BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005125
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECK 317
+ E LK GNE FE A+ Y +AI +N + A Y N++AA LG A+ +C+
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 318 EAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
AI IDP Y +A+ R+ + L + +AV++YKK+ L
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556
+ GN K ++ A + Y + +E N+V CNRAA SKLG Y AV+DC A+ +
Sbjct: 16 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75
Query: 557 MPSYSKA 563
P+YSKA
Sbjct: 76 DPAYSKA 82
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
+ELK GN + ++ +A A Y RAI N A Y +N++ + + + +AL +C+ A
Sbjct: 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 69
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379
+ +D +AH L + ++A+++ +++ SLA ++ + + + L +
Sbjct: 70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK-- 127
Query: 380 ELKRWNDL 387
KRWN +
Sbjct: 128 --KRWNSI 133
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554
+GN LF KY EA Y + +V NRA C K+ Q E+A+ DC AL
Sbjct: 15 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
+ELK GN + ++ +A A Y RAI N A Y +N++ + + + +AL +C+ A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379
+ +D +AH L + ++A+++ +++ SLA ++ + + + L +
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK-- 122
Query: 380 ELKRWNDL 387
KRWN +
Sbjct: 123 --KRWNSI 128
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554
+GN LF KY EA Y + +V NRA C K+ Q E+A+ DC AL
Sbjct: 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 65
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 22/104 (21%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDC-------- 550
+GN FK Y A Y+E ++ + N++L NRAAC +KL ++++A++DC
Sbjct: 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78
Query: 551 ---------TAALIVMPSYSKARLEAAIQDYEMLIREIPGNEEV 585
A L+ M +SKA+ + YE ++ P NEE
Sbjct: 79 KFIKGYIRKAACLVAMREWSKAQ-----RAYEDALQVDPSNEEA 117
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 252 SSLNKLDPE---ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGR 308
+ L ++PE E K GNE + K + A+ Y+ A+ + A SN++A L L
Sbjct: 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62
Query: 309 QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353
AL +C IR+D + + + R A + E KA Y+ +
Sbjct: 63 FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDA 107
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488
I +A +A + A + +DA Q+DP+N+E +GV+
Sbjct: 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559
GN +Y +A Y++ L N + L NRAA S GQ+EKA ED A +V P
Sbjct: 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77
Query: 560 YSKARLEAAIQDYEM 574
YSKA + ++M
Sbjct: 78 YSKAWSRLGLARFDM 92
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
++LK GN A + + A+ LY +A++I + Y SN++AA G+ +A + + A
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA 71
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
+DP Y +A RL + F + + + A Y+K
Sbjct: 72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEK 104
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 433 CLEYYTKLFGLA-GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491
++ YT+ +A L RA Y A+G+ E A + A+ A +DP + + +A+
Sbjct: 30 AIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89
Query: 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHE 523
F + YK A AY +G+E E
Sbjct: 90 ------------FDMADYKGAKEAYEKGIEAE 109
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 616 VSSNERFRHFVTSPGMAVVLFCSK--AEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIA 673
V+S F ++ + +V F ++ K++ E+ K + + F+KV+V++ +
Sbjct: 13 VTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVT 72
Query: 674 KSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
+ E ++S+P FK+YKNGS V + G L++ ++ Y++
Sbjct: 73 EKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 112
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 14/110 (12%)
Query: 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLR-GNLLFKASKYKEACY 514
Y G ++ A++ Q A ++DPNN ASA GN +K Y++A
Sbjct: 18 AYYKQGDYQKAIEYYQKALELDPNN-------------ASAWYNLGNAYYKQGDYQKAIE 64
Query: 515 AYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564
Y + LE + N+ R K G Y+KA+ED AL + P+ +KA+
Sbjct: 65 YYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAK 114
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 257 LDP----EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
+DP E K +GN Y + ++ A+ Y +A+ ++ + A+ N A G +A
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
+ ++A+ +DP +A +R Y++ G+ +KA+ Y+K+ L
Sbjct: 63 IEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559
GN +K Y++A Y + LE + N+ N K G Y+KA+E AL + P+
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 560 ------------YSKARLEAAIQDYEMLIREIPGNEEVGRALFEAQ 593
Y + + AI+DY+ + P N + + L A+
Sbjct: 76 NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAK 121
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 433 CLEYYTKLFGLA-GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491
+EYY K L A R Y G ++ A++ Q A ++DPNN + + + AK
Sbjct: 62 AIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAK 121
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDP---EELKFMGNEAYNKARFEDALALYDRAIAIN 289
+GN + G++ + I K LDP E +GN Y + +++A+ Y +A+ ++
Sbjct: 7 LGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSH 349
A N A G EA+ ++A+ +DP A + L Y++ G+ ++A+ +
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125
Query: 350 YKKSSSL 356
Y+K+ L
Sbjct: 126 YQKALEL 132
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515
Y G +++A++ Q A ++DP + E + GN +K Y EA
Sbjct: 10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNL------------GNAYYKQGDYDEAIEY 57
Query: 516 YSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
Y + LE + ++ N K G Y++A+E AL + P
Sbjct: 58 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515
Y G +++A++ Q A ++DP + E + GN +K Y EA
Sbjct: 44 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNL------------GNAYYKQGDYDEAIEY 91
Query: 516 YSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
Y + LE + ++ N K G Y++A+E AL + P
Sbjct: 92 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDP---EELKFMGNEAYNKARFEDALALYDRAIAIN 289
+GN + G++ + I K LDP E +GN Y + +++A+ Y +A+ ++
Sbjct: 41 LGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
A N A G EA+ ++A+ +DP
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
RGN F A + EA Y +E + V N +AC G EK +E T AL + P
Sbjct: 27 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 86
Query: 559 SYSKARLEAAIQDYEMLIREIPGNEEVGR---ALFEAQV 594
+SKA L+R NE +G A+F+ V
Sbjct: 87 DHSKA-----------LLRRASANESLGNFTDAMFDLSV 114
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVE-CKEA 319
+LK GN + F +A+ Y AI ++ ++ + SN SA I G +E ++E +A
Sbjct: 23 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTG-DLEKVIEFTTKA 81
Query: 320 IRIDPCYHRAHHRLA 334
+ I P + +A R A
Sbjct: 82 LEIKPDHSKALLRRA 96
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
RGN F A + EA Y +E + V N +AC G EK +E T AL + P
Sbjct: 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90
Query: 559 SYSKARLEAAIQDYEMLIREIPGNEEVGR---ALFEAQV 594
+SKA L+R NE +G A+F+ V
Sbjct: 91 DHSKA-----------LLRRASANESLGNFTDAMFDLSV 118
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVE-CKEA 319
+LK GN + F +A+ Y AI ++ ++ + SN SA I G +E ++E +A
Sbjct: 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTG-DLEKVIEFTTKA 85
Query: 320 IRIDPCYHRAHHRLA 334
+ I P + +A R A
Sbjct: 86 LEIKPDHSKALLRRA 100
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 257 LDP----EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
+DP E +GN Y + +++A+ Y +A+ ++ + A N A G EA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
+ ++A+ +DP A + L Y++ G+ ++A+ +Y+K+ L
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515
Y G +++A++ Q A ++DPNN E + GN +K Y EA
Sbjct: 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNL------------GNAYYKQGDYDEAIEY 65
Query: 516 YSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564
Y + LE + N+ N K G Y++A+E AL + P+ ++A+
Sbjct: 66 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDP---EELKFMGNEAYNKARFEDALALYDRAIAIN 289
+GN + G++ + I K LDP E +GN Y + +++A+ Y +A+ ++
Sbjct: 15 LGNAYYK-QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334
+ A N A G EA+ ++A+ +DP A L
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 20/110 (18%)
Query: 433 CLEYYTKLFGLA-GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491
+EYY K L A Y G +++A++ Q A ++DPNN E +
Sbjct: 28 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL---- 83
Query: 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLG 541
GN +K Y EA Y + LE L N A + LG
Sbjct: 84 --------GNAYYKQGDYDEAIEYYQKALE-------LDPNNAEAKQNLG 118
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 12/102 (11%)
Query: 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559
GN +K Y EA Y + LE + N+ N K G Y++A+E AL + P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 560 ------------YSKARLEAAIQDYEMLIREIPGNEEVGRAL 589
Y + + AI+ Y+ + P N E + L
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 433 CLEYYTKLFGLA-GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491
+EYY K L A Y G +++A++ Q A ++DPNN E + + AK
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 644 QVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCEL 703
Q+ ++M ++ K P V+F+K+E E P +++ +SS+P F +KN ++ + G
Sbjct: 49 QMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPE 108
Query: 704 LEKSVKLYSS 713
L K V+ ++S
Sbjct: 109 LTKKVQRHAS 118
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 644 QVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCEL 703
Q+ ++M ++ K P V+F+K+E E P +++ +SS+P F +KN ++ + G
Sbjct: 55 QMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPE 114
Query: 704 LEKSVKLYSS 713
L K V+ ++S
Sbjct: 115 LTKKVQRHAS 124
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
EELK N+ + +E+A+ Y +AI +N S A Y N+S A + AL + A
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYK 351
I +D Y + ++R A LG+ A+ Y+
Sbjct: 67 IELDKKYIKGYYRRAASNMALGKFRAALRDYE 98
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556
+ + N FKA Y+ A YS+ +E N++ NR+ + Y A+ D T A+ +
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 557 MPSYSK------------ARLEAAIQDYEMLIREIPGNEE 584
Y K + AA++DYE +++ P +++
Sbjct: 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 109
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
+GN F+ KY +A Y+ LE + + V N +AC +G +K VE T AL + P
Sbjct: 12 KGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70
Query: 559 SYSKARLEAAIQDYEMLIREIPGNEEVGR---ALFEAQV 594
YSK +L+R NE +G+ A+F+ V
Sbjct: 71 DYSK-----------VLLRRASANEGLGKFADAMFDLSV 98
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR 321
LK GN+ + +++DA+ Y+ A+ + Y SN SA + +G + + +A+
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFY-SNLSACYVSVGDLKKVVEMSTKALE 67
Query: 322 IDPCYHRAHHRLA 334
+ P Y + R A
Sbjct: 68 LKPDYSKVLLRRA 80
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 259 PEELKFMGNEAYNKARFEDALALYDRAIAI-NSSKATYRSNKSAALIG----LGRQ---- 309
PE F +K F+ AL YD AI + N Y A L+G L R
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG--IAPLVGKATLLTRNPTVE 429
Query: 310 --IEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357
IEA ++A ++DP +A LA + + + ++A++ +++S+ LA
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
EELK N+ + +E+A+ Y +AI +N S A Y N+S A + AL + A
Sbjct: 22 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRA 81
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHY 350
I +D Y + ++R A LG+ A+ Y
Sbjct: 82 IELDKKYIKGYYRRAASNMALGKFRAALRDY 112
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556
+ + N FKA Y+ A YS+ +E N++ NR+ + Y A+ D T A+ +
Sbjct: 25 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIEL 84
Query: 557 MPSYSK------------ARLEAAIQDYEMLIREIPGNEEV 585
Y K + AA++DYE +++ P +++
Sbjct: 85 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 125
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
EELK N+ + +E+A+ Y +AI +N S A Y N+S A + AL + A
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYK 351
I +D Y + ++R A LG+ A+ Y+
Sbjct: 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYE 105
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556
+ + N FKA Y+ A YS+ +E N++ NR+ + Y A+ D T A+ +
Sbjct: 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 557 MPSYSK------------ARLEAAIQDYEMLIREIPGNEEV 585
Y K + AA++DYE +++ P +++
Sbjct: 77 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 117
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 263 KFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI 322
K +GN+AY K F+ AL YD+A ++ + TY +N++A G + C++AI +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 323 DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH---LTKCNEAR 379
+ ++A Y R+G + YK + N K+ A H+ L KC +A
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYN-----KSLAEHRTPDVLKKCQQAE 122
Query: 380 EL 381
++
Sbjct: 123 KI 124
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512
+A VY G + + + A ++ N+E + + A A AR+ GN FK KYK+A
Sbjct: 44 QAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI----AKAYARI-GNSYFKEEKYKDA 98
Query: 513 CYAYSEGL-EHEAYNSVLLCNRA 534
+ Y++ L EH + + C +A
Sbjct: 99 IHFYNKSLAEHRTPDVLKKCQQA 121
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 263 KFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI 322
K +GN+AY K F+ AL YD+A ++ + TY +N++A G + C++AI +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 323 DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH---LTKCNEAR 379
+ ++A Y R+G + YK + N K+ A H+ L KC +A
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYN-----KSLAEHRTPDVLKKCQQAE 122
Query: 380 EL 381
++
Sbjct: 123 KI 124
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512
+A VY G + + + A ++ N+E + + A A AR+ GN FK KYK+A
Sbjct: 44 QAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI----AKAYARI-GNSYFKEEKYKDA 98
Query: 513 CYAYSEGL-EHEAYNSVLLCNRA 534
+ Y++ L EH + + C +A
Sbjct: 99 IHFYNKSLAEHRTPDVLKKCQQA 121
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 266 GNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC 325
GNE + K + A+ Y AI N A SN++A L AL +C+E I+++P
Sbjct: 23 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82
Query: 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
+ + + R A + + KA+ Y+K+ L
Sbjct: 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
+GN F+ Y +A Y+E ++ ++ L NRAAC +KL +++ A++DC + + P
Sbjct: 22 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81
Query: 559 SYSK------ARLEAAIQDY 572
++ K A LE A++DY
Sbjct: 82 TFIKGYTRKAAALE-AMKDY 100
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 649 MEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSV 708
+ ++ + +P V F+K +V++ P IAK V+++P F + K+G + +I G LEK +
Sbjct: 52 LTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 111
Query: 709 K 709
K
Sbjct: 112 K 112
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 619 NERFRHFVTSPGMAVVLFCSK--AEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE 676
++ F F+ S +AVV F ++ A + ++E++ + +P V F K+ +++P IA
Sbjct: 6 SKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARY 65
Query: 677 GVSSIPAFKIYKNGSRVKEIPG 698
GV S+P +K+G V EI G
Sbjct: 66 GVMSLPTVIFFKDGEPVDEIIG 87
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V+D +A V S+P F+ +K G +V E G E
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVDDSQDVASESEVKSMPTFQFFKKGQKVGEFSGANKE 95
Query: 703 LLEKSV 708
LE ++
Sbjct: 96 KLEATI 101
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
+GN +A YSE ++ + +N VL NR+A +K G Y+KA ED + + P
Sbjct: 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 69
Query: 559 SYSKA------------RLEAAIQDYEMLIREIPGNEEVGRAL 589
+ K R E A + YE ++ N ++ L
Sbjct: 70 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%)
Query: 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAI 320
ELK GN+A + +DAL Y AI ++ SN+SAA G +A + + +
Sbjct: 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65
Query: 321 RIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353
+ P + + + R A L E+A Y++
Sbjct: 66 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V+D +A V S+P F+ +K G +V E G E
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFKKGQKVGEFSGANKE 95
Query: 703 LLEKSV 708
LE ++
Sbjct: 96 KLEATI 101
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 263 KFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI 322
K +GN+AY K F+ AL YD+A ++ + TY N++A G + C++AI +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 323 DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH---KHLTKCNEAR 379
+ +A Y R+G + YK + N K+ A H K L KC +A
Sbjct: 68 GRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYN-----KSLAEHRTPKVLKKCQQAE 122
Query: 380 EL 381
++
Sbjct: 123 KI 124
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKY 509
++ +A VY G + + + A ++ N+E + + A A AR+ GN FK KY
Sbjct: 41 IVNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRMI----AYAYARI-GNSYFKEEKY 95
Query: 510 KEACYAYSEGL-EHEAYNSVLLCNRA 534
K+A + Y++ L EH + C +A
Sbjct: 96 KDAIHFYNKSLAEHRTPKVLKKCQQA 121
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 257 LDP----EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
+DP E +GN Y + +++A+ Y +A+ + + A N A G EA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
+ ++A+ + P A + L Y++ G+ ++A+ +Y+K+ L
Sbjct: 63 IEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515
Y G +++A++ Q A ++ PNN E + GN +K Y EA
Sbjct: 18 AYYKQGDYDEAIEYYQKALELYPNNAEAWYNL------------GNAYYKQGDYDEAIEY 65
Query: 516 YSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564
Y + LE N+ N K G Y++A+E AL + P+ ++A+
Sbjct: 66 YQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAK 114
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559
GN +K Y EA Y + LE N+ N K G Y++A+E AL + P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 560 ------------YSKARLEAAIQDYEMLIREIPGNEEVGRAL 589
Y + + AI+ Y+ + P N E + L
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNL 117
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 20/110 (18%)
Query: 433 CLEYYTKLFGLA-GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491
+EYY K L A Y G +++A++ Q A ++ PNN E +
Sbjct: 28 AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNL---- 83
Query: 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLG 541
GN +K Y EA Y + LE L N A + LG
Sbjct: 84 --------GNAYYKQGDYDEAIEYYQKALE-------LYPNNAEAKQNLG 118
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDC-------- 550
+GN LFK Y+EA + Y + + + N V N+A KLG+Y +A++ C
Sbjct: 10 QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69
Query: 551 TAALIVMPSYSKARLEAA 568
TA + + S + RLE A
Sbjct: 70 TAEHVAIRSKLQYRLELA 87
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
E+ K GN + + + +A+ YD+ I SNK+ ALI LG +A+ C++
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAV 347
+R R + L +RL A+ AV
Sbjct: 65 LRYTSTAEHVAIR-SKLQYRLELAQGAV 91
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
K + + ++ K+FP+V FLKV+V++ +A+ V ++P F K+G V + G
Sbjct: 42 KMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVG 97
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVEC 316
+ EE + G E + K+ + +A+ Y I A SN++AAL L EA+ +C
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 317 KEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHY 350
+AI DP + RA Y R A+ AV Y
Sbjct: 62 NKAIEKDPNFVRA-------YIRKATAQIAVKEY 88
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 496 ARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555
ARL G F S + A AY+E ++ ++ NRAA +KL + +A+ DC A+
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 556 VMPSYSKARLEAA 568
P++ +A + A
Sbjct: 67 KDPNFVRAYIRKA 79
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V+D +A V S+P F+ +K G +V E G E
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKE 95
Query: 703 LLEKSV 708
LE ++
Sbjct: 96 KLEATI 101
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V+D +A V S+P F+ +K G +V E G E
Sbjct: 47 KMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKE 106
Query: 703 LLEKSV 708
LE ++
Sbjct: 107 KLEATI 112
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 245 GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALI 304
G P SLN L N + E+A+ LY +A+ + A SN ++ L
Sbjct: 3 GSCPTHADSLNNL--------ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 54
Query: 305 GLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353
G+ EAL+ KEAIRI P + A+ + + + + A+ Y ++
Sbjct: 55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRA 103
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 15/133 (11%)
Query: 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVEC-KEAIRIDPCYHRAH 330
+ + ++AL Y AI I+ + A SN L + + ++ ++C AI+I+P + AH
Sbjct: 56 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM-QDVQGALQCYTRAIQINPAFADAH 114
Query: 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELK---RWNDL 387
LA ++ G +A++ Y+ ++L + D A CN A L+ W D
Sbjct: 115 SNLASIHKDSGNIPEAIASYR--TALKLKPDFPDA--------YCNLAHCLQIVCDWTDY 164
Query: 388 LKETQNVISFGAD 400
+ + ++S AD
Sbjct: 165 DERMKKLVSIVAD 177
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
MGN + AL Y RAI IN + A SN ++ G EA+ + A+++ P
Sbjct: 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL-ANQKDIAKAEALHKH 371
+ A+ LA + + KK S+ A+Q + + ++H H
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPH 190
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 612 NLVFVSSNERFRHFVTSPGMAVVLFCSK--AEHKQVLQLMEQVCKRFPSVNFLKVEVEDH 669
++V V S E+FR+ ++ + V F + K + + ME++ FP+V F KV+ +++
Sbjct: 20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNN 79
Query: 670 PYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVK 709
I V +P F I ++G + + G +L + ++
Sbjct: 80 SEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLR 119
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V+D +A V + P F+ +K G +V E G E
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKKGQKVGEFSGANKE 95
Query: 703 LLEKSV 708
LE ++
Sbjct: 96 KLEATI 101
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V+D +A V + P F+ +K G +V E G E
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKKGQKVGEFSGANKE 95
Query: 703 LLEKSV 708
LE ++
Sbjct: 96 KLEATI 101
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V+D +A V +P F+ +K G +V E G E
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKE 95
Query: 703 LLEKSV 708
LE ++
Sbjct: 96 KLEATI 101
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY---NSVLLCNRA 534
P E A ++ R GN LFK Y A AY++ L +A +VL NRA
Sbjct: 13 PGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRA 72
Query: 535 ACRSKLGQYEKAVEDCTAAL 554
AC KL Y+KA + + A+
Sbjct: 73 ACHLKLEDYDKAETEASKAI 92
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 231 GRNGVMGNIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINS 290
G +G G V P P+ ++ E+L+ GNE + + ALA Y +A+ +++
Sbjct: 1 GSSGSSGMTVSGPGTPEPR-PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA 59
Query: 291 S---KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAV 347
+ +A N++A + L +A E +AI D +A +R + +LG ++AV
Sbjct: 60 TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV 119
Query: 348 SHYKKSSSL 356
++ SL
Sbjct: 120 LDLQRCVSL 128
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEAL 313
+N EE + G E + K+ + +A+ Y I A SN++AAL L EA+
Sbjct: 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 193
Query: 314 VECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHY 350
+C +AI DP + RA Y R A+ AV Y
Sbjct: 194 ADCNKAIEKDPNFVRA-------YIRKATAQIAVKEY 223
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 496 ARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555
ARL G F S + A AY+E ++ ++ NRAA +KL + +A+ DC A+
Sbjct: 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201
Query: 556 VMPSYSKARLEAA 568
P++ +A + A
Sbjct: 202 KDPNFVRAYIRKA 214
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 18/129 (13%)
Query: 263 KFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEAL------VEC 316
K GN+ Y +F++A+ Y++A ++ TY +N++AA G A+ VE
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67
Query: 317 KEAIRID-PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKC 375
+R D ++ R+ Y +LG+ +K + +Y+KS + DI LTK
Sbjct: 68 GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADI---------LTKL 118
Query: 376 -NEARELKR 383
N +ELK+
Sbjct: 119 RNAEKELKK 127
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 497 RLRGNLLFKASKYKEACYAYSEGLE-HEAYNSVLLCNRAACRSKLGQYEKAV 547
+ GN +KA ++ EA Y++ E H+ + L NRAA + G+YE A+
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELHK--DITYLNNRAAAEYEKGEYETAI 58
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 618 SNERFRHFVTSPGMAVVLFCSK--AEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKS 675
+++ F F+T + VV F ++ A + ++E++ +P V F K+ E+ IA
Sbjct: 12 NSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMR 71
Query: 676 EGVSSIPAFKIYKNGSRVKEIPG 698
G+ S+P +KNG V +I G
Sbjct: 72 YGIMSLPTIMFFKNGELVDQILG 94
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 659 VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
V F KV+V++ IA+ G+ ++P F +KNG ++ + G L+ ++ +S+
Sbjct: 67 VGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHSA 121
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 40/66 (60%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + ++E+ +++P +F K++V++ +A+ VS++P ++KNG V ++ G
Sbjct: 34 KMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPA 93
Query: 703 LLEKSV 708
+++++
Sbjct: 94 AIKQAI 99
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 40/66 (60%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + ++E+ +++P +F K++V++ +A+ VS++P ++KNG V ++ G
Sbjct: 40 KMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPA 99
Query: 703 LLEKSV 708
+++++
Sbjct: 100 AIKQAI 105
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 40/66 (60%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + ++E+ +++P +F K++V++ +A+ VS++P ++KNG V ++ G
Sbjct: 40 KMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPA 99
Query: 703 LLEKSV 708
+++++
Sbjct: 100 AIKQAI 105
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V+D +A V +P F+ +K G +V E G E
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKE 95
Query: 703 LLEKSV 708
LE ++
Sbjct: 96 KLEATI 101
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V+D +A V +P F+ +K G +V E G E
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKRMPTFQFFKKGQKVGEFSGANKE 95
Query: 703 LLEKSV 708
LE ++
Sbjct: 96 KLEATI 101
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V+D +A V +P F+ +K G +V E G E
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKE 95
Query: 703 LLEKSV 708
LE ++
Sbjct: 96 KLEATI 101
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI 322
+GN AY + FE A YD+AI ++ S T+ +NK+A + E + C++A+ +
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 647 QLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706
+L+E + +V LKV+V++ IA +SS+P F KNG +V+E G + LE
Sbjct: 41 KLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLED 100
Query: 707 SVK 709
+K
Sbjct: 101 VIK 103
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333
+++ A+ L + N R AL LGR EA+ K A+ + P + H +
Sbjct: 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
Query: 334 AMLYFRLGEAEKAVSHYKKSSSL 356
A Y ++G E+A+ H+KK++ L
Sbjct: 151 AFSYEQMGRHEEALPHFKKANEL 173
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V+D +A V P F+ +K G +V E G E
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCTPTFQFFKKGQKVGEFSGANKE 95
Query: 703 LLEKSV 708
LE ++
Sbjct: 96 KLEATI 101
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333
+++ A+ L + N R AL LGR EA+ K A+ + P + H +
Sbjct: 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
Query: 334 AMLYFRLGEAEKAVSHYKKSSSL 356
A Y ++G E+A+ H+KK++ L
Sbjct: 151 AFSYEQMGRHEEALPHFKKANEL 173
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V D +A V +P F+ +K G +V E G E
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVNDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKE 95
Query: 703 LLEKSV 708
LE ++
Sbjct: 96 KLEATI 101
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333
+++ A+ L + N R AL LGR EA+ K A+ + P + H +
Sbjct: 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
Query: 334 AMLYFRLGEAEKAVSHYKKSSSL 356
A Y ++G E+A+ H+KK++ L
Sbjct: 151 AFSYEQMGRHEEALPHFKKANEL 173
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 647 QLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706
+L+E + +V LKV+V++ IA +SS+P F KNG +V+E G + LE
Sbjct: 46 KLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLED 105
Query: 707 SVK 709
+K
Sbjct: 106 VIK 108
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 651 QVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+ K+FP FLKV+V++ +A++ V ++P F K+G +V + G
Sbjct: 52 EYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVG 99
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 44/92 (47%)
Query: 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333
+++ A+ L + N R AL LGR EA+ K A+ + P + H +
Sbjct: 91 KYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
Query: 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365
A Y ++G E+A+ H+KK++ L + + A
Sbjct: 151 AYSYEQMGSHEEALPHFKKANELDERSAVELA 182
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 241 KQPSGEFPQCISSLNKLDP---EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRS 297
K E C ++ +L P + L + N + E+A+ LY +A+ + A S
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343
Query: 298 NKSAALIGLGRQIEALVECKEAIRIDPCYHRAH 330
N ++ L G+ EAL+ KEAIRI P + A+
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 18/214 (8%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
+GN R E+A A Y +AI + A SN G A+ ++A+ +DP
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384
+ A+ L + ++AV+ Y ++ SL+ + +H +L + L
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV-----VHGNLACVYYEQGLI-- 253
Query: 385 NDLLKETQNVISFGADSAPQVYXXXXXXXXXXXXHQEAHDSYNKSPKFCLEYYTKLFGLA 444
DL +T P Y EA D YN + + C + L LA
Sbjct: 254 -DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312
Query: 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478
I R Q G E+AV+ + A ++ P
Sbjct: 313 N-----IKREQ-----GNIEEAVRLYRKALEVFP 336
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 34/58 (58%)
Query: 651 QVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSV 708
+ K+FP FLKV+V++ +A+ V ++P F K+G+ ++ G + + L+ ++
Sbjct: 60 EYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 117
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 241 KQPSGEFPQCISSLNKL---DP---EELKFMGNEAYNKARFEDALALYDRAIAINSSKAT 294
K+ G+F I + K+ DP E L +G + DA+ + + ++++ A
Sbjct: 15 KRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE 74
Query: 295 YRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSS 354
+A + + A+ + AI ++ Y A+++L ++Y +GE +KA+ Y+K+
Sbjct: 75 AYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134
Query: 355 SL 356
S+
Sbjct: 135 SI 136
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 42/97 (43%)
Query: 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEAL 313
L+ E +G+ + + A+ RAIA+N+ A +G +A+
Sbjct: 68 LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAI 127
Query: 314 VECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHY 350
++ I I P + RA+ + + Y G ++AV ++
Sbjct: 128 EAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIA-INSSKATYRSNKSAAL----------IG--- 305
E+LK +GN + +E A+ Y + + + S+A A L IG
Sbjct: 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 283
Query: 306 --LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363
+ A+ C EA+ IDP +A +R A + L E ++A++ KK+ +A +
Sbjct: 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343
Query: 364 KAEAL 368
+AE L
Sbjct: 344 QAELL 348
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 21/107 (19%)
Query: 500 GNLLFKASKYKEACYAYS------EGLEHEAYNS--------VLLC--NRAACRSKLGQY 543
GN FK+ ++ A Y+ EG A ++ L C N AC+ K+ +
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289
Query: 544 EKAVEDCTAALIVMPS-----YSKARLEAAIQDYEMLIREIPGNEEV 585
+ AV+ C AL + PS Y +A+ +++Y+ + ++ +E+
Sbjct: 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVS 348
NS++A Y N A G EA+ ++A+ +DP A + L Y++ G+ ++A+
Sbjct: 7 NSAEAWY--NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 349 HYKKSSSL 356
+Y+K+ L
Sbjct: 65 YYQKALEL 72
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515
Y G +++A++ Q A ++DPNN E + GN +K Y EA
Sbjct: 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNL------------GNAYYKQGDYDEAIEY 65
Query: 516 YSEGLEHEAYNSVLLCNRAACRSKLG 541
Y + LE + N+ N + K G
Sbjct: 66 YQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559
GN +K Y EA Y + LE + N+ N K G Y++A+E AL + P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 560 YSKAR 564
++A+
Sbjct: 76 NAEAK 80
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 257 LDP----EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
+DP E +GN Y + +++A+ Y +A+ ++ + A N A G EA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 313 LVECKEAIRIDPCYHRAHHRLA 334
+ ++A+ +DP A L
Sbjct: 63 IEYYQKALELDPNNAEAKQNLG 84
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 433 CLEYYTKLFGLA-GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491
+EYY K L A Y G +++A++ Q A ++DPNN E + + AK
Sbjct: 28 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ-- 700
K + +E++ + V FLKV+V++ IA+ ++ +P F KNG ++ + G
Sbjct: 36 KMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMKNGQKLDSLSGANYD 95
Query: 701 --CELLEKS 707
EL+EK+
Sbjct: 96 KLLELVEKN 104
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 628 SPGMAVVLFCSK--AEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPA-F 684
+PG+ +V F + +++ Q++ + + V F+KV+V+ + A + GVSSIPA F
Sbjct: 22 APGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALF 81
Query: 685 KIYKNGSRVKEI 696
+ K G+ +K +
Sbjct: 82 FVKKEGNEIKTL 93
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 35.8 bits (81), Expect = 0.081, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 652 VCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLY 711
+ K+FP+ FLKV+V++ IA+ V ++P F K G + G E L V L+
Sbjct: 59 LAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLH 118
Query: 712 SS 713
++
Sbjct: 119 AA 120
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 35.8 bits (81), Expect = 0.088, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 652 VCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLY 711
+ K+FP+ FLKV+V++ IA+ V ++P F K G + G E L V L+
Sbjct: 62 LAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLH 121
Query: 712 SS 713
++
Sbjct: 122 AA 123
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 494 ASARLRGNLLFKASKYKEACYAYSE---------GL---EHEAYNSVLLC---NRAACRS 538
A + +G + FK KY +A Y + GL E +A S LL N A C
Sbjct: 269 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328
Query: 539 KLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEVG 586
KL +Y KAVE C AL + + K E+A D+E ++ P N+
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388
Query: 587 RALFEAQVQLKKQRGED 603
+F Q + K+ D
Sbjct: 389 LQIFMCQKKAKEHNERD 405
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + L +++ +++ ++ F+KV+V+ A+ +S++P F KNG +V ++ G
Sbjct: 49 KTIAPLFKELSEKYDAI-FVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIA 107
Query: 703 LLEKSVKLY 711
+E +K +
Sbjct: 108 KVEDMIKKF 116
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + L +++ +++ ++ F+KV+V+ A+ +S++P F KNG +V ++ G
Sbjct: 40 KTIAPLFKELSEKYDAI-FVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIA 98
Query: 703 LLEKSVKLY 711
+E +K +
Sbjct: 99 KVEDMIKKF 107
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 305 GLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364
G G +AL K+A R++P Y H + ++Y LGE +KA + K++ +L + +I
Sbjct: 96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRS 155
Query: 365 AEA-LHKHLTKCNEA 378
A A L+ + + +EA
Sbjct: 156 ALAELYLSMGRLDEA 170
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 650 EQVCKRFPSVNFLKVEV-EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSV 708
E++ + + V FLK++ +++ +AK G+ +P FKI K S V E+ G + + L +++
Sbjct: 60 EKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 119
Query: 709 K 709
+
Sbjct: 120 Q 120
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 650 EQVCKRFPSVNFLKVEV-EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSV 708
E++ + + V FLK++ +++ +AK G+ +P FKI K S V E+ G + + L +++
Sbjct: 48 EKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 107
Query: 709 K 709
+
Sbjct: 108 Q 108
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + ++E+ +++ F K++V++ +A+ VSS+P YK G V + G
Sbjct: 43 KMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPA 102
Query: 703 LLEKSV 708
+++++
Sbjct: 103 AIKQAI 108
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + ++E+ +++ F K++V++ +A+ VSS+P YK G V + G
Sbjct: 42 KMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPA 101
Query: 703 LLEKSV 708
+++++
Sbjct: 102 AIKQAI 107
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + ++E+ +++ F K++V++ +A+ VSS+P YK G V + G
Sbjct: 35 KMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPA 94
Query: 703 LLEKSV 708
+++++
Sbjct: 95 AIKQAI 100
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 619 NERFRHFVTSPGMAVVLFCSK--AEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE 676
NE+ + S + VV F + + + + K+ P+V FLKV+ ++ +A
Sbjct: 28 NEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDW 87
Query: 677 GVSSIPAFKIYKNGSRVKEIPGHQCELLEKSV 708
+ ++P F K G + ++ G + + L+ ++
Sbjct: 88 AIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 119
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + ++E+ +++ F K++V++ +A+ VSS+P YK G V + G
Sbjct: 35 KMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPA 94
Query: 703 LLEKSV 708
+++++
Sbjct: 95 AIKQAI 100
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 650 EQVCKRFPSVNFLKVEV-EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSV 708
E++ + + V FLK++ +++ +AK G+ +P FKI K S V E+ G + + L +++
Sbjct: 47 EKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 106
Query: 709 K 709
+
Sbjct: 107 Q 107
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 27/116 (23%)
Query: 494 ASARLRGNLLFKASKYKEACYAYSE---------GL---EHEAYNSVLLC---NRAACRS 538
A + +G + FK KY +A Y + GL E +A S LL N A C
Sbjct: 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328
Query: 539 KLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGN 582
KL +Y KAVE C AL + + K E+A D+E ++ P N
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 655 RFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVK 709
++P FL+V+V A + +S+ P F+ ++N R+ + G LE+ +K
Sbjct: 49 KYPQAVFLEVDVHQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIK 103
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690
K + + +++ +V FL+V+V+D +A G+ IP ++KNG
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLLLFKNG 83
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 650 EQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
E +R V F+KV E P ++ + SIP +Y+NG + + G
Sbjct: 79 ETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYRNGKXIDXLNG 127
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 643 KQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ- 700
K + ++E++ + + LK++V+++P A V SIP ++K+G V ++ G Q
Sbjct: 36 KMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQP 95
Query: 701 ----CELLEK 706
E+L+K
Sbjct: 96 KENLAEVLDK 105
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 643 KQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ- 700
K + ++E++ + + LK++V+++P A V SIP ++K+G V ++ G Q
Sbjct: 35 KMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQP 94
Query: 701 ----CELLEK 706
E+L+K
Sbjct: 95 KENLAEVLDK 104
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 643 KQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ- 700
K + ++E++ + + LK++V+++P A V SIP ++K+G V ++ G Q
Sbjct: 36 KMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQP 95
Query: 701 ----CELLEK 706
E+L+K
Sbjct: 96 KENLAEVLDK 105
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 643 KQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ- 700
K + ++E++ + + LK++V+++P A V SIP ++K+G V ++ G Q
Sbjct: 36 KMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQP 95
Query: 701 ----CELLEK 706
E+L+K
Sbjct: 96 KENLAEVLDK 105
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 649 MEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+E + K P V F KV+V+ + A V+++P F K+G V G
Sbjct: 41 VEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSG 90
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 643 KQVLQLMEQVC-KRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
K V ++E++ +R + K++V+ +P A++ V SIP ++K+G VK I G
Sbjct: 46 KMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVG 102
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 643 KQVLQLMEQVC-KRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
K V ++E++ +R + K++V+ +P A++ V SIP ++K+G VK I G
Sbjct: 41 KMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVG 97
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 643 KQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ- 700
K + ++E++ + + LK++V+++P A V SIP ++K+G V ++ G Q
Sbjct: 35 KMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQP 94
Query: 701 ----CELLEK 706
E+L+K
Sbjct: 95 KENLAEVLDK 104
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 643 KQVLQLMEQVC-KRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
K V ++E++ +R + K++V+ +P A++ V SIP ++K+G VK I G
Sbjct: 43 KMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVG 99
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 659 VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ 700
V K+ V+++P G+ SIP ++K G VK++ G+Q
Sbjct: 50 VTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQ 91
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 643 KQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+Q+ +E + + + +K+ ++++P A GV SIP +Y+ G K I G
Sbjct: 39 RQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVG 95
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 659 VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ 700
V K+ V+++P G+ SIP ++K G VK++ G+Q
Sbjct: 50 VTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQ 91
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 659 VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ 700
V K+ V+++P G+ SIP ++K G VK++ G+Q
Sbjct: 50 VTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQ 91
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 659 VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ 700
V K+ V+++P G+ SIP ++K G VK++ G+Q
Sbjct: 50 VTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQ 91
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 252 SSLNKLDPEE-LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQI 310
S L K D + L+ +A++ A + A+ D+ + + A R ++ I G
Sbjct: 112 SQLVKADEXQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171
Query: 311 EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHK 370
+A+ + K A ++ A ++++ LY++LG+ E ++S ++ L +D + A +K
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYK 229
Query: 371 HLTKCN 376
+ K N
Sbjct: 230 QVKKLN 235
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%)
Query: 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALV 314
+ +DP+ +G + F A+ ++ A+ + + + A L R EA+
Sbjct: 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268
Query: 315 ECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
A+ I P + R+ + L + LG +AVS++ + SL
Sbjct: 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 610 GSNLVFVSSNERFRHFVT--SPGMAVVL------FCSKAEHKQVLQLMEQVCKRFPSVNF 661
G N+ +++ ER+ ++ S +VL +C KQ+ ++ + +PS+ F
Sbjct: 23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPC--KQIAPYYIELSENYPSLMF 80
Query: 662 LKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
L ++V++ + S + + P F ++G +V ++ G
Sbjct: 81 LVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVG 117
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 610 GSNLVFVSSNERFRHFVT--SPGMAVVL------FCSKAEHKQVLQLMEQVCKRFPSVNF 661
G N+ +++ ER+ ++ S +VL +C + +Q+ ++ + +PS+ F
Sbjct: 23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPS--RQIAPYYIELSENYPSLMF 80
Query: 662 LKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSV 708
L ++V++ + S + + P F ++G +V ++ G L K +
Sbjct: 81 LVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSH 349
S++A Y N A G EA+ ++A+ +DP A + L Y++ G+ ++A+ +
Sbjct: 2 SAEAWY--NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 59
Query: 350 YKKSSSL 356
Y+K+ L
Sbjct: 60 YQKALEL 66
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
+GN Y + +++A+ Y +A+ ++ A N A G EA+ ++A+ +DP
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 269 AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR 328
A+ + A+A D+ + + A R ++ I G +A+ + K A ++
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCN 376
A ++++ LY++LG+ E ++S ++ L +D + A +K + K N
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN 258
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 662 LKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693
+KV V++HP +A GV S+P +++ G+ V
Sbjct: 86 VKVNVDEHPGLAARYGVRSVPTLVLFRRGAPV 117
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 269 AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR 328
A+ + A+A D+ + + A R ++ I G +A+ + K A ++
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCN 376
A ++++ LY++LG+ E ++S ++ L +D + A +K + K N
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN 258
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
K + + +++ +V FL+V+V+D +A V +P F+ +K G +V E G E
Sbjct: 36 KMIKPFFHSLSEKYSNVIFLEVDVDDXQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKE 95
Query: 703 LLEKSV 708
LE ++
Sbjct: 96 KLEATI 101
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 613 LVFVSSNERFRHFVTSPG--MAVVLF--CSKAEHKQVLQLMEQVCKRFPS---VNFLKVE 665
++ ++ E+F + T+ +VL+ S AE + L+ + + PS V+FL ++
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSID 61
Query: 666 VEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+++ I++ +S++P F I G+ +KE+ G
Sbjct: 62 ADENSEISELFEISAVPYFIIIHKGTILKELSG 94
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 20/96 (20%)
Query: 499 RGNLLFKASKYKEACYAYSE---GLEHE------------AYNSVLLCNRAACRSKLGQY 543
RG + FK KYK+A Y + LE+E A N A C KL +
Sbjct: 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212
Query: 544 EKAVEDCTAALIVMPSYSKA---RLEA--AIQDYEM 574
A+E C AL + + K R EA A+ D+E+
Sbjct: 213 SAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFEL 248
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 20/96 (20%)
Query: 499 RGNLLFKASKYKEACYAYSE---GLEHE------------AYNSVLLCNRAACRSKLGQY 543
RG + FK KYK+A Y + LE+E A N A C KL +
Sbjct: 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212
Query: 544 EKAVEDCTAALIVMPSYSKA---RLEA--AIQDYEM 574
A+E C AL + + K R EA A+ D+E+
Sbjct: 213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 282 YDRAIAINSSKATYRSN------KSAALIGLGRQIE-ALVECKEAIRIDPCYHRAHHRLA 334
YD+A+ ++ + R N K A + G Q E A+ + A+ + P Y R+ + L
Sbjct: 184 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 243
Query: 335 MLYFRLGEAEKAVSHYKKSSSL 356
+ LG +AV H+ ++ ++
Sbjct: 244 ISCINLGAHREAVEHFLEALNM 265
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 647 QLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+L + V K+ V KV+++DH +A VS++P KNG V + G
Sbjct: 52 RLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVG 103
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 282 YDRAIAINSSKATYRSN------KSAALIGLGRQIE-ALVECKEAIRIDPCYHRAHHRLA 334
YD+A+ ++ + R N K A + G Q E A+ + A+ + P Y R+ + L
Sbjct: 193 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 252
Query: 335 MLYFRLGEAEKAVSHY 350
+ LG +AV H+
Sbjct: 253 ISCINLGAHREAVEHF 268
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 282 YDRAIAINSSKATYRSN------KSAALIGLGRQIE-ALVECKEAIRIDPCYHRAHHRLA 334
YD+A+ ++ + R N K A + G Q E A+ + A+ + P Y R+ + L
Sbjct: 193 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 252
Query: 335 MLYFRLGEAEKAVSHYKKS 353
+ LG +AV H+ ++
Sbjct: 253 ISCINLGAHREAVEHFLEA 271
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCN-RAACRSKLGQYEKAVEDC 550
+ LFK + Y EA +++ LE + YNS + N RA C +L +Y+ A +D
Sbjct: 10 ADFLFKNNNYAEAIEVFNK-LEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 282 YDRAIAINSSKATYRSN------KSAALIGLGRQIE-ALVECKEAIRIDPCYHRAHHRLA 334
YD+A+ ++ + R N K A + G Q E A+ + A+ + P Y R+ + L
Sbjct: 170 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 229
Query: 335 MLYFRLGEAEKAVSHYKKS 353
+ LG +AV H+ ++
Sbjct: 230 ISCINLGAHREAVEHFLEA 248
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 282 YDRAIAINSSKATYRSN------KSAALIGLGRQIE-ALVECKEAIRIDPCYHRAHHRLA 334
YD+A+ ++ + R N K A + G Q E A+ + A+ + P Y R+ + L
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292
Query: 335 MLYFRLGEAEKAVSHY 350
+ LG +AV H+
Sbjct: 293 ISCINLGAHREAVEHF 308
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 662 LKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+K+ ++ P +A G+ SIP ++K G + + I G
Sbjct: 55 VKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIG 91
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 643 KQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
K + +++++ K + + K+ ++ P IA + SIP +KNG R + I G
Sbjct: 33 KLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIG 89
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 643 KQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
K + +++++ K + + K+ ++ P IA + SIP +KNG R + I G
Sbjct: 34 KLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIG 90
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 276 EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
E +A R IA S + + K AA +G+G L++C E ++ P
Sbjct: 177 EKGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGKMIP 225
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 643 KQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
K + +++++ K + + K+ ++ P IA + SIP +KNG R + I G
Sbjct: 34 KLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIG 90
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 30/121 (24%)
Query: 491 KAMASARLRGNLLFKASKYKEACYAYSEGL------------------EHEAYNSVLLCN 532
K++ + R +GN LF YKEA AY + L E + N L N
Sbjct: 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68
Query: 533 RAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIP 580
+ C +G +A E + L + KA +L+ A +D ++L+R P
Sbjct: 69 MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128
Query: 581 G 581
Sbjct: 129 A 129
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 643 KQVLQLMEQVCKRFPSVNFL-KVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ 700
+ + ++E++ K + + K++V+++P A V SIP ++K+G V+ + G Q
Sbjct: 35 RXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFKDGQPVEVLVGAQ 93
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 643 KQVLQLMEQVCKRFPSVNFL-KVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ 700
+ + ++E++ K + + K++V+++P A V SIP ++K+G V+ + G Q
Sbjct: 34 RXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFKDGQPVEVLVGAQ 92
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 239 IVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAI---N 289
+++ +G + + I K LDPEE K+ G YN R+E+A+ Y+ I +
Sbjct: 14 VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73
Query: 290 SSKATYRSNKSAALIGLGRQIEA 312
+K + + A G+++EA
Sbjct: 74 YNKDVWAAKADALRYIEGKEVEA 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,798,560
Number of Sequences: 62578
Number of extensions: 704502
Number of successful extensions: 2055
Number of sequences better than 100.0: 136
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1772
Number of HSP's gapped (non-prelim): 256
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)