE----CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-C
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCS----DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-D 291 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s----~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-D 291 (713)
..+...... .. +..|+.++++|+-+. .+..|+..++.... ...+..+.. ..|+++++.|+..+. .
T Consensus 97 g~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 97 GHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp SCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTT
T ss_pred CCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCC
Confidence 665433221 11 235677888888776 34456666665433 333433322 344556888887765 5
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D--g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
..|.+.++..+.....+. .... +.++|++++|+....+ ..|..-++.... ...+. ...+. .|++ .+.+
T Consensus 167 ~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt--~~~~~--~~~~-~g~~ 236 (302)
T 3s25_A 167 GQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT--EANIE--HYNV-YGSL 236 (302)
T ss_dssp CCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS--CSCEE--EEEE-ETTE
T ss_pred ceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe--CCCcc--eEEE-CCCE
Confidence 678888887665444333 2222 3456889998877654 367777776544 33332 23333 3666 4555
Q ss_pred EEEEEC--CCcEEEEEcC
Q 005123 370 FVSGSL--DGSIFHWLVG 385 (713)
Q Consensus 370 lasgs~--DG~I~Iwd~~ 385 (713)
|+-++. .+.|..-+++
T Consensus 237 Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EEEEECSSSCEEEEEETT
T ss_pred EEEEECCCCcEEEEEECC
Confidence 555433 3456555653
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.87 E-value=0.0084 Score=63.74 Aligned_cols=238 Identities=11% Similarity=0.100 Sum_probs=131.0
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee---e----ccCCCCeeEEEEecC---CCEEEEEE-C-------
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN---K----SAHKESVRDLSFCRT---DLKFCSCS-D------- 248 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~---~----~~~~~~V~~l~fs~d---g~~Las~s-~------- 248 (713)
.....|+|.++++.|+++..+|.|++++.+ +..... + .........|+|+++ +..|+++. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 456799999999845566678999999853 322111 1 112345689999986 45555443 2
Q ss_pred CCeEEEEEcCCC----eeEE-EEcc------CCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCc-
Q 005123 249 DTTVKVWDFARC----QEER-SLTG------HGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSGR- 303 (713)
Q Consensus 249 Dg~I~iwDl~~~----~~~~-~l~~------h~~~V~sl~~spdg~~L~sgs~-------------Dg~I~IwDl~t~~- 303 (713)
...|..|++... .... .+.. .......|+|.+|+.++++.+. .++|.-+|.+..-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666776432 1111 1211 1122467999999965555433 2457677765320
Q ss_pred -----------eEEEEccCCCCeEEEEEcC-CCCEEEEEEC-CCeEEEEECCCCee------------------------
Q 005123 304 -----------ELCSFHGHKNMVLCVKWNQ-NGNWVLTASK-DQIIKLYDIRAMKE------------------------ 346 (713)
Q Consensus 304 -----------~~~~~~~h~~~I~si~fsp-dg~~Latgs~-Dg~I~IwDl~t~~~------------------------ 346 (713)
....+..-......++|++ +++++++-.. ++.=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1111211123477899999 5554443221 11112222211111
Q ss_pred -------EEEeecCCCCeEEEEEeCC------CCCEEEEEECCCcEEEEEcCCCCce--EEEecccCCCeEEEEEcCCCc
Q 005123 347 -------LESFRGHRKDVTALAWHPF------HEEYFVSGSLDGSIFHWLVGHETPQ--VEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 347 -------l~~~~~h~~~V~sl~fsp~------~~~~lasgs~DG~I~Iwd~~~~~~~--~~~~~~h~~~V~~l~~spdg~ 411 (713)
+..+. +...+..++|... ++.+|++.-..+.|...+++.+... ..++......+.+|++.+||.
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 11122 2235677888642 3567777667778888887643211 112222235799999999997
Q ss_pred EEEE-eCCcEEEEecC
Q 005123 412 LLCS-NDHTTKFWCRN 426 (713)
Q Consensus 412 ~laS-~Dg~v~iWd~~ 426 (713)
+.++ .+..-+||.+.
T Consensus 336 lyv~td~~~g~I~ri~ 351 (353)
T 2g8s_A 336 LYVLTDESSGELLKVS 351 (353)
T ss_dssp EEEEECSTTEEEEEEE
T ss_pred EEEEEeCCCCEEEEEe
Confidence 6665 54677888763
No 317
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.86 E-value=0.019 Score=60.69 Aligned_cols=231 Identities=10% Similarity=0.093 Sum_probs=129.8
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--e----ccCCCCeeEEEEecC---CCEEEEE-E--CC
Q 005123 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--K----SAHKESVRDLSFCRT---DLKFCSC-S--DD 249 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~--~----~~~~~~V~~l~fs~d---g~~Las~-s--~D 249 (713)
+...-..-..|+|.+||++|++--..|.|++++..+++.... + .........|+|+++ +..|+++ + .+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 333345678999999998776665589999998665543211 1 123456789999985 3444443 2 34
Q ss_pred CeEEEEEcCCC----------eeEE-EEc-cCCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC--
Q 005123 250 TTVKVWDFARC----------QEER-SLT-GHGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSG-- 302 (713)
Q Consensus 250 g~I~iwDl~~~----------~~~~-~l~-~h~~~V~sl~~spdg~~L~sgs~-------------Dg~I~IwDl~t~-- 302 (713)
+.|.-|.+... +.+. .+. ........|.|.+|+.++++.+. .|+|.-++.+..
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 56666766541 1111 121 11223567999999987777542 244555554422
Q ss_pred ------ceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCee------------------EEEeecCCCCe
Q 005123 303 ------RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE------------------LESFRGHRKDV 357 (713)
Q Consensus 303 ------~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~------------------l~~~~~h~~~V 357 (713)
.....-.++. ....++|+++|+++++-. .|+.-.|.-+..+.. +..+..+....
T Consensus 187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 1111112333 356789999887655432 232222222222211 22222222356
Q ss_pred EEEEEeCCCCCEEEEEECCCcEEEEEcCCCC---ceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 358 TALAWHPFHEEYFVSGSLDGSIFHWLVGHET---PQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 358 ~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~---~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
..++|.. +.+++..-..+.|....++... ....++......+.+|+..+||.+.++
T Consensus 266 ~G~~~~~--g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~ 324 (347)
T 3das_A 266 SGIAYAE--GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLV 324 (347)
T ss_dssp EEEEEET--TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEE
T ss_pred cceEEEc--CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEE
Confidence 7788863 5666666666677777765432 123344444568999999999966655
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.83 E-value=0.00036 Score=72.56 Aligned_cols=222 Identities=10% Similarity=0.073 Sum_probs=114.8
Q ss_pred CCCEEEEEEC----CCcEEEEeCCCCceEEEEec--cCCCEEEEEEccCCCEEEEEeC----C-----CcEEEEEcCCCc
Q 005123 155 TGRRLITGSQ----SGEFTLWNGQSFNFEMILQA--HDHAIRSMVWSHNDNWMVSGDD----G-----GAIKYWQNNMNN 219 (713)
Q Consensus 155 dg~~Latgs~----dg~V~Iwd~~t~~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~----D-----G~I~vwdl~~~~ 219 (713)
++.+++.|+. -..+.+||..+.+....-.. .......+.+ ++++++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 4566667663 24688999887654432111 1111122222 5666777665 2 467888888765
Q ss_pred eeeeec--cCCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeC
Q 005123 220 VKANKS--AHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 220 ~~~~~~--~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
-...-. ........+.+ +++.++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 333211 11112222222 56666665532 4688999877643322 1111122233333 5677777765
Q ss_pred C-----CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeeEEE--eecCCCC
Q 005123 291 D-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELES--FRGHRKD 356 (713)
Q Consensus 291 D-----g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~~l~~--~~~h~~~ 356 (713)
+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-... +......
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 4 4589999887643221 1111122223333 67777777654 4699999987543221 2111122
Q ss_pred eEEEEEeCCCCCEEEEEECCC-----cEEEEEcCCC
Q 005123 357 VTALAWHPFHEEYFVSGSLDG-----SIFHWLVGHE 387 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG-----~I~Iwd~~~~ 387 (713)
...+.+ ++.+++.|+.++ .|.+||+.+.
T Consensus 256 ~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 256 LGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 222222 567777776543 4667777544
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.82 E-value=0.0032 Score=67.00 Aligned_cols=225 Identities=10% Similarity=0.095 Sum_probs=123.9
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-------eccCCCEEEEEEccC---CCEEEEEeC--------C
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-------QAHDHAIRSMVWSHN---DNWMVSGDD--------G 207 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-------~~h~~~V~sl~~spd---g~~L~sgs~--------D 207 (713)
..+.|+|.++|++|+++..+|.|++++.. ++....+ .........|+|+++ +.+|+++.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 57899999999845566678999999853 2221111 112346789999996 555554432 2
Q ss_pred CcEEEEEcCCC--c---eeeeecc------CCCCeeEEEEecCCCEEEEEEC-------------CCeEEEEEcCCCe--
Q 005123 208 GAIKYWQNNMN--N---VKANKSA------HKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARCQ-- 261 (713)
Q Consensus 208 G~I~vwdl~~~--~---~~~~~~~------~~~~V~~l~fs~dg~~Las~s~-------------Dg~I~iwDl~~~~-- 261 (713)
..|..|+++.. . ....+.. .......|+|.+|+.++++.+. .|+|.-+|....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666666433 1 1111111 1122467999999966555433 2467666654320
Q ss_pred ----------eEEEEccCCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCc--------------------------
Q 005123 262 ----------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDS--LVKLWDAKSGR-------------------------- 303 (713)
Q Consensus 262 ----------~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg--~I~IwDl~t~~-------------------------- 303 (713)
....+..-......++|+++...|+++.... .=.|.-+..+.
T Consensus 178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~ 257 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIV 257 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSC
T ss_pred CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCC
Confidence 1111211224578899999434454443321 11222121111
Q ss_pred -----eEEEEccCCCCeEEEEEcC-------CCCEEEEEECCCeEEEEECCCCeeEEE---eecCCCCeEEEEEeCCCCC
Q 005123 304 -----ELCSFHGHKNMVLCVKWNQ-------NGNWVLTASKDQIIKLYDIRAMKELES---FRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 304 -----~~~~~~~h~~~I~si~fsp-------dg~~Latgs~Dg~I~IwDl~t~~~l~~---~~~h~~~V~sl~fsp~~~~ 368 (713)
.+..+. +......+.|.. ++++|++....+.|...+++.++.+.. +......+..+++.+ ++.
T Consensus 258 ~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~ 335 (353)
T 2g8s_A 258 AGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DGY 335 (353)
T ss_dssp TTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TSC
T ss_pred CCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CCc
Confidence 111122 223567788864 466777666778888888876554332 222345789999999 566
Q ss_pred EEEEE
Q 005123 369 YFVSG 373 (713)
Q Consensus 369 ~lasg 373 (713)
++++.
T Consensus 336 lyv~t 340 (353)
T 2g8s_A 336 LYVLT 340 (353)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.78 E-value=0.0015 Score=68.03 Aligned_cols=207 Identities=10% Similarity=0.081 Sum_probs=105.5
Q ss_pred EEEEECCCcEEEEeCCCCceEEEEec--cCCCEEEEEEccCCCEEEEEeC-----C------CcEEEEEcCCCceeeeec
Q 005123 159 LITGSQSGEFTLWNGQSFNFEMILQA--HDHAIRSMVWSHNDNWMVSGDD-----G------GAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 159 Latgs~dg~V~Iwd~~t~~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~-----D------G~I~vwdl~~~~~~~~~~ 225 (713)
++.|+ ..+.+||..+.+... ... ........+...++++++.|+. . ..+.+||..+++-...-.
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 44454 579999998877543 221 1122233333447788888873 1 126778887765332211
Q ss_pred cCCCCe-eEEEEecCCCEEEEEECC--------CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeC-C--
Q 005123 226 AHKESV-RDLSFCRTDLKFCSCSDD--------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK-D-- 291 (713)
Q Consensus 226 ~~~~~V-~~l~fs~dg~~Las~s~D--------g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~-D-- 291 (713)
...... .+++.. +++.++.|+.+ ..+.+||..+.+-... +........++.+ ++++++.|+. +
T Consensus 85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVIGGKGSDR 161 (315)
T ss_dssp BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCTTS
T ss_pred CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEEeCCCCCC
Confidence 111111 112222 55666666532 4689999887643221 1111122223332 4667777765 2
Q ss_pred ---CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeeEEE--eecCCCCeEE
Q 005123 292 ---SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELES--FRGHRKDVTA 359 (713)
Q Consensus 292 ---g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~Dg-----~I~IwDl~t~~~l~~--~~~h~~~V~s 359 (713)
..+.+||..+.+-... +........++.+ ++++++.|+.++ .+.+||+.+.+-... +.........
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 239 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL 239 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence 4589999987643221 1111112222333 677777877654 588999987543322 1111222223
Q ss_pred EEEeCCCCCEEEEEECC
Q 005123 360 LAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 360 l~fsp~~~~~lasgs~D 376 (713)
+.+ ++.+++.|+.+
T Consensus 240 ~~~---~~~l~v~GG~~ 253 (315)
T 4asc_A 240 VSL---VGTLYAIGGFA 253 (315)
T ss_dssp EEE---TTEEEEEEEEE
T ss_pred EEE---CCEEEEECCcc
Confidence 332 56777777753
No 321
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.71 E-value=0.019 Score=60.97 Aligned_cols=192 Identities=9% Similarity=0.104 Sum_probs=114.3
Q ss_pred ceEEEEEccCCCEEEEE------------ECCCcEEEEeCCCC--ceE-EEEec-----cCCCEEEEEEcc--CCC-EEE
Q 005123 146 SINRVLWTPTGRRLITG------------SQSGEFTLWNGQSF--NFE-MILQA-----HDHAIRSMVWSH--NDN-WMV 202 (713)
Q Consensus 146 ~V~~v~~spdg~~Latg------------s~dg~V~Iwd~~t~--~~~-~~l~~-----h~~~V~sl~~sp--dg~-~L~ 202 (713)
....+++.++|..++++ ..+|.|.++|.++. +.. ..+.+ .......|.+.. +++ +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566677777544443 16899999998742 221 12222 224567777765 354 455
Q ss_pred EEe-C--CCcEEEEEcCCCc----eeeeecc-CCCCeeEEEEecCCCEEEEEEC-----------------CCeEEEEEc
Q 005123 203 SGD-D--GGAIKYWQNNMNN----VKANKSA-HKESVRDLSFCRTDLKFCSCSD-----------------DTTVKVWDF 257 (713)
Q Consensus 203 sgs-~--DG~I~vwdl~~~~----~~~~~~~-~~~~V~~l~fs~dg~~Las~s~-----------------Dg~I~iwDl 257 (713)
++. . +..|.||+++... .+..+.. .-...+++.+.++|.++++... .|.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 543 2 4678888776532 1222222 2246789999999987776541 244555554
Q ss_pred CCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cce--EEEEccCCCCeEEEEEcC-CCCEEEEEEC
Q 005123 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKS-GRE--LCSFHGHKNMVLCVKWNQ-NGNWVLTASK 332 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t-~~~--~~~~~~h~~~I~si~fsp-dg~~Latgs~ 332 (713)
++. ..+...-..-+.|+|++|++.|+++. ..+.|..||++. ++. .+.+ ........+++.. +|++.+++..
T Consensus 211 --~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 --NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp --TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred --CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 322 22323345678999999998877765 467899999864 332 2233 2346678899998 5987776654
Q ss_pred C-CeEEEEEC
Q 005123 333 D-QIIKLYDI 341 (713)
Q Consensus 333 D-g~I~IwDl 341 (713)
+ +.|..||-
T Consensus 287 ~g~~v~~~~P 296 (355)
T 3sre_A 287 NGMRIFFYDA 296 (355)
T ss_dssp CHHHHHSCCT
T ss_pred CceEEEEECC
Confidence 4 24444443
No 322
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.70 E-value=0.05 Score=57.54 Aligned_cols=230 Identities=10% Similarity=0.103 Sum_probs=125.6
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE------eccCCCEEEEEEccC---CCEEEEE---eCCCc
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL------QAHDHAIRSMVWSHN---DNWMVSG---DDGGA 209 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l------~~h~~~V~sl~~spd---g~~L~sg---s~DG~ 209 (713)
..-..-+.|+|.+||++|++-...|.|++++..+++..... .........|+|+|+ +.+|++. ..++.
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 34456789999999986666655899999987655543221 123566889999985 4455543 23455
Q ss_pred EEEEEcCCC----------ceee-eec-cCCCCeeEEEEecCCCEEEEEEC-------------CCeEEEEEcCCC----
Q 005123 210 IKYWQNNMN----------NVKA-NKS-AHKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARC---- 260 (713)
Q Consensus 210 I~vwdl~~~----------~~~~-~~~-~~~~~V~~l~fs~dg~~Las~s~-------------Dg~I~iwDl~~~---- 260 (713)
|.-|.+..+ +.+. .+. ........|.|.+|+.++++.++ .|.|.-.+....
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 666665541 1111 111 11223467999999987777543 345555554322
Q ss_pred ----eeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce------------------EEEEccCCCCeEE
Q 005123 261 ----QEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRE------------------LCSFHGHKNMVLC 317 (713)
Q Consensus 261 ----~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t~~~------------------~~~~~~h~~~I~s 317 (713)
.....-.++ .....++|++++.++++-. .|+.-.|.-+..+.. +..+..+......
T Consensus 189 nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G 267 (347)
T 3das_A 189 NPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG 267 (347)
T ss_dssp CSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred CCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence 111111233 3466899999876554432 222222222222211 1222222234567
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCee----EEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~~~----l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
++|. ++..++.....+.|....++.... ...+.+....+..|+..+ ++.++++.+
T Consensus 268 ~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 268 IAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp EEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred eEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEEEc
Confidence 7776 455555555566676667654432 222333346788888888 565555443
No 323
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.64 E-value=0.063 Score=65.94 Aligned_cols=274 Identities=10% Similarity=0.065 Sum_probs=151.7
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCE-EEEEEccCC--CEEEEEeCCCcEEEEEcCCCce-e
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAI-RSMVWSHND--NWMVSGDDGGAIKYWQNNMNNV-K 221 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V-~sl~~spdg--~~L~sgs~DG~I~vwdl~~~~~-~ 221 (713)
+|.-..|...+..-+.++.+.-..+|..+ ++.... ......+ ....|+... +-++..+ ++.++|..++.... .
T Consensus 653 pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~ 729 (1158)
T 3ei3_A 653 PTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLH 729 (1158)
T ss_dssp CCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEE
T ss_pred ceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCee
Confidence 44444444445444444445555555443 222222 1112223 334454332 3455444 45688887754322 1
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEECC-------------------------------------------------CeE
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSDD-------------------------------------------------TTV 252 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~D-------------------------------------------------g~I 252 (713)
.........+..++++++.+.++++..+ ..|
T Consensus 730 ~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i 809 (1158)
T 3ei3_A 730 IRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNL 809 (1158)
T ss_dssp EEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEE
T ss_pred EEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEE
Confidence 1112345677788888777665443311 236
Q ss_pred EEEEcCCCeeEEEEcc-CCCceEEEE---EcCC-CCEEEEEe----------CCCcEEEEECCCCceEEEE-ccCCCCeE
Q 005123 253 KVWDFARCQEERSLTG-HGWDVKSVD---WHPT-KSLLVSGG----------KDSLVKLWDAKSGRELCSF-HGHKNMVL 316 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~-h~~~V~sl~---~spd-g~~L~sgs----------~Dg~I~IwDl~t~~~~~~~-~~h~~~I~ 316 (713)
+++|-.+.+.+..+.- ....+.|++ |..+ ..+|++|+ ..|.|++|++.+++..... +..++.|+
T Consensus 810 ~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~ 889 (1158)
T 3ei3_A 810 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVY 889 (1158)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEE
T ss_pred EEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCE
Confidence 6666666665544432 223344444 3322 46888886 3477999998744322211 22467788
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeeEE-EeecCCCC-eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe
Q 005123 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKD-VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~-~~~~h~~~-V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~ 394 (713)
+++-- +| +|++|- ..+|+|||+...+.+. ....+..- +..+.. .+++|+.|..-..|.++..+.....+..+
T Consensus 890 al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~---~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~ 963 (1158)
T 3ei3_A 890 SMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKT---KGDFILVGDLMRSVLLLAYKPMEGNFEEI 963 (1158)
T ss_dssp EEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEE---ETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred EEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEec---cCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence 88743 45 455443 5789999998665444 11112211 224433 46788899888888777654433333332
Q ss_pred --cccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCC
Q 005123 395 --NVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRP 428 (713)
Q Consensus 395 --~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~ 428 (713)
..+...++++.+-.++.++++ .++.+.+..++..
T Consensus 964 a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp EECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred EeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence 334567889999877777776 8899999988764
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.64 E-value=0.042 Score=60.43 Aligned_cols=105 Identities=10% Similarity=0.205 Sum_probs=62.6
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee--eecc------CCCCeeEEEEecC---CCEEEEEEC------
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA--NKSA------HKESVRDLSFCRT---DLKFCSCSD------ 248 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~--~~~~------~~~~V~~l~fs~d---g~~Las~s~------ 248 (713)
-.....|+|.++|+++++-...+.|++++..++.... .+.. ....+..|+|+++ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3466799999999877665444578888765554322 2211 2356679999995 555554442
Q ss_pred -------CCeEEEEEcCCC--e-----eEE-EEc-cCCCceEEEEEcCCCCEEEEEeC
Q 005123 249 -------DTTVKVWDFARC--Q-----EER-SLT-GHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 249 -------Dg~I~iwDl~~~--~-----~~~-~l~-~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
...|..|++... + .+. .+. ........|+|.+||+++++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665321 1 111 121 11234789999999987776553
No 325
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.63 E-value=0.0012 Score=67.99 Aligned_cols=185 Identities=13% Similarity=0.101 Sum_probs=98.8
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCCc---eEEEEe--ccCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCc
Q 005123 155 TGRRLITGSQS-----GEFTLWNGQSFN---FEMILQ--AHDHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNN 219 (713)
Q Consensus 155 dg~~Latgs~d-----g~V~Iwd~~t~~---~~~~l~--~h~~~V~sl~~spdg~~L~sgs~D-----G~I~vwdl~~~~ 219 (713)
++++++.|+.+ ..+.+||..+.+ ....-. .......++.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56677777754 468999988766 433321 11112222222 56677777643 358888988765
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeCC-
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKD- 291 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~D- 291 (713)
-...-..........+..-+++.++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.+
T Consensus 140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 217 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDG 217 (301)
T ss_dssp EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCC
Confidence 333221111111111122266666666543 4688999887654332 1111122233333 46777777664
Q ss_pred ----CcEEEEECCCCceEEEE--ccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCe
Q 005123 292 ----SLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMK 345 (713)
Q Consensus 292 ----g~I~IwDl~t~~~~~~~--~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~ 345 (713)
..|.+||+++.+-...- ........++.+ ++++++.|+.+ ..|.+||+++.+
T Consensus 218 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 46899999876543221 111112222333 66777777655 357888887644
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.63 E-value=0.0039 Score=64.84 Aligned_cols=201 Identities=12% Similarity=0.126 Sum_probs=99.4
Q ss_pred cEEEEeCCCCceEEE-EeccCCCEEEEEEccCCCEEEEEeC----CC-------cEEEEEcCCCceeeeec--cCCCCee
Q 005123 167 EFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDD----GG-------AIKYWQNNMNNVKANKS--AHKESVR 232 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~----DG-------~I~vwdl~~~~~~~~~~--~~~~~V~ 232 (713)
.+.+||..+.+.... +..........+...++.+++.|+. ++ .+.+||..+.+-...-. ......
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~- 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF- 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-
Confidence 388999888765442 1111112222333446778888873 12 16778877765433211 111111
Q ss_pred EEEEecCCCEEEEEECC-------CeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeC------CCcEEEE
Q 005123 233 DLSFCRTDLKFCSCSDD-------TTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGK------DSLVKLW 297 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~D-------g~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~------Dg~I~Iw 297 (713)
+++.. +++.++.|+.+ ..+.+||..+.+-...-. .......++. -++++++.|+. ...+.+|
T Consensus 104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEE
T ss_pred ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEE
Confidence 22222 56666777653 358888987764332211 1111112222 25666677654 2358999
Q ss_pred ECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeeE--EEeecCCCCeEEEEEeCCCCC
Q 005123 298 DAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKEL--ESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 298 Dl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~~l--~~~~~h~~~V~sl~fsp~~~~ 368 (713)
|+.+.+-... +........++.+ ++++++.|+.+ ..+.+||+.+.+-. ..+.........+.+ ++.
T Consensus 181 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~ 255 (318)
T 2woz_A 181 NPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL---AGS 255 (318)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE---TTE
T ss_pred cCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE---CCE
Confidence 9987653322 1111111222333 66777777643 35788998765422 222211222222322 467
Q ss_pred EEEEEECC
Q 005123 369 YFVSGSLD 376 (713)
Q Consensus 369 ~lasgs~D 376 (713)
+++.|+.+
T Consensus 256 i~v~GG~~ 263 (318)
T 2woz_A 256 LYAIGGFA 263 (318)
T ss_dssp EEEECCBC
T ss_pred EEEECCee
Confidence 77776654
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.60 E-value=0.0043 Score=63.96 Aligned_cols=181 Identities=9% Similarity=0.078 Sum_probs=94.8
Q ss_pred EEEEEeC--CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC----CeEEEEEcCCCeeEEEE--ccCCC
Q 005123 200 WMVSGDD--GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSL--TGHGW 271 (713)
Q Consensus 200 ~L~sgs~--DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D----g~I~iwDl~~~~~~~~l--~~h~~ 271 (713)
+++.|+. ...+.+||..+++-...-..........+..-++..++.|+.+ ..+.+||..+.+-...- .....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 4455554 3578888888765432211111111111122366667777654 67889998876543322 11122
Q ss_pred ceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEEC---------CC
Q 005123 272 DVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASK---------DQ 334 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~D------g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~---------Dg 334 (713)
....+.+ ++++++.|+.+ ..+.+||..+.+-... +.........+.+ ++++++.|+. ..
T Consensus 94 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 94 SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECC
T ss_pred ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccc
Confidence 2233333 56777777765 4589999987653322 1111112222222 6666666653 34
Q ss_pred eEEEEECCCCeeEEE--eecCCCCeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCCC
Q 005123 335 IIKLYDIRAMKELES--FRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHE 387 (713)
Q Consensus 335 ~I~IwDl~t~~~l~~--~~~h~~~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~~ 387 (713)
.+.+||+.+.+-... +......-..+.+ ++.+++.|+.+ ..|.+||+.+.
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 589999987643222 2111122222332 56677777654 35888888665
No 328
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.56 E-value=0.0013 Score=69.50 Aligned_cols=230 Identities=11% Similarity=0.027 Sum_probs=112.2
Q ss_pred CCCEEEEEEC-CCcEEEEeCCC--CceEEEEec-c---CCCEEEEEEccCCCEEEEEeC-C---------CcEEEEEcCC
Q 005123 155 TGRRLITGSQ-SGEFTLWNGQS--FNFEMILQA-H---DHAIRSMVWSHNDNWMVSGDD-G---------GAIKYWQNNM 217 (713)
Q Consensus 155 dg~~Latgs~-dg~V~Iwd~~t--~~~~~~l~~-h---~~~V~sl~~spdg~~L~sgs~-D---------G~I~vwdl~~ 217 (713)
++++++.|+. ...+.+||..+ .+.. .+.. . ...-.++.+ ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 5666666654 35688999864 3222 2211 1 111222222 5667777665 2 4688889887
Q ss_pred CceeeeeccC-CCCeeEEEEecCCCEEEEEECC---------------------------------------CeEEEEEc
Q 005123 218 NNVKANKSAH-KESVRDLSFCRTDLKFCSCSDD---------------------------------------TTVKVWDF 257 (713)
Q Consensus 218 ~~~~~~~~~~-~~~V~~l~fs~dg~~Las~s~D---------------------------------------g~I~iwDl 257 (713)
.+-....... .......++.-++++++.|+.+ ..|.+||.
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred CcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 7533322111 1122222222467777777754 57999998
Q ss_pred CCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeC------CCcEEEEEC--CCCceEE--EEccCCCCeEEEEEcCCCC
Q 005123 258 ARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDA--KSGRELC--SFHGHKNMVLCVKWNQNGN 325 (713)
Q Consensus 258 ~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~------Dg~I~IwDl--~t~~~~~--~~~~h~~~I~si~fspdg~ 325 (713)
.+.+-... +......-.+++.. ++++++.|+. ...+.+||+ .+.+-.. .+..........+...+++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 254 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDS 254 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTE
T ss_pred CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCE
Confidence 87643322 22111111233332 4666666653 345778887 3332111 1111111111112223667
Q ss_pred EEEEEECC----------------------CeEEEEECCCC--eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC----
Q 005123 326 WVLTASKD----------------------QIIKLYDIRAM--KELESFRGHRKDVTALAWHPFHEEYFVSGSLDG---- 377 (713)
Q Consensus 326 ~Latgs~D----------------------g~I~IwDl~t~--~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG---- 377 (713)
+++.|+.+ ..+.+||+.+. +.+..+......-.++.+ ++++++.|+.++
T Consensus 255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~ 331 (357)
T 2uvk_A 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKA 331 (357)
T ss_dssp EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCE
T ss_pred EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCE
Confidence 77777632 25788998754 344433332232233333 577888888653
Q ss_pred --cEEEEEcCCCCceE
Q 005123 378 --SIFHWLVGHETPQV 391 (713)
Q Consensus 378 --~I~Iwd~~~~~~~~ 391 (713)
.|.++++++++...
T Consensus 332 ~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 332 VTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEC-CCSCEE
T ss_pred eeeEEEEEEcCcEeEe
Confidence 35556776655433
No 329
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.55 E-value=0.0043 Score=63.87 Aligned_cols=173 Identities=12% Similarity=0.083 Sum_probs=88.9
Q ss_pred CcEEEEEcCCCceeeeeccCCCCe-eEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeEEE--EccCCCceEEEEEc
Q 005123 208 GAIKYWQNNMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWH 279 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~~~~~V-~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~s 279 (713)
..+.+||+.+.+-...-....... .+++. -++..++.|+.+ ..+.+||..+.+-... +.........+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence 357778877765332211111111 12222 256666666644 3588999877653322 1111122233333
Q ss_pred CCCCEEEEEeCCC-----cEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCe
Q 005123 280 PTKSLLVSGGKDS-----LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASK-------DQIIKLYDIRAMK 345 (713)
Q Consensus 280 pdg~~L~sgs~Dg-----~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~-------Dg~I~IwDl~t~~ 345 (713)
++++++.|+.++ .+.+||+.+.+-... +........++.+ ++++++.|+. ...+.+||+.+.+
T Consensus 108 -~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 -NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp -TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred -CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 467777777553 478899887653322 1111122222233 5666666653 2458999998754
Q ss_pred eEE--EeecCCCCeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCCCC
Q 005123 346 ELE--SFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHET 388 (713)
Q Consensus 346 ~l~--~~~~h~~~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~~~ 388 (713)
-.. .+.........+.+ ++.+++.|+.+ ..|.+||+.+..
T Consensus 185 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 185 WTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 332 22211222223332 56777777764 368889986653
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.53 E-value=0.049 Score=59.92 Aligned_cols=105 Identities=11% Similarity=0.186 Sum_probs=63.2
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec--------cCCCEEEEEEccC---CCEEEEEeC------
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA--------HDHAIRSMVWSHN---DNWMVSGDD------ 206 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~--------h~~~V~sl~~spd---g~~L~sgs~------ 206 (713)
-...+.|+|.+||+++++-...+.|++++..+++....... ....+..|+|+|+ +.+|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34678999999998666654445799998665544322211 2456779999996 566655432
Q ss_pred -------CCcEEEEEcCCC-------ceeee-ec-cCCCCeeEEEEecCCCEEEEEEC
Q 005123 207 -------GGAIKYWQNNMN-------NVKAN-KS-AHKESVRDLSFCRTDLKFCSCSD 248 (713)
Q Consensus 207 -------DG~I~vwdl~~~-------~~~~~-~~-~~~~~V~~l~fs~dg~~Las~s~ 248 (713)
...|.-|+++.. +.+.. +. ........|+|.+|+.++++.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 134555554322 11111 11 11234788999999987776553
No 331
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=97.52 E-value=0.085 Score=56.62 Aligned_cols=269 Identities=13% Similarity=0.146 Sum_probs=144.0
Q ss_pred CCEEEEEECCCcEEEEeCCC--------CceEEEEe---c-cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-----
Q 005123 156 GRRLITGSQSGEFTLWNGQS--------FNFEMILQ---A-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----- 218 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t--------~~~~~~l~---~-h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~----- 218 (713)
.+.++.-..||+|+.|-... ........ . ....|..|+. .....+.-..||.|..|-.+..
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~ 87 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGI 87 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCC
Confidence 34456666778888884322 11111111 0 1224555543 3456666678899999954321
Q ss_pred ---c---eeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-----------eeEEEEcc-CCCceEEEEEc
Q 005123 219 ---N---VKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-----------QEERSLTG-HGWDVKSVDWH 279 (713)
Q Consensus 219 ---~---~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-----------~~~~~l~~-h~~~V~sl~~s 279 (713)
+ ....+. .....+..++++......++.+.||.|+.|-.... .....+.. ....|..|+..
T Consensus 88 g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G 167 (389)
T 3kci_A 88 GGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 167 (389)
T ss_dssp SSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC
Confidence 0 111111 12234555667666677777888999999965321 11122222 12357777665
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-Cc----------eEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKS-GR----------ELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--- 344 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t-~~----------~~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~--- 344 (713)
....++...||.|+.|-... ++ ....+.. ....|..|+......+.++...|+.|+.|-....
T Consensus 168 --~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqL 245 (389)
T 3kci_A 168 --GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKL 245 (389)
T ss_dssp --SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTT
T ss_pred --cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCC
Confidence 45666677899999996532 11 1111111 2345667766443467777889999999975421
Q ss_pred --------eeEEEeec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC--------c---eEEEecccCCCeEEE
Q 005123 345 --------KELESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--------P---QVEIHNVHDNTVWDL 404 (713)
Q Consensus 345 --------~~l~~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~--------~---~~~~~~~h~~~V~~l 404 (713)
.....+.. ....|..|+. +....++-..||.|+.|=..... . ...+.......|..|
T Consensus 246 G~g~~~~~~~p~~v~~~~~~~v~~v~~---G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~i 322 (389)
T 3kci_A 246 GRGGSDGCKVPMKIDSLTGLGVVKVEC---GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAI 322 (389)
T ss_dssp SSSSCCCEEEEEECGGGTTSCEEEEEE---ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEE
T ss_pred CCCCCCCccccEEecccCCCcEEEEeC---CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEE
Confidence 11111221 2234777765 44566667889999999763211 0 111111123467777
Q ss_pred EEcCCCcEEEEeCCcEEEEecCCCCCc
Q 005123 405 AWHPIGYLLCSNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 405 ~~spdg~~laS~Dg~v~iWd~~~~~~~ 431 (713)
+......++.+.|+.|..|=.+..+..
T Consensus 323 a~G~~h~~al~~~G~v~~wG~n~~GqL 349 (389)
T 3kci_A 323 ATGSLHCVCCTEDGEVYTWGDNDEGQL 349 (389)
T ss_dssp EECSSEEEEEETTCCEEEEECCTTSTT
T ss_pred EeccCeEEEECCCCCEEEeeCCCCCcC
Confidence 776666666679999999988766553
No 332
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.52 E-value=0.04 Score=58.46 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=102.5
Q ss_pred CCCcEEEEEcCCC--cee-eeecc-----CCCCeeEEEEec--CCC-EEEEEEC---CCeEEEEEcCCC--ee--EEEEc
Q 005123 206 DGGAIKYWQNNMN--NVK-ANKSA-----HKESVRDLSFCR--TDL-KFCSCSD---DTTVKVWDFARC--QE--ERSLT 267 (713)
Q Consensus 206 ~DG~I~vwdl~~~--~~~-~~~~~-----~~~~V~~l~fs~--dg~-~Las~s~---Dg~I~iwDl~~~--~~--~~~l~ 267 (713)
.+|.|.++|.++. +.. ..+.+ ..-....|.+.. ++. +|+++.. +.+|.+|+++.. .. +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998742 221 11121 123567777766 343 4555532 467888877543 21 22333
Q ss_pred c-CCCceEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEE
Q 005123 268 G-HGWDVKSVDWHPTKSLLVSGGK-----------------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 268 ~-h~~~V~sl~~spdg~~L~sgs~-----------------Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Lat 329 (713)
+ .....+++.+.++|.+.++... .+.|..||. ++ +..+...-..-+.|+||+|+++|++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 2 2346889999999987776541 244555554 33 2233323455789999999988887
Q ss_pred EE-CCCeEEEEECCC-Ce--eEEEeecCCCCeEEEEEeCCCCCEEEEEECC-CcEEEEE
Q 005123 330 AS-KDQIIKLYDIRA-MK--ELESFRGHRKDVTALAWHPFHEEYFVSGSLD-GSIFHWL 383 (713)
Q Consensus 330 gs-~Dg~I~IwDl~t-~~--~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D-G~I~Iwd 383 (713)
+. ..+.|+.||+.. ++ ....+. .....-.+++..+++++++++..+ +.|..|+
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 65 567899999863 32 223342 345567888876237777766544 3444444
No 333
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.004 Score=65.71 Aligned_cols=189 Identities=11% Similarity=0.025 Sum_probs=109.3
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEecc-CCCEEEEEE--ccCCCEEEEE--eCCCcEEEEEcCCCceeeeeccC----
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAH-DHAIRSMVW--SHNDNWMVSG--DDGGAIKYWQNNMNNVKANKSAH---- 227 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~--spdg~~L~sg--s~DG~I~vwdl~~~~~~~~~~~~---- 227 (713)
.++++++.||.|+-+|.++++.+-.+... ...+....- ...+..++++ +.||.|..++.+++.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47899999999999999999988887654 122221110 0112234433 58999999998887544333211
Q ss_pred CCCeeE---EEE-----ecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC-------ceEEEEEc-----CCCCEEEE
Q 005123 228 KESVRD---LSF-----CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-------DVKSVDWH-----PTKSLLVS 287 (713)
Q Consensus 228 ~~~V~~---l~f-----s~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~-------~V~sl~~s-----pdg~~L~s 287 (713)
...+.. ..+ ...+..+++++.++++...|+++++.+..+..... ...|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111111 000 01456788999999999999999999988864321 01111111 12456777
Q ss_pred EeCCCcEEEEECCCCceEEEEc-----cCCCC--e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE
Q 005123 288 GGKDSLVKLWDAKSGRELCSFH-----GHKNM--V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~~~~~~-----~h~~~--I-~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~ 348 (713)
+..+..|.+.+ ++++ +..++ ..... + .+..++.|+.+ ++++.||.|.-+|.++++.+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777777 4453 21111 00000 0 00001224565 557899999999999888776
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.36 E-value=0.0047 Score=63.97 Aligned_cols=183 Identities=10% Similarity=0.012 Sum_probs=93.5
Q ss_pred CCCEEEEEeCC----CcEEEEEcCCCceeeeeccCCCCe-eEEEEecCCCEEEEEEC----C-----CeEEEEEcCCCee
Q 005123 197 NDNWMVSGDDG----GAIKYWQNNMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSD----D-----TTVKVWDFARCQE 262 (713)
Q Consensus 197 dg~~L~sgs~D----G~I~vwdl~~~~~~~~~~~~~~~V-~~l~fs~dg~~Las~s~----D-----g~I~iwDl~~~~~ 262 (713)
++.+++.|+.+ ..+.+||..+.+-...-....... .+++. -++..++.|+. + ..+.+||..+.+-
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 44555555521 357788877665332211111111 12222 25666666554 2 4688899877643
Q ss_pred EEE--EccCCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC
Q 005123 263 ERS--LTGHGWDVKSVDWHPTKSLLVSGGKD-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 263 ~~~--l~~h~~~V~sl~~spdg~~L~sgs~D-----g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D 333 (713)
... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.+
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 178 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD 178 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence 221 1111222233333 56677776643 3588999887643221 1111122223333 66777777654
Q ss_pred -----CeEEEEECCCCeeEE--EeecCCCCeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCCC
Q 005123 334 -----QIIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHE 387 (713)
Q Consensus 334 -----g~I~IwDl~t~~~l~--~~~~h~~~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~~ 387 (713)
..+.+||+.+.+-.. .+.........+.+ ++.+++.|+.+ ..|.+||+.+.
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 468999988654322 11111122233333 56777777664 46889998665
No 335
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=97.33 E-value=0.011 Score=60.71 Aligned_cols=251 Identities=12% Similarity=0.080 Sum_probs=128.5
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
.|..|+.... +.+.-. ||.|+.|-......+..-......|..|+...+ ..++. . ||.|..|-.+....+..-.
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 3555554433 223235 888999975442211111112345667776533 23333 4 8999999765432221111
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 005123 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~ 305 (713)
.....|..|+...+ ..+.-. ||.|+.|-......+-.-......|..|+...+. .+.-. ||.|+.|-......+
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCC
Confidence 22346777776543 333344 9999999765432221111233467777765332 33334 799999976542222
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 306 ~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
..-......|..|+...+ +.++- .||.|+.|-......+..-......|..|+.. ....++.. ||.|+.|=.+
T Consensus 173 g~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G---~~h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASG---EWYSLALK-NGKVIAWGSS 245 (282)
T ss_dssp SCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEC---SSCEEEEE-TTEEEEESTT
T ss_pred CCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcC---CCEEEEEE-CCEEEEecCC
Confidence 111112345777765433 33333 59999999765432221111122457777754 33333334 9999999765
Q ss_pred CCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcE
Q 005123 386 HETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTT 420 (713)
Q Consensus 386 ~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v 420 (713)
..... .+ ...|.+|+......+..+.|+..
T Consensus 246 ~~gq~-~v----~~~v~~iaaG~~h~~al~~~~~~ 275 (282)
T 3qhy_B 246 RTAPS-SV----QSGVSSIEAGPNAAYALKGGSGS 275 (282)
T ss_dssp CCCCG-GG----SSCEEEEEECSSCEEEEEC----
T ss_pred CCccc-cC----CCCcEEEEECcCeEEEEecCCCC
Confidence 44321 11 23577777666665555544433
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.32 E-value=0.0061 Score=63.22 Aligned_cols=188 Identities=9% Similarity=0.018 Sum_probs=96.6
Q ss_pred EccCCCEEEEEEC----C-------CcEEEEeCCCCceEEEEeccC--CCEEEEEEccCCCEEEEEeCC--------CcE
Q 005123 152 WTPTGRRLITGSQ----S-------GEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMVSGDDG--------GAI 210 (713)
Q Consensus 152 ~spdg~~Latgs~----d-------g~V~Iwd~~t~~~~~~l~~h~--~~V~sl~~spdg~~L~sgs~D--------G~I 210 (713)
..-++++++.|+. + ..+.+||..+.+....-.... .....+.+ ++++++.|+.+ ..+
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCE
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceE
Confidence 3347778888873 1 227788988765432211111 11112222 56666676632 458
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-C-----CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCC
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTK 282 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-D-----g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg 282 (713)
.+||..+++-...-..........+..-+++.++.|+. + ..+.+||..+.+-... +........++.+ ++
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 197 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DG 197 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT
T ss_pred EEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CC
Confidence 88998876533221111111111122235666666665 2 4689999887643221 1111122233333 56
Q ss_pred CEEEEEeCCC-----cEEEEECCCCceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCC--------------eEEEEEC
Q 005123 283 SLLVSGGKDS-----LVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQ--------------IIKLYDI 341 (713)
Q Consensus 283 ~~L~sgs~Dg-----~I~IwDl~t~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg--------------~I~IwDl 341 (713)
++++.|+.++ .+.+||+.+.+-...- .........+.+ ++++++.|+.++ .|.+||+
T Consensus 198 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~ 275 (315)
T 4asc_A 198 RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE 275 (315)
T ss_dssp EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET
T ss_pred EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC
Confidence 7778877654 4889999876433221 111122223333 667777776532 3677777
Q ss_pred CCCe
Q 005123 342 RAMK 345 (713)
Q Consensus 342 ~t~~ 345 (713)
++.+
T Consensus 276 ~~~~ 279 (315)
T 4asc_A 276 EEKK 279 (315)
T ss_dssp TTTE
T ss_pred CCCh
Confidence 6644
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.31 E-value=0.03 Score=58.13 Aligned_cols=213 Identities=7% Similarity=0.026 Sum_probs=112.9
Q ss_pred cCCCEEEEEe--CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC--------------CeEEEEEcCC
Q 005123 196 HNDNWMVSGD--DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--------------TTVKVWDFAR 259 (713)
Q Consensus 196 pdg~~L~sgs--~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D--------------g~I~iwDl~~ 259 (713)
.++..|+... .++.|...+.+....... .. .. +--++.++.+|+-+... ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l-~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKL-SN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEE-EE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEc-cC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 3566666553 245555555544433222 11 11 23446688887776543 4677778776
Q ss_pred CeeEEEEccCCCceEEEEEcCCCCEEEEEe--C--CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC-CC
Q 005123 260 CQEERSLTGHGWDVKSVDWHPTKSLLVSGG--K--DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-DQ 334 (713)
Q Consensus 260 ~~~~~~l~~h~~~V~sl~~spdg~~L~sgs--~--Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~-Dg 334 (713)
.+...... . . +..|++++++|+... . +..|+..+++... ...+..+.. ..|+++++.|+..+. +.
T Consensus 98 ~~~~~l~~-~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTVLDP-D--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEEEEC-S--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceEeec-C--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 65433322 1 1 225666788888776 3 3456666776433 334433322 345668888886665 67
Q ss_pred eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC--cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcE
Q 005123 335 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 335 ~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG--~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (713)
.|.+.++..+.....+. .... ..++| ++.+|+-...++ .|..-+++... ...+. +..+.. |++++..
T Consensus 168 ~Iy~~~l~g~~~~~l~~---~~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt--~~~~~~--~~~~g~~ 236 (302)
T 3s25_A 168 QLYRYDTASQSEALFYD---CNCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPN--PVVLT--EANIEH--YNVYGSL 236 (302)
T ss_dssp CEEEEETTTTEEEEEEC---SCEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCC--CEECS--CSCEEE--EEEETTE
T ss_pred eEEEEECCCCCEEEEeC---CCcc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCC--eEEEe--CCCcce--EEECCCE
Confidence 89999988766544433 2222 34567 455555444432 45444543332 33332 233433 5555544
Q ss_pred E--EEeCCcEEEEecCCCCCcccc
Q 005123 413 L--CSNDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 413 l--aS~Dg~v~iWd~~~~~~~~~~ 434 (713)
| ++..+.-.||.++..+...+.
T Consensus 237 Iy~~~~~~~~~i~~~~~DG~~r~~ 260 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKNDGTGFKE 260 (302)
T ss_dssp EEEEECSSSCEEEEEETTSCCCEE
T ss_pred EEEEECCCCcEEEEEECCCCccEE
Confidence 4 333333567777666655433
No 338
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=97.23 E-value=0.042 Score=56.33 Aligned_cols=226 Identities=12% Similarity=0.045 Sum_probs=127.2
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l 266 (713)
..|..|+... .+.+.-. ||.|..|-.+....+..-......|..|+...+.. ++. . ||.|+.|-....-.+-.-
T Consensus 24 ~~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCC
Confidence 3566776643 2333335 89999997654322211122334677777654333 333 4 899999986543221111
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee
Q 005123 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346 (713)
Q Consensus 267 ~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~ 346 (713)
......|..|+...+ ..++-. ||.|+.|-......+-.-......|..|+... .+.++-. ||.|+.|-......
T Consensus 98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTST
T ss_pred cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCCC
Confidence 112346888877633 344445 89999997654222111111234577666543 3333344 79999997764322
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecC
Q 005123 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426 (713)
Q Consensus 347 l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~ 426 (713)
+..-......|..|+.. ....+.- .||.|+.|=.+....+- +.......|..|+-..+..++.+ |+.|..|=.+
T Consensus 172 lg~p~~~~~~v~~i~~G---~~hs~al-~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 172 TTVPAEAQSGVDDVAGG---IFHSLAL-KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEWYSLALK-NGKVIAWGSS 245 (282)
T ss_dssp TSCCGGGGSSEEEEEEC---SSEEEEE-ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSSCEEEEE-TTEEEEESTT
T ss_pred CCCceecCCCeEEEEec---CCEEEEE-ECCeEEEEECCCCCCCC-CCcccCCCceEEEcCCCEEEEEE-CCEEEEecCC
Confidence 22111123567777764 3333333 59999999875543221 11112346888887777777777 9999999877
Q ss_pred CCCC
Q 005123 427 RPGD 430 (713)
Q Consensus 427 ~~~~ 430 (713)
..+.
T Consensus 246 ~~gq 249 (282)
T 3qhy_B 246 RTAP 249 (282)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 6554
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.08 E-value=0.017 Score=59.83 Aligned_cols=188 Identities=10% Similarity=0.079 Sum_probs=94.3
Q ss_pred EccCCCEEEEEEC----CC-------cEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCC-------CcEE
Q 005123 152 WTPTGRRLITGSQ----SG-------EFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDG-------GAIK 211 (713)
Q Consensus 152 ~spdg~~Latgs~----dg-------~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~D-------G~I~ 211 (713)
...++++++.|+. ++ .+.+||..+.+....-. ........+.+ ++++++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 3456777778773 11 27788887765433211 11111222222 56777777754 3477
Q ss_pred EEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCC
Q 005123 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~ 283 (713)
+||..+.+-...-..........+..-+++.++.|+. ...+.+||+.+.+-... +........++.+ +++
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 208 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGK 208 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred EEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCE
Confidence 8888776543321111111111112235666666653 24589999987653322 1111122233333 467
Q ss_pred EEEEEeCC-----CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC--------------CeEEEEECC
Q 005123 284 LLVSGGKD-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD--------------QIIKLYDIR 342 (713)
Q Consensus 284 ~L~sgs~D-----g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D--------------g~I~IwDl~ 342 (713)
+++.|+.+ ..+.+||+++.+-... +.........+.+ ++++++.|+.+ ..|.+||+.
T Consensus 209 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 286 (318)
T 2woz_A 209 IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD 286 (318)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETT
T ss_pred EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCC
Confidence 77777653 3477899887643221 1111111222222 56677776643 357777877
Q ss_pred CCe
Q 005123 343 AMK 345 (713)
Q Consensus 343 t~~ 345 (713)
+.+
T Consensus 287 ~~~ 289 (318)
T 2woz_A 287 KKE 289 (318)
T ss_dssp TTE
T ss_pred CCE
Confidence 654
No 340
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=97.08 E-value=0.42 Score=52.52 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=124.5
Q ss_pred CCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCc---eeeeec---------cCCCCeeEEEEecC----CCEEEEEEC-
Q 005123 187 HAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNN---VKANKS---------AHKESVRDLSFCRT----DLKFCSCSD- 248 (713)
Q Consensus 187 ~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~~~---~~~~~~---------~~~~~V~~l~fs~d----g~~Las~s~- 248 (713)
..-..|+|.+|++ .|+++...|.|++++.+... .+..+. ........|+|+++ +.++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 56677888999999754321 111111 11356788999986 333333222
Q ss_pred -C----------CeEEEEEcCC----------CeeEEEEc--cCCCceEEEEEcCCCCEEEEEeCCC-------------
Q 005123 249 -D----------TTVKVWDFAR----------CQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDS------------- 292 (713)
Q Consensus 249 -D----------g~I~iwDl~~----------~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~Dg------------- 292 (713)
+ ..|.-|.+.. .+.+..+. ........|+|.+|+.+.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 1444465532 12233322 1223468999999998777766533
Q ss_pred ----cEEEEECCCC---------------------ceEEEEccCCCCeEEEEEcCC-----CC-EEEEEECCC----eEE
Q 005123 293 ----LVKLWDAKSG---------------------RELCSFHGHKNMVLCVKWNQN-----GN-WVLTASKDQ----IIK 337 (713)
Q Consensus 293 ----~I~IwDl~t~---------------------~~~~~~~~h~~~I~si~fspd-----g~-~Latgs~Dg----~I~ 337 (713)
+|.-.|.+.. ..+.. .+|. ....++|++. |+ +++++...+ .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 2333333321 01111 1222 2456889986 34 344332212 123
Q ss_pred EEECCCCe------eEEEeecCC-CCeEEEEEeCCCCC------EEEEEECCCcEEEEEcCCCCc--eEEEe-c------
Q 005123 338 LYDIRAMK------ELESFRGHR-KDVTALAWHPFHEE------YFVSGSLDGSIFHWLVGHETP--QVEIH-N------ 395 (713)
Q Consensus 338 IwDl~t~~------~l~~~~~h~-~~V~sl~fsp~~~~------~lasgs~DG~I~Iwd~~~~~~--~~~~~-~------ 395 (713)
|..+..+. .+..+..|. ..++.+.|-. +.. .++.+...+.|....++.... ....+ .
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~-G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~ 330 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYR-GCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSC 330 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECC-CSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSS
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEe-CCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccc
Confidence 44443322 334444221 4678888854 221 244555557776666543321 11121 1
Q ss_pred --ccCCCeEEEEEcCCCcEEEEeC-------CcEEEEecCCCC
Q 005123 396 --VHDNTVWDLAWHPIGYLLCSND-------HTTKFWCRNRPG 429 (713)
Q Consensus 396 --~h~~~V~~l~~spdg~~laS~D-------g~v~iWd~~~~~ 429 (713)
.....+.++...+||.+.++.| ..-+||.+..+.
T Consensus 331 ~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~p~ 373 (463)
T 2wg3_C 331 RGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPK 373 (463)
T ss_dssp CSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEECTT
T ss_pred cccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecCcc
Confidence 1135789999999997776644 567899886443
No 341
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.03 E-value=0.042 Score=59.15 Aligned_cols=141 Identities=13% Similarity=0.153 Sum_probs=91.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeccC----CCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe-----------
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAH----KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ----------- 261 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~----~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~----------- 261 (713)
++..|+++- ++.||.-++......+.+... -..|..+..+++|++||..+ +.+|.|..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444443 356666665533322222221 23678899999999999886 4588888875221
Q ss_pred -eEEEEcc------CCCceEEEEEcC---CCCEEEEEeCCCcEEEEECCCCce-EEEEc---------cCCCCeEEEEEc
Q 005123 262 -EERSLTG------HGWDVKSVDWHP---TKSLLVSGGKDSLVKLWDAKSGRE-LCSFH---------GHKNMVLCVKWN 321 (713)
Q Consensus 262 -~~~~l~~------h~~~V~sl~~sp---dg~~L~sgs~Dg~I~IwDl~t~~~-~~~~~---------~h~~~I~si~fs 321 (713)
..+.+.- ....|..+.|+| .+..|++-..|+.|++||+..... ...++ .....|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 1122321 246799999999 456899999999999999985221 11222 223568999999
Q ss_pred CCCCEEEEEE--CCCeEEEE
Q 005123 322 QNGNWVLTAS--KDQIIKLY 339 (713)
Q Consensus 322 pdg~~Latgs--~Dg~I~Iw 339 (713)
.++-.|++.+ ++|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887777765 77777653
No 342
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=97.02 E-value=0.27 Score=51.02 Aligned_cols=187 Identities=8% Similarity=0.080 Sum_probs=115.6
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCceE-------EEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC---C----
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFNFE-------MILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM---N---- 218 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~~~-------~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~---~---- 218 (713)
++..++++.+.+|.|+-..+...+.. ..+. ...+.+..+......+.++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 45668899999999998875543211 1111 1234455555555667788888889887776431 1
Q ss_pred --ce---eeeeccCCCCeeEEEEec---CCCEEEEEECCCeEEEEEcCC-------CeeEEEEccCCCceEEEEEcCCCC
Q 005123 219 --NV---KANKSAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFAR-------CQEERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 219 --~~---~~~~~~~~~~V~~l~fs~---dg~~Las~s~Dg~I~iwDl~~-------~~~~~~l~~h~~~V~sl~~spdg~ 283 (713)
.. ...+ ...+.|.++.... ++.+|+..+.+|.++...+.. +.....+.. .+.+..+....++.
T Consensus 86 ~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 10 0111 1234565554443 467889999999999998743 222223333 45666666655566
Q ss_pred EEEEEeCCCcEEEEECCC---------CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 284 LLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t---------~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
.|+..+.+|.+..+++.. |.....+. ....|.++....++..|++.+.+|.++..++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 788889999999987753 11122222 244566666555667788999999999998753
No 343
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.92 E-value=0.07 Score=57.46 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=96.3
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccC----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------
Q 005123 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH----GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR------- 303 (713)
Q Consensus 235 ~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~------- 303 (713)
..+.++..++.+- ++.||.-++......+.++.. ...|..+..+++|++||..+. ..|.|..+-.+.
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 3445666666554 467887777644444444432 236888999999999998865 678888876321
Q ss_pred -----eEEEEcc------CCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCe--eE--------EEeecCCCCeEE
Q 005123 304 -----ELCSFHG------HKNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRAMK--EL--------ESFRGHRKDVTA 359 (713)
Q Consensus 304 -----~~~~~~~------h~~~I~si~fsp---dg~~Latgs~Dg~I~IwDl~t~~--~l--------~~~~~h~~~V~s 359 (713)
..+.+.- ....|..+.|+| .+..|++-..|+.|++||+.... .. ..+......|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 1122321 246799999999 46789999999999999998521 11 111223367999
Q ss_pred EEEeCCCCCEEEEEE--CCCcEEEE
Q 005123 360 LAWHPFHEEYFVSGS--LDGSIFHW 382 (713)
Q Consensus 360 l~fsp~~~~~lasgs--~DG~I~Iw 382 (713)
++|.. ++-.|...+ .+|.|+-.
T Consensus 185 ~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECT-TSSCEEEEECTTSCEEEEE
T ss_pred EEEcC-CCcEEEEEecCCCCCEEEE
Confidence 99998 565555544 77888653
No 344
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=96.87 E-value=0.69 Score=49.87 Aligned_cols=235 Identities=11% Similarity=-0.042 Sum_probs=130.7
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc------------eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~------------~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~i 254 (713)
..|..|+. -+.+.+.-..||.|..|-.+... ...........|..|+. -....++...||.|+.
T Consensus 75 ~~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~--G~~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 75 PDAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISA--GDSHSACLLEDGRVFA 150 (423)
T ss_dssp SSEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred CCceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEc--CcCeEEEEeCCCeEEE
Confidence 34666655 35667777889999999643211 00111112345665555 3445566678999999
Q ss_pred EEc--CC-Ce---------eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c------------------
Q 005123 255 WDF--AR-CQ---------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-R------------------ 303 (713)
Q Consensus 255 wDl--~~-~~---------~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~------------------ 303 (713)
|-. .. ++ ...........|..|+.. ..+.++-..||.|+.|-.... +
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 975 22 11 111111233457777765 445666678999999954321 0
Q ss_pred ---eEEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------eeEEEeecCCCCeEEEEEeCCCCC
Q 005123 304 ---ELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-----------KELESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 304 ---~~~~~-~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~-----------~~l~~~~~h~~~V~sl~fsp~~~~ 368 (713)
....+ ......|..|+... ...++.-+.|+.|+.|-.... ....-.......|..|+. +..
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~---G~~ 304 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG---GQH 304 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE---CSS
T ss_pred cccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc---ccC
Confidence 01111 11223455555432 122333357888999864421 111111112346777765 556
Q ss_pred EEEEEECCCcEEEEEcCCCC--------c---eEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCCc
Q 005123 369 YFVSGSLDGSIFHWLVGHET--------P---QVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~--------~---~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~~ 431 (713)
..+....||.|+.|=.+... . .......-...|..|+......++.+.|+.|..|=.+..+..
T Consensus 305 ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqL 378 (423)
T 3mvd_K 305 HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQL 378 (423)
T ss_dssp EEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCTTSCS
T ss_pred eEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCCCCCC
Confidence 77777889999999653211 1 111222222368888877776667789999999987766543
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.85 E-value=0.0074 Score=63.68 Aligned_cols=188 Identities=11% Similarity=0.090 Sum_probs=93.7
Q ss_pred CCCEEEEEEC-C---------CcEEEEeCCCCceEEEEecc---CCCEEEEEEccCCCEEEEEeCC--------------
Q 005123 155 TGRRLITGSQ-S---------GEFTLWNGQSFNFEMILQAH---DHAIRSMVWSHNDNWMVSGDDG-------------- 207 (713)
Q Consensus 155 dg~~Latgs~-d---------g~V~Iwd~~t~~~~~~l~~h---~~~V~sl~~spdg~~L~sgs~D-------------- 207 (713)
++++++.|+. + ..+.+||..+.+....-... .....++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 5666666665 2 46899998876544322111 11222233 467778888765
Q ss_pred -------------------------CcEEEEEcCCCceeeeeccCC-CCe-eEEEEecCCCEEEEEEC------CCeEEE
Q 005123 208 -------------------------GAIKYWQNNMNNVKANKSAHK-ESV-RDLSFCRTDLKFCSCSD------DTTVKV 254 (713)
Q Consensus 208 -------------------------G~I~vwdl~~~~~~~~~~~~~-~~V-~~l~fs~dg~~Las~s~------Dg~I~i 254 (713)
..+.+||..+.+-...-.... ... .+++.. +++.++.|+. ...+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 221 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFE 221 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEE
Confidence 468889988765333211111 111 233332 5556666543 345777
Q ss_pred EEc--CCCeeEE--EEccCCC--ceEEEEEcCCCCEEEEEeCC----------------------CcEEEEECCCCc--e
Q 005123 255 WDF--ARCQEER--SLTGHGW--DVKSVDWHPTKSLLVSGGKD----------------------SLVKLWDAKSGR--E 304 (713)
Q Consensus 255 wDl--~~~~~~~--~l~~h~~--~V~sl~~spdg~~L~sgs~D----------------------g~I~IwDl~t~~--~ 304 (713)
||+ .+.+-.. .+..... ...++.+ ++++++.|+.+ ..+.+||+++.+ .
T Consensus 222 ~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~ 299 (357)
T 2uvk_A 222 LDFTGNNLKWNKLAPVSSPDGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK 299 (357)
T ss_dssp EECC---CEEEECCCSSTTTCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE
T ss_pred EEecCCCCcEEecCCCCCCcccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee
Confidence 877 3332211 1111111 1112332 46677777632 247889988654 3
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCC------eEEEEECCCCeeEEE
Q 005123 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ------IIKLYDIRAMKELES 349 (713)
Q Consensus 305 ~~~~~~h~~~I~si~fspdg~~Latgs~Dg------~I~IwDl~t~~~l~~ 349 (713)
+..+......-.++. -++++++.|+.++ .|.++++++.+.+..
T Consensus 300 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 300 SGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred CCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 333322222223333 3677888888553 466668877665543
No 346
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=96.80 E-value=0.17 Score=53.00 Aligned_cols=197 Identities=8% Similarity=0.032 Sum_probs=120.7
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEe---CCCC------ceEE---EEeccCCCEEEEEEcc---CCCEEEEEeCCC
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWN---GQSF------NFEM---ILQAHDHAIRSMVWSH---NDNWMVSGDDGG 208 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd---~~t~------~~~~---~l~~h~~~V~sl~~sp---dg~~L~sgs~DG 208 (713)
.+.+..+......+.|+.-+..|.++... +... ..+. .+. ....|.++.... +..++++.+.+|
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 44566666666677788888888876654 3221 1110 112 234555554433 478999999999
Q ss_pred cEEEEEcCCCc-------eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC--CC---------eeEEEEccCC
Q 005123 209 AIKYWQNNMNN-------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA--RC---------QEERSLTGHG 270 (713)
Q Consensus 209 ~I~vwdl~~~~-------~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~--~~---------~~~~~l~~h~ 270 (713)
.|+...+..-. ....+.. .+.+..+........|+..+.+|.+..+.+. .- .....+. ..
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~ 197 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-ID 197 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TT
T ss_pred EEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CC
Confidence 99998765421 1122222 4566666666677788999999999888776 21 1111222 34
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------ceEEE--EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-------RELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-------~~~~~--~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
..|.++....++..|+..+..|.++.-.+... +-+.. +......+..+....+...|+..+.+|.+..+++
T Consensus 198 d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 198 DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 56777777666778999999999998876432 11222 2222344555554445567777888888887876
Q ss_pred CC
Q 005123 342 RA 343 (713)
Q Consensus 342 ~t 343 (713)
..
T Consensus 278 ~~ 279 (327)
T 3uc1_A 278 RQ 279 (327)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.80 E-value=0.64 Score=49.49 Aligned_cols=211 Identities=11% Similarity=-0.011 Sum_probs=103.4
Q ss_pred CEEEEEECCCcEEEEeCCC-CceEEEE--eccCCCEEEEEEcc-CCCEEEEEeCCC----cEEEEEcCCCceeeeecc--
Q 005123 157 RRLITGSQSGEFTLWNGQS-FNFEMIL--QAHDHAIRSMVWSH-NDNWMVSGDDGG----AIKYWQNNMNNVKANKSA-- 226 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t-~~~~~~l--~~h~~~V~sl~~sp-dg~~L~sgs~DG----~I~vwdl~~~~~~~~~~~-- 226 (713)
..|++|+..| +.+++... ++.-..+ ......|.+|++.+ +...|+++...| .|... .+.++....+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccc
Confidence 4677888777 55554332 2222211 22356799999988 334444444444 33332 222222111110
Q ss_pred ------------CCCCeeEEEEec-C-CCEEEEEECCCeEEEEEcCCCeeEEEEcc-------------------CCCce
Q 005123 227 ------------HKESVRDLSFCR-T-DLKFCSCSDDTTVKVWDFARCQEERSLTG-------------------HGWDV 273 (713)
Q Consensus 227 ------------~~~~V~~l~fs~-d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~~-------------------h~~~V 273 (713)
....|.+|++.+ + ...|.++...+.|...+- .++.-..+.. ....|
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 112577888876 2 455666665665555432 2222112211 12357
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEcc-C------------CCCeEEEEEcCC-CCEEEEEECCCeEEE
Q 005123 274 KSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHG-H------------KNMVLCVKWNQN-GNWVLTASKDQIIKL 338 (713)
Q Consensus 274 ~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~-h------------~~~I~si~fspd-g~~Latgs~Dg~I~I 338 (713)
.+|.+++. ...|+++..++.|...+ +.++.-..+.. . ...+.+|.++++ ...|++++..+ |..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~ 257 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYR 257 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEE
Confidence 89999873 44555555445454442 22333222211 0 134889999885 46677776554 544
Q ss_pred EECCCCeeEEEeec--CC---CCeEEEEEeCCCCCEEEEE
Q 005123 339 YDIRAMKELESFRG--HR---KDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 339 wDl~t~~~l~~~~~--h~---~~V~sl~fsp~~~~~lasg 373 (713)
.+- .++....+.. .. ..+.++++++.+...|.++
T Consensus 258 s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 258 MDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred eCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 442 2333222221 11 3457788876444444444
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.78 E-value=0.24 Score=52.86 Aligned_cols=257 Identities=10% Similarity=0.024 Sum_probs=122.5
Q ss_pred CCceEEEEEcc-CCCEEEEEECCC----cEEEEeCCCCceEEEEec--------------cCCCEEEEEEccC--CCEEE
Q 005123 144 RCSINRVLWTP-TGRRLITGSQSG----EFTLWNGQSFNFEMILQA--------------HDHAIRSMVWSHN--DNWMV 202 (713)
Q Consensus 144 ~~~V~~v~~sp-dg~~Latgs~dg----~V~Iwd~~t~~~~~~l~~--------------h~~~V~sl~~spd--g~~L~ 202 (713)
...|.+|++.+ +...|++++..| .|...+- .++.-..+.. ....|.+|++.+. .+.|+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D-~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDD-GGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESS-TTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCC-CCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35699999998 334455555554 4544432 2221111111 1125778898862 45566
Q ss_pred EEeCCCcEEEEEcCCCceeeeec-------------------cCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCee
Q 005123 203 SGDDGGAIKYWQNNMNNVKANKS-------------------AHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQE 262 (713)
Q Consensus 203 sgs~DG~I~vwdl~~~~~~~~~~-------------------~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~ 262 (713)
++...+-|...+- .++....+. .....|.+|.+.+. ...|+++..++.|...+- .++.
T Consensus 133 ~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD 210 (394)
T ss_dssp EEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred EEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence 6655555544422 222211111 01235778888863 345555554444444321 2222
Q ss_pred EEEEcc-C------------CCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEcc--CC---CCeEEEEEcC-
Q 005123 263 ERSLTG-H------------GWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHG--HK---NMVLCVKWNQ- 322 (713)
Q Consensus 263 ~~~l~~-h------------~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~--h~---~~I~si~fsp- 322 (713)
-..+.. . ...+.+|.++++ ...|+++...+ |...+- .++.-..+.. .. ..+.++.+++
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCC
Confidence 122111 0 134889999985 46677776544 554442 2333332221 11 3456788876
Q ss_pred CCCEEEEEEC-----------CCeEEEEECCC-CeeEEEee-cCC--C-----CeEEEEEeCCCCCEEEEEECCCcEEEE
Q 005123 323 NGNWVLTASK-----------DQIIKLYDIRA-MKELESFR-GHR--K-----DVTALAWHPFHEEYFVSGSLDGSIFHW 382 (713)
Q Consensus 323 dg~~Latgs~-----------Dg~I~IwDl~t-~~~l~~~~-~h~--~-----~V~sl~fsp~~~~~lasgs~DG~I~Iw 382 (713)
+...|+++.. ++...||...+ ++....+. +.. . ....+++++.+...|+.++.++.|.+-
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S 368 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS 368 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 3344555432 23345555443 23222221 111 0 123578877555556666666665433
Q ss_pred EcCCCCceEEEecccCCCeEEEEEc
Q 005123 383 LVGHETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 383 d~~~~~~~~~~~~~h~~~V~~l~~s 407 (713)
.........+..+-..|.+|+|.
T Consensus 369 --~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 369 --ADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp --SSTTSBCEEEECSCSCEEEEEEE
T ss_pred --CCCCCCceEcccCCCCeeEEEEe
Confidence 23333333333334467777764
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.77 E-value=0.25 Score=54.76 Aligned_cols=225 Identities=9% Similarity=0.135 Sum_probs=133.9
Q ss_pred EEEEECCCcEEEEeCCCCceEEEEeccC-------------------------CCEE--EEEEc---cCCCEEEEEeC-C
Q 005123 159 LITGSQSGEFTLWNGQSFNFEMILQAHD-------------------------HAIR--SMVWS---HNDNWMVSGDD-G 207 (713)
Q Consensus 159 Latgs~dg~V~Iwd~~t~~~~~~l~~h~-------------------------~~V~--sl~~s---pdg~~L~sgs~-D 207 (713)
+.+|+.+|.|+|+-+-+.+.++.+...+ +... .+++. -||++|++-+. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5678889999999999988887764211 1111 22222 25678888774 4
Q ss_pred CcEEEEEcCCCceeeeecc-CCCCeeEEEEe--cCCCEEEEEEC-------CCeE------------EEEEcCCCeeEEE
Q 005123 208 GAIKYWQNNMNNVKANKSA-HKESVRDLSFC--RTDLKFCSCSD-------DTTV------------KVWDFARCQEERS 265 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~-~~~~V~~l~fs--~dg~~Las~s~-------Dg~I------------~iwDl~~~~~~~~ 265 (713)
..|...+++..++...+.. ....+.++.|- ++..|++++++ ||.. ...|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6788888888776555433 44577788876 57778777765 3321 1112222222111
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCCC---------------cEEEEEC-------------------------CC----
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKDS---------------LVKLWDA-------------------------KS---- 301 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~Dg---------------~I~IwDl-------------------------~t---- 301 (713)
+. -......+...+++++.++.+.+. .|.++|+ +.
T Consensus 233 v~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 11 112333455566777777776532 1455544 22
Q ss_pred CceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCee-------------EEEeecCCCCeEEEEEeCCCC
Q 005123 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE-------------LESFRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 302 ~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~-------------l~~~~~h~~~V~sl~fsp~~~ 367 (713)
+..+..+..-......+.++|||+++++++ .+.+|.|+|++.... +.... -.......+|.. ++
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G 389 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RG 389 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SS
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CC
Confidence 111111111122345688999999998776 577899999874221 12222 234567889998 66
Q ss_pred CEEEEEECCCcEEEEEcCC
Q 005123 368 EYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~ 386 (713)
+.+.+.-.|..|..|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEEETTTTEEEEEEHHH
T ss_pred ceEeeeeecceEEEEeccH
Confidence 6666777899999999954
No 350
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.76 E-value=0.085 Score=64.68 Aligned_cols=253 Identities=10% Similarity=0.112 Sum_probs=145.4
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEE
Q 005123 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~La 244 (713)
+..|.|.|+.+...+.+.. -...+...+|..+.|+.-. ..++.|+|+++...+....- ...|.-=.|..+.. |+
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VA 120 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eE
Confidence 3478888888765432211 1112334567777776554 68999999998877766543 45666667765444 33
Q ss_pred EEECCCeEEEEEcCCC-eeEEEEccC----CCceEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCceEEEEccCC
Q 005123 245 SCSDDTTVKVWDFARC-QEERSLTGH----GWDVKSVDWHPTKSLLVSGG-------KDSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 245 s~s~Dg~I~iwDl~~~-~~~~~l~~h----~~~V~sl~~spdg~~L~sgs-------~Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
..+ +..|+.|++... ...+.+..| ...|.....+++.++++..+ -.|.+.+|..+.+ ....+.+|.
T Consensus 121 lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha 198 (1630)
T 1xi4_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (1630)
T ss_pred EEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhH
Confidence 333 457999999642 333333333 45688888888999877654 3477889987643 334456666
Q ss_pred CCeEEEEEcC---CCCEEEEEEC---CCeEEEEECCCC---ee------EEEeec---CCCCeEEEEEeCCCCCEEEEEE
Q 005123 313 NMVLCVKWNQ---NGNWVLTASK---DQIIKLYDIRAM---KE------LESFRG---HRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 313 ~~I~si~fsp---dg~~Latgs~---Dg~I~IwDl~t~---~~------l~~~~~---h~~~V~sl~fsp~~~~~lasgs 374 (713)
.....+...- ....++.+.. .+.+.|.++... .. +..+-. -.+--.++..++ .-.++...+
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~it 277 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT 277 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEe
Confidence 5554444321 1223333322 268888888542 11 111111 123345666776 567788888
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC-CCcEEE-EeCCcEEEEecCC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLC-SNDHTTKFWCRNR 427 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la-S~Dg~v~iWd~~~ 427 (713)
.-|.|.++|+.++..+..-. .....|...+-+. .+-+++ ...|.|.--.++.
T Consensus 278 k~G~~~~~d~~t~~~i~~~r-is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 278 KYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred cCceEEEEecccchhhhhcc-ccCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 99999999999887554332 2233444333332 223332 3555555444443
No 351
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0066 Score=64.05 Aligned_cols=188 Identities=7% Similarity=0.035 Sum_probs=105.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeccCC-CCeeEEEE---ecCCCEEEEE-ECCCeEEEEEcCCCeeEEEEcc----
Q 005123 198 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDLSF---CRTDLKFCSC-SDDTTVKVWDFARCQEERSLTG---- 268 (713)
Q Consensus 198 g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~-~~V~~l~f---s~dg~~Las~-s~Dg~I~iwDl~~~~~~~~l~~---- 268 (713)
+.++++++.||.|.-+|.++++.+..+.... ..+....- ..++..++.. +.||.|..+|..++.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 3578899999999999999999888875541 12221110 0122333333 6899999999988765544331
Q ss_pred CCCceEE---EEE-----cCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCC-------CeEEEEEc-----CCCCEEE
Q 005123 269 HGWDVKS---VDW-----HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN-------MVLCVKWN-----QNGNWVL 328 (713)
Q Consensus 269 h~~~V~s---l~~-----spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~-------~I~si~fs-----pdg~~La 328 (713)
....+.. ..+ ...+..+++++.++++...|+++|+.+.++..... ...|.... -.+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1111221 001 01356789999999999999999999998864321 11122211 1245677
Q ss_pred EEECCCeEEEEECCCCeeEEEee-----cCCCC--eE-EEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 329 TASKDQIIKLYDIRAMKELESFR-----GHRKD--VT-ALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 329 tgs~Dg~I~IwDl~t~~~l~~~~-----~h~~~--V~-sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
.+..+..|.+.+ ++++ +..+. ..... +. .-..+. ++.+ +.++.||.|..+|..++..
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSK-DGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCS-SSCC-EEEETTTEEEEECSTTCCE
T ss_pred EecceEEEEEEC-CCCC-eEEEeccccccccccccccccccccc-CCcE-EEECCCCEEEEEECCCCcE
Confidence 777777777777 4453 22211 00000 00 000011 2344 4467888888888766654
No 352
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=96.72 E-value=0.82 Score=48.60 Aligned_cols=229 Identities=10% Similarity=0.005 Sum_probs=131.2
Q ss_pred EccCCCEEEEEECCCcEEEEeCCC---------CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC---C--
Q 005123 152 WTPTGRRLITGSQSGEFTLWNGQS---------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M-- 217 (713)
Q Consensus 152 ~spdg~~Latgs~dg~V~Iwd~~t---------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~---~-- 217 (713)
+-++..++++.+.+|.|+--.+.+ +.....++ ..+.+..+........|+..+..|.+.-+... .
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778999999999999865322 12222333 35566666666666778878888887766532 1
Q ss_pred ----Cceeeee--ccCCCCeeEEEEec---CCCEEEEEECCCeEEEEEcCC-------CeeEEEEccCCCceEEEEEcCC
Q 005123 218 ----NNVKANK--SAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFAR-------CQEERSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 218 ----~~~~~~~--~~~~~~V~~l~fs~---dg~~Las~s~Dg~I~iwDl~~-------~~~~~~l~~h~~~V~sl~~spd 281 (713)
+..+..+ -...+.|.++.... ++.+|+.++..|.++...+.. +.....+.. .+.+..+.....
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 1111111 12345666655442 456899999999999988643 222223332 345555555555
Q ss_pred CCEEEEEeCCCcEEEEECCCC---------ceEEEEccCCCCeEEEEEcC------------------------------
Q 005123 282 KSLLVSGGKDSLVKLWDAKSG---------RELCSFHGHKNMVLCVKWNQ------------------------------ 322 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~---------~~~~~~~~h~~~I~si~fsp------------------------------ 322 (713)
...|+..+.+|.+..|+...- .....+. ....|.++....
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 667888888899888875421 1111122 234455544433
Q ss_pred -----CCCEEEEEECCCeEEEEECCCCe-------eEEEee--cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 323 -----NGNWVLTASKDQIIKLYDIRAMK-------ELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 323 -----dg~~Latgs~Dg~I~IwDl~t~~-------~l~~~~--~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
++.+|++.+..|..+...+.... -+..++ ...+.+..+.+.. +...|+..+..|.+.-..+
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~-~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG-STDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEETTCCEEEEEG
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeC-CCceEEEEcCCCeEEEeeH
Confidence 44689999999999988875322 122222 2233455554443 3445555666666655554
No 353
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.71 E-value=0.058 Score=52.94 Aligned_cols=178 Identities=11% Similarity=0.058 Sum_probs=101.0
Q ss_pred CCEEEEEECCCeEEEEEcCCCe------eEEEEcc-CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE------E
Q 005123 240 DLKFCSCSDDTTVKVWDFARCQ------EERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL------C 306 (713)
Q Consensus 240 g~~Las~s~Dg~I~iwDl~~~~------~~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~------~ 306 (713)
+..|++..+| +|++=...++. ....+-. .-..+++++|+|++.+.++ .+|.|+-.+..+.... .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 4456666666 66554443332 1222221 1247889999999886666 6788777776552211 1
Q ss_pred EEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE------EEe-ecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 307 SFH--GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL------ESF-RGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 307 ~~~--~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l------~~~-~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
.+- +.+ ...++.|.++|.+.++ .||.|+-++-.+...- ..+ ..--..+..|.|.| ++.+.++. |+
T Consensus 81 ~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg 154 (236)
T 1tl2_A 81 KIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQ 154 (236)
T ss_dssp EEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TT
T ss_pred Eecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CC
Confidence 111 111 1478899999987777 5698888775331110 111 11124679999999 77777666 77
Q ss_pred cEEEEEcCCCC------ceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCC
Q 005123 378 SIFHWLVGHET------PQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRP 428 (713)
Q Consensus 378 ~I~Iwd~~~~~------~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~ 428 (713)
.++-+.--... ....+-...-.....+.|.+++.+.+..++ +||....+
T Consensus 155 ~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~~g--~~Y~~~~p 209 (236)
T 1tl2_A 155 QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQGG--KFYEDYPP 209 (236)
T ss_dssp EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEETT--EEEEESCC
T ss_pred cEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEeCC--eEEecCCc
Confidence 75443322111 011111122234555779999988877766 66665443
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=96.60 E-value=0.22 Score=57.92 Aligned_cols=227 Identities=10% Similarity=0.064 Sum_probs=118.0
Q ss_pred EccCCCEEEEE-e----CCCcEEEEEcCCCceeee-ec-cCCC------CeeEEEEecCCCEEEEEEC-----------C
Q 005123 194 WSHNDNWMVSG-D----DGGAIKYWQNNMNNVKAN-KS-AHKE------SVRDLSFCRTDLKFCSCSD-----------D 249 (713)
Q Consensus 194 ~spdg~~L~sg-s----~DG~I~vwdl~~~~~~~~-~~-~~~~------~V~~l~fs~dg~~Las~s~-----------D 249 (713)
+++++++++.+ + +...|+++|+.+++.+.. +. ..+. ....++|. |++.++.+.. .
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCC
Confidence 78888877754 2 224699999999987642 11 0001 12445887 4444444321 2
Q ss_pred CeEEEEEcCCCe--eEEEEccCCCc-eEEEEEcCCCC-----EEEEEeCC---CcEEEEECCC--CceEEEEccCCCCeE
Q 005123 250 TTVKVWDFARCQ--EERSLTGHGWD-VKSVDWHPTKS-----LLVSGGKD---SLVKLWDAKS--GRELCSFHGHKNMVL 316 (713)
Q Consensus 250 g~I~iwDl~~~~--~~~~l~~h~~~-V~sl~~spdg~-----~L~sgs~D---g~I~IwDl~t--~~~~~~~~~h~~~I~ 316 (713)
.+|+.|.+-+.. -...+.+.... ..+...+.+++ .+++.+.+ ..+.+.|... ++ +..+..... .
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~--~ 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSD--A 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTT--C
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCc--c
Confidence 468999886542 23344433333 23455566665 24443322 4466777653 33 233322222 1
Q ss_pred EEEEcCCCCEEEEE----------ECCCeEEEEECCCCe-------eEEE-e-ecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 317 CVKWNQNGNWVLTA----------SKDQIIKLYDIRAMK-------ELES-F-RGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 317 si~fspdg~~Latg----------s~Dg~I~IwDl~t~~-------~l~~-~-~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
.+..+.++.+++.. ...+.|.+.|+.+.. .... + ......+..+.|.. +.++++...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~l~~~~~~~~ 370 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK--DRVFLATYDNV 370 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS--SCEEEEEEETT
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC--CEEEEEEEECC
Confidence 12334455555532 246779999987631 2222 2 22345677888875 47888888887
Q ss_pred c--EEEEEcCCCC-ceEE-EecccCCCeEEEEEcCCC-cEEE--E---eCCcEEEEecC
Q 005123 378 S--IFHWLVGHET-PQVE-IHNVHDNTVWDLAWHPIG-YLLC--S---NDHTTKFWCRN 426 (713)
Q Consensus 378 ~--I~Iwd~~~~~-~~~~-~~~~h~~~V~~l~~spdg-~~la--S---~Dg~v~iWd~~ 426 (713)
. |.++|+.++. .... +.....+.|..+.++.++ .+++ + .-..+..+++.
T Consensus 371 ~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 371 VAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 5 5666654442 1222 211113456666666665 3333 2 23455555543
No 355
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.59 E-value=0.055 Score=66.32 Aligned_cols=203 Identities=9% Similarity=0.103 Sum_probs=125.3
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeccC--
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAH-- 227 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-~~~~~~~~~-- 227 (713)
-.+|..+.||.=. ..++.|||+++...++.+.- ...|.-=.|..+ +.|+..+ +..|..|+++.. ..++.+..|
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence 3556666555443 67899999998887777665 345666777744 4444444 467999999753 222233222
Q ss_pred --CCCeeEEEEecCCCEEEEEE-------CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC---CCCEEEEEeC---CC
Q 005123 228 --KESVRDLSFCRTDLKFCSCS-------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP---TKSLLVSGGK---DS 292 (713)
Q Consensus 228 --~~~V~~l~fs~dg~~Las~s-------~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp---dg~~L~sgs~---Dg 292 (713)
...|.....+++.++++..+ -.|.+.+|.++.+ ....+.+|......+.+.. ...+++.+.. .+
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~ 226 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence 45677777888888876543 3578888987653 3344556655554444432 1223333322 26
Q ss_pred cEEEEECCCC---ceE------EEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE
Q 005123 293 LVKLWDAKSG---REL------CSFH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 358 (713)
Q Consensus 293 ~I~IwDl~t~---~~~------~~~~---~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~ 358 (713)
++.|.++... ... ..+- .....-.++..|+.-..++..+.-|.|.+||+.|+.++..-+.....|.
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF 304 (1630)
T 1xi4_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (1630)
T ss_pred eEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence 8999988542 111 0110 1133345677788777888999999999999999998865553333333
No 356
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=96.47 E-value=0.65 Score=47.27 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=116.9
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEE---cCCCceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCCe
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQ---NNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQ 261 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwd---l~~~~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~~ 261 (713)
+.+..+......++|+.-+.+|.++... +........+ ...+.|..+.. . ++.+++..+.+|.|+...+....
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 4455555444556666667777766433 3222111112 23566766654 4 56789999999999999875431
Q ss_pred ------eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceEEEEccCCCCeEEEEEcCCCCE
Q 005123 262 ------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNW 326 (713)
Q Consensus 262 ------~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t---------~~~~~~~~~h~~~I~si~fspdg~~ 326 (713)
....++ ..+.+..+....+...|+..+.+|.+..++... |.....+. ....|..+....++.+
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence 222233 345666666666667888899999988887532 11112232 2355666655566778
Q ss_pred EEEEECCCeEEEEECCC-------CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEE--EEcC
Q 005123 327 VLTASKDQIIKLYDIRA-------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH--WLVG 385 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t-------~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~I--wd~~ 385 (713)
|++.+..|.++..++.. ++-+..+ ...+.+..+.... ++..++..+.+|.+.. ++++
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHH
Confidence 99999999999988643 2223333 2334555554443 4556777788888877 7663
No 357
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=96.42 E-value=0.38 Score=49.04 Aligned_cols=195 Identities=10% Similarity=0.031 Sum_probs=118.3
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEe---CCCCceEEEEeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWN---GQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd---~~t~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
.+.|.++......++|+..+.+|.++--. +....... +......|..+.... ++.+++..+.+|.|+...+..-.
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 34566666666666788888888877543 22211111 222355666664422 56789999999999999865431
Q ss_pred ------eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCCceEEEEEcCCCCE
Q 005123 220 ------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 220 ------~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~~V~sl~~spdg~~ 284 (713)
....++ ..+.+..+....+...|+..+.+|.+..++... +.....+. ....|.++....++..
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence 111222 345666666666777899999999998887632 22222233 2355666665556678
Q ss_pred EEEEeCCCcEEEEECCC-------CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE--EECC
Q 005123 285 LVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL--YDIR 342 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t-------~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~I--wDl~ 342 (713)
|+..+..|.++..++.. ++-+..+ ...+.+..+....+...|+..+.+|.+.. +++.
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 88999999999887643 2223333 23344554444334456777777787777 7654
No 358
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.41 E-value=0.098 Score=60.80 Aligned_cols=192 Identities=8% Similarity=0.023 Sum_probs=105.1
Q ss_pred cCCCEEEEEECC----CcEEEEeCCCCceEEEE-e------cc-CCCEEEEEEccCCCEEEEEeCC------CcEEEEEc
Q 005123 154 PTGRRLITGSQS----GEFTLWNGQSFNFEMIL-Q------AH-DHAIRSMVWSHNDNWMVSGDDG------GAIKYWQN 215 (713)
Q Consensus 154 pdg~~Latgs~d----g~V~Iwd~~t~~~~~~l-~------~h-~~~V~sl~~spdg~~L~sgs~D------G~I~vwdl 215 (713)
-++..++.|+.+ ..+.+||..+.+....- . .. ...-.++.+..++++++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467777787753 46889998877655443 1 11 1122233332266777777654 35788888
Q ss_pred CCCceeeeeccCCCCe-eEEEEecCCCEEEEEECCC--eEEEEEcCCCeeEEEEc-----cCCCceEEEEEcCC-CCEEE
Q 005123 216 NMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSDDT--TVKVWDFARCQEERSLT-----GHGWDVKSVDWHPT-KSLLV 286 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V-~~l~fs~dg~~Las~s~Dg--~I~iwDl~~~~~~~~l~-----~h~~~V~sl~~spd-g~~L~ 286 (713)
.+.+-...-....... .+++...+++.++.|+.++ .+.+||..+.+-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8764332211111111 2222323777788777654 69999998765332211 11222334555554 66777
Q ss_pred EEeC--C-----CcEEEEECCCCce-----EEEEcc----CCCCeEEEEEcCCCCEEEEEEC--------CCeEEEEECC
Q 005123 287 SGGK--D-----SLVKLWDAKSGRE-----LCSFHG----HKNMVLCVKWNQNGNWVLTASK--------DQIIKLYDIR 342 (713)
Q Consensus 287 sgs~--D-----g~I~IwDl~t~~~-----~~~~~~----h~~~I~si~fspdg~~Latgs~--------Dg~I~IwDl~ 342 (713)
.|+. + ..|.+||+.+.+. -..+.. ......++ ...++++++.|+. ...|.+||+.
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 4588999987761 112211 11122223 3333677777774 3469999998
Q ss_pred CCee
Q 005123 343 AMKE 346 (713)
Q Consensus 343 t~~~ 346 (713)
+.+-
T Consensus 635 t~~W 638 (695)
T 2zwa_A 635 SETL 638 (695)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 7654
No 359
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=96.40 E-value=1.1 Score=46.36 Aligned_cols=186 Identities=11% Similarity=0.065 Sum_probs=115.6
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCcee-------eee-ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-------
Q 005123 196 HNDNWMVSGDDGGAIKYWQNNMNNVK-------ANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC------- 260 (713)
Q Consensus 196 pdg~~L~sgs~DG~I~vwdl~~~~~~-------~~~-~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~------- 260 (713)
++..++++.+.+|.|+-..+..-+.. ..+ ....+.+..+..+.....++..+..|.++-+....-
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 45678889999999998876433211 111 123355666666767778888899998887765321
Q ss_pred --ee---EEEEccCCCceEEEEEcC---CCCEEEEEeCCCcEEEEECCC-------CceEEEEccCCCCeEEEEEcCCCC
Q 005123 261 --QE---ERSLTGHGWDVKSVDWHP---TKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQNGN 325 (713)
Q Consensus 261 --~~---~~~l~~h~~~V~sl~~sp---dg~~L~sgs~Dg~I~IwDl~t-------~~~~~~~~~h~~~I~si~fspdg~ 325 (713)
.. ...+. ....|.++.... +..+|+..+.+|.++...+.. |.....+.. ...+..+....++.
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 11 11122 223455554332 466788899999999887743 222223333 45566666655567
Q ss_pred EEEEEECCCeEEEEECCCC---------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 326 WVLTASKDQIIKLYDIRAM---------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 326 ~Latgs~Dg~I~IwDl~t~---------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
.|+..+.+|.+..+++..- .....+. ....|.++.... ++..|++.+..|.++..++.
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECT-TCSEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEEC-CCCeEEEEECCCceEEEEHH
Confidence 8889999999999987531 1222233 234566666554 45678889999999999884
No 360
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=96.40 E-value=1.4 Score=47.33 Aligned_cols=273 Identities=11% Similarity=0.081 Sum_probs=148.8
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCC-----------ceEEEEec-cCCCEEEEEEccCCCEEEEEeCC-CcEEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSF-----------NFEMILQA-HDHAIRSMVWSHNDNWMVSGDDG-GAIKY 212 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~-----------~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~D-G~I~v 212 (713)
.|..|+.. ..+.++-..||.|+.|-.... .....+.. ....|..|+.. ..+.+.-..| +.|..
T Consensus 17 ~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 17 KVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEEE
T ss_pred ceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEEE
Confidence 45555443 445666677888888853321 01111221 23467777664 3344434444 58999
Q ss_pred EEcCCC---------ce-e-eeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC----------e-eEEEEcc-
Q 005123 213 WQNNMN---------NV-K-ANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC----------Q-EERSLTG- 268 (713)
Q Consensus 213 wdl~~~---------~~-~-~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~----------~-~~~~l~~- 268 (713)
|-.... .. . ..+. .....|..|+. -....++...||.|+.|-.... . ....+..
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~--G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 170 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC--GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 170 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE--ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEeccc
Confidence 954321 00 0 1111 12235666655 3455666678999999975431 1 1111221
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c---------e-EEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeE
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-R---------E-LCSFHG-HKNMVLCVKWNQNGNWVLTASKDQII 336 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~---------~-~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I 336 (713)
....|..|+.. ..+.++...||.|+.|-.... + . ...+.. ....|..|+. ...+.++.+.||.|
T Consensus 171 ~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~--G~~ht~~l~~~G~v 246 (406)
T 4d9s_A 171 EGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC--GWRHTISVSYSGAL 246 (406)
T ss_dssp TTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE--CSSEEEEEETTCCE
T ss_pred CCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE--CCCcEEEEcCCCCE
Confidence 12357777665 455666678999999964321 1 1 111111 1234655554 34566667789999
Q ss_pred EEEECCCCe-----------eEEEeec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc-----------eEEE
Q 005123 337 KLYDIRAMK-----------ELESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-----------QVEI 393 (713)
Q Consensus 337 ~IwDl~t~~-----------~l~~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~-----------~~~~ 393 (713)
+.|-....- ....+.. ....|..|+. +....++...||.|+.|=.+.... ...+
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~---G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 323 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG---GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEE
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe---cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEE
Confidence 999754211 1111211 2234666665 556667778899999997543211 1112
Q ss_pred ecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCCc
Q 005123 394 HNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 394 ~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~~ 431 (713)
.......|..|+.-....++.+.|+.|..|=.+..+..
T Consensus 324 ~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqL 361 (406)
T 4d9s_A 324 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQL 361 (406)
T ss_dssp CCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred eccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCcc
Confidence 11223467777776666666779999999987665543
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.38 E-value=0.59 Score=51.36 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=61.6
Q ss_pred CceEEEEEccCCC-EEEEEECCCcEEEEeCCCCc---eEEEEe---------ccCCCEEEEEEccC---CCEEEEE-eC-
Q 005123 145 CSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFN---FEMILQ---------AHDHAIRSMVWSHN---DNWMVSG-DD- 206 (713)
Q Consensus 145 ~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~~---~~~~l~---------~h~~~V~sl~~spd---g~~L~sg-s~- 206 (713)
..-+.|+|.+|++ +|+++...|.|++++..... .+..+. ........|+|+|+ +.+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4568899999996 57777889999999754321 122221 11456889999986 3344332 21
Q ss_pred -C----------CcEEEEEcCCC----------ceeeeec--cCCCCeeEEEEecCCCEEEEEECC
Q 005123 207 -G----------GAIKYWQNNMN----------NVKANKS--AHKESVRDLSFCRTDLKFCSCSDD 249 (713)
Q Consensus 207 -D----------G~I~vwdl~~~----------~~~~~~~--~~~~~V~~l~fs~dg~~Las~s~D 249 (713)
+ ..|.-|.+..+ +++..+. ........|+|.+|+.++++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13444555421 1222221 222346789999999877776553
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=96.36 E-value=1.2 Score=46.36 Aligned_cols=227 Identities=11% Similarity=0.043 Sum_probs=134.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCce-------EEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEE---cCCC------
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNF-------EMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ---NNMN------ 218 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~-------~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd---l~~~------ 218 (713)
...+++.+.+|.|+--.+.+.+. ...+. ...+.+..+........|+.-+..|.++... +...
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 34677888888888765332110 11111 1234565555555667777777778776554 3221
Q ss_pred ceeeee--ccCCCCeeEEEEec---CCCEEEEEECCCeEEEEEcCCC-------eeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 219 NVKANK--SAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 219 ~~~~~~--~~~~~~V~~l~fs~---dg~~Las~s~Dg~I~iwDl~~~-------~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
..+..+ ....+.|.++.... ++.+++.++.+|.|+...+... .....++. .+.+..+........|+
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 111111 12345666665444 4789999999999999887442 22223333 44566665555667788
Q ss_pred EEeCCCcEEEEECC--CCc---------eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-------eeEE
Q 005123 287 SGGKDSLVKLWDAK--SGR---------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-------KELE 348 (713)
Q Consensus 287 sgs~Dg~I~IwDl~--t~~---------~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~-------~~l~ 348 (713)
..+.+|.+..+.+. .-. ....+. ....|.++....++.+|++.+..|.++.-.+... +-+.
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 88899999888776 311 111222 3455777766666778999999999998876432 2222
Q ss_pred Eee--cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 349 SFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 349 ~~~--~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
.++ .-.+.+..+.... +...++..+.+|.+..+++.
T Consensus 241 ~~~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SSCCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGG
T ss_pred EEEecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehh
Confidence 232 2134455555544 45567777788888777763
No 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=96.34 E-value=1.4 Score=46.89 Aligned_cols=224 Identities=13% Similarity=0.160 Sum_probs=125.6
Q ss_pred CCEEEEEECCCcEEEEeCCCC--------c---eEEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc----
Q 005123 156 GRRLITGSQSGEFTLWNGQSF--------N---FEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---- 219 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~--------~---~~~~l~~-h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~---- 219 (713)
....++-..||.|+.|-.... + ....+.. ....+..++++....+.+.-..||.|..|-.....
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 445666677888888853221 1 1111221 23345666777667777778889999999543211
Q ss_pred -------eeeeecc-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC----------e-eEEEEcc-CCCceEEEEEc
Q 005123 220 -------VKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC----------Q-EERSLTG-HGWDVKSVDWH 279 (713)
Q Consensus 220 -------~~~~~~~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~----------~-~~~~l~~-h~~~V~sl~~s 279 (713)
....+.. ....|..|+. -....++...||.|+.|-.... . ....+.. ....|..|+..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 1111111 1224555554 4455666778999999975321 1 1111111 23457777765
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-c----------eEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSG-R----------ELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--- 344 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~-~----------~~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~--- 344 (713)
......++...|+.|+.|-.... + ....+.. ....|..|+.. ..+.++-..||.|+.|-....
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqL 297 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRL 297 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCC
Confidence 43456777788999999964321 1 1112221 12246666553 445666678999999975421
Q ss_pred --------eeEEEeec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 345 --------KELESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 345 --------~~l~~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
.....+.. ....|..|+. +....++...||.|+.|=.+.
T Consensus 298 G~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 298 GHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTCCEEEEECCT
T ss_pred CCCCCccccCCeEeccCCCCCEEEEEe---ccCeEEEECCCCCEEEeeCCC
Confidence 01111221 2245777765 456667778999999997654
No 364
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.32 E-value=0.18 Score=49.48 Aligned_cols=141 Identities=8% Similarity=-0.040 Sum_probs=80.9
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCC--------eeEEEEecCCCEEEEEECCCeEEEEEcC
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES--------VRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~--------V~~l~fs~dg~~Las~s~Dg~I~iwDl~ 258 (713)
..+++++|+|++.+.++ .+|.+.-.+..+.....-+ ..... -.++.|.+++.+.++ .||.|+-++--
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~-~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWM-GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH-HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccc-ccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46779999999887766 5677666555442211111 11122 478899999988777 56888888753
Q ss_pred CCee-------EEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eEEEEc-cCCCCeEEEEEcCCC
Q 005123 259 RCQE-------ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR------ELCSFH-GHKNMVLCVKWNQNG 324 (713)
Q Consensus 259 ~~~~-------~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~------~~~~~~-~h~~~I~si~fspdg 324 (713)
+... ...-..-=..+..|.+.|+|.+.++. |+.++-+..-+.. ....+. ..-.....+.|.+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 2111 11111122468999999999877766 7775433222111 011111 222234456688888
Q ss_pred CEEEEEECCCeE
Q 005123 325 NWVLTASKDQII 336 (713)
Q Consensus 325 ~~Latgs~Dg~I 336 (713)
.++++. ++.|
T Consensus 194 ~l~~v~--~g~~ 203 (236)
T 1tl2_A 194 TLFGVQ--GGKF 203 (236)
T ss_dssp CEEEEE--TTEE
T ss_pred cEEEEe--CCeE
Confidence 766655 6633
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=96.29 E-value=1.3 Score=45.81 Aligned_cols=227 Identities=11% Similarity=0.033 Sum_probs=129.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEE---------EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC---C-----
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEM---------ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M----- 217 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~---------~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~---~----- 217 (713)
+..++++.+.+|.|+--.+.+.+... .+. ..+.+..+......+.|+..+..|.+.-+... .
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45678899999999887766543221 122 23445455555566777777788887666532 2
Q ss_pred -Cceee-ee-ccCCCCeeEEEEe---cCCCEEEEEECCCeEEEEEcCC-------CeeEEEEccCCCceEEEEEcCCCCE
Q 005123 218 -NNVKA-NK-SAHKESVRDLSFC---RTDLKFCSCSDDTTVKVWDFAR-------CQEERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 218 -~~~~~-~~-~~~~~~V~~l~fs---~dg~~Las~s~Dg~I~iwDl~~-------~~~~~~l~~h~~~V~sl~~spdg~~ 284 (713)
+..+. .+ -...+.|.++... .++.+++..+.+|.++...+.. +.....+... +.+..+....+...
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 11111 11 1234456666443 3566799999999999997742 2222223333 55656555555567
Q ss_pred EEEEeCCCcEEEEECCCC---------ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-------eEE
Q 005123 285 LVSGGKDSLVKLWDAKSG---------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-------ELE 348 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~---------~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-------~l~ 348 (713)
|+..+.+|.+..++...- .....+. ....|.++....++..|++.+..|.++-.++.... -+.
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 888888999888876431 1111222 34456666655556778999999999988874211 122
Q ss_pred E--eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 349 S--FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 349 ~--~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
. +..-.+.+..+.... +...|+..+.+|.+.-+++.
T Consensus 239 ~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp SSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGG
T ss_pred eeEecCCCCeEEEEEEeC-CCceEEEEcCCCcEEEEecc
Confidence 2 222234555554444 34556667777777766664
No 366
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=96.21 E-value=0.88 Score=47.39 Aligned_cols=228 Identities=10% Similarity=0.081 Sum_probs=129.6
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCc----eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC---C------Cce
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M------NNV 220 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~----~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~---~------~~~ 220 (713)
++..++++.+.+|.|+--.+.+.+ ....+. ..+.+..+......+.|+..+..|.+.-+... . +..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 456678899999999877543211 111122 23445555555566777777888887666532 1 111
Q ss_pred eee-e-ccCCCCeeEEEEecC---CCEEEEEECCCeEEEEEcCC--------CeeEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 221 KAN-K-SAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFAR--------CQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 221 ~~~-~-~~~~~~V~~l~fs~d---g~~Las~s~Dg~I~iwDl~~--------~~~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
+.. + -...+.|.++....+ +.+|+.++.+|.++...+.. +.....+.. .+.+..+........|+.
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEE
Confidence 111 1 112345665544332 56899999999999998742 222222332 255666655555667888
Q ss_pred EeCCCcEEEEECCCC----c---eEE--EEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC-------eeEEEe
Q 005123 288 GGKDSLVKLWDAKSG----R---ELC--SFHGHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAM-------KELESF 350 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~----~---~~~--~~~~h~~~I~si~fspdg~-~Latgs~Dg~I~IwDl~t~-------~~l~~~ 350 (713)
.+.+|.+..++...- + -++ .+. ....|.++....++. .|++.+..|..+..++... +-+..+
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 889999888876431 1 111 222 234566665444445 7888899999888877531 212222
Q ss_pred e---cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 351 R---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 351 ~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
+ .....+..+.... ++..++..+.+|.+..++++
T Consensus 240 ~~~~~~~~~l~~~~~v~-~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CCCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGG
T ss_pred eecCCCCceEEEEEEeC-CCCeEEEEeCCCeEEEEEhh
Confidence 2 2222454333332 34556677777777666653
No 367
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=95.93 E-value=0.58 Score=54.30 Aligned_cols=234 Identities=10% Similarity=0.079 Sum_probs=124.7
Q ss_pred eEEEE-EccCCCEEEEEEC-----CCcEEEEeCCCCceEEE-Ee-ccCC------CEEEEEEccCCCEEEEEe-------
Q 005123 147 INRVL-WTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMI-LQ-AHDH------AIRSMVWSHNDNWMVSGD------- 205 (713)
Q Consensus 147 V~~v~-~spdg~~Latgs~-----dg~V~Iwd~~t~~~~~~-l~-~h~~------~V~sl~~spdg~~L~sgs------- 205 (713)
...+. +++|+++++.+-+ -..|+++|+.+++.+.. +. ..+. ....++|. |++.++.+.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCc
Confidence 44455 8899988876532 24689999999876531 11 0000 11345887 444444432
Q ss_pred ----CCCcEEEEEcCCCc--eeeeeccCCCCe-eEEEEecCCCE-----EEEEEC---CCeEEEEEcCC--CeeEEEEcc
Q 005123 206 ----DGGAIKYWQNNMNN--VKANKSAHKESV-RDLSFCRTDLK-----FCSCSD---DTTVKVWDFAR--CQEERSLTG 268 (713)
Q Consensus 206 ----~DG~I~vwdl~~~~--~~~~~~~~~~~V-~~l~fs~dg~~-----Las~s~---Dg~I~iwDl~~--~~~~~~l~~ 268 (713)
....|+.|.+-+.. -...+......+ .+...+.++.+ +++.+. ...+.+.|... ++ ...+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeec
Confidence 12468888876542 222233322332 34445566652 444332 24566667653 33 222322
Q ss_pred CCCceEEEEEcCCCCEEEEE----------eCCCcEEEEECCCC-------ceEEE-E-ccCCCCeEEEEEcCCCCEEEE
Q 005123 269 HGWDVKSVDWHPTKSLLVSG----------GKDSLVKLWDAKSG-------RELCS-F-HGHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sg----------s~Dg~I~IwDl~t~-------~~~~~-~-~~h~~~I~si~fspdg~~Lat 329 (713)
... . .+..+.++.+++.. ...+.|.+.|+.+. +.... + ......+..+.|..+ .++++
T Consensus 289 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSD-A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTT-C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCc-c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 221 1 12233345444432 24567999998763 12222 3 223456778888865 56667
Q ss_pred EECCCe--EEEEECCCCe-eEEE-eecC-CCCeEEEEEeCCCCCEEEEEECC---CcEEEEEcC
Q 005123 330 ASKDQI--IKLYDIRAMK-ELES-FRGH-RKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVG 385 (713)
Q Consensus 330 gs~Dg~--I~IwDl~t~~-~l~~-~~~h-~~~V~sl~fsp~~~~~lasgs~D---G~I~Iwd~~ 385 (713)
...++. |+++|+.+++ .+.. +... ...|..+.++.+++.++++.+.. +.+..+|+.
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 777764 6777776664 2333 3222 24566666666556677766553 467777775
No 368
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.83 E-value=0.81 Score=50.81 Aligned_cols=226 Identities=10% Similarity=0.076 Sum_probs=129.9
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeccC-------------------------CCC--eeEEEEe---cCCCEEEEEEC-C
Q 005123 201 MVSGDDGGAIKYWQNNMNNVKANKSAH-------------------------KES--VRDLSFC---RTDLKFCSCSD-D 249 (713)
Q Consensus 201 L~sgs~DG~I~vwdl~~~~~~~~~~~~-------------------------~~~--V~~l~fs---~dg~~Las~s~-D 249 (713)
|.+|+..|.|+|+-+-+++.+..+... .+. -..+++. -||++|++-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 457888899999988887766654210 011 1234443 26777877764 6
Q ss_pred CeEEEEEcCCCeeEEEEcc-CCCceEEEEEc--CCCCEEEEEeC-------CCcE---------EE---EECCCCceEEE
Q 005123 250 TTVKVWDFARCQEERSLTG-HGWDVKSVDWH--PTKSLLVSGGK-------DSLV---------KL---WDAKSGRELCS 307 (713)
Q Consensus 250 g~I~iwDl~~~~~~~~l~~-h~~~V~sl~~s--pdg~~L~sgs~-------Dg~I---------~I---wDl~t~~~~~~ 307 (713)
..|-..+++..++...+.. ....+..+.|- |+-.+++++++ ||.. .+ .|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6788889988877655542 44678888886 57778888875 2221 11 12222222221
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECCC---------------eEEEEECCC-------Ce-------eEEEeecC-----
Q 005123 308 FHGHKNMVLCVKWNQNGNWVLTASKDQ---------------IIKLYDIRA-------MK-------ELESFRGH----- 353 (713)
Q Consensus 308 ~~~h~~~I~si~fspdg~~Latgs~Dg---------------~I~IwDl~t-------~~-------~l~~~~~h----- 353 (713)
+.- ......+....+++|.++.+.+. .|.++|++. ++ -+..+.+.
T Consensus 233 v~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 110 12233345566778877766432 355555421 10 11122211
Q ss_pred ----------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC-----------ceEEEecccCCCeEEEEEcCCCcE
Q 005123 354 ----------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET-----------PQVEIHNVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 354 ----------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~-----------~~~~~~~~h~~~V~~l~~spdg~~ 412 (713)
......+.++|++..+++++-.+.+|.|+|+++-. ..+.....-.-.-...+|+++|..
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNA 391 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCce
Confidence 12345678899444444555568899999996421 111111112345678899999966
Q ss_pred EEE--eCCcEEEEecCC
Q 005123 413 LCS--NDHTTKFWCRNR 427 (713)
Q Consensus 413 laS--~Dg~v~iWd~~~ 427 (713)
..+ .|..|..|+++.
T Consensus 392 YTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEETTTTEEEEEEHHH
T ss_pred EeeeeecceEEEEeccH
Confidence 666 899999999865
No 369
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=95.57 E-value=3.1 Score=44.49 Aligned_cols=235 Identities=10% Similarity=0.101 Sum_probs=128.9
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-----------eeeeec-cCCCCeeEEEEecCCCEEEEEECC-CeE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----------VKANKS-AHKESVRDLSFCRTDLKFCSCSDD-TTV 252 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~-----------~~~~~~-~~~~~V~~l~fs~dg~~Las~s~D-g~I 252 (713)
...|..|+. -..+.++-..||.|..|=..... ....+. .....|..++.. ....++...| +.|
T Consensus 15 ~~~v~~ia~--G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v 90 (406)
T 4d9s_A 15 PRKVLIISA--GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEV 90 (406)
T ss_dssp CCCEEEEEE--CSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEE
T ss_pred ccceEEEec--CCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEE
Confidence 345555554 34455556678888888543210 111111 122356666653 3344444455 599
Q ss_pred EEEEcCCC---------ee--EEEEcc-CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c----------eEEEEc
Q 005123 253 KVWDFARC---------QE--ERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-R----------ELCSFH 309 (713)
Q Consensus 253 ~iwDl~~~---------~~--~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~----------~~~~~~ 309 (713)
+.|-.... .. ...+.. ....|..|+.. ..+.++...||.|+.|-.... + ....+.
T Consensus 91 ~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 91 YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99964321 01 111111 22367777765 455666678999999965431 1 111122
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----------ee-EEEeec-CCCCeEEEEEeCCCCCEEEEEECC
Q 005123 310 G-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----------KE-LESFRG-HRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 310 ~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~----------~~-l~~~~~-h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
. ....|..|+. ...+.++...||.|+.|-.... .. ...+.. ....|..|+. +....++...|
T Consensus 169 ~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~---G~~ht~~l~~~ 243 (406)
T 4d9s_A 169 AFEGIRIKMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC---GWRHTISVSYS 243 (406)
T ss_dssp GGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE---CSSEEEEEETT
T ss_pred ccCCCcEEEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE---CCCcEEEEcCC
Confidence 1 1224666655 4456777788999999964321 11 111111 2245667665 55667777899
Q ss_pred CcEEEEEcCCCCce-----------EEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCCc
Q 005123 377 GSIFHWLVGHETPQ-----------VEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 377 G~I~Iwd~~~~~~~-----------~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~~ 431 (713)
|.|+.|-.+....+ ..+.......|..|+--.+..++.+.|+.|..|=.+..+..
T Consensus 244 G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqL 309 (406)
T 4d9s_A 244 GALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQV 309 (406)
T ss_dssp CCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred CCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCC
Confidence 99999975432111 11111123457777776666666679999999988776553
No 370
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=95.43 E-value=3.5 Score=44.13 Aligned_cols=232 Identities=11% Similarity=0.001 Sum_probs=130.0
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce------------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV------------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~------------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~ 253 (713)
...|..|+.. ..+.+.-..||.|..|-.+.... .-........|..|+. -....++-+.||.|+
T Consensus 58 ~~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~--G~~hs~alt~~G~v~ 133 (413)
T 1a12_A 58 PEDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA--GDSHTAALTDDGRVF 133 (413)
T ss_dssp SSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred CCCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEec--CCCeEEEEcCCCcEE
Confidence 3566666653 45566667889999996543110 0000112335665555 344566667899999
Q ss_pred EEEc--CCC-e----------e-EEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ce--------------
Q 005123 254 VWDF--ARC-Q----------E-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RE-------------- 304 (713)
Q Consensus 254 iwDl--~~~-~----------~-~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~~-------------- 304 (713)
.|-. ... + . ...+ .....|..|+.- ....++-+.||.|+.|-.... ++
T Consensus 134 ~wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 210 (413)
T 1a12_A 134 LWGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASG--NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 210 (413)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGG
T ss_pred EeeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEec--CceEEEEcCCCCEEEeeCCCCCccCCCccccccccccc
Confidence 9974 211 1 0 1111 233467777765 445666678999999965431 10
Q ss_pred -------EEEEcc------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----------eEEEeecC---CCCe
Q 005123 305 -------LCSFHG------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-----------ELESFRGH---RKDV 357 (713)
Q Consensus 305 -------~~~~~~------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-----------~l~~~~~h---~~~V 357 (713)
...+.. ....|..|+.. ..+.++...||.|+.|-....- .-..+... ...|
T Consensus 211 ~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v 288 (413)
T 1a12_A 211 GLERLLVPKCVMLKSRGSRGHVRFQDAFCG--AYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSW 288 (413)
T ss_dssp GHHHHHSCEECCCBCSSCCSBCCEEEEEEE--TTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCE
T ss_pred cccccccCceEeeccccccCCccEEEEEeC--CCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceE
Confidence 001111 12346666553 3455666789999999764311 11111111 1347
Q ss_pred EEEEEeCCCCCEEEEEECCCcEEEEEcCCC---------Cce--EEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecC
Q 005123 358 TALAWHPFHEEYFVSGSLDGSIFHWLVGHE---------TPQ--VEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426 (713)
Q Consensus 358 ~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~---------~~~--~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~ 426 (713)
..|+. +....++...||.|+.|-.... ... -..+. ....|..|+.-.+..++.+.|+.|..|=.+
T Consensus 289 ~~ia~---G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~-~l~~v~~v~~G~~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 289 VGFSG---GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPAVSSVACGASVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp EEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC-SSSSEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred EEEec---ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEec-ccCceeEEEECcceEEEEeCCCCEEEecCC
Confidence 77665 4566677778999999965321 111 11111 123677777766666666799999999877
Q ss_pred CCCC
Q 005123 427 RPGD 430 (713)
Q Consensus 427 ~~~~ 430 (713)
..+.
T Consensus 365 ~~gq 368 (413)
T 1a12_A 365 TNYQ 368 (413)
T ss_dssp TTST
T ss_pred CCCC
Confidence 6554
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=95.36 E-value=2.4 Score=43.74 Aligned_cols=196 Identities=10% Similarity=0.009 Sum_probs=114.8
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCC---C------CceEE---EEeccCCCEEEEEEc---cCCCEEEEEeCCCc
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQ---S------FNFEM---ILQAHDHAIRSMVWS---HNDNWMVSGDDGGA 209 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~---t------~~~~~---~l~~h~~~V~sl~~s---pdg~~L~sgs~DG~ 209 (713)
+.+..+......+.|+..+..|.++-+... . +..+. .+. ....|.++... .++.+|+..+.+|.
T Consensus 42 D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 120 (307)
T 1zi0_A 42 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGT 120 (307)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCe
Confidence 445555556666778888888887766532 2 11110 122 23456555432 35568999999999
Q ss_pred EEEEEcCCC-------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCCce
Q 005123 210 IKYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDV 273 (713)
Q Consensus 210 I~vwdl~~~-------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~~V 273 (713)
++...+..- .....+... +.+..+....+...|+..+.+|.+..++... +.....+. ....|
T Consensus 121 ~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~V 198 (307)
T 1zi0_A 121 VKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKV 198 (307)
T ss_dssp EEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCE
T ss_pred EEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEE
Confidence 999876421 111222333 5666666666667788889999988887632 11112222 34567
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~---------~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
.++....++..|++.+..|.++-.++.... ....+....+.+..+....+...|+..+.+|.+.-+++..
T Consensus 199 v~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 199 VSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 777655556678888999999888763211 1112222234555544434445566667777766666543
No 372
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=95.30 E-value=3.9 Score=43.88 Aligned_cols=229 Identities=7% Similarity=0.024 Sum_probs=123.1
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCC------------ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSF------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~------------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
.|..|+. -+.+.++-..||.|+.|-.... ...-........|..|+.. ..+.++-..||.|..|
T Consensus 76 ~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G--~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 76 DAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG--DSHSACLLEDGRVFAW 151 (423)
T ss_dssp SEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred CceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcC--cCeEEEEeCCCeEEEE
Confidence 3555544 3556777788999999954321 0111111123456666653 3555666788999999
Q ss_pred Ec--CC-Cce---------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC---------------------
Q 005123 214 QN--NM-NNV---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC--------------------- 260 (713)
Q Consensus 214 dl--~~-~~~---------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~--------------------- 260 (713)
-. +. +.+ ..........|..|+. -....++-..||.|+.|-....
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 229 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence 75 22 111 1111122345666655 3445666678999999964321
Q ss_pred --eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------ceEEEEccCCCCeEEEEEcCCCCEE
Q 005123 261 --QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-----------RELCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 261 --~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-----------~~~~~~~~h~~~I~si~fspdg~~L 327 (713)
............|..|+... ...++.-..|+.|+.|-.... ............|..|+. ...+.
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht 306 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHT 306 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEE
T ss_pred ccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeE
Confidence 01111111223466666542 223333357899999954321 111111111345666654 34566
Q ss_pred EEEECCCeEEEEECCCC------------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 328 LTASKDQIIKLYDIRAM------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 328 atgs~Dg~I~IwDl~t~------------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
++-..||.|+.|-.... .....+......|..|+.. ....++...||.|+.|=.+.
T Consensus 307 ~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G---~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 307 VILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCG---EVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEE---TTEEEEEETTSCEEEEECCT
T ss_pred EEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcC---CCeEEEEcCCCCEEEECCCC
Confidence 67778999999965321 1122223233367777764 45555668999999997644
No 373
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=95.24 E-value=4.5 Score=44.25 Aligned_cols=191 Identities=12% Similarity=0.074 Sum_probs=107.6
Q ss_pred CCeeEEEEecCCCEEEEEECCCeEEEEEcC---CCe-----------e-EEEEcc-CCCceEEEEEcCCCCEEEEEeCCC
Q 005123 229 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQ-----------E-ERSLTG-HGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~---~~~-----------~-~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
..|..|+. .....++...||.|+.|-.. .++ . -..+.. ....|..|+.. ....++...+|
T Consensus 148 ~~i~~va~--G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G 223 (473)
T 3of7_A 148 HKVVQLAA--TDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEG 223 (473)
T ss_dssp CCEEEEEE--CSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CcEEEEEc--cCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCC
Confidence 45555555 34455666789999999741 111 0 111111 12247777765 45666667899
Q ss_pred cEEEEECCCC-ce--------------EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC------------e
Q 005123 293 LVKLWDAKSG-RE--------------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------------K 345 (713)
Q Consensus 293 ~I~IwDl~t~-~~--------------~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~------------~ 345 (713)
.|+.|-.... +. ...+ ....|..|+. ...+.++.+.+|.|+.|-.... .
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~--G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~ 299 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIAS--GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGA 299 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEE--CSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTC
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceec--CCcceEEEec--CCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCc
Confidence 9999965431 10 0111 1134666654 3456667778999999965321 1
Q ss_pred eE---EEeec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce---------------------E-E-EecccC
Q 005123 346 EL---ESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---------------------V-E-IHNVHD 398 (713)
Q Consensus 346 ~l---~~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~---------------------~-~-~~~~h~ 398 (713)
.+ ..+.. ....|..|+. +....++...||.|+.|=......+ . . ......
T Consensus 300 ~~~~P~~v~~~~~~~i~~ia~---G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~ 376 (473)
T 3of7_A 300 LVTKPKRLALPDNVVIRSIAA---GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV 376 (473)
T ss_dssp EEEEEEECCCCTTCCEEEEEE---CSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS
T ss_pred eeeccccccccCCccEEEEEe---CCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC
Confidence 11 11111 1245777765 4556666688999999975432111 0 0 000111
Q ss_pred CCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 399 NTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 399 ~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
..|..|+.-.+..++.+.|+.|..|=.+..+.
T Consensus 377 ~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~Gq 408 (473)
T 3of7_A 377 PKFKSVAAGSHHSVAVAQNGIAYSWGFGETYA 408 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTCT
T ss_pred CceEEEEeCCCeEEEEeCCCcEEEeeCCCCCC
Confidence 25777777666666667999999998776554
No 374
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.14 E-value=0.48 Score=54.89 Aligned_cols=190 Identities=9% Similarity=0.056 Sum_probs=102.1
Q ss_pred cCCCEEEEEeCC----CcEEEEEcCCCceeeee-c-----cCC-CCeeEEEEec-CCCEEEEEECC------CeEEEEEc
Q 005123 196 HNDNWMVSGDDG----GAIKYWQNNMNNVKANK-S-----AHK-ESVRDLSFCR-TDLKFCSCSDD------TTVKVWDF 257 (713)
Q Consensus 196 pdg~~L~sgs~D----G~I~vwdl~~~~~~~~~-~-----~~~-~~V~~l~fs~-dg~~Las~s~D------g~I~iwDl 257 (713)
-++.+++.|+.+ ..+.+||..+++-.... . ... ..-.+++... +++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 356677777643 46788888877543322 1 111 1112333333 66677776643 35888998
Q ss_pred CCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEc-----cCCCCeEEEEEcCC-CCEE
Q 005123 258 ARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKDS--LVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQN-GNWV 327 (713)
Q Consensus 258 ~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~Dg--~I~IwDl~t~~~~~~~~-----~h~~~I~si~fspd-g~~L 327 (713)
.+.+-... +....... +++...++++++.|+.++ .+.+||..+.+-...-. .......++.+..+ ++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 87543221 11111222 233323688888887655 69999998765322111 11222333555554 6677
Q ss_pred EEEEC--C-----CeEEEEECCCCee-----EEEee----cCCCCeEEEEEeCCCCCEEEEEEC--------CCcEEEEE
Q 005123 328 LTASK--D-----QIIKLYDIRAMKE-----LESFR----GHRKDVTALAWHPFHEEYFVSGSL--------DGSIFHWL 383 (713)
Q Consensus 328 atgs~--D-----g~I~IwDl~t~~~-----l~~~~----~h~~~V~sl~fsp~~~~~lasgs~--------DG~I~Iwd 383 (713)
+.|+. + ..+.+||+.+.+- ...+. ........+.+. ++.+++.|+. ...|.+||
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCCCCCCCCeEEEEE
Confidence 77765 2 4689999887651 11111 111222333332 2677777774 34588888
Q ss_pred cCCCC
Q 005123 384 VGHET 388 (713)
Q Consensus 384 ~~~~~ 388 (713)
+.+..
T Consensus 633 ~~t~~ 637 (695)
T 2zwa_A 633 PLSET 637 (695)
T ss_dssp TTTTE
T ss_pred CCCCe
Confidence 86653
No 375
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=95.01 E-value=3.9 Score=42.40 Aligned_cols=197 Identities=11% Similarity=0.077 Sum_probs=112.9
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCC---------CceE---EEEeccCCCEEEEEEccC---CCEEEEEeCCC
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---------FNFE---MILQAHDHAIRSMVWSHN---DNWMVSGDDGG 208 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t---------~~~~---~~l~~h~~~V~sl~~spd---g~~L~sgs~DG 208 (713)
.+.+..+......+.|+..+..|.++-+.... +..+ ..+. ....|.++....+ +.+|+.++.+|
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G 116 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNG 116 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTS
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCC
Confidence 34555566666677888888889877665321 1110 0111 2344555433332 56899999999
Q ss_pred cEEEEEcCCC--------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCC
Q 005123 209 AIKYWQNNMN--------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGW 271 (713)
Q Consensus 209 ~I~vwdl~~~--------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~ 271 (713)
.++...+..- .....+.. .+.+..+....+...|+..+.+|.+..++... +.....+. ...
T Consensus 117 ~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d 194 (323)
T 1wp5_A 117 MVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGD 194 (323)
T ss_dssp EEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTC
T ss_pred eEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCC
Confidence 9999876421 11122222 35666666666667888899999998888642 11122222 234
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCcEEEEECCC-------CceEEEE---ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 005123 272 DVKSVDWHPTKS-LLVSGGKDSLVKLWDAKS-------GRELCSF---HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 272 ~V~sl~~spdg~-~L~sgs~Dg~I~IwDl~t-------~~~~~~~---~~h~~~I~si~fspdg~~Latgs~Dg~I~IwD 340 (713)
.|.++....++. .|++.+..|..+..++.. ++-+..+ +.....+..+....++..|+..+.+|.+..++
T Consensus 195 ~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~ 274 (323)
T 1wp5_A 195 YIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIK 274 (323)
T ss_dssp CEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEE
Confidence 566665544445 788888889888877643 1112222 22222454333333445566777777776666
Q ss_pred CCC
Q 005123 341 IRA 343 (713)
Q Consensus 341 l~t 343 (713)
+..
T Consensus 275 ~~~ 277 (323)
T 1wp5_A 275 VGD 277 (323)
T ss_dssp GGG
T ss_pred hhh
Confidence 543
No 376
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=94.94 E-value=0.0036 Score=68.77 Aligned_cols=8 Identities=0% Similarity=-0.085 Sum_probs=3.1
Q ss_pred cccccccC
Q 005123 530 QQQGYQQN 537 (713)
Q Consensus 530 ~~~~~~~~ 537 (713)
+||+|+|.
T Consensus 380 ~~~~~~~~ 387 (449)
T 3iot_A 380 AFESLKSF 387 (449)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 33334443
No 377
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=94.72 E-value=5.2 Score=42.34 Aligned_cols=197 Identities=9% Similarity=0.030 Sum_probs=111.9
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCC---------CceEE---EEeccCCCEEEEEEcc---CCCEEEEEeCC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---------FNFEM---ILQAHDHAIRSMVWSH---NDNWMVSGDDG 207 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t---------~~~~~---~l~~h~~~V~sl~~sp---dg~~L~sgs~D 207 (713)
..+.|..+......+.|+..+..|.++-+.... +..+. .+. ....|.++.... ++.+|+.++..
T Consensus 44 e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~ 122 (370)
T 3l6v_A 44 EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRN 122 (370)
T ss_dssp CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCC
Confidence 456677777777777888888888887665321 11111 122 234555554432 45689999999
Q ss_pred CcEEEEEcCCC-------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCC
Q 005123 208 GAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGW 271 (713)
Q Consensus 208 G~I~vwdl~~~-------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~ 271 (713)
|.++...+..- .....+.. .+.+..+....+...|+..+.+|.+..++... +.....+. ...
T Consensus 123 G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d 200 (370)
T 3l6v_A 123 GTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGE 200 (370)
T ss_dssp SEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTC
T ss_pred CeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCC
Confidence 99999875432 12222322 45566666666667888889999988887632 11112222 234
Q ss_pred ceEEEEEcC-----------------------------------CCCEEEEEeCCCcEEEEECCCCce-------EE--E
Q 005123 272 DVKSVDWHP-----------------------------------TKSLLVSGGKDSLVKLWDAKSGRE-------LC--S 307 (713)
Q Consensus 272 ~V~sl~~sp-----------------------------------dg~~L~sgs~Dg~I~IwDl~t~~~-------~~--~ 307 (713)
.|.++.... ++..|++.+..|..+...+..... +. .
T Consensus 201 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k 280 (370)
T 3l6v_A 201 EVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQ 280 (370)
T ss_dssp CEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSC
T ss_pred EEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEE
Confidence 455544443 345788889999988887643211 11 1
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 308 FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 308 ~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
+....+.+..+.+..++..|+..+..|.+.-..+.
T Consensus 281 ~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 281 TTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp CCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred ecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 22223345444444444555556666665555543
No 378
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=94.18 E-value=4.5 Score=42.94 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=94.5
Q ss_pred eEEEEEcCCC--eeEEEEcc------CCCceEEEEEc-C--C----CCEEEEEe-CCCcEEEEECCCCceEEEEcc----
Q 005123 251 TVKVWDFARC--QEERSLTG------HGWDVKSVDWH-P--T----KSLLVSGG-KDSLVKLWDAKSGRELCSFHG---- 310 (713)
Q Consensus 251 ~I~iwDl~~~--~~~~~l~~------h~~~V~sl~~s-p--d----g~~L~sgs-~Dg~I~IwDl~t~~~~~~~~~---- 310 (713)
+|.+||+.+. +.++.+.- ....+..|.++ . + +.++..+. .+..|.|+|+++++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888887 77776643 23457788887 2 2 23444443 356799999999876655421
Q ss_pred C--------------CCCeEEEEEcCC----CCEEEEEECCCeEEEEECC-----CC---eeEEEee--cCCCCeEEEEE
Q 005123 311 H--------------KNMVLCVKWNQN----GNWVLTASKDQIIKLYDIR-----AM---KELESFR--GHRKDVTALAW 362 (713)
Q Consensus 311 h--------------~~~I~si~fspd----g~~Latgs~Dg~I~IwDl~-----t~---~~l~~~~--~h~~~V~sl~f 362 (713)
. ...|..|+++++ +++|+.....+ -++|.+. +. ..+..+- +....-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 0 236788999987 78888776655 2333332 11 1122221 11133445666
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCC-CC--ceEEEe-c-ccCCCeEEEEEcCCCcEEE
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGH-ET--PQVEIH-N-VHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~-~~--~~~~~~-~-~h~~~V~~l~~spdg~~la 414 (713)
.+.++.++++--....|..|+..+ .. ....++ . ..-..+.++++..++.+.+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv 339 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWF 339 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEE
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEE
Confidence 533677888888888999999865 21 112222 1 1123456677666664433
No 379
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=94.16 E-value=8.7 Score=44.95 Aligned_cols=145 Identities=11% Similarity=0.152 Sum_probs=75.3
Q ss_pred CCceEEEEEccC-CCEEEEEECCCcEEEEeCCCCceEEEEecc-------CCCEEEEEEccCC-CEEEEEeCCCc----E
Q 005123 144 RCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHND-NWMVSGDDGGA----I 210 (713)
Q Consensus 144 ~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h-------~~~V~sl~~spdg-~~L~sgs~DG~----I 210 (713)
...|.+|+++++ ...+++++..+.|+..+-.. +.-..+..+ ...|.+|++.+.. +.++++..+.. .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG-~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGT-SKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTT-TEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCC-CCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 357999999986 35677777777777665332 222222221 2469999998743 45555443211 3
Q ss_pred EEEEcC-CCceeeeecc---------CCCCeeEEEEecCC-CEEEEEECCCeEEEEEcC-CCeeEEEEcc------CCCc
Q 005123 211 KYWQNN-MNNVKANKSA---------HKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFA-RCQEERSLTG------HGWD 272 (713)
Q Consensus 211 ~vwdl~-~~~~~~~~~~---------~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~-~~~~~~~l~~------h~~~ 272 (713)
.||... .++.-..+.. ....+..|++++.. +.++++...+.| |-.. .++.-..+.. ....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCCC
Confidence 444333 3332222211 01135667887643 455555534433 3222 2222122221 1245
Q ss_pred eEEEEEcCC-CCEEEEEeCC
Q 005123 273 VKSVDWHPT-KSLLVSGGKD 291 (713)
Q Consensus 273 V~sl~~spd-g~~L~sgs~D 291 (713)
+..|.+++. .+.|+++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 788999874 4566666654
No 380
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=93.88 E-value=8 Score=41.23 Aligned_cols=227 Identities=9% Similarity=0.029 Sum_probs=123.8
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCC------------ce-EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------------NF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~------------~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~ 211 (713)
..|..|+.. ..+.++-..||.|+.|-.... .. -..+ .....|..|+.. ..+.++-..||.|.
T Consensus 59 ~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G--~~hs~alt~~G~v~ 133 (413)
T 1a12_A 59 EDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAG--DSHTAALTDDGRVF 133 (413)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecC--CCeEEEEcCCCcEE
Confidence 456666654 345666678899999964321 00 1111 123466666653 35566667889999
Q ss_pred EEEc--CCC-ce----------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE---------------
Q 005123 212 YWQN--NMN-NV----------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--------------- 263 (713)
Q Consensus 212 vwdl--~~~-~~----------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~--------------- 263 (713)
.|-. +.. .+ .-........|..|+. -....++-+.||.|+.|-....-.+
T Consensus 134 ~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~ 211 (413)
T 1a12_A 134 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG 211 (413)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGG
T ss_pred EeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe--cCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccc
Confidence 9964 211 10 0011122345655555 3445566678999999975431100
Q ss_pred -------EEEcc------CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c----------eEEEEccCC---CCeE
Q 005123 264 -------RSLTG------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-R----------ELCSFHGHK---NMVL 316 (713)
Q Consensus 264 -------~~l~~------h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~----------~~~~~~~h~---~~I~ 316 (713)
..+.. ....|..|+.. ..+.++...||.|+.|-.... + ....+.... ..|.
T Consensus 212 ~~~~~~P~~v~~~~~g~~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 212 LERLLVPKCVMLKSRGSRGHVRFQDAFCG--AYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp HHHHHSCEECCCBCSSCCSBCCEEEEEEE--TTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred ccccccCceEeeccccccCCccEEEEEeC--CCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 00111 22456777665 344555568899999965431 1 111122111 2366
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC---------e---eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 317 CVKWNQNGNWVLTASKDQIIKLYDIRAM---------K---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg~I~IwDl~t~---------~---~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
.|+. ...+.++-..||.|+.|-.... + .-..+.. ...|..|+. +....++...||.|+.|=.
T Consensus 290 ~ia~--G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~---G~~hs~alt~~G~v~~wG~ 363 (413)
T 1a12_A 290 GFSG--GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVAC---GASVGYAVTKDGRVFAWGM 363 (413)
T ss_dssp EEEE--CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEE---CSSEEEEEETTSCEEEEEC
T ss_pred EEec--ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEE---CcceEEEEeCCCCEEEecC
Confidence 6554 3456666778999999965321 1 1112221 226777765 4566677778999999976
Q ss_pred CC
Q 005123 385 GH 386 (713)
Q Consensus 385 ~~ 386 (713)
..
T Consensus 364 n~ 365 (413)
T 1a12_A 364 GT 365 (413)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 381
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=93.56 E-value=10 Score=41.36 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=101.0
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcC---CCce------------eeeecc-CCCCeeEEEEecCCCEEEEEECCC
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---MNNV------------KANKSA-HKESVRDLSFCRTDLKFCSCSDDT 250 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~---~~~~------------~~~~~~-~~~~V~~l~fs~dg~~Las~s~Dg 250 (713)
..|..|+.. ..+.++-..||.|..|-.. .+.+ ...+.. ....|..|+. -....++.+.+|
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~--G~~hs~alt~~G 223 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP--GKDHILFLDEEG 223 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEe--cCCeEEEEeCCC
Confidence 456666653 4455666778999999641 1110 001111 1224666655 345566667899
Q ss_pred eEEEEEcCCCeeE--------------EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc-----------e
Q 005123 251 TVKVWDFARCQEE--------------RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-GR-----------E 304 (713)
Q Consensus 251 ~I~iwDl~~~~~~--------------~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t-~~-----------~ 304 (713)
.|+.|-....-.+ -... ....|..|+.- ....++...||.|+.|-... ++ .
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~-~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPF-GLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEEC-SCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceec-CCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 9999965431110 0000 11457777665 44556667789999995432 11 1
Q ss_pred E---EEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--------------------e--E---EEeecCCC
Q 005123 305 L---CSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--------------------E--L---ESFRGHRK 355 (713)
Q Consensus 305 ~---~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~--------------------~--l---~~~~~h~~ 355 (713)
+ ..+.. ....|..|+. ...+.++.+.||.|+.|-....- . + ..+. ...
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~--G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~-~~~ 377 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAA--GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN-NVP 377 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEE--CSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECC-SSC
T ss_pred eeccccccccCCccEEEEEe--CCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccC-CCC
Confidence 1 11111 1234666654 34455566788889888653210 0 0 1111 111
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
.|..|+. +....++...||.|+.|=...
T Consensus 378 ~v~~Ia~---G~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 378 KFKSVAA---GSHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp CEEEEEE---CSSEEEEEETTSCEEEEECCT
T ss_pred ceEEEEe---CCCeEEEEeCCCcEEEeeCCC
Confidence 5666665 456666778899999997643
No 382
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=93.16 E-value=16 Score=42.36 Aligned_cols=229 Identities=10% Similarity=0.047 Sum_probs=109.1
Q ss_pred CceEEEEEccCC-CEEEEEECCCcEEEEeCCCCceEEEEecc-------CCCEEEEEEccC-CCEEEEEeCC-------C
Q 005123 145 CSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHN-DNWMVSGDDG-------G 208 (713)
Q Consensus 145 ~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t~~~~~~l~~h-------~~~V~sl~~spd-g~~L~sgs~D-------G 208 (713)
+.|.+|+++++. ..|+++...+.|+.++-....... +..+ ...|.+|++++. .+.|+++... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~-i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIP-LLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEE-CCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEE-CcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 379999999864 556667766777777644333332 2221 245999999983 3455544321 1
Q ss_pred cEEEEEcCC-Cceeeeec-cC--------CCCeeEEEEecCC-CEEEEEECCCeEEEEEcC-CCeeEEEEcc--------
Q 005123 209 AIKYWQNNM-NNVKANKS-AH--------KESVRDLSFCRTD-LKFCSCSDDTTVKVWDFA-RCQEERSLTG-------- 268 (713)
Q Consensus 209 ~I~vwdl~~-~~~~~~~~-~~--------~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~-~~~~~~~l~~-------- 268 (713)
...||...+ ++.-..+. .. ...+..|++++.. +.|+++...|. .||-.. .++.-..+..
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~-gl~~S~DgG~tW~~~~~~~~~~~~~ 180 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGN-GLWRSTDYGVTWSKVESFPNPGTYI 180 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTC-CEEEESSTTSSCEECTTCCCCCCCB
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCC-cEEEeCCCCcceecccCCCCCcccc
Confidence 245665443 32211111 11 1124678888754 55666653311 233222 1211111111
Q ss_pred ---------CCCceEEEEEcCCC-------CEEEEEeCCCcEEEEEC-CCCceEEEEccCC-CC-eEEEEEcCCCCEEEE
Q 005123 269 ---------HGWDVKSVDWHPTK-------SLLVSGGKDSLVKLWDA-KSGRELCSFHGHK-NM-VLCVKWNQNGNWVLT 329 (713)
Q Consensus 269 ---------h~~~V~sl~~spdg-------~~L~sgs~Dg~I~IwDl-~t~~~~~~~~~h~-~~-I~si~fspdg~~Lat 329 (713)
....+..+.+++.. ..|.++..++...||-. +.++.-..+.... .. ...+.+++++.++++
T Consensus 181 ~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~~~~~~~~~~~~~~~l~~~ 260 (737)
T 2cn3_A 181 YDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLASNGMLYIT 260 (737)
T ss_dssp SCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCCSSEEEEEEECTTSEEEEE
T ss_pred cCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCCcccceEEEECCCCeEEEE
Confidence 11247778887743 25666655543224433 3344333332211 11 245667776655554
Q ss_pred EE---------CCCeEEEEECCCCeeEEEeecC-C------CCeEEEEEeCCCCCEEEEEECC
Q 005123 330 AS---------KDQIIKLYDIRAMKELESFRGH-R------KDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 330 gs---------~Dg~I~IwDl~t~~~l~~~~~h-~------~~V~sl~fsp~~~~~lasgs~D 376 (713)
.. ..+.|...+-. ++.-..+... . -....|++++.+.+.|++++.+
T Consensus 261 ~~d~~g~y~~~~~g~v~~s~d~-G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~~ 322 (737)
T 2cn3_A 261 YGDTCGPYDGNGKGQVWKFNTR-TGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSMN 322 (737)
T ss_dssp EESSCCSSCCSCCEEEEEEETT-TCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEEC
T ss_pred ecCCCCccccccCceEEEEeCC-CCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEecc
Confidence 43 22344444432 2222222111 1 1134688888666666655543
No 383
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=92.05 E-value=18 Score=43.19 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc
Q 005123 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~ 309 (713)
.+.+++...+..++++.+.|+++|||++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777888888899999999999999999999887753
No 384
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.75 E-value=15 Score=43.85 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=46.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-----CCeEEEEEeCCCCCEEEEE---ECCCcEEEEEc
Q 005123 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-----KDVTALAWHPFHEEYFVSG---SLDGSIFHWLV 384 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-----~~V~sl~fsp~~~~~lasg---s~DG~I~Iwd~ 384 (713)
.+.+++...+..++++-+.|+++|||++.+++++.+..... .........+..+.+|++. ..+|.+++|.+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~ 315 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL 315 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence 46777788888999999999999999999999987754211 1111222333334444332 23566777765
No 385
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.93 E-value=22 Score=37.61 Aligned_cols=176 Identities=6% Similarity=-0.019 Sum_probs=102.4
Q ss_pred CCceEEEEEccCCCEEEE--EEC-------------CCcEEEEeCCCC--ceEEEEecc------CCCEEEEEEc-c--C
Q 005123 144 RCSINRVLWTPTGRRLIT--GSQ-------------SGEFTLWNGQSF--NFEMILQAH------DHAIRSMVWS-H--N 197 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Lat--gs~-------------dg~V~Iwd~~t~--~~~~~l~~h------~~~V~sl~~s-p--d 197 (713)
--+|..+....++++-+. |.. --+|.+||+.+. ++++++... .+.+..+++. . +
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 346777888777764442 211 125889999999 888887643 3457888887 2 2
Q ss_pred ----CCEEEEEe-CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc
Q 005123 198 ----DNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD 272 (713)
Q Consensus 198 ----g~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~ 272 (713)
+.+++.+. .+.-|.|+|+.+++..+.+..+ |.++....++ -+|.-.. -...
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--------~~pd~~~~~~--i~G~~~~--------------~~~G 221 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--------FKAERPTKFD--YGGKEYE--------------FKAG 221 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--------GSCCSCEEEE--ETTEEEE--------------ECCC
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--------CccccCcceE--ECCEEeE--------------eccC
Confidence 34555554 4578999999999877665211 2233111111 1222111 1246
Q ss_pred eEEEEEcCC----CCEEEEEeCCC-cEEEEE---CCCC---ceEEEEccC--CCCeEEEEEc-CCCCEEEEEECCCeEEE
Q 005123 273 VKSVDWHPT----KSLLVSGGKDS-LVKLWD---AKSG---RELCSFHGH--KNMVLCVKWN-QNGNWVLTASKDQIIKL 338 (713)
Q Consensus 273 V~sl~~spd----g~~L~sgs~Dg-~I~IwD---l~t~---~~~~~~~~h--~~~I~si~fs-pdg~~Latgs~Dg~I~I 338 (713)
|..|+++++ ++.|......+ .++-.. +++. ..+..+-.. ...-..+++. .+|.++++--.+..|..
T Consensus 222 i~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~ 301 (381)
T 3q6k_A 222 IFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSC 301 (381)
T ss_dssp EEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEE
T ss_pred ceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEE
Confidence 889999987 67777776544 233222 1221 222222111 1334456675 57777777778889999
Q ss_pred EECCC
Q 005123 339 YDIRA 343 (713)
Q Consensus 339 wDl~t 343 (713)
|+..+
T Consensus 302 w~~~~ 306 (381)
T 3q6k_A 302 WNTQK 306 (381)
T ss_dssp EETTS
T ss_pred EeCCC
Confidence 99875
No 386
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=87.47 E-value=24 Score=35.08 Aligned_cols=143 Identities=14% Similarity=0.045 Sum_probs=82.3
Q ss_pred CEEEEEECCCcEEEEeCCCCce-EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC---C----Cceee-ee-cc
Q 005123 157 RRLITGSQSGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M----NNVKA-NK-SA 226 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~---~----~~~~~-~~-~~ 226 (713)
..+++.+.+|.|+--....... ...+.. .+.+..+......+.|+..+..|.++-+... . +..+. .+ -.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 3456677788777665443211 011222 3444444444455567777778887665432 1 11110 11 12
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-------CeeEEEEccCCCceEEEEEc-CCCCEEEEEeCCCcEEEEE
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-------CQEERSLTGHGWDVKSVDWH-PTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-------~~~~~~l~~h~~~V~sl~~s-pdg~~L~sgs~Dg~I~IwD 298 (713)
..+.|.++....++.+|+.++.+|.++...+.. +.....+.. .+.+..+... .++..|+..+.+|.+..++
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 245677775445667788999999999998732 223333432 3455555555 3456788889999999898
Q ss_pred CCC
Q 005123 299 AKS 301 (713)
Q Consensus 299 l~t 301 (713)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 753
No 387
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=87.37 E-value=40 Score=37.42 Aligned_cols=244 Identities=10% Similarity=0.068 Sum_probs=123.2
Q ss_pred cEEEEeCCCCceEEEEec--------cCCCEEEEEEccCCC-EEEEEeCCCc----------------------------
Q 005123 167 EFTLWNGQSFNFEMILQA--------HDHAIRSMVWSHNDN-WMVSGDDGGA---------------------------- 209 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~--------h~~~V~sl~~spdg~-~L~sgs~DG~---------------------------- 209 (713)
.|.+|+++ ++.+..+.. |...+....|.-||+ -|++...+|+
T Consensus 152 ~l~aY~ld-G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEy 230 (591)
T 2zux_A 152 LIDAYKLD-GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEY 230 (591)
T ss_dssp EEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcE
Confidence 46666665 333333321 334466666666664 4566655554
Q ss_pred EEEEEcCCCceeeeeccC--CCC---------------eeEEEEecCC--CEEEEEE---CCCeEEEEEcCCCeeEEEE-
Q 005123 210 IKYWQNNMNNVKANKSAH--KES---------------VRDLSFCRTD--LKFCSCS---DDTTVKVWDFARCQEERSL- 266 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~--~~~---------------V~~l~fs~dg--~~Las~s---~Dg~I~iwDl~~~~~~~~l- 266 (713)
|.|+|-.+++.+.+.... ... ..++++. |+ -.++.+- ....|..||++.++.....
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~ 309 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWT 309 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEE
Confidence 778887777766554321 111 1222221 22 2233332 1235888998777654333
Q ss_pred -ccCC-----------CceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEE-ccCCCCeEEEEEcCC--CCEEEEE
Q 005123 267 -TGHG-----------WDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWNQN--GNWVLTA 330 (713)
Q Consensus 267 -~~h~-----------~~V~sl~~spdg~-~L~sgs~Dg~I~IwDl~t~~~~~~~-~~h~~~I~si~fspd--g~~Latg 330 (713)
.... ..+.-..+.-||+ -|+.|+. ++| .+|+.+... .+|...+....|.|+ |.-++.+
T Consensus 310 ~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~ 383 (591)
T 2zux_A 310 LDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQV 383 (591)
T ss_dssp EETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEE
T ss_pred ecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEE
Confidence 2111 1233344444444 3333321 223 223333332 267788888888886 4566666
Q ss_pred ECCC----eEEEEECCCCeeEEEeecC--CCCeEEEEEeCCCC-CEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEE
Q 005123 331 SKDQ----IIKLYDIRAMKELESFRGH--RKDVTALAWHPFHE-EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403 (713)
Q Consensus 331 s~Dg----~I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~~~-~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~ 403 (713)
.+++ -..+.|.++++.+...... .+......|.++.. --+.+ ++ .+|+.+. +.+... .-...-..
T Consensus 384 ~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~~G-~~i~~~--~p~~~N~~ 455 (591)
T 2zux_A 384 HEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWA---NG--SLYSAKG-VKIGSG--VPSSTNFG 455 (591)
T ss_dssp CCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEEEE---TT--EEECTTS-CBCSSC--CCSCCSEE
T ss_pred ecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCCceEEEe---cC--ceECCCC-CEecCC--CCCCccee
Confidence 6542 3567899999999877543 34444444555222 12222 22 4566533 221111 01122345
Q ss_pred EEEcCCCcEEEEeCCcEEEEecC
Q 005123 404 LAWHPIGYLLCSNDHTTKFWCRN 426 (713)
Q Consensus 404 l~~spdg~~laS~Dg~v~iWd~~ 426 (713)
|-|+.|...-.-..+.|.-|+..
T Consensus 456 i~WdGDl~relld~~~i~k~~~~ 478 (591)
T 2zux_A 456 IWWDGDLLREQLDSNRIDKWDYQ 478 (591)
T ss_dssp ECCSSSSSCEEEETTEEEEEETT
T ss_pred EEECCCCcHhhhCCceEEecccC
Confidence 77888874444445567777754
No 388
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=86.44 E-value=12 Score=37.35 Aligned_cols=143 Identities=8% Similarity=0.024 Sum_probs=84.3
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-------CeeE---EEEcc
Q 005123 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-------CQEE---RSLTG 268 (713)
Q Consensus 199 ~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-------~~~~---~~l~~ 268 (713)
..+++.+.+|.|+--...............+.+..+........|+..+..|.++-+.+.. +..+ ..+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 3456677788877665443221111112334555555555666777888888877665422 2211 1122
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceEEEEccCCCCeEEEEEc-CCCCEEEEEECCCeEEEEE
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWN-QNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t-------~~~~~~~~~h~~~I~si~fs-pdg~~Latgs~Dg~I~IwD 340 (713)
....|.++....++.+|+.++.+|.++...+.. +.....++. ...+..+... .++..|+..+.+|.+..++
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234677765444567788899999999987742 223333332 3345555554 3456788889999988888
Q ss_pred CCC
Q 005123 341 IRA 343 (713)
Q Consensus 341 l~t 343 (713)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 754
No 389
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=84.46 E-value=64 Score=37.11 Aligned_cols=201 Identities=12% Similarity=0.057 Sum_probs=99.0
Q ss_pred CeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccC-------CCceEEEEEcC-CCCEEEEEeCC-------Cc
Q 005123 230 SVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGH-------GWDVKSVDWHP-TKSLLVSGGKD-------SL 293 (713)
Q Consensus 230 ~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h-------~~~V~sl~~sp-dg~~L~sgs~D-------g~ 293 (713)
.|..|++++++ ..|+++...+.|..++-. ++.-..+..+ ...|.+|+++| +.+.|+++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 89999999864 556667666777666532 2222222221 24589999998 33444444321 12
Q ss_pred EEEEEC-CCCceEEEEcc-C--------CCCeEEEEEcCC-CCEEEEEECCCeEEEEE-CC---CCeeEEEeecC-----
Q 005123 294 VKLWDA-KSGRELCSFHG-H--------KNMVLCVKWNQN-GNWVLTASKDQIIKLYD-IR---AMKELESFRGH----- 353 (713)
Q Consensus 294 I~IwDl-~t~~~~~~~~~-h--------~~~I~si~fspd-g~~Latgs~Dg~I~IwD-l~---t~~~l~~~~~h----- 353 (713)
..||.. +.++.-..+.. . ...+.+|+++|. .+.|+++...+. -||. .+ +.+.+..+..+
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~-gl~~S~DgG~tW~~~~~~~~~~~~~~ 181 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGN-GLWRSTDYGVTWSKVESFPNPGTYIY 181 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTC-CEEEESSTTSSCEECTTCCCCCCCBS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCC-cEEEeCCCCcceecccCCCCCccccc
Confidence 445543 33433222211 1 112467899884 466666664321 2332 22 22322221111
Q ss_pred ---------CCCeEEEEEeCCCC------CEEEEEECCCcEEEEEcCCCCceEEEecc-cCCC-eEEEEEcCCCcEEEE-
Q 005123 354 ---------RKDVTALAWHPFHE------EYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDNT-VWDLAWHPIGYLLCS- 415 (713)
Q Consensus 354 ---------~~~V~sl~fsp~~~------~~lasgs~DG~I~Iwd~~~~~~~~~~~~~-h~~~-V~~l~~spdg~~laS- 415 (713)
...+..+.+++.+. ..|.++..++...||.............. .... ...+.+++++.+.++
T Consensus 182 ~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~~~~~~~~~~~~~~~l~~~~ 261 (737)
T 2cn3_A 182 DPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLASNGMLYITY 261 (737)
T ss_dssp CTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCCSSEEEEEEECTTSEEEEEE
T ss_pred CcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCCcccceEEEECCCCeEEEEe
Confidence 12477788877432 25555555543334544443333333221 1122 244567777655543
Q ss_pred eC--------CcEEEEecCCCCCcc
Q 005123 416 ND--------HTTKFWCRNRPGDTA 432 (713)
Q Consensus 416 ~D--------g~v~iWd~~~~~~~~ 432 (713)
.| ....||..+..+...
T Consensus 262 ~d~~g~y~~~~~g~v~~s~d~G~tW 286 (737)
T 2cn3_A 262 GDTCGPYDGNGKGQVWKFNTRTGEW 286 (737)
T ss_dssp ESSCCSSCCSCCEEEEEEETTTCCE
T ss_pred cCCCCccccccCceEEEEeCCCCCE
Confidence 33 456677665555443
No 390
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=82.69 E-value=64 Score=35.78 Aligned_cols=268 Identities=9% Similarity=0.081 Sum_probs=140.6
Q ss_pred CCCceEEEEEccCCC-EEEEEECCCc----------------------------EEEEeCCCCceEEEEecc--CCC---
Q 005123 143 NRCSINRVLWTPTGR-RLITGSQSGE----------------------------FTLWNGQSFNFEMILQAH--DHA--- 188 (713)
Q Consensus 143 H~~~V~~v~~spdg~-~Latgs~dg~----------------------------V~Iwd~~t~~~~~~l~~h--~~~--- 188 (713)
|-..+....|.-||+ -|++.+.+|+ |.|+|-.+++.+.++... ...
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 555688888888884 4667766665 788888888877765432 111
Q ss_pred ------------EEEEEEccCC--CEEEEEe---CCCcEEEEEcCCCceeeee--ccCC-----------CCeeEEEEec
Q 005123 189 ------------IRSMVWSHND--NWMVSGD---DGGAIKYWQNNMNNVKANK--SAHK-----------ESVRDLSFCR 238 (713)
Q Consensus 189 ------------V~sl~~spdg--~~L~sgs---~DG~I~vwdl~~~~~~~~~--~~~~-----------~~V~~l~fs~ 238 (713)
..++++. |+ -.++.+- ....|..||.+.+++.... .... ..+.-..+.-
T Consensus 257 WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDg 335 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDG 335 (591)
T ss_dssp GTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSS
T ss_pred cccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCC
Confidence 2334432 22 2333332 1234778888777653322 1110 1223333344
Q ss_pred CCCE-EEEE----ECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC--CCEEEEEeCCC----cEEEEECCCCceEEE
Q 005123 239 TDLK-FCSC----SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDS----LVKLWDAKSGRELCS 307 (713)
Q Consensus 239 dg~~-Las~----s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg----~I~IwDl~t~~~~~~ 307 (713)
||+- |+.+ ..||++ +|... .+|...+....|.|+ +..++.+.+++ -..+.|.++++.+..
T Consensus 336 DG~dEIv~Gs~~iD~dG~~-L~st~--------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~ 406 (591)
T 2zux_A 336 DGKDEIIFGSMAVDHDGKG-MYSTG--------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWG 406 (591)
T ss_dssp SSSCEEEETTEEECTTSCE-EEECS--------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEE
T ss_pred CCCceEEEeeeEECCCCCE-eeeCC--------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEE
Confidence 4432 3322 233332 44432 268888888888886 34666666542 356789999999887
Q ss_pred EccC--CCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 308 FHGH--KNMVLCVKWNQN--GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 308 ~~~h--~~~I~si~fspd--g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
.... .+......|.++ |--+.+ +. .||+.+ ++.+.... ....-..+-|.-+..+.|+- .+.|.-|+
T Consensus 407 ~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~~-G~~i~~~~-p~~~N~~i~WdGDl~relld---~~~i~k~~ 476 (591)
T 2zux_A 407 VYAGKDVGRGMAADIDPRYPGQEVWA---NG--SLYSAK-GVKIGSGV-PSSTNFGIWWDGDLLREQLD---SNRIDKWD 476 (591)
T ss_dssp ECCSSCCCCEEEECCCTTSSSCEEEE---TT--EEECTT-SCBCSSCC-CSCCSEEECCSSSSSCEEEE---TTEEEEEE
T ss_pred cCCCCCCCceeEEecCCCCCceEEEe---cC--ceECCC-CCEecCCC-CCCcceeEEECCCCcHhhhC---CceEEecc
Confidence 7543 334444445554 222332 22 466754 44443221 11222356676644444543 23677888
Q ss_pred cCCCC--ceEEEec------ccCCCeEEEEEcCCC--cEE-EE-eCCcEEEEecCCCCC
Q 005123 384 VGHET--PQVEIHN------VHDNTVWDLAWHPIG--YLL-CS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 384 ~~~~~--~~~~~~~------~h~~~V~~l~~spdg--~~l-aS-~Dg~v~iWd~~~~~~ 430 (713)
...+. .++.... ....+..+..+..|. .+| .+ ++..++||.......
T Consensus 477 ~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~ 535 (591)
T 2zux_A 477 YQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTE 535 (591)
T ss_dssp TTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCS
T ss_pred cCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCCCc
Confidence 65443 1222111 012234444555554 333 45 556799998765555
No 391
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=80.67 E-value=91 Score=36.19 Aligned_cols=146 Identities=7% Similarity=0.031 Sum_probs=76.0
Q ss_pred CCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeecc-------CCCCeeEEEEecCC-CEEEEEECCCe----E
Q 005123 186 DHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNVKANKSA-------HKESVRDLSFCRTD-LKFCSCSDDTT----V 252 (713)
Q Consensus 186 ~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~~~~~~~~~-------~~~~V~~l~fs~dg-~~Las~s~Dg~----I 252 (713)
...|.+|+++++. ..++++...+.|...+ +.++.-..+.. ....|.+|++.+.. ..++++..+.. .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999864 5667777777665554 22332222222 13469999998743 44555443311 3
Q ss_pred EEEEc-CCCeeEEEEccC---------CCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEcc------CCCCe
Q 005123 253 KVWDF-ARCQEERSLTGH---------GWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHG------HKNMV 315 (713)
Q Consensus 253 ~iwDl-~~~~~~~~l~~h---------~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~------h~~~I 315 (713)
.||.. ..++.-..+... ...+..|++++. .+.++++...+.|. ...+.++.-..+.. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 33333 233322222110 113567888874 34566665444332 22333443333321 12457
Q ss_pred EEEEEcC-CCCEEEEEECC
Q 005123 316 LCVKWNQ-NGNWVLTASKD 333 (713)
Q Consensus 316 ~si~fsp-dg~~Latgs~D 333 (713)
..|.+++ +++.|+++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 8899987 44566666654
No 392
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.38 E-value=33 Score=41.87 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=31.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
.+.+++...+..+|++-+.|+++||||+.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556666788999999999999999999999987754
No 393
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.67 E-value=1e+02 Score=37.50 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=31.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc
Q 005123 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~ 309 (713)
.+.+++...+..+|++-+.|+++||||+.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556666778899999999999999999999988754
No 394
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Probab=67.53 E-value=2.5 Score=36.71 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=31.4
Q ss_pred cCCCCCCCCC------CCCCCCCCCCCc-ccCCCCCCCCCCCCcc
Q 005123 454 RMPGNFPLPE------GPTTPGPFAPGL-TRNEGTIPGVGVAMPL 491 (713)
Q Consensus 454 ~~~~~~l~~~------~~~rag~~~~gl-gr~~gtv~Gy~~~~al 491 (713)
+..||.+... ...+.|+.+.++ +|..++++||.|+.+|
T Consensus 13 C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l 57 (116)
T 1vyd_A 13 CKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSI 57 (116)
T ss_dssp TTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHH
T ss_pred chhhCCCCCCCCccccccCccCcccccccccccccccccccCHHH
Confidence 4558877654 456789999999 9999999999999877
No 395
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=64.16 E-value=1.6e+02 Score=33.51 Aligned_cols=73 Identities=14% Similarity=0.065 Sum_probs=49.3
Q ss_pred CCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-------CeeEEEEccCCCceEEEEEc-CCCCEEEEEeCCCcEEEEEC
Q 005123 228 KESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-------CQEERSLTGHGWDVKSVDWH-PTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 228 ~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-------~~~~~~l~~h~~~V~sl~~s-pdg~~L~sgs~Dg~I~IwDl 299 (713)
.+.|..+....++.+|+.++..|.|+...+.. +.....+.. .+.+..+... ..+..++..+.+|.+..|+.
T Consensus 553 ~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~-~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~ 631 (716)
T 1zvu_A 553 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPV 631 (716)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEES
T ss_pred CCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCC-CCEEEEEEEecCCCCEEEEEeCCCeEEEEEH
Confidence 45666665555778899999999999988743 222233332 3445555454 34567888999999999987
Q ss_pred CC
Q 005123 300 KS 301 (713)
Q Consensus 300 ~t 301 (713)
..
T Consensus 632 ~~ 633 (716)
T 1zvu_A 632 SD 633 (716)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 396
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=60.90 E-value=1.3e+02 Score=33.61 Aligned_cols=61 Identities=8% Similarity=0.055 Sum_probs=43.4
Q ss_pred CceEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCceEEEEcc-CCCCeEEEEEcCCCCEEEEEE
Q 005123 271 WDVKSVDWHPTKSLLVSGGK------------DSLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTAS 331 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~------------Dg~I~IwDl~t~~~~~~~~~-h~~~I~si~fspdg~~Latgs 331 (713)
.....|.|+++|.+.++... ...|..+|..+++....+.. ....++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34668999999987664432 12577777777776655543 346789999999999888764
No 397
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=56.69 E-value=36 Score=39.03 Aligned_cols=37 Identities=8% Similarity=0.444 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec
Q 005123 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 352 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~ 352 (713)
.|.++.+ +..+|++-+.|.++|+||+++++++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 578999999999999999999998877654
No 398
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.44 E-value=1.7e+02 Score=32.68 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCceEEEEcc-CCCCeEEEEEcCCCCEEEEE
Q 005123 273 VKSVDWHPTKSLLVSGGKD------------SLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTA 330 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~D------------g~I~IwDl~t~~~~~~~~~-h~~~I~si~fspdg~~Latg 330 (713)
.-.|+|++.|+++++-..+ ..+.+.+..+++..+.+.. ....++.++|++|++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4679999999866665432 2356667777776655544 45689999999999988765
No 399
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=53.32 E-value=2.7e+02 Score=30.84 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=79.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeec------------c-------CC----C--CeeEEEEecCCCEEEEEEC---C
Q 005123 198 DNWMVSGDDGGAIKYWQNNMNNVKANKS------------A-------HK----E--SVRDLSFCRTDLKFCSCSD---D 249 (713)
Q Consensus 198 g~~L~sgs~DG~I~vwdl~~~~~~~~~~------------~-------~~----~--~V~~l~fs~dg~~Las~s~---D 249 (713)
...|++|+.||.++.+|.. ++++..+. . |. . .+.++.+...-+.++.++. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3577888889999988876 43322210 0 10 1 1222322211133444432 2
Q ss_pred CeEEEEEcCC---CeeEEEEccC-------CCceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCceEEEEccCC
Q 005123 250 TTVKVWDFAR---CQEERSLTGH-------GWDVKSVDWHPTKSLLVSGGK-------DSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 250 g~I~iwDl~~---~~~~~~l~~h-------~~~V~sl~~spdg~~L~sgs~-------Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
+.++..|+.+ .+.+.++... .-.--.|.-..+++++++-+. ...|+|+|+.++..+.++....
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 3577777754 3444444311 111112333335665444332 3469999999999998875321
Q ss_pred -----CCeEEEEE-cCC--C--CEEEEEECCCeEEEEECCCCe
Q 005123 313 -----NMVLCVKW-NQN--G--NWVLTASKDQIIKLYDIRAMK 345 (713)
Q Consensus 313 -----~~I~si~f-spd--g--~~Latgs~Dg~I~IwDl~t~~ 345 (713)
..+..++. ..| + .++++|...|.|.-+|+....
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred CCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 22334433 223 2 578999999999999997543
No 400
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Probab=51.52 E-value=5.2 Score=35.67 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=31.6
Q ss_pred cCCCCCCCCC------CCCCCCCCCCCc-ccCCCCCCCCCCCCcc
Q 005123 454 RMPGNFPLPE------GPTTPGPFAPGL-TRNEGTIPGVGVAMPL 491 (713)
Q Consensus 454 ~~~~~~l~~~------~~~rag~~~~gl-gr~~gtv~Gy~~~~al 491 (713)
+..||.+... ...+.|+.+.++ +|..+++.||.|+.+|
T Consensus 15 C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l 59 (134)
T 2bh4_X 15 CKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGI 59 (134)
T ss_dssp TTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHH
T ss_pred hHhhcCCcCCCcccccccCCcCCCcccccCccccccccccccHHH
Confidence 5568887765 457889999999 9999999999998766
No 401
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=50.44 E-value=84 Score=35.80 Aligned_cols=144 Identities=7% Similarity=0.011 Sum_probs=77.9
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCcee--eee-ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc---CCC----eeEEE
Q 005123 196 HNDNWMVSGDDGGAIKYWQNNMNNVK--ANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF---ARC----QEERS 265 (713)
Q Consensus 196 pdg~~L~sgs~DG~I~vwdl~~~~~~--~~~-~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl---~~~----~~~~~ 265 (713)
++...+++-+.+|.|+-- .+.-+ ... ....+.+..+..+.....|+.-++.|.++...+ ... +.+..
T Consensus 470 ~~e~v~v~ls~~GyiKr~---~g~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~i~~ 546 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSA---KGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTG 546 (716)
T ss_dssp CCCCCCEEEETTTEEEEC---CC---------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBSTT
T ss_pred CCceEEEEEecCCeEecc---CCCCcCccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccccccCeeHHh
Confidence 345667778888888752 11110 000 112233444444445556666667776554433 221 11111
Q ss_pred Ec--cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceEEEEccCCCCeEEEEEc-CCCCEEEEEECCCe
Q 005123 266 LT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWN-QNGNWVLTASKDQI 335 (713)
Q Consensus 266 l~--~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t-------~~~~~~~~~h~~~I~si~fs-pdg~~Latgs~Dg~ 335 (713)
+- .....|..+....++.+|+.++..|.++...+.. +.....+.. ...+..+... ..+..|+..+.+|.
T Consensus 547 ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~-~d~lv~~~~~~~~~~~v~l~t~~g~ 625 (716)
T 1zvu_A 547 KLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGR 625 (716)
T ss_dssp TSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSE
T ss_pred ccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCC-CCEEEEEEEecCCCCEEEEEeCCCe
Confidence 10 1234566665555677899999999999887643 222223332 3344444444 34567888999999
Q ss_pred EEEEECCC
Q 005123 336 IKLYDIRA 343 (713)
Q Consensus 336 I~IwDl~t 343 (713)
+..|+...
T Consensus 626 ~lrf~~~~ 633 (716)
T 1zvu_A 626 MLMFPVSD 633 (716)
T ss_dssp EEEEESTT
T ss_pred EEEEEHHH
Confidence 99998865
No 402
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=49.38 E-value=3.5e+02 Score=31.00 Aligned_cols=149 Identities=11% Similarity=0.066 Sum_probs=73.1
Q ss_pred CCCceEEEEEccCC-CEEEEEECCCcEEEEeCCCCceEEEEe-c----------cCCCEEEEEEccC-CCEEEEEeCC--
Q 005123 143 NRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQ-A----------HDHAIRSMVWSHN-DNWMVSGDDG-- 207 (713)
Q Consensus 143 H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t~~~~~~l~-~----------h~~~V~sl~~spd-g~~L~sgs~D-- 207 (713)
-.+.|.+|+++|.+ +.++++...|.|+..+-.......... . ....|.+|++++. .+.|+++..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~ 98 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYV 98 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCT
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccc
Confidence 45689999999976 567777766766665532222222211 1 2245899999873 3444444321
Q ss_pred ---CcEEEEEcC-CCceeeeecc-C------CCC--eeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEcc-----
Q 005123 208 ---GAIKYWQNN-MNNVKANKSA-H------KES--VRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTG----- 268 (713)
Q Consensus 208 ---G~I~vwdl~-~~~~~~~~~~-~------~~~--V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~----- 268 (713)
....||... .++.-..+.. . ... ...|++++.. ..++++..++.|.. ....++.-..+..
T Consensus 99 ~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~~~~ 177 (763)
T 3a0f_A 99 QWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLPDSS 177 (763)
T ss_dssp TTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSCCCS
T ss_pred cCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCcccC
Confidence 124444433 3332221111 0 111 1467887643 44555554443332 1122222122211
Q ss_pred -CCCceEEEEEcCC-CCEEEEEeCCC
Q 005123 269 -HGWDVKSVDWHPT-KSLLVSGGKDS 292 (713)
Q Consensus 269 -h~~~V~sl~~spd-g~~L~sgs~Dg 292 (713)
....+..|++++. ...|+++..++
T Consensus 178 ~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 178 TYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCccceEEEEECCCCCCEEEEEEeCC
Confidence 1134778899874 34566666554
No 403
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=44.39 E-value=3.7e+02 Score=29.91 Aligned_cols=161 Identities=15% Similarity=0.159 Sum_probs=86.9
Q ss_pred cCCCceEEEEEcCC--CCEEEEEeCC----CcEEEEECCCCceEEEEccCCC--CeEEEEEcCC--CCEEEEEEC---CC
Q 005123 268 GHGWDVKSVDWHPT--KSLLVSGGKD----SLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQN--GNWVLTASK---DQ 334 (713)
Q Consensus 268 ~h~~~V~sl~~spd--g~~L~sgs~D----g~I~IwDl~t~~~~~~~~~h~~--~I~si~fspd--g~~Latgs~---Dg 334 (713)
+|...+..-.|.|+ +-.++.+.++ .-+.++|.++++.+........ ......|.++ |--+.+... ++
T Consensus 365 gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp~~pG~E~w~~~~~~~~~ 444 (620)
T 2zuy_A 365 GHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPSYKGSLVWGIDPPGNDG 444 (620)
T ss_dssp CCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCTTSSSCEEEEECCTTSCC
T ss_pred CCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCCCCCceEEEEeccccccc
Confidence 57777777778876 4455555554 2477899999999988754333 3333445554 333333321 11
Q ss_pred -eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCCCCceEEEecc---------cCC
Q 005123 335 -IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHETPQVEIHNV---------HDN 399 (713)
Q Consensus 335 -~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~~~~~~~~~~~---------h~~ 399 (713)
.-.||+.+ ++.+.... ....=..|-|.-+-.+.|+-++.+ +.|.-|+...+. ...++.. ...
T Consensus 445 ~~~~l~~~~-G~~i~~~~-p~~~N~~i~WdGDl~re~ld~~~~~~~~~~~i~k~~~~~~~-~~~l~t~~g~~snngTk~~ 521 (620)
T 2zuy_A 445 MSYGLFTSK-GEKISDKA-PSSANFAIWWDGDLVRELLDHDWDGTIGRPKIEKWDAENGC-LKTIFQPAGVLSNNGTKGN 521 (620)
T ss_dssp CEEEEEETT-CCEEESSC-CSCCSEEECCSSSSSCEEEEEEECSSCEEEEEEEEETTTTE-EEEEECCTTEECBSGGGCB
T ss_pred CCCceECCC-CCCccCCC-CCCcceEEEECCCccHhhhCCccccccCCceEEeccCCCCc-eeEEEEeecccccCCCcCC
Confidence 23578865 55554221 112224566766555566665444 567778765443 1222221 112
Q ss_pred CeEEEEEcCCC---cEEEE-eCCcEEEEecCCCCCc
Q 005123 400 TVWDLAWHPIG---YLLCS-NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 400 ~V~~l~~spdg---~~laS-~Dg~v~iWd~~~~~~~ 431 (713)
+.....+..|- .++.+ ++..||||....+.+.
T Consensus 522 P~l~aDi~GDWREEvi~~t~D~~~LrIYtt~~pT~~ 557 (620)
T 2zuy_A 522 PVLQANLFGDWREEVIWRTEDSSALRIYTTTHLTRH 557 (620)
T ss_dssp CSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCSC
T ss_pred cceeecccccCeeeEEEEcCCCCeEEEEeCCCCCCC
Confidence 33333444443 33345 5566999987666443
No 404
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1
Probab=44.25 E-value=8 Score=34.48 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=31.2
Q ss_pred cCCCCCCCCC-----CCCCCCCCCCCc-ccCCCCCCCCCCCCcc
Q 005123 454 RMPGNFPLPE-----GPTTPGPFAPGL-TRNEGTIPGVGVAMPL 491 (713)
Q Consensus 454 ~~~~~~l~~~-----~~~rag~~~~gl-gr~~gtv~Gy~~~~al 491 (713)
+..||.+... ...+.|+.+.++ +|..+++.||.|+.+|
T Consensus 16 CaaCH~~~~~~g~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l 59 (135)
T 155c_A 16 CKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGI 59 (135)
T ss_dssp TTTTEECCCSSSCSSCCCSSEEECSSCTTSCTTCSSSSCCCHHH
T ss_pred HHHhcCCCCCCCccccCCCCCCCcccccCccccccccccchHHH
Confidence 5568887755 446778999998 9999999999998777
No 405
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=43.41 E-value=59 Score=36.45 Aligned_cols=59 Identities=10% Similarity=0.145 Sum_probs=43.2
Q ss_pred ceEEEEEccCCCEEEEEECC------------CcEEEEeCCCCceEEEEecc-CCCEEEEEEccCCCEEEEE
Q 005123 146 SINRVLWTPTGRRLITGSQS------------GEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSG 204 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~d------------g~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~spdg~~L~sg 204 (713)
..-.|+|+++|+++++-..+ ..+.+.+..++++.+.+... ...++.++|++|++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678899999866554322 23566677778877777665 4679999999999988775
No 406
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=41.50 E-value=89 Score=34.82 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=45.0
Q ss_pred CceEEEEEccCCCEEEEEEC------------CCcEEEEeCCCCceEEEEecc-CCCEEEEEEccCCCEEEEEe
Q 005123 145 CSINRVLWTPTGRRLITGSQ------------SGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGD 205 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~------------dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~spdg~~L~sgs 205 (713)
+....|+|.++|.+.++... ...|+.++..++++...+... ...++.++|++|++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 56788999999987763321 125777787778877666543 45789999999999888763
No 407
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=37.41 E-value=4.6e+02 Score=28.97 Aligned_cols=148 Identities=11% Similarity=0.121 Sum_probs=83.8
Q ss_pred CCEEEEEECCCeEEEEEcCCCeeEEEEc------------c-------CC----C--ceEEEEEcCCCCEEEEEeC---C
Q 005123 240 DLKFCSCSDDTTVKVWDFARCQEERSLT------------G-------HG----W--DVKSVDWHPTKSLLVSGGK---D 291 (713)
Q Consensus 240 g~~Las~s~Dg~I~iwDl~~~~~~~~l~------------~-------h~----~--~V~sl~~spdg~~L~sgs~---D 291 (713)
...+++++.||.++.+|.. ++++..+. . |. . .+..+.+...-+.+++++. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 4578889999999999876 55443321 0 10 1 1233433322234444442 2
Q ss_pred CcEEEEECCC---CceEEEEccCC-------CCeEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCeeEEEeecCC
Q 005123 292 SLVKLWDAKS---GRELCSFHGHK-------NMVLCVKWNQNGNWVLTASK-------DQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 292 g~I~IwDl~t---~~~~~~~~~h~-------~~I~si~fspdg~~Latgs~-------Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
..++..|+.+ .+.+.++.... -.--.|..-.+++++++-+. ...|+|+|+.+++.+..+....
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 2467777765 34444544111 11112333346777664332 3479999999999988875322
Q ss_pred -----CCeEEEEEeCCCC----CEEEEEECCCcEEEEEcCCCC
Q 005123 355 -----KDVTALAWHPFHE----EYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 355 -----~~V~sl~fsp~~~----~~lasgs~DG~I~Iwd~~~~~ 388 (713)
..+..++....++ +++.++...|.|.-+|+....
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred CCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 2244444332122 478999999999999986543
No 408
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A*
Probab=36.39 E-value=3.3e+02 Score=26.95 Aligned_cols=99 Identities=10% Similarity=0.117 Sum_probs=45.7
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcCCCceeeee
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~s-gs~DG~I~vwdl~~~~~~~~~ 224 (713)
...++-|-+++++++.. ... .||-......+....++... .+.++.+|++++. ...++. .||.........
T Consensus 34 g~F~lgf~~~~~~~ly~--~~~-vvW~Anr~~p~~~~~~~~~~--~l~l~~~G~Lvl~~~~~~~~-~vWst~~~~~~~-- 105 (276)
T 3m7h_A 34 QRFKLLLQGDGNLVIQD--NGA-TVWVANEQQPFSSTIPLRNK--KAPLAFYVQYGAFLDDYSRR-RVWLTDNSTFTS-- 105 (276)
T ss_dssp SSEEEEECTTSCEEEEE--TTE-EEEECSTTSTTEEEEECCCT--TCCSEEEESSSEEEEEGGGT-EEEEECCCCCCC--
T ss_pred CcEEEEEECCCCeEEEC--CCC-eEEECCCCCCcCCcccccce--EEEEeCCCcEEEEEeCCCCC-EEEEeCCCcccc--
Confidence 34555555665544432 233 67866554433221111111 1334456666553 333344 377654321000
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
........+.+..+|++++.. .-.+|.-
T Consensus 106 -~~~~~~~~a~L~d~GNlVl~~----~~~lWqS 133 (276)
T 3m7h_A 106 -NDQWNRTHLVLQDDGNIVLVD----SLALWNG 133 (276)
T ss_dssp -TTHHHHEEEEECTTSCEEEEE----EEEEEES
T ss_pred -cccCCceEEEEeCCCCEEecC----CceeeCc
Confidence 000123456667778876663 3457864
No 409
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*
Probab=36.30 E-value=15 Score=32.06 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=30.1
Q ss_pred cCCCCCCCCC-------CCCCCCCCCCCc-ccCCCCCCCC-CCCCcc
Q 005123 454 RMPGNFPLPE-------GPTTPGPFAPGL-TRNEGTIPGV-GVAMPL 491 (713)
Q Consensus 454 ~~~~~~l~~~-------~~~rag~~~~gl-gr~~gtv~Gy-~~~~al 491 (713)
+..||.+... ...+.|+.+.++ +|..+++.|| .|+.+|
T Consensus 15 C~~CH~v~~~~g~~~~g~~~~vGP~L~gv~~r~~~~~~g~~~ys~~l 61 (124)
T 1cxc_A 15 CQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGM 61 (124)
T ss_dssp GGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHH
T ss_pred hhhhcCCCCccccccccCCCCCCCCCcCccCCcccccccHHHhhHHH
Confidence 4558877652 346789999998 9999999999 888776
No 410
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=35.59 E-value=53 Score=37.63 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=31.3
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA 184 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~ 184 (713)
..|.|+.+ +..+|++-+.|.++|+||++++.++.....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45666655 477999999999999999999998877665
No 411
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*
Probab=33.21 E-value=24 Score=31.54 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=31.4
Q ss_pred eecCCCCCCCCCCCCCCCCCCCCc-ccCCCCCCCCCCCCccc
Q 005123 452 AGRMPGNFPLPEGPTTPGPFAPGL-TRNEGTIPGVGVAMPLS 492 (713)
Q Consensus 452 ~~~~~~~~l~~~~~~rag~~~~gl-gr~~gtv~Gy~~~~al~ 492 (713)
..+..||.. +...+.|+.+.++ +|..+++.||.|+.+|.
T Consensus 52 ~~C~~CH~~--~~~~~~gP~L~gv~~r~~~~~~g~~Ys~al~ 91 (140)
T 3m97_X 52 GKCKACHKL--DGNDGVGPHLNGVVGRTVAGVDGFNYSDPMK 91 (140)
T ss_dssp GGTTTTCCS--SSCCSSSCCCTTCTTCBTTCSTTCCCCHHHH
T ss_pred HhhhhhcCC--CCCCCcCCCccccccccccccccccccHhhh
Confidence 455669987 4456789999999 99999999999987763
No 412
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A*
Probab=32.64 E-value=5.1e+02 Score=28.06 Aligned_cols=49 Identities=14% Similarity=-0.043 Sum_probs=25.5
Q ss_pred EEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEE
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKF 422 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~i 422 (713)
.+++...||.|..+.-....-.+++.. .+.| +|.- +|.+|.+ .+|.++.
T Consensus 431 KYwtv~~dG~l~a~~~~~e~F~~E~~~--~g~v-~ika--NGkYl~ad~~G~L~A 480 (493)
T 3llp_A 431 KYWTVGSDSAVTSSGDTPVDFFFEFCD--YNKV-AIKV--GGRYLKGDHAGVLKA 480 (493)
T ss_dssp CEEEECTTSBEEEEESSCCCBEEEEET--TTEE-EEEE--TTEEEEECTTSBEEE
T ss_pred CEEEEeCCCcEEECCCCcceEEEEEeC--CCeE-EEEe--CCEEEEEcCCCcEEE
Confidence 355556677777766543222222222 2222 3442 8888877 5555554
No 413
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=30.38 E-value=2.4e+02 Score=23.59 Aligned_cols=26 Identities=8% Similarity=-0.121 Sum_probs=13.8
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEEcCC
Q 005123 232 RDLSFCRTDLKFCSCSDDTTVKVWDFAR 259 (713)
Q Consensus 232 ~~l~fs~dg~~Las~s~Dg~I~iwDl~~ 259 (713)
..+.+..+|++++.. .++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d-~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITD-DRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEEC-TTSCE-EEECSC
T ss_pred EEEEEeCCCcEEEEC-CCCCE-EEECCC
Confidence 345666677665543 23433 676543
No 414
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=30.15 E-value=2.2e+02 Score=23.83 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=23.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEE
Q 005123 191 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256 (713)
Q Consensus 191 sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwD 256 (713)
.+.+..||++++... ++ +|...+.. ...-..+.+..+|++++.. .++.+.+|.
T Consensus 23 ~L~~q~dGnLvl~~~-~~---vW~snt~~--------~~~~~~l~l~~dGNLVl~~-~~~~~~vW~ 75 (111)
T 3mez_A 23 AFVMQGDCNLVLYNE-AG---GFQSNTHG--------RGVDCTLRLNNRGQLEIHS-ANSNTPVWV 75 (111)
T ss_dssp EEEECTTSCEEEECS-SC---CEECCCTT--------SCSSCEEEECTTSCEEEEC-SSCSSCSEE
T ss_pred EEEEccCCeEEEECC-CC---EEECCccc--------CCcCEEEEEcCCCcEEEEe-CCCCEEEEE
Confidence 445555666655322 22 66544321 1111345556666654442 233334554
No 415
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=29.68 E-value=6.2e+02 Score=28.15 Aligned_cols=55 Identities=18% Similarity=0.130 Sum_probs=35.7
Q ss_pred cCCCCeEEEEEcCC--CCEEEEEECC----CeEEEEECCCCeeEEEeecCC--CCeEEEEEeC
Q 005123 310 GHKNMVLCVKWNQN--GNWVLTASKD----QIIKLYDIRAMKELESFRGHR--KDVTALAWHP 364 (713)
Q Consensus 310 ~h~~~I~si~fspd--g~~Latgs~D----g~I~IwDl~t~~~l~~~~~h~--~~V~sl~fsp 364 (713)
+|...+....|.|+ |-.++.+.++ .-+.++|.++++.+....... +......|.|
T Consensus 365 gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp 427 (620)
T 2zuy_A 365 GHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDP 427 (620)
T ss_dssp CCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCT
T ss_pred CCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCC
Confidence 57777777778886 4555565554 256789999999998775433 3333444544
No 416
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=29.62 E-value=1.6e+02 Score=24.72 Aligned_cols=23 Identities=4% Similarity=0.234 Sum_probs=11.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEE
Q 005123 191 SMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 191 sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
.+.+..+|++++... ++.+.+|.
T Consensus 53 ~l~l~~dGNLVl~~~-~~~~~vW~ 75 (111)
T 3mez_A 53 TLRLNNRGQLEIHSA-NSNTPVWV 75 (111)
T ss_dssp EEEECTTSCEEEECS-SCSSCSEE
T ss_pred EEEEcCCCcEEEEeC-CCCEEEEE
Confidence 455666666655432 33334664
No 417
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=29.00 E-value=4.6e+02 Score=26.44 Aligned_cols=108 Identities=6% Similarity=0.127 Sum_probs=47.9
Q ss_pred CCCEEEEEEccCC---CEEEEEeCCCcEE--EEEcCCCceeeee------ccCCCCeeEEEEecC---CCEE--EEE---
Q 005123 186 DHAIRSMVWSHND---NWMVSGDDGGAIK--YWQNNMNNVKANK------SAHKESVRDLSFCRT---DLKF--CSC--- 246 (713)
Q Consensus 186 ~~~V~sl~~spdg---~~L~sgs~DG~I~--vwdl~~~~~~~~~------~~~~~~V~~l~fs~d---g~~L--as~--- 246 (713)
.+.+.++.|..++ -.|+.-+.|+.|. +|+-..-. ...+ ......+.+++|..+ ...| +.-
T Consensus 60 ~SplAAv~~~~~~~~~i~Vfy~~~dn~l~e~~~~~~~W~-~g~L~~~~~~~~~~S~lAAvs~~~~~~~~~~i~Vf~q~~~ 138 (312)
T 1ofz_A 60 FSPLAAVTWKSAQGIQIRVYCVNKDNILSEFVYDGSKWI-TGQLGSVGVKVGSNSKLAALQWGGSESAPPNIRVYYQKSN 138 (312)
T ss_dssp TCCCEEEEEEETTEEEEEEEEECTTCBEEEEEEESSCEE-ECGGGGGCCBCCTTCCCEEEEESCBTTBCCEEEEEECSCC
T ss_pred CCCceEEEecCCCCCEEEEEEECCCCcEEEEEecCCCcc-ccccCCcccccCCCCcceEEEecCCCCCCCeEEEEEEecc
Confidence 4566777774322 2345556677664 34431101 0011 123556777777533 2233 222
Q ss_pred ECCCeEEE--EEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 247 SDDTTVKV--WDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 247 s~Dg~I~i--wDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
..|+.|.. ||-. -..-..+. .....+.++.|.++.-.|+..+.|+.|.
T Consensus 139 ~~dn~I~e~~~~g~-W~~~~~lg~~~~gT~laa~s~~~~~i~vf~q~~dn~i~ 190 (312)
T 1ofz_A 139 LSGSSIHEYVWSGK-WTAGASFGSTAPGTGIGATAIGPGRLRIYYQATDNKIR 190 (312)
T ss_dssp STTEEEEEEEESSS-EEEEEEEEEESTTCCEEEEEEETTEEEEEEEBTTSEEE
T ss_pred CCCCeEEEEEccCC-cccCCCcCCccCCCCcceeecCCCCEEEEEEcCCCcEE
Confidence 34555533 3321 11111111 1224566777765433445555666663
No 418
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=28.98 E-value=6.9e+02 Score=28.44 Aligned_cols=232 Identities=9% Similarity=-0.028 Sum_probs=105.0
Q ss_pred ceEEEEEccCC--CEEEEEECC---------CcEEEEeCCCCceEEEEecc-----CCCEEEEEEccCCC-EEEEEeC--
Q 005123 146 SINRVLWTPTG--RRLITGSQS---------GEFTLWNGQSFNFEMILQAH-----DHAIRSMVWSHNDN-WMVSGDD-- 206 (713)
Q Consensus 146 ~V~~v~~spdg--~~Latgs~d---------g~V~Iwd~~t~~~~~~l~~h-----~~~V~sl~~spdg~-~L~sgs~-- 206 (713)
.+..++|++.. ..++++..| +.|.+-+ ..++.-..+... ...+..+++++++. .+.+++.
T Consensus 488 ~~~~i~~a~~~~~~~~~vG~~d~~~~~~~~~g~i~~S~-DgG~tW~~~~~~~~g~~~~~~~~i~v~~~~~~~~~~~~~~~ 566 (763)
T 3a0f_A 488 STDGLDFAGRAANVLARVGRNDHPDAGVAGCTQGAYTT-NSGDSWTLFQTCVPSLEVGNGGTIAVGADGKTFVWSPSKAD 566 (763)
T ss_dssp EEEEEEEETTEEEEEEEEEECSSCCTTCCSCTTEEEES-STTSSCEECSSCCTTCBTTBCCEEEECTTSSCEEEECSSCC
T ss_pred cccceEeccCCCcEEEEEeCCCcccccccCCCcEEEEC-CCCcCCccCCCCCcccccCCcceEEEecCCCcEEEEecccC
Confidence 46788888753 355566664 6665543 333322222211 13466777777664 4555552
Q ss_pred CCcEEEEEcCCCceeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEEc-cC----CCceEEEEEcC
Q 005123 207 GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLT-GH----GWDVKSVDWHP 280 (713)
Q Consensus 207 DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h----~~~V~sl~~sp 280 (713)
++.|. ...+.++.-..+......+..+..++. .+.|+++ .++.|.+- ...++.-..+. .. ..... |.+++
T Consensus 567 ~~~v~-~S~D~G~tW~~~~~l~~~~~~i~~d~~~~~~~y~g-~~g~v~~S-~DgG~tW~~~~~~lp~~~~~~~~-i~~~~ 642 (763)
T 3a0f_A 567 GKGPY-TSSDYGKTWTAPSGLSKQTTGIAADRVQANTFYVY-VEGDFFVS-TDGGKSYTKKGNGLPCCWTYTGT-PVTSN 642 (763)
T ss_dssp SSCCE-EESSTTSCCBCCBSCCCCCSCEEECSSSTTCEEEE-ETTEEEEE-SSTTSBCEEECBTSCCSSCCCEE-EEECS
T ss_pred CCceE-EeCCCCCCCeecCCCCCCcceEEEeccCCCEEEEE-cCCCEEEE-eCCCcCccccccCCCcccCcccc-EEECC
Confidence 44332 222333322222222222345666653 3455555 45655542 23333222221 11 11222 67776
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCceEEEEccCC-CCe-EEEEEc-----CCCCEEEEEE-----CCCeEEEEECCCCeeE
Q 005123 281 -TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-NMV-LCVKWN-----QNGNWVLTAS-----KDQIIKLYDIRAMKEL 347 (713)
Q Consensus 281 -dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-~~I-~si~fs-----pdg~~Latgs-----~Dg~I~IwDl~t~~~l 347 (713)
+...|+++...+.|.. ..+.++.-..+.... ... ..+.|. .+...|++.+ .++.|+. ..+.++.-
T Consensus 643 ~~~~~l~~~~~~~~l~~-S~D~G~tW~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~G~~~~~~~~gl~~-S~D~G~tW 720 (763)
T 3a0f_A 643 LRAGELWVSVKGVGIYH-STDFGNTFTALAGSGSSLNPAVFSIGAPQTPNATETLFLWGIPSASQPEGLYM-STDNGGLW 720 (763)
T ss_dssp SSTTCEEEEETTTEEEE-ESSTTSBCEECTTBTTTBEEEEEEEECCSSTTSSCEEEEEEECSTTSCSEEEE-ESSTTSCC
T ss_pred CCCCcEEEEcCCCeEEE-EcCCCCCceEccCCCcccccceeEEeeecCCCCCceEEEEEEcccCCCcEEEE-eCCCCCCc
Confidence 3334444555444332 223345544444222 111 013331 1233444433 3333322 22334433
Q ss_pred EEeec--CC-CCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 348 ESFRG--HR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 348 ~~~~~--h~-~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
..+.. |. ..+..|+.++.+...|+.+...+-|.+-++
T Consensus 721 ~~~~~~~~~~~~~~~i~~~p~~~~~v~~~T~GrGi~~g~~ 760 (763)
T 3a0f_A 721 TRLNDDAHNYGGATVISGDPRIYGRVYIGMNGRGIICAQA 760 (763)
T ss_dssp EECSCTTCCTBCEEEEEECTTSTTEEEEEEBSSCEEEEES
T ss_pred EeccCccccCCCcceEEeCCCCCCEEEEeCCCCeEEEEec
Confidence 33331 22 335588888855566777777767776665
No 419
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Probab=27.24 E-value=41 Score=28.16 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=30.7
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCc-ccCCCCCCCCCCCCcc
Q 005123 453 GRMPGNFPLPEGPTTPGPFAPGL-TRNEGTIPGVGVAMPL 491 (713)
Q Consensus 453 ~~~~~~~l~~~~~~rag~~~~gl-gr~~gtv~Gy~~~~al 491 (713)
.+..||..........++.+.++ +|..+++.||.|+.+|
T Consensus 13 ~Ca~CH~~~g~g~~~~gP~L~gi~~r~~~~~~~~~y~~~~ 52 (112)
T 3c2c_A 13 KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESY 52 (112)
T ss_dssp GGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHH
T ss_pred hHHhhCCCCCCCCCCCCCCcccccCCcccccccccccHHH
Confidence 34558887765556778999998 9999999999988665
No 420
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=23.82 E-value=48 Score=29.15 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=29.3
Q ss_pred ecCCCCCCCCC------CCCCCCCCCCCc-ccCCCCCCCCCCCCcc
Q 005123 453 GRMPGNFPLPE------GPTTPGPFAPGL-TRNEGTIPGVGVAMPL 491 (713)
Q Consensus 453 ~~~~~~~l~~~------~~~rag~~~~gl-gr~~gtv~Gy~~~~al 491 (713)
.+..||..... .....|+.+.++ +|..|.++||.|+.++
T Consensus 33 ~C~~CH~~~~~~G~~~~~~~~~gP~L~~i~~r~~g~~~~~~ys~~l 78 (137)
T 1c2n_A 33 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSI 78 (137)
T ss_dssp HHTTTCCBCCTTSCCSBCCCCSSCCCTTCTTSCSSCCSSCCCCHHH
T ss_pred hHHhhCCCCCCCccccccccCCCcchhcccccccCCCCcccccHHH
Confidence 34558876643 245678888888 9999999999997655
No 421
>4ftd_A Uncharacterized protein; 6-bladed-beta-propeller, immunoglobulin-like, carbohydrate metabolism, structural genomics; 1.91A {Bacteroides eggerthii}
Probab=23.21 E-value=7e+02 Score=26.57 Aligned_cols=198 Identities=12% Similarity=0.013 Sum_probs=0.0
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeC----------CCCceEEEEeccCCC--EEEEEEccCCCEEE---EEeCCCcEE
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNG----------QSFNFEMILQAHDHA--IRSMVWSHNDNWMV---SGDDGGAIK 211 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~----------~t~~~~~~l~~h~~~--V~sl~~spdg~~L~---sgs~DG~I~ 211 (713)
.+|..|..+. .++....+..++.||- ..........+-.+. +.++.-..++..++ ++...+.++
T Consensus 138 trG~~~~s~~-V~v~~r~~~~v~~~dHll~~~~~~ag~~~~~~l~~TGvsGgtf~~~m~a~~~G~Iy~anLsg~~gs~fk 216 (453)
T 4ftd_A 138 TRCASYDGEH-VLVVSRPTTPNFHTPHLLKVSDLKRGEIKPIMLDVTGVKGGTYDYNMGALINGHVYLSSLSGGKVSPFK 216 (453)
T ss_dssp EEEEEECSSE-EEEEECCCTTTCCCSEEEEHHHHHTTCCCCEECCCTTCCCSSEEEEEEEEETTEEEEEEEBCSTTSCEE
T ss_pred ccccccCCce-EEEEecCCceEEecccccchhhcccCcccccccccceeeccceEEEEEEecCCCEEEEeccCCCCCceE
Q ss_pred EEEcCCC----ceeeeec--------cCCCCeeEEEEecCCCEEEEEECCC--eEEEEEcCCCee-------EEEEccCC
Q 005123 212 YWQNNMN----NVKANKS--------AHKESVRDLSFCRTDLKFCSCSDDT--TVKVWDFARCQE-------ERSLTGHG 270 (713)
Q Consensus 212 vwdl~~~----~~~~~~~--------~~~~~V~~l~fs~dg~~Las~s~Dg--~I~iwDl~~~~~-------~~~l~~h~ 270 (713)
||.+.+. +++..+. ..-+.-.++.-..+++-+++....+ .+..|.+..+.. +....+..
T Consensus 217 IYrW~~~ts~Pe~i~s~~v~~~~gTg~R~Gd~isv~GD~~gNa~I~~~~n~s~~~~rwtVtng~l~~~~~~~v~~~~~~g 296 (453)
T 4ftd_A 217 IYYWETPTSNPEVIANINVGNIPGAGNRHGDNASYNIDENGNGFIFFGDNAATEFLKVPISGHKTVDIGNIKVLPSKSDA 296 (453)
T ss_dssp EEEESSTTSCCEEEEEECGGGSTTCCSCBCSCCEEEECTTSCEEEEEEBTTSSEEEEEEEETTTEECGGGCEEEECCGGG
T ss_pred EEEeCCCCCCceeEEEeccccCCcccccccceEEEEEcCCCCEEEEECCCCceeEEEEEEECCeEcCCCCceeeccCCCc
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE--------CCCeEEEEECC
Q 005123 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--------KDQIIKLYDIR 342 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs--------~Dg~I~IwDl~ 342 (713)
.....+.+--+-.+.+..+.+-.+.+++.........-.+....-..+.--...++|++++ .+..|+|||+.
T Consensus 297 ~~~~~v~~~gnT~~y~~sg~~~p~~Ly~~~g~~~~~sai~~~a~~~~vv~FN~~rYLi~~~~~~~g~~~~~~~l~vYDIS 376 (453)
T 4ftd_A 297 TMVTNVYRVGDTDQYLWSGIRVPVTLVDESLGEKYKSKIAGEAVAPKVVTFNEERYLLVCTAGQGAASKASIALEVYDLT 376 (453)
T ss_dssp CSSEEEEECTTSSCEEEEETTEEEEEECTTCCEEEECSCCTTEEEEEEEEETTEEEEEEEECCBSTTCCCCCEEEEEECC
T ss_pred eeeeeeEEcCcccceeeccccCceeEEecCCCEEEeeeccccCCCcceEEEccccEEEEEEecccCccCCCceEEEEECC
Q ss_pred CCe
Q 005123 343 AMK 345 (713)
Q Consensus 343 t~~ 345 (713)
++.
T Consensus 377 ~g~ 379 (453)
T 4ftd_A 377 KGE 379 (453)
T ss_dssp SSS
T ss_pred CCc
No 422
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=22.72 E-value=7.2e+02 Score=26.49 Aligned_cols=158 Identities=9% Similarity=0.127 Sum_probs=0.0
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCC------ceee-----eeccCCCCeeEEEEecC--------CCEEEEEECCC
Q 005123 190 RSMVWSHNDNWMVSGDDGGAIKYWQNNMN------NVKA-----NKSAHKESVRDLSFCRT--------DLKFCSCSDDT 250 (713)
Q Consensus 190 ~sl~~spdg~~L~sgs~DG~I~vwdl~~~------~~~~-----~~~~~~~~V~~l~fs~d--------g~~Las~s~Dg 250 (713)
....++ +..+.++.+. ..+.||+.... -+.. .-..+.....++.+... .--+++.+-+|
T Consensus 41 ~sg~i~-~~GyAlvv~~-~~l~VW~y~~~~~~~~~~c~~lpLp~sd~~~~~~lvsi~~~~~~~~~~s~~~pGlliVsptG 118 (450)
T 1xks_A 41 LTINID-EGGWACLVCK-EKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATREG 118 (450)
T ss_dssp EEEEEC-TTSEEEEEET-TEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGGGEEEEECC-------CTTEEEEEECTTC
T ss_pred eEEEEC-CCcEEEEEeC-CeEEEEeecCCCCCCcccceeccCCccccccCCcEEEEEcCCCccccccCCCceEEEEcCCc
Q ss_pred eEEEEEcCCC--eeEEEEccCCC-ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCe------------
Q 005123 251 TVKVWDFARC--QEERSLTGHGW-DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV------------ 315 (713)
Q Consensus 251 ~I~iwDl~~~--~~~~~l~~h~~-~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I------------ 315 (713)
.|+.|.--.. +.+...-...+ .........+..-++.+..-|++....++ |+.....+......
T Consensus 119 ~VryWesIs~~~~~~ei~~~L~~~E~vt~l~n~epaGfIlaTStgrl~~lsir-Gkp~l~~~~l~~~~G~l~gi~~~~sS 197 (450)
T 1xks_A 119 SIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIPE-SSGKIHQHILPQGQGMLSGIGRKVSS 197 (450)
T ss_dssp EEEEESCTTCTTCCEEEECC----CCEEEEEEETTTEEEEEETTCCEEEEEEC-TTSCEEEEECTTCCCC----------
T ss_pred cEEEccccCCCCceEEEEecCCCCceEEEEeecCCceEEEEeccceEEEEEec-CCceEEEEEecCCCcccccccccccc
Q ss_pred -------------EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 316 -------------LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 316 -------------~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
.++.+...++.|++.+..+ +.+||+.++.....+.
T Consensus 198 l~G~~s~~~~ia~v~~~~~~g~r~v~ilT~~~-lq~W~l~~~~e~~~~~ 245 (450)
T 1xks_A 198 LFGILSPSSDLTLSSVLWDRERSSFYSLTSSN-ISKWELDDSSEKHAYS 245 (450)
T ss_dssp --------CCCCEEEEEEETTTTEEEEEESSE-EEEEEECSSCEEEEEE
T ss_pred cccccCCCcceEEEEeccCCCcEEEEEEcCCc-eEEEEecCCCceEEEe
No 423
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A*
Probab=22.35 E-value=7.6e+02 Score=26.66 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=10.6
Q ss_pred CCCCEEEEEeCCCcEEEE
Q 005123 280 PTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~Iw 297 (713)
.+|++|..-+.++.|.+-
T Consensus 226 ~~GkYL~~~g~~g~L~~~ 243 (493)
T 3llp_A 226 CEGRYLAPSGPSGTLKAG 243 (493)
T ss_dssp TTSCBEEEETTTTEEEEC
T ss_pred CCCCEEeEECCCCeEEec
Confidence 356666665546666653
No 424
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=22.31 E-value=8.1e+02 Score=26.99 Aligned_cols=39 Identities=15% Similarity=0.017 Sum_probs=25.7
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC
Q 005123 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG 270 (713)
Q Consensus 231 V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~ 270 (713)
|+++.+...+..++.+++...|...|. +++.+..+.++.
T Consensus 357 iNsv~~d~~dd~~liSsR~~~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 357 VNSIAYDAKDDSIILSSRHQGVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEET-TSCEEEEESCST
T ss_pred ecceeEcCCCCEEEEECCccEEEEEcC-CCcEEEEECCCC
Confidence 888998875544444444447777775 777777776554
No 425
>1c3k_A Agglutinin; beta prism, jacalin-related, mannose, sugar BIND protein; 2.00A {Helianthus tuberosus} SCOP: b.77.3.1 PDB: 1c3m_A* 1c3n_A*
Probab=21.95 E-value=4.1e+02 Score=23.38 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=36.6
Q ss_pred CCeEEEEEc---CCCCEEEE---EECCCeEEEEECCCCeeEEEeecCC------CCeEEEEEeCCCCCEEEEEECCCcEE
Q 005123 313 NMVLCVKWN---QNGNWVLT---ASKDQIIKLYDIRAMKELESFRGHR------KDVTALAWHPFHEEYFVSGSLDGSIF 380 (713)
Q Consensus 313 ~~I~si~fs---pdg~~Lat---gs~Dg~I~IwDl~t~~~l~~~~~h~------~~V~sl~fsp~~~~~lasgs~DG~I~ 380 (713)
..|.+|.|. .+++.+.+ |...+...-+.+...+.+..+.++. ..|++|.|.-..+++...|...|+-.
T Consensus 39 ~~I~~i~f~Y~d~~G~~~~~~~~G~~gg~~~~~~L~p~E~it~vsg~~g~~~g~~~I~sL~f~Tn~~~~~~fG~~~g~~f 118 (147)
T 1c3k_A 39 TCIFSIQFVYKDKDNIEYHSGKFGVLGDKAETITFAEDEDITAISGTFGAYYHMTVVTSLTFQTNKKVYGPFGTVASSSF 118 (147)
T ss_dssp SSEEEEEEEEECTTCCEEEEEEESCCCCCCEEEECCTTCCEEEEEEEEEESSSSEEEEEEEEEESSCEEEEEECCCSEEE
T ss_pred CEEEEEEEEEECCCCCEEECcccCCCCCceEEEEeCCCCcEEEEEEEEcccCCccEEEEEEEEECCCceeCCcCCCCcEE
Confidence 456666553 24443321 2233444555565566555554432 35778888764455555565555443
Q ss_pred EEEc
Q 005123 381 HWLV 384 (713)
Q Consensus 381 Iwd~ 384 (713)
....
T Consensus 119 ~~~~ 122 (147)
T 1c3k_A 119 SLPL 122 (147)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 3333
No 426
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A*
Probab=20.10 E-value=3.8e+02 Score=22.29 Aligned_cols=56 Identities=11% Similarity=0.189 Sum_probs=26.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
..+.|..++++++.- +.-.+|...+... ..-..+.+..+|++++.. .++. .+|...
T Consensus 22 ~~L~~~~dgnlvly~---~~~~vW~sn~~~~--------~~~~~l~l~~~GnLvl~d-~~~~-~vW~S~ 77 (115)
T 2dpf_A 22 YTLTIQNKCNLVKYQ---NGRQIWASNTDRR--------GSGCRLTLLSDGNLVIYD-HNNN-DVWGSA 77 (115)
T ss_dssp EEEEECTTSCEEEEE---TTEEEEECSCTTS--------CSSCEEEECTTSCEEEEC-TTCC-EEEECC
T ss_pred EEEEEcCCCcEEEEe---CCEEEEeCCCCCC--------CCceEEEECCCCcEEEEC-CCce-EEEEcC
Confidence 345555566554432 2334666543211 112345677777766553 2333 466544
No 427
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=20.09 E-value=3e+02 Score=22.98 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=16.2
Q ss_pred EEEEEcCCCcEEEE-eCCcEEEEecCCC
Q 005123 402 WDLAWHPIGYLLCS-NDHTTKFWCRNRP 428 (713)
Q Consensus 402 ~~l~~spdg~~laS-~Dg~v~iWd~~~~ 428 (713)
..+.+..+|.++.. .++. .+|.-+..
T Consensus 59 ~~l~l~~dGNLVl~d~~~~-~iW~S~t~ 85 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLN-TVFVSNTV 85 (113)
T ss_dssp CEEEECTTSCEEEECTTSC-EEEECSCC
T ss_pred EEEEEeCCCcEEEECCCCC-EEEECCCc
Confidence 45677788877765 3444 37876543
Done!