Query 005125
Match_columns 713
No_of_seqs 1185 out of 5140
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 18:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.5E-43 3.2E-48 354.1 23.8 360 206-601 132-508 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 3.6E-39 7.8E-44 322.8 24.9 351 207-593 99-466 (966)
3 KOG1129 TPR repeat-containing 100.0 1.3E-33 2.8E-38 262.9 13.6 390 56-539 77-475 (478)
4 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-29 2.7E-34 283.9 40.6 200 370-592 333-551 (615)
5 TIGR00990 3a0801s09 mitochondr 100.0 4.6E-29 9.9E-34 279.3 39.1 341 207-578 144-597 (615)
6 PRK15174 Vi polysaccharide exp 100.0 1.1E-28 2.4E-33 275.0 41.2 341 208-584 60-409 (656)
7 KOG1126 DNA-binding cell divis 100.0 4.7E-30 1E-34 262.5 25.3 273 260-562 354-626 (638)
8 PRK15174 Vi polysaccharide exp 100.0 1.9E-28 4.1E-33 273.1 39.6 310 245-584 59-387 (656)
9 KOG0624 dsRNA-activated protei 100.0 5.3E-28 1.2E-32 227.0 30.9 339 254-604 33-396 (504)
10 PRK11447 cellulose synthase su 100.0 4.3E-27 9.4E-32 280.2 41.9 301 207-526 129-528 (1157)
11 PRK11447 cellulose synthase su 100.0 4.8E-27 1E-31 279.8 42.2 326 235-584 274-706 (1157)
12 TIGR02917 PEP_TPR_lipo putativ 100.0 8.1E-27 1.7E-31 276.7 42.1 360 206-591 481-879 (899)
13 KOG0547 Translocase of outer m 100.0 4.2E-27 9.1E-32 231.1 30.4 317 259-598 115-552 (606)
14 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-26 5.1E-31 272.7 42.8 348 206-590 447-811 (899)
15 PRK10049 pgaA outer membrane p 100.0 2.1E-25 4.5E-30 254.2 40.2 369 207-588 32-466 (765)
16 KOG0548 Molecular co-chaperone 99.9 1.2E-24 2.7E-29 217.6 34.2 329 261-596 4-473 (539)
17 PRK10049 pgaA outer membrane p 99.9 4.4E-23 9.6E-28 235.1 40.7 332 245-599 32-443 (765)
18 KOG0547 Translocase of outer m 99.9 1.3E-23 2.8E-28 206.7 30.5 230 327-586 326-574 (606)
19 PRK11788 tetratricopeptide rep 99.9 4.2E-23 9.2E-28 219.7 37.2 275 260-564 36-319 (389)
20 KOG1126 DNA-binding cell divis 99.9 4.8E-24 1E-28 218.6 26.6 296 261-586 319-628 (638)
21 PRK09782 bacteriophage N4 rece 99.9 9.4E-23 2E-27 232.0 38.2 277 278-589 460-750 (987)
22 KOG2002 TPR-containing nuclear 99.9 3.3E-22 7.1E-27 212.4 36.0 372 207-600 147-581 (1018)
23 KOG0550 Molecular chaperone (D 99.9 1.2E-23 2.6E-28 203.1 20.5 316 259-611 49-383 (486)
24 PRK09782 bacteriophage N4 rece 99.9 2.2E-22 4.9E-27 229.0 34.2 274 254-561 470-745 (987)
25 PRK11788 tetratricopeptide rep 99.9 3.8E-22 8.3E-27 212.3 34.0 295 236-555 41-346 (389)
26 KOG2002 TPR-containing nuclear 99.9 2.9E-22 6.3E-27 212.8 31.5 368 206-593 215-656 (1018)
27 KOG1155 Anaphase-promoting com 99.9 8E-22 1.7E-26 193.1 28.3 288 255-577 258-552 (559)
28 KOG1155 Anaphase-promoting com 99.9 9.4E-21 2E-25 185.7 35.3 314 256-593 161-551 (559)
29 KOG1173 Anaphase-promoting com 99.9 1.8E-20 3.9E-25 188.5 28.9 279 257-562 242-524 (611)
30 KOG0624 dsRNA-activated protei 99.9 1.6E-20 3.5E-25 177.0 26.8 314 236-565 44-379 (504)
31 PRK14574 hmsH outer membrane p 99.9 2.5E-19 5.4E-24 200.2 39.6 358 208-587 52-522 (822)
32 KOG2076 RNA polymerase III tra 99.9 1.3E-19 2.8E-24 191.7 32.6 308 259-581 139-515 (895)
33 PF13429 TPR_15: Tetratricopep 99.9 7.2E-22 1.6E-26 199.1 11.6 264 262-556 11-277 (280)
34 KOG0548 Molecular co-chaperone 99.9 4E-19 8.8E-24 178.3 30.8 346 207-578 19-472 (539)
35 KOG1129 TPR repeat-containing 99.9 5.6E-20 1.2E-24 172.3 20.6 235 263-562 227-464 (478)
36 PRK12370 invasion protein regu 99.9 2E-19 4.4E-24 197.7 28.7 162 261-430 260-433 (553)
37 KOG1125 TPR repeat-containing 99.8 3.4E-20 7.3E-25 187.5 18.5 243 262-559 288-530 (579)
38 KOG2076 RNA polymerase III tra 99.8 1.4E-18 3.1E-23 184.0 31.2 300 245-558 156-514 (895)
39 PRK14574 hmsH outer membrane p 99.8 4.2E-18 9E-23 190.5 36.9 351 233-602 37-503 (822)
40 PRK11189 lipoprotein NlpI; Pro 99.8 5.9E-19 1.3E-23 178.0 24.5 225 273-565 40-275 (296)
41 TIGR00540 hemY_coli hemY prote 99.8 1.2E-17 2.7E-22 177.0 35.8 297 259-578 84-399 (409)
42 COG3063 PilF Tfp pilus assembl 99.8 1.9E-18 4.1E-23 155.5 24.6 207 260-562 36-242 (250)
43 TIGR00540 hemY_coli hemY prote 99.8 6.4E-18 1.4E-22 179.2 33.0 296 237-556 91-399 (409)
44 KOG1174 Anaphase-promoting com 99.8 5.1E-18 1.1E-22 164.1 28.9 314 254-597 190-519 (564)
45 KOG1173 Anaphase-promoting com 99.8 9.3E-19 2E-23 176.2 24.5 258 254-534 273-530 (611)
46 PRK11189 lipoprotein NlpI; Pro 99.8 1.2E-18 2.6E-23 175.8 25.6 216 258-542 63-286 (296)
47 PRK12370 invasion protein regu 99.8 1.8E-18 3.8E-23 190.3 28.5 245 246-522 279-535 (553)
48 KOG1174 Anaphase-promoting com 99.8 1.8E-18 3.9E-23 167.2 24.6 280 254-564 227-508 (564)
49 TIGR02521 type_IV_pilW type IV 99.8 8.3E-18 1.8E-22 165.0 28.1 205 258-558 30-234 (234)
50 PRK10747 putative protoheme IX 99.8 5.2E-17 1.1E-21 171.2 33.6 284 246-557 102-391 (398)
51 KOG2003 TPR repeat-containing 99.8 2.4E-17 5.2E-22 160.9 28.1 191 376-589 498-700 (840)
52 PF13429 TPR_15: Tetratricopep 99.8 9.3E-20 2E-24 183.8 12.1 259 287-577 4-276 (280)
53 KOG1840 Kinesin light chain [C 99.8 4.3E-18 9.4E-23 177.7 24.6 258 254-556 194-479 (508)
54 KOG0495 HAT repeat protein [RN 99.8 1.8E-16 3.9E-21 161.7 34.5 308 257-595 514-863 (913)
55 KOG0495 HAT repeat protein [RN 99.8 2.9E-16 6.3E-21 160.2 35.8 307 254-591 545-893 (913)
56 KOG4162 Predicted calmodulin-b 99.8 5.8E-17 1.3E-21 169.0 30.7 281 258-561 432-788 (799)
57 PRK10747 putative protoheme IX 99.8 2.5E-16 5.3E-21 166.1 36.3 287 260-579 85-391 (398)
58 KOG2003 TPR repeat-containing 99.8 8.2E-17 1.8E-21 157.2 27.3 274 262-565 422-698 (840)
59 PLN03081 pentatricopeptide (PP 99.8 5.5E-16 1.2E-20 176.6 37.9 341 207-577 140-556 (697)
60 KOG0550 Molecular chaperone (D 99.8 5.7E-18 1.2E-22 164.2 17.4 274 254-559 78-353 (486)
61 PLN02789 farnesyltranstransfer 99.8 7E-17 1.5E-21 162.0 25.3 219 258-540 36-268 (320)
62 COG2956 Predicted N-acetylgluc 99.8 3.9E-16 8.4E-21 146.9 27.7 268 300-588 42-321 (389)
63 KOG4162 Predicted calmodulin-b 99.8 9.4E-16 2E-20 160.1 31.8 353 207-584 340-789 (799)
64 COG3063 PilF Tfp pilus assembl 99.7 3.9E-16 8.4E-21 140.7 22.1 161 404-587 70-245 (250)
65 COG2956 Predicted N-acetylgluc 99.7 6.2E-15 1.3E-19 138.9 29.1 206 261-479 71-281 (389)
66 KOG1125 TPR repeat-containing 99.7 1.1E-16 2.3E-21 162.4 18.6 227 297-581 289-530 (579)
67 PLN03218 maturation of RBCL 1; 99.7 4.4E-14 9.6E-19 162.8 40.6 291 258-578 471-783 (1060)
68 PLN03218 maturation of RBCL 1; 99.7 6.7E-14 1.5E-18 161.3 40.9 315 206-557 453-784 (1060)
69 PLN02789 farnesyltranstransfer 99.7 1.1E-15 2.5E-20 153.3 22.8 212 273-565 34-259 (320)
70 PLN03081 pentatricopeptide (PP 99.7 7.1E-15 1.5E-19 167.6 32.1 290 236-557 265-558 (697)
71 TIGR02521 type_IV_pilW type IV 99.7 2.6E-15 5.6E-20 147.3 24.9 138 406-565 68-207 (234)
72 KOG1156 N-terminal acetyltrans 99.7 2E-14 4.4E-19 147.4 30.3 337 208-561 25-439 (700)
73 KOG1127 TPR repeat-containing 99.7 1.1E-14 2.4E-19 155.4 28.3 331 254-596 487-897 (1238)
74 KOG1127 TPR repeat-containing 99.7 1.7E-15 3.7E-20 161.5 22.0 330 205-565 507-888 (1238)
75 PLN03077 Protein ECB2; Provisi 99.7 2.4E-14 5.3E-19 167.3 31.5 321 238-599 331-707 (857)
76 cd05804 StaR_like StaR_like; a 99.7 5.2E-14 1.1E-18 147.8 30.8 210 255-478 2-217 (355)
77 KOG1840 Kinesin light chain [C 99.7 7.9E-15 1.7E-19 153.4 23.6 231 289-564 195-450 (508)
78 KOG1130 Predicted G-alpha GTPa 99.7 1.8E-15 4E-20 146.4 16.5 284 262-556 20-344 (639)
79 KOG1156 N-terminal acetyltrans 99.7 4.1E-13 8.8E-18 138.0 33.3 336 201-557 52-469 (700)
80 TIGR03302 OM_YfiO outer membra 99.6 2.6E-14 5.7E-19 140.3 22.8 193 254-478 28-234 (235)
81 PLN03077 Protein ECB2; Provisi 99.6 3.3E-13 7.2E-18 157.7 35.8 293 236-555 228-582 (857)
82 KOG0907 Thioredoxin [Posttrans 99.6 3E-15 6.5E-20 122.8 11.4 82 630-711 22-105 (106)
83 KOG0908 Thioredoxin-like prote 99.6 1.3E-15 2.9E-20 137.6 10.0 100 613-712 3-106 (288)
84 KOG0910 Thioredoxin-like prote 99.6 3.2E-15 6.9E-20 126.5 11.1 101 612-712 43-148 (150)
85 TIGR03302 OM_YfiO outer membra 99.6 1.2E-13 2.7E-18 135.5 24.2 196 289-559 29-235 (235)
86 PRK15359 type III secretion sy 99.6 3E-14 6.5E-19 126.8 16.5 118 423-565 13-130 (144)
87 PRK14720 transcript cleavage f 99.6 1.7E-13 3.6E-18 151.5 25.9 280 254-586 26-314 (906)
88 KOG1130 Predicted G-alpha GTPa 99.6 6.3E-15 1.4E-19 142.7 12.7 284 261-555 57-383 (639)
89 PF12569 NARP1: NMDA receptor- 99.6 6.6E-12 1.4E-16 133.4 32.1 279 258-559 3-337 (517)
90 KOG0553 TPR repeat-containing 99.6 5.6E-14 1.2E-18 132.4 13.6 103 259-362 81-183 (304)
91 PRK15359 type III secretion sy 99.5 2.3E-13 5E-18 121.1 15.7 100 262-362 27-126 (144)
92 cd05804 StaR_like StaR_like; a 99.5 2E-12 4.3E-17 135.8 24.4 205 289-558 2-217 (355)
93 cd02954 DIM1 Dim1 family; Dim1 99.5 6.3E-14 1.4E-18 115.7 9.8 83 620-702 3-91 (114)
94 PHA02278 thioredoxin-like prot 99.5 1.7E-13 3.8E-18 112.7 11.8 90 618-707 3-100 (103)
95 KOG2376 Signal recognition par 99.5 1.4E-10 3E-15 118.5 34.6 373 204-605 26-514 (652)
96 PRK10370 formate-dependent nit 99.5 1.6E-12 3.6E-17 122.0 19.1 156 372-561 20-178 (198)
97 cd02965 HyaE HyaE family; HyaE 99.5 4E-13 8.7E-18 110.0 10.9 87 620-706 18-110 (111)
98 cd02989 Phd_like_TxnDC9 Phosdu 99.5 8E-13 1.7E-17 111.7 13.0 100 608-708 2-112 (113)
99 KOG1128 Uncharacterized conser 99.5 1.6E-12 3.5E-17 135.5 17.9 225 256-559 395-619 (777)
100 COG3071 HemY Uncharacterized e 99.5 2.4E-10 5.3E-15 111.8 31.5 282 247-556 103-390 (400)
101 PRK15179 Vi polysaccharide bio 99.5 1E-11 2.2E-16 137.1 24.5 152 391-565 75-226 (694)
102 cd02985 TRX_CDSP32 TRX family, 99.5 7.8E-13 1.7E-17 110.3 12.1 94 618-711 2-102 (103)
103 KOG2376 Signal recognition par 99.5 4.4E-10 9.6E-15 114.9 33.3 288 247-551 31-400 (652)
104 PRK10370 formate-dependent nit 99.4 3.1E-12 6.6E-17 120.2 16.4 110 254-364 68-180 (198)
105 KOG0553 TPR repeat-containing 99.4 8.9E-13 1.9E-17 124.4 12.1 107 493-599 81-199 (304)
106 PRK14720 transcript cleavage f 99.4 2.7E-11 5.9E-16 134.2 25.5 220 287-568 25-264 (906)
107 KOG1915 Cell cycle control pro 99.4 1.3E-09 2.8E-14 108.4 33.6 368 202-583 85-541 (677)
108 PRK15363 pathogenicity island 99.4 5.1E-12 1.1E-16 109.6 15.0 102 254-355 29-131 (157)
109 COG5010 TadD Flp pilus assembl 99.4 1.6E-11 3.5E-16 113.9 19.1 175 278-517 52-226 (257)
110 cd03065 PDI_b_Calsequestrin_N 99.4 1.6E-12 3.5E-17 109.4 11.5 93 618-711 15-118 (120)
111 COG5010 TadD Flp pilus assembl 99.4 2.4E-11 5.3E-16 112.7 19.7 180 309-553 49-228 (257)
112 COG3118 Thioredoxin domain-con 99.4 9.9E-13 2.1E-17 124.1 10.6 95 618-712 29-130 (304)
113 cd02948 TRX_NDPK TRX domain, T 99.4 2.9E-12 6.2E-17 106.7 12.2 94 616-710 4-101 (102)
114 KOG1915 Cell cycle control pro 99.4 3.7E-09 7.9E-14 105.2 35.3 205 259-480 73-277 (677)
115 PRK04841 transcriptional regul 99.4 2.9E-10 6.3E-15 134.8 33.1 286 257-556 407-720 (903)
116 PRK15179 Vi polysaccharide bio 99.4 2.8E-11 6.1E-16 133.5 22.4 144 286-481 79-222 (694)
117 TIGR02552 LcrH_SycD type III s 99.4 1.4E-11 3E-16 109.4 15.9 119 424-564 4-122 (135)
118 PLN00410 U5 snRNP protein, DIM 99.4 4.8E-12 1E-16 108.9 11.9 98 614-711 6-119 (142)
119 KOG3060 Uncharacterized conser 99.4 5E-10 1.1E-14 102.8 25.5 171 372-565 56-229 (289)
120 PF00085 Thioredoxin: Thioredo 99.4 7.1E-12 1.5E-16 105.3 12.5 94 618-711 5-103 (103)
121 KOG3785 Uncharacterized conser 99.4 6.7E-10 1.4E-14 106.3 26.8 272 262-554 60-420 (557)
122 cd02987 Phd_like_Phd Phosducin 99.4 8.7E-12 1.9E-16 113.8 13.6 103 607-711 59-174 (175)
123 KOG1128 Uncharacterized conser 99.4 5.9E-11 1.3E-15 124.1 20.1 205 296-579 401-617 (777)
124 TIGR02552 LcrH_SycD type III s 99.3 3.6E-11 7.8E-16 106.6 15.8 108 254-362 12-119 (135)
125 KOG3060 Uncharacterized conser 99.3 4E-10 8.7E-15 103.5 22.4 205 273-541 26-239 (289)
126 PF12569 NARP1: NMDA receptor- 99.3 9E-10 2E-14 117.3 28.6 252 292-557 3-292 (517)
127 cd02986 DLP Dim1 family, Dim1- 99.3 1.2E-11 2.5E-16 101.1 10.9 90 620-709 3-108 (114)
128 PRK15363 pathogenicity island 99.3 5.4E-11 1.2E-15 103.3 15.5 102 446-559 34-135 (157)
129 PRK04841 transcriptional regul 99.3 6.1E-10 1.3E-14 132.1 29.2 291 260-562 453-766 (903)
130 cd02957 Phd_like Phosducin (Ph 99.3 2E-11 4.3E-16 103.8 11.7 84 614-699 7-95 (113)
131 PF04733 Coatomer_E: Coatomer 99.3 7E-11 1.5E-15 117.5 17.3 272 267-576 9-286 (290)
132 cd02984 TRX_PICOT TRX domain, 99.3 2.6E-11 5.7E-16 100.4 11.1 90 620-709 3-97 (97)
133 COG3071 HemY Uncharacterized e 99.3 9.4E-09 2E-13 100.9 29.9 287 259-577 84-389 (400)
134 PTZ00051 thioredoxin; Provisio 99.3 4.1E-11 8.9E-16 99.4 11.3 94 613-706 2-97 (98)
135 KOG4648 Uncharacterized conser 99.3 5.3E-12 1.1E-16 119.9 6.6 232 262-526 100-334 (536)
136 PRK10996 thioredoxin 2; Provis 99.3 5.5E-11 1.2E-15 104.8 12.5 94 618-711 41-138 (139)
137 KOG3785 Uncharacterized conser 99.3 1.8E-09 4E-14 103.4 23.2 269 268-552 31-341 (557)
138 PTZ00062 glutaredoxin; Provisi 99.3 4.9E-11 1.1E-15 110.3 11.5 87 618-712 5-94 (204)
139 cd03003 PDI_a_ERdj5_N PDIa fam 99.3 4.4E-11 9.5E-16 99.7 10.2 90 618-707 7-100 (101)
140 PLN03088 SGT1, suppressor of 99.2 1.6E-10 3.4E-15 119.4 16.2 101 261-362 4-104 (356)
141 cd03006 PDI_a_EFP1_N PDIa fami 99.2 5E-11 1.1E-15 99.9 9.9 90 619-708 16-113 (113)
142 COG4783 Putative Zn-dependent 99.2 1.3E-09 2.8E-14 109.8 21.6 162 254-484 301-462 (484)
143 cd02963 TRX_DnaJ TRX domain, D 99.2 1E-10 2.3E-15 98.9 11.0 92 619-710 11-110 (111)
144 cd02956 ybbN ybbN protein fami 99.2 1.2E-10 2.6E-15 96.2 10.7 89 621-709 2-96 (96)
145 PRK10866 outer membrane biogen 99.2 5E-09 1.1E-13 101.7 23.6 185 256-472 29-237 (243)
146 PF04733 Coatomer_E: Coatomer 99.2 6.2E-10 1.3E-14 110.7 16.7 250 301-588 9-275 (290)
147 PRK09381 trxA thioredoxin; Pro 99.2 3.5E-10 7.6E-15 95.8 12.9 93 620-712 11-108 (109)
148 KOG4340 Uncharacterized conser 99.2 1.9E-09 4.1E-14 101.0 18.3 217 269-551 20-265 (459)
149 cd02999 PDI_a_ERp44_like PDIa 99.2 8.6E-11 1.9E-15 97.0 8.6 79 629-708 18-100 (100)
150 PF14938 SNAP: Soluble NSF att 99.2 7.6E-10 1.6E-14 111.0 16.9 196 308-564 30-233 (282)
151 PLN03088 SGT1, suppressor of 99.2 3.9E-10 8.4E-15 116.5 14.8 104 450-565 5-108 (356)
152 cd03004 PDI_a_ERdj5_C PDIa fam 99.2 2.1E-10 4.5E-15 96.3 10.1 91 618-708 7-104 (104)
153 PF13525 YfiO: Outer membrane 99.2 4.3E-09 9.3E-14 99.8 20.2 179 257-467 3-198 (203)
154 COG4783 Putative Zn-dependent 99.2 9.3E-09 2E-13 103.7 23.0 71 290-361 303-373 (484)
155 KOG1941 Acetylcholine receptor 99.2 1.7E-09 3.6E-14 104.0 16.7 290 259-558 6-322 (518)
156 cd02975 PfPDO_like_N Pyrococcu 99.1 4E-10 8.7E-15 95.3 10.8 90 622-711 15-109 (113)
157 PRK02603 photosystem I assembl 99.1 1.6E-09 3.4E-14 100.2 15.6 119 256-401 32-153 (172)
158 PF13414 TPR_11: TPR repeat; P 99.1 2.4E-10 5.3E-15 87.7 8.3 67 258-324 2-69 (69)
159 cd02988 Phd_like_VIAF Phosduci 99.1 1.6E-09 3.4E-14 100.3 15.0 100 607-711 79-191 (192)
160 PRK11509 hydrogenase-1 operon 99.1 6.9E-10 1.5E-14 93.9 11.4 92 621-712 26-124 (132)
161 KOG2047 mRNA splicing factor [ 99.1 3E-07 6.6E-12 95.2 32.4 302 260-585 249-658 (835)
162 KOG1941 Acetylcholine receptor 99.1 3.8E-09 8.2E-14 101.6 17.3 284 262-556 46-360 (518)
163 PRK10866 outer membrane biogen 99.1 3.3E-08 7.2E-13 96.0 24.3 196 292-552 31-237 (243)
164 cd02994 PDI_a_TMX PDIa family, 99.1 6.7E-10 1.5E-14 92.6 10.7 89 619-710 8-101 (101)
165 cd02949 TRX_NTR TRX domain, no 99.1 7.7E-10 1.7E-14 91.3 10.9 83 627-709 11-97 (97)
166 cd02962 TMX2 TMX2 family; comp 99.1 6.8E-10 1.5E-14 98.1 11.1 80 619-698 35-126 (152)
167 KOG2047 mRNA splicing factor [ 99.1 9.2E-07 2E-11 91.8 34.9 201 382-593 361-592 (835)
168 cd02996 PDI_a_ERp44 PDIa famil 99.1 6.8E-10 1.5E-14 93.8 10.5 91 618-708 7-108 (108)
169 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.9E-09 6.2E-14 92.0 14.6 103 259-362 2-110 (119)
170 PRK02603 photosystem I assembl 99.1 4.9E-09 1.1E-13 96.9 16.7 122 445-583 33-154 (172)
171 COG4785 NlpI Lipoprotein NlpI, 99.1 1.9E-08 4.2E-13 90.1 19.1 204 257-477 63-267 (297)
172 PF13525 YfiO: Outer membrane 99.1 2.6E-08 5.6E-13 94.5 21.5 184 292-547 4-198 (203)
173 TIGR02795 tol_pal_ybgF tol-pal 99.1 3.3E-09 7.1E-14 91.7 14.2 105 447-563 2-112 (119)
174 KOG4340 Uncharacterized conser 99.1 1.4E-08 3E-13 95.3 18.6 275 254-549 39-332 (459)
175 CHL00033 ycf3 photosystem I as 99.1 6.8E-09 1.5E-13 95.7 16.7 94 259-352 35-138 (168)
176 TIGR01068 thioredoxin thioredo 99.1 1.6E-09 3.5E-14 90.5 11.4 92 620-711 4-100 (101)
177 cd03005 PDI_a_ERp46 PDIa famil 99.1 9.4E-10 2E-14 92.1 9.7 89 619-708 7-102 (102)
178 PF14938 SNAP: Soluble NSF att 99.1 3.1E-09 6.7E-14 106.6 15.0 212 260-478 36-268 (282)
179 TIGR01295 PedC_BrcD bacterioci 99.1 1.7E-09 3.6E-14 92.5 11.0 91 618-709 12-121 (122)
180 PF13414 TPR_11: TPR repeat; P 99.0 8.3E-10 1.8E-14 84.7 8.1 63 496-558 6-69 (69)
181 KOG4648 Uncharacterized conser 99.0 1.2E-10 2.6E-15 110.8 3.9 211 330-593 100-345 (536)
182 cd02950 TxlA TRX-like protein 99.0 1.7E-09 3.6E-14 95.6 10.7 92 621-712 12-110 (142)
183 COG4235 Cytochrome c biogenesi 99.0 6E-09 1.3E-13 99.7 15.0 109 254-363 151-262 (287)
184 cd00189 TPR Tetratricopeptide 99.0 3.2E-09 6.9E-14 87.3 11.8 98 261-359 2-99 (100)
185 KOG3081 Vesicle coat complex C 99.0 3.3E-07 7.1E-12 85.3 25.4 272 267-577 16-293 (299)
186 TIGR01126 pdi_dom protein disu 99.0 2E-09 4.3E-14 90.1 10.1 93 619-711 3-101 (102)
187 CHL00033 ycf3 photosystem I as 99.0 1.2E-08 2.6E-13 94.0 16.1 116 446-585 34-156 (168)
188 cd02953 DsbDgamma DsbD gamma f 99.0 1.3E-09 2.9E-14 91.3 8.8 90 620-709 2-104 (104)
189 KOG0543 FKBP-type peptidyl-pro 99.0 8.2E-09 1.8E-13 102.2 15.2 113 259-372 208-335 (397)
190 cd00189 TPR Tetratricopeptide 99.0 5.1E-09 1.1E-13 86.0 12.0 99 449-559 2-100 (100)
191 PRK15331 chaperone protein Sic 99.0 5.8E-09 1.3E-13 91.1 12.5 106 254-361 32-137 (165)
192 PF12895 Apc3: Anaphase-promot 99.0 1.5E-09 3.2E-14 86.9 7.5 81 272-353 2-84 (84)
193 cd02997 PDI_a_PDIR PDIa family 99.0 3.7E-09 8E-14 88.8 10.1 90 619-708 7-104 (104)
194 PF13432 TPR_16: Tetratricopep 99.0 2.8E-09 6.1E-14 80.5 8.3 64 498-561 2-65 (65)
195 cd02947 TRX_family TRX family; 99.0 6.7E-09 1.5E-13 85.0 11.0 89 621-709 2-93 (93)
196 PTZ00443 Thioredoxin domain-co 99.0 6.9E-09 1.5E-13 98.0 12.0 94 618-711 36-138 (224)
197 PF09976 TPR_21: Tetratricopep 98.9 5.9E-08 1.3E-12 86.8 17.2 126 262-430 14-145 (145)
198 cd03001 PDI_a_P5 PDIa family, 98.9 7.5E-09 1.6E-13 86.7 10.7 90 619-708 7-102 (103)
199 KOG0543 FKBP-type peptidyl-pro 98.9 3.6E-08 7.8E-13 97.7 16.8 116 449-565 210-329 (397)
200 PF13432 TPR_16: Tetratricopep 98.9 3.4E-09 7.4E-14 80.1 7.5 64 264-327 2-65 (65)
201 KOG1070 rRNA processing protei 98.9 2E-07 4.4E-12 104.3 24.1 242 307-579 1438-1681(1710)
202 cd03002 PDI_a_MPD1_like PDI fa 98.9 5.7E-09 1.2E-13 88.4 9.7 91 619-709 7-109 (109)
203 KOG4234 TPR repeat-containing 98.9 2.1E-08 4.5E-13 88.7 12.7 103 259-362 95-202 (271)
204 COG0457 NrfG FOG: TPR repeat [ 98.9 1.7E-06 3.7E-11 84.6 28.3 227 272-559 36-268 (291)
205 cd03000 PDI_a_TMX3 PDIa family 98.9 8.4E-09 1.8E-13 86.4 9.7 90 620-711 7-103 (104)
206 PRK11906 transcriptional regul 98.9 6.8E-08 1.5E-12 98.3 17.6 163 261-474 257-434 (458)
207 cd02961 PDI_a_family Protein D 98.9 9.2E-09 2E-13 85.8 9.7 90 619-708 5-101 (101)
208 PF12895 Apc3: Anaphase-promot 98.9 6.5E-09 1.4E-13 83.2 8.1 81 460-553 2-84 (84)
209 COG4785 NlpI Lipoprotein NlpI, 98.9 1.6E-07 3.5E-12 84.3 16.6 222 292-542 64-290 (297)
210 COG3898 Uncharacterized membra 98.9 7.5E-06 1.6E-10 80.3 29.0 269 256-556 117-392 (531)
211 PRK10803 tol-pal system protei 98.9 1.1E-07 2.3E-12 93.0 16.6 104 258-362 141-251 (263)
212 PRK10153 DNA-binding transcrip 98.8 1E-07 2.2E-12 102.6 17.6 141 254-402 332-487 (517)
213 PRK15331 chaperone protein Sic 98.8 1.3E-07 2.8E-12 82.8 14.8 119 447-580 37-155 (165)
214 cd02952 TRP14_like Human TRX-r 98.8 2E-08 4.3E-13 84.4 9.3 92 617-708 7-118 (119)
215 PRK10153 DNA-binding transcrip 98.8 7.4E-08 1.6E-12 103.7 16.0 137 406-565 342-491 (517)
216 KOG3081 Vesicle coat complex C 98.8 2.2E-06 4.8E-11 79.9 22.9 246 301-586 16-279 (299)
217 PF09976 TPR_21: Tetratricopep 98.8 3.6E-07 7.9E-12 81.7 17.6 120 305-474 23-145 (145)
218 COG0457 NrfG FOG: TPR repeat [ 98.8 3.7E-06 7.9E-11 82.2 26.5 205 259-525 59-268 (291)
219 COG4235 Cytochrome c biogenesi 98.8 2.8E-07 6E-12 88.5 17.3 123 274-403 137-262 (287)
220 PRK11906 transcriptional regul 98.8 2.8E-07 6.1E-12 93.9 18.3 148 407-576 259-434 (458)
221 PF12688 TPR_5: Tetratrico pep 98.8 2.1E-07 4.5E-12 78.6 14.6 96 260-355 2-103 (120)
222 KOG4234 TPR repeat-containing 98.8 9.3E-08 2E-12 84.7 12.8 108 449-563 97-204 (271)
223 PF12688 TPR_5: Tetratrico pep 98.8 2E-07 4.3E-12 78.7 14.1 113 448-573 2-117 (120)
224 PRK10803 tol-pal system protei 98.8 1.3E-07 2.9E-12 92.3 14.9 106 446-563 141-253 (263)
225 KOG1070 rRNA processing protei 98.8 2.1E-06 4.5E-11 96.6 25.5 237 275-540 1440-1683(1710)
226 cd02998 PDI_a_ERp38 PDIa famil 98.8 2.8E-08 6.1E-13 83.6 8.9 89 620-708 8-105 (105)
227 cd02982 PDI_b'_family Protein 98.8 4.2E-08 9E-13 82.1 9.7 83 629-711 12-102 (103)
228 TIGR00411 redox_disulf_1 small 98.7 7.5E-08 1.6E-12 76.7 9.9 75 633-711 3-81 (82)
229 KOG3617 WD40 and TPR repeat-co 98.7 3.9E-05 8.5E-10 82.0 32.1 76 444-519 1077-1171(1416)
230 cd02995 PDI_a_PDI_a'_C PDIa fa 98.7 5E-08 1.1E-12 81.9 9.0 89 619-708 7-104 (104)
231 TIGR02187 GlrX_arch Glutaredox 98.7 7.9E-08 1.7E-12 92.0 10.6 83 629-711 19-110 (215)
232 PHA02125 thioredoxin-like prot 98.7 9.7E-08 2.1E-12 74.1 8.9 68 633-708 2-73 (75)
233 PF14559 TPR_19: Tetratricopep 98.7 5.3E-08 1.1E-12 74.3 7.3 68 269-336 1-68 (68)
234 KOG2796 Uncharacterized conser 98.7 4.8E-06 1E-10 77.3 21.0 233 292-561 68-320 (366)
235 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.1E-07 6.6E-12 94.4 14.9 121 409-554 175-295 (395)
236 cd02951 SoxW SoxW family; SoxW 98.7 1.4E-07 3.1E-12 82.0 10.6 92 621-712 5-119 (125)
237 KOG3617 WD40 and TPR repeat-co 98.7 3.1E-05 6.6E-10 82.8 29.0 184 260-475 801-995 (1416)
238 COG4105 ComL DNA uptake lipopr 98.6 1.2E-05 2.5E-10 75.7 22.3 193 257-481 32-238 (254)
239 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.5E-07 5.4E-12 95.1 12.3 111 245-355 186-296 (395)
240 KOG2053 Mitochondrial inherita 98.6 3.7E-05 7.9E-10 83.5 28.7 231 269-526 19-259 (932)
241 PF13371 TPR_9: Tetratricopept 98.6 1.8E-07 3.9E-12 72.5 8.6 69 266-334 2-70 (73)
242 KOG1672 ATP binding protein [P 98.6 2.4E-07 5.1E-12 81.5 9.9 93 606-699 62-156 (211)
243 COG4700 Uncharacterized protei 98.6 5.1E-06 1.1E-10 73.0 17.8 146 386-555 74-221 (251)
244 KOG1586 Protein required for f 98.6 6.4E-06 1.4E-10 75.2 18.5 151 404-565 75-233 (288)
245 KOG4555 TPR repeat-containing 98.6 2.7E-06 5.8E-11 70.0 14.5 100 261-361 45-148 (175)
246 COG4105 ComL DNA uptake lipopr 98.6 1.3E-05 2.9E-10 75.3 21.2 186 368-560 34-237 (254)
247 PF13371 TPR_9: Tetratricopept 98.6 2.2E-07 4.7E-12 72.1 8.0 67 499-565 1-67 (73)
248 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 3.4E-07 7.3E-12 73.2 9.1 73 629-705 12-87 (89)
249 PF13512 TPR_18: Tetratricopep 98.6 2.3E-06 5.1E-11 73.3 14.5 105 257-362 8-133 (142)
250 cd02993 PDI_a_APS_reductase PD 98.6 4.2E-07 9E-12 76.7 9.8 89 620-708 9-109 (109)
251 TIGR02187 GlrX_arch Glutaredox 98.6 3.4E-07 7.4E-12 87.7 10.3 78 630-710 134-214 (215)
252 KOG2796 Uncharacterized conser 98.6 7.1E-05 1.5E-09 69.7 24.5 243 259-537 69-333 (366)
253 KOG4555 TPR repeat-containing 98.6 3.2E-06 7E-11 69.6 14.0 102 449-562 45-150 (175)
254 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4.2E-07 9E-12 92.5 10.7 70 254-323 70-142 (453)
255 cd03007 PDI_a_ERp29_N PDIa fam 98.5 5.7E-07 1.2E-11 74.8 9.3 91 618-711 7-115 (116)
256 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4.6E-07 9.9E-12 92.2 10.2 69 476-556 70-141 (453)
257 PF14559 TPR_19: Tetratricopep 98.5 4.4E-07 9.5E-12 69.2 7.8 64 459-534 3-66 (68)
258 COG4700 Uncharacterized protei 98.5 1.3E-05 2.9E-10 70.5 17.0 154 339-521 68-221 (251)
259 COG1729 Uncharacterized protei 98.5 3.9E-06 8.5E-11 79.7 14.9 102 260-362 142-249 (262)
260 KOG2471 TPR repeat-containing 98.5 2.4E-05 5.3E-10 78.9 20.8 107 255-362 236-369 (696)
261 COG3898 Uncharacterized membra 98.5 0.00035 7.6E-09 68.9 28.1 269 262-565 87-367 (531)
262 COG1729 Uncharacterized protei 98.5 2.3E-06 5E-11 81.3 13.0 106 448-565 142-253 (262)
263 PF13512 TPR_18: Tetratricopep 98.5 4.7E-06 1E-10 71.4 13.6 128 445-588 8-138 (142)
264 PF06552 TOM20_plant: Plant sp 98.5 1.5E-06 3.3E-11 76.7 10.8 105 463-592 7-123 (186)
265 cd02992 PDI_a_QSOX PDIa family 98.5 3.5E-07 7.6E-12 77.6 6.5 80 619-699 8-96 (114)
266 PF02114 Phosducin: Phosducin; 98.5 2.7E-06 5.9E-11 82.6 13.5 102 608-711 123-237 (265)
267 KOG4642 Chaperone-dependent E3 98.5 5.1E-07 1.1E-11 82.5 7.6 96 260-355 11-106 (284)
268 TIGR00424 APS_reduc 5'-adenyly 98.4 1.5E-06 3.3E-11 90.9 12.0 94 618-711 357-462 (463)
269 KOG1586 Protein required for f 98.4 0.00016 3.4E-09 66.4 23.1 185 261-485 36-233 (288)
270 PTZ00102 disulphide isomerase; 98.4 1.2E-06 2.6E-11 95.8 11.8 94 618-712 38-138 (477)
271 KOG2053 Mitochondrial inherita 98.4 0.0009 2E-08 73.1 32.6 295 254-559 38-340 (932)
272 PLN02309 5'-adenylylsulfate re 98.4 1.8E-06 3.9E-11 90.3 12.0 94 618-711 351-456 (457)
273 TIGR01130 ER_PDI_fam protein d 98.4 1.3E-06 2.7E-11 95.4 11.6 94 618-711 7-108 (462)
274 KOG0190 Protein disulfide isom 98.4 7.6E-07 1.7E-11 92.2 9.0 98 615-712 28-132 (493)
275 PF13424 TPR_12: Tetratricopep 98.4 4.7E-07 1E-11 71.2 4.7 62 294-355 6-74 (78)
276 cd02973 TRX_GRX_like Thioredox 98.4 1.4E-06 3E-11 66.1 7.2 59 632-692 2-62 (67)
277 PF06552 TOM20_plant: Plant sp 98.4 6.6E-06 1.4E-10 72.8 11.8 87 275-362 7-114 (186)
278 PF13424 TPR_12: Tetratricopep 98.3 6E-07 1.3E-11 70.6 4.7 67 256-322 2-75 (78)
279 TIGR00412 redox_disulf_2 small 98.3 4.5E-06 9.8E-11 64.8 8.9 64 639-709 10-76 (76)
280 PTZ00102 disulphide isomerase; 98.3 2.7E-06 5.8E-11 93.1 10.2 94 619-712 364-465 (477)
281 PF04184 ST7: ST7 protein; In 98.3 0.00027 5.9E-09 72.4 23.3 48 306-355 181-228 (539)
282 KOG0376 Serine-threonine phosp 98.3 1.7E-06 3.6E-11 87.8 7.0 105 260-365 5-109 (476)
283 KOG1585 Protein required for f 98.3 0.0004 8.7E-09 64.2 21.5 204 260-471 32-251 (308)
284 KOG0545 Aryl-hydrocarbon recep 98.2 1.4E-05 3E-10 73.5 11.2 92 495-586 180-301 (329)
285 PRK00293 dipZ thiol:disulfide 98.2 7.4E-06 1.6E-10 89.9 11.3 100 613-712 454-570 (571)
286 KOG2300 Uncharacterized conser 98.2 0.004 8.6E-08 63.5 28.7 342 201-557 20-475 (629)
287 KOG1585 Protein required for f 98.2 0.00012 2.6E-09 67.6 16.3 182 328-556 32-219 (308)
288 KOG0545 Aryl-hydrocarbon recep 98.2 6.7E-05 1.4E-09 69.1 14.0 103 259-362 178-298 (329)
289 KOG0912 Thiol-disulfide isomer 98.1 8.2E-06 1.8E-10 77.1 7.7 92 621-712 5-106 (375)
290 TIGR02740 TraF-like TraF-like 98.1 2.1E-05 4.6E-10 77.5 10.9 82 629-711 166-263 (271)
291 PF02259 FAT: FAT domain; Int 98.1 0.0019 4.1E-08 67.5 26.4 298 265-581 4-341 (352)
292 KOG4507 Uncharacterized conser 98.1 0.00017 3.6E-09 74.6 17.1 101 262-363 215-318 (886)
293 cd02959 ERp19 Endoplasmic reti 98.1 1.1E-05 2.3E-10 68.6 7.3 78 621-698 11-95 (117)
294 KOG2471 TPR repeat-containing 98.1 0.00043 9.3E-09 70.2 19.1 289 261-568 19-376 (696)
295 KOG0551 Hsp90 co-chaperone CNS 98.0 2.8E-05 6.1E-10 74.9 9.9 102 258-360 80-185 (390)
296 PF13098 Thioredoxin_2: Thiore 98.0 1.3E-05 2.9E-10 68.0 6.6 80 629-708 5-112 (112)
297 KOG3616 Selective LIM binding 98.0 0.0015 3.4E-08 69.3 22.6 269 266-560 713-1028(1636)
298 KOG0376 Serine-threonine phosp 98.0 1.3E-05 2.9E-10 81.4 7.3 102 497-598 8-121 (476)
299 PF13428 TPR_14: Tetratricopep 98.0 1.4E-05 3E-10 54.5 5.1 40 295-334 3-42 (44)
300 KOG4642 Chaperone-dependent E3 98.0 1.6E-05 3.5E-10 73.0 6.8 95 450-556 13-107 (284)
301 PF13428 TPR_14: Tetratricopep 98.0 1.8E-05 4E-10 53.8 5.5 43 259-301 1-43 (44)
302 KOG3616 Selective LIM binding 97.9 0.00054 1.2E-08 72.6 18.0 212 295-554 663-909 (1636)
303 PF10345 Cohesin_load: Cohesin 97.9 0.0087 1.9E-07 67.2 29.3 291 259-551 59-428 (608)
304 TIGR02738 TrbB type-F conjugat 97.9 8.2E-05 1.8E-09 66.2 10.5 82 629-711 50-152 (153)
305 PF13431 TPR_17: Tetratricopep 97.9 8.9E-06 1.9E-10 51.5 2.8 34 515-548 1-34 (34)
306 PF04184 ST7: ST7 protein; In 97.9 0.00041 8.8E-09 71.2 16.0 170 381-565 181-384 (539)
307 KOG1914 mRNA cleavage and poly 97.9 0.044 9.5E-07 57.0 33.4 110 245-355 36-165 (656)
308 TIGR01130 ER_PDI_fam protein d 97.9 5.2E-05 1.1E-09 82.7 10.0 92 619-712 353-454 (462)
309 PF13431 TPR_17: Tetratricopep 97.8 1.9E-05 4E-10 50.1 3.3 32 316-347 2-33 (34)
310 PRK14018 trifunctional thiored 97.8 8.9E-05 1.9E-09 78.9 10.2 83 628-710 55-171 (521)
311 KOG2610 Uncharacterized conser 97.8 0.0028 6E-08 61.5 18.8 156 379-554 114-274 (491)
312 KOG1550 Extracellular protein 97.8 0.0034 7.4E-08 69.2 22.7 276 247-559 231-541 (552)
313 cd02955 SSP411 TRX domain, SSP 97.8 0.00015 3.2E-09 61.9 9.3 79 621-699 7-100 (124)
314 PF00515 TPR_1: Tetratricopept 97.8 4.3E-05 9.3E-10 48.7 4.7 34 527-560 1-34 (34)
315 KOG0551 Hsp90 co-chaperone CNS 97.8 0.00058 1.2E-08 66.2 14.1 105 447-559 81-185 (390)
316 TIGR02196 GlrX_YruB Glutaredox 97.8 0.00012 2.6E-09 56.6 7.9 67 633-709 2-74 (74)
317 KOG4277 Uncharacterized conser 97.8 4.4E-05 9.5E-10 71.9 6.0 84 627-710 41-130 (468)
318 KOG1308 Hsp70-interacting prot 97.8 1.9E-05 4.1E-10 76.5 3.7 98 262-360 117-214 (377)
319 KOG0914 Thioredoxin-like prote 97.7 3.2E-05 6.9E-10 69.4 4.5 80 620-699 133-224 (265)
320 COG2909 MalT ATP-dependent tra 97.7 0.015 3.3E-07 64.1 25.2 254 256-520 412-686 (894)
321 cd03010 TlpA_like_DsbE TlpA-li 97.7 0.00017 3.7E-09 62.7 8.2 75 629-704 25-126 (127)
322 KOG2610 Uncharacterized conser 97.7 0.0019 4.2E-08 62.6 15.4 166 299-474 109-274 (491)
323 PF07719 TPR_2: Tetratricopept 97.7 0.00011 2.5E-09 46.7 5.1 34 527-560 1-34 (34)
324 KOG0190 Protein disulfide isom 97.7 8.4E-05 1.8E-09 77.4 6.7 91 620-712 374-473 (493)
325 PRK15412 thiol:disulfide inter 97.7 0.00034 7.5E-09 65.2 10.2 81 629-711 68-175 (185)
326 PF10300 DUF3808: Protein of u 97.6 0.0033 7.2E-08 67.6 18.9 168 336-522 197-376 (468)
327 PF00515 TPR_1: Tetratricopept 97.6 0.0001 2.2E-09 46.9 4.5 34 447-480 1-34 (34)
328 PF02259 FAT: FAT domain; Int 97.6 0.016 3.5E-07 60.6 23.7 232 250-486 20-297 (352)
329 PF05843 Suf: Suppressor of fo 97.6 0.003 6.5E-08 63.2 17.1 137 261-401 3-140 (280)
330 PF07719 TPR_2: Tetratricopept 97.6 0.00015 3.2E-09 46.2 5.1 32 260-291 2-33 (34)
331 PF05843 Suf: Suppressor of fo 97.6 0.0022 4.8E-08 64.1 16.0 135 405-561 3-141 (280)
332 PF14595 Thioredoxin_9: Thiore 97.6 0.00012 2.6E-09 63.1 5.7 81 630-711 42-128 (129)
333 TIGR00385 dsbE periplasmic pro 97.6 0.00039 8.5E-09 64.1 9.6 82 628-711 62-170 (173)
334 KOG0985 Vesicle coat protein c 97.6 0.0065 1.4E-07 67.2 19.5 57 259-320 1104-1160(1666)
335 PF03704 BTAD: Bacterial trans 97.6 0.0019 4.1E-08 57.7 13.5 94 262-355 9-124 (146)
336 KOG2300 Uncharacterized conser 97.5 0.018 4E-07 58.8 20.8 232 271-550 287-550 (629)
337 PF13281 DUF4071: Domain of un 97.5 0.021 4.5E-07 58.3 21.3 183 292-560 140-338 (374)
338 COG2909 MalT ATP-dependent tra 97.5 0.2 4.3E-06 55.7 29.9 280 256-557 344-648 (894)
339 COG3118 Thioredoxin domain-con 97.5 0.0051 1.1E-07 59.3 15.6 147 247-435 122-268 (304)
340 cd03011 TlpA_like_ScsD_MtbDsbE 97.5 0.00054 1.2E-08 59.2 8.3 78 630-708 21-122 (123)
341 KOG4507 Uncharacterized conser 97.5 0.004 8.8E-08 64.8 15.4 102 453-565 613-714 (886)
342 PRK03147 thiol-disulfide oxido 97.5 0.00086 1.9E-08 62.0 10.1 84 629-712 61-172 (173)
343 KOG0191 Thioredoxin/protein di 97.5 0.00048 1.1E-08 72.5 9.4 89 622-710 40-132 (383)
344 PF13192 Thioredoxin_3: Thiore 97.4 0.0013 2.9E-08 50.9 9.3 69 635-709 5-76 (76)
345 PF13281 DUF4071: Domain of un 97.4 0.0062 1.3E-07 62.0 16.4 171 257-435 139-337 (374)
346 PF10300 DUF3808: Protein of u 97.4 0.0088 1.9E-07 64.4 18.7 162 270-434 199-378 (468)
347 cd02958 UAS UAS family; UAS is 97.4 0.0017 3.8E-08 55.1 10.7 86 627-712 15-111 (114)
348 COG2976 Uncharacterized protei 97.4 0.01 2.2E-07 53.5 15.6 101 406-526 92-192 (207)
349 COG2143 Thioredoxin-related pr 97.4 0.00088 1.9E-08 57.1 8.4 89 621-709 34-146 (182)
350 PRK13728 conjugal transfer pro 97.4 0.0015 3.3E-08 59.2 10.1 78 633-711 73-170 (181)
351 KOG1550 Extracellular protein 97.4 0.087 1.9E-06 58.2 26.0 269 274-581 227-541 (552)
352 cd02966 TlpA_like_family TlpA- 97.3 0.00091 2E-08 56.7 8.2 70 629-698 19-116 (116)
353 PF03704 BTAD: Bacterial trans 97.3 0.0089 1.9E-07 53.3 14.5 105 451-555 10-124 (146)
354 PF10345 Cohesin_load: Cohesin 97.3 0.48 1E-05 53.4 31.5 313 261-580 102-506 (608)
355 PF07449 HyaE: Hydrogenase-1 e 97.3 0.00075 1.6E-08 55.0 6.5 80 620-699 17-101 (107)
356 KOG0911 Glutaredoxin-related p 97.3 0.00029 6.3E-09 64.4 4.6 96 613-710 3-100 (227)
357 KOG0985 Vesicle coat protein c 97.3 0.025 5.4E-07 62.8 19.4 216 265-547 1054-1269(1666)
358 KOG1308 Hsp70-interacting prot 97.3 0.00022 4.7E-09 69.4 3.7 95 454-560 121-215 (377)
359 KOG0530 Protein farnesyltransf 97.2 0.036 7.7E-07 52.3 17.6 159 413-593 53-231 (318)
360 PLN02919 haloacid dehalogenase 97.2 0.0011 2.4E-08 78.5 9.7 83 629-711 420-535 (1057)
361 PF13728 TraF: F plasmid trans 97.2 0.043 9.3E-07 52.1 18.3 78 630-708 121-214 (215)
362 PF13181 TPR_8: Tetratricopept 97.2 0.0007 1.5E-08 43.0 4.3 32 528-559 2-33 (34)
363 PF08631 SPO22: Meiosis protei 97.2 0.18 3.9E-06 50.5 23.4 122 270-398 4-151 (278)
364 COG2976 Uncharacterized protei 97.1 0.013 2.7E-07 53.0 12.7 103 449-561 91-193 (207)
365 KOG0530 Protein farnesyltransf 97.1 0.16 3.4E-06 48.2 19.9 125 268-399 52-178 (318)
366 PF13181 TPR_8: Tetratricopept 97.1 0.0011 2.4E-08 42.0 4.3 33 448-480 2-34 (34)
367 cd03009 TryX_like_TryX_NRX Try 97.1 0.0025 5.3E-08 55.8 8.0 67 630-696 19-116 (131)
368 KOG1258 mRNA processing protei 97.1 0.6 1.3E-05 49.8 32.5 101 255-355 75-179 (577)
369 COG4232 Thiol:disulfide interc 97.0 0.0024 5.3E-08 67.5 8.6 99 614-712 457-568 (569)
370 cd02964 TryX_like_family Trypa 97.0 0.0029 6.3E-08 55.3 7.9 66 630-695 18-115 (132)
371 KOG2041 WD40 repeat protein [G 97.0 0.73 1.6E-05 49.7 29.3 187 245-470 680-875 (1189)
372 PF07079 DUF1347: Protein of u 97.0 0.55 1.2E-05 48.3 34.6 123 449-576 381-543 (549)
373 PF04910 Tcf25: Transcriptiona 97.0 0.051 1.1E-06 56.2 17.8 156 320-481 33-227 (360)
374 PF04910 Tcf25: Transcriptiona 96.9 0.052 1.1E-06 56.1 17.5 160 394-565 32-231 (360)
375 TIGR02200 GlrX_actino Glutared 96.9 0.005 1.1E-07 47.9 7.9 68 633-709 2-76 (77)
376 KOG1914 mRNA cleavage and poly 96.9 0.78 1.7E-05 48.2 28.5 153 254-408 15-177 (656)
377 COG0790 FOG: TPR repeat, SEL1 96.9 0.29 6.3E-06 49.5 22.3 61 464-541 172-236 (292)
378 PF08424 NRDE-2: NRDE-2, neces 96.9 0.098 2.1E-06 53.5 18.7 124 275-398 47-184 (321)
379 KOG0191 Thioredoxin/protein di 96.8 0.0037 7.9E-08 65.9 8.5 92 620-711 152-251 (383)
380 PF12968 DUF3856: Domain of Un 96.8 0.054 1.2E-06 44.4 12.8 99 454-556 16-129 (144)
381 KOG2041 WD40 repeat protein [G 96.8 0.17 3.8E-06 54.2 19.8 224 274-553 678-936 (1189)
382 COG0790 FOG: TPR repeat, SEL1 96.8 0.49 1.1E-05 47.9 23.3 184 269-524 51-268 (292)
383 PF13176 TPR_7: Tetratricopept 96.8 0.0014 2.9E-08 42.2 2.9 27 530-556 2-28 (36)
384 cd02960 AGR Anterior Gradient 96.8 0.0038 8.2E-08 53.3 6.3 90 608-699 1-99 (130)
385 PRK11200 grxA glutaredoxin 1; 96.8 0.011 2.3E-07 47.0 8.6 73 632-711 2-82 (85)
386 KOG3783 Uncharacterized conser 96.7 0.22 4.9E-06 52.2 19.9 63 498-560 454-524 (546)
387 KOG1464 COP9 signalosome, subu 96.7 0.067 1.5E-06 50.6 14.6 200 272-477 40-261 (440)
388 KOG1310 WD40 repeat protein [G 96.7 0.0052 1.1E-07 63.3 8.0 108 254-362 369-479 (758)
389 PF04781 DUF627: Protein of un 96.7 0.015 3.3E-07 47.5 9.1 91 265-355 2-106 (111)
390 TIGR02739 TraF type-F conjugat 96.7 0.17 3.7E-06 49.0 17.6 80 631-711 152-247 (256)
391 KOG1731 FAD-dependent sulfhydr 96.7 0.0019 4.1E-08 67.4 4.5 80 610-690 38-126 (606)
392 PF08424 NRDE-2: NRDE-2, neces 96.7 0.075 1.6E-06 54.3 16.1 153 280-433 6-184 (321)
393 cd03008 TryX_like_RdCVF Trypar 96.6 0.01 2.2E-07 52.3 8.3 67 629-695 25-128 (146)
394 PF08631 SPO22: Meiosis protei 96.6 0.76 1.7E-05 46.0 22.9 203 260-474 36-273 (278)
395 cd01659 TRX_superfamily Thiore 96.6 0.0096 2.1E-07 44.0 7.1 57 634-690 2-63 (69)
396 PF13174 TPR_6: Tetratricopept 96.6 0.0043 9.3E-08 38.9 4.2 31 529-559 2-32 (33)
397 PF13174 TPR_6: Tetratricopept 96.6 0.0046 9.9E-08 38.7 4.3 31 261-291 2-32 (33)
398 COG5107 RNA14 Pre-mRNA 3'-end 96.6 1.1 2.4E-05 45.9 30.1 73 249-321 30-104 (660)
399 PF13905 Thioredoxin_8: Thiore 96.5 0.012 2.5E-07 48.0 7.7 59 631-689 3-91 (95)
400 KOG0890 Protein kinase of the 96.5 1.4 3E-05 54.7 27.2 283 262-565 1452-1793(2382)
401 cd02976 NrdH NrdH-redoxin (Nrd 96.5 0.014 2.9E-07 44.7 7.6 66 633-708 2-73 (73)
402 KOG3171 Conserved phosducin-li 96.5 0.021 4.6E-07 51.6 9.3 99 612-711 139-250 (273)
403 smart00594 UAS UAS domain. 96.5 0.03 6.4E-07 48.1 10.2 82 627-708 25-121 (122)
404 COG0526 TrxA Thiol-disulfide i 96.5 0.01 2.2E-07 50.4 7.5 80 630-709 33-121 (127)
405 KOG3824 Huntingtin interacting 96.5 0.0093 2E-07 57.2 7.5 75 262-336 119-193 (472)
406 PF09613 HrpB1_HrpK: Bacterial 96.5 0.052 1.1E-06 47.9 11.6 85 260-344 11-95 (160)
407 KOG1464 COP9 signalosome, subu 96.5 0.24 5.2E-06 47.0 16.4 226 306-541 40-286 (440)
408 KOG3824 Huntingtin interacting 96.5 0.033 7.1E-07 53.6 10.9 68 498-565 121-188 (472)
409 PF13176 TPR_7: Tetratricopept 96.4 0.0072 1.6E-07 38.8 4.4 23 330-352 2-24 (36)
410 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.43 9.3E-06 48.8 18.6 242 280-560 289-535 (660)
411 PRK10941 hypothetical protein; 96.4 0.02 4.4E-07 56.1 9.4 69 497-565 185-253 (269)
412 PF06110 DUF953: Eukaryotic pr 96.4 0.013 2.8E-07 49.2 6.9 80 630-709 20-118 (119)
413 PF12968 DUF3856: Domain of Un 96.3 0.16 3.4E-06 41.8 12.5 99 372-476 13-129 (144)
414 PF14853 Fis1_TPR_C: Fis1 C-te 96.3 0.02 4.4E-07 40.2 6.6 36 295-330 3-38 (53)
415 TIGR02183 GRXA Glutaredoxin, G 96.3 0.026 5.7E-07 44.9 8.2 72 633-711 2-81 (86)
416 cd03012 TlpA_like_DipZ_like Tl 96.2 0.026 5.6E-07 48.9 8.6 70 630-699 24-125 (126)
417 TIGR03143 AhpF_homolog putativ 96.2 0.021 4.6E-07 63.4 9.8 73 632-708 479-554 (555)
418 PF14561 TPR_20: Tetratricopep 96.2 0.055 1.2E-06 43.2 9.3 75 278-352 7-83 (90)
419 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.026 5.7E-07 39.6 6.4 43 260-302 2-44 (53)
420 TIGR02194 GlrX_NrdH Glutaredox 96.1 0.023 5.1E-07 43.4 6.7 64 635-707 3-71 (72)
421 PRK13703 conjugal pilus assemb 96.1 0.73 1.6E-05 44.5 18.1 80 631-711 145-240 (248)
422 PF04781 DUF627: Protein of un 96.1 0.074 1.6E-06 43.5 9.5 95 453-556 2-107 (111)
423 PF11009 DUF2847: Protein of u 96.0 0.049 1.1E-06 44.3 8.3 89 616-704 4-104 (105)
424 KOG0890 Protein kinase of the 96.0 2.2 4.8E-05 53.0 25.0 63 493-557 1670-1732(2382)
425 PF05768 DUF836: Glutaredoxin- 96.0 0.035 7.7E-07 43.5 7.3 73 633-709 2-81 (81)
426 PRK10941 hypothetical protein; 96.0 0.081 1.7E-06 51.9 11.3 74 262-335 184-257 (269)
427 KOG3783 Uncharacterized conser 96.0 0.5 1.1E-05 49.8 17.4 223 254-480 262-524 (546)
428 cd02983 P5_C P5 family, C-term 95.9 0.13 2.8E-06 44.6 11.2 99 614-712 5-115 (130)
429 PRK15317 alkyl hydroperoxide r 95.9 0.036 7.9E-07 61.0 9.7 77 630-710 117-196 (517)
430 PRK10329 glutaredoxin-like pro 95.9 0.079 1.7E-06 41.4 8.9 69 632-710 2-75 (81)
431 PRK10877 protein disulfide iso 95.9 0.02 4.4E-07 55.2 6.7 43 665-711 187-230 (232)
432 PF09613 HrpB1_HrpK: Bacterial 95.9 0.16 3.5E-06 44.8 11.6 85 448-544 11-95 (160)
433 KOG1258 mRNA processing protei 95.9 3.3 7.1E-05 44.5 32.5 365 201-593 56-485 (577)
434 TIGR02180 GRX_euk Glutaredoxin 95.8 0.029 6.2E-07 44.4 6.5 58 633-693 1-65 (84)
435 smart00028 TPR Tetratricopepti 95.8 0.015 3.2E-07 35.7 3.9 32 528-559 2-33 (34)
436 KOG3170 Conserved phosducin-li 95.7 0.14 2.9E-06 46.1 10.4 100 607-711 88-200 (240)
437 TIGR02661 MauD methylamine deh 95.6 0.09 2E-06 49.1 9.9 82 629-711 74-178 (189)
438 COG4976 Predicted methyltransf 95.6 0.019 4.2E-07 52.9 4.8 61 501-561 3-63 (287)
439 PF09986 DUF2225: Uncharacteri 95.5 0.11 2.4E-06 49.2 10.0 74 327-434 118-196 (214)
440 cd03072 PDI_b'_ERp44 PDIb' fam 95.5 0.12 2.7E-06 43.2 9.1 89 624-712 11-108 (111)
441 PF10602 RPN7: 26S proteasome 95.5 0.23 5E-06 45.7 11.7 96 260-355 37-141 (177)
442 TIGR03140 AhpF alkyl hydropero 95.4 0.069 1.5E-06 58.8 9.7 77 630-710 118-197 (515)
443 TIGR02561 HrpB1_HrpK type III 95.4 0.24 5.1E-06 43.0 10.6 84 261-344 12-95 (153)
444 smart00028 TPR Tetratricopepti 95.4 0.026 5.7E-07 34.5 3.9 31 261-291 3-33 (34)
445 KOG3414 Component of the U4/U6 95.4 0.22 4.7E-06 41.2 9.7 90 620-709 12-117 (142)
446 TIGR01626 ytfJ_HI0045 conserve 95.4 0.11 2.4E-06 47.6 9.1 79 629-709 59-177 (184)
447 PF10602 RPN7: 26S proteasome 95.4 0.46 1E-05 43.6 13.3 108 403-523 36-143 (177)
448 PF14561 TPR_20: Tetratricopep 95.3 0.23 5.1E-06 39.6 9.8 47 514-560 9-55 (90)
449 COG4649 Uncharacterized protei 95.3 0.94 2E-05 40.3 14.0 139 382-538 72-211 (221)
450 PF13899 Thioredoxin_7: Thiore 95.3 0.049 1.1E-06 42.8 5.9 65 623-688 11-81 (82)
451 COG5159 RPN6 26S proteasome re 95.2 3.2 6.8E-05 40.1 21.0 205 263-476 7-235 (421)
452 PF09986 DUF2225: Uncharacteri 95.1 0.19 4.1E-06 47.7 10.2 101 381-481 90-199 (214)
453 cd02967 mauD Methylamine utili 95.1 0.045 9.8E-07 46.3 5.5 36 629-664 21-59 (114)
454 PTZ00056 glutathione peroxidas 95.0 0.13 2.8E-06 48.4 8.8 82 630-711 40-177 (199)
455 PRK11619 lytic murein transgly 95.0 8.1 0.00018 43.6 28.2 257 271-555 111-374 (644)
456 KOG3807 Predicted membrane pro 94.9 2.7 5.8E-05 41.4 17.2 92 384-478 200-306 (556)
457 COG4976 Predicted methyltransf 94.9 0.04 8.6E-07 50.9 4.8 56 305-361 7-62 (287)
458 KOG1839 Uncharacterized protei 94.9 0.19 4.1E-06 58.3 11.1 180 257-474 930-1126(1236)
459 PF08534 Redoxin: Redoxin; In 94.8 0.19 4.2E-06 44.6 9.1 71 629-699 28-134 (146)
460 KOG1463 26S proteasome regulat 94.7 5 0.00011 39.9 21.8 172 405-591 130-329 (411)
461 KOG2422 Uncharacterized conser 94.7 2.4 5.2E-05 45.1 17.4 100 369-479 343-451 (665)
462 KOG2396 HAT (Half-A-TPR) repea 94.7 1 2.2E-05 47.0 14.5 90 464-565 88-178 (568)
463 KOG1463 26S proteasome regulat 94.7 5.2 0.00011 39.8 23.4 284 262-559 7-319 (411)
464 KOG3425 Uncharacterized conser 94.6 0.14 3.1E-06 41.9 6.7 51 639-689 45-104 (128)
465 PLN02412 probable glutathione 94.6 0.29 6.3E-06 44.6 9.7 82 630-711 30-163 (167)
466 TIGR02190 GlrX-dom Glutaredoxi 94.5 0.23 5E-06 38.7 7.8 67 630-708 7-78 (79)
467 PF13848 Thioredoxin_6: Thiore 94.5 0.52 1.1E-05 43.8 11.7 91 620-710 85-184 (184)
468 PLN02399 phospholipid hydroper 94.5 0.32 6.9E-06 46.8 10.1 83 630-712 100-234 (236)
469 cd02969 PRX_like1 Peroxiredoxi 94.5 0.36 7.8E-06 44.3 10.3 83 629-711 25-151 (171)
470 PF00462 Glutaredoxin: Glutare 94.5 0.19 4.1E-06 36.6 6.7 54 633-693 1-60 (60)
471 KOG4814 Uncharacterized conser 94.5 5.4 0.00012 43.0 19.4 94 262-355 357-456 (872)
472 PF04053 Coatomer_WDAD: Coatom 94.4 1.6 3.5E-05 46.5 16.2 55 403-475 347-401 (443)
473 KOG1538 Uncharacterized conser 94.4 1.6 3.6E-05 46.8 15.5 243 268-554 565-831 (1081)
474 KOG1839 Uncharacterized protei 94.3 0.52 1.1E-05 54.9 12.8 175 371-556 935-1128(1236)
475 TIGR02561 HrpB1_HrpK type III 94.3 0.73 1.6E-05 40.0 10.6 84 449-544 12-95 (153)
476 KOG2396 HAT (Half-A-TPR) repea 94.3 0.56 1.2E-05 48.8 11.6 85 278-363 90-175 (568)
477 KOG1310 WD40 repeat protein [G 94.1 0.2 4.4E-06 52.1 8.1 91 458-560 385-478 (758)
478 KOG3364 Membrane protein invol 94.1 0.44 9.6E-06 40.4 8.6 69 497-565 36-109 (149)
479 COG5159 RPN6 26S proteasome re 94.1 6.2 0.00013 38.2 17.9 209 297-522 7-235 (421)
480 PF13374 TPR_10: Tetratricopep 94.0 0.13 2.7E-06 34.1 4.7 30 527-556 2-31 (42)
481 cd03419 GRX_GRXh_1_2_like Glut 94.0 0.18 3.8E-06 39.6 6.2 56 633-693 2-64 (82)
482 KOG0529 Protein geranylgeranyl 94.0 3.4 7.5E-05 42.2 16.3 173 374-565 34-233 (421)
483 KOG3364 Membrane protein invol 94.0 0.46 9.9E-06 40.3 8.6 76 258-333 31-111 (149)
484 cd03074 PDI_b'_Calsequestrin_C 93.9 0.83 1.8E-05 36.7 9.3 83 629-711 20-119 (120)
485 KOG2501 Thioredoxin, nucleored 93.9 0.19 4.1E-06 44.0 6.4 65 630-694 33-130 (157)
486 COG3914 Spy Predicted O-linked 93.8 1.2 2.6E-05 47.5 13.2 101 453-565 73-180 (620)
487 PF13374 TPR_10: Tetratricopep 93.8 0.15 3.3E-06 33.7 4.7 30 447-476 2-31 (42)
488 KOG1538 Uncharacterized conser 93.7 3 6.6E-05 44.8 15.8 57 261-318 587-657 (1081)
489 COG3914 Spy Predicted O-linked 93.6 3.2 7E-05 44.4 15.8 128 274-402 46-176 (620)
490 cd03020 DsbA_DsbC_DsbG DsbA fa 93.5 0.14 3E-06 48.3 5.7 41 664-708 156-197 (197)
491 COG1747 Uncharacterized N-term 93.5 11 0.00025 39.6 22.8 220 257-526 64-292 (711)
492 COG3629 DnrI DNA-binding trans 93.5 0.65 1.4E-05 45.6 10.1 91 493-583 153-244 (280)
493 KOG2581 26S proteasome regulat 93.4 10 0.00022 38.7 19.0 72 404-481 210-281 (493)
494 PF15015 NYD-SP12_N: Spermatog 93.4 0.5 1.1E-05 47.9 9.2 90 265-354 182-289 (569)
495 PRK13184 pknD serine/threonine 93.3 21 0.00045 41.9 23.2 100 262-363 478-587 (932)
496 KOG3807 Predicted membrane pro 93.2 9.6 0.00021 37.7 20.1 58 263-322 188-245 (556)
497 cd02991 UAS_ETEA UAS family, E 93.2 1.1 2.4E-05 37.8 9.9 82 628-711 16-112 (116)
498 cd03029 GRX_hybridPRX5 Glutare 93.1 0.65 1.4E-05 35.3 7.8 64 633-708 3-71 (72)
499 KOG2422 Uncharacterized conser 92.9 8.5 0.00018 41.2 17.5 159 273-435 252-451 (665)
500 PF04053 Coatomer_WDAD: Coatom 92.8 6.2 0.00013 42.2 17.2 47 304-355 329-375 (443)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-43 Score=354.11 Aligned_cols=360 Identities=19% Similarity=0.203 Sum_probs=338.3
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALA 280 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~ 280 (713)
+++|+..|+.+++++|+ +.++|. -+|.++...+ +.|.+++.. ++|....+...+|..+...|+..+|..
T Consensus 132 ~~~al~~y~~aiel~p~--fida~i----nla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPK--FIDAYI----NLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HHHHHHHHHHHHhcCch--hhHHHh----hHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 34999999999999964 556554 2777777777 667777766 899999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 281 LYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 281 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
+|.+|++.+|..+.+|.+||.++...|+...|+..|++|++++|+..++|++||.+|...+.+++|+.+|.+|+. +.|+
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~-lrpn 284 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN-LRPN 284 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh-cCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 361 DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
+. ..+.+++.+|.+.|..+-||..|++++.+.|... .+|.++|.++...|+..+|+.+|.+++.+.|.
T Consensus 285 ~A------~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~-~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~----- 352 (966)
T KOG4626|consen 285 HA------VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP-DAYNNLANALKDKGSVTEAVDCYNKALRLCPN----- 352 (966)
T ss_pred ch------hhccceEEEEeccccHHHHHHHHHHHHhcCCCch-HHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-----
Confidence 84 7788889999999999999999999999999995 99999999999999999999999999999996
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL 520 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 520 (713)
.+++++++|.+|..+|.+++|..+|.++++..|....+.. ++|.+|.++|++++|+.+|++++
T Consensus 353 -----hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n------------NLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 353 -----HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN------------NLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred -----cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh------------hHHHHHHhcccHHHHHHHHHHHH
Confidence 4668999999999999999999999999999999999988 89999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 521 EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 521 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
.+.|..++++.|+|.+|..+|+.+.|+.+|.+|+.++|.+++++. .+|++.|+++|+++|+.+++..+
T Consensus 416 rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cN 495 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCN 495 (966)
T ss_pred hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhH
Confidence 999999999999999999999999999999999999999998876 89999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 005125 589 LFEAQVQLKKQRG 601 (713)
Q Consensus 589 l~~~~~~l~~~~~ 601 (713)
+.-+.+-+..|..
T Consensus 496 llh~lq~vcdw~D 508 (966)
T KOG4626|consen 496 LLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHhcccc
Confidence 9888888877755
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-39 Score=322.79 Aligned_cols=351 Identities=20% Similarity=0.186 Sum_probs=308.9
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
++.+..-..+++.+|. ..+ ...-+|+++...| +.|...+.. +.|+..++|..+|.++...|+.+.|..+
T Consensus 99 d~s~a~~~~a~r~~~q--~ae----~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~ 172 (966)
T KOG4626|consen 99 DKSSAGSLLAIRKNPQ--GAE----AYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQC 172 (966)
T ss_pred hhhhhhhhhhhhccch--HHH----HHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHH
Confidence 3555566667777763 222 3334788888888 567777776 7888889999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 282 YDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 282 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|.++++++|+...+...+|.++..+|+..+|..+|.+|++.+|..+.+|.+||.++..+|+...|+.+|++|+. ++|..
T Consensus 173 ~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk-ldP~f 251 (966)
T KOG4626|consen 173 FFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK-LDPNF 251 (966)
T ss_pred HHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc-CCCcc
Confidence 99999999988888888899888899999999999999999998888999999999999999999999999999 99987
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhh
Q 005125 362 IAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLF 441 (713)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 441 (713)
+.++++++.++.+++.+++|+..|.+++.+.|.+. .++.++|.+|..+|..+-|+.+|++++++.|..
T Consensus 252 ------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A-~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F----- 319 (966)
T KOG4626|consen 252 ------LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA-VAHGNLACIYYEQGLLDLAIDTYKRALELQPNF----- 319 (966)
T ss_pred ------hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-hhccceEEEEeccccHHHHHHHHHHHHhcCCCc-----
Confidence 47888889999999999999999999999998885 788888999999999999999999999988864
Q ss_pred cccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 442 GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 442 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
++++.++|.++...|+..+|..+|.+|+.+.|+++++.+ ++|+++..+|.+++|...|.++++
T Consensus 320 -----~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~------------NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 320 -----PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN------------NLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred -----hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH------------HHHHHHHHhccchHHHHHHHHHHh
Confidence 458889999999999999999999999999999998887 899999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 522 HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRAL 589 (713)
Q Consensus 522 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l 589 (713)
..|+.+.++.|||.+|.++|++++|+.+|+.|+++.|..++++. ..|+++|.+|+.++|...++..+|
T Consensus 383 v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL 462 (966)
T KOG4626|consen 383 VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL 462 (966)
T ss_pred hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence 99999999999999999999999999999999999999999987 899999999999999999998888
Q ss_pred HHHH
Q 005125 590 FEAQ 593 (713)
Q Consensus 590 ~~~~ 593 (713)
..+.
T Consensus 463 asi~ 466 (966)
T KOG4626|consen 463 ASIY 466 (966)
T ss_pred HHHh
Confidence 6654
No 3
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=262.88 Aligned_cols=390 Identities=14% Similarity=0.091 Sum_probs=324.7
Q ss_pred CCCCcccccccCCccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhccCCCchhhhhccccCCCCCCccccc
Q 005125 56 KPPAENSKKRRSSSAENVLIGTANVAKPSPKPNQTLPRRTSSEPPRLSTSQQKRHNRRSSDAARSSTSSSTSSGLTNASK 135 (713)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (713)
-+|||||.+++.+.. .+.++..+| .++.++|.++.+||++++ .+++++..+.++++++.+.++.++.++
T Consensus 77 ~aRPGtS~k~p~t~~------~g~sq~~rp---~t~aGrpv~g~~rp~~~S--~rpGsm~qA~rt~rta~tar~~~S~sg 145 (478)
T KOG1129|consen 77 AARPGTSIKTPFTPR------PGTSQRARP---ATSAGRPVAGSSRPRLNS--SRPGSMAQARRTTRTARTARSLGSRSG 145 (478)
T ss_pred CCCCCCcccCCCCCC------CCCchhhcc---hhhcCCCCccccCccccC--CCCccHHhhccCccccccccccccccc
Confidence 366999999988776 235566677 788999999999999877 678899999999999999888877777
Q ss_pred chhhhcccCCccccccccccccccccccccccccccceeccCCCccCCCCcccccccCCcccccCCCCCchhHHHHHHHh
Q 005125 136 IQDDKRKLSKYPTCNSLELSTVVITSDYQQTNDGKRLVRATSSNITPSGQLGNLKQLGTGNILGNHCPNATVKTVDYLYK 215 (713)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~g~~~~~~~~~~~~~Ai~~~~k 215 (713)
+. .+....+|.+ ...+.++..+..|+..+..-..+......++.+. ..|.++|-.....
T Consensus 146 r~------------~RlgtaSmaa-------~~dG~f~nlsRLN~tkYa~~p~l~kaLFey~fyh--enDv~~aH~~~~~ 204 (478)
T KOG1129|consen 146 RA------------SRLGTASMAA-------FNDGKFYNLSRLNPTKYAERPTLVKALFEYLFYH--ENDVQKAHSLCQA 204 (478)
T ss_pred hh------------hhhhhhhhhc-------cCCcceeehhhcCchhhccChHHHHHHHHHHHHh--hhhHHHHHHHHHH
Confidence 66 5556666666 3355788888888888777665554444444432 1223344444443
Q ss_pred hhhcC---C--CccccccccccccchhhhhcCCC--CchhhhHhh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005125 216 NLQDV---P--KQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS--LNKLDPEELKFMGNEAYNKARFEDALALYDRAI 286 (713)
Q Consensus 216 al~~~---P--~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 286 (713)
.++++ | +......|| |+..+|.||.++| .+|...++. .....++.+..++.+|.+..+.+.|+..|.+.+
T Consensus 205 ~~~~~~a~~s~~~~~~~dww-Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gl 283 (478)
T KOG1129|consen 205 VLEVERAKPSGSTGCTLDWW-WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGL 283 (478)
T ss_pred HHHHHhccccccccchHhHH-HHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhh
Confidence 33332 2 344556688 9999999999999 777777777 677889999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHH
Q 005125 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE 366 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~ 366 (713)
+..|.+...+..+|.++..++++++|+++|+.+++.+|.+.++...+|.-|+..++++-|+.+|++.++ +.-.+
T Consensus 284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~~s----- 357 (478)
T KOG1129|consen 284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGAQS----- 357 (478)
T ss_pred hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 55444
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCc
Q 005125 367 ALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGG 446 (713)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 446 (713)
++++.++|.|++..++++-++..|++|+....+. ...
T Consensus 358 ------------------------------------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~-------~~a 394 (478)
T KOG1129|consen 358 ------------------------------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP-------GQA 394 (478)
T ss_pred ------------------------------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc-------chh
Confidence 5899999999999999999999999998765432 246
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
+++|+++|.+....||+.-|..+|+-++..++++.++++ |+|.+..+.|+.++|..++..|-...|+-
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn------------NLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN------------NLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH------------hHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 889999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 005125 527 SVLLCNRAACRSK 539 (713)
Q Consensus 527 ~~~~~~la~~~~~ 539 (713)
.+..+|++.+-..
T Consensus 463 ~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 463 AEVTTNLQFMSVH 475 (478)
T ss_pred cccccceeEEeee
Confidence 9888888755433
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.2e-29 Score=283.92 Aligned_cols=200 Identities=15% Similarity=0.100 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHH
Q 005125 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYL 449 (713)
Q Consensus 370 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 449 (713)
.+..++..+..+|++++|+..+++++.++|... ..|..+|.++...|++++|+.+|++++..+|+ ++.+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----------~~~~ 401 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVT-QSYIKRASMNLELGDPDKAEEDFDKALKLNSE----------DPDI 401 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHH
Confidence 345555556666666666666666666666553 55666666666666666666666666666553 3446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH
Q 005125 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL 529 (713)
Q Consensus 450 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 529 (713)
++.+|.++...|++++|+.+|++++.++|++...+. ++|.++..+|++++|+..|++++...|+++.+
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~------------~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~ 469 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI------------QLGVTQYKEGSIASSMATFRRCKKNFPEAPDV 469 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence 666666666666666666666666666666665554 46666666677777777777666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-------------------HHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 530 LCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA-------------------RLEAAIQDYEMLIREIPGNEEVGRALF 590 (713)
Q Consensus 530 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-------------------~~~~A~~~~~~al~~~p~~~~~~~~l~ 590 (713)
+..+|.++..+|++++|+..|+++++++|+.... .+++|+..|++++.++|++..+...+.
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la 549 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 6666777766777777777777766666653211 015566666666666666665554444
Q ss_pred HH
Q 005125 591 EA 592 (713)
Q Consensus 591 ~~ 592 (713)
.+
T Consensus 550 ~~ 551 (615)
T TIGR00990 550 QL 551 (615)
T ss_pred HH
Confidence 33
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=4.6e-29 Score=279.34 Aligned_cols=341 Identities=13% Similarity=0.116 Sum_probs=272.5
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
++|+.+|++++.+.|++. ....+|.++..++ ++|+..+.+ ++|+++.+|+.+|.+|...|++++|+..
T Consensus 144 ~~Ai~~y~~al~~~p~~~-------~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 144 NKAIKLYSKAIECKPDPV-------YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred HHHHHHHHHHHhcCCchH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 499999999999998532 2234788888888 568888777 8899999999999999999998888754
Q ss_pred HHHH----------------------------------------------------------------------------
Q 005125 282 YDRA---------------------------------------------------------------------------- 285 (713)
Q Consensus 282 ~~~a---------------------------------------------------------------------------- 285 (713)
|..+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 4332
Q ss_pred ------------------------HHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 286 ------------------------IAI---NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 286 ------------------------l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
++. .|....++..+|.++..+|++++|+..|+++++++|++..+|..+|.++.
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~ 376 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL 376 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 211 24455677788888888899999999999999989988888889999998
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
.+|++++|+.+|++++. .+|++. ..++.++..+...|++++|+..|++++.++|++. ..+..+|.++..+|+
T Consensus 377 ~~g~~~eA~~~~~~al~-~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~-~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALK-LNSEDP------DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI-FSHIQLGVTQYKEGS 448 (615)
T ss_pred HCCCHHHHHHHHHHHHH-hCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH-HHHHHHHHHHHHCCC
Confidence 99999999999999888 888874 5667788888888999999999999999988875 678888999999999
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
+++|+..|++++...|+ .+.++..+|.++...|++++|+..|++++.++|.+...+... ..+..
T Consensus 449 ~~eA~~~~~~al~~~P~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~------~~l~~ 512 (615)
T TIGR00990 449 IASSMATFRRCKKNFPE----------APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV------LPLIN 512 (615)
T ss_pred HHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH------HHHHH
Confidence 99999999998887774 456788889999999999999999999999988754433210 01112
Q ss_pred HHHHH-HHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHH
Q 005125 499 RGNLL-FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----EAAIQDYE 573 (713)
Q Consensus 499 lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----~~A~~~~~ 573 (713)
.+.++ ...|++++|+.+|++++.++|++..++..+|.++..+|++++|+.+|++++++.+.....+. .+|.....
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~ 592 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQI 592 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 33334 34799999999999999999999999999999999999999999999999999887554322 45554444
Q ss_pred HHHHh
Q 005125 574 MLIRE 578 (713)
Q Consensus 574 ~al~~ 578 (713)
++.+.
T Consensus 593 ~~~~~ 597 (615)
T TIGR00990 593 QVQED 597 (615)
T ss_pred HHHHH
Confidence 44444
No 6
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=1.1e-28 Score=274.98 Aligned_cols=341 Identities=12% Similarity=0.099 Sum_probs=304.4
Q ss_pred HHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 005125 208 KTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALY 282 (713)
Q Consensus 208 ~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 282 (713)
+|...++.++...|.+. . .+..+|.+....| ++|...+++ .+|.+++++..+|..+...|++++|+..|
T Consensus 60 ~A~~l~~~~l~~~p~~~--~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 60 VGLTLLSDRVLTAKNGR--D----LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred hhHHHhHHHHHhCCCch--h----HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999997532 3 3445666666666 668888888 89999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 283 DRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 283 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+++++++|++..++..++.++...|++++|+..+++++...|++..++..++ .+...|++++|+..+++++. .+|...
T Consensus 134 ~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~-~~~~~~ 211 (656)
T PRK15174 134 EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLP-FFALER 211 (656)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHh-cCCCcc
Confidence 9999999999999999999999999999999999999999999998887765 48899999999999999988 765332
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHH----HHHHhhccccCChhhHH
Q 005125 363 AKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQE----AHDSYNKSPKFCLEYYT 438 (713)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~ 438 (713)
. ......+..+...|++++|+..+++++...|++. .++..+|.+|...|++++ |+..|++++.+.|+
T Consensus 212 ~-----~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~-~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~--- 282 (656)
T PRK15174 212 Q-----ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA-ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD--- 282 (656)
T ss_pred h-----hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---
Confidence 1 1223456677889999999999999999999985 888999999999999996 89999999999995
Q ss_pred hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 439 KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 439 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
++.++..+|.++...|++++|+..+++++.++|+++.++. .+|.++...|++++|+..|++
T Consensus 283 -------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~------------~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 283 -------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA------------MYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred -------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHH
Confidence 4568899999999999999999999999999999998887 699999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCCCHH
Q 005125 519 GLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 519 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~~~~ 584 (713)
+++.+|+++..+..+|.++...|++++|+..|+++++.+|++....+++|+..|.+++...+....
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~ 409 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPE 409 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccc
Confidence 999999998888888999999999999999999999999999988889999999999987755543
No 7
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=4.7e-30 Score=262.48 Aligned_cols=273 Identities=15% Similarity=0.155 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
+++..+|..|+.+++|++|..+|+.+-++.|......-....+++.+.+--+--...+..+..+|+.++.|..+|+||..
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 45899999999999999999999999999999888888888999999888877778888999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 419 (713)
+++++.|+++|++|++ ++|... .++...+..+.....++.|..+|+++|..+|.+. .+|+.+|.+|.+++++
T Consensus 434 Qkdh~~Aik~f~RAiQ-ldp~fa------YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY-nAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQ-LDPRFA------YAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY-NAWYGLGTVYLKQEKL 505 (638)
T ss_pred hhHHHHHHHHHHHhhc-cCCccc------hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh-HHHHhhhhheeccchh
Confidence 9999999999999999 999884 7788889999999999999999999999999997 8999999999999999
Q ss_pred HHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 005125 420 QEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLR 499 (713)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~l 499 (713)
+.|+-+|++|+.++|. +..++..+|.++.+.|+.++|+.+|++|+.++|.++...+ ..
T Consensus 506 e~Ae~~fqkA~~INP~----------nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~------------~~ 563 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPS----------NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY------------HR 563 (638)
T ss_pred hHHHHHHHhhhcCCcc----------chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH------------HH
Confidence 9999999999999994 5668899999999999999999999999999999998887 69
Q ss_pred HHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 500 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
|.+++..+++++|+..+++..++.|++..+++.+|.+|.++|+.+.|+..|.-|.+++|.-..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999999999999999999999999999999999999999999999999999999998665
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=1.9e-28 Score=273.07 Aligned_cols=310 Identities=14% Similarity=0.065 Sum_probs=282.1
Q ss_pred CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 245 GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 245 ~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
++|..+++. ..|.++++++.+|......|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.
T Consensus 59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 557777666 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
++|++..++..+|.++...|++++|+..+++++. ..|++.... ... ..+...|++++|+..+++++...|..
T Consensus 139 l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~-~~P~~~~a~------~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~ 210 (656)
T PRK15174 139 AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ-EVPPRGDMI------ATC-LSFLNKSRLPEDHDLARALLPFFALE 210 (656)
T ss_pred hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCCCCHHHH------HHH-HHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999998 888875322 122 23677899999999999999988755
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhC
Q 005125 402 APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFED----AVKTAQDAAQID 477 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~ 477 (713)
....+..++.++...|++++|+..|++++...|+ .+.+++.+|.+|...|++++ |+..|+++++++
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~----------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARGLD----------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 4455667789999999999999999999999885 46688999999999999986 899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 478 p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
|++..++. .+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+..|++++..+
T Consensus 281 P~~~~a~~------------~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 281 SDNVRIVT------------LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred CCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99998887 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHH------------HHHHHHHHHHHHhCCCCHH
Q 005125 558 PSYSKARL------------EAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 558 p~~~~a~~------------~~A~~~~~~al~~~p~~~~ 584 (713)
|++...+. ++|+..|+++++.+|++..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 99865432 9999999999999998654
No 9
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.97 E-value=5.3e-28 Score=226.97 Aligned_cols=339 Identities=15% Similarity=0.214 Sum_probs=302.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+|.+++-++.+|..++..|++..|+..|..|++.+|++..+++.+|.+|+.+|+-..|+..+.++|++.|+...+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHH---------HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA---------EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQ 404 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 404 (713)
|.++.++|++++|...|++++. .+|.+.... .....+......+...|++..++......|++.|-+. .
T Consensus 113 g~vllK~Gele~A~~DF~~vl~-~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda-~ 190 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQ-HEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA-S 190 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHh-cCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh-H
Confidence 9999999999999999999999 888654221 1222333444556667899999999999999999885 7
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 484 (713)
++...+.||...|+...|+..++.+-++..+ +.+.++.++.+++..|+.+.++...+++|+++|++..++
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D----------nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD----------NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc----------chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 8889999999999999999999999888775 556889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL----LCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
..+..++++.....-+......++|.++++.+++.++.+|..+.+ +..+..|+..-|++.+|+..+.++|+++|++
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d 340 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD 340 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH
Confidence 999999988888888888999999999999999999999985543 4457889999999999999999999999999
Q ss_pred hHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCccc
Q 005125 561 SKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDV 604 (713)
Q Consensus 561 ~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~ 604 (713)
..++. +.||..|++|++++++|..+...+.+++...+.....++
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDY 396 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchH
Confidence 87766 899999999999999999999999988876665444333
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=4.3e-27 Score=280.16 Aligned_cols=301 Identities=13% Similarity=0.097 Sum_probs=223.1
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
++|+..|+++++.+|...... ...+..+....+ ++|+..+++ .+|.++.+++.+|.+++..|++++|+..
T Consensus 129 ~eA~~~~~~~l~~~p~~~~la-----~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 129 EEALASYDKLFNGAPPELDLA-----VEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred HHHHHHHHHHccCCCCChHHH-----HHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 499999999999987432110 011222222223 668888887 7899999999999999999999999999
Q ss_pred HHHHHHhCC----------------------------------CCHH--------------------HHHHHHHHHHHcC
Q 005125 282 YDRAIAINS----------------------------------SKAT--------------------YRSNKSAALIGLG 307 (713)
Q Consensus 282 ~~~al~~~p----------------------------------~~~~--------------------~~~~la~~~~~~g 307 (713)
+++++...+ +... ....+|.++...|
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g 283 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG 283 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC
Confidence 999865322 1110 0013478889999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHH--HH------HHHHHHHHHHHHH
Q 005125 308 RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK--AE------ALHKHLTKCNEAR 379 (713)
Q Consensus 308 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~--~~------~~~~~~~~~~~~~ 379 (713)
++++|+..|+++++++|+++.++..+|.+|..+|++++|+.+|+++++ .+|++... +. .....+..+..+.
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~-~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA-LDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 99876421 11 1223345678888
Q ss_pred HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc---------------
Q 005125 380 ELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA--------------- 444 (713)
Q Consensus 380 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--------------- 444 (713)
..|++++|+..|++++..+|++. .++..+|.++...|++++|+.+|+++++..|++...+....
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~-~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDS-YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999885 78889999999999999999999999999887544321110
Q ss_pred -----------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 005125 445 -----------------GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKAS 507 (713)
Q Consensus 445 -----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 507 (713)
.....+..+|.++...|++++|+..|+++++++|+++.++. .+|.++...|
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~------------~LA~~~~~~G 509 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY------------RLAQDLRQAG 509 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcC
Confidence 00123344666677777777777777777777777776655 3455555555
Q ss_pred cHHHHHHHHHHHhccCCCC
Q 005125 508 KYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 508 ~~~~A~~~~~~al~~~p~~ 526 (713)
++++|+..|+++++.+|++
T Consensus 510 ~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPND 528 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCC
Confidence 5555555555554444443
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=4.8e-27 Score=279.75 Aligned_cols=326 Identities=13% Similarity=0.098 Sum_probs=270.7
Q ss_pred chhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH--------------H
Q 005125 235 VMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKAT--------------Y 295 (713)
Q Consensus 235 ~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 295 (713)
.+|.++...+ ++|+..+++ .+|.+++++..+|.+++..|++++|+.+|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3577777777 668888877 78999999999999999999999999999999999997642 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHH------
Q 005125 296 RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH------ 369 (713)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~------ 369 (713)
...+|.++...|++++|+..|++++.++|++..++..+|.+|...|++++|+.+|+++++ ++|.+......+.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~-~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR-MDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Confidence 235588899999999999999999999999999999999999999999999999999999 9998764332221
Q ss_pred ------------------------------HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH
Q 005125 370 ------------------------------KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419 (713)
Q Consensus 370 ------------------------------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 419 (713)
.+...+..+...|++++|+..|+++++.+|++. .+++.+|.+|...|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~-~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV-WLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCH
Confidence 122345667788999999999999999999985 7889999999999999
Q ss_pred HHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------
Q 005125 420 QEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA------------------------- 474 (713)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------- 474 (713)
++|+..|++++...|++.. .++.++..+...+++++|+.+++++.
T Consensus 512 ~~A~~~l~~al~~~P~~~~----------~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPE----------QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHH----------HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 9999999999998886433 34444444444444444444444321
Q ss_pred ---------------HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005125 475 ---------------QIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK 539 (713)
Q Consensus 475 ---------------~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 539 (713)
+..|.++..+. .+|.++...|++++|+..|+++++.+|+++.++.+++.+|..
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~------------~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDL------------TLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 13555555444 699999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHH
Q 005125 540 LGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 540 ~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~ 584 (713)
.|++++|++.++++++..|++..++. ++|++.|++++...|+++.
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 99999999999999999999877654 8899999999998876643
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=8.1e-27 Score=276.66 Aligned_cols=360 Identities=17% Similarity=0.156 Sum_probs=227.9
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALA 280 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~ 280 (713)
.++|+.+|+++++.+|... . ....++.++...+ ++|...++. ..|.+..++..++..+...|++++|+.
T Consensus 481 ~~~A~~~~~~a~~~~~~~~--~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 481 LAKAREAFEKALSIEPDFF--P----AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HHHHHHHHHHHHhhCCCcH--H----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3488888888888886421 2 2233667777666 557777766 567778888888888888888888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 281 LYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 281 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
+|++++..+|.+...+..++.++...|++++|+..+++++...|.+..+|..+|.+|...|++++|+.+|++++. ..|.
T Consensus 555 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~ 633 (899)
T TIGR02917 555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA-LQPD 633 (899)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC
Confidence 888888888877777777888888888888888888888777777777788888888888888888888888777 7776
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 361 DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
+. ..+...+..+...|++++|+..+++++...|++. ..+..++.++...|++++|+..++.+....|.
T Consensus 634 ~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----- 701 (899)
T TIGR02917 634 SA------LALLLLADAYAVMKNYAKAITSLKRALELKPDNT-EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK----- 701 (899)
T ss_pred Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-----
Confidence 64 3455666777777777777777777777777764 55666666666666666666666666555442
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------------------HHHHHHH
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK----------------------AMASARL 498 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~----------------------~~~~~~~ 498 (713)
.+..+..+|.++...|++++|+..|++++...|++. .+..+.... ....+..
T Consensus 702 -----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 775 (899)
T TIGR02917 702 -----AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ-NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA 775 (899)
T ss_pred -----ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 233455555555566666666666666555555542 121000000 0001114
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------H
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------E 566 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~ 566 (713)
+|.++...|++++|+..|+++++..|+++.++.++|.++...|+ .+|+..+++++++.|+++..+. +
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 55555555555555555555555555555555555555555555 4555555555555555544432 5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 567 AAIQDYEMLIREIPGNEEVGRALFE 591 (713)
Q Consensus 567 ~A~~~~~~al~~~p~~~~~~~~l~~ 591 (713)
+|+..|+++++.+|.++.+...+..
T Consensus 855 ~A~~~~~~a~~~~~~~~~~~~~l~~ 879 (899)
T TIGR02917 855 RALPLLRKAVNIAPEAAAIRYHLAL 879 (899)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHH
Confidence 5555555555555555555444433
No 13
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.2e-27 Score=231.07 Aligned_cols=317 Identities=20% Similarity=0.228 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
+..+...|+-+++.|+|++||.+|.+||++.|+.+..|.+++.||...|+|++.++.+.++++++|++..++++.+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHH------------------HHHhh---------hhc-------ccc-----------------------
Q 005125 339 RLGEAEKAVSHY------------------KKSSS---------LAN-------QKD----------------------- 361 (713)
Q Consensus 339 ~~g~~~~A~~~~------------------~~al~---------~~~-------p~~----------------------- 361 (713)
.+|++.+|+... ++.+. .+. |..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 999999998643 11111 000 000
Q ss_pred ---HHHHHH------------------------------------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005125 362 ---IAKAEA------------------------------------------LHKHLTKCNEARELKRWNDLLKETQNVIS 396 (713)
Q Consensus 362 ---~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 396 (713)
...... ..+++..+.-+.-.|+...|...++.+|.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 000000 11222223333445788888889999999
Q ss_pred cCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 397 FGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476 (713)
Q Consensus 397 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 476 (713)
++|... ..|..+|.+|....+.++-...|.+|..++|+ ++++|+.+|.+++-++++++|+..|++++.+
T Consensus 355 l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~----------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 355 LDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE----------NPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred cCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC----------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999886 66999999999999999999999999999995 5679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 477 DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 477 ~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+|.+..++. +++.+++++++++++...|+.++..-|+.+++|...|.++..+++++.|++.|.+|+++
T Consensus 424 ~pe~~~~~i------------Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 424 DPENAYAYI------------QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred ChhhhHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999988887 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC------ChHHHH-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005125 557 MPS------YSKARL-------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKK 598 (713)
Q Consensus 557 ~p~------~~~a~~-------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 598 (713)
.|. ++..+. ..|+..+++|+++||....+...|.....+..+
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 998 333222 899999999999999999999988876665443
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=2.4e-26 Score=272.69 Aligned_cols=348 Identities=18% Similarity=0.197 Sum_probs=290.7
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALA 280 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~ 280 (713)
.++|+..+++.+...|.. .. ....+|.++...+ ++|...+.+ ..|.++.+++.+|..+...|++++|+.
T Consensus 447 ~~~A~~~~~~~~~~~~~~--~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 447 FDKALAAAKKLEKKQPDN--AS----LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HHHHHHHHHHHHHhCCCC--cH----HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 459999999999888742 22 3345788888888 668888887 789999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 281 LYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 281 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
.|+++++.+|.+..++..++.++...|++++|+..+++++..+|.+...+..++.+|...|++++|+..+++++. ..|.
T Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~ 599 (899)
T TIGR02917 521 RFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD-AAPD 599 (899)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 361 DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
+. ..+..++..+...|++++|+..|++++...|.+. ..+..+|.++...|++++|+.+|++++...|+
T Consensus 600 ~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----- 667 (899)
T TIGR02917 600 SP------EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA-LALLLLADAYAVMKNYAKAITSLKRALELKPD----- 667 (899)
T ss_pred CH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----
Confidence 74 5677888999999999999999999999999885 78889999999999999999999999998885
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL 520 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 520 (713)
+...+..++.++...|++++|+..++.+....|.+...+. .+|.++...|++++|+..|++++
T Consensus 668 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 668 -----NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE------------LEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH------------HHHHHHHHCCCHHHHHHHHHHHH
Confidence 4557888999999999999999999999999999888776 36666666666666666666666
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 521 EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 521 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
...|++ ..+..++.++...|++++|+..++++++.+|++..++. ++|+..|+++++..|+++.+...
T Consensus 731 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 731 KRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred hhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 666654 55556666666666666666666666666666655444 56666666666666666555544
Q ss_pred HH
Q 005125 589 LF 590 (713)
Q Consensus 589 l~ 590 (713)
+.
T Consensus 810 l~ 811 (899)
T TIGR02917 810 LA 811 (899)
T ss_pred HH
Confidence 43
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=2.1e-25 Score=254.15 Aligned_cols=369 Identities=11% Similarity=0.029 Sum_probs=293.2
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
++|+..|.++...+|.+. . ....++.++...+ ++|..++++ ..|.+++++..+|.++...|++++|+..
T Consensus 32 ~~A~~~~~~~~~~~~~~a--~----~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPA--R----GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHHHHHHHHHHhhCCCCH--H----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 399999999998776422 2 2344788888888 668888888 8899999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----
Q 005125 282 YDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL----- 356 (713)
Q Consensus 282 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 356 (713)
++++++.+|+++. +..+|.++...|++++|+..++++++++|++..++..+|.++...+..++|+..++++...
T Consensus 106 l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~ 184 (765)
T PRK10049 106 AKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKR 184 (765)
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence 9999999999999 9999999999999999999999999999999999999999999999988888777644320
Q ss_pred ----------------------------------------hccccHHH-HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005125 357 ----------------------------------------ANQKDIAK-AEALHKHLTKCNEARELKRWNDLLKETQNVI 395 (713)
Q Consensus 357 ----------------------------------------~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 395 (713)
..|.++.. .......+.....+...+++++|+..|++++
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00000000 0001111111223457789999999999999
Q ss_pred HcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 396 SFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 396 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
+..+..+..+...+|.+|...|++++|+.+|++++...|.... ........++.++...|++++|+..++++..
T Consensus 265 ~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~------~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 265 AEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIAD------LSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC------CChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 9875443344555699999999999999999999887764311 1234566778889999999999999999999
Q ss_pred hCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 476 IDPNNKEVIKGVKM---AKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 476 ~~p~~~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
..|.....+..... -.....+..+|.++...|++++|++.+++++...|+++.++..+|.++...|++++|+..+++
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 88743211100000 000112236899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 553 ALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 553 al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
++.++|++...++ ++|+..++++++..|+++.+...
T Consensus 419 al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 419 AEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999977666 89999999999999999976554
No 16
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-24 Score=217.57 Aligned_cols=329 Identities=24% Similarity=0.329 Sum_probs=257.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
-+...|+..+..|+|+.|+.+|..+|.++|.+...+.++..+|..+|+|++|++.-.+.++++|+.+..|.++|..+..+
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhccccHHHHHHHHHH-------------------------------------------------
Q 005125 341 GEAEKAVSHYKKSSSLANQKDIAKAEALHKH------------------------------------------------- 371 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~------------------------------------------------- 371 (713)
|+|++|+..|.+.++ .+|++......+...
T Consensus 84 g~~~eA~~ay~~GL~-~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLE-KDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred ccHHHHHHHHHHHhh-cCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 999999999999999 998876432211110
Q ss_pred -----------------------------------------------------------------HHHHHHHHHhhcHHH
Q 005125 372 -----------------------------------------------------------------LTKCNEARELKRWND 386 (713)
Q Consensus 372 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 386 (713)
-.++.......++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 011222233345555
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHH
Q 005125 387 LLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466 (713)
Q Consensus 387 A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 466 (713)
|++.|..++.++ .+. ..+.+.+.+|+..|.+.+.+.....+++...+....+. ..+..+..+|..|.++++++.|
T Consensus 243 a~q~y~~a~el~-~~i-t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k---lIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDI-TYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK---LIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHhHh-hhh-HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH---HHHHHHHHhhhhhhhHHhHHHH
Confidence 666666666666 332 45555666666666666666666655543322111100 1234455578899999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH---------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHH
Q 005125 467 VKTAQDAAQIDPNNKEVIKGVKMA---------------KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLC 531 (713)
Q Consensus 467 ~~~~~~al~~~p~~~~~~~~~~~~---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 531 (713)
+.+|++++..... ++....+... ......+..|+.++..|+|..|+..|.+||..+|+++.+|.
T Consensus 318 i~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs 396 (539)
T KOG0548|consen 318 IKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS 396 (539)
T ss_pred HHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH
Confidence 9999999986544 2222221111 12445567899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005125 532 NRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQL 596 (713)
Q Consensus 532 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 596 (713)
|+|.||.++|.+..|+.+++.+++++|++..+|+ ++|++.|+++++++|++.++...+.++..++
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988 8999999999999999999999999888765
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=4.4e-23 Score=235.14 Aligned_cols=332 Identities=14% Similarity=0.092 Sum_probs=265.3
Q ss_pred CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 245 GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 245 ~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
++|+..+.. ..|..+.++..+|..+...|++++|+.+|+++++.+|.++.++..++.++...|++++|+..++++++
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~ 111 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVS 111 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567777777 47788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH------H--------------------
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTK------C-------------------- 375 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~------~-------------------- 375 (713)
.+|++.. +..+|.++...|++++|+..|+++++ +.|++......+...+.. +
T Consensus 112 ~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~-~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~ 189 (765)
T PRK10049 112 GAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP-RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEAD 189 (765)
T ss_pred hCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999 99999999999999999999999999 999987543322211110 0
Q ss_pred ------HHH-----HHhhcH---HHHHHHHHHHHHcC---CCChH---HHHHHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 376 ------NEA-----RELKRW---NDLLKETQNVISFG---ADSAP---QVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 376 ------~~~-----~~~~~~---~~A~~~~~~al~~~---p~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
... ...+++ ++|+..++.+++.. |+..+ .+......++...|++++|+..|+++++..+.
T Consensus 190 ~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~ 269 (765)
T PRK10049 190 AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI 269 (765)
T ss_pred HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Confidence 000 011223 67788888888653 33322 12222123446779999999999999887532
Q ss_pred hHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Q 005125 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK----EVIKGVKMAKAMASARLRGNLLFKASKYKE 511 (713)
Q Consensus 436 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 511 (713)
. ...+...+|.+|...|++++|+.+|++++..+|.+. .... .++.++...|++++
T Consensus 270 ~---------P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~------------~L~~a~~~~g~~~e 328 (765)
T PRK10049 270 I---------PPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA------------DLFYSLLESENYPG 328 (765)
T ss_pred C---------CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH------------HHHHHHHhcccHHH
Confidence 1 112334469999999999999999999999887762 2222 57778899999999
Q ss_pred HHHHHHHHhccCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----------
Q 005125 512 ACYAYSEGLEHEAY---------------NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----------- 565 (713)
Q Consensus 512 A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----------- 565 (713)
|+..++++....|. ...++..+|.++...|++++|++.+++++...|++..+++
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 99999999988763 2457789999999999999999999999999999988877
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 005125 566 -EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQ 599 (713)
Q Consensus 566 -~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 599 (713)
++|++.|++++.++|++..+...+......+.+|
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 9999999999999999988766665555444433
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-23 Score=206.72 Aligned_cols=230 Identities=17% Similarity=0.172 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY 406 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 406 (713)
+.++...|..++-.|++-.|...|..++. ++|.+. ..++.++..+....+-++....|.++..++|+++ .+|
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~-l~~~~~------~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~-dvY 397 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIK-LDPAFN------SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP-DVY 397 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHh-cCcccc------hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC-chh
Confidence 45677778888889999999999999999 999874 3378889999999999999999999999999996 899
Q ss_pred HHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 407 ALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG 486 (713)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 486 (713)
+.+|.+++-++++++|+..|++++.++|+ ++..+..++.+.++++++++++..|+.+.+..|+.++++.+
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe----------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~ 467 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLDPE----------NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNL 467 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcChh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999999999999996 56688999999999999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC
Q 005125 487 VKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY------NSVLLCNRAACR-SKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.|.++..+++|++|++.|.+|+++.|. ++..+.+.|.+. .-.+++..|+..+++|+++||.
T Consensus 468 ------------fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 468 ------------FAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK 535 (606)
T ss_pred ------------HHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch
Confidence 899999999999999999999999998 666666666543 3458999999999999999999
Q ss_pred ChHHHH------------HHHHHHHHHHHHhCCCCHHHH
Q 005125 560 YSKARL------------EAAIQDYEMLIREIPGNEEVG 586 (713)
Q Consensus 560 ~~~a~~------------~~A~~~~~~al~~~p~~~~~~ 586 (713)
...++. ++|++.|++++.+.-...+..
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~ 574 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMV 574 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 888776 899999999988865554443
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4.2e-23 Score=219.68 Aligned_cols=275 Identities=14% Similarity=0.085 Sum_probs=241.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY----HRAHHRLAM 335 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 335 (713)
...+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3577779999999999999999999999999999999999999999999999999999998854322 357899999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh----HHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA----PQVYALQAE 411 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~la~ 411 (713)
+|...|++++|+..|+++++ ..|.+. ..+..++..+...|++++|+..++++++..|... ...+..+|.
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~-~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVD-EGDFAE------GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHc-CCcchH------HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 99999999999999999998 777653 4567778889999999999999999999887653 235677899
Q ss_pred HHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE-VIKGVKMA 490 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~ 490 (713)
++...|++++|+.+|+++++..|+ ...+++.+|.+|...|++++|+..|++++..+|.+.. .+.
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~----- 253 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQ----------CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP----- 253 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH-----
Confidence 999999999999999999998775 3457888999999999999999999999999887643 333
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.++.++...|++++|+..++++++..|+... +..++.++.+.|++++|+..++++++.+|++....
T Consensus 254 -------~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 254 -------KLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 6899999999999999999999999997654 48999999999999999999999999999876543
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4.8e-24 Score=218.63 Aligned_cols=296 Identities=16% Similarity=0.156 Sum_probs=261.3
Q ss_pred HHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 261 ELKFMGNEAYN--KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 261 ~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
.+..+|..|.. +-+..+|+..|.+.-...++...++..+|.+|+.+++|++|..+|+.+-.+.|-..+..-.+..++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 45556655554 5567999999999777788888999999999999999999999999999999977666555666666
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
.+.+--+--...+..+. .+|..+ ..|...|..+.-+++++.|++.|+++++++|.+. .+|.++|.-+....+
T Consensus 399 HLq~~v~Ls~Laq~Li~-~~~~sP------esWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa-YayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLID-TDPNSP------ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA-YAYTLLGHESIATEE 470 (638)
T ss_pred HHHhhHHHHHHHHHHHh-hCCCCc------HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc-hhhhhcCChhhhhHH
Confidence 66554443344555666 888876 7788899999999999999999999999999986 899999999999999
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
+|.|..+|+.|+..+|.++. +|+.+|.+|.++++++.|.-+|++|++++|.+..... .
T Consensus 471 ~d~a~~~fr~Al~~~~rhYn----------AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~------------~ 528 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYN----------AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILC------------H 528 (638)
T ss_pred HHhHHHHHHhhhcCCchhhH----------HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHh------------h
Confidence 99999999999999998777 5677899999999999999999999999999988877 5
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------H
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------E 566 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~ 566 (713)
+|.++.+.|+.++|+..|++|+.++|.++...+..|.++..++++++|+..+++.-++-|+...+++ +
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 8999999999999999999999999999999999999999999999999999999999999988777 8
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 005125 567 AAIQDYEMLIREIPGNEEVG 586 (713)
Q Consensus 567 ~A~~~~~~al~~~p~~~~~~ 586 (713)
.|+..|.-|+.++|.-..+.
T Consensus 609 ~Al~~f~~A~~ldpkg~~i~ 628 (638)
T KOG1126|consen 609 LALLHFSWALDLDPKGAQIQ 628 (638)
T ss_pred HHHHhhHHHhcCCCccchhh
Confidence 99999999999999876643
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=9.4e-23 Score=232.04 Aligned_cols=277 Identities=13% Similarity=0.063 Sum_probs=222.1
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 278 ALALYDRAIAINSS--KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 278 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+...+.+++..+|. ++.+|+++|.++.. +++.+|+..+.+++...|++. .+..+|.++...|++++|+.+|++++.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44555555666677 88888888888887 788888888888888888754 366667777788889999888888877
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 356 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
..|.+. .++..+..+...|++++|+..++++++.+|+.. ..+..++..+...|++++|+..|+++++..|+
T Consensus 538 -~~p~~~-------a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~-~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~ 608 (987)
T PRK09782 538 -HDMSNE-------DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN-ALYWWLHAQRYIPGQPELALNDLTRSLNIAPS 608 (987)
T ss_pred -cCCCcH-------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 655542 345667778888888888888888888888774 55555666666779999999999999888873
Q ss_pred hHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Q 005125 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515 (713)
Q Consensus 436 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 515 (713)
+.++..+|.++.+.|++++|+..|++++.++|+++.++. ++|.++...|++++|+..
T Consensus 609 -----------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~------------nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 609 -----------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQA------------ALGYALWDSGDIAQSREM 665 (987)
T ss_pred -----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHCCCHHHHHHH
Confidence 346788889999999999999999999999999888877 688888899999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCH
Q 005125 516 YSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNE 583 (713)
Q Consensus 516 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~ 583 (713)
|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|+...... +.|.+.|.+++.++|...
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999999999999999999999999999988765544 777888888888888776
Q ss_pred HHHHHH
Q 005125 584 EVGRAL 589 (713)
Q Consensus 584 ~~~~~l 589 (713)
+....
T Consensus 746 -a~~~~ 750 (987)
T PRK09782 746 -IGLRS 750 (987)
T ss_pred -hcccc
Confidence 44443
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.3e-22 Score=212.37 Aligned_cols=372 Identities=12% Similarity=0.056 Sum_probs=273.2
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhh--hcCCCC--chhhhHhh---cCCC-CHHHHHHHHHHHHHhcCHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNI--VKQPSG--EFPQCISS---LNKL-DPEELKFMGNEAYNKARFEDA 278 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~--~~~~~~--~a~~~~~~---~~~~-~~~~~~~lg~~~~~~g~~~~A 278 (713)
+.|...|.-++...|+ + .+.++|.. .+..++ .|..+|.. ++|. -++....+|.++...|+.+.|
T Consensus 147 ~~A~a~F~~Vl~~sp~----N----il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPD----N----ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKA 218 (1018)
T ss_pred HHHHHHHHHHHhhCCc----c----hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhH
Confidence 4566666666665553 1 22223332 223222 24555544 2222 234455556666666666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 279 LALYDRAIAINSSKATYRSNKSAALIGLG---RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 279 ~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+..|.++++++|.++.++..||.+-.... .+..++..+.++...++.+|.++..|+..|+..|+|+.+......++.
T Consensus 219 ~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 219 LLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 66666666666666666666655554433 345566666666666666666666777777777777777776666665
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 356 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
..-. .......++.+|..+..+|+|++|..+|.++++.++++....++.+|..|+..|+++.|+.+|++.+...|+
T Consensus 299 -~t~~---~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 299 -NTEN---KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred -hhhh---hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 3211 122335578889999999999999999999999999986577888999999999999999999999999886
Q ss_pred hHHhhhcccCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------------
Q 005125 436 YYTKLFGLAGGAYLLIVRAQVYIAAG----RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA------------------- 492 (713)
Q Consensus 436 ~~~~~~~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~------------------- 492 (713)
. ...+..+|.+|...+ ..+.|..++.++++..|.+.++|..+..+..
T Consensus 375 ~----------~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 375 N----------YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILE 444 (1018)
T ss_pred h----------HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 4 447788899988875 6788999999999999999999887665432
Q ss_pred -------HHHHHHHHHHHHHcccHHHHHHHHHHHhcc-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 493 -------MASARLRGNLLFKASKYKEACYAYSEGLEH-----EAYN-----SVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 493 -------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
+..+.++|..++..|++.+|...|..|+.. +++. ....+|+|.|+..+++++.|.+.|..++.
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 556789999999999999999999999976 2222 23589999999999999999999999999
Q ss_pred hCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Q 005125 556 VMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQR 600 (713)
Q Consensus 556 ~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 600 (713)
..|.+.++++ .+|...+..++..+..+++++..+..+......|.
T Consensus 525 ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 525 EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 9999999988 78999999999999999999988887766665554
No 23
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-23 Score=203.06 Aligned_cols=316 Identities=29% Similarity=0.373 Sum_probs=272.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
++-....|..++...+|.+|+..|..|++..|+++..|.+.+.++...+++++|...+++.+.++|.....+...+.|+.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh--HHHHHHHHHHHHHc
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA--PQVYALQAEALLRL 416 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~la~~~~~~ 416 (713)
.+++..+|.+.|+..-. . .-..++..+++.+....+.+ ..+..+.+.++...
T Consensus 129 a~~~~i~A~~~~~~~~~----~----------------------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~ 182 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQA----Y----------------------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFL 182 (486)
T ss_pred hhHHHHHHHHHhhhhhh----h----------------------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhc
Confidence 99999999887773211 1 11122333333333322211 24556678999999
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASA 496 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 496 (713)
+++++|...--..+++++. +.++++..|.+++..++.+.|+.+|++++.++|++...-.......++..+
T Consensus 183 ~~~~~a~~ea~~ilkld~~----------n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDAT----------NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred ccchhHHHHHHHHHhcccc----------hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHH
Confidence 9999999999999998884 677899999999999999999999999999999999998888888889999
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-------
Q 005125 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYN----SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------- 565 (713)
Q Consensus 497 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------- 565 (713)
...|+-.++.|+|.+|.++|..+|.++|++ +..|.++|.+...+|+..+|+..++.|+.++|.+..++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999976 678999999999999999999999999999999998887
Q ss_pred -----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCccc-ccccccc
Q 005125 566 -----EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDV-KDMKFGS 611 (713)
Q Consensus 566 -----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~g~ 611 (713)
++|+++|+++++...+ .+..+.|.+++..|++.+..+. ...|.+.
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilGi~~ 383 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILGISR 383 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhhhhh
Confidence 8999999999999887 8899999999999987666543 3344433
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=2.2e-22 Score=228.98 Aligned_cols=274 Identities=7% Similarity=-0.057 Sum_probs=248.2
Q ss_pred cCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 254 LNKL--DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHH 331 (713)
Q Consensus 254 ~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 331 (713)
..|. ++.+|+.+|.++.. +++++|+..|.+++...|++. ....+|.++...|++++|+..|++++...|.. ..++
T Consensus 470 ~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~ 546 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLL 546 (987)
T ss_pred cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHH
Confidence 4566 99999999999987 899999999999999999754 46667888889999999999999988776654 5678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE 411 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~ 411 (713)
.+|.++...|++++|+.+|++++. .+|.+. ......+......|++++|+..++++++.+|+ +.++..+|.
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~-l~P~~~------~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~--~~a~~~LA~ 617 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQ-RGLGDN------ALYWWLHAQRYIPGQPELALNDLTRSLNIAPS--ANAYVARAT 617 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-cCCccH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 999999999999999999999999 888774 22223344455669999999999999999996 589999999
Q ss_pred HHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 491 (713)
++.+.|++++|+.+|++++.+.|+ ++.++.++|.++...|++++|+..|+++++++|+++.++.
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd----------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~------ 681 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPN----------NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR------ 681 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------
Confidence 999999999999999999999996 5668999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 492 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
++|.++...|++++|+.+|+++++++|+.+.+....|.+.....+++.|.+.+.++..++|+..
T Consensus 682 ------nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 682 ------QLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred ------HHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 7999999999999999999999999999999999999999999999999999999999999876
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.8e-22 Score=212.34 Aligned_cols=295 Identities=11% Similarity=-0.001 Sum_probs=247.1
Q ss_pred hhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q 005125 236 MGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK----ATYRSNKSAALIGL 306 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~ 306 (713)
.|..+...+ ++|...+.+ .+|.++.++..+|..+...|++++|+..+++++...+.. ..++..+|.+|...
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344444444 456666666 667888899999999999999999999999998854332 35788999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHH
Q 005125 307 GRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWND 386 (713)
Q Consensus 307 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (713)
|++++|+..|+++++.+|.+..++..++.++...|++++|++.+++++. ..|.+... .....+..++..+...+++++
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK-LGGDSLRV-EIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH-hcCCcchH-HHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999999999999999999999999999999998 77765321 122345678888899999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHH
Q 005125 387 LLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466 (713)
Q Consensus 387 A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 466 (713)
|+..++++++..|+.. .++..+|.+|...|++++|+..|++++...|.. ...++..++.+|...|++++|
T Consensus 199 A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 199 ARALLKKALAADPQCV-RASILLGDLALAQGDYAAAIEALERVEEQDPEY---------LSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHHHHHHHhHCcCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh---------HHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999998875 788889999999999999999999999887753 234678899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH--cCCHH
Q 005125 467 VKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK--LGQYE 544 (713)
Q Consensus 467 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~ 544 (713)
+..+++++...|+.... . .+|.++...|++++|+..|+++++..|++..+...++..+.. .|+.+
T Consensus 269 ~~~l~~~~~~~p~~~~~-~------------~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~ 335 (389)
T PRK11788 269 LEFLRRALEEYPGADLL-L------------ALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAK 335 (389)
T ss_pred HHHHHHHHHhCCCchHH-H------------HHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccch
Confidence 99999999999987544 3 589999999999999999999999999887665445444322 55888
Q ss_pred HHHHHHHHHHH
Q 005125 545 KAVEDCTAALI 555 (713)
Q Consensus 545 ~A~~~~~~al~ 555 (713)
+|+..+++.++
T Consensus 336 ~a~~~~~~~~~ 346 (389)
T PRK11788 336 ESLLLLRDLVG 346 (389)
T ss_pred hHHHHHHHHHH
Confidence 88888887664
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.9e-22 Score=212.79 Aligned_cols=368 Identities=17% Similarity=0.139 Sum_probs=274.6
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC-----CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS-----GEFPQCISS---LNKLDPEELKFMGNEAYNKARFED 277 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~-----~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~ 277 (713)
.+.|+..|+++++++|. .+.+.. .||.+..... ..+...+.. .++.+|.++..++..++..|+|..
T Consensus 215 ~~~a~~a~~ralqLdp~--~v~alv----~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDPT--CVSALV----ALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred hhhHHHHHHHHHhcChh--hHHHHH----HHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHH
Confidence 45899999999999973 334222 2444444433 337777666 778888888888888888888888
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 278 ALALYDRAIAINS---SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-HRAHHRLAMLYFRLGEAEKAVSHYKKS 353 (713)
Q Consensus 278 A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 353 (713)
+..++..++...- --++.++.+|.+|..+|+|++|..+|.++++.++++ .-.++.+|..|...|+++.|..+|++.
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 8888777776542 234567778888888888888888888888877777 667777888888888888888888887
Q ss_pred hhhhccccHHHHHHH--------------------------------HHHHHHHHHHHHhhcHHHHHHHHHHHHHc----
Q 005125 354 SSLANQKDIAKAEAL--------------------------------HKHLTKCNEARELKRWNDLLKETQNVISF---- 397 (713)
Q Consensus 354 l~~~~p~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 397 (713)
+. ..|++......+ .+++.++..+....-|. ++..|..|+..
T Consensus 369 ~k-~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 369 LK-QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESK 446 (1018)
T ss_pred HH-hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHc
Confidence 77 777765432211 23344444444444444 48888887743
Q ss_pred CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 398 GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 398 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
....++++++++|..++.+|++.+|...|..|+.......+.-.+........|++|.++..+++++.|.+.|...+..+
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 22255799999999999999999999999999876221111001111235578999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 478 p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
|...+++. .+|......++..+|...++.++..+..++.++..+|.+|+...++..|.+-|+..++.-
T Consensus 527 p~YId~yl------------Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 527 PGYIDAYL------------RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred chhHHHHH------------HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 99999887 588788889999999999999999999999999999999999999999999777777643
Q ss_pred CCChHHHH--------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 558 PSYSKARL--------------------------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 558 p~~~~a~~--------------------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
....++|. ++|++.|.++|+.+|.|.-+..++.-+.
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVL 656 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhh
Confidence 33322221 8999999999999999988877765443
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8e-22 Score=193.11 Aligned_cols=288 Identities=16% Similarity=0.098 Sum_probs=248.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
-|...-.-...|.+.+.+.|+++|+..|+...+.+|-..+-+-....+++-..+-.+-.-..+.+..++.-.++....+|
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa 337 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA 337 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence 56667777777888888888888888888888888877776666777777666666666666777777877788888999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 005125 335 MLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALL 414 (713)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 414 (713)
+.|...++.++|+.+|++|++ ++|.. +.+|...|..+.++.+-..|+..|++|++++|.+. .+|+.+|++|.
T Consensus 338 NYYSlr~eHEKAv~YFkRALk-LNp~~------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy-RAWYGLGQaYe 409 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALK-LNPKY------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY-RAWYGLGQAYE 409 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHh-cCcch------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH-HHHhhhhHHHH
Confidence 999999999999999999999 99987 47888899999999999999999999999999997 89999999999
Q ss_pred HccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005125 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMA 494 (713)
Q Consensus 415 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 494 (713)
-++.+.=|+-+|++|....|. +..+|..+|.||.++++.++|+.+|.+|+.....+..++.
T Consensus 410 im~Mh~YaLyYfqkA~~~kPn----------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~--------- 470 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPN----------DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV--------- 470 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCC----------chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH---------
Confidence 999999999999999999995 5679999999999999999999999999999888777776
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhc-------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 005125 495 SARLRGNLLFKASKYKEACYAYSEGLE-------HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEA 567 (713)
Q Consensus 495 ~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 567 (713)
.+|.++.+.+++++|..+|++.++ ..|+...+...||.-+.+.+++++|..++.+++.-++.- ++
T Consensus 471 ---~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~-----ee 542 (559)
T KOG1155|consen 471 ---RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC-----EE 542 (559)
T ss_pred ---HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH-----HH
Confidence 699999999999999999999998 456567777789999999999999999999988764432 55
Q ss_pred HHHHHHHHHH
Q 005125 568 AIQDYEMLIR 577 (713)
Q Consensus 568 A~~~~~~al~ 577 (713)
|...++++..
T Consensus 543 ak~LlReir~ 552 (559)
T KOG1155|consen 543 AKALLREIRK 552 (559)
T ss_pred HHHHHHHHHH
Confidence 6555555443
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.4e-21 Score=185.66 Aligned_cols=314 Identities=15% Similarity=0.089 Sum_probs=248.2
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH-----------------------------HHHHHHHHc
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRS-----------------------------NKSAALIGL 306 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----------------------------~la~~~~~~ 306 (713)
..|+..++..|.++...|....|+..|..++...|.+-.+|. .++.++..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 345666777788888888888888888877777665544443 345556666
Q ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHH-------------
Q 005125 307 GRQIEALVECKEAIRI-DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL------------- 372 (713)
Q Consensus 307 g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~------------- 372 (713)
.+.++++.-++..+.. -|.+...-...|.++..+.++++|+..|+...+ -+|-.....+.+...+
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k-nDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK-NDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-cCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 7788888888888887 788888888999999999999999999999999 7876543322211110
Q ss_pred ---------------HHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhH
Q 005125 373 ---------------TKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYY 437 (713)
Q Consensus 373 ---------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 437 (713)
-.+.-+.-.++.++|+.+|+++++++|... .+|.++|.-|..+.+...|+..|++|++++|.+.
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~-~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy 398 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL-SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY 398 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh-HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH
Confidence 113334456788999999999999999886 8899999999999999999999999999999765
Q ss_pred HhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005125 438 TKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYS 517 (713)
Q Consensus 438 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 517 (713)
. +|+.+|+.|.-++...=|+-+|++|++..|++...|. .+|.+|.+.++.++|+++|.
T Consensus 399 R----------AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~------------aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 399 R----------AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV------------ALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred H----------HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH------------HHHHHHHHhccHHHHHHHHH
Confidence 5 6677899999999999999999999999999999988 69999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCChHHHH------------HHHHHHHHHHHHh
Q 005125 518 EGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV-------MPSYSKARL------------EAAIQDYEMLIRE 578 (713)
Q Consensus 518 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~------------~~A~~~~~~al~~ 578 (713)
+++.....+..++..||.+|.++++..+|..+|++.++. +|+-..+.. ++|-.+..+++.-
T Consensus 457 rai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 457 RAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 999998888899999999999999999999999999883 343333332 6777777777777
Q ss_pred CCCCHHHHHHHHHHH
Q 005125 579 IPGNEEVGRALFEAQ 593 (713)
Q Consensus 579 ~p~~~~~~~~l~~~~ 593 (713)
++.-.++...+.+++
T Consensus 537 ~~e~eeak~LlReir 551 (559)
T KOG1155|consen 537 ETECEEAKALLREIR 551 (559)
T ss_pred CchHHHHHHHHHHHH
Confidence 666666665555544
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.8e-20 Score=188.46 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=251.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
++++.+...+..++..++|.+-.+.++..++.+|-+..++-..-.++..+|+..+-...-.+.++..|+.+-.|+..|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 56788999999999999999999999999999998877665555599999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL 416 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 416 (713)
|...|++.+|..+|.++.. ++|... .+|+..|..+...+..++|+..|..|-++-|... .-...+|.-|...
T Consensus 322 Yl~i~k~seARry~SKat~-lD~~fg------paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t 393 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATT-LDPTFG------PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRT 393 (611)
T ss_pred HHHhcCcHHHHHHHHHHhh-cCcccc------HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHh
Confidence 9999999999999999999 999985 6788889999999999999999999999988775 4455669999999
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID----PNNKEVIKGVKMAKA 492 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~ 492 (713)
+.++-|..+|.+|+.+.|. ++.++..+|.+.+..+.|.+|..+|+.++..- +... .|.
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~----------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~------- 455 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPS----------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWE------- 455 (611)
T ss_pred ccHHHHHHHHHHHHhcCCC----------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chh-------
Confidence 9999999999999999995 67789999999999999999999999999432 2221 222
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
..+.++|.++.+++.+++|+.+|+++|.+.|.++.++..+|.+|..+|+++.|+++|.++|.++|++..
T Consensus 456 -p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 456 -PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred -HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 223489999999999999999999999999999999999999999999999999999999999999844
No 30
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.88 E-value=1.6e-20 Score=176.99 Aligned_cols=314 Identities=11% Similarity=0.106 Sum_probs=256.7
Q ss_pred hhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005125 236 MGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQI 310 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 310 (713)
+|..+...+ ..|...|.. .+|++-.+++..|.+|+..|+-.-|+.-+.++|++.|+...+...+|.+++.+|+++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 444444444 234444444 788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC---HHHH------------HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHH
Q 005125 311 EALVECKEAIRIDPCY---HRAH------------HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKC 375 (713)
Q Consensus 311 ~A~~~~~~al~~~p~~---~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~ 375 (713)
+|+..|+++|..+|.+ .++. ......+...|++..|++...+.++ +.|-+. ..+..++
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE-i~~Wda------~l~~~Ra 196 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE-IQPWDA------SLRQARA 196 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-cCcchh------HHHHHHH
Confidence 9999999999999955 2222 2333455667999999999999999 888663 5566788
Q ss_pred HHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh--hcccCcHHHHHHH
Q 005125 376 NEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL--FGLAGGAYLLIVR 453 (713)
Q Consensus 376 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~l 453 (713)
.++...|+...||..++.+-++..++. +.++.++.+++..|+.+.++...+++++++|++..-+ +.......-...-
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~DnT-e~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQDNT-EGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccccch-HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999988886 8888999999999999999999999999999864311 1000011111222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHH
Q 005125 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNR 533 (713)
Q Consensus 454 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 533 (713)
+.-....++|.++++..++.++.+|..+..... ....+..++...+++.+|+..+.++++.+|+++.+++.+
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~--------~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN--------GFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeee--------eeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 445567889999999999999999986554431 112467888899999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 534 AACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 534 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|.+|+....|+.|+..|++|.+.++++..+.-
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999999999987765
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=2.5e-19 Score=200.18 Aligned_cols=358 Identities=14% Similarity=0.036 Sum_probs=266.4
Q ss_pred HHHHHHHhhhhcCCCcc-ccccccccccchhhhhcCCC--CchhhhHhh-cCCCCHHHHHHH--HHHHHHhcCHHHHHHH
Q 005125 208 KTVDYLYKNLQDVPKQR-YGESRLGRNGVMGNIVKQPS--GEFPQCISS-LNKLDPEELKFM--GNEAYNKARFEDALAL 281 (713)
Q Consensus 208 ~Ai~~~~kal~~~P~~~-~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~-~~~~~~~~~~~l--g~~~~~~g~~~~A~~~ 281 (713)
.|+..|+++++.+|... ... -+..++...| ++|...+++ ..|.+...+..+ |..+...|+|++|+++
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~-------dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVD-------DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred HHHHHHHHHHhhCccchhhHH-------HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998531 111 1222222334 678888888 665555555555 7799999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 282 YDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 282 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...++..+|+..|+++++ .+|++
T Consensus 125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~-~~P~n 202 (822)
T PRK14574 125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVR-LAPTS 202 (822)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHH-hCCCC
Confidence 999999999999999999999999999999999999999999986554 5667777778888789999999999 99987
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 005125 362 IAKAEALHKHLT-------------------------------------------------------------------- 373 (713)
Q Consensus 362 ~~~~~~~~~~~~-------------------------------------------------------------------- 373 (713)
......+...+.
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 643221111100
Q ss_pred ---------------HHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHH
Q 005125 374 ---------------KCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYT 438 (713)
Q Consensus 374 ---------------~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 438 (713)
+...+...+++.+++..|+..-.....-++.+....|..|+..++.++|+.+|++++.-.++.
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~-- 360 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT-- 360 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--
Confidence 011111234444444444444333322233556667888888888888888888887655321
Q ss_pred hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005125 439 KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN------------NKEVIKGVKMAKAMASARLRGNLLFKA 506 (713)
Q Consensus 439 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~lg~~~~~~ 506 (713)
............|...|...+++++|..++++..+..|- |++ |. .....++.++...
T Consensus 361 --~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d-~~--------~~~~l~a~~~~~~ 429 (822)
T PRK14574 361 --FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD-WI--------EGQTLLVQSLVAL 429 (822)
T ss_pred --cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc-HH--------HHHHHHHHHHHHc
Confidence 000112333466788899999999999999999885551 111 11 1223588889999
Q ss_pred ccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHH
Q 005125 507 SKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEM 574 (713)
Q Consensus 507 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~ 574 (713)
|++.+|.+.+++.+...|.++.++..+|.++...|.+.+|...++.++.++|++..+.+ .+|....++
T Consensus 430 gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988777 667777777
Q ss_pred HHHhCCCCHHHHH
Q 005125 575 LIREIPGNEEVGR 587 (713)
Q Consensus 575 al~~~p~~~~~~~ 587 (713)
+++..|+++.+..
T Consensus 510 l~~~~Pe~~~~~~ 522 (822)
T PRK14574 510 VISRSPEDIPSQE 522 (822)
T ss_pred HHhhCCCchhHHH
Confidence 7999999997664
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=1.3e-19 Score=191.72 Aligned_cols=308 Identities=18% Similarity=0.174 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
...++..|+.++..|++++|..++.++|+.+|.++.+|+.||.+|.++|+.+++...+-.|..++|.+.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 45688888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChH----HHHHHHHHHHH
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP----QVYALQAEALL 414 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~la~~~~ 414 (713)
.+|.+..|.-+|.+|++ .+|.+. ...+.++..+.++|+...|...|.+++...|.... ..-...+..+.
T Consensus 219 ~~~~i~qA~~cy~rAI~-~~p~n~------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQ-ANPSNW------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred hcccHHHHHHHHHHHHh-cCCcch------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999883 66788888899999999999999999999984321 22233466777
Q ss_pred HccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH----------
Q 005125 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ--IDPNNKE---------- 482 (713)
Q Consensus 415 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~---------- 482 (713)
..++-+.|++.++.++....+. .....+..++.++++...++.|......... ..+++.+
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~--------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDE--------ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HhhHHHHHHHHHHHHHhhcccc--------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 7788899999999888732211 1233456678888888888888877655443 1111110
Q ss_pred ----------------H-HHHHHH-----------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Q 005125 483 ----------------V-IKGVKM-----------------------AKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522 (713)
Q Consensus 483 ----------------~-~~~~~~-----------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 522 (713)
+ +..+.. ......++.++.++...|+|.+|+.+|..++..
T Consensus 364 ~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred ccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 0 000000 012455778999999999999999999999988
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCC
Q 005125 523 EAY-NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPG 581 (713)
Q Consensus 523 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~ 581 (713)
.+. +..+|+.+|.||..+|.+++|+++|++++.+.|++.++++ ++|++.++....-++.
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 764 4789999999999999999999999999999999999888 7888888776644433
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=7.2e-22 Score=199.11 Aligned_cols=264 Identities=16% Similarity=0.190 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAI--NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
.+.+|..++..|++++|++.+.+.+.. .|++...|..+|.+...++++++|+..|++++..++.++..+..++.+ ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 347799999999999999999776554 488999999999999999999999999999999999999999999888 79
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHccC
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA-DSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~la~~~~~~g~ 418 (713)
.+++++|+..++++.+ ..++. ..+......+...++++++...++++....+ ...+.+|..+|.++...|+
T Consensus 90 ~~~~~~A~~~~~~~~~-~~~~~-------~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYE-RDGDP-------RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred cccccccccccccccc-ccccc-------chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999998877 55432 2334455667788999999999998776541 2335788889999999999
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
+++|+.+|+++++..|+ +..++..++.++...|+++++.+.+.......|.++..+. .
T Consensus 162 ~~~A~~~~~~al~~~P~----------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~------------~ 219 (280)
T PF13429_consen 162 PDKALRDYRKALELDPD----------DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD------------A 219 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-----------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH------------H
T ss_pred HHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH------------H
Confidence 99999999999999996 4557888899999999999999999888888888887776 5
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+|.++..+|++++|+.+|++++..+|+++.++..+|.++...|+.++|...++++++.
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999988763
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4e-19 Score=178.30 Aligned_cols=346 Identities=15% Similarity=0.135 Sum_probs=243.9
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCCC--chhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPSG--EFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~~--~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
+.||.+|..++.++|... .++ .+ -..+|..+++ +|..--.+ +.|.-+..|..+|..++..|+|++|+..
T Consensus 19 ~~ai~~~t~ai~l~p~nh---vly-Sn--rsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLSPTNH---VLY-SN--RSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred HHHHHHHHHHHccCCCcc---chh-cc--hHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 499999999999998522 111 11 2344444552 23332222 8999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC---------------------HHHHHHHHHHHHH---h---------------
Q 005125 282 YDRAIAINSSKATYRSNKSAALIGLGR---------------------QIEALVECKEAIR---I--------------- 322 (713)
Q Consensus 282 ~~~al~~~p~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~al~---~--------------- 322 (713)
|.+.|+.+|++..++.+++.++..... +-..-..|...++ .
T Consensus 93 y~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m 172 (539)
T KOG0548|consen 93 YSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLM 172 (539)
T ss_pred HHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHH
Confidence 999999999999999998888732200 0000011111111 0
Q ss_pred --------------------------CC------------C---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 323 --------------------------DP------------C---------YHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 323 --------------------------~p------------~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
.| + -......+|.......+++.|+++|..++.
T Consensus 173 ~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e 252 (539)
T KOG0548|consen 173 KADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE 252 (539)
T ss_pred HHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11 0 012456788888888999999999999999
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCCh-
Q 005125 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCL- 434 (713)
Q Consensus 356 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~- 434 (713)
++.+-.........++.++....-.+.-++|++.-........ .....+..+|..|...++++.|+.+|++++....
T Consensus 253 -l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k-lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 253 -LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK-LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred -HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH-HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 8733333333444555555555555555555544332211100 0234445567778888888888888888764322
Q ss_pred -hhHHh---------------hhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 435 -EYYTK---------------LFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 435 -~~~~~---------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
+.... ++++ ..+.-....|..++..|+|..|+.+|.+||..+|+++..+. |
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~p-e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs------------N 397 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINP-EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS------------N 397 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCh-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH------------H
Confidence 11111 1111 12344556699999999999999999999999999999988 8
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHh
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIRE 578 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~ 578 (713)
+|.+|.++|.+..|+...+.+++++|+....|...|.++..+.+|++|.+.|+++++++|++. +++..|.+++..
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~-----e~~~~~~rc~~a 472 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA-----EAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH-----HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999884 455555555553
No 35
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=5.6e-20 Score=172.26 Aligned_cols=235 Identities=15% Similarity=0.055 Sum_probs=195.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005125 263 KFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE 342 (713)
Q Consensus 263 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 342 (713)
..+|.+|++.|-+.+|...++.+++..|. ++.+..++.+|.+..+...|+..|.+.++..|.+...+..+|.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 46777777777777777777777776654 56666777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHH
Q 005125 343 AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEA 422 (713)
Q Consensus 343 ~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 422 (713)
+++|+++|+.+++ .+|.+. ++...+|.-|+.-++.+-|
T Consensus 306 ~~~a~~lYk~vlk-~~~~nv-----------------------------------------EaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 306 QEDALQLYKLVLK-LHPINV-----------------------------------------EAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHHHHHHHHHHHh-cCCccc-----------------------------------------eeeeeeeeccccCCChHHH
Confidence 7777777777777 666663 5566678889999999999
Q ss_pred HHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHH
Q 005125 423 HDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN---KEVIKGVKMAKAMASARLR 499 (713)
Q Consensus 423 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~l 499 (713)
+.+|++.+++.- .+++.++++|.|.+..++++-++..|++|+....+. .++|+ |+
T Consensus 344 lryYRRiLqmG~----------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWY------------Nl 401 (478)
T KOG1129|consen 344 LRYYRRILQMGA----------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWY------------NL 401 (478)
T ss_pred HHHHHHHHHhcC----------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhh------------cc
Confidence 999999998765 467799999999999999999999999999865433 34554 89
Q ss_pred HHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 500 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
|.+....|++.-|..+|+-++..++++.+++.|||.+-.+.|+.++|..++..|-.+.|+-.+
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred ceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 999999999999999999999999999999999999999999999999999999999997543
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=2e-19 Score=197.73 Aligned_cols=162 Identities=10% Similarity=0.034 Sum_probs=113.6
Q ss_pred HHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHH
Q 005125 261 ELKFMGNEAYN---KARFEDALALYDRAIAINSSKATYRSNKSAALIGL---------GRQIEALVECKEAIRIDPCYHR 328 (713)
Q Consensus 261 ~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~ 328 (713)
.++..|...+. .+++++|+.+|+++++++|+++.++..+|.+|..+ +++++|+..++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 45566654443 35678999999999999999999999999988744 3489999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYAL 408 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 408 (713)
++..+|.++...|++++|+.+|+++++ ++|++. ..++.++..+...|++++|+..++++++++|.+. .++..
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~-l~P~~~------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-~~~~~ 411 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANL-LSPISA------DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-AAGIT 411 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-hhHHH
Confidence 999999999999999999999999999 999884 2333344444444444444444444444444432 22222
Q ss_pred HHHHHHHccCHHHHHHHhhccc
Q 005125 409 QAEALLRLQRHQEAHDSYNKSP 430 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al 430 (713)
++.++...|++++|+..+++++
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHH
Confidence 2333333444444444444443
No 37
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=3.4e-20 Score=187.53 Aligned_cols=243 Identities=17% Similarity=0.162 Sum_probs=199.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 341 (713)
=+..|..+++.|+..+|+-+|+.|+..+|.++++|..||.+....++-..|+..++++++++|++.+++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHH
Q 005125 342 EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQE 421 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 421 (713)
.-.+|+.++.+-+. ..|...... .+.. .+++..- ..+.+ ...+..+
T Consensus 368 ~q~~Al~~L~~Wi~-~~p~y~~l~--------~a~~---~~~~~~~---------~s~~~-~~~l~~i------------ 413 (579)
T KOG1125|consen 368 LQNQALKMLDKWIR-NKPKYVHLV--------SAGE---NEDFENT---------KSFLD-SSHLAHI------------ 413 (579)
T ss_pred hHHHHHHHHHHHHH-hCccchhcc--------ccCc---cccccCC---------cCCCC-HHHHHHH------------
Confidence 99999999999988 666542100 0000 0000000 00001 1112222
Q ss_pred HHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005125 422 AHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGN 501 (713)
Q Consensus 422 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~ 501 (713)
.+.|-.+....|. ..++++...||.+|...|+|++|+.+|+.||...|++...|+ .+|.
T Consensus 414 -~~~fLeaa~~~~~--------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWN------------RLGA 472 (579)
T KOG1125|consen 414 -QELFLEAARQLPT--------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWN------------RLGA 472 (579)
T ss_pred -HHHHHHHHHhCCC--------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHH------------HhhH
Confidence 2223333222221 146779999999999999999999999999999999999998 6999
Q ss_pred HHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 502 LLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 502 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.+..-.+.++|+..|++|+++.|....+++|||.+++.+|.|++|+.+|-.||.+.+.
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999776
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=1.4e-18 Score=183.99 Aligned_cols=300 Identities=14% Similarity=0.082 Sum_probs=242.0
Q ss_pred CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 245 GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 245 ~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
++|..++.. .+|.++.+|+.+|.+|.++|+.++++..+-.|-.++|.+.+.|..++....++|++.+|.-+|.+||+
T Consensus 156 eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 156 EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 456666655 77888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
.+|.+....+..+.+|.++|++..|...|.+++. +.|.. +...........+..+...++-+.|++.++.++....+.
T Consensus 236 ~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~-~~p~~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 236 ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ-LDPPV-DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh-hCCch-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999 87722 111222233444666667777799999999998832221
Q ss_pred -hHHHHHHHHHHHHHccCHHHHHHHhhcccc--CChhhHH----------------------------------------
Q 005125 402 -APQVYALQAEALLRLQRHQEAHDSYNKSPK--FCLEYYT---------------------------------------- 438 (713)
Q Consensus 402 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~---------------------------------------- 438 (713)
....+..++.+++...+++.|.......-. ..++...
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~ 393 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKER 393 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccccc
Confidence 124566778899999999988877654322 0000000
Q ss_pred ------------hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 439 ------------KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK-EVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 439 ------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
........+..++.++.+|...|++.+|+.+|..+....+... ..|. .+|.+|..
T Consensus 394 e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~------------~~a~c~~~ 461 (895)
T KOG2076|consen 394 ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY------------KLARCYME 461 (895)
T ss_pred chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH------------HHHHHHHH
Confidence 0000123477899999999999999999999999888766543 3444 79999999
Q ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 558 (713)
+|.+++|+.+|++++...|++.++...|+.++.++|+.++|.+.++....-++
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 99999999999999999999999999999999999999999999998874443
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=4.2e-18 Score=190.45 Aligned_cols=351 Identities=14% Similarity=0.032 Sum_probs=268.9
Q ss_pred ccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005125 233 NGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG 307 (713)
Q Consensus 233 ~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 307 (713)
....+.+..+.| +.|...+.+ .+|.++.....+..++...|++++|+.++++++.-.|.....+..+|.++...|
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 345677788888 557887777 778886445588888889999999999999999334444555555588999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 005125 308 RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDL 387 (713)
Q Consensus 308 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A 387 (713)
++++|++.|+++++.+|+++.++..++.+|...++.++|++.++++.. .+|.+. ....++.++...++..+|
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~-~dp~~~-------~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE-RDPTVQ-------NYMTLSYLNRATDRNYDA 188 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc-cCcchH-------HHHHHHHHHHhcchHHHH
Confidence 999999999999999999999999999999999999999999999999 898852 224445555557777779
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhcc--------------------------------------
Q 005125 388 LKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS-------------------------------------- 429 (713)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------------------------------------- 429 (713)
+..++++++.+|++. .++..+..++...|-...|++...+-
T Consensus 189 L~~~ekll~~~P~n~-e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLAPTSE-EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999999999999986 66666666666666555444444432
Q ss_pred ----------cc---CChhhHHh---------------------------hh--cccCcHHHHHHHHHHHHHcCCHHHHH
Q 005125 430 ----------PK---FCLEYYTK---------------------------LF--GLAGGAYLLIVRAQVYIAAGRFEDAV 467 (713)
Q Consensus 430 ----------l~---~~~~~~~~---------------------------~~--~~~~~~~~~~~lg~~~~~~g~~~~A~ 467 (713)
+. ..|..... +. +...-.++....|..|+..++.++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 21 11110000 00 00112455666778888888888888
Q ss_pred HHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC---------------CCHH
Q 005125 468 KTAQDAAQIDPN----NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA---------------YNSV 528 (713)
Q Consensus 468 ~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~ 528 (713)
.+|++++.-.|. ..... ....|..++...++|++|..++++..+..| +...
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~----------~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLL----------DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HHHHHHhhccccccCCCcchH----------HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 888888775532 11111 011478889999999999999999987444 3367
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQL 596 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 596 (713)
+...++.++...|++.+|++.+++.+...|.+...+. .+|.+.++.++.++|++..+...+..+...+
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 7888999999999999999999999999999998877 8999999999999999999988888888888
Q ss_pred HHhcCc
Q 005125 597 KKQRGE 602 (713)
Q Consensus 597 ~~~~~~ 602 (713)
.+|+..
T Consensus 498 ~e~~~A 503 (822)
T PRK14574 498 QEWHQM 503 (822)
T ss_pred hhHHHH
Confidence 777643
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.84 E-value=5.9e-19 Score=178.00 Aligned_cols=225 Identities=15% Similarity=0.039 Sum_probs=140.2
Q ss_pred cCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 273 ARFEDALALYDRAIAI---NSS-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVS 348 (713)
Q Consensus 273 g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 348 (713)
+..+.++..+.++|.. +|. .+..|+.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4566677777777753 222 356677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhc
Q 005125 349 HYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK 428 (713)
Q Consensus 349 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 428 (713)
.|+++++ ++|++. .++.++|.++...|++++|+..|++
T Consensus 120 ~~~~Al~-l~P~~~-----------------------------------------~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 120 AFDSVLE-LDPTYN-----------------------------------------YAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred HHHHHHH-hCCCCH-----------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777 776652 5556666666666666666666666
Q ss_pred cccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 005125 429 SPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASK 508 (713)
Q Consensus 429 al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 508 (713)
+++..|++... ..| ..++...+++++|+..|.+++...+.. .|. .+.+....|+
T Consensus 158 al~~~P~~~~~--------~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-------------~~~~~~~lg~ 211 (296)
T PRK11189 158 FYQDDPNDPYR--------ALW---LYLAESKLDPKQAKENLKQRYEKLDKE--QWG-------------WNIVEFYLGK 211 (296)
T ss_pred HHHhCCCCHHH--------HHH---HHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-------------HHHHHHHccC
Confidence 66666643210 011 122334567777777776665443222 121 2233333444
Q ss_pred HHH--HHHHH----HHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHH
Q 005125 509 YKE--ACYAY----SEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP-SYSKARL 565 (713)
Q Consensus 509 ~~~--A~~~~----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~ 565 (713)
+.+ ++..+ +..+++.|..+++|+++|.++.++|++++|+.+|++|++.+| ++.+.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 212 ISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred CCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 322 22222 233345566677888888888888888888888888888876 4444433
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=1.2e-17 Score=176.96 Aligned_cols=297 Identities=11% Similarity=-0.031 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH-RAHHRLAMLY 337 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 337 (713)
.......|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|+.. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 334677888999999999999999999999998888888899999999999999999999999999875 5666679999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH---HHHHHHH
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA---LQAEALL 414 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---~la~~~~ 414 (713)
...|+++.|+..++++++ ..|++. ..+...+..+...|+|++|+..+.+.++....+...... .....+.
T Consensus 164 l~~~~~~~Al~~l~~l~~-~~P~~~------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLE-MAPRHK------EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHCCCHHHHHHHHHHHHH-hCCCCH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999996 556677888999999999999999999886554432211 2222224
Q ss_pred HccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005125 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMA 494 (713)
Q Consensus 415 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 494 (713)
..+..+++.+.+.++....|.... .++.++..++..+...|++++|++.++++++..|++.......
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~------~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~------- 303 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRR------HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPL------- 303 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHh------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHH-------
Confidence 445555566677777766664322 3677899999999999999999999999999999987532100
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCChHHHH-----
Q 005125 495 SARLRGNLLFKASKYKEACYAYSEGLEHEAYNS--VLLCNRAACRSKLGQYEKAVEDCT--AALIVMPSYSKARL----- 565 (713)
Q Consensus 495 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~a~~----- 565 (713)
-........++.+++++.++++++.+|+++ ..+..+|.++.+.|++++|.++|+ .+++..|+......
T Consensus 304 ---l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll 380 (409)
T TIGR00540 304 ---CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF 380 (409)
T ss_pred ---HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 133444556888999999999999999999 889999999999999999999999 68888898765333
Q ss_pred ------HHHHHHHHHHHHh
Q 005125 566 ------EAAIQDYEMLIRE 578 (713)
Q Consensus 566 ------~~A~~~~~~al~~ 578 (713)
++|.+.|++++..
T Consensus 381 ~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6777777776543
No 42
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=1.9e-18 Score=155.55 Aligned_cols=207 Identities=14% Similarity=0.119 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
.+...+|..|+..|++..|...+++||+.||++..+|..+|.+|...|+.+.|.+.|++|+.++|++.+++.+.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 419 (713)
+|++++|...|++|+. +|...
T Consensus 116 qg~~~eA~q~F~~Al~--~P~Y~--------------------------------------------------------- 136 (250)
T COG3063 116 QGRPEEAMQQFERALA--DPAYG--------------------------------------------------------- 136 (250)
T ss_pred CCChHHHHHHHHHHHh--CCCCC---------------------------------------------------------
Confidence 9999999999999987 44331
Q ss_pred HHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 005125 420 QEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLR 499 (713)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~l 499 (713)
..+..+-++|.|..+.|+++.|.++|+++++++|+++.... .+
T Consensus 137 -------------------------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l------------~~ 179 (250)
T COG3063 137 -------------------------EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL------------EL 179 (250)
T ss_pred -------------------------CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH------------HH
Confidence 13346677788888888889999999999999998888776 68
Q ss_pred HHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 500 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
+...+..|+|..|..++++.....+-.++.+.....+-..+|+-+.|-.+=.+.....|....
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 888889999999998888888877777888877778888888888888888887777777643
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=6.4e-18 Score=179.18 Aligned_cols=296 Identities=13% Similarity=0.029 Sum_probs=234.7
Q ss_pred hhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHH
Q 005125 237 GNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA-TYRSNKSAALIGLGRQI 310 (713)
Q Consensus 237 g~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~ 310 (713)
|.+....| +.|...+.+ ..|.....+...|..+..+|++++|..+|.++.+..|+.. .+....+.++...|+++
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 33344444 346666655 5666777788889999999999999999999999999875 46666799999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 005125 311 EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKE 390 (713)
Q Consensus 311 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 390 (713)
+|+..++++++..|+++.++..++.+|...|++++|++.+.+..+ ....+......+.. .........+..+++...
T Consensus 171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k-~~~~~~~~~~~l~~--~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 171 AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK-AGLFDDEEFADLEQ--KAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCCCCHHHHHHHHH--HHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999999999999999999987 54333322211111 111111233444556677
Q ss_pred HHHHHHcCCCC---hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHH
Q 005125 391 TQNVISFGADS---APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAV 467 (713)
Q Consensus 391 ~~~al~~~p~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 467 (713)
+..+....|.. .+.++..++..+...|++++|+..++++++..|++.... ............++.+.++
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--------~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--------LPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--------hHHHHHhhhcCCCChHHHH
Confidence 88888877742 458999999999999999999999999999988753210 1122344445568899999
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH--HHhccCCCCHHHHHHHHHHHHHcCCH
Q 005125 468 KTAQDAAQIDPNNK--EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYS--EGLEHEAYNSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 468 ~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~ 543 (713)
+.++++++..|+++ .... .+|.++++.|+|++|.++|+ .+++..|+... +..+|.++.++|+.
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~------------sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~ 386 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINR------------ALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDK 386 (409)
T ss_pred HHHHHHHHhCCCChhHHHHH------------HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCH
Confidence 99999999999999 5555 69999999999999999999 68888886655 66999999999999
Q ss_pred HHHHHHHHHHHHh
Q 005125 544 EKAVEDCTAALIV 556 (713)
Q Consensus 544 ~~A~~~~~~al~~ 556 (713)
++|.+++++++..
T Consensus 387 ~~A~~~~~~~l~~ 399 (409)
T TIGR00540 387 AEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 44
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.1e-18 Score=164.08 Aligned_cols=314 Identities=13% Similarity=0.050 Sum_probs=254.6
Q ss_pred cCCCCHHHHH-HHHHHHHHhcCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 254 LNKLDPEELK-FMGNEAYNKARF--EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 254 ~~~~~~~~~~-~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
..|..++.+. ..+.+....++. .-+..++-.-....|++...+..+|.+++..|++.+|+..|+++.-++|....+.
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 4455554333 233444444444 4445555666667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQA 410 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la 410 (713)
-..|.++...|+++.--......+. .+... ...|+-.+.......++..|+...+++|+.+|.+. ..+...|
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~-~~~~t------a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~-~alilKG 341 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFA-KVKYT------ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH-EALILKG 341 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHh-hhhcc------hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc-hHHHhcc
Confidence 9999999999999887666666655 44332 23455666777788899999999999999999987 7888889
Q ss_pred HHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 411 EALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
.++..+++.++|+-.|+.|..+.|- ..+.|..+-.+|...|++.+|....+.++..-|.++..+.+
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~----------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL---- 407 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPY----------RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTL---- 407 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchh----------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhh----
Confidence 9999999999999999999999885 44577788899999999999999999999999999888773
Q ss_pred HHHHHHHHHH-HH-HHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH---
Q 005125 491 KAMASARLRG-NL-LFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL--- 565 (713)
Q Consensus 491 ~~~~~~~~lg-~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--- 565 (713)
+| .+ +..-.--++|.+++++++.+.|....+-..+|.++...|.+++++..+++++...|+...-..
T Consensus 408 --------~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 408 --------FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGD 479 (564)
T ss_pred --------hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHH
Confidence 44 33 344445689999999999999999999999999999999999999999999999998753322
Q ss_pred --------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 005125 566 --------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLK 597 (713)
Q Consensus 566 --------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 597 (713)
++|+..|..||+++|++.....++.....+..
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 89999999999999999999999877654443
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9.3e-19 Score=176.21 Aligned_cols=258 Identities=14% Similarity=0.077 Sum_probs=221.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+|-++..+-..--+++..|+..+-..+-.+.++.+|+.+..|+..|.-|...|++.+|..+|.++..++|....+|...
T Consensus 273 ~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~f 352 (611)
T KOG1173|consen 273 KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAF 352 (611)
T ss_pred hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHH
Confidence 45666655554444889999999888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
|..|...|+.++|+.+|..|-+ +-|... ...+-.+..+..++.+.-|.+.|.+++.+.|.++ .++..+|.+.
T Consensus 353 ghsfa~e~EhdQAmaaY~tAar-l~~G~h------lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp-lv~~Elgvva 424 (611)
T KOG1173|consen 353 GHSFAGEGEHDQAMAAYFTAAR-LMPGCH------LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP-LVLHELGVVA 424 (611)
T ss_pred hHHhhhcchHHHHHHHHHHHHH-hccCCc------chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc-hhhhhhhhee
Confidence 9999999999999999999999 766652 4567778888999999999999999999999985 8888999999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
+..+.|.+|+.+|+.++...+....... .-...+.++|.+|.+++++++|+.+|+++|.+.|.+...+.
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~e~~---~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~a-------- 493 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLNEKI---FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHA-------- 493 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhcccccc---chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHH--------
Confidence 9999999999999999843332211100 11336899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRA 534 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 534 (713)
.+|.++..+|+++.|++.|.+++.+.|++..+--.|+
T Consensus 494 ----sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 494 ----SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred ----HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 6999999999999999999999999999866555555
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=1.2e-18 Score=175.77 Aligned_cols=216 Identities=11% Similarity=-0.015 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+..|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..++.++|.++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcc
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQ 417 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g 417 (713)
...|++++|+..|+++++ .+|++... .+| ..++...+
T Consensus 143 ~~~g~~~eA~~~~~~al~-~~P~~~~~---------------------------------------~~~---~~l~~~~~ 179 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQ-DDPNDPYR---------------------------------------ALW---LYLAESKL 179 (296)
T ss_pred HHCCCHHHHHHHHHHHHH-hCCCCHHH---------------------------------------HHH---HHHHHccC
Confidence 999999999999999999 99987410 011 12233456
Q ss_pred CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHH
Q 005125 418 RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDA-------AQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 418 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~~~~~ 490 (713)
++++|+..|.+++...+.. .|. .+.++...|++.++ ..++.+ .++.|...++|.
T Consensus 180 ~~~~A~~~l~~~~~~~~~~------------~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~----- 240 (296)
T PRK11189 180 DPKQAKENLKQRYEKLDKE------------QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYF----- 240 (296)
T ss_pred CHHHHHHHHHHHHhhCCcc------------ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHH-----
Confidence 7777777776654322110 111 24555556665443 233333 344555556665
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHcCC
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEA-YNSVLLCNRAACRSKLGQ 542 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~ 542 (713)
++|.++...|++++|+.+|+++++.+| +..+..+.+..+....++
T Consensus 241 -------~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 241 -------YLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred -------HHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999999997 666666666555544433
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=1.8e-18 Score=190.34 Aligned_cols=245 Identities=11% Similarity=-0.000 Sum_probs=188.7
Q ss_pred chhhhHhh---cCCCCHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 246 EFPQCISS---LNKLDPEELKFMGNEAYNK---------ARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEAL 313 (713)
Q Consensus 246 ~a~~~~~~---~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 313 (713)
+|..++++ ++|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|++++|+
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~ 358 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS 358 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 45555555 5666777788888776643 44899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 005125 314 VECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQN 393 (713)
Q Consensus 314 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 393 (713)
..|+++++++|+++.+++.+|.++...|++++|+.+|+++++ ++|.+.. .....+..+...|++++|+..+++
T Consensus 359 ~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~-l~P~~~~------~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 359 LLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK-LDPTRAA------AGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCChh------hHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999752 223344456668999999999999
Q ss_pred HHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 394 VISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDA 473 (713)
Q Consensus 394 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 473 (713)
++...|.+.+..+..+|.+|...|++++|...+.++....|. ...++..++..|...|+ +|...+++.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~--~a~~~l~~l 499 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT----------GLIAVNLLYAEYCQNSE--RALPTIREF 499 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch----------hHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence 998875444678888899999999999999999887766664 23356667777777774 676666665
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Q 005125 474 AQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522 (713)
Q Consensus 474 l~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 522 (713)
++.......... ....++.-.|+-+.|... +++.+.
T Consensus 500 l~~~~~~~~~~~------------~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 500 LESEQRIDNNPG------------LLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHhhHhhcCch------------HHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 543222111111 245555666666666665 555543
No 48
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.8e-18 Score=167.19 Aligned_cols=280 Identities=14% Similarity=0.073 Sum_probs=254.1
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.-|.+...+..+|.+++..|++++|+..|+++.-++|......-..|..+...|+++.-...-...+.++.....-|+--
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 77999999999999999999999999999999999999999999999999999999999999999999988888889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
+.+++..++++.|+.+-+++++ .+|.+ ...++.++..+..+++.++|+-.|+.+..+.|-.. +.|..+-.+|
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~-~~~r~------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL-~~Y~GL~hsY 378 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCID-SEPRN------HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL-EIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhc-cCccc------chHHHhccHHHHhccchHHHHHHHHHHHhcchhhH-HHHHHHHHHH
Confidence 9999999999999999999999 99988 47889999999999999999999999999998875 8899999999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRA-QVYIA-AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg-~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 491 (713)
+..|++.||...-+.++...|. ++..+..+| .++.. ----++|.+++++++++.|....+..
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~----------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~------ 442 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQN----------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN------ 442 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhc----------chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH------
Confidence 9999999999999988877664 455666665 44433 23358999999999999999988877
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 492 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.++.++...|.+.+++..+++++...| +...+..||.++...+.+.+|..+|..|+.++|++..+.
T Consensus 443 ------~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 443 ------LIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred ------HHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 589999999999999999999999988 567899999999999999999999999999999985543
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=8.3e-18 Score=165.04 Aligned_cols=205 Identities=17% Similarity=0.125 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+..++.+|..++..|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcc
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQ 417 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g 417 (713)
...|++++|+..|++++. ..+..
T Consensus 110 ~~~g~~~~A~~~~~~~~~-~~~~~-------------------------------------------------------- 132 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIE-DPLYP-------------------------------------------------------- 132 (234)
T ss_pred HHcccHHHHHHHHHHHHh-ccccc--------------------------------------------------------
Confidence 888888888888888766 21100
Q ss_pred CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 005125 418 RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASAR 497 (713)
Q Consensus 418 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 497 (713)
.....+..+|.++...|++++|...|++++..+|++...+.
T Consensus 133 ---------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------ 173 (234)
T TIGR02521 133 ---------------------------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL------------ 173 (234)
T ss_pred ---------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH------------
Confidence 11224455667777777777777777777777777666555
Q ss_pred HHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 498 LRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558 (713)
Q Consensus 498 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 558 (713)
.+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 4677777777777777777777777666677777777777777777777777666655443
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=5.2e-17 Score=171.20 Aligned_cols=284 Identities=13% Similarity=0.102 Sum_probs=218.0
Q ss_pred chhhhHhh--cCCCCHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 246 EFPQCISS--LNKLDPEELKFM-GNEAYNKARFEDALALYDRAIAINSSKATYR-SNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 246 ~a~~~~~~--~~~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
.|.....+ ...+++..++.+ +......|+++.|..+|.++.+.+|+...+. ...+.++...|++++|+..++++++
T Consensus 102 ~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~ 181 (398)
T PRK10747 102 QVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLE 181 (398)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555555 333445555555 5555999999999999999999999985443 3458999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHH--HHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH--KHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
.+|+++.++..++.+|...|++++|++.+.+..+ ..+.+......+. .+...........+.+...+.++..-...|
T Consensus 182 ~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k-~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 182 VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK-AHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 9999999999999999999999999999998887 5554433222211 222222222222333333333333333344
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
++ +.+...++..+...|+.++|...++++++..++ .......+. ...++++++++.+++.++.+|+
T Consensus 261 ~~-~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-----------~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 261 HQ-VALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-----------ERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------HHHHHHHhh--ccCCChHHHHHHHHHHHhhCCC
Confidence 45 478888999999999999999999999985443 222222333 2459999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 480 NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
++..+. .+|.++...++|++|.++|+++++..|++ ..+..++.++.++|+.++|..+|++++.+.
T Consensus 327 ~~~l~l------------~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 327 TPLLWS------------TLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999887 59999999999999999999999999965 456689999999999999999999998764
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.4e-17 Score=160.92 Aligned_cols=191 Identities=18% Similarity=0.126 Sum_probs=119.5
Q ss_pred HHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHH
Q 005125 376 NEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQ 455 (713)
Q Consensus 376 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~ 455 (713)
......|++++|.+.|+.++..+.... ++++++|..+..+|++++|+++|-+.-.+-. .++.+++.++.
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~-ealfniglt~e~~~~ldeald~f~klh~il~----------nn~evl~qian 566 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAILL----------NNAEVLVQIAN 566 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHHHH----------hhHHHHHHHHH
Confidence 333445777777777777777665554 6777777777777777777777766543322 24567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005125 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535 (713)
Q Consensus 456 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 535 (713)
+|..+.+..+|+++|.++..+-|+++.++. .+|.+|-+.|+-.+|..++-.....-|-+.++.-.||.
T Consensus 567 iye~led~aqaie~~~q~~slip~dp~ils------------kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 567 IYELLEDPAQAIELLMQANSLIPNDPAILS------------KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred HHHHhhCHHHHHHHHHHhcccCCCCHHHHH------------HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 777777777777777777777777777766 45556655666555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRAL 589 (713)
Q Consensus 536 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l 589 (713)
.|....-+++|+.+|++|--+.|+-..-.+ .+|...|+..-+..|.+.+....|
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 555555555555555555555555332211 555555555555555555554444
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=9.3e-20 Score=183.77 Aligned_cols=259 Identities=22% Similarity=0.209 Sum_probs=114.5
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHH
Q 005125 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIR-I-DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
+..|. . ....+|.+++..|++++|++.+.+.+. . .|++...|..+|.+...+++++.|+..|++++. .++....
T Consensus 4 ~~~~~-~-~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-~~~~~~~- 79 (280)
T PF13429_consen 4 EFGPS-E-EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-SDKANPQ- 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-c-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc-
Confidence 34455 2 334679999999999999999976654 4 488999999999999999999999999999999 7776532
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
.+...+.. ...+++++|+..++++++..++ +..+.....++...++++++...++++....+ ..
T Consensus 80 -----~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------~~ 143 (280)
T PF13429_consen 80 -----DYERLIQL-LQDGDPEEALKLAEKAYERDGD--PRYLLSALQLYYRLGDYDEAEELLEKLEELPA--------AP 143 (280)
T ss_dssp ----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------
T ss_pred -----cccccccc-cccccccccccccccccccccc--cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------CC
Confidence 22233333 5789999999999999887654 35666778889999999999999999764332 11
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 524 (713)
.++.+|..+|.++.+.|++++|+.+|+++++.+|++..++. .++.++...|+++++.+.++......|
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~------------~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN------------ALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH------------HHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH------------HHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 46778999999999999999999999999999999999887 689999999999999999998888889
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHH
Q 005125 525 YNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIR 577 (713)
Q Consensus 525 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~ 577 (713)
.++..+..+|.++..+|++++|+.+|++++..+|+++..+. ++|...++++++
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999988766 556655555543
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.81 E-value=4.3e-18 Score=177.67 Aligned_cols=258 Identities=21% Similarity=0.184 Sum_probs=207.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAI--------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--- 322 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 322 (713)
..|.-..+...+|..|..+|+|++|+..++++++. .|.-...+..+|.+|..++++.+|+..|++|+.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 55666678888999999999999999999999998 5655667777999999999999999999999987
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHc
Q 005125 323 -----DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF 397 (713)
Q Consensus 323 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 397 (713)
+|..+.++.+||.+|...|++++|..++++|++ +... .+..
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-I~~~---------------------------------~~~~ 319 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-IYEK---------------------------------LLGA 319 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-HHHH---------------------------------hhcc
Confidence 455578899999999999999999999999998 3221 1112
Q ss_pred CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 398 GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 398 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
.+......+..++.++..++++++|+.+|++++++..+..... ....+..+.++|.+|..+|++++|.+.|++|+.+.
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~--~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED--NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2223346777889999999999999999999887654221110 01246688999999999999999999999999874
Q ss_pred CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-------CCCCHHHHHHHHHHHHHcCCHHH
Q 005125 478 PN-----NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH-------EAYNSVLLCNRAACRSKLGQYEK 545 (713)
Q Consensus 478 p~-----~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~ 545 (713)
.. +...- ..+.++|..+.+.+++.+|...|.+++.+ .|+....|.|||.+|..+|++++
T Consensus 398 ~~~~~~~~~~~~---------~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~ 468 (508)
T KOG1840|consen 398 RELLGKKDYGVG---------KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEA 468 (508)
T ss_pred HhcccCcChhhh---------HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHH
Confidence 21 11111 12337999999999999999999998865 34556789999999999999999
Q ss_pred HHHHHHHHHHh
Q 005125 546 AVEDCTAALIV 556 (713)
Q Consensus 546 A~~~~~~al~~ 556 (713)
|+++.++++..
T Consensus 469 a~~~~~~~~~~ 479 (508)
T KOG1840|consen 469 AEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHH
Confidence 99999998854
No 54
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=1.8e-16 Score=161.66 Aligned_cols=308 Identities=15% Similarity=0.067 Sum_probs=278.6
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
+.-..|..-+..+...+.++-|+..|..+|+.+|.....|...+..-..-|..++-..++++++...|.....|...+..
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake 593 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE 593 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 33457888889999999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL 416 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 416 (713)
+...|+...|...+.++++ ..|++. ..++...........++.|...+.++....|.. .+|+.-+.+...+
T Consensus 594 ~w~agdv~~ar~il~~af~-~~pnse------eiwlaavKle~en~e~eraR~llakar~~sgTe--Rv~mKs~~~er~l 664 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFE-ANPNSE------EIWLAAVKLEFENDELERARDLLAKARSISGTE--RVWMKSANLERYL 664 (913)
T ss_pred HHhcCCcHHHHHHHHHHHH-hCCCcH------HHHHHHHHHhhccccHHHHHHHHHHHhccCCcc--hhhHHHhHHHHHh
Confidence 9999999999999999999 999874 556667777788899999999999999988775 7888888899999
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASA 496 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 496 (713)
+..++|+.+++++++..|+... +|..+|.++..+++.+.|.+.|...++..|.....|.
T Consensus 665 d~~eeA~rllEe~lk~fp~f~K----------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl----------- 723 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHK----------LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL----------- 723 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHH----------HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH-----------
Confidence 9999999999999999997654 7889999999999999999999999999999999998
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----------
Q 005125 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----------- 565 (713)
Q Consensus 497 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----------- 565 (713)
.++.+-.+.|+.-.|...++++.-.+|.++..|...-..-.+.|+.+.|.....+||+-.|++...|.
T Consensus 724 -lLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 724 -LLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred -HHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 48888999999999999999999999999999999999999999999999999999999999876665
Q ss_pred -------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 566 -------------------------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQ 595 (713)
Q Consensus 566 -------------------------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 595 (713)
++|.+.|.++++.+|++.+++-.+++-..+
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELR 863 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHH
Confidence 788999999999999999888777665433
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=2.9e-16 Score=160.16 Aligned_cols=307 Identities=16% Similarity=0.081 Sum_probs=275.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|..-..|...+..-...|..++-..++++++...|.....|...+..++..|+...|...+.++++.+|++.+.|+.-
T Consensus 545 vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa 624 (913)
T KOG0495|consen 545 VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA 624 (913)
T ss_pred hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 56777788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
-.+.....+++.|...|.++.. ..|.. ..++..+.....++..++|+..++.+++..|+.. .+|..+|+++
T Consensus 625 vKle~en~e~eraR~llakar~-~sgTe-------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~-Kl~lmlGQi~ 695 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARS-ISGTE-------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFH-KLWLMLGQIE 695 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhc-cCCcc-------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH-HHHHHHhHHH
Confidence 9999999999999999999988 77775 4577777788889999999999999999999995 8999999999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
..+++.+.|...|...++..|. .+-+|..++.+-.+.|..-.|...++++.-.+|++...|.
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~----------~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwl-------- 757 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPN----------SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWL-------- 757 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCC----------CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHH--------
Confidence 9999999999999999999995 4558899999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCC------------------------------CCHHHHHHHHHHHHHcCCH
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEA------------------------------YNSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------------------~~~~~~~~la~~~~~~g~~ 543 (713)
..-..-.+.|+.+.|.....+|++-.| .++.++...|.++....++
T Consensus 758 ----e~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 758 ----ESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKI 833 (913)
T ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 466777888999999988888887554 3466778899999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 544 EKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFE 591 (713)
Q Consensus 544 ~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~ 591 (713)
+.|.+.|.+++..+|++.++|. +.-.+.|.+.....|.+.+.+....+
T Consensus 834 ~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 834 EKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999999888776 56678889999999999887776543
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.80 E-value=5.8e-17 Score=169.04 Aligned_cols=281 Identities=19% Similarity=0.181 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Q 005125 258 DPEELKFMGNEAYNK-----------ARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRID-PC 325 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~ 325 (713)
.+..++.+|.+|-.+ ....+++..++++++.+|.|+.+.++++.-|..+++.+.|+.+.+++++++ .+
T Consensus 432 ~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~ 511 (799)
T KOG4162|consen 432 KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGD 511 (799)
T ss_pred hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc
Confidence 344556666655432 224556667777777777777777777777777777777777777777773 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHH--------------HHHHHHH----------------HH
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE--------------ALHKHLT----------------KC 375 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~--------------~~~~~~~----------------~~ 375 (713)
++.+|..+|.++...+++.+|+.....++. -.|+|..... .+..... .+
T Consensus 512 ~~~~whLLALvlSa~kr~~~Al~vvd~al~-E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g 590 (799)
T KOG4162|consen 512 SAKAWHLLALVLSAQKRLKEALDVVDAALE-EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEG 590 (799)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 567777777777777777777777777766 4444211000 0000000 00
Q ss_pred H-------HHHHhhcHHHHHHHHHHHHHc---------------------CCCCh----HHHHHHHHHHHHHccCHHHHH
Q 005125 376 N-------EARELKRWNDLLKETQNVISF---------------------GADSA----PQVYALQAEALLRLQRHQEAH 423 (713)
Q Consensus 376 ~-------~~~~~~~~~~A~~~~~~al~~---------------------~p~~~----~~~~~~la~~~~~~g~~~~A~ 423 (713)
. .....++..+|+..+..+... .|+.. ...|...+..+...+..++|.
T Consensus 591 ~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~ 670 (799)
T KOG4162|consen 591 KLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEAR 670 (799)
T ss_pred hhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 0 000011112222222222110 01100 134555666666777777777
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
-++.++-.+.|- .+..|+..|.++...|++++|.+.|..|+.++|++..... .+|.++
T Consensus 671 ~CL~Ea~~~~~l----------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~------------Ala~~l 728 (799)
T KOG4162|consen 671 SCLLEASKIDPL----------SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMT------------ALAELL 728 (799)
T ss_pred HHHHHHHhcchh----------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHH------------HHHHHH
Confidence 777777666652 4556677777777777777777777777777777776665 567777
Q ss_pred HHcccHHHHHH--HHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 504 FKASKYKEACY--AYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 504 ~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
...|+-.-|.. .+..+++++|.++++|+.+|.++.++|+.++|.++|..|+++++.+|
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 77776666665 77777777777777777777777777777777777777777766554
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=2.5e-16 Score=166.11 Aligned_cols=287 Identities=12% Similarity=0.043 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNK-SAALIGLGRQIEALVECKEAIRIDPCYHRA-HHRLAMLY 337 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~ 337 (713)
...+..|...+..|+|++|.+...++-+..+. +..++.+ +.+....|+++.|..+++++.+.+|++..+ ....+.++
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34678888888999999999888876665433 4444444 666699999999999999999999998543 34559999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH----
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL---- 413 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~---- 413 (713)
...|++++|+..++++.+ ..|++. ......+..+...|+|++|+..+.+..+..+.+....-.....++
T Consensus 164 l~~g~~~~Al~~l~~~~~-~~P~~~------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 164 LARNENHAARHGVDKLLE-VAPRHP------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHCCCHHHHHHHHHHHHh-cCCCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999996 455666788889999999999999998887665432221211222
Q ss_pred ---HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 414 ---LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 414 ---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
....+-+....+++......| .++.+...++..+...|+.++|...++++++. +.++....
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~----------~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~----- 300 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTR----------HQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVL----- 300 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHh----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHH-----
Confidence 222233334444444333222 46778999999999999999999999999995 44554332
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHH----
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK-ARL---- 565 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~---- 565 (713)
..+. ...++.+++++.+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++.. .++
T Consensus 301 -------l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~ 371 (398)
T PRK10747 301 -------LIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL 371 (398)
T ss_pred -------HHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1233 34599999999999999999999999999999999999999999999999999999887 333
Q ss_pred ------HHHHHHHHHHHHhC
Q 005125 566 ------EAAIQDYEMLIREI 579 (713)
Q Consensus 566 ------~~A~~~~~~al~~~ 579 (713)
++|.++|++++.+.
T Consensus 372 ~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 372 DRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHcCCHHHHHHHHHHHHhhh
Confidence 88899999988764
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=8.2e-17 Score=157.22 Aligned_cols=274 Identities=15% Similarity=0.094 Sum_probs=240.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSK-ATYRSNKSAALIGL--GRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
-...+..++++|+++.|++.+.-.-..+... ..+-.++..+++.+ .++.+|..+...++.++..++.++.+.|.+-+
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 3456778899999999999987665555443 33556676666664 48999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
..|++++|.+.|+.++. -+... ..++++.+..+..+|++++|+++|-+.-.+--++ .++++.++.+|..+.+
T Consensus 502 ~ngd~dka~~~ykeal~-ndasc------~ealfniglt~e~~~~ldeald~f~klh~il~nn-~evl~qianiye~led 573 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALN-NDASC------TEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-AEVLVQIANIYELLED 573 (840)
T ss_pred ecCcHHHHHHHHHHHHc-CchHH------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhC
Confidence 99999999999999998 55544 4778999999999999999999998876655555 3888999999999999
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
..+|+++|.++..+-|+ ++.++..+|.+|-+.|+-.+|.+++-...+..|.+.+...+
T Consensus 574 ~aqaie~~~q~~slip~----------dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iew------------ 631 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPN----------DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW------------ 631 (840)
T ss_pred HHHHHHHHHHhcccCCC----------CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHH------------
Confidence 99999999999998885 56789999999999999999999999999999999888774
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+|..|....-+++|+.+|++|--+.|+.......++.|+.+.|+|.+|...|+...+..|.+.+.+-
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclk 698 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLK 698 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence 8888999999999999999999999999999999999999999999999999999999999987654
No 59
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.79 E-value=5.5e-16 Score=176.63 Aligned_cols=341 Identities=10% Similarity=-0.010 Sum_probs=245.3
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDR 284 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 284 (713)
+.|...+.......-.++.. ....+...|.+.| +.|..+++.+...+...|..+...|.+.|++++|+.+|++
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~-----~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~ 214 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQY-----MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFRE 214 (697)
T ss_pred HHHHHHHHHHHHhCCCcchH-----HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHH
Confidence 36777777666543222211 1223456777777 7799999996667888999999999999999999999999
Q ss_pred HHHhCC--C----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005125 285 AIAINS--S----------------------------------KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR 328 (713)
Q Consensus 285 al~~~p--~----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 328 (713)
.++..+ + +..++..+...|.+.|++++|...|++. .+.+..
T Consensus 215 M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~v 291 (697)
T PLN03081 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTV 291 (697)
T ss_pred HHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChh
Confidence 876432 1 2234566778899999999999999876 345788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhh-hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSL-ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA 407 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 407 (713)
+|..+...|.+.|++++|++.|++.... +.|+. ..+......+...|++++|.+.+..+++.+......++.
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~-------~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ-------FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 9999999999999999999999998651 34543 356666777888899999999999998887544457888
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI--DPNNKEVIK 485 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 485 (713)
.+...|.+.|++++|...|++..+. +...|..+...|.+.|+.++|++.|++..+. .|+......
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~~-------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 431 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPRK-------------NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCC-------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8899999999999999999987642 3446888888899999999999999887764 444332221
Q ss_pred HHH----------------HHHH-------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 005125 486 GVK----------------MAKA-------MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQ 542 (713)
Q Consensus 486 ~~~----------------~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 542 (713)
.+. .... ...+..+..++.+.|++++|.+.+++. ...| +..+|..+...+...|+
T Consensus 432 ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCC
Confidence 110 0000 123345666777777777777777654 2333 45567777777777777
Q ss_pred HHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHH
Q 005125 543 YEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIR 577 (713)
Q Consensus 543 ~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~ 577 (713)
++.|...+++.+++.|++...+. ++|.+.++...+
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 77777777777777777554333 777777766554
No 60
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.7e-18 Score=164.15 Aligned_cols=274 Identities=17% Similarity=0.189 Sum_probs=228.4
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
+.|+++..|...+..++..|+|++|+-.+++.++++|.....+...+.|+..+++..+|...++ +..++
T Consensus 78 ~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~--------~~~~~--- 146 (486)
T KOG0550|consen 78 MCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK--------SKQAY--- 146 (486)
T ss_pred hCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh--------hhhhh---
Confidence 6677788899999999999999999999999999999999999999999999999999988887 11221
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
....|+..+++.+. .+......+...+..+.++...+++.+|+...-..+++++.+. ++++..|.++
T Consensus 147 --------~~anal~~~~~~~~----s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~-~al~vrg~~~ 213 (486)
T KOG0550|consen 147 --------KAANALPTLEKLAP----SHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA-EALYVRGLCL 213 (486)
T ss_pred --------HHhhhhhhhhcccc----cccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh-HHHHhccccc
Confidence 12233344444333 2222223345567778888889999999999999999998886 7777889999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhh--hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKL--FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 491 (713)
...++.+.|+..|++++.++|++...- .........+...|.-.++.|++.+|.++|..+|.++|++.....
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na------ 287 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA------ 287 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH------
Confidence 999999999999999999999875532 222344667888899999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 492 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
..|.+++.+..++|+..+|+..++.++.++|....++...|.|+..+++|++|+++|+++++...+
T Consensus 288 --klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 288 --KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred --HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 235589999999999999999999999999999999999999999999999999999999998776
No 61
>PLN02789 farnesyltranstransferase
Probab=99.78 E-value=7e-17 Score=162.05 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-RQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
..+++-.+-.++...+++++|+..+.++|+++|.+..+|..++.++..+| ++++++..+++++..+|++..+|+..+.+
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~ 115 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence 34456555566778899999999999999999999999999999999998 68999999999999999999999999999
Q ss_pred HHHcCCH--HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 005125 337 YFRLGEA--EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALL 414 (713)
Q Consensus 337 ~~~~g~~--~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 414 (713)
+..+|+. ++++.++.++++ .+|.+. .+|..++.++.
T Consensus 116 l~~l~~~~~~~el~~~~kal~-~dpkNy-----------------------------------------~AW~~R~w~l~ 153 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILS-LDAKNY-----------------------------------------HAWSHRQWVLR 153 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHH-hCcccH-----------------------------------------HHHHHHHHHHH
Confidence 9988874 678888889988 888874 56666666666
Q ss_pred HccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc---CC----HHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA---GR----FEDAVKTAQDAAQIDPNNKEVIKGV 487 (713)
Q Consensus 415 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~----~~~A~~~~~~al~~~p~~~~~~~~~ 487 (713)
..|++++|++++.++++.++. +..+|+.++.++... |. .++++.+..+++.++|++..+|.
T Consensus 154 ~l~~~~eeL~~~~~~I~~d~~----------N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~-- 221 (320)
T PLN02789 154 TLGGWEDELEYCHQLLEEDVR----------NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWR-- 221 (320)
T ss_pred HhhhHHHHHHHHHHHHHHCCC----------chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHH--
Confidence 666666666666666666663 334566666666554 22 35788999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005125 488 KMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL 540 (713)
Q Consensus 488 ~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 540 (713)
.++.++.. .++..+|+..+.+++...|..+.++..|+.+|...
T Consensus 222 ----------Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 222 ----------YLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ----------HHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 46666666 45678899999999999999999999999999853
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=3.9e-16 Score=146.95 Aligned_cols=268 Identities=16% Similarity=0.086 Sum_probs=186.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 005125 300 SAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379 (713)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~ 379 (713)
|.-+.-..+.++|++.|..+++.+|...+++..||.+|...|+.+.|+...+..+. .|+.. ......+...++..|+
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~--spdlT-~~qr~lAl~qL~~Dym 118 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE--SPDLT-FEQRLLALQQLGRDYM 118 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCCc-hHHHHHHHHHHHHHHH
Confidence 44444445555566666666555555555666666666666666666555444332 23221 2233344555555555
Q ss_pred HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH
Q 005125 380 ELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA 459 (713)
Q Consensus 380 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 459 (713)
..|-++.|...|....+. |+....+.-.+..+|....+|++|++.-++..++.++.... ..+..++.++..+..
T Consensus 119 ~aGl~DRAE~~f~~L~de-~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~-----eIAqfyCELAq~~~~ 192 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDE-GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV-----EIAQFYCELAQQALA 192 (389)
T ss_pred HhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh-----HHHHHHHHHHHHHhh
Confidence 566666665555554432 33334666777788888888888888888777777665443 346678888999989
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC-HHHHHHHHHHHH
Q 005125 460 AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN-SVLLCNRAACRS 538 (713)
Q Consensus 460 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 538 (713)
..+.+.|+..+.+|++.+|+...+-. .+|.++...|+|+.|++.++.+++.+|+. +.+...|..||.
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi------------~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASI------------ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA 260 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhh------------hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 99999999999999999999887776 58999999999999999999999999876 677888999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHH-----------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 539 KLGQYEKAVEDCTAALIVMPSYSKARL-----------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 539 ~~g~~~~A~~~~~~al~~~p~~~~a~~-----------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
++|+.++.+..+.++.+..++...... +.|.....+-+...|+-......
T Consensus 261 ~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl 321 (389)
T COG2956 261 QLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRL 321 (389)
T ss_pred HhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHH
Confidence 999999999999999998877543332 66777777777777775544433
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=9.4e-16 Score=160.14 Aligned_cols=353 Identities=17% Similarity=0.089 Sum_probs=248.7
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cC--CCCHHHHHHHHHHHH-HhcCHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LN--KLDPEELKFMGNEAY-NKARFEDA 278 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~--~~~~~~~~~lg~~~~-~~g~~~~A 278 (713)
+.+.++|++++-.. ....+ ..+.++.++...+ -.|.-+++. .. |.++..+...+..+. ..+.++++
T Consensus 340 ~~lae~fE~~~~~~--~~~~e----~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 340 EVLAEQFEQALPFS--FGEHE----RWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHhHhh--hhhHH----HHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 36667777766433 11122 2234566665555 235555554 33 556666655555444 46788888
Q ss_pred HHHHHHHHHhCC-----CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005125 279 LALYDRAIAINS-----SKATYRSNKSAALIGL-----------GRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE 342 (713)
Q Consensus 279 ~~~~~~al~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 342 (713)
+.+..+++...- -.+..+..+|.+|..+ ....++++.++++++.+|.++.+.+.++.-|..+++
T Consensus 414 ldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~ 493 (799)
T KOG4162|consen 414 LDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQ 493 (799)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Confidence 888888887321 1245667777777543 235678888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHH
Q 005125 343 AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEA 422 (713)
Q Consensus 343 ~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 422 (713)
.+.|+++.+++++ +.+.+. ...|..++.+....+++.+|+...+.++...+++. ........+-...++.++|
T Consensus 494 l~sAl~~~~eaL~-l~~~~~-----~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~-~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 494 LTSALDYAREALA-LNRGDS-----AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH-VLMDGKIHIELTFNDREEA 566 (799)
T ss_pred HHHHHHHHHHHHH-hcCCcc-----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh-hhchhhhhhhhhcccHHHH
Confidence 8888888888888 755543 35566677777778888888888888887777643 2222222333334444444
Q ss_pred HHHhhccccCChh----------------------------h----HH----------hhhc----cc------------
Q 005125 423 HDSYNKSPKFCLE----------------------------Y----YT----------KLFG----LA------------ 444 (713)
Q Consensus 423 ~~~~~~al~~~~~----------------------------~----~~----------~~~~----~~------------ 444 (713)
+..+...+.+-.+ . .. .-.+ ++
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence 4433322211110 0 00 0000 00
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 445 -GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 445 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
.....|...+..+...+..++|.-++.++-.++|..+..|+ ..|.++...|++.+|.+.|..|+.++
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~------------~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY------------LRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH------------HhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 01346778888999999999999999999999998888887 68999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHH
Q 005125 524 AYNSVLLCNRAACRSKLGQYEKAVE--DCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 524 p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~ 584 (713)
|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|+ ++|.++|+.|+++++.+|-
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999888888 99999999999999999 8999999999999988874
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.75 E-value=3.9e-16 Score=140.73 Aligned_cols=161 Identities=23% Similarity=0.205 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN---N 480 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~ 480 (713)
.+|..++.+|...|+.+.|.+.|++|+.+.|+ +.+++++.|..++.+|++++|...|++|+. +|. .
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~----------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~ 138 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPN----------NGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEP 138 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC----------ccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCc
Confidence 56666666666667777777777777666664 455888899999999999999999999997 444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 481 KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
...+. |+|.+..++|+++.|.++|+++++++|+.+.....++..+++.|++..|..+++......+-.
T Consensus 139 s~t~e------------N~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~ 206 (250)
T COG3063 139 SDTLE------------NLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ 206 (250)
T ss_pred chhhh------------hhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccccc
Confidence 45555 899999999999999999999999999999999999999999999999999999998877755
Q ss_pred hHHHH-----------HHHHHHHH-HHHHhCCCCHHHHH
Q 005125 561 SKARL-----------EAAIQDYE-MLIREIPGNEEVGR 587 (713)
Q Consensus 561 ~~a~~-----------~~A~~~~~-~al~~~p~~~~~~~ 587 (713)
...++ ..+...|+ +.-++.|..++...
T Consensus 207 A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 207 AESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 54444 23333343 34456676665543
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=6.2e-15 Score=138.94 Aligned_cols=206 Identities=11% Similarity=0.066 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSK-----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
+.+.+|+.+...|..+.||.+-+..++ .|+. ..++..+|.=|...|-++.|...|....+...--..++..|..
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~ 149 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLN 149 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 455666666666666666665554433 2332 2355566666666666666666666655544444556666666
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
+|....++++|++.-++... +.++.. .......+..++..+....+.+.|...+.++++.+|... .+-..+|.++..
T Consensus 150 IYQ~treW~KAId~A~~L~k-~~~q~~-~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv-RAsi~lG~v~~~ 226 (389)
T COG2956 150 IYQATREWEKAIDVAERLVK-LGGQTY-RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV-RASIILGRVELA 226 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHH-cCCccc-hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce-ehhhhhhHHHHh
Confidence 66666666666666666555 554432 122222333333333334444444444444444444432 344444555555
Q ss_pred ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 416 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
.|+|+.|++.++.+++.+|++. +.+.-.+..+|..+|+.++.+..+.++.+..+.
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~yl---------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPEYL---------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred ccchHHHHHHHHHHHHhChHHH---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 5555555555555544444432 223344444455555555555555544444443
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1.1e-16 Score=162.37 Aligned_cols=227 Identities=15% Similarity=0.158 Sum_probs=177.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 005125 297 SNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCN 376 (713)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 376 (713)
+..|..+++.|+..+|+-+|+.++..+|.+.++|..||.+....++-..|+..++++++ ++|++.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~-LdP~Nl-------------- 353 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE-LDPTNL-------------- 353 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh-cCCccH--------------
Confidence 57899999999999999999999999999999999999999999999999999999999 999984
Q ss_pred HHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcc-cCcHHHHHHHHH
Q 005125 377 EARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL-AGGAYLLIVRAQ 455 (713)
Q Consensus 377 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~lg~ 455 (713)
.++..||..|...|.-.+|+.++.+-+...|.+....... ..... ...
T Consensus 354 ---------------------------eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~ 402 (579)
T KOG1125|consen 354 ---------------------------EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTK 402 (579)
T ss_pred ---------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCc
Confidence 4455555555555555555555555544443321111000 00000 000
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHH
Q 005125 456 VYIAAGRFEDAVKTAQDAAQIDP--NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNR 533 (713)
Q Consensus 456 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 533 (713)
-......+..-.+.|-.+....| .++++.. .||.+|...|+|++|+.+|+.||...|++...|..|
T Consensus 403 s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~------------~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 403 SFLDSSHLAHIQELFLEAARQLPTKIDPDVQS------------GLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCChhHHh------------hhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 00001122334556666777777 6788887 599999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCC
Q 005125 534 AACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPG 581 (713)
Q Consensus 534 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~ 581 (713)
|..+..-.+.++|+..|.+|+++.|.+..+++ .+|+.+|-.||.+.+.
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999988 8999999999998776
No 67
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.72 E-value=4.4e-14 Score=162.79 Aligned_cols=291 Identities=10% Similarity=0.046 Sum_probs=168.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSS-KATYRSNKSAALIGLGRQIEALVECKEAIRI--DPCYHRAHHRLA 334 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la 334 (713)
+...|..+-..|.+.|++++|..+|+++.+.... +...|..+...|.+.|++++|+..|+++... .|+ ...|..+.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI 549 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALI 549 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence 3344444444555555555555555554443221 3444555555555555555555555554432 222 34455555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhh---hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 005125 335 MLYFRLGEAEKAVSHYKKSSSL---ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE 411 (713)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~al~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~ 411 (713)
..|.+.|++++|.+.|.++... +.|+. ..+..+...+.+.|++++|.+.|+.+.+.+.......|..+..
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-------vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDH-------ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 5555555555555555554320 12321 2333344455556666666666666666554333456666666
Q ss_pred HHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP-NNKEVIKGVKMA 490 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~ 490 (713)
.|.+.|++++|+.+|+++....- ..+...|..+...|.+.|++++|.+.++++.+... -+...+.
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv---------~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn----- 688 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGV---------KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS----- 688 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-----
Confidence 66666666666666666544211 11344556666666666777777777666665432 1233333
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHH-
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEH--EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV--MPSYSKARL- 565 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~- 565 (713)
.+...|.+.|++++|+..|++..+. .| +...|..+...|.+.|++++|++.|+++... .|+......
T Consensus 689 -------sLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 689 -------SLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred -------HHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6888889999999999999887653 44 5678888999999999999999999987654 455322111
Q ss_pred ----------HHHHHHHHHHHHh
Q 005125 566 ----------EAAIQDYEMLIRE 578 (713)
Q Consensus 566 ----------~~A~~~~~~al~~ 578 (713)
++|.+.|.++++.
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc
Confidence 7888888888764
No 68
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.72 E-value=6.7e-14 Score=161.31 Aligned_cols=315 Identities=11% Similarity=0.025 Sum_probs=250.4
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhhcC----CCCHHHHHHHHHHHHHhcCHHHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISSLN----KLDPEELKFMGNEAYNKARFEDAL 279 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~ 279 (713)
.++|...|+++.+....|+... +. .+-..|.+.| ++|..+++.+. ..+...|..+...|.+.|++++|+
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~t----yn-sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKL----YT-TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHH----HH-HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 4567777777766544332111 22 2344455555 66888887722 457889999999999999999999
Q ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 280 ALYDRAIAI--NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI----DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353 (713)
Q Consensus 280 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 353 (713)
.+|.+..+. .| +...|..+...|.+.|++++|.+.|+++... .|+ ...|..+..+|.+.|++++|.+.|+.+
T Consensus 528 ~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 528 GAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999775 34 3678999999999999999999999999763 454 678888999999999999999999999
Q ss_pred hhhhcc-ccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccC
Q 005125 354 SSLANQ-KDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF 432 (713)
Q Consensus 354 l~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (713)
.+ .+. .+ ...+..+...+.+.|++++|+..|......+-......|..+...|.+.|++++|.++++++.+.
T Consensus 606 ~e-~gi~p~------~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 606 HE-YNIKGT------PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HH-cCCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 88 442 22 24566677788899999999999999988743333478889999999999999999999998764
Q ss_pred ChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Q 005125 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI--DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYK 510 (713)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 510 (713)
... .+...+..+...|.+.|++++|++.|++.... .|+ ...|. .+...|.+.|+++
T Consensus 679 G~~---------pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN------------~LI~gy~k~G~~e 736 (1060)
T PLN03218 679 GIK---------LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMN------------ALITALCEGNQLP 736 (1060)
T ss_pred CCC---------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHH------------HHHHHHHHCCCHH
Confidence 321 35668899999999999999999999998764 343 44455 6889999999999
Q ss_pred HHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 511 EACYAYSEGLEH--EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 511 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
+|++.|++.... .| +...|..+...+.+.|++++|...+.++++..
T Consensus 737 eAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 737 KALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999988754 45 56778888899999999999999999998854
No 69
>PLN02789 farnesyltranstransferase
Probab=99.71 E-value=1.1e-15 Score=153.29 Aligned_cols=212 Identities=14% Similarity=0.085 Sum_probs=180.5
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 005125 273 ARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG-EAEKAVSHYK 351 (713)
Q Consensus 273 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~ 351 (713)
++|.+|..+|+.++. ..+++++|+..+.++|.++|++..+|...+.++..+| ++++++..+.
T Consensus 34 ~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 456666666665554 4577889999999999999999999999999999998 6799999999
Q ss_pred HHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH--HHHHHHhhcc
Q 005125 352 KSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH--QEAHDSYNKS 429 (713)
Q Consensus 352 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a 429 (713)
+++. .+|++. .+|..++.++..+|+. ++++.+++++
T Consensus 97 ~~i~-~npkny-----------------------------------------qaW~~R~~~l~~l~~~~~~~el~~~~ka 134 (320)
T PLN02789 97 DVAE-DNPKNY-----------------------------------------QIWHHRRWLAEKLGPDAANKELEFTRKI 134 (320)
T ss_pred HHHH-HCCcch-----------------------------------------HHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence 9999 888873 6788888888888864 7889999999
Q ss_pred ccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---
Q 005125 430 PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA--- 506 (713)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~--- 506 (713)
+..+|+ +..+|..++.++...|++++|++++.++|+.+|.+..+|. .++.++...
T Consensus 135 l~~dpk----------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~------------~R~~vl~~~~~l 192 (320)
T PLN02789 135 LSLDAK----------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN------------QRYFVITRSPLL 192 (320)
T ss_pred HHhCcc----------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH------------HHHHHHHhcccc
Confidence 999996 4558999999999999999999999999999999999998 577776655
Q ss_pred ccH----HHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 507 SKY----KEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 507 g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|.+ ++++.+..++|..+|++..+|..++.++.. +++..+|+..+.+++...|.+..+.-
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 333 578999999999999999999999999988 56678899999999998888776543
No 70
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.71 E-value=7.1e-15 Score=167.58 Aligned_cols=290 Identities=11% Similarity=-0.011 Sum_probs=238.7
Q ss_pred hhhhhcCCC--CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Q 005125 236 MGNIVKQPS--GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAIN-SSKATYRSNKSAALIGLGRQIEA 312 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 312 (713)
+...|.+.| ++|..+++.+.+.+..+|..+...|.+.|++++|+.+|++..+.. .-+...+..+..++...|++++|
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 445566666 678889988888899999999999999999999999999987643 22456788889999999999999
Q ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 005125 313 LVECKEAIRID-PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKET 391 (713)
Q Consensus 313 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 391 (713)
.+.+..+++.. +.+..++..|...|.+.|++++|...|++..+ |+ ...|..+...+...|++++|++.|
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d-------~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KN-------LISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CC-------eeeHHHHHHHHHHcCCHHHHHHHH
Confidence 99999998875 45677888999999999999999999998755 22 245677788888999999999999
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 392 QNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQ 471 (713)
Q Consensus 392 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 471 (713)
++....+.......|..+..++...|..++|..+|+.+.+... ...+...|..+..+|.+.|++++|.+.++
T Consensus 415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g--------~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR--------IKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC--------CCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 9988765444347788888999999999999999998864211 11234567888999999999999999987
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 472 DAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCT 551 (713)
Q Consensus 472 ~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 551 (713)
++ ...|+ ...|. .+...+...|+++.|...+++.+++.|++...|..++.+|.+.|++++|.+.++
T Consensus 487 ~~-~~~p~-~~~~~------------~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 487 RA-PFKPT-VNMWA------------ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HC-CCCCC-HHHHH------------HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 64 23333 34454 578888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 005125 552 AALIVM 557 (713)
Q Consensus 552 ~al~~~ 557 (713)
...+..
T Consensus 553 ~m~~~g 558 (697)
T PLN03081 553 TLKRKG 558 (697)
T ss_pred HHHHcC
Confidence 887653
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=2.6e-15 Score=147.29 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=102.4
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID--PNNKEV 483 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 483 (713)
+..+|.++...|++++|+..|++++...|. ...++..+|.++...|++++|+..|++++... +.....
T Consensus 68 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 137 (234)
T TIGR02521 68 YLALALYYQQLGELEKAEDSFRRALTLNPN----------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARS 137 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHH
Confidence 333444444444444444444444444332 22355666777778888888888888887643 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
+. .+|.++...|++++|+..|.+++..+|+++..+..+|.++...|++++|+..++++++..|.+...
T Consensus 138 ~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 205 (234)
T TIGR02521 138 LE------------NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAES 205 (234)
T ss_pred HH------------HHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 43 689999999999999999999999999999999999999999999999999999999998877666
Q ss_pred HH
Q 005125 564 RL 565 (713)
Q Consensus 564 ~~ 565 (713)
+.
T Consensus 206 ~~ 207 (234)
T TIGR02521 206 LW 207 (234)
T ss_pred HH
Confidence 55
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.70 E-value=2e-14 Score=147.42 Aligned_cols=337 Identities=13% Similarity=0.057 Sum_probs=248.9
Q ss_pred HHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 005125 208 KTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALY 282 (713)
Q Consensus 208 ~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 282 (713)
+.+...+.+|...|+ +.+ .++++|..+...| ++|...... .++...-.|+.+|..+....+|++|+.+|
T Consensus 25 kgLK~~~~iL~k~~e--Hge----slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 25 KGLKLIKQILKKFPE--HGE----SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred hHHHHHHHHHHhCCc--cch----hHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 566677777777753 333 5667888888888 556666665 67788889999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc-ccc
Q 005125 283 DRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN-QKD 361 (713)
Q Consensus 283 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-p~~ 361 (713)
+.|+.++|++..+|..++....++++++.....-.+.+++.|..-..|..+|..+...|++..|....+....... +-.
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999888777666221 233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhh
Q 005125 362 IAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLF 441 (713)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 441 (713)
..........+.+..+..+.|.+++|++.+..--..--+.. ......|.++++++++++|+..|...+..+|+...
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl-a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~--- 254 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL-AFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD--- 254 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH-HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH---
Confidence 34455566677777888888888888777665432222221 34445688999999999999999999999997544
Q ss_pred cccCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHH------------------------------------
Q 005125 442 GLAGGAYLLIVRAQVYIAAGRFEDAV-KTAQDAAQIDPNNKEVI------------------------------------ 484 (713)
Q Consensus 442 ~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~------------------------------------ 484 (713)
.+..+-.++.+..+--+++ ..|...-+..|......
T Consensus 255 -------Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~ 327 (700)
T KOG1156|consen 255 -------YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR 327 (700)
T ss_pred -------HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH
Confidence 2233333332222223333 33333322211111000
Q ss_pred HH---------HHHH--------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH
Q 005125 485 KG---------VKMA--------------------------KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL 529 (713)
Q Consensus 485 ~~---------~~~~--------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 529 (713)
.+ +..+ ..+..++.++..+...|+++.|..+.+.|+...|..++.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl 407 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL 407 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence 00 0000 015566778999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 530 LCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 530 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
|...|.++...|++++|...++.+.++|-.+.
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 99999999999999999999999999986543
No 73
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.70 E-value=1.1e-14 Score=155.37 Aligned_cols=331 Identities=15% Similarity=0.035 Sum_probs=266.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY--HRAHH 331 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~ 331 (713)
+++.-+.+|..+|..|..-.+...|..+|++|.++|+.++.++-..+..|....+++.|...+-.+-+..|.. ...|.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 8888899999999999999999999999999999999999999999999999999999999988877777754 45677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE 411 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~ 411 (713)
.+|..|...+++..|+..|+.+++ .+|.+. ..|..++.+|...|++..|++.|.++..++|.+. ...+..+.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR-~dPkD~------n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~-y~~fk~A~ 638 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALR-TDPKDY------NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK-YGRFKEAV 638 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhc-CCchhH------HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH-HHHHHHHH
Confidence 799999999999999999999999 999984 7788899999999999999999999999999986 56666799
Q ss_pred HHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C-CCCHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI-------D-PNNKEV 483 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~-p~~~~~ 483 (713)
+...+|+|.+|+..+...+.....+..... ..++.+...+..+.-.|=+.+|..+++++++. . .++...
T Consensus 639 ~ecd~GkYkeald~l~~ii~~~s~e~~~q~---gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~ 715 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLIIYAFSLERTGQN---GLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQ 715 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999999999988765554433222 34566667777777777666666666665432 1 111111
Q ss_pred HHHHHH------------------------H--------------------------HHHHHHHHHHHHHHH--------
Q 005125 484 IKGVKM------------------------A--------------------------KAMASARLRGNLLFK-------- 505 (713)
Q Consensus 484 ~~~~~~------------------------~--------------------------~~~~~~~~lg~~~~~-------- 505 (713)
|..... . .....|+++|..|++
T Consensus 716 Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 716 WIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred HHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 111000 0 003346788888776
Q ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHH
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYE 573 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~ 573 (713)
+.+-..|+.++.+++++..++...|..||.+ ...|++.-|..+|-+.+...|.....|+ +.|.+.|.
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHH
Confidence 2344589999999999999999999999988 7779999999999999999999998888 88999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHH
Q 005125 574 MLIREIPGNEEVGRALFEAQVQL 596 (713)
Q Consensus 574 ~al~~~p~~~~~~~~l~~~~~~l 596 (713)
++..++|.|...+.+......++
T Consensus 875 ~~qSLdP~nl~~WlG~Ali~eav 897 (1238)
T KOG1127|consen 875 SVQSLDPLNLVQWLGEALIPEAV 897 (1238)
T ss_pred hhhhcCchhhHHHHHHHHhHHHH
Confidence 99999999988766654444443
No 74
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.70 E-value=1.7e-15 Score=161.47 Aligned_cols=330 Identities=12% Similarity=0.026 Sum_probs=227.5
Q ss_pred chhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCC--CCHHHHHHHHHHHHHhcCHHH
Q 005125 205 ATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNK--LDPEELKFMGNEAYNKARFED 277 (713)
Q Consensus 205 ~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~--~~~~~~~~lg~~~~~~g~~~~ 277 (713)
+..+|..+|++|.++||. .+.++ ...+..|.+.. ++|....-. ..| .-.+.|..+|..|...+++..
T Consensus 507 Dm~RA~kCf~KAFeLDat--daeaa----aa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~ 580 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDAT--DAEAA----AASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHG 580 (1238)
T ss_pred HHHHHHHHHHHHhcCCch--hhhhH----HHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhh
Confidence 445777777777777752 12211 11344444444 333333222 111 122456678888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 005125 278 ALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357 (713)
Q Consensus 278 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 357 (713)
|+..|+.+++.+|.+..+|..+|.+|...|++..|++.|.+|..++|.+..+.+-.+.+...+|+|.+|+..+...+. .
T Consensus 581 aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~-~ 659 (1238)
T KOG1127|consen 581 AVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY-A 659 (1238)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-H
Confidence 888889999999998889999999999999999999999999989998888888888888888999999888888776 3
Q ss_pred cccc-HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-------cCCCChHHHHHHHHHHHHHccCHH---------
Q 005125 358 NQKD-IAKAEALHKHLTKCNEARELKRWNDLLKETQNVIS-------FGADSAPQVYALQAEALLRLQRHQ--------- 420 (713)
Q Consensus 358 ~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~~la~~~~~~g~~~--------- 420 (713)
.... .........++..+..+...|-+.+|...++++++ ..-......|..+|.+..-.-+.+
T Consensus 660 ~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l 739 (1238)
T KOG1127|consen 660 FSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYL 739 (1238)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHH
Confidence 3222 12222233344444444445555555555554443 221111233333333322111111
Q ss_pred --------------------HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH--------cCCHHHHHHHHHH
Q 005125 421 --------------------EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA--------AGRFEDAVKTAQD 472 (713)
Q Consensus 421 --------------------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--------~g~~~~A~~~~~~ 472 (713)
-|.+++-..++ ....+..|+++|.-|+. +.+...|+.++.+
T Consensus 740 ~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-----------l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 740 IILSKQLEKTGALKKNDLLFLGYECGIAHLS-----------LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHhhHHHH-----------HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 12222222221 12246678999988876 3344689999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 473 AAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 473 al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
++++..++...|. .+|.+ ...|++.-|..+|-+++...|.....|.|+|.++.+..+++-|...|.+
T Consensus 809 aV~L~ann~~~Wn------------aLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 809 AVSLCANNEGLWN------------ALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHhhccHHHHH------------HHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHh
Confidence 9999999999998 57877 6679999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChHHHH
Q 005125 553 ALIVMPSYSKARL 565 (713)
Q Consensus 553 al~~~p~~~~a~~ 565 (713)
+..++|.+...|+
T Consensus 876 ~qSLdP~nl~~Wl 888 (1238)
T KOG1127|consen 876 VQSLDPLNLVQWL 888 (1238)
T ss_pred hhhcCchhhHHHH
Confidence 9999999998888
No 75
>PLN03077 Protein ECB2; Provisional
Probab=99.68 E-value=2.4e-14 Score=167.26 Aligned_cols=321 Identities=13% Similarity=0.017 Sum_probs=218.6
Q ss_pred hhhcCCC--CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 238 NIVKQPS--GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAI--NSSKATYRSNKSAALIGLGRQIEAL 313 (713)
Q Consensus 238 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~ 313 (713)
..|.+.| ++|..+++.+...+...|..+...|.+.|++++|+.+|++..+. .|+.. .+..+-.++...|++++|.
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGDLDVGV 409 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccchHHHHH
Confidence 3344444 55777777765566777777777777888888888887776553 34432 3333334555566666666
Q ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 005125 314 VECKEAIRIDP-CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQ 392 (713)
Q Consensus 314 ~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 392 (713)
+.++.+++... .+..++..|...|.+.|++++|.+.|++..+ .+. ..|..+...+...|++++|+..|+
T Consensus 410 ~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~---------vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-KDV---------ISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCe---------eeHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666655432 2355667777777777777777777776544 221 234444555556666667766666
Q ss_pred HHHHcC-CC---------------------------------ChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHH
Q 005125 393 NVISFG-AD---------------------------------SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYT 438 (713)
Q Consensus 393 ~al~~~-p~---------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 438 (713)
+.+... |+ ....++..+...|.+.|++++|...|+.. .
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~----- 551 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---E----- 551 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---C-----
Confidence 665432 22 11223344557788889999998888875 2
Q ss_pred hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q 005125 439 KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI--DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAY 516 (713)
Q Consensus 439 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 516 (713)
.+...|..+...|...|+.++|++.|++..+. .|+..... .+-..+.+.|++++|..+|
T Consensus 552 ------~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-------------~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 552 ------KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI-------------SLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred ------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH-------------HHHHHHhhcChHHHHHHHH
Confidence 24568889999999999999999999998874 56554433 3556788999999999999
Q ss_pred HHHhcc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCC
Q 005125 517 SEGLEH---EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPG 581 (713)
Q Consensus 517 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~ 581 (713)
+...+. .| +...|..+..++.+.|++++|.+.+++. .+.|+. ..|. +.+....+++++++|+
T Consensus 613 ~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~-~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 613 HSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP-AVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 998844 34 5678999999999999999999999986 355653 2222 6777888899999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 005125 582 NEEVGRALFEAQVQLKKQ 599 (713)
Q Consensus 582 ~~~~~~~l~~~~~~l~~~ 599 (713)
+......|........+|
T Consensus 690 ~~~~y~ll~n~ya~~g~~ 707 (857)
T PLN03077 690 SVGYYILLCNLYADAGKW 707 (857)
T ss_pred CcchHHHHHHHHHHCCCh
Confidence 988776665544444444
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.68 E-value=5.2e-14 Score=147.75 Aligned_cols=210 Identities=12% Similarity=-0.045 Sum_probs=150.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHH 331 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 331 (713)
+|+.+.++..+|..+...|++++|...+.++.+..|.+ .+..+..+.++...|++++|+..++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 57777888888888888888888888888887776644 445667788888888888888888888888888877766
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhh---hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSL---ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYAL 408 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 408 (713)
. +..+...|++..+.....+++.. ..|.. .......+..+...|++++|+..++++++..|++. .++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~-~~~~~ 153 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY------WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA-WAVHA 153 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-HHHHH
Confidence 5 55555555444444444443321 33333 24455667777788888888888888888888874 66777
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 478 (713)
+|.++...|++++|+.++++++...|.... .....+..+|.++...|++++|+..|++++...|
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSM------LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcc------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 788888888888888888888877653111 1233566788888888888888888888876555
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.67 E-value=7.9e-15 Score=153.41 Aligned_cols=231 Identities=20% Similarity=0.179 Sum_probs=171.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--------DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
+|....+..+++..|...|+|++|+..|++++++ +|.-......+|.+|..++++.+|+..|++|+. +...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~-i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT-IREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHH
Confidence 4555666777888888888888888888888877 555555566688888888888888888888777 2111
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 361 DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
.+-.+......++.+||.+|...|++++|..++++|+.+......
T Consensus 274 ---------------------------------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~-- 318 (508)
T KOG1840|consen 274 ---------------------------------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG-- 318 (508)
T ss_pred ---------------------------------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc--
Confidence 000111112378889999999999999999999999887655111
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP-----NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 515 (713)
...+..+..+.+++.++..++++++|+.+|++++++.- +++.. .....++|.+|+.+|+|++|.+.
T Consensus 319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~---------a~~~~nl~~l~~~~gk~~ea~~~ 389 (508)
T KOG1840|consen 319 ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL---------AKIYANLAELYLKMGKYKEAEEL 389 (508)
T ss_pred cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH---------HHHHHHHHHHHHHhcchhHHHHH
Confidence 11223466788999999999999999999999998632 22111 11233899999999999999999
Q ss_pred HHHHhccC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHH
Q 005125 516 YSEGLEHE--------AYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV----MPSYSKAR 564 (713)
Q Consensus 516 ~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~ 564 (713)
|++|+.+. +.....+.++|..|.+++++.+|...|..++.+ .|+++...
T Consensus 390 ~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 390 YKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 99999763 334678899999999999999999999998875 45554443
No 78
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.67 E-value=1.8e-15 Score=146.38 Aligned_cols=284 Identities=11% Similarity=0.011 Sum_probs=221.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKA----TYRSNKSAALIGLGRQIEALVECKEAIRI------DPCYHRAHH 331 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~ 331 (713)
+-.-|.-+++.|++...+.+|+.|++...++. .+|..+|.+|+.+++|++|+++-..=+.+ .-..+.+--
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 56678889999999999999999999877663 46788999999999999999886543332 223356677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh--------------------cHHHHHHHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELK--------------------RWNDLLKET 391 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~A~~~~ 391 (713)
+||..+..+|.|++|+.++.+-+. +...-.+......++++++.+|...| .++.|.+.|
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd-~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLD-FARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhH-HHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 899999999999999999999888 76666666777788888888887643 345566666
Q ss_pred HHHHHcCCCC-----hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHH
Q 005125 392 QNVISFGADS-----APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466 (713)
Q Consensus 392 ~~al~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 466 (713)
..-+++.... ...+|-++|..|+-+|+|+.|+..-+.-+.+..++.+.. ..-.++.++|.++.-.|+++.|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrA----aeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRA----AERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHH----HHHHhhcccchhhhhhcccHhH
Confidence 6666553221 126788889999999999999999998888777665532 2356889999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHc
Q 005125 467 VKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA------YNSVLLCNRAACRSKL 540 (713)
Q Consensus 467 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~ 540 (713)
+++|++++.+.-. +-.+...+.+.+.+|+.|.-..++++||.++.+-+.+.. ....+++.||..|-.+
T Consensus 255 ~ehYK~tl~LAie------lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 255 IEHYKLTLNLAIE------LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred HHHHHHHHHHHHH------hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999998754211 111122234456899999999999999999999777643 3467899999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 005125 541 GQYEKAVEDCTAALIV 556 (713)
Q Consensus 541 g~~~~A~~~~~~al~~ 556 (713)
|..++|+.+.++.+++
T Consensus 329 g~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999888775
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.66 E-value=4.1e-13 Score=138.04 Aligned_cols=336 Identities=18% Similarity=0.137 Sum_probs=252.1
Q ss_pred CCCCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCH
Q 005125 201 HCPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARF 275 (713)
Q Consensus 201 ~~~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~ 275 (713)
.+....++|..+...++..|+.+ .+ +.+++|.+++... ++|+.++.. +.|+|-..|..++..-.+.+++
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S-----~v-CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKS-----HV-CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hcccchHHHHHHHHHHhccCccc-----ch-hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 45667899999999999999742 22 5677999998888 679999987 8999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 276 EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRID---PCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352 (713)
Q Consensus 276 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 352 (713)
+-....-.+.++..|..-..|...|.++...|++..|....+...+.. |.....-......|..+-..+... ++.
T Consensus 126 ~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~--~q~ 203 (700)
T KOG1156|consen 126 EGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS--LQK 203 (700)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc--HHH
Confidence 999999999999999999999999999999999999999988877765 443334444444444433333332 666
Q ss_pred HhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHH-HHhhcccc
Q 005125 353 SSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAH-DSYNKSPK 431 (713)
Q Consensus 353 al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 431 (713)
+++.+..........+......+..+..++++++|+..|...+..+|++. ..|..+-.++....+--+++ ..|...-+
T Consensus 204 ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~-~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 204 ALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL-DYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH-HHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 66634444445566677778889999999999999999999999999986 44444444443222222222 22222100
Q ss_pred C------------------------------------------------Chh---hHHhh-------------h------
Q 005125 432 F------------------------------------------------CLE---YYTKL-------------F------ 441 (713)
Q Consensus 432 ~------------------------------------------------~~~---~~~~~-------------~------ 441 (713)
. .|. ..... +
T Consensus 283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence 0 000 00000 0
Q ss_pred ---cccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 442 ---GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 442 ---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
.+..-...++.++.-+...|+++.|..+++.|+...|.-.+.+. ..|.++...|++++|..++.+
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~------------~KaRI~kH~G~l~eAa~~l~e 430 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYL------------VKARIFKHAGLLDEAAAWLDE 430 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHH------------HHHHHHHhcCChHHHHHHHHH
Confidence 00112456677888999999999999999999999999988887 589999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 519 GLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 519 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
+-++|-.+...-..-|.-..+.++.++|.+.+.+.-+..
T Consensus 431 a~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 431 AQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 999987665555567888899999999999888766554
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.65 E-value=2.6e-14 Score=140.25 Aligned_cols=193 Identities=14% Similarity=0.084 Sum_probs=158.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA---TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR-- 328 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 328 (713)
..+..++.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4467788999999999999999999999999999999875 58899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 329 -AHHRLAMLYFRL--------GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 329 -~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
+++.+|.++... |++++|+..|++++. ..|++......+.. .... ...+
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~a~~~---~~~~-------~~~~----------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR-RYPNSEYAPDAKKR---MDYL-------RNRL----------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH-HCCCChhHHHHHHH---HHHH-------HHHH-----------
Confidence 799999999986 889999999999999 99987533221111 0100 0000
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 478 (713)
......+|.+|...|++++|+..|++++...|+.. ..+.+++.+|.++...|++++|..+++......|
T Consensus 166 ---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 166 ---AGKELYVARFYLKRGAYVAAINRFETVVENYPDTP-------ATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc-------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12334678999999999999999999998877531 2467899999999999999999999888766554
No 81
>PLN03077 Protein ECB2; Provisional
Probab=99.65 E-value=3.3e-13 Score=157.74 Aligned_cols=293 Identities=12% Similarity=0.002 Sum_probs=205.6
Q ss_pred hhhhhcCCC--CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC--------------------
Q 005125 236 MGNIVKQPS--GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAI--NSS-------------------- 291 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~-------------------- 291 (713)
+-..|.+.| ++|..+++.+...+...|..+-..|.+.|++++|+.+|.+..+. .|+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 334455555 66888888877778889999999999999999999999998764 333
Q ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-
Q 005125 292 --------------KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL- 356 (713)
Q Consensus 292 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 356 (713)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|++.|+++...
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 34456667777778888888888887753 234567888888888888888888888876541
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhh
Q 005125 357 ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEY 436 (713)
Q Consensus 357 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 436 (713)
+.|+. ..+......+...|++++|.+.+..+++.+......++..+...|.+.|++++|.+.|++....
T Consensus 385 ~~Pd~-------~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---- 453 (857)
T PLN03077 385 VSPDE-------ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK---- 453 (857)
T ss_pred CCCCc-------eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----
Confidence 34554 2333444456678888899998888888876665678888999999999999999999987642
Q ss_pred HHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH------H---HH-------------H
Q 005125 437 YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI-DPNNKEVIKGVKM------A---KA-------------M 493 (713)
Q Consensus 437 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~------~---~~-------------~ 493 (713)
+...|..+...|...|++++|+..|++.+.. .|+.......+.. + .. .
T Consensus 454 ---------d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 454 ---------DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred ---------CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 3346788889999999999999999998753 3433222211110 0 00 0
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
.....+-..|.+.|++++|...|+.. +.+...|..+...|.+.|+.++|++.|++..+
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01112345566666666666666654 33556666666666666666666666666655
No 82
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3e-15 Score=122.84 Aligned_cols=82 Identities=32% Similarity=0.515 Sum_probs=77.4
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCCCHHHHHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKS 707 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 707 (713)
...++.|++ ||+|+.+.|.|.+++.+||++.|++||+|+.++++..++|..+|||.||++|+.++++.|+++++|++.
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~~l~~~ 101 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKAELEKK 101 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHHHHHHH
Confidence 555667888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 005125 708 VKLY 711 (713)
Q Consensus 708 ~~~~ 711 (713)
|.++
T Consensus 102 i~~~ 105 (106)
T KOG0907|consen 102 IAKH 105 (106)
T ss_pred HHhc
Confidence 9875
No 83
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.3e-15 Score=137.56 Aligned_cols=100 Identities=27% Similarity=0.581 Sum_probs=91.7
Q ss_pred ceeecchhHHHHHhhcCC--ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVTSPG--MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~--~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+.+..+|...+...+ .++|.|++ ||+|+.+.|+|..++.+||+.+|++||+|++...+..+||.++|||++|+
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFR 82 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence 345667788888776665 66777999 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|.+++++.|+++..|+++|++|.
T Consensus 83 ng~kid~~qGAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 83 NGVKIDQIQGADASGLEEKVAKYA 106 (288)
T ss_pred cCeEeeeecCCCHHHHHHHHHHHh
Confidence 999999999999999999999985
No 84
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.2e-15 Score=126.48 Aligned_cols=101 Identities=24% Similarity=0.409 Sum_probs=91.0
Q ss_pred cceeecchhHHHHH-hhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 612 NLVFVSSNERFRHF-VTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 612 ~i~~~~~~~~~~~~-l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
.+..+.+..+|... +....+++|.|++ ||+|+.+.|.++++..+| +.+.|++||.|+.++++..|+|.++||+++|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 34455667788775 4667889999999 999999999999999998 6699999999999999999999999999999
Q ss_pred ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 688 KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 688 ~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
++|+.++++.|+ +.+.|.++|+++.
T Consensus 123 knGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred ECCEEeeeecccCCHHHHHHHHHHHh
Confidence 999999999999 9999999999874
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.62 E-value=1.2e-13 Score=135.51 Aligned_cols=196 Identities=15% Similarity=0.106 Sum_probs=147.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHH
Q 005125 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH---RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 365 (713)
++..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.+|...|++++|+..|+++++ ..|++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~-~~p~~~~-- 105 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR-LHPNHPD-- 105 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCCc--
Confidence 345577888888888888888888888888888888764 5778888888888888888888888888 7776521
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccC
Q 005125 366 EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAG 445 (713)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 445 (713)
.+.+++.+|.++...
T Consensus 106 ------------------------------------~~~a~~~~g~~~~~~----------------------------- 120 (235)
T TIGR03302 106 ------------------------------------ADYAYYLRGLSNYNQ----------------------------- 120 (235)
T ss_pred ------------------------------------hHHHHHHHHHHHHHh-----------------------------
Confidence 013445555555432
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHh
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA-----MASARLRGNLLFKASKYKEACYAYSEGL 520 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al 520 (713)
.+.++...|++++|+..|++++..+|++...+..+..+.. ......+|.+++..|++.+|+..|++++
T Consensus 121 -------~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 121 -------IDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred -------cccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 0112223467899999999999999998766543322211 1123468999999999999999999999
Q ss_pred ccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 521 EHEAYN---SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 521 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+..|+. +.+++.+|.++..+|++++|..+++......|+
T Consensus 194 ~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 194 ENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 997754 689999999999999999999998888776653
No 86
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.61 E-value=3e-14 Score=126.77 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=109.9
Q ss_pred HHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005125 423 HDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL 502 (713)
Q Consensus 423 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~ 502 (713)
..+|+++++++|+ .++.+|.++...|++++|+.+|++++.++|.+..++. .+|.+
T Consensus 13 ~~~~~~al~~~p~-------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~------------~lg~~ 67 (144)
T PRK15359 13 EDILKQLLSVDPE-------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHI------------ALAGT 67 (144)
T ss_pred HHHHHHHHHcCHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH------------HHHHH
Confidence 4567788888775 2556799999999999999999999999999999998 79999
Q ss_pred HHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 503 LFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 503 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|+++..+.
T Consensus 68 ~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 68 WMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988876
No 87
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.61 E-value=1.7e-13 Score=151.49 Aligned_cols=280 Identities=10% Similarity=0.011 Sum_probs=198.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|.+.+++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.+++.+|.-. .++.+.+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------ 97 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------ 97 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------
Confidence 56888899999999999999999999999999999999999999999999999987777665 5555544433
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
++ .+++++-..+. ..+.+. .++..+|.+|..+|++++|...|+++++.+|++ +.+.+++|..|
T Consensus 98 --------~~-~~ve~~~~~i~-~~~~~k------~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n-~~aLNn~AY~~ 160 (906)
T PRK14720 98 --------KW-AIVEHICDKIL-LYGENK------LALRTLAEAYAKLNENKKLKGVWERLVKADRDN-PEIVKKLATSY 160 (906)
T ss_pred --------ch-hHHHHHHHHHH-hhhhhh------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc-HHHHHHHHHHH
Confidence 11 11122221111 111111 233344444444444444444444444444444 38889999999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HH-
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKM-AK- 491 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~- 491 (713)
... ++++|+.++.+|+. .+...+++.++.+++.+.+..+|++.+....+.+ +.
T Consensus 161 ae~-dL~KA~~m~~KAV~------------------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~ 215 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIY------------------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLG 215 (906)
T ss_pred HHh-hHHHHHHHHHHHHH------------------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHh
Confidence 999 99999999999864 2556679999999999999999998876543222 11
Q ss_pred ------HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Q 005125 492 ------AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP-SYSKAR 564 (713)
Q Consensus 492 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~ 564 (713)
.+..+.-+-..|...++|++++..++.+++++|.+..+...++.||. +.|.. ...++.++++.. .+..--
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~ 292 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKP 292 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCcc
Confidence 13334445577888999999999999999999999999999999998 55554 666666666532 122223
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH
Q 005125 565 LEAAIQDYEMLIREIPGNEEVG 586 (713)
Q Consensus 565 ~~~A~~~~~~al~~~p~~~~~~ 586 (713)
+..|+..|++-+.+++++.-..
T Consensus 293 ~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 293 VKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred HHHHHHHHHHHeeecCCCEEEE
Confidence 3679999999999998886543
No 88
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.60 E-value=6.3e-15 Score=142.73 Aligned_cols=284 Identities=14% Similarity=0.097 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAIN------SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC------YHR 328 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 328 (713)
+|..+|++|+..++|++|+++-.--|.+. -..+...-++|.++-.+|.|++|+.++.+-+.+... ...
T Consensus 57 IYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~R 136 (639)
T KOG1130|consen 57 IYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESR 136 (639)
T ss_pred HHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhH
Confidence 57899999999999999999866544331 223556778999999999999999999998876432 267
Q ss_pred HHHHHHHHHHHcCC-------------HHHHHHHHHHHhhhhccccHHHH-------HHHHHHHHHHHHHHHhhcHHHHH
Q 005125 329 AHHRLAMLYFRLGE-------------AEKAVSHYKKSSSLANQKDIAKA-------EALHKHLTKCNEARELKRWNDLL 388 (713)
Q Consensus 329 ~~~~la~~~~~~g~-------------~~~A~~~~~~al~~~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~ 388 (713)
+++++|.+|...|+ .+++...++.|++ ..-.+.... ..-.++-+++..|.-+|+|+.|+
T Consensus 137 AlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~-fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai 215 (639)
T KOG1130|consen 137 ALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK-FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAI 215 (639)
T ss_pred HHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH-HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHH
Confidence 99999999998764 2334444555544 333333222 22333445555666789999999
Q ss_pred HHHHHHHHcCCCC-----hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCH
Q 005125 389 KETQNVISFGADS-----APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRF 463 (713)
Q Consensus 389 ~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 463 (713)
...+.-+.+..+. ...++.++|.+|.-+|+++.|+++|+..+.+..+..+. ...+...|.+|..|.-..++
T Consensus 216 ~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r----~vEAQscYSLgNtytll~e~ 291 (639)
T KOG1130|consen 216 HFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR----TVEAQSCYSLGNTYTLLKEV 291 (639)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch----hHHHHHHHHhhhHHHHHHHH
Confidence 9888777664332 23688899999999999999999999987765544332 23577889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-----CC-CHHHHHHHHHHH
Q 005125 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE-----AY-NSVLLCNRAACR 537 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~ 537 (713)
++|+.++.+-+.+... +-.++....+++.+|.++-..|..++|+.+.+..+++. +. ...+..|+...-
T Consensus 292 ~kAI~Yh~rHLaIAqe------L~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~ 365 (639)
T KOG1130|consen 292 QKAITYHQRHLAIAQE------LEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLI 365 (639)
T ss_pred HHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHH
Confidence 9999999998876433 22334445667789999999999999999998887652 22 345677888888
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 005125 538 SKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 538 ~~~g~~~~A~~~~~~al~ 555 (713)
..+|..+.-....+..+.
T Consensus 366 ~~lG~~ds~~~~te~~i~ 383 (639)
T KOG1130|consen 366 LELGQEDSLVDDTELIID 383 (639)
T ss_pred HHhCCCcccCCcHHHHhh
Confidence 888876654444444443
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=6.6e-12 Score=133.45 Aligned_cols=279 Identities=18% Similarity=0.149 Sum_probs=207.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
+.+.+.....++...|++++|++++......-.+...++-.+|.++..+|++++|...|...|..+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45778888999999999999999999988888888899999999999999999999999999999999999999998887
Q ss_pred HHcC-----CHHHHHHHHHHHhhhhccccHHHH-------------HHHHHHHH----HH---------HHHHHhhc---
Q 005125 338 FRLG-----EAEKAVSHYKKSSSLANQKDIAKA-------------EALHKHLT----KC---------NEARELKR--- 383 (713)
Q Consensus 338 ~~~g-----~~~~A~~~~~~al~~~~p~~~~~~-------------~~~~~~~~----~~---------~~~~~~~~--- 383 (713)
.... +.+.-...|+.... ..|...... ..+..++. ++ ..+.....
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~-~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAE-KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHH-hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 4333 45666777776655 455422110 00111110 00 00110111
Q ss_pred HHHHHHHHHHHHHc-------------CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHH
Q 005125 384 WNDLLKETQNVISF-------------GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLL 450 (713)
Q Consensus 384 ~~~A~~~~~~al~~-------------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 450 (713)
..+.+..|...++. .|.....+++.++..|...|++++|+.++++|+...|. .++.+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt----------~~ely 231 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT----------LVELY 231 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----------cHHHH
Confidence 11112222222211 11112246678899999999999999999999999984 57799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--CCC--
Q 005125 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE--AYN-- 526 (713)
Q Consensus 451 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~-- 526 (713)
+..|.+|...|++.+|.+.++.|-.+++.+-.... ..+..+++.|+.++|.+.+..-...+ |..
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNs------------K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLADRYINS------------KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHH------------HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 99999999999999999999999999999877666 57888899999999999988776554 211
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 527 -----SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 527 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.+....-|.+|.+.|++..|+..|..+.+..-+
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 233456789999999999999999998876433
No 90
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=5.6e-14 Score=132.44 Aligned_cols=103 Identities=33% Similarity=0.580 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
++.+...|+-+++.++|.+|+..|.+||+++|.++.+|.++|.+|.++|.++.|++.++.+|.+||.+..+|.+||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccH
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
.+|++++|++.|+++++ ++|++.
T Consensus 161 ~~gk~~~A~~aykKaLe-ldP~Ne 183 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALE-LDPDNE 183 (304)
T ss_pred ccCcHHHHHHHHHhhhc-cCCCcH
Confidence 99999999999999999 999985
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.54 E-value=2.3e-13 Score=121.06 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 341 (713)
++.+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhccccH
Q 005125 342 EAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~~p~~~ 362 (713)
++++|+..|++++. +.|++.
T Consensus 107 ~~~eAi~~~~~Al~-~~p~~~ 126 (144)
T PRK15359 107 EPGLAREAFQTAIK-MSYADA 126 (144)
T ss_pred CHHHHHHHHHHHHH-hCCCCh
Confidence 99999999999999 999885
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.53 E-value=2e-12 Score=135.79 Aligned_cols=205 Identities=16% Similarity=0.095 Sum_probs=148.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHH
Q 005125 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 365 (713)
||+.+.++..+|.++...|+.++|...+.++....|.+ .+..+..|.++...|++++|+..+++++. ..|.+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~P~~~--- 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD-DYPRDL--- 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcH---
Confidence 68888888888888888888888888888888776644 45666778888888888888888888888 777763
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc----cCHHHHHHHhhccccCChhhHHhhh
Q 005125 366 EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL----QRHQEAHDSYNKSPKFCLEYYTKLF 441 (713)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~ 441 (713)
.++.. +..+... +....+...+.......|
T Consensus 78 --------------------------------------~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 111 (355)
T cd05804 78 --------------------------------------LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENP------- 111 (355)
T ss_pred --------------------------------------HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCC-------
Confidence 22221 2233332 333344444433222222
Q ss_pred cccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 442 GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 442 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
.....+..+|.++...|++++|+..++++++++|++..++. .+|.++...|++++|+.++++++.
T Consensus 112 ---~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~------------~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 112 ---DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVH------------AVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred ---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHH------------HHHHHHHHcCCHHHHHHHHHhhhh
Confidence 24556677888888888888888888888888888877665 588888888888888888888888
Q ss_pred cCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 522 HEAYNS----VLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558 (713)
Q Consensus 522 ~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 558 (713)
..|..+ ..|..+|.++...|++++|+..|++++...|
T Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 177 TWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred ccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 776432 3466788888888888888888888876665
No 93
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.52 E-value=6.3e-14 Score=115.67 Aligned_cols=83 Identities=11% Similarity=0.160 Sum_probs=73.2
Q ss_pred hHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 620 ERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 620 ~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+.|...+. ..+.+++.|++ ||+|+.+.|.|++++.++++ +.|++||+|+.+.++..++|.++|||++|++|+.++
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 45666665 35567888999 99999999999999999976 689999999999999999999999999999999999
Q ss_pred eecCC-CHH
Q 005125 695 EIPGH-QCE 702 (713)
Q Consensus 695 ~~~g~-~~~ 702 (713)
++.|. +..
T Consensus 83 ~~~G~~~~~ 91 (114)
T cd02954 83 IDLGTGNNN 91 (114)
T ss_pred EEcCCCCCc
Confidence 99987 433
No 94
>PHA02278 thioredoxin-like protein
Probab=99.51 E-value=1.7e-13 Score=112.70 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=80.0
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCc----HhhHHHcCCCcccEEEEEECC
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDH----PYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~----~~~~~~~~v~~~Pt~~~~~~g 690 (713)
+..+|...+...+.+++.|++ ||+|+.+.|.|+++++.+ ..+.|+.+|+|.. +.++..++|.++|||++|++|
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 356788888788899999999 999999999999999874 4577999999975 789999999999999999999
Q ss_pred eEeeeecCC-CHHHHHHH
Q 005125 691 SRVKEIPGH-QCELLEKS 707 (713)
Q Consensus 691 ~~~~~~~g~-~~~~~~~~ 707 (713)
+.++++.|. +.+.|.++
T Consensus 83 ~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEEeCCCCHHHHHhh
Confidence 999999997 88888765
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.4e-10 Score=118.50 Aligned_cols=373 Identities=16% Similarity=0.094 Sum_probs=243.7
Q ss_pred CchhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCCCchhhhHhh--cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 204 NATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPSGEFPQCISS--LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 204 ~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~~~a~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
.+.++|+....+.+...|++..+. .--+++.|-...-++|..+... .........+..+.+.|+.+..++|+..
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~----~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAI----RCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhH----hhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 344699999999999987533222 1112444433333566655555 2122223347999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------CC-CHHHH
Q 005125 282 YDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRID------------------------------PC-YHRAH 330 (713)
Q Consensus 282 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------------------p~-~~~~~ 330 (713)
++ -.++.+..++...|.+++++|+|++|+..|+..++-+ |+ ..+.+
T Consensus 102 ~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 102 LK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELL 178 (652)
T ss_pred Hh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHH
Confidence 99 4566667788889999999999999999999885432 22 35678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhh----h---ccc-cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSL----A---NQK-DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA 402 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~----~---~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 402 (713)
++.|.++...|+|.+|++.+++++.. + +.. +....+.-.....++.++..+|+-.+|...|...++.+|.+.
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999441 1 111 112233344567788899999999999999999998877654
Q ss_pred HH------------------------------------------------HHHHHHHHHHHccCHHHHHHHhhccccCCh
Q 005125 403 PQ------------------------------------------------VYALQAEALLRLQRHQEAHDSYNKSPKFCL 434 (713)
Q Consensus 403 ~~------------------------------------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 434 (713)
+. ++.+.+.+.+..+.-+.+.+.........|
T Consensus 259 ~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p 338 (652)
T KOG2376|consen 259 PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSP 338 (652)
T ss_pred hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCc
Confidence 21 112222222233333333333333333333
Q ss_pred hhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Q 005125 435 EYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACY 514 (713)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 514 (713)
... ..++..-+ .......+.+|.+++....+-+|.+.....+ .++.+.+.+|+++.|++
T Consensus 339 ~~~---------~~~ll~~~-t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L-----------~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 339 ESL---------FPILLQEA-TKVREKKHKKAIELLLQFADGHPEKSKVVLL-----------LRAQLKISQGNPEVALE 397 (652)
T ss_pred hHH---------HHHHHHHH-HHHHHHHHhhhHHHHHHHhccCCchhHHHHH-----------HHHHHHHhcCCHHHHHH
Confidence 221 11222222 2222236888888888888888887333322 58889999999999999
Q ss_pred HHHHHh--------ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChH--------HHH-------HH
Q 005125 515 AYSEGL--------EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM----PSYSK--------ARL-------EA 567 (713)
Q Consensus 515 ~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~--------a~~-------~~ 567 (713)
.+...+ +.. ..+.+-..+-..|.+.++.+.|...+..|+.-. +.... +.+ ++
T Consensus 398 il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 999433 222 235555666677788888777777777776532 11111 111 89
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCcccc
Q 005125 568 AIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDVK 605 (713)
Q Consensus 568 A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~~ 605 (713)
|...+++.++.+|++.++.-.+.-+.-.+...+++++.
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~ 514 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLS 514 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHh
Confidence 99999999999999999887776666555444444443
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.50 E-value=1.6e-12 Score=122.03 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=128.7
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 451 (713)
......|...|+|+......++.. +|.. -+...++.++++..+++++..+|+ ++..|.
T Consensus 20 ~~~~~~Y~~~g~~~~v~~~~~~~~--~~~~----------~~~~~~~~~~~i~~l~~~L~~~P~----------~~~~w~ 77 (198)
T PRK10370 20 FLCVGSYLLSPKWQAVRAEYQRLA--DPLH----------QFASQQTPEAQLQALQDKIRANPQ----------NSEQWA 77 (198)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHh--Cccc----------cccCchhHHHHHHHHHHHHHHCCC----------CHHHHH
Confidence 344556778888887644432221 1110 111367789999999999999995 566899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHccc--HHHHHHHHHHHhccCCCCHH
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL-FKASK--YKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~p~~~~ 528 (713)
.+|.+|...|++++|+..|+++++++|+++..+. .+|.++ ...|+ +++|...++++++.+|+++.
T Consensus 78 ~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~------------~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~ 145 (198)
T PRK10370 78 LLGEYYLWRNDYDNALLAYRQALQLRGENAELYA------------ALATVLYYQAGQHMTPQTREMIDKALALDANEVT 145 (198)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh
Confidence 9999999999999999999999999999999998 688875 67777 59999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
+++++|.++...|++++|+.++++++++.|.+.
T Consensus 146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 146 ALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999999999999988754
No 97
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.47 E-value=4e-13 Score=109.96 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=78.5
Q ss_pred hHHHHHhhcCCceEEEeec----CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 620 ERFRHFVTSPGMAVVLFCS----KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~----cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.+|.+.+...+..++.|++ |++|+.+.|.|++++++|++ +.|++||+|+.+.++..|+|+++|||++|++|+.++
T Consensus 18 ~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~ 97 (111)
T cd02965 18 ATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVG 97 (111)
T ss_pred ccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEE
Confidence 4666677777888888887 99999999999999999976 679999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHH
Q 005125 695 EIPGH-QCELLEK 706 (713)
Q Consensus 695 ~~~g~-~~~~~~~ 706 (713)
++.|. +.+++..
T Consensus 98 ~~~G~~~~~e~~~ 110 (111)
T cd02965 98 VLAGIRDWDEYVA 110 (111)
T ss_pred EEeCccCHHHHhh
Confidence 99999 7777753
No 98
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.47 E-value=8e-13 Score=111.73 Aligned_cols=100 Identities=27% Similarity=0.415 Sum_probs=87.4
Q ss_pred cccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 608 KFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 608 ~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
+|| .+..+.+.++|...+...+.+++.|++ |++|+.+.|.++++++.+|++.|++||++..+.++..++|.++||++
T Consensus 2 ~~g-~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 2 GHG-KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CCC-CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 455 455667778999999888888989998 99999999999999999999999999999999999999999999999
Q ss_pred EEECCeEeeeecCC---------CHHHHHHHH
Q 005125 686 IYKNGSRVKEIPGH---------QCELLEKSV 708 (713)
Q Consensus 686 ~~~~g~~~~~~~g~---------~~~~~~~~~ 708 (713)
+|++|+.++++.|. +.+.|+.||
T Consensus 81 ~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 81 LFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 99999999887655 456666665
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.47 E-value=1.6e-12 Score=135.52 Aligned_cols=225 Identities=15% Similarity=0.066 Sum_probs=177.1
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
|.....-..+|..+...|-..+|+..|++. ..|.....||...|+..+|.....+-++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 334445667777778888888888877773 5566677788888888888777777777 5556677777777
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
+....--|++|.+..+.... .+...+|.....
T Consensus 466 v~~d~s~yEkawElsn~~sa------------------------------------------------rA~r~~~~~~~~ 497 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISA------------------------------------------------RAQRSLALLILS 497 (777)
T ss_pred hccChHHHHHHHHHhhhhhH------------------------------------------------HHHHhhcccccc
Confidence 66555445555544443322 344445666667
Q ss_pred ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 005125 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMAS 495 (713)
Q Consensus 416 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 495 (713)
.++|+++..+++..++++|- ....|+.+|.+..+.++++.|.++|..++.++|++.++|+
T Consensus 498 ~~~fs~~~~hle~sl~~npl----------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWn---------- 557 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPL----------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWN---------- 557 (777)
T ss_pred chhHHHHHHHHHHHhhcCcc----------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhh----------
Confidence 88999999999999998884 4557888999999999999999999999999999999998
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 496 ARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 496 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
|++.+|.+.++-.+|...+.+|++.+-++..+|.|.-.+....|.+++|+..|.+.+.+.-.
T Consensus 558 --Nls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 558 --NLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred --hhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 79999999999999999999999999888999999999999999999999999998876433
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=2.4e-10 Score=111.85 Aligned_cols=282 Identities=16% Similarity=0.133 Sum_probs=181.1
Q ss_pred hhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 247 FPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK-ATYRSNKSAALIGLGRQIEALVECKEAIRI 322 (713)
Q Consensus 247 a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 322 (713)
|.....+ ..+...-.+..-+.+..+.|+++.|-.++.++-+..+++ ......++.++...|+++.|..-..++++.
T Consensus 103 AEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~ 182 (400)
T COG3071 103 AEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEM 182 (400)
T ss_pred HHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 4444444 233333455555566677788888888877777774433 345666777777778888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHH--HHHHHHHHHHhhcHHHHHHHHHHHHHcCCC
Q 005125 323 DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHK--HLTKCNEARELKRWNDLLKETQNVISFGAD 400 (713)
Q Consensus 323 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 400 (713)
.|.++.++.....+|...|++.+......+..+ ..--+......+.. +..........+..+.-....+ .+...-.
T Consensus 183 ~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~-~~pr~lr 260 (400)
T COG3071 183 TPRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK-NQPRKLR 260 (400)
T ss_pred CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH-hccHHhh
Confidence 888888877777888888888777777666555 22111111111111 1111111111111111111111 1111111
Q ss_pred ChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 401 SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 401 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 480 (713)
+.+.+....+.-+..+|++++|.+..+++++..-+ +.....+ -....++...=++..++.++..|++
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-----------~~L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-----------PRLCRLI--PRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-----------hhHHHHH--hhcCCCCchHHHHHHHHHHHhCCCC
Confidence 22356666677888889999999888888775432 2211111 2235677888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 481 KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+..+. .+|.++++.+.|.+|..+|+.|++..| ....+..+|.++.++|+..+|.+.++.++.+
T Consensus 328 p~L~~------------tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLS------------TLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHH------------HHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 87766 689999999999999999999998887 5677888899999999999999998888754
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.46 E-value=1e-11 Score=137.06 Aligned_cols=152 Identities=11% Similarity=-0.033 Sum_probs=136.3
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 391 TQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470 (713)
Q Consensus 391 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 470 (713)
........|++ +.++.++|.+....|.+++|+.+++.++++.|++ ..++.+++.++.+.+++++|+..+
T Consensus 75 ~~~~~~~~~~~-~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~----------~~a~~~~a~~L~~~~~~eeA~~~~ 143 (694)
T PRK15179 75 LLDYVRRYPHT-ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS----------SEAFILMLRGVKRQQGIEAGRAEI 143 (694)
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc----------HHHHHHHHHHHHHhccHHHHHHHH
Confidence 33334445555 4899999999999999999999999999999964 558889999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 471 QDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDC 550 (713)
Q Consensus 471 ~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 550 (713)
++++..+|++...+. .+|.++.+.|++++|+.+|++++..+|+++.++..+|.++..+|+.++|...|
T Consensus 144 ~~~l~~~p~~~~~~~------------~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 144 ELYFSGGSSSAREIL------------LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHhhcCCCCHHHHH------------HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999988 69999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHHH
Q 005125 551 TAALIVMPSYSKARL 565 (713)
Q Consensus 551 ~~al~~~p~~~~a~~ 565 (713)
++|++...+-...+.
T Consensus 212 ~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 212 QAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHhhCcchHHHH
Confidence 999998877665543
No 102
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.46 E-value=7.8e-13 Score=110.27 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=83.2
Q ss_pred chhHHHHHhhc--CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH---hhHHHcCCCcccEEEEEECC
Q 005125 618 SNERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP---YIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 618 ~~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~---~~~~~~~v~~~Pt~~~~~~g 690 (713)
+.++|...+.. .+.+++.|++ |++|+.+.|.|+++++.++.+.|+.||.|+.+ .++..++|.++|||+||++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 34677777754 4567777998 99999999999999999988999999999874 79999999999999999999
Q ss_pred eEeeeecCCCHHHHHHHHHhh
Q 005125 691 SRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+.++++.|.++++|.+.|..+
T Consensus 82 ~~v~~~~G~~~~~l~~~~~~~ 102 (103)
T cd02985 82 EKIHEEEGIGPDELIGDVLYY 102 (103)
T ss_pred eEEEEEeCCCHHHHHHHHHhc
Confidence 999999999999999988765
No 103
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=4.4e-10 Score=114.87 Aligned_cols=288 Identities=17% Similarity=0.121 Sum_probs=187.3
Q ss_pred hhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 247 FPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRID 323 (713)
Q Consensus 247 a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (713)
|.+...+ ..|++..++...-.++.+.++|++|+...+.-....-. ....+..|.|.++++..++|+..++ .++
T Consensus 31 a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk~Dealk~~~---~~~ 106 (652)
T KOG2376|consen 31 AVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNKLDEALKTLK---GLD 106 (652)
T ss_pred HHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHcccHHHHHHHHh---ccc
Confidence 4444444 56888888888888888888888888444332221111 1222678888888888888888888 456
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHcCCCCh
Q 005125 324 PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKE-TQNVISFGADSA 402 (713)
Q Consensus 324 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~ 402 (713)
+.+.......|.+++++|+|++|+..|+..++ -+.++.+..... .++..+ .++.. ..+.....|++.
T Consensus 107 ~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~dd~d~~~r~-nl~a~~----------a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 107 RLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NNSDDQDEERRA-NLLAVA----------AALQVQLLQSVPEVPEDS 174 (652)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCchHHHHHHH-HHHHHH----------HhhhHHHHHhccCCCcch
Confidence 66667788888888888888888888888877 444432211110 000000 01111 334444556666
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHH------hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYT------KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476 (713)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 476 (713)
-+.+++.+-++...|+|.+|++.+++++.++..... .-+ ...-..+...++.++..+|+.++|...|...+..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEei-e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEI-EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 688899999999999999999999999544322110 000 0123457788999999999999999999999998
Q ss_pred CCCCHHHHHHHHH-H------------------------------------HHHHHHHHHHHH-----------------
Q 005125 477 DPNNKEVIKGVKM-A------------------------------------KAMASARLRGNL----------------- 502 (713)
Q Consensus 477 ~p~~~~~~~~~~~-~------------------------------------~~~~~~~~lg~~----------------- 502 (713)
+|.+......... + +.-..+.+.+.+
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 8776533221100 0 001111122222
Q ss_pred -----------------HHHcccHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 503 -----------------LFKASKYKEACYAYSEGLEHEAYN-SVLLCNRAACRSKLGQYEKAVEDCT 551 (713)
Q Consensus 503 -----------------~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~ 551 (713)
..+...+.+|++.+....+.+|.. ..+.+.++.+...+|+++.|++.+.
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 122224666777777777778877 6678888999999999999999998
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.45 E-value=3.1e-12 Score=120.21 Aligned_cols=110 Identities=17% Similarity=0.229 Sum_probs=102.4
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAAL-IGLGR--QIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~ 330 (713)
.+|++++.|+.+|..|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|+..++++++.+|++..++
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 56778889999999999999999999999999999999999999999975 67787 5999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
+.+|.++...|++++|+.+|+++++ +.|.+...
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~-l~~~~~~r 180 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLD-LNSPRVNR 180 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCccH
Confidence 9999999999999999999999999 77776543
No 105
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=8.9e-13 Score=124.40 Aligned_cols=107 Identities=42% Similarity=0.595 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-------
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------- 565 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------- 565 (713)
+..++.-|+-+++.++|.+|+..|.+||+++|.++..|+++|.+|.++|.++.|++.++.|+.+||.+..+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 4556689999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 005125 566 -----EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQ 599 (713)
Q Consensus 566 -----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 599 (713)
++|++.|+++|+++|+|+..+..|..+...++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999998888776653
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.44 E-value=2.7e-11 Score=134.23 Aligned_cols=220 Identities=14% Similarity=0.062 Sum_probs=181.8
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHH
Q 005125 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE 366 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~ 366 (713)
..+|.+..++..+...+...+++++|+..++.+++..|+....|+.+|.++...+++.+|.-. .++. .-+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-~~~~~----- 96 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID-SFSQN----- 96 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh-hcccc-----
Confidence 457899999999999999999999999999999999999999999999999999999988866 6766 44443
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCc
Q 005125 367 ALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGG 446 (713)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 446 (713)
.+| .+++++-..+...+.+. .+++.+|.||.++|++++|...|+++++.+|+ +
T Consensus 97 ---------------~~~-~~ve~~~~~i~~~~~~k-~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~----------n 149 (906)
T PRK14720 97 ---------------LKW-AIVEHICDKILLYGENK-LALRTLAEAYAKLNENKKLKGVWERLVKADRD----------N 149 (906)
T ss_pred ---------------cch-hHHHHHHHHHHhhhhhh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc----------c
Confidence 244 44444444444455553 68899999999999999999999999999985 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
+.++.++|..|... ++++|++++.+|+.. +...++|.++.+++.+.+..+|++
T Consensus 150 ~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------------------~i~~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 150 PEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------------------FIKKKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------------------HHhhhcchHHHHHHHHHHhcCccc
Confidence 77999999999999 999999999999874 334557778888888888887776
Q ss_pred HHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 005125 527 SVL--------------------LCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAA 568 (713)
Q Consensus 527 ~~~--------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A 568 (713)
.+. +.-+=.+|...++|++++..++.+++.+|.+..++.+-|
T Consensus 203 ~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 203 FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 443 333447888999999999999999999999998877433
No 107
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.3e-09 Score=108.38 Aligned_cols=368 Identities=11% Similarity=-0.004 Sum_probs=248.6
Q ss_pred CCCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHH
Q 005125 202 CPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFE 276 (713)
Q Consensus 202 ~~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~ 276 (713)
...+...|-..|++||..+ ..+...|+ . .+.+-.... ..|..+..+ +-|.--..|+..-..--..|+..
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWl---k-Yae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWL---K-YAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHH---H-HHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccH
Confidence 3344569999999999988 33333232 1 122211111 456666666 56666677887777777889999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005125 277 DALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356 (713)
Q Consensus 277 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 356 (713)
-|...|++-++..|+ ..+|......-.+.+..+.|...|++.+-.+|+ ...|...+..-.+.|+..-|...|++|++
T Consensus 159 gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie- 235 (677)
T KOG1915|consen 159 GARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIE- 235 (677)
T ss_pred HHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH-
Confidence 999999999988886 457777777777888899999999999888876 67888999999999999999999999998
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHH--------------------------------------------HH
Q 005125 357 ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKE--------------------------------------------TQ 392 (713)
Q Consensus 357 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~--------------------------------------------~~ 392 (713)
.-.++...... +..-+.--.....++.|... |+
T Consensus 236 ~~~~d~~~e~l---fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 236 FLGDDEEAEIL---FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 43333211111 11111111112222233222 44
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHH-HHHcCCHHHHHHHHH
Q 005125 393 NVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQV-YIAAGRFEDAVKTAQ 471 (713)
Q Consensus 393 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~ 471 (713)
..+..+|-+. +.|+..-.+....|+.+.-.+.|++|+...|......+- ..-.++|.+.+.. -....+.+.+.+.|+
T Consensus 313 ~~v~~np~nY-DsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W-~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKNPYNY-DSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYW-RRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhCCCCc-hHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455566555 666666677777899999999999998877654332110 0123334333322 234678888899999
Q ss_pred HHHHhCCCCH----HHHHHHHHH----------HH-----------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 472 DAAQIDPNNK----EVIKGVKMA----------KA-----------MASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 472 ~al~~~p~~~----~~~~~~~~~----------~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
.+|++-|... ..|.+++.. ++ .........+-.++++++.....|++-|+..|.+
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 9998887643 334333221 00 1111223344567889999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH--------------HHHHHHHHHHHHhCCCCH
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL--------------EAAIQDYEMLIREIPGNE 583 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--------------~~A~~~~~~al~~~p~~~ 583 (713)
..+|...|.+-..+|+.+.|...|+-|+....-+..-.+ +.|...|++.|+..++..
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 999999999999999999999999999876433332222 889999999999988776
No 108
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.43 E-value=5.1e-12 Score=109.63 Aligned_cols=102 Identities=14% Similarity=0.017 Sum_probs=99.5
Q ss_pred cC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 254 LN-KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 254 ~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
+. +++-+.++.+|..++..|++++|...|+-+..++|.+...|++||.++..+|+|.+|+..|.+++.++|+++.++++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 55 77888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+|.|++..|+.+.|.+.|+.++.
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.42 E-value=1.6e-11 Score=113.91 Aligned_cols=175 Identities=18% Similarity=0.121 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 005125 278 ALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357 (713)
Q Consensus 278 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 357 (713)
+...+-+....+|++..+ .+++..+...|+-+.+..+..+++..+|.+...+..+|......|++..|+..++++.. +
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l 129 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-L 129 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-c
Confidence 444444445555555555 55555555555555555555555555555555555555555556666666666655555 5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhH
Q 005125 358 NQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYY 437 (713)
Q Consensus 358 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 437 (713)
.|++. .+|..+|.+|.+.|++++|...|.+++++.+.
T Consensus 130 ~p~d~-----------------------------------------~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-- 166 (257)
T COG5010 130 APTDW-----------------------------------------EAWNLLGAALDQLGRFDEARRAYRQALELAPN-- 166 (257)
T ss_pred CCCCh-----------------------------------------hhhhHHHHHHHHccChhHHHHHHHHHHHhccC--
Confidence 55542 45555555555555555555555555555553
Q ss_pred HhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005125 438 TKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYS 517 (713)
Q Consensus 438 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 517 (713)
++.+..++|..|.-.|+++.|..++..+....+.+..+.. +++.+...+|++++|...-.
T Consensus 167 --------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~------------NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 167 --------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ------------NLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred --------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH------------HHHHHHhhcCChHHHHhhcc
Confidence 3445555566666666666666666655555554544444 45555556666665555433
No 110
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.42 E-value=1.6e-12 Score=109.44 Aligned_cols=93 Identities=12% Similarity=0.263 Sum_probs=80.9
Q ss_pred chhHHHHHhhcCC-ceEEEeec--Cch--hH--HHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 618 SNERFRHFVTSPG-MAVVLFCS--KAE--HK--QVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 618 ~~~~~~~~l~~~~-~~vv~f~~--cg~--c~--~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+|...+.... ..|+.|++ ||+ |+ ++.|.+.++++.+ .++.|++||+|+.+.++.+++|+++||+++|
T Consensus 15 t~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lf 94 (120)
T cd03065 15 NEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVF 94 (120)
T ss_pred ChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEE
Confidence 4578998776665 45555666 776 99 8999999999886 4699999999999999999999999999999
Q ss_pred ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 688 KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++|+.++ +.|. +.+.|.+||++.
T Consensus 95 k~G~~v~-~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 95 KDDEVIE-YDGEFAADTLVEFLLDL 118 (120)
T ss_pred ECCEEEE-eeCCCCHHHHHHHHHHH
Confidence 9999988 9999 999999999875
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.42 E-value=2.4e-11 Score=112.71 Aligned_cols=180 Identities=19% Similarity=0.177 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 005125 309 QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLL 388 (713)
Q Consensus 309 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 388 (713)
...+...+-+....+|++..+ ..++..+...|+-+.++.+..++.. ..|.+.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~-------------------------- 100 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAI-AYPKDR-------------------------- 100 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhc-cCcccH--------------------------
Confidence 334666666777788988888 8899999999998888888888766 566552
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHH
Q 005125 389 KETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVK 468 (713)
Q Consensus 389 ~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 468 (713)
.+...+|...+..|+|.+|+..++++..+.|+ +..+|..+|.+|.+.|++++|..
T Consensus 101 ---------------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~----------d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 101 ---------------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT----------DWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred ---------------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCC----------ChhhhhHHHHHHHHccChhHHHH
Confidence 45555799999999999999999999999995 66789999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 469 TAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE 548 (713)
Q Consensus 469 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 548 (713)
.|.+++++.|+++.+.. |+|..++-.|+++.|..++..+....+.+..+..||+.+....|++++|..
T Consensus 156 ay~qAl~L~~~~p~~~n------------Nlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 156 AYRQALELAPNEPSIAN------------NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHHHHhccCCchhhh------------hHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 99999999999999988 899999999999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 005125 549 DCTAA 553 (713)
Q Consensus 549 ~~~~a 553 (713)
...+-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 76543
No 112
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=9.9e-13 Score=124.08 Aligned_cols=95 Identities=22% Similarity=0.321 Sum_probs=84.9
Q ss_pred chhHHHHHhh---cCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVT---SPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~---~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+..+|...+. ...+++|+||+ |++|+++.|.++++...| +.+.+++||+|..|.++..|||.++||+..|++|+
T Consensus 29 T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGq 108 (304)
T COG3118 29 TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQ 108 (304)
T ss_pred hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCc
Confidence 4556766542 24588999999 999999999999999998 67999999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
.|+.+.|. +.+.|++||+++.
T Consensus 109 pVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 109 PVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred CccccCCCCcHHHHHHHHHHhc
Confidence 99999999 7779999999874
No 113
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.41 E-value=2.9e-12 Score=106.74 Aligned_cols=94 Identities=23% Similarity=0.371 Sum_probs=85.1
Q ss_pred ecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 616 VSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 616 ~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+.+.++|...+...+.+++.|++ |++|+.+.|.|+.+...++ .+.|+.+|.| .+.++..++|.++|||++|++|+
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 45677888888777888888999 9999999999999998885 3789999999 78899999999999999999999
Q ss_pred EeeeecCCCHHHHHHHHHh
Q 005125 692 RVKEIPGHQCELLEKSVKL 710 (713)
Q Consensus 692 ~~~~~~g~~~~~~~~~~~~ 710 (713)
.++++.|.+++.|.++|++
T Consensus 83 ~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 83 LVAVIRGANAPLLNKTITE 101 (102)
T ss_pred EEEEEecCChHHHHHHHhh
Confidence 9999999999999999986
No 114
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=3.7e-09 Score=105.19 Aligned_cols=205 Identities=11% Similarity=0.028 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
...|...|..-..++++..|...|++||..+..+...|...+.+-++......|...+.+|+.+-|.--..|+..-.+-.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34577777777788888888888888888887778888888888888888888888888888888877777777777777
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
.+|+...|.+.|++-+. ..|+. .++..-...-..-..++.|...|++.+-..|+- ..|...+..-.+.|+
T Consensus 153 ~LgNi~gaRqiferW~~-w~P~e-------qaW~sfI~fElRykeieraR~IYerfV~~HP~v--~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME-WEPDE-------QAWLSFIKFELRYKEIERARSIYERFVLVHPKV--SNWIKYARFEEKHGN 222 (677)
T ss_pred HhcccHHHHHHHHHHHc-CCCcH-------HHHHHHHHHHHHhhHHHHHHHHHHHHheecccH--HHHHHHHHHHHhcCc
Confidence 78888888888888887 77765 334444444445556666666666666655553 455555666666666
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 480 (713)
..-|...|++|+....++.. ...++...|..-..++.++.|...|+-||..-|.+
T Consensus 223 ~~~aR~VyerAie~~~~d~~-------~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEE-------AEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 66666666666554333221 12233334444444555555555555555544443
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=2.9e-10 Score=134.82 Aligned_cols=286 Identities=16% Similarity=0.098 Sum_probs=195.5
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSS---------KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY- 326 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 326 (713)
.++......+..++..|++++|..++.++.+..+. .......++.++...|++++|..++++++...+..
T Consensus 407 ~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (903)
T PRK04841 407 ENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTW 486 (903)
T ss_pred cCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 34556677888889999999999999998765321 13455667888999999999999999999864442
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC--
Q 005125 327 ----HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD-- 400 (713)
Q Consensus 327 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 400 (713)
..++..+|.++...|++++|...+.+++. ..................+..+...|++++|...+++++.....
T Consensus 487 ~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~-~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 487 YYSRIVATSVLGEVHHCKGELARALAMMQQTEQ-MARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 24567889999999999999999999998 54433222333445677888899999999999999998876221
Q ss_pred ---C--hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 401 ---S--APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 401 ---~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
. ...++..+|.++...|++++|...+.+++........ ......+..+|.++...|++++|...+.++..
T Consensus 566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP-----QQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1234567789999999999999999999876442111 01345677789999999999999999999987
Q ss_pred hCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHH
Q 005125 476 IDPNNK---EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS----VLLCNRAACRSKLGQYEKAVE 548 (713)
Q Consensus 476 ~~p~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~ 548 (713)
+..... ....... ......+...|+.+.|..++.......+... ..+..++.++...|++++|..
T Consensus 641 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 712 (903)
T PRK04841 641 LLGNGRYHSDWIANAD--------KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEI 712 (903)
T ss_pred HHhcccccHhHhhHHH--------HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 643321 1111000 0012233345566666666555443222111 113455666666666666666
Q ss_pred HHHHHHHh
Q 005125 549 DCTAALIV 556 (713)
Q Consensus 549 ~~~~al~~ 556 (713)
.+++++..
T Consensus 713 ~l~~al~~ 720 (903)
T PRK04841 713 ILEELNEN 720 (903)
T ss_pred HHHHHHHH
Confidence 66666554
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.40 E-value=2.8e-11 Score=133.54 Aligned_cols=144 Identities=13% Similarity=0.012 Sum_probs=97.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHH
Q 005125 286 IAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365 (713)
Q Consensus 286 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 365 (713)
....|.+++++.+||.+....|++++|+..++.++++.|++..++..++.++.+++++++|+..+++++. .+|++.
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~-~~p~~~--- 154 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS-GGSSSA--- 154 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh-cCCCCH---
Confidence 3446777777777777777777777777777777777777777777777777777777777777777777 777663
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccC
Q 005125 366 EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAG 445 (713)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 445 (713)
..++.+|.++..+|++++|+.+|++++...|+
T Consensus 155 --------------------------------------~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~---------- 186 (694)
T PRK15179 155 --------------------------------------REILLEAKSWDEIGQSEQADACFERLSRQHPE---------- 186 (694)
T ss_pred --------------------------------------HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC----------
Confidence 55555566666666666666666666654442
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
.+.++..+|.++...|+.++|...|+++++...+-.
T Consensus 187 ~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 187 FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 344556666666666666666666666666544433
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.39 E-value=1.4e-11 Score=109.37 Aligned_cols=119 Identities=19% Similarity=0.144 Sum_probs=109.1
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
+.|++++...|+ +..+.+.+|..+...|++++|+..|++++..+|.++.++. .+|.++
T Consensus 4 ~~~~~~l~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~------------~la~~~ 61 (135)
T TIGR02552 4 ATLKDLLGLDSE----------QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWL------------GLAACC 61 (135)
T ss_pred hhHHHHHcCChh----------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHH
Confidence 356778888885 3457888999999999999999999999999999999887 699999
Q ss_pred HHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 504 FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 504 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
...|++++|+..|++++..+|+++..++.+|.++...|++++|+..++++++++|++....
T Consensus 62 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 62 QMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 9999999999999999999999999999999999999999999999999999999886643
No 118
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.38 E-value=4.8e-12 Score=108.91 Aligned_cols=98 Identities=10% Similarity=0.099 Sum_probs=82.9
Q ss_pred eeecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEE-EE
Q 005125 614 VFVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFK-IY 687 (713)
Q Consensus 614 ~~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~-~~ 687 (713)
..+.+..+|.+.+. ..+.+++.|++ ||+|+.+.|.|+++++++++ +.|++||+|+.++++..++|.+.|+++ ||
T Consensus 6 ~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ff 85 (142)
T PLN00410 6 PHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFF 85 (142)
T ss_pred hhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEE
Confidence 34466778888775 35567777999 99999999999999999977 788999999999999999999776555 99
Q ss_pred ECCe-EeeeecC--------C-CHHHHHHHHHhh
Q 005125 688 KNGS-RVKEIPG--------H-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~-~~~~~~g--------~-~~~~~~~~~~~~ 711 (713)
++|+ .+++..| . +.++|.+.|+.+
T Consensus 86 k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred ECCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 9999 9999999 4 788888888764
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=5e-10 Score=102.83 Aligned_cols=171 Identities=17% Similarity=0.081 Sum_probs=142.7
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 451 (713)
-..+.+....++...|..++++.....|.+. .+-...|..+...|.+++|+++|+..++-+|.+ ..++-
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~----------~v~~K 124 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSK-RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD----------TVIRK 124 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHhhchhhHHHHHHHHhccCcch----------hHHHH
Confidence 3345556677888889999988888888775 777778999999999999999999999888753 33555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHH
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLC 531 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 531 (713)
..-.+...+|+.-+|++.+..-++..+.+.++|. .++.+|+..|+|++|.-||++.+-+.|.++..+.
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~------------eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWH------------ELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHH------------HHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 5666777788888999999999999999999998 6999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHH
Q 005125 532 NRAACRSKLGQ---YEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 532 ~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+|.+++-+|. ++-|.++|.++++++|.+..+++
T Consensus 193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 193 RLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 99998887774 66788888888888887777776
No 120
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.37 E-value=7.1e-12 Score=105.30 Aligned_cols=94 Identities=28% Similarity=0.489 Sum_probs=87.3
Q ss_pred chhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 618 SNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 618 ~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+.+.|...+.. ....++.|++ |++|+.+.|.++++++.++ ++.|+.||.++.+.++..++|..+||+++|++|+.+
T Consensus 5 t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 5 TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEE
Confidence 45688888877 7788888888 9999999999999999997 899999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhh
Q 005125 694 KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~ 711 (713)
.++.|. +.+.|.+||+++
T Consensus 85 ~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 85 KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEESSSSHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcC
Confidence 999999 999999999875
No 121
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=6.7e-10 Score=106.35 Aligned_cols=272 Identities=14% Similarity=0.097 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------------
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR------------- 328 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------------- 328 (713)
-.-+|.++++.|+|++|+..|.-+.+.+.-+++.+.++|.|++.+|.|.+|.....++ |+.+-
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence 4557889999999999999999998877777889999999999999999998876665 22222
Q ss_pred -----------------HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 005125 329 -----------------AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKET 391 (713)
Q Consensus 329 -----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 391 (713)
-...||.+++..-.|++|++.|.+.+. -+|+. +......+..+.++.-++-+.+.+
T Consensus 136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~-dn~ey------~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ-DNPEY------IALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-cChhh------hhhHHHHHHHHHhcchhhhHHHHH
Confidence 233444555555556666666666665 44443 233344555566666666666666
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHc--cCH----------------HHHHHHhhc----------cccCChhhHHhhhcc
Q 005125 392 QNVISFGADSAPQVYALQAEALLRL--QRH----------------QEAHDSYNK----------SPKFCLEYYTKLFGL 443 (713)
Q Consensus 392 ~~al~~~p~~~~~~~~~la~~~~~~--g~~----------------~~A~~~~~~----------al~~~~~~~~~~~~~ 443 (713)
.-.++..|++. .+.+.++-.++++ |+. ..+...++. |++.-|...
T Consensus 209 ~vYL~q~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~------ 281 (557)
T KOG3785|consen 209 KVYLRQFPDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM------ 281 (557)
T ss_pred HHHHHhCCCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH------
Confidence 66666666654 4444444444332 111 111111111 112222111
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------------H--------------
Q 005125 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK-----------------A-------------- 492 (713)
Q Consensus 444 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----------------~-------------- 492 (713)
...+++..++...|..+++.++|+...+ .++|..+.-+.+.+.+. .
T Consensus 282 ~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 282 KHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred hhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 1246788889999999999999988776 46777765544321110 0
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 554 (713)
+.-.-.++..++-..+|++-+.++...-..--++-...+|+|.++...|++.+|.+.|-+.-
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 00011344455555566666665555555555555666677777777777777777665543
No 122
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.37 E-value=8.7e-12 Score=113.83 Aligned_cols=103 Identities=20% Similarity=0.305 Sum_probs=86.6
Q ss_pred ccccccceeecchhHHHHHhhcCC---ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTSPG---MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~~~---~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
..||.. ..+.....|...+...+ .+|+.|++ |++|+.+.|.|+.++..||.+.|++||++.. .++..++|.++
T Consensus 59 ~~~g~v-~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~v 136 (175)
T cd02987 59 RRFGKV-YELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDAL 136 (175)
T ss_pred CCCCeE-EEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCC
Confidence 456754 55666678888876543 67777888 9999999999999999999999999999987 89999999999
Q ss_pred cEEEEEECCeEeeeecCC--------CHHHHHHHHHhh
Q 005125 682 PAFKIYKNGSRVKEIPGH--------QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 711 (713)
|||++|++|+.++++.|. +.+.|+.+|.++
T Consensus 137 PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 137 PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999999999999998766 456777777654
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.35 E-value=5.9e-11 Score=124.09 Aligned_cols=205 Identities=20% Similarity=0.171 Sum_probs=157.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHH
Q 005125 296 RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKC 375 (713)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~ 375 (713)
-..++.++..+|-...|+..|++. ..|.....||...|+..+|.....+-++ .+|+
T Consensus 401 q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d--------------- 456 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPD--------------- 456 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCc---------------
Confidence 344555555555555555555552 3455555555555555555555554444 3332
Q ss_pred HHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHH
Q 005125 376 NEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQ 455 (713)
Q Consensus 376 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~ 455 (713)
+.+|..+|++....--|++|.++.+.. ++.+...+|.
T Consensus 457 ---------------------------~~lyc~LGDv~~d~s~yEkawElsn~~----------------sarA~r~~~~ 493 (777)
T KOG1128|consen 457 ---------------------------PRLYCLLGDVLHDPSLYEKAWELSNYI----------------SARAQRSLAL 493 (777)
T ss_pred ---------------------------chhHHHhhhhccChHHHHHHHHHhhhh----------------hHHHHHhhcc
Confidence 367777777777666666666665543 3445666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005125 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535 (713)
Q Consensus 456 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 535 (713)
.....++|+++.++++..++++|-....|+ .+|.+..+.+++..|..+|..++.++|++..+|.|++.
T Consensus 494 ~~~~~~~fs~~~~hle~sl~~nplq~~~wf------------~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ 561 (777)
T KOG1128|consen 494 LILSNKDFSEADKHLERSLEINPLQLGTWF------------GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLST 561 (777)
T ss_pred ccccchhHHHHHHHHHHHhhcCccchhHHH------------hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhH
Confidence 777889999999999999999999999998 69999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhC
Q 005125 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREI 579 (713)
Q Consensus 536 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~ 579 (713)
.|.++|+..+|...+++|++.+-++...|- ++|++.|.+.+.+.
T Consensus 562 ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 562 AYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999999999999999999999977766554 89999999988764
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.34 E-value=3.6e-11 Score=106.64 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=103.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+|.+....+.+|..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++..+|+++..++.+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 56677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|...|++++|+..|+++++ ++|++.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~-~~p~~~ 119 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE-ICGENP 119 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hccccc
Confidence 9999999999999999999999 999875
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4e-10 Score=103.47 Aligned_cols=205 Identities=19% Similarity=0.150 Sum_probs=145.1
Q ss_pred cCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005125 273 ARFEDALALYDRAIAI------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKA 346 (713)
Q Consensus 273 g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 346 (713)
.+.++-++++...+.. .++.-..+-....+....|+.+-|..++.+.....|.+..+-...|..+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 3455555555555543 2333445566677777888888898888888887888888888888888888999999
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHh
Q 005125 347 VSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSY 426 (713)
Q Consensus 347 ~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 426 (713)
+++|+..++ -+|.+. .++-..-.+...+|+.-+|++.+
T Consensus 106 ~e~y~~lL~-ddpt~~-----------------------------------------v~~KRKlAilka~GK~l~aIk~l 143 (289)
T KOG3060|consen 106 IEYYESLLE-DDPTDT-----------------------------------------VIRKRKLAILKAQGKNLEAIKEL 143 (289)
T ss_pred HHHHHHHhc-cCcchh-----------------------------------------HHHHHHHHHHHHcCCcHHHHHHH
Confidence 998888888 777773 23333344445566666666666
Q ss_pred hccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005125 427 NKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA 506 (713)
Q Consensus 427 ~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 506 (713)
..-++..+. +.++|..++.+|...|+|++|.-+|++.+-+.|.++..+. .+|.+++-+
T Consensus 144 n~YL~~F~~----------D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~------------rlae~~Yt~ 201 (289)
T KOG3060|consen 144 NEYLDKFMN----------DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ------------RLAEVLYTQ 201 (289)
T ss_pred HHHHHHhcC----------cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH------------HHHHHHHHH
Confidence 666655553 4557777888888888888888888888888888776665 466666655
Q ss_pred c---cHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005125 507 S---KYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLG 541 (713)
Q Consensus 507 g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 541 (713)
| ++.-|.++|.++++++|.+...++.+-.|...+-
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 4 5667888888888888877777776665554433
No 126
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=9e-10 Score=117.33 Aligned_cols=252 Identities=17% Similarity=0.092 Sum_probs=178.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 371 (713)
..+++.....++...|++++|++++++....-.+....+-..|.++..+|++++|...|...+. .+|++..-...+...
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~-rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID-RNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcHHHHHHHHHH
Confidence 3567788899999999999999999999888888899999999999999999999999999999 999986433333222
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-------------------------------hHHHHHHHHHHHHHccCHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADS-------------------------------APQVYALQAEALLRLQRHQ 420 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------------------------------~~~~~~~la~~~~~~g~~~ 420 (713)
...-. -......+.....|+......|.. .|.++..+-.+|....+.+
T Consensus 82 ~g~~~-~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 82 LGLQL-QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred Hhhhc-ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 21111 001113344445555444444432 1233333333333222221
Q ss_pred HHHHHhhc---cccCChhhHH----hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 421 EAHDSYNK---SPKFCLEYYT----KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 421 ~A~~~~~~---al~~~~~~~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
-....+.. .+........ ..-.+.....+++.++..|...|++++|+++.++||...|..++.+.
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~-------- 232 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYM-------- 232 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHH--------
Confidence 11111111 1111100000 00001112457788999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
..|.++-..|++.+|.++++.|-.+++.+-.+-...+..+++.|+.++|...+......+
T Consensus 233 ----~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 233 ----TKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred ----HHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 599999999999999999999999999988888889999999999999999998876655
No 127
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.34 E-value=1.2e-11 Score=101.08 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=72.5
Q ss_pred hHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 620 ERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 620 ~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
..|...+. ..+.+|+.|++ ||+|+.+.|+|++++.++++ +.|++||+|+.+++++.++|.++|||+||++|+-+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 35555554 35566667888 99999999999999999988 999999999999999999999999999999987653
Q ss_pred ---------eecCC--CHHHHHHHHH
Q 005125 695 ---------EIPGH--QCELLEKSVK 709 (713)
Q Consensus 695 ---------~~~g~--~~~~~~~~~~ 709 (713)
.+.+. +.+++.+.|+
T Consensus 83 ~d~gt~~~~k~~~~~~~k~~~idi~e 108 (114)
T cd02986 83 VDYGSPDHTKFVGSFKTKQDFIDLIE 108 (114)
T ss_pred EecCCCCCcEEEEEcCchhHHHHHHH
Confidence 23333 4566666554
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.33 E-value=5.4e-11 Score=103.30 Aligned_cols=102 Identities=16% Similarity=0.067 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
..+.++.+|..++..|++++|...|+-+..++|.+...|. ++|.++..+|+|++|+.+|.+|+.++|+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~------------gLG~~~Q~~g~~~~AI~aY~~A~~L~~d 101 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWF------------RLGECCQAQKHWGEAIYAYGRAAQIKID 101 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH------------HHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3457888999999999999999999999999999999998 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
++..++++|.|++.+|+.+.|.+.|+.++....+
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998643
No 129
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.32 E-value=6.1e-10 Score=132.06 Aligned_cols=291 Identities=14% Similarity=-0.019 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSK-----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------HR 328 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 328 (713)
.....+|..+...|++++|..+++++++..+.. ..++..+|.++...|++++|...+++++...... ..
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 455667888899999999999999999865542 2356788999999999999999999999764321 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC----CCh
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA--KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA----DSA 402 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~ 402 (713)
++..+|.++...|++++|..++++++. +...... ...........+..+...|++++|...+.+++.... ...
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQ-LIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 667889999999999999999999988 4322110 011112244567788889999999999999887532 223
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005125 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE 482 (713)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 482 (713)
...+..+|.++...|++++|...+.++..+........ .............+...|+.+.|..++.......+....
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHS---DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccH---hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch
Confidence 45667789999999999999999999866433211000 000111111234556689999999998776543322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 483 VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA------YNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 483 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
.. ...+..++.++...|++++|+..+++++.... ....++..+|.++...|+.++|...+.+|+++
T Consensus 689 ~~--------~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 689 FL--------QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred hH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 01123689999999999999999999987632 23567889999999999999999999999998
Q ss_pred CCCChH
Q 005125 557 MPSYSK 562 (713)
Q Consensus 557 ~p~~~~ 562 (713)
.....-
T Consensus 761 a~~~g~ 766 (903)
T PRK04841 761 ANRTGF 766 (903)
T ss_pred hCccch
Confidence 765443
No 130
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.31 E-value=2e-11 Score=103.84 Aligned_cols=84 Identities=25% Similarity=0.445 Sum_probs=74.8
Q ss_pred eeecchhHHHHHhhcC---CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 614 VFVSSNERFRHFVTSP---GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~~---~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
..+.. .+|...+... ..+++.|++ |++|+.+.|.+++++..++++.|++||+++. .+++.++|.++||+++|+
T Consensus 7 ~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~ 84 (113)
T cd02957 7 REISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLLVYK 84 (113)
T ss_pred EEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEEEE
Confidence 44544 7888877655 677778998 9999999999999999999999999999999 999999999999999999
Q ss_pred CCeEeeeecCC
Q 005125 689 NGSRVKEIPGH 699 (713)
Q Consensus 689 ~g~~~~~~~g~ 699 (713)
+|+.++++.|.
T Consensus 85 ~G~~v~~~~G~ 95 (113)
T cd02957 85 NGELIDNIVGF 95 (113)
T ss_pred CCEEEEEEecH
Confidence 99999999874
No 131
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.31 E-value=7e-11 Score=117.46 Aligned_cols=272 Identities=16% Similarity=0.152 Sum_probs=189.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005125 267 NEAYNKARFEDALALYDRAIAINSS-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEK 345 (713)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 345 (713)
+.++-.|+|..++..++ ....++. .......+.+++..+|+++..+...... .+....+...++..+...++-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence 45677899999998777 2233332 3456778899999999988777655432 23335666777777766567777
Q ss_pred HHHHHHHHhhhhcc-ccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHH
Q 005125 346 AVSHYKKSSSLANQ-KDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHD 424 (713)
Q Consensus 346 A~~~~~~al~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 424 (713)
++..++..+....+ .+. ...+..+.++...|++++|+..+.+. .+ .+.......+|+.+++++.|.+
T Consensus 85 ~l~~l~~~~~~~~~~~~~------~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~-lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 85 ALEELKELLADQAGESNE------IVQLLAATILFHEGDYEEALKLLHKG-----GS-LELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp HHHHHHHCCCTS---CHH------HHHHHHHHHHCCCCHHHHHHCCCTTT-----TC-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhccccccH------HHHHHHHHHHHHcCCHHHHHHHHHcc-----Cc-ccHHHHHHHHHHHcCCHHHHHH
Confidence 77777665541111 121 23445556666788999888877654 22 3677777899999999999999
Q ss_pred HhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005125 425 SYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG--RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL 502 (713)
Q Consensus 425 ~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~ 502 (713)
.++.+.+.+.+. .-+....+++....| ++.+|.-.|++.....+..+..++ .++.+
T Consensus 153 ~l~~~~~~~eD~----------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~ln------------g~A~~ 210 (290)
T PF04733_consen 153 ELKNMQQIDEDS----------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLN------------GLAVC 210 (290)
T ss_dssp HHHHHHCCSCCH----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHH------------HHHHH
T ss_pred HHHHHHhcCCcH----------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHH------------HHHHH
Confidence 999988776643 223333444555555 589999999998777677776665 58999
Q ss_pred HHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHHH
Q 005125 503 LFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQY-EKAVEDCTAALIVMPSYSKARL-EAAIQDYEMLI 576 (713)
Q Consensus 503 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~-~~A~~~~~~al 576 (713)
+..+|+|++|.+.+.+++..+|.+++++.|++.+...+|+. +.+.+++.+....+|+++...- .+....|.++.
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~~~~FD~~~ 286 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEKEAEFDRAV 286 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 6677788888888998876544 55555666554
No 132
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.29 E-value=2.6e-11 Score=100.44 Aligned_cols=90 Identities=32% Similarity=0.579 Sum_probs=81.3
Q ss_pred hHHHHHhhcC--CceEEEeec--CchhHHHHHHHHHHHHh-CCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 620 ERFRHFVTSP--GMAVVLFCS--KAEHKQVLQLMEQVCKR-FPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 620 ~~~~~~l~~~--~~~vv~f~~--cg~c~~~~~~~~~l~~~-~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
++|...+... ..+++.|++ |++|+.+.|.++++.+. ++.+.++.+|.+..+.++..++|.++||+++|.+|+.+.
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 82 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVD 82 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEE
Confidence 4677776665 677777888 99999999999999988 678999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHH
Q 005125 695 EIPGHQCELLEKSVK 709 (713)
Q Consensus 695 ~~~g~~~~~~~~~~~ 709 (713)
++.|.+++.|.++|+
T Consensus 83 ~~~g~~~~~l~~~~~ 97 (97)
T cd02984 83 RVSGADPKELAKKVE 97 (97)
T ss_pred EEeCCCHHHHHHhhC
Confidence 999999999998874
No 133
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=9.4e-09 Score=100.92 Aligned_cols=287 Identities=16% Similarity=0.072 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-HRAHHRLAMLY 337 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 337 (713)
+.....-|..-+..|+|.+|.....++-+..+....++..-+.+..++|+++.|-.++.++-+..++. ..+...++.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 34455667777788999999999999888888878888888899999999999999999999985443 56788899999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH----
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL---- 413 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~---- 413 (713)
...|++..|..-..++++ ..|.++ .........|...|+|...+..+.+.-+..--+.+++--.--.++
T Consensus 164 l~~~d~~aA~~~v~~ll~-~~pr~~------~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL 236 (400)
T COG3071 164 LNRRDYPAARENVDQLLE-MTPRHP------EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLL 236 (400)
T ss_pred HhCCCchhHHHHHHHHHH-hCcCCh------HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999 999886 455566778889999999998888877665433322211111111
Q ss_pred HHccCHHHH---HHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 414 LRLQRHQEA---HDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 414 ~~~g~~~~A---~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
....+-..+ ..+.+... ... ..++.+...++.-+...|+.++|.+..+++++..-+.. ..
T Consensus 237 ~q~~~~~~~~gL~~~W~~~p----r~l------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~------ 299 (400)
T COG3071 237 QQARDDNGSEGLKTWWKNQP----RKL------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC------ 299 (400)
T ss_pred HHHhccccchHHHHHHHhcc----HHh------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH------
Confidence 111111111 12222221 111 13466778889999999999999999999998765544 21
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----- 565 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----- 565 (713)
.-.-...-++...=++..++.++.+|+++..+..||.++.+.+.|.+|..+|+.|++..|+......
T Consensus 300 --------~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~ 371 (400)
T COG3071 300 --------RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL 371 (400)
T ss_pred --------HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 1122346788999999999999999999999999999999999999999999999999998654332
Q ss_pred ------HHHHHHHHHHHH
Q 005125 566 ------EAAIQDYEMLIR 577 (713)
Q Consensus 566 ------~~A~~~~~~al~ 577 (713)
.+|.+.++.++.
T Consensus 372 ~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 372 DQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 566666666653
No 134
>PTZ00051 thioredoxin; Provisional
Probab=99.28 E-value=4.1e-11 Score=99.42 Aligned_cols=94 Identities=28% Similarity=0.520 Sum_probs=85.1
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
+..+.+.+.|...+......++.|++ |++|+.+.+.++++.+.++++.|+.+|.+..+.++..++|.++||+++|++|
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCC
Confidence 34566677888888777888888999 9999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeecCCCHHHHHH
Q 005125 691 SRVKEIPGHQCELLEK 706 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~ 706 (713)
+.++++.|.+++.|.+
T Consensus 82 ~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 82 SVVDTLLGANDEALKQ 97 (98)
T ss_pred eEEEEEeCCCHHHhhc
Confidence 9999999998888764
No 135
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.28 E-value=5.3e-12 Score=119.93 Aligned_cols=232 Identities=14% Similarity=0.095 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 341 (713)
+...|+.|+++|.|++||.||.+++..+|.++..+.++|.+|+++.+|..|...|..|+.++..+..+|.+.|.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH---HHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 342 EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE---ARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
...+|.+.++.++. +.|+.......+......-+. .....-+-.|.+...++|. .-..|..+...|.
T Consensus 180 ~~~EAKkD~E~vL~-LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~---------~K~~G~~Fsk~~~ 249 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA-LEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILP---------IKKPGYKFSKKAM 249 (536)
T ss_pred hHHHHHHhHHHHHh-hCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhcc---------ccCcchhhhhhhc
Confidence 99999999999999 999975433322221110000 0000001111111111110 0112555566666
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
++.++.+|-+-+....+... +-.+ +..|.+..++++|+....+++..+|....... .
T Consensus 250 ~~~~i~~~~~~~A~~~~~~~----------L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s------------~ 306 (536)
T KOG4648|consen 250 RSVPVVDVVSPRATIDDSNQ----------LRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTS------------G 306 (536)
T ss_pred cccceeEeeccccccCcccc----------Cccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccC------------C
Confidence 66666666655443322111 1111 45556666666666666666665555443333 2
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
.|.+---.|...++...++.++.+.|.+
T Consensus 307 ~~~A~T~~~~~~E~K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 307 PPKAETIAKTSKEVKPTKQTAVKVAPAV 334 (536)
T ss_pred CchhHHHHhhhhhcCcchhheeeecccc
Confidence 4444444555666666666666666644
No 136
>PRK10996 thioredoxin 2; Provisional
Probab=99.27 E-value=5.5e-11 Score=104.83 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=85.7
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+...|...+.....+++.|++ |++|+.+.|.|+++...+ +.+.|+.+|++..+.++..++|.++||+++|++|+.+.
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~ 120 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVD 120 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEE
Confidence 456788887777788888999 999999999999999876 46899999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
.+.|. +.+.|.+||+++
T Consensus 121 ~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 121 MLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEcCCCCHHHHHHHHHHh
Confidence 99999 899999999875
No 137
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=1.8e-09 Score=103.40 Aligned_cols=269 Identities=12% Similarity=0.055 Sum_probs=160.9
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005125 268 EAYNKARFEDALALYDRAIAINSSKA-TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKA 346 (713)
Q Consensus 268 ~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 346 (713)
.+....||..|+.+++-.+..+.... ..-..+|.|++.+|+|++|+..|+-+.+.+.-+.+.+.+||.|++.+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 35567899999999998887655433 45566899999999999999999999887777789999999999999999999
Q ss_pred HHHHHHHhhhhccc-------------cH--------HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 005125 347 VSHYKKSSSLANQK-------------DI--------AKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQV 405 (713)
Q Consensus 347 ~~~~~~al~~~~p~-------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 405 (713)
...-.++-+ .|- +. ...+.....+.++.+......|++|++.|++.+.-+|+.. .+
T Consensus 111 ~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~-al 187 (557)
T KOG3785|consen 111 KSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI-AL 187 (557)
T ss_pred HHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh-hh
Confidence 987766644 111 00 0111222334444455555556666666666665555543 33
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ-IDPNNKEVI 484 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~ 484 (713)
-..++.||.++.-|+-+.+.+.--+...|+ +..+....+..+++.=.-..|..-...... .+...+..-
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q~pd----------StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQFPD----------STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhCCC----------cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 444556666666665555555555554443 223334444443332221111111111111 011111111
Q ss_pred HHHH-----------------HHH--HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005125 485 KGVK-----------------MAK--AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEK 545 (713)
Q Consensus 485 ~~~~-----------------~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 545 (713)
.+.+ .+. -.++..++...|.++++..+|+...+ +++|..|.-|...|.++..+|+--.
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcC
Confidence 1000 000 03344577777888888888887755 4778888888888888888887554
Q ss_pred HHHHHHH
Q 005125 546 AVEDCTA 552 (713)
Q Consensus 546 A~~~~~~ 552 (713)
..+.++.
T Consensus 335 SreHlKi 341 (557)
T KOG3785|consen 335 SREHLKI 341 (557)
T ss_pred cHHHHHH
Confidence 4444443
No 138
>PTZ00062 glutaredoxin; Provisional
Probab=99.25 E-value=4.9e-11 Score=110.33 Aligned_cols=87 Identities=20% Similarity=0.391 Sum_probs=78.1
Q ss_pred chhHHHHHhhcC-CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSP-GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+.+++...+... +..++.|++ |++|+++.++++++++.||.+.|+.||.| ++|.++|||+||++|+.++
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCEEEe
Confidence 456777777654 777778878 99999999999999999999999999988 8999999999999999999
Q ss_pred eecCCCHHHHHHHHHhhh
Q 005125 695 EIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~~~~~~~~~~~~~~ 712 (713)
++.|+++.+|..+|+++.
T Consensus 77 r~~G~~~~~~~~~~~~~~ 94 (204)
T PTZ00062 77 SLEGCNTSTLVSFIRGWA 94 (204)
T ss_pred eeeCCCHHHHHHHHHHHc
Confidence 999999999999998763
No 139
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.25 E-value=4.4e-11 Score=99.73 Aligned_cols=90 Identities=21% Similarity=0.281 Sum_probs=80.5
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+..+|...+.....+++.|++ |++|+++.|.|+++++.+. .+.|+.||+++.+.++..++|.++||+++|++|+.+.
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 86 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPE 86 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCcc
Confidence 355788877767778888999 9999999999999999984 5789999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHH
Q 005125 695 EIPGH-QCELLEKS 707 (713)
Q Consensus 695 ~~~g~-~~~~~~~~ 707 (713)
++.|. +.+.|.+|
T Consensus 87 ~~~G~~~~~~l~~f 100 (101)
T cd03003 87 KYYGDRSKESLVKF 100 (101)
T ss_pred cCCCCCCHHHHHhh
Confidence 99998 88888765
No 140
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.24 E-value=1.6e-10 Score=119.41 Aligned_cols=101 Identities=28% Similarity=0.394 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
-+...|..++..|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+..+++++.++|+++.+|+.+|.+|..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhccccH
Q 005125 341 GEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|++++|+.+|++++. ++|++.
T Consensus 84 g~~~eA~~~~~~al~-l~P~~~ 104 (356)
T PLN03088 84 EEYQTAKAALEKGAS-LAPGDS 104 (356)
T ss_pred CCHHHHHHHHHHHHH-hCCCCH
Confidence 999999999999999 999985
No 141
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.24 E-value=5e-11 Score=99.88 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=78.4
Q ss_pred hhHHHHH---hhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhH-HHcCCCcccEEEEEECCe
Q 005125 619 NERFRHF---VTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIA-KSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 619 ~~~~~~~---l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~-~~~~v~~~Pt~~~~~~g~ 691 (713)
...|... +.....+++.|++ |++|+.+.|.++++++.+. .+.|++||++..+.++ ..++|.++||+.+|++|+
T Consensus 16 ~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc
Confidence 3456654 4667788888999 9999999999999999885 4899999999999998 589999999999999999
Q ss_pred EeeeecCC-CHHHHHHHH
Q 005125 692 RVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~ 708 (713)
....+.|. +.+.|..|+
T Consensus 96 ~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 96 GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cceEEeCCCCHHHHHhhC
Confidence 88899999 899988763
No 142
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.24 E-value=1.3e-09 Score=109.78 Aligned_cols=162 Identities=22% Similarity=0.227 Sum_probs=123.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|....+++-.+..++..|++++|+..++..+...|+++.++...+.++...++..+|++.+++++.++|+....+.++
T Consensus 301 ~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred hCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 44566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
|.+|.+.|++.+|+..++..+. -+|++ +..|..++..|
T Consensus 381 a~all~~g~~~eai~~L~~~~~-~~p~d-----------------------------------------p~~w~~LAqay 418 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLF-NDPED-----------------------------------------PNGWDLLAQAY 418 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhh-cCCCC-----------------------------------------chHHHHHHHHH
Confidence 7777777777777777777776 66665 48888899999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 484 (713)
..+|+..+|... .+..|...|++++|+..+..+.+...-+...|
T Consensus 419 ~~~g~~~~a~~A---------------------------~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 419 AELGNRAEALLA---------------------------RAEGYALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred HHhCchHHHHHH---------------------------HHHHHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 999877665543 47778889999999999999988764444444
No 143
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.22 E-value=1e-10 Score=98.87 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=80.6
Q ss_pred hhHHHHHh-h--cCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 619 NERFRHFV-T--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 619 ~~~~~~~l-~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
...|...+ . ....+++.|++ |++|+.+.|.++++.+.++ ++.++.||++..+.++..++|.++||+++|++|+
T Consensus 11 ~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~ 90 (111)
T cd02963 11 FSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQ 90 (111)
T ss_pred HHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCE
Confidence 34565433 2 45678888999 9999999999999999884 5899999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHh
Q 005125 692 RVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~ 710 (713)
.+..+.|. +.+.|.++|++
T Consensus 91 ~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 91 VTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEEEecCCCCHHHHHHHHhc
Confidence 99999998 89999999986
No 144
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.21 E-value=1.2e-10 Score=96.19 Aligned_cols=89 Identities=25% Similarity=0.443 Sum_probs=77.8
Q ss_pred HHHHHhh-c-CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeee
Q 005125 621 RFRHFVT-S-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKE 695 (713)
Q Consensus 621 ~~~~~l~-~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 695 (713)
.|.+.+. . .+.+++.|++ |++|+.+.|.++++...++ .+.++.||++..+.++..++|.++||+++|.+|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 3455453 3 3467777888 9999999999999998885 47899999999999999999999999999999999999
Q ss_pred ecCC-CHHHHHHHHH
Q 005125 696 IPGH-QCELLEKSVK 709 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~ 709 (713)
+.|. +.+.|.+||+
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 9999 8999999874
No 145
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.21 E-value=5e-09 Score=101.71 Aligned_cols=185 Identities=11% Similarity=0.014 Sum_probs=142.4
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATY---RSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRA 329 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 329 (713)
..++..++..|..++..|+|++|+..|++++...|....+ .+.+|.+|...+++++|+..+++.++.+|++ +.+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3577889999999999999999999999999999988654 5899999999999999999999999999887 568
Q ss_pred HHHHHHHHHHcC---------------C---HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 005125 330 HHRLAMLYFRLG---------------E---AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKET 391 (713)
Q Consensus 330 ~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 391 (713)
++.+|.++..++ + ..+|+..|++.++ ..|+.......-.. +..+
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~-~yP~S~ya~~A~~r-----------------l~~l 170 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR-GYPNSQYTTDATKR-----------------LVFL 170 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH-HCcCChhHHHHHHH-----------------HHHH
Confidence 899998875554 1 3467888888888 88876422211100 0000
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 392 QNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQ 471 (713)
Q Consensus 392 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 471 (713)
+..+ ..--+.+|..|.+.|.|..|+.-++.++...|+.. ...+++..++..|..+|..++|.....
T Consensus 171 ~~~l-------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~-------~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 171 KDRL-------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ-------ATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHH-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 0000 12233568889999999999999999988777643 357788999999999999999987665
Q ss_pred H
Q 005125 472 D 472 (713)
Q Consensus 472 ~ 472 (713)
.
T Consensus 237 ~ 237 (243)
T PRK10866 237 I 237 (243)
T ss_pred H
Confidence 4
No 146
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.19 E-value=6.2e-10 Score=110.71 Aligned_cols=250 Identities=22% Similarity=0.189 Sum_probs=172.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 005125 301 AALIGLGRQIEALVECKEAIRIDPC-YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379 (713)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~ 379 (713)
+-++..|+|..++..++ ....++. .......+.++|..+|+++..+...... -.|.. .+....+..+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l-------~av~~la~y~~ 77 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPEL-------QAVRLLAEYLS 77 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCC-------HHHHHHHHHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhH-------HHHHHHHHHHh
Confidence 44667899999998777 3333332 3567788899999999998776554332 22332 12222222222
Q ss_pred HhhcHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHH
Q 005125 380 ELKRWNDLLKETQNVISFGAD-SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYI 458 (713)
Q Consensus 380 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 458 (713)
...+-+.++..++..+..... ..+.+....|.++...|++++|++.+.+.- +.+.......+|.
T Consensus 78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~---------------~lE~~al~Vqi~L 142 (290)
T PF04733_consen 78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG---------------SLELLALAVQILL 142 (290)
T ss_dssp TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT---------------CHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC---------------cccHHHHHHHHHH
Confidence 223455566665554433322 334566667888989999999999998751 3446666788999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005125 459 AAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKAS--KYKEACYAYSEGLEHEAYNSVLLCNRAAC 536 (713)
Q Consensus 459 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~ 536 (713)
.+++++.|.+.++.+-+.+.+..-... ..+++.+..| ++.+|...|++..+..+..+..+..+|.|
T Consensus 143 ~~~R~dlA~k~l~~~~~~~eD~~l~qL------------a~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQIDEDSILTQL------------AEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp HTT-HHHHHHHHHHHHCCSCCHHHHHH------------HHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCcHHHHHH------------HHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 999999999999998887766443332 3445555555 69999999999988888899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHH-------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 537 RSKLGQYEKAVEDCTAALIVMPSYSKARL-------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 537 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~-------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
++.+|+|++|...+++++..+|.+++++. +.+.+++.+....+|+++-+...
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999999999998776 44667777777788888765433
No 147
>PRK09381 trxA thioredoxin; Provisional
Probab=99.19 E-value=3.5e-10 Score=95.81 Aligned_cols=93 Identities=17% Similarity=0.340 Sum_probs=82.6
Q ss_pred hHHHHH-hhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeee
Q 005125 620 ERFRHF-VTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKE 695 (713)
Q Consensus 620 ~~~~~~-l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 695 (713)
+.|... +.....+++.|++ |++|+.+.|.++++++.+ +.+.++.+|++..+.++..++|.++||+++|.+|+.+.+
T Consensus 11 ~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 90 (109)
T PRK09381 11 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 90 (109)
T ss_pred hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEEE
Confidence 466654 4446677888988 999999999999999998 458999999999999999999999999999999999999
Q ss_pred ecCC-CHHHHHHHHHhhh
Q 005125 696 IPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~~ 712 (713)
+.|. +.++|..+|+++.
T Consensus 91 ~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 91 KVGALSKGQLKEFLDANL 108 (109)
T ss_pred ecCCCCHHHHHHHHHHhc
Confidence 9999 9999999998764
No 148
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.9e-09 Score=100.99 Aligned_cols=217 Identities=18% Similarity=0.063 Sum_probs=150.7
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 269 AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVS 348 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 348 (713)
+.+..+|.+||+++..-.+..|.+-..+..+|.||+...+|..|..+|++.-.+.|.........|..++..+.+.+|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999998999999999999999998
Q ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhc
Q 005125 349 HYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK 428 (713)
Q Consensus 349 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 428 (713)
....... - +.-. ......-+.+....+++..+....++
T Consensus 100 V~~~~~D-~-~~L~----------------------------------------~~~lqLqaAIkYse~Dl~g~rsLveQ 137 (459)
T KOG4340|consen 100 VAFLLLD-N-PALH----------------------------------------SRVLQLQAAIKYSEGDLPGSRSLVEQ 137 (459)
T ss_pred HHHHhcC-C-HHHH----------------------------------------HHHHHHHHHHhcccccCcchHHHHHh
Confidence 8876654 1 1110 01112223333344444444444443
Q ss_pred cccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 005125 429 SPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASK 508 (713)
Q Consensus 429 al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 508 (713)
.... ..+....+.|.+.++.|++++|++-|+.|++...-++..-+ +++.+.++.++
T Consensus 138 lp~e------------n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAY------------niALaHy~~~q 193 (459)
T KOG4340|consen 138 LPSE------------NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAY------------NLALAHYSSRQ 193 (459)
T ss_pred ccCC------------CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHH------------HHHHHHHhhhh
Confidence 3211 23445566677777777777777777777766555544433 56777777777
Q ss_pred HHHHHHHHHHHhcc----CCCC-------------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 509 YKEACYAYSEGLEH----EAYN-------------------------SVLLCNRAACRSKLGQYEKAVEDCT 551 (713)
Q Consensus 509 ~~~A~~~~~~al~~----~p~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~ 551 (713)
++.|+++..+.++. +|+. .+++...+.++.+.|+++.|.+.+.
T Consensus 194 yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 194 YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 77777666655542 2211 3445566778888888888877654
No 149
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.18 E-value=8.6e-11 Score=97.04 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=72.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-CcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHH
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE-DHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELL 704 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~ 704 (713)
...+++.|++ |++|+.+.|.|+++++.++++.++.||.+ ..+.++..++|.++||+++|++| .+.++.|. +.+.|
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~~l 96 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLDSL 96 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHHHH
Confidence 3456777999 99999999999999999988999999999 89999999999999999999999 88899998 99999
Q ss_pred HHHH
Q 005125 705 EKSV 708 (713)
Q Consensus 705 ~~~~ 708 (713)
.+||
T Consensus 97 ~~f~ 100 (100)
T cd02999 97 AAFY 100 (100)
T ss_pred HhhC
Confidence 8875
No 150
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.18 E-value=7.6e-10 Score=111.00 Aligned_cols=196 Identities=22% Similarity=0.220 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 005125 308 RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDL 387 (713)
Q Consensus 308 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A 387 (713)
++++|...|++| |.+|...+++++|.++|.++.. +.-. .++...|
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~-~~~~--------------------~~~~~~A 74 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAAD-CYEK--------------------LGDKFEA 74 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHH-HHHH--------------------TT-HHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHH-HHHH--------------------cCCHHHH
Confidence 566666655554 6677777888888888888766 2221 1121112
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc-CCHHHH
Q 005125 388 LKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA-GRFEDA 466 (713)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A 466 (713)
...|...+.+|... ++++|+.+|++|+.+...... ....+.++..+|.+|... |++++|
T Consensus 75 ---------------a~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~----~~~aA~~~~~lA~~ye~~~~d~e~A 134 (282)
T PF14938_consen 75 ---------------AKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR----FSQAAKCLKELAEIYEEQLGDYEKA 134 (282)
T ss_dssp ---------------HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-----HHHHHHHHHHHHHHHCCTT--HHHH
T ss_pred ---------------HHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 13333334444444 666666666666554322111 012355677789999998 999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHH
Q 005125 467 VKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN-------SVLLCNRAACRSK 539 (713)
Q Consensus 467 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~ 539 (713)
+++|++|+.+......... ....+..+|.++...|+|++|++.|++.....-++ ...++..+.|++.
T Consensus 135 i~~Y~~A~~~y~~e~~~~~------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 135 IEYYQKAAELYEQEGSPHS------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHH------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhh------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 9999999987433322221 12344579999999999999999999988653211 2456778899999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 540 LGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 540 ~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.||+..|...+++....+|.+...+
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 9999999999999999999775443
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.17 E-value=3.9e-10 Score=116.55 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH
Q 005125 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL 529 (713)
Q Consensus 450 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 529 (713)
+...|..++..|++++|+.+|+++++++|++..++. ++|.++..+|++++|+..+++++.++|+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~------------~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYA------------DRAQANIKLGNFTEAVADANKAIELDPSLAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 455689999999999999999999999999999887 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 530 LCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 530 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|+.+|.+|..+|++++|+..|+++++++|++..+..
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999999987765
No 152
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.16 E-value=2.1e-10 Score=96.29 Aligned_cols=91 Identities=13% Similarity=0.268 Sum_probs=79.3
Q ss_pred chhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC-eE
Q 005125 618 SNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG-SR 692 (713)
Q Consensus 618 ~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g-~~ 692 (713)
+..+|...+.. ...+++.|++ |++|+.+.|.++++++.+ +.+.|+.||++..+.++..++|.++||+++|++| +.
T Consensus 7 ~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 86 (104)
T cd03004 7 TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASK 86 (104)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCC
Confidence 34578877654 4467777888 999999999999999987 4589999999999999999999999999999998 88
Q ss_pred eeeecCC-C-HHHHHHHH
Q 005125 693 VKEIPGH-Q-CELLEKSV 708 (713)
Q Consensus 693 ~~~~~g~-~-~~~~~~~~ 708 (713)
+.++.|. + .+.|.+||
T Consensus 87 ~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 87 YHSYNGWHRDADSILEFI 104 (104)
T ss_pred ceEccCCCCCHHHHHhhC
Confidence 9999998 6 89988875
No 153
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.16 E-value=4.3e-09 Score=99.82 Aligned_cols=179 Identities=17% Similarity=0.144 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAH 330 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 330 (713)
.+++.++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.++...|++++|+..+++.+...|++ ..++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 456789999999999999999999999999998875 5789999999999999999999999999999987 5689
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 331 HRLAMLYFRLG-----------EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 331 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
+.+|.++..+. ...+|+..|+..+. ..|+.......-.. +..+...+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~-~yP~S~y~~~A~~~-----------------l~~l~~~l---- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK-RYPNSEYAEEAKKR-----------------LAELRNRL---- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH-H-TTSTTHHHHHHH-----------------HHHHHHHH----
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH-HCcCchHHHHHHHH-----------------HHHHHHHH----
Confidence 99999876653 23478888888888 77776422111100 00011111
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHH
Q 005125 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAV 467 (713)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 467 (713)
..--+.+|..|.+.|.+..|+..++.+++..|+... ...++..++.+|..+|..+.|.
T Consensus 141 ---a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~-------~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 141 ---AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA-------AEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp ---HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH-------HHHHHHHHHHHHHHTT-HHHHH
T ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch-------HHHHHHHHHHHHHHhCChHHHH
Confidence 123344688899999999999999999888776543 3568888899999999888553
No 154
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=9.3e-09 Score=103.71 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 290 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|....++|..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|.+.+++++. ++|..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~-l~P~~ 373 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA-LDPNS 373 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCc
Confidence 566667777777777777777777777777777777777777777777777777777777777777 66654
No 155
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.15 E-value=1.7e-09 Score=104.05 Aligned_cols=290 Identities=18% Similarity=0.127 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRI----DPC--YHRA 329 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~ 329 (713)
+...+..|..++...++++|+..+.+.+..-.+. ...+-.+..++..+|.|++++.+.-..+.. +.. ..++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999998764432 345556677888899999988776554443 211 2578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-----hHH
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS-----APQ 404 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~ 404 (713)
+.+++..+....++.+++.+..-.+. +...... .......+.++..+..++.|+++++.|+.+++..... .-.
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~-lpgt~~~-~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLG-LPGTRAG-QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-CCCCCcc-cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 89999999999999999988887776 4333321 1223566778889999999999999999999874332 226
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN--NKE 482 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~ 482 (713)
++..+|..+..+.|+++|+-+..+|.++.....-.-+.......+++.++..+..+|+.-.|.++.+++.++.-. +..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 888999999999999999999999987654432111112234667889999999999999999999999876322 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCCHHH-----HHHHHH
Q 005125 483 VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY------NSVLLCNRAACRSKLGQYEK-----AVEDCT 551 (713)
Q Consensus 483 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~ 551 (713)
.+ ...+.-+|++|...|+.+.|..-|+.|...... ...++...|.++....-..+ |+++-+
T Consensus 244 ~~--------arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~ 315 (518)
T KOG1941|consen 244 LQ--------ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNT 315 (518)
T ss_pred HH--------HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 22 223446999999999999999999999865321 24556666666655544444 777777
Q ss_pred HHHHhCC
Q 005125 552 AALIVMP 558 (713)
Q Consensus 552 ~al~~~p 558 (713)
+++++..
T Consensus 316 r~levA~ 322 (518)
T KOG1941|consen 316 RLLEVAS 322 (518)
T ss_pred HHHHHHH
Confidence 7777643
No 156
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.14 E-value=4e-10 Score=95.33 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=76.0
Q ss_pred HHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee--eec
Q 005125 622 FRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK--EIP 697 (713)
Q Consensus 622 ~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~--~~~ 697 (713)
+...+......++.|++ |++|+.+.|++++++..++.+.|..+|+++.+.++..++|.++||+++|++|.... ++.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~ 94 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYY 94 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEE
Confidence 44444444556666776 99999999999999988888999999999999999999999999999999876655 678
Q ss_pred CC-CHHHHHHHHHhh
Q 005125 698 GH-QCELLEKSVKLY 711 (713)
Q Consensus 698 g~-~~~~~~~~~~~~ 711 (713)
|. +..++.++|+..
T Consensus 95 G~~~~~el~~~i~~i 109 (113)
T cd02975 95 GLPAGYEFASLIEDI 109 (113)
T ss_pred ecCchHHHHHHHHHH
Confidence 88 788999998764
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.13 E-value=1.6e-09 Score=100.23 Aligned_cols=119 Identities=15% Similarity=0.226 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
+..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.++++++...|++..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4556679999999999999999999999999987653 5689999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
+|.+|...|+...+...+..++. .+.+|++.+++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~---------------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA---------------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH---------------------------HHHHHHHHHHHHHhhCchh
Confidence 99999999998887777666654 3667778888888888775
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.13 E-value=2.4e-10 Score=87.68 Aligned_cols=67 Identities=24% Similarity=0.472 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-RQIEALVECKEAIRIDP 324 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 324 (713)
++..|..+|..++..|+|++|+.+|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56677888888888888888888888888888888888888888888887 68888888888887776
No 159
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.13 E-value=1.6e-09 Score=100.33 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=80.9
Q ss_pred ccccccceeecchhHHHHHhhcC---CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTSP---GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~~---~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
.+||.... + +...|...+... ..+|+.|++ |++|+.+.|.|++++.+||.+.|++||++.+ ...++|..+
T Consensus 79 ~~~G~v~e-i-s~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~l 153 (192)
T cd02988 79 SKFGEVYE-I-SKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNL 153 (192)
T ss_pred CCCCeEEE-e-CHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCC
Confidence 46775443 3 456777655433 257777888 9999999999999999999999999999864 578999999
Q ss_pred cEEEEEECCeEeeeecCC--------CHHHHHHHHHhh
Q 005125 682 PAFKIYKNGSRVKEIPGH--------QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 711 (713)
|||++|++|+.++++.|. +.+.|+.+|.++
T Consensus 154 PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 154 PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 999999999999999874 677888877654
No 160
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.12 E-value=6.9e-10 Score=93.89 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=78.8
Q ss_pred HHHHHhhcCCceEEEeec----CchhHHHHHHHHHHHHhCC-C-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 621 RFRHFVTSPGMAVVLFCS----KAEHKQVLQLMEQVCKRFP-S-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~----cg~c~~~~~~~~~l~~~~p-~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.+..++...+..+++|.. +..+.-+.=++++++++|+ . +.|++||+|+.+.++.+|||+++||+++|++|+.++
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~ 105 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRG 105 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEE
Confidence 444555666777766666 4666777888999999997 3 899999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.+.++|+++.
T Consensus 106 ~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 106 VLNGIHPWAELINLMRGLV 124 (132)
T ss_pred EEeCcCCHHHHHHHHHHHh
Confidence 99999 9999999998763
No 161
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.12 E-value=3e-07 Score=95.22 Aligned_cols=302 Identities=14% Similarity=0.144 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------------------------------------------
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINS------------------------------------------------- 290 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------------------------------------- 290 (713)
..|..+|..|.+.|.+++|...|++++..--
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 3688899999999999999999999876421
Q ss_pred ------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHcCCHHHH
Q 005125 291 ------------------SKATYRSNKSAALIGLGRQIEALVECKEAIR-IDPCY-----HRAHHRLAMLYFRLGEAEKA 346 (713)
Q Consensus 291 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A 346 (713)
++..-|..+ +-+..|+..+-+..|..|+. .+|.. ...|..+|..|...|+.+.|
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 111111111 11123445555555555554 24432 35566677777777777777
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC-----------------ChHHHHHHH
Q 005125 347 VSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD-----------------SAPQVYALQ 409 (713)
Q Consensus 347 ~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----------------~~~~~~~~l 409 (713)
...|+++.. ..=... ......|+..+..-....+++.|+...+++...-.. ....+|...
T Consensus 407 Rvifeka~~-V~y~~v--~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 407 RVIFEKATK-VPYKTV--EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHhhc-CCccch--HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 777777765 322111 122344556666666666777777766666543111 012445555
Q ss_pred HHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 005125 410 AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID--PNNKEVIKGV 487 (713)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 487 (713)
+......|-++.....|++.+.+.- ..+.+..+.|..+....-+++|.+.|++.+.+. |.-.+.|..+
T Consensus 484 ~DleEs~gtfestk~vYdriidLri----------aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRI----------ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 6666666666666666666665433 234456666777777777777777777777653 4445555431
Q ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHH
Q 005125 488 KMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN-S-VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS-KAR 564 (713)
Q Consensus 488 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~ 564 (713)
.......+.--+.+.|...|++|++..|.. + ..|...|..-..-|-...|+..|++|-..-+... ...
T Consensus 554 ---------Ltkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~m 624 (835)
T KOG2047|consen 554 ---------LTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDM 624 (835)
T ss_pred ---------HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 122333334456777888888888776632 2 2344556666667777778888877655433221 111
Q ss_pred H-------------HHHHHHHHHHHHhCCCCHHH
Q 005125 565 L-------------EAAIQDYEMLIREIPGNEEV 585 (713)
Q Consensus 565 ~-------------~~A~~~~~~al~~~p~~~~~ 585 (713)
+ ..-...|++|++.-|+....
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r 658 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAR 658 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHH
Confidence 1 33457788888888876543
No 162
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.11 E-value=3.8e-09 Score=101.63 Aligned_cols=284 Identities=15% Similarity=0.072 Sum_probs=204.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINS----S--KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-----HRAH 330 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 330 (713)
+-.+..+...+|.|++++.+--..+...- . ..+++.+++..+...-++.+++.+.+-.+.+.... ..++
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~ 125 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS 125 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence 44455666677777777665444443321 1 24678899999999999999999998888763322 4677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC----C-----
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD----S----- 401 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~----- 401 (713)
..+|.++..++.++++++.|++|++ +..++.+....+.....++..+..+.++++|+....++.++... +
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~-~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALR-YAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHH-HhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 7899999999999999999999998 76666666666778888899999999999999988888766321 1
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 402 APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
...+++.++..+..+|....|.++.+++.++.-...+.. ..+..+..+|.+|...|+.+.|..-|++|......-.
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra----~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA----LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG 280 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH----HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence 124566788999999999999999999988765544322 3466788899999999999999999999987543322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHH-----HHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 482 EVIKGVKMAKAMASARLRGNLLFKASKYK-----EACYAYSEGLEHEAYN------SVLLCNRAACRSKLGQYEKAVEDC 550 (713)
Q Consensus 482 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 550 (713)
+-.. ++.++...+.++....-.. .|+++-++++++...- -..+..++.+|..+|.-++=-..+
T Consensus 281 drmg------qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~ 354 (518)
T KOG1941|consen 281 DRMG------QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHV 354 (518)
T ss_pred hhHH------HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 2111 1222334455544443333 3888888888775432 456889999999999888777777
Q ss_pred HHHHHh
Q 005125 551 TAALIV 556 (713)
Q Consensus 551 ~~al~~ 556 (713)
..+-+.
T Consensus 355 ~ra~~~ 360 (518)
T KOG1941|consen 355 VRAHEC 360 (518)
T ss_pred HHHHHH
Confidence 665543
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.11 E-value=3.3e-08 Score=95.96 Aligned_cols=196 Identities=10% Similarity=-0.027 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRA---HHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 368 (713)
.+..++..|..+...|+|++|+..|++++...|....+ .+.+|.+|+..+++++|+..|++.++ ..|+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~-~~P~~~------ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR-LNPTHP------ 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCcCCC------
Confidence 46667778888888888888888888888888876443 47788888888888888888888888 777763
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHH
Q 005125 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAY 448 (713)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (713)
..+.+++.+|.++...++- .+..-..++.
T Consensus 104 --------------------------------~~~~a~Y~~g~~~~~~~~~-----~~~~~~~~~~-------------- 132 (243)
T PRK10866 104 --------------------------------NIDYVLYMRGLTNMALDDS-----ALQGFFGVDR-------------- 132 (243)
T ss_pred --------------------------------chHHHHHHHHHhhhhcchh-----hhhhccCCCc--------------
Confidence 1235666666655443211 1111111111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGV---KMAKA--MASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~---~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
.........+|+..|++.++..|+...+-... ..++. ...-...|..|++.|.|..|+.-++.+++..
T Consensus 133 -------~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y 205 (243)
T PRK10866 133 -------SDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY 205 (243)
T ss_pred -------cccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC
Confidence 00112234678899999999999986443322 22211 3334468999999999999999999999998
Q ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 524 AYN---SVLLCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 524 p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
|+. .++++.++..|..+|..++|......
T Consensus 206 p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 206 PDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred CCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 865 67899999999999999999887654
No 164
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.11 E-value=6.7e-10 Score=92.63 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=77.4
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.+.|...+. +..++.|++ |++|+.+.|.+++++..+. ++.++.+|+++.+.++..++|.++||+++|++|+ +.
T Consensus 8 ~~~f~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~ 84 (101)
T cd02994 8 DSNWTLVLE--GEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV-FR 84 (101)
T ss_pred hhhHHHHhC--CCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC-EE
Confidence 457777663 347888998 9999999999999998763 5899999999999999999999999999999997 57
Q ss_pred eecCC-CHHHHHHHHHh
Q 005125 695 EIPGH-QCELLEKSVKL 710 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~ 710 (713)
++.|. +.+.|.++|++
T Consensus 85 ~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 85 RYQGPRDKEDLISFIEE 101 (101)
T ss_pred EecCCCCHHHHHHHHhC
Confidence 88898 99999999874
No 165
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.11 E-value=7.7e-10 Score=91.28 Aligned_cols=83 Identities=22% Similarity=0.452 Sum_probs=74.4
Q ss_pred hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHH
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCE 702 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~ 702 (713)
...+.+++.|++ |+.|+.+.|.++++.+.++ .+.++.+|++..+.++..++|.++|++++|++|+.+.++.|. +.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~ 90 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS 90 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence 345566777887 9999999999999998884 589999999999999999999999999999999999999999 889
Q ss_pred HHHHHHH
Q 005125 703 LLEKSVK 709 (713)
Q Consensus 703 ~~~~~~~ 709 (713)
.|.++|+
T Consensus 91 ~~~~~l~ 97 (97)
T cd02949 91 EYREFIE 97 (97)
T ss_pred HHHHhhC
Confidence 9988874
No 166
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.10 E-value=6.8e-10 Score=98.08 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=70.8
Q ss_pred hhHHHHHhhc--CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCc------ccEEEE
Q 005125 619 NERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSS------IPAFKI 686 (713)
Q Consensus 619 ~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~------~Pt~~~ 686 (713)
.++|...+.. ...+++.|++ |++|+++.|.++++++.++ ++.|++||+++.+.++..++|.+ +||+++
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEE
Confidence 4578877643 3467788999 9999999999999999874 49999999999999999999998 999999
Q ss_pred EECCeEeeeecC
Q 005125 687 YKNGSRVKEIPG 698 (713)
Q Consensus 687 ~~~g~~~~~~~g 698 (713)
|++|+++++++|
T Consensus 115 f~~Gk~v~r~~G 126 (152)
T cd02962 115 FQGGKEVARRPY 126 (152)
T ss_pred EECCEEEEEEec
Confidence 999999999997
No 167
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=9.2e-07 Score=91.79 Aligned_cols=201 Identities=13% Similarity=0.142 Sum_probs=150.5
Q ss_pred hcHHHHHHHHHHHHHc-CCC----ChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHH
Q 005125 382 KRWNDLLKETQNVISF-GAD----SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQV 456 (713)
Q Consensus 382 ~~~~~A~~~~~~al~~-~p~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~ 456 (713)
++..+-+..|..+++. +|. ....+|...|..|...|+.+.|...|+++.+..-...+ .-+.+|+.-|..
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~------dLa~vw~~waem 434 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE------DLAEVWCAWAEM 434 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH------HHHHHHHHHHHH
Confidence 4455556666666543 443 33478899999999999999999999999887543332 346789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH
Q 005125 457 YIAAGRFEDAVKTAQDAAQIDPNNKE---------VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS 527 (713)
Q Consensus 457 ~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 527 (713)
-+...+++.|+.+.+.|... |..+. +...+ -+.+..|...+......|-++.-...|++.+++.--.|
T Consensus 435 Elrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rl--hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 435 ELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARL--HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred HHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHH--HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 99999999999999998764 33322 11111 12244455678888888999999999999999988889
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHH---------------HHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 528 VLLCNRAACRSKLGQYEKAVEDCTAALIVMP--SYSKARL---------------EAAIQDYEMLIREIPGNEEVGRALF 590 (713)
Q Consensus 528 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~---------------~~A~~~~~~al~~~p~~~~~~~~l~ 590 (713)
....|.|..+....-+++|.+.|++.+.+.+ .-.+.|. +.|...|++||+..| ++....++
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp--p~~aKtiy 589 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP--PEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--HHHHHHHH
Confidence 9999999999999999999999999998864 3334444 889999999999888 44444444
Q ss_pred HHH
Q 005125 591 EAQ 593 (713)
Q Consensus 591 ~~~ 593 (713)
...
T Consensus 590 LlY 592 (835)
T KOG2047|consen 590 LLY 592 (835)
T ss_pred HHH
Confidence 333
No 168
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.10 E-value=6.8e-10 Score=93.79 Aligned_cols=91 Identities=22% Similarity=0.397 Sum_probs=78.0
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHh----CC---CcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKR----FP---SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~----~p---~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+.+.|...+.....+++.|++ |++|+.+.|.++++++. ++ .+.++.||++..+.++..++|.++||+.+|+
T Consensus 7 ~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~ 86 (108)
T cd02996 7 TSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFR 86 (108)
T ss_pred CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEe
Confidence 356788877777778888999 99999999999998865 33 3789999999999999999999999999999
Q ss_pred CCeE-eeeecCC-CHHHHHHHH
Q 005125 689 NGSR-VKEIPGH-QCELLEKSV 708 (713)
Q Consensus 689 ~g~~-~~~~~g~-~~~~~~~~~ 708 (713)
+|+. .....|. +.+.|.+||
T Consensus 87 ~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 87 NGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCcCcceecCCCCCHHHHHhhC
Confidence 9984 4777888 889988875
No 169
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=2.9e-09 Score=92.02 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHR 332 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 332 (713)
+++++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+.+|++++..+|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 5789999999999999999999999999998885 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+|.++..+|++++|+.++.+++. ..|++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~-~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK-RYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH-HCcCCh
Confidence 99999999999999999999999 888875
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.09 E-value=4.9e-09 Score=96.89 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=106.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 524 (713)
..+..++.+|..+...|++++|+.+|++++...|+..... ..+.++|.++...|++++|+..|++++...|
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRS---------YILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3566899999999999999999999999999887654211 1223799999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCCCH
Q 005125 525 YNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNE 583 (713)
Q Consensus 525 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~~~ 583 (713)
.+...+..+|.++..+|+...|...++.++. .+++|++.|++++.++|++.
T Consensus 104 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~--------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 104 KQPSALNNIAVIYHKRGEKAEEAGDQDEAEA--------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred ccHHHHHHHHHHHHHcCChHhHhhCHHHHHH--------HHHHHHHHHHHHHhhCchhH
Confidence 9999999999999999999888888887764 36889999999999999984
No 171
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=1.9e-08 Score=90.09 Aligned_cols=204 Identities=13% Similarity=0.028 Sum_probs=145.5
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
..+..++..|..|-..|-+.-|...|.+++.+.|+-+.+++.+|.-+...|+|+.|.+.|...++++|.+.-++.+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH-HHHHHcCCCChHHHHHHHHHHHHH
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKET-QNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
++.-|++.-|.+.+.+-.+ .||+++.....+.. -...-+..+|...+ +++...+.+. .-|+ +...|
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ-~D~~DPfR~LWLYl-------~E~k~dP~~A~tnL~qR~~~~d~e~--WG~~-iV~~y-- 209 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQ-DDPNDPFRSLWLYL-------NEQKLDPKQAKTNLKQRAEKSDKEQ--WGWN-IVEFY-- 209 (297)
T ss_pred eeecCchHhhHHHHHHHHh-cCCCChHHHHHHHH-------HHhhCCHHHHHHHHHHHHHhccHhh--hhHH-HHHHH--
Confidence 9999999999999999999 99999754332211 11223444444433 3333332221 1111 12222
Q ss_pred ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 416 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
+|+..+ ...++++.....+... +. ..-.+.++.+|..|...|+.++|...|+-++..+
T Consensus 210 LgkiS~-e~l~~~~~a~a~~n~~-~A--e~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 210 LGKISE-ETLMERLKADATDNTS-LA--EHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HhhccH-HHHHHHHHhhccchHH-HH--HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 232211 1122222222221110 00 0235688999999999999999999999988754
No 172
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=2.6e-08 Score=94.51 Aligned_cols=184 Identities=17% Similarity=0.143 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 368 (713)
.+..++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..|++.+. ..|++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~-~yP~~~------ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK-LYPNSP------ 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-H-TT-T------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCc------
Confidence 35678888888889999999999999988887765 67888889999999999999988888888 777763
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHH
Q 005125 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAY 448 (713)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (713)
..+.+++.+|.++.....- .+
T Consensus 77 --------------------------------~~~~A~Y~~g~~~~~~~~~--~~------------------------- 97 (203)
T PF13525_consen 77 --------------------------------KADYALYMLGLSYYKQIPG--IL------------------------- 97 (203)
T ss_dssp --------------------------------THHHHHHHHHHHHHHHHHH--HH-------------------------
T ss_pred --------------------------------chhhHHHHHHHHHHHhCcc--ch-------------------------
Confidence 1235666666665554100 00
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG---VKMAKA--MASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
......+...+|+..|+..+...|+...+... +..++. ...-+.+|..|++.|.|..|+..|+.+++..
T Consensus 98 ------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 98 ------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp -------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS
T ss_pred ------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 11223445789999999999999998654432 222222 3334568999999999999999999999999
Q ss_pred CCC---HHHHHHHHHHHHHcCCHHHHH
Q 005125 524 AYN---SVLLCNRAACRSKLGQYEKAV 547 (713)
Q Consensus 524 p~~---~~~~~~la~~~~~~g~~~~A~ 547 (713)
|+. .+++..++.+|.++|..+.|.
T Consensus 172 p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 172 PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 987 467889999999999988554
No 173
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.08 E-value=3.3e-09 Score=91.65 Aligned_cols=105 Identities=20% Similarity=0.212 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK---EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
+..++.+|..+...|++++|+..|++++..+|++. .++. .+|.+++..|++++|+..|++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~ 69 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHY------------WLGEAYYAQGKYADAAKAFLAVVKKY 69 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH------------HHHHHHHhhccHHHHHHHHHHHHHHC
Confidence 34788899999999999999999999999998863 3443 69999999999999999999999998
Q ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 005125 524 AYN---SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 524 p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
|++ +.++..+|.++..+|++++|+..++++++..|++..+
T Consensus 70 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 70 PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 875 6789999999999999999999999999999987653
No 174
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=1.4e-08 Score=95.28 Aligned_cols=275 Identities=12% Similarity=0.061 Sum_probs=192.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|.+-..+..+|.+|+...+|..|..+|++.-...|.........+..++..+.+.+|+.........+.-...+...-
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLq 118 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQ 118 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44555567899999999999999999999999999999999999999999999999999998877654422234555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
+.+.+..+++..+....++.-. .+. .....+.+....+.|+++.|++.|+.+++...-.+ .+-++++.++
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~----en~-----Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH 188 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPS----ENE-----ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH 188 (459)
T ss_pred HHHhcccccCcchHHHHHhccC----CCc-----cchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH
Confidence 6777778888887777665432 111 23456677788889999999999999999876664 5666779999
Q ss_pred HHccCHHHHHHHhhccccC----ChhhHHhh---------hc------ccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKF----CLEYYTKL---------FG------LAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~----~~~~~~~~---------~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 474 (713)
++.++++.|+++..+.+.. .|+..-.. .+ ...-..++...+-++++.++++.|.+.+..
T Consensus 189 y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD-- 266 (459)
T KOG4340|consen 189 YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD-- 266 (459)
T ss_pred HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc--
Confidence 9999999999988776543 22211000 00 001245677788899999999999876643
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 475 QIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED 549 (713)
Q Consensus 475 ~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 549 (713)
+-|....-.. ...+.+++.. -..+++.+...-+.-.+.++|--.+.+-|+-.+|.+..-|+-|...
T Consensus 267 -mPPRaE~elD-------PvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 267 -MPPRAEEELD-------PVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred -CCCcccccCC-------chhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHH
Confidence 3333211100 0011134322 2345666777777777778886677777887777777666666544
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.07 E-value=6.8e-09 Score=95.66 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
+..++.+|..+...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.+|++++.++|.+...+..+|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4578999999999999999999999999987763 4589999999999999999999999999999999999999999
Q ss_pred HHH-------HcCCHHHHHHHHHH
Q 005125 336 LYF-------RLGEAEKAVSHYKK 352 (713)
Q Consensus 336 ~~~-------~~g~~~~A~~~~~~ 352 (713)
++. .+|++++|+..+.+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 999 55555544444433
No 176
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.07 E-value=1.6e-09 Score=90.46 Aligned_cols=92 Identities=26% Similarity=0.464 Sum_probs=80.9
Q ss_pred hHHHHHhhcC-CceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeee
Q 005125 620 ERFRHFVTSP-GMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKE 695 (713)
Q Consensus 620 ~~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 695 (713)
+.|...+... +..++.|++ |+.|+.+.+.++++.+.++ .+.|+.+|.+..+.+...++|.++|++++|.+|+.+..
T Consensus 4 ~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 83 (101)
T TIGR01068 4 ANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDR 83 (101)
T ss_pred HHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeee
Confidence 4566655553 477777888 9999999999999998885 59999999999999999999999999999999999999
Q ss_pred ecCC-CHHHHHHHHHhh
Q 005125 696 IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~ 711 (713)
+.|. +.+.|.++|++.
T Consensus 84 ~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 84 SVGALPKAALKQLINKN 100 (101)
T ss_pred ecCCCCHHHHHHHHHhh
Confidence 9999 889999999864
No 177
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.06 E-value=9.4e-10 Score=92.06 Aligned_cols=89 Identities=25% Similarity=0.424 Sum_probs=78.0
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
.++|...+... ..++.|++ |++|+.+.|.+++++..+. .+.++.+|++..+.++..++|.++||+.+|.+|..
T Consensus 7 ~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 85 (102)
T cd03005 7 EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEK 85 (102)
T ss_pred HHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCe
Confidence 45677777554 57788888 9999999999999988763 58999999999999999999999999999999999
Q ss_pred eeeecCC-CHHHHHHHH
Q 005125 693 VKEIPGH-QCELLEKSV 708 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~ 708 (713)
+.++.|. +.+.|.+||
T Consensus 86 ~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 86 VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eeEeeCCCCHHHHHhhC
Confidence 9999999 888888775
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.06 E-value=3.1e-09 Score=106.61 Aligned_cols=212 Identities=16% Similarity=0.133 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----H
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINS--S----KATYRSNKSAALIGLGRQIEALVECKEAIRIDP--CY----H 327 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~ 327 (713)
+.|...|..|...++|++|..+|.++.+..- + -+..+...+.+|... ++++|+.+|++++.+.- +. +
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4577889999999999999999999987632 1 144667777777666 99999999999998732 11 6
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-----
Q 005125 328 RAHHRLAMLYFRL-GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS----- 401 (713)
Q Consensus 328 ~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----- 401 (713)
.++..+|.+|... |++++|+++|++|+. +.................+..+..+++|++|+..|++.....-+.
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~-~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAE-LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 6899999999999 999999999999999 544444555666778889999999999999999999998754321
Q ss_pred -hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q 005125 402 -APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA--AGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 402 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p 478 (713)
....+...+.+++..||+..|...+++....+|..... ....+...+-.++.. ...+++|+..|....++++
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s-----~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS-----REYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS-----HHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 22456677889999999999999999998888764331 234445555555543 4568888888876555543
No 179
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.05 E-value=1.7e-09 Score=92.52 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=73.9
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH-----------hhHHHcC----CCc
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP-----------YIAKSEG----VSS 680 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~-----------~~~~~~~----v~~ 680 (713)
+..++...+......++.|++ |++|+.+.|.|+++.++ ..+.++.||+|..+ .+...++ |.+
T Consensus 12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 345778888777777888888 99999999999999988 45778889888432 4445554 556
Q ss_pred ccEEEEEECCeEeeeecCC--CHHHHHHHHH
Q 005125 681 IPAFKIYKNGSRVKEIPGH--QCELLEKSVK 709 (713)
Q Consensus 681 ~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~~ 709 (713)
+|||++|++|+.++++.|. +.++|.+++.
T Consensus 91 ~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 91 TPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 9999999999999999995 7999998874
No 180
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.05 E-value=8.3e-10 Score=84.68 Aligned_cols=63 Identities=30% Similarity=0.429 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 005125 496 ARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLG-QYEKAVEDCTAALIVMP 558 (713)
Q Consensus 496 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 558 (713)
+..+|.+++..|+|++|+.+|+++++++|+++.+|+++|.++..+| ++++|+.+++++++++|
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4479999999999999999999999999999999999999999999 79999999999999998
No 181
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.04 E-value=1.2e-10 Score=110.82 Aligned_cols=211 Identities=13% Similarity=0.080 Sum_probs=147.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQ 409 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 409 (713)
+-..|+-|+++|.|++|+.||.+++. ++|.++ ..+.+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia-~~P~Np-----------------------------------------V~~~NR 137 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIA-VYPHNP-----------------------------------------VYHINR 137 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhc-cCCCCc-----------------------------------------cchhhH
Confidence 44567788888888888888888888 777663 455556
Q ss_pred HHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 410 AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKM 489 (713)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 489 (713)
+.+|+++..|..|...+..|+.++..+.. +|..+|.+-..+|...+|.+.++.+|++.|++.+....+..
T Consensus 138 A~AYlk~K~FA~AE~DC~~AiaLd~~Y~K----------AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 138 ALAYLKQKSFAQAEEDCEAAIALDKLYVK----------AYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHH----------HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 66666666666666666666665553322 45555666666666666666666666666665554443322
Q ss_pred HHH-----------------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 005125 490 AKA-----------------------MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKA 546 (713)
Q Consensus 490 ~~~-----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 546 (713)
+.. .......|..++..|.++.++.+|..-+..+.++..+..+ +..|.+.-++++|
T Consensus 208 i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~ 286 (536)
T KOG4648|consen 208 INSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCG 286 (536)
T ss_pred hcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchh
Confidence 210 1123346788888899999999998888777666666666 8889999999999
Q ss_pred HHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 547 VEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 547 ~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
+..+.+++..+|....+.. .++...++.++.+.|.+......+-+..
T Consensus 287 ~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~ 345 (536)
T KOG4648|consen 287 IIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKD 345 (536)
T ss_pred HHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhc
Confidence 9999999999887654332 8889999999999999987766655543
No 182
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.04 E-value=1.7e-09 Score=95.62 Aligned_cols=92 Identities=14% Similarity=0.197 Sum_probs=78.3
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCc--HhhHHHcCCCcccEEEEEE-CCeEee
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDH--PYIAKSEGVSSIPAFKIYK-NGSRVK 694 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~--~~~~~~~~v~~~Pt~~~~~-~g~~~~ 694 (713)
.|...+.....+++.|++ |++|+.+.|.|+++.+.+. .+.|+.|++|.. +.++..++|.++||++||. +|+.+.
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~ 91 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEG 91 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEE
Confidence 456666667788888999 9999999999999998884 467888887754 5788999999999999994 899999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.++|.++|+++.
T Consensus 92 ~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 92 QSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 99999 7899999998763
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6e-09 Score=99.75 Aligned_cols=109 Identities=22% Similarity=0.223 Sum_probs=101.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG---RQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
.+|+|++-|..+|.+|+.+|++..|...|.+|+++.|++++.+..+|.++.... ...++...+++++.++|.+..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 789999999999999999999999999999999999999999999999988764 46789999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
+.||..++..|+|.+|+..++..+. ..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~-~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD-LLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh-cCCCCCc
Confidence 9999999999999999999999999 6666543
No 184
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.03 E-value=3.2e-09 Score=87.26 Aligned_cols=98 Identities=30% Similarity=0.504 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
+++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhcc
Q 005125 341 GEAEKAVSHYKKSSSLANQ 359 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p 359 (713)
|++++|..++.+++. ..|
T Consensus 82 ~~~~~a~~~~~~~~~-~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALE-LDP 99 (100)
T ss_pred HhHHHHHHHHHHHHc-cCC
Confidence 999999999999988 665
No 185
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.3e-07 Score=85.34 Aligned_cols=272 Identities=15% Similarity=0.156 Sum_probs=181.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005125 267 NEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKA 346 (713)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 346 (713)
+-++-.|+|..++..-.+.-... ........+.+.|..+|++..-+......- .....+...++.....-++.++-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence 44556788888877766654333 667777888888888888776655444332 11234555556555555555554
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHh
Q 005125 347 VSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSY 426 (713)
Q Consensus 347 ~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 426 (713)
+.-..+.+. ++... .........+.++..-+++++|+........+ ++...--.++.++.+++-|...+
T Consensus 92 ~~~l~E~~a--~~~~~---sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------E~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 92 LASLYELVA--DSTDG---SNLIDLLLAAIIYMHDGDFDEALKALHLGENL------EAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred HHHHHHHHH--hhccc---hhHHHHHHhhHHhhcCCChHHHHHHHhccchH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433332 11110 11234455566777778888887777663322 45555567888888899999999
Q ss_pred hccccCChhhHHhhhcccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005125 427 NKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA----AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL 502 (713)
Q Consensus 427 ~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~ 502 (713)
+++.+++.+. .+..+|..+.+ .+++.+|.-+|++.-+..|..+.... .++.+
T Consensus 161 k~mq~ided~------------tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~lln------------G~Av~ 216 (299)
T KOG3081|consen 161 KKMQQIDEDA------------TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLN------------GQAVC 216 (299)
T ss_pred HHHHccchHH------------HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHc------------cHHHH
Confidence 8888877653 44445555544 34688888888888876666666665 48888
Q ss_pred HHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHH-HHHHHHHHHHHH
Q 005125 503 LFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE-DCTAALIVMPSYSKARL-EAAIQDYEMLIR 577 (713)
Q Consensus 503 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~-~~A~~~~~~al~ 577 (713)
...+|+|++|...++.++..++++++++.|+-.+-...|.-.++.+ .+.+....+|+++..-. .+....|+++..
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ekeaeFDrl~~ 293 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKEAEFDRLVL 293 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999888888777664 44555666777765433 556666666543
No 186
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.02 E-value=2e-09 Score=90.10 Aligned_cols=93 Identities=22% Similarity=0.299 Sum_probs=82.3
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
...|...+......++.|++ |+.|+.+.+.++.++..+. .+.++.+|.+..+.++..++|..+|++.+|..|+.+
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcc
Confidence 34677777766777888988 9999999999999998874 499999999999999999999999999999998878
Q ss_pred eeecCC-CHHHHHHHHHhh
Q 005125 694 KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~ 711 (713)
..+.|. +.+.|..||+++
T Consensus 83 ~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 83 VDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred eeecCCCCHHHHHHHHHhc
Confidence 889999 999999999875
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.02 E-value=1.2e-08 Score=94.00 Aligned_cols=116 Identities=17% Similarity=0.127 Sum_probs=95.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..++.+|.++...|++++|+..|++++.+.|+.... ..++.++|.++...|++++|+.+|++++.++|.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~---------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR---------SYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 46788999999999999999999999999987764321 012338999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCCCHHH
Q 005125 526 NSVLLCNRAACRS-------KLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNEEV 585 (713)
Q Consensus 526 ~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~~~~~ 585 (713)
....+.++|.++. .+|++++|+..++ +|+..|++++..+|.+...
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~---------------~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD---------------QAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH---------------HHHHHHHHHHHhCcccHHH
Confidence 9999999999998 6666666665554 4566789999999877643
No 188
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.02 E-value=1.3e-09 Score=91.32 Aligned_cols=90 Identities=14% Similarity=0.204 Sum_probs=77.1
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHH---HHHHHhCC-CcEEEEEeCCC----cHhhHHHcCCCcccEEEEEE-
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLM---EQVCKRFP-SVNFLKVEVED----HPYIAKSEGVSSIPAFKIYK- 688 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~p-~~~~~~v~~d~----~~~~~~~~~v~~~Pt~~~~~- 688 (713)
+.|...+.....+++.|++ |++|+.+.+.+ +++.+.+. .+.++.+|+++ .+.++..++|.++||+++|.
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 3566677777788888998 99999999887 56776664 78999999987 67899999999999999999
Q ss_pred -CCeEeeeecCC-CHHHHHHHHH
Q 005125 689 -NGSRVKEIPGH-QCELLEKSVK 709 (713)
Q Consensus 689 -~g~~~~~~~g~-~~~~~~~~~~ 709 (713)
+|+.+.+++|. +.+.|.++|+
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCcccccccCHHHHHHHhC
Confidence 79999999999 9999998874
No 189
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.2e-09 Score=102.18 Aligned_cols=113 Identities=24% Similarity=0.314 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSS---------------KATYRSNKSAALIGLGRQIEALVECKEAIRID 323 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (713)
+......|+.|++.|+|..|...|++|+..-.. ...++.+++.||..+++|.+|+..+.++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 345778899999999999999999999876321 13478999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Q 005125 324 PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372 (713)
Q Consensus 324 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 372 (713)
|+|..++++.|.++..+|+|+.|+..|+++++ ++|.+......+....
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k-~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALK-LEPSNKAARAELIKLK 335 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-hCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999975544444333
No 190
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.01 E-value=5.1e-09 Score=86.00 Aligned_cols=99 Identities=28% Similarity=0.435 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
+++.+|.++...|++++|+..++++++..|.+..++. .+|.++...+++++|+..|++++...|.+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYY------------NLAAAYYKLGKYEEALEDYEKALELDPDNAK 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 5778899999999999999999999999999886665 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
++..+|.++...|++++|...++++++..|.
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999998874
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=99.00 E-value=5.8e-09 Score=91.07 Aligned_cols=106 Identities=14% Similarity=0.047 Sum_probs=99.4
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
+.++.-+..+..|..++..|++++|...|+-..-.+|.+.+.|..||.|+..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 45566678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|.||..+|+.+.|..+|..++. .|.+
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~--~~~~ 137 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE--RTED 137 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh--Ccch
Confidence 9999999999999999999987 3544
No 192
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.98 E-value=1.5e-09 Score=86.89 Aligned_cols=81 Identities=22% Similarity=0.449 Sum_probs=73.5
Q ss_pred hcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 272 KARFEDALALYDRAIAINSS--KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSH 349 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 349 (713)
+|+|++|+.+|+++++.+|. +..+++.+|.+|+..|++++|+..+++ +..++.+...++.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 888998899999999999999999999999
Q ss_pred HHHH
Q 005125 350 YKKS 353 (713)
Q Consensus 350 ~~~a 353 (713)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 193
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.98 E-value=3.7e-09 Score=88.81 Aligned_cols=90 Identities=20% Similarity=0.361 Sum_probs=79.4
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCC--cHhhHHHcCCCcccEEEEEECCe
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVED--HPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~--~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
...|...+......++.|++ |++|+.+.|.+..+.+.++ .+.++.+|++. .+.++..++|.++||+++|++|+
T Consensus 7 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 7 DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC
Confidence 44777777777788888999 9999999999999987763 47889999998 99999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHH
Q 005125 692 RVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~ 708 (713)
.+.++.|. +.+.|.+||
T Consensus 87 ~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 87 FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred eeEEeCCCCCHHHHHhhC
Confidence 99999998 999988875
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.97 E-value=2.8e-09 Score=80.54 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=60.3
Q ss_pred HHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 498 LRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 498 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999875
No 195
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.96 E-value=6.7e-09 Score=85.02 Aligned_cols=89 Identities=33% Similarity=0.593 Sum_probs=79.4
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecC
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g 698 (713)
+|...+......++.|++ |+.|..+.+.++++....+++.++.+|.+..+.+...++|.++|++++|.+|+.+..+.|
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g 81 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVG 81 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEec
Confidence 455566666777888888 999999999999999888889999999999999999999999999999999999999999
Q ss_pred C-CHHHHHHHHH
Q 005125 699 H-QCELLEKSVK 709 (713)
Q Consensus 699 ~-~~~~~~~~~~ 709 (713)
. +.+.|.++|+
T Consensus 82 ~~~~~~l~~~i~ 93 (93)
T cd02947 82 ADPKEELEEFLE 93 (93)
T ss_pred CCCHHHHHHHhC
Confidence 9 7799988874
No 196
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.96 E-value=6.9e-09 Score=97.98 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=82.8
Q ss_pred chhHHHHHhhc-----CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEEC
Q 005125 618 SNERFRHFVTS-----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 618 ~~~~~~~~l~~-----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~ 689 (713)
+...|...+.. .+.+++.|++ |++|+.+.|.++++++.++ .+.+..+|++..+.++..++|.++||+.+|.+
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~ 115 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDK 115 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEEC
Confidence 45688887643 3678888999 9999999999999999885 47899999999999999999999999999999
Q ss_pred CeEeeeecCC-CHHHHHHHHHhh
Q 005125 690 GSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 690 g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|+.+....|. +.+.|.+|+.+.
T Consensus 116 G~~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 116 GKMYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred CEEEEeeCCCCCHHHHHHHHHHH
Confidence 9999888887 999999998754
No 197
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.94 E-value=5.9e-08 Score=86.79 Aligned_cols=126 Identities=19% Similarity=0.112 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHRLAM 335 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 335 (713)
.+.........++...+...+++.+..+|+. ..+.+.+|.++...|++++|+..|+.++...|+. ..+..+||.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 4445555556788888888888888888877 4567778888888888888888888888876554 457778888
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
++...|++++|+..++.... + ...+.++..+|.+|..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~---~----------------------------------------~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPD---E----------------------------------------AFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHcCCHHHHHHHHHhccC---c----------------------------------------chHHHHHHHHHHHHHH
Confidence 88888888888888755221 1 1124667778999999
Q ss_pred ccCHHHHHHHhhccc
Q 005125 416 LQRHQEAHDSYNKSP 430 (713)
Q Consensus 416 ~g~~~~A~~~~~~al 430 (713)
.|++++|+..|++|+
T Consensus 131 ~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 131 QGDYDEARAAYQKAL 145 (145)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999998875
No 198
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.94 E-value=7.5e-09 Score=86.73 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=76.9
Q ss_pred hhHHHHHhhcCCc-eEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC-eEe
Q 005125 619 NERFRHFVTSPGM-AVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG-SRV 693 (713)
Q Consensus 619 ~~~~~~~l~~~~~-~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g-~~~ 693 (713)
...|...+...+. .++.|++ |++|+.+.|.|.++++.+ +.+.++.+|++..+.+++.++|.++|++++|.+| ...
T Consensus 7 ~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~ 86 (103)
T cd03001 7 DSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSP 86 (103)
T ss_pred HHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcce
Confidence 4567776655444 7778888 999999999999999887 4689999999999999999999999999999988 555
Q ss_pred eeecCC-CHHHHHHHH
Q 005125 694 KEIPGH-QCELLEKSV 708 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~ 708 (713)
..+.|. +.+.|.+|+
T Consensus 87 ~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 87 QDYQGGRTAKAIVSAA 102 (103)
T ss_pred eecCCCCCHHHHHHHh
Confidence 678888 889998886
No 199
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.6e-08 Score=97.71 Aligned_cols=116 Identities=27% Similarity=0.247 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDP----NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 524 (713)
.....|..|++.|+|..|...|++|+..-. .+.+ .........+.++.|++.++.++++|.+|+..+.++|+++|
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~e-e~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEE-EQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHH-HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 445569999999999999999999987532 1111 11122233466778999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 525 YNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 525 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
++..+++..|.++..+|+++.|+..|++|++++|++..+..
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999999966554
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.94 E-value=3.4e-09 Score=80.09 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 264 FMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH 327 (713)
Q Consensus 264 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 327 (713)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667777777777777777777777777777777777777777777777777777777777653
No 201
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.94 E-value=2e-07 Score=104.30 Aligned_cols=242 Identities=15% Similarity=0.060 Sum_probs=193.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHH
Q 005125 307 GRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWND 386 (713)
Q Consensus 307 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (713)
++-.+..+.|++.+.-+|+..-.|..+-..+...++.++|.+.+++|+..+++...+ ..+..|.........-|.-+.
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee--EKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE--EKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH--HHHHHHHHHHhHHHhhCcHHH
Confidence 344456778889999999999999999889999999999999999999866665432 223334444444444566677
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHH
Q 005125 387 LLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466 (713)
Q Consensus 387 A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 466 (713)
..+.|++|.+..... .+|..|..+|...+++++|.++|+..++...+ ...+|..+|..++.+.+-+.|
T Consensus 1516 l~kVFeRAcqycd~~--~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q----------~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAY--TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ----------TRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred HHHHHHHHHHhcchH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc----------hhhHHHHHHHHHhcccHHHHH
Confidence 778888888876543 67888999999999999999999999875542 455899999999999999999
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005125 467 VKTAQDAAQIDPN--NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYE 544 (713)
Q Consensus 467 ~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 544 (713)
...+.+||..-|. +.+... ..|.+-++.|+-+.+...|+-.+.-+|...++|.-+...-.+.|+.+
T Consensus 1584 ~~lL~rAL~~lPk~eHv~~Is------------kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1584 RELLKRALKSLPKQEHVEFIS------------KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred HHHHHHHHhhcchhhhHHHHH------------HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH
Confidence 9999999999998 444443 57889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhC
Q 005125 545 KAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREI 579 (713)
Q Consensus 545 ~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~ 579 (713)
.+...|++++.+.=.- .++.-.|.+-|+..
T Consensus 1652 ~vR~lfeRvi~l~l~~-----kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1652 YVRDLFERVIELKLSI-----KKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHHHhcCCCh-----hHhHHHHHHHHHHH
Confidence 9999999999875332 33444555555543
No 202
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.93 E-value=5.7e-09 Score=88.44 Aligned_cols=91 Identities=16% Similarity=0.303 Sum_probs=76.7
Q ss_pred hhHHHHHhhcCCc-eEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCC--cHhhHHHcCCCcccEEEEEECCe-
Q 005125 619 NERFRHFVTSPGM-AVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVED--HPYIAKSEGVSSIPAFKIYKNGS- 691 (713)
Q Consensus 619 ~~~~~~~l~~~~~-~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~--~~~~~~~~~v~~~Pt~~~~~~g~- 691 (713)
...|...+...+. .++.|++ |++|+.+.|.++++++.++ .+.++.+|++. .+.++..++|.++||+.+|..|.
T Consensus 7 ~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 7 PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCc
Confidence 4567777765554 7778888 9999999999999998874 57889999998 88999999999999999999886
Q ss_pred ----EeeeecCC-CHHHHHHHHH
Q 005125 692 ----RVKEIPGH-QCELLEKSVK 709 (713)
Q Consensus 692 ----~~~~~~g~-~~~~~~~~~~ 709 (713)
....+.|. +.+.|.+||.
T Consensus 87 ~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 87 ASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred ccccccccccCccCHHHHHHHhC
Confidence 45667788 8999998874
No 203
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=2.1e-08 Score=88.68 Aligned_cols=103 Identities=31% Similarity=0.480 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK-----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
++.+..-|+.++..|+|++|..-|..||++.|.. ..+|.+.|.+++.++.++.|+..+.++|+++|.+..++.+.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 3457888999999999999999999999999865 45788999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+..|++|++.|.++++ .+|...
T Consensus 175 Aeayek~ek~eealeDyKki~E-~dPs~~ 202 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILE-SDPSRR 202 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH-hCcchH
Confidence 9999999999999999999999 999874
No 204
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.91 E-value=1.7e-06 Score=84.56 Aligned_cols=227 Identities=30% Similarity=0.334 Sum_probs=172.3
Q ss_pred hcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 272 KARFEDALALYDRAIAINSS--KATYRSNKSAALIGLGRQIEALVECKEAIR--IDPCYHRAHHRLAMLYFRLGEAEKAV 347 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 347 (713)
.+.+..+...+..++...+. ........+..+...+++..++..+...+. ..+.....+..++..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 57788888888888888776 377888888999999999999999999887 67788888889999999999999999
Q ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH-HHHHccCHHHHHHHh
Q 005125 348 SHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE-ALLRLQRHQEAHDSY 426 (713)
Q Consensus 348 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~-~~~~~g~~~~A~~~~ 426 (713)
..+..++. ..+... ......+. ++...|++++|...|
T Consensus 116 ~~~~~~~~-~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~a~~~~ 153 (291)
T COG0457 116 ELLEKALA-LDPDPD-----------------------------------------LAEALLALGALYELGDYEEALELY 153 (291)
T ss_pred HHHHHHHc-CCCCcc-----------------------------------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99988887 665541 11222233 677777777777777
Q ss_pred hccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 427 NKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN-NKEVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 427 ~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
.+++...+.. ......+...+..+...+++++|+..+.+++...+. ....+. .++..+..
T Consensus 154 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 214 (291)
T COG0457 154 EKALELDPEL-------NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL------------NLGLLYLK 214 (291)
T ss_pred HHHHhcCCCc-------cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH------------HhhHHHHH
Confidence 7776544410 012334455555677788888888888888888887 455554 57888888
Q ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.+++++|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888888888888876777777777777777788888888888888876
No 205
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.91 E-value=8.4e-09 Score=86.36 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=76.1
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+.|... ...+..++.|++ |++|+.+.|.+++++..+ ..+.+..+|++..+.++..++|.++||+++|.+| .+
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~~ 84 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-LA 84 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-Cc
Confidence 455553 445678888888 999999999999999876 2488999999999999999999999999999876 45
Q ss_pred eeecCC-CHHHHHHHHHhh
Q 005125 694 KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~ 711 (713)
..+.|. +.+.|.+++++.
T Consensus 85 ~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 678888 999999999875
No 206
>PRK11906 transcriptional regulator; Provisional
Probab=98.90 E-value=6.8e-08 Score=98.29 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhc---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Q 005125 261 ELKFMGNEAYNKA---RFEDALALYDRAI---AINSSKATYRSNKSAALIGL---------GRQIEALVECKEAIRIDPC 325 (713)
Q Consensus 261 ~~~~lg~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 325 (713)
.++..|...+..+ ..+.|+.+|.+++ +++|+.+.+|..+|.|++.. ....+|....++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4577777776554 4577999999999 99999999999999999865 3456889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQV 405 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 405 (713)
++.++..+|.++...++++.|+..|++|+. ++|+.. .+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~-L~Pn~A-----------------------------------------~~ 374 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKI-HSTDIA-----------------------------------------SL 374 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhh-cCCccH-----------------------------------------HH
Confidence 999999999999999999999999999999 998873 77
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 474 (713)
|+..|.++...|+.++|++.++++++++|-.... ....+-.-.+-....++|+..|-+-.
T Consensus 375 ~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 375 YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA---------VVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH---------HHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 8888999999999999999999999998853221 12222221334556788888876543
No 207
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.90 E-value=9.2e-09 Score=85.79 Aligned_cols=90 Identities=21% Similarity=0.322 Sum_probs=79.8
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC-eE
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG-SR 692 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g-~~ 692 (713)
...|...+......++.|++ |+.|+.+.+.+.++++.+ +.+.|+.+|.+..+.+...++|..+|++++|..| ..
T Consensus 5 ~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 84 (101)
T cd02961 5 DDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKE 84 (101)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcc
Confidence 34777777777788888888 999999999999999877 6799999999999999999999999999999987 78
Q ss_pred eeeecCC-CHHHHHHHH
Q 005125 693 VKEIPGH-QCELLEKSV 708 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~ 708 (713)
+.++.|. +.+.|.+||
T Consensus 85 ~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 85 PVKYEGPRTLESLVEFI 101 (101)
T ss_pred cccCCCCcCHHHHHhhC
Confidence 8888888 888888774
No 208
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.89 E-value=6.5e-09 Score=83.15 Aligned_cols=81 Identities=28% Similarity=0.434 Sum_probs=71.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005125 460 AGRFEDAVKTAQDAAQIDPNN--KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACR 537 (713)
Q Consensus 460 ~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 537 (713)
.|++++|+.+|+++++.+|.+ ...+. .+|.+++..|+|++|+..+++ +..++.+...++.+|.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~------------~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLY------------NLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCL 68 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHH------------HHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHH------------HHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Confidence 689999999999999999964 23333 689999999999999999999 888998889999999999
Q ss_pred HHcCCHHHHHHHHHHH
Q 005125 538 SKLGQYEKAVEDCTAA 553 (713)
Q Consensus 538 ~~~g~~~~A~~~~~~a 553 (713)
.++|++++|+..++++
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999999875
No 209
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=1.6e-07 Score=84.32 Aligned_cols=222 Identities=12% Similarity=0.072 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 371 (713)
.+..++.+|..|-.+|-+.-|.-.|.+++.+.|+.+.++..||..+...|+++.|.+.|...++ +||.+. .++
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E-LDp~y~------Ya~ 136 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-LDPTYN------YAH 136 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc-cCCcch------HHH
Confidence 3567888899999999999999999999999999999999999999999999999999999999 999985 678
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhh-ccccCChhhHHhhhcccCcHHHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYN-KSPKFCLEYYTKLFGLAGGAYLL 450 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~~~ 450 (713)
++++..+.--|++.-|.+.+.+-.+.+|.++-..+.. .+-...-+..+|...+. ++...+.+. .-|
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL--Yl~E~k~dP~~A~tnL~qR~~~~d~e~-----------WG~ 203 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL--YLNEQKLDPKQAKTNLKQRAEKSDKEQ-----------WGW 203 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH--HHHHhhCCHHHHHHHHHHHHHhccHhh-----------hhH
Confidence 8888888889999999999999999999886332221 22233445666665543 344333221 111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC----
Q 005125 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN---- 526 (713)
Q Consensus 451 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 526 (713)
+. +-+.+|+..+ ...++++.+-..++...-.. -.++++.+|..+...|+.++|...|+-++..+--+
T Consensus 204 ~i---V~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~-----LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~ 274 (297)
T COG4785 204 NI---VEFYLGKISE-ETLMERLKADATDNTSLAEH-----LTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEH 274 (297)
T ss_pred HH---HHHHHhhccH-HHHHHHHHhhccchHHHHHH-----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHH
Confidence 11 1122333322 22344444333333221111 13456679999999999999999999988754322
Q ss_pred HHHHHHHHHHHHHcCC
Q 005125 527 SVLLCNRAACRSKLGQ 542 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~ 542 (713)
--+.+.|+.++....+
T Consensus 275 RyA~~EL~~l~q~~~~ 290 (297)
T COG4785 275 RYALLELSLLGQDQDD 290 (297)
T ss_pred HHHHHHHHHhccccch
Confidence 2234444444444433
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.86 E-value=7.5e-06 Score=80.27 Aligned_cols=269 Identities=14% Similarity=0.054 Sum_probs=195.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK-ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
...+-++..-+......|+++.|..-|+..+. +|.. .--+..|-.--.++|..+.|+.+.+++....|..+.++...-
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 34455677778888999999999999998765 4432 222333333445789999999999999999999999998888
Q ss_pred HHHHHcCCHHHHHHHHHHHhh--hhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 005125 335 MLYFRLGEAEKAVSHYKKSSS--LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA 412 (713)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~al~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 412 (713)
...+..|+++.|++..+.... .+.++....... ..+..++... -..+...|......++++.|+..|.+... +..
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rA-vLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~A-Ara 272 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRA-VLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVA-ARA 272 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHH-HHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHH-HHH
Confidence 888999999999999887655 133332221111 1111122221 23457788888999999999998765554 889
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCCCCHHHHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDA---AQIDPNNKEVIKGVKM 489 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~~~~ 489 (713)
+++.|+..++-.+++.+.+..|.. . ++..|....--+.++.-++++ ..+.|++.+...
T Consensus 273 lf~d~~~rKg~~ilE~aWK~ePHP-----------~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~---- 333 (531)
T COG3898 273 LFRDGNLRKGSKILETAWKAEPHP-----------D----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSL---- 333 (531)
T ss_pred HHhccchhhhhhHHHHHHhcCCCh-----------H----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHH----
Confidence 999999999999999998887732 1 344444443334444444443 456888888776
Q ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 005125 490 AKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL-GQYEKAVEDCTAALIV 556 (713)
Q Consensus 490 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 556 (713)
..+...+..|+|..|...-+.+....| ...++..++.+-... ||-.++...+-++++-
T Consensus 334 --------~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 334 --------AVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred --------HHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 588888999999999999999999998 455667778777655 9999999999999874
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.85 E-value=1.1e-07 Score=93.04 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005125 258 DPEELKFMGNEA-YNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAH 330 (713)
Q Consensus 258 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 330 (713)
+...++..|..+ +..|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|++++...|++ ++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 446678888876 56799999999999999999988 5799999999999999999999999999998875 8899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+.+|.++..+|++++|+..|+++++ ..|+..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~-~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK-KYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-HCcCCH
Confidence 9999999999999999999999999 888875
No 212
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.84 E-value=1e-07 Score=102.60 Aligned_cols=141 Identities=10% Similarity=-0.017 Sum_probs=102.6
Q ss_pred cCCCCHH--HHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 005125 254 LNKLDPE--ELKFMGNEAYNKAR---FEDALALYDRAIAINSSKATYRSNKSAALIGLG--------RQIEALVECKEAI 320 (713)
Q Consensus 254 ~~~~~~~--~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al 320 (713)
..|.+++ .++..|..++..++ +.+|+.+|++|++++|+++.++..++.+|.... +...+....++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4455554 45677777776544 889999999999999999999998888876542 2455666667766
Q ss_pred Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC
Q 005125 321 RI--DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG 398 (713)
Q Consensus 321 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 398 (713)
.+ +|..+.+|..+|..+...|++++|...+++|+. ++|.. ..+..++..+...|++++|++.|++++.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-L~ps~-------~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-LEMSW-------LNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 64 777788898899999999999999999999999 88742 345555555555666666666666666666
Q ss_pred CCCh
Q 005125 399 ADSA 402 (713)
Q Consensus 399 p~~~ 402 (713)
|...
T Consensus 484 P~~p 487 (517)
T PRK10153 484 PGEN 487 (517)
T ss_pred CCCc
Confidence 5553
No 213
>PRK15331 chaperone protein SicA; Provisional
Probab=98.84 E-value=1.3e-07 Score=82.77 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
.+..+..|.-++..|++++|...|+-....+|.++..|. .+|.++..+++|++|+..|..|..+++++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~------------GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTM------------GLAAVCQLKKQFQKACDLYAVAFTLLKND 104 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 446778899999999999999999999999999999886 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCC
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIP 580 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p 580 (713)
+...+..|.||+.+|+.+.|...|+.++. .|.+.. ..++|...++ ++...+
T Consensus 105 p~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~-l~~~A~~~L~-~l~~~~ 155 (165)
T PRK15331 105 YRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES-LRAKALVYLE-ALKTAE 155 (165)
T ss_pred CCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH-HHHHHHHHHH-HHHccc
Confidence 99999999999999999999999999998 455322 1244443333 444443
No 214
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.83 E-value=2e-08 Score=84.41 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=71.0
Q ss_pred cchhHHHHHhhc--CCceEEEeec---------CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCc-------HhhHHHcC
Q 005125 617 SSNERFRHFVTS--PGMAVVLFCS---------KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDH-------PYIAKSEG 677 (713)
Q Consensus 617 ~~~~~~~~~l~~--~~~~vv~f~~---------cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~-------~~~~~~~~ 677 (713)
.+.+.|...+.. .+.+++.|++ ||+|+.+.|.++++...++ ++.|++||+++. ..++..++
T Consensus 7 ~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 7 RGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred cCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC
Confidence 345677777765 4567777887 9999999999999999997 799999999874 58999999
Q ss_pred CC-cccEEEEEECCeEeeeecCCCHHHHHHHH
Q 005125 678 VS-SIPAFKIYKNGSRVKEIPGHQCELLEKSV 708 (713)
Q Consensus 678 v~-~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~ 708 (713)
|. ++|||++|+.|+.+.+-.-.+.+.+..++
T Consensus 87 I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 87 LTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred cccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 98 99999999887654332222566655543
No 215
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.83 E-value=7.4e-08 Score=103.65 Aligned_cols=137 Identities=12% Similarity=0.038 Sum_probs=108.4
Q ss_pred HHHHHHHHHHccC---HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Q 005125 406 YALQAEALLRLQR---HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA--------GRFEDAVKTAQDAA 474 (713)
Q Consensus 406 ~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al 474 (713)
++..|..|...++ +..|+.+|++|++++|++.. ++-.++.+|... .+...+....++++
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~----------a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY----------AQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH----------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3445666665544 78999999999999997543 455555555443 23456667777766
Q ss_pred Hh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 475 QI--DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 475 ~~--~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
.+ +|..+.++. .+|..+...|++++|...|++|++++| +..+|..+|.++...|++++|++.|++
T Consensus 412 al~~~~~~~~~~~------------ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 412 ALPELNVLPRIYE------------ILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred hcccCcCChHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 64 666776665 478888889999999999999999999 589999999999999999999999999
Q ss_pred HHHhCCCChHHHH
Q 005125 553 ALIVMPSYSKARL 565 (713)
Q Consensus 553 al~~~p~~~~a~~ 565 (713)
|+.++|.++..++
T Consensus 479 A~~L~P~~pt~~~ 491 (517)
T PRK10153 479 AFNLRPGENTLYW 491 (517)
T ss_pred HHhcCCCCchHHH
Confidence 9999999886544
No 216
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.2e-06 Score=79.92 Aligned_cols=246 Identities=18% Similarity=0.150 Sum_probs=168.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 005125 301 AALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARE 380 (713)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~ 380 (713)
+-++..|+|..++...++.-... ........++..|..+|++..-+......-. ..+.+....+.....
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~----------~~lqAvr~~a~~~~~ 84 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKA----------TPLQAVRLLAEYLEL 84 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccC----------ChHHHHHHHHHHhhC
Confidence 45667899999998888765443 6677888899999999987765543322110 112223333333333
Q ss_pred hhcHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH
Q 005125 381 LKRWNDLLKETQNVISF-GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA 459 (713)
Q Consensus 381 ~~~~~~A~~~~~~al~~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 459 (713)
-++-++-+......+.. .......+...-|.+|...|++++|+........ .++...--.++.+
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~---------------lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN---------------LEAAALNVQILLK 149 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch---------------HHHHHHHHHHHHH
Confidence 33334434333333322 2222224555568899999999999999987432 2344444678889
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005125 460 AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535 (713)
Q Consensus 460 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 535 (713)
+.+++-|...++++..++.+..-. .+|..|.. -+++.+|.-+|++.-+..|-.+..+...+.
T Consensus 150 ~~r~d~A~~~lk~mq~ided~tLt--------------QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av 215 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDATLT--------------QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAV 215 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHHHH--------------HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHH
Confidence 999999999999998887654322 34444443 357899999999999977779999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHH-------------HHHHHHHHHHHHhCCCCHHHH
Q 005125 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL-------------EAAIQDYEMLIREIPGNEEVG 586 (713)
Q Consensus 536 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-------------~~A~~~~~~al~~~p~~~~~~ 586 (713)
|++.+|+|++|...++.++..++++++.+. +--.+...+....+|+++-+.
T Consensus 216 ~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 216 CHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 999999999999999999999999998876 223345555556666665443
No 217
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.81 E-value=3.6e-07 Score=81.68 Aligned_cols=120 Identities=19% Similarity=0.187 Sum_probs=98.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh
Q 005125 305 GLGRQIEALVECKEAIRIDPCY---HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAREL 381 (713)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~ 381 (713)
..+++..+...+++.+.-+|+. ..+.+.+|.++...|++++|+..|+.++. ..|+...
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l------------------ 83 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPEL------------------ 83 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHH------------------
Confidence 5788888988999999999988 56788899999999999999999999988 5544310
Q ss_pred hcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcC
Q 005125 382 KRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG 461 (713)
Q Consensus 382 ~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 461 (713)
.+.+...++.++...|++++|+..++..... + ..+.++..+|.+|...|
T Consensus 84 --------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~-~----------~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 84 --------------------KPLARLRLARILLQQGQYDEALATLQQIPDE-A----------FKALAAELLGDIYLAQG 132 (145)
T ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccCc-c----------hHHHHHHHHHHHHHHCC
Confidence 1356777899999999999999999773221 1 24557888999999999
Q ss_pred CHHHHHHHHHHHH
Q 005125 462 RFEDAVKTAQDAA 474 (713)
Q Consensus 462 ~~~~A~~~~~~al 474 (713)
++++|+..|++||
T Consensus 133 ~~~~A~~~y~~Al 145 (145)
T PF09976_consen 133 DYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999999875
No 218
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.81 E-value=3.7e-06 Score=82.17 Aligned_cols=205 Identities=26% Similarity=0.342 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIA--INSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM- 335 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~- 335 (713)
.......+..+...+++..++..+..++. ..+.....+...+..+...+++..++..+.+++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 56788899999999999999999999997 788888999999999999999999999999999988887666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQK--DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
++...|+++.|...|.+++. ..|. .. ...+...+..+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~----------------------------------------~~~~~~~~~~~ 177 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNEL----------------------------------------AEALLALGALL 177 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccch----------------------------------------HHHHHHhhhHH
Confidence 89999999999999999987 7763 11 12333334445
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
...+++++|+..+.+++...+.. ....+..++..+...+++++|+..+..++...|.....+.
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------- 240 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPDD---------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALY-------- 240 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCccc---------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHh--------
Confidence 66666777777777766665531 2335666777777777888888888888877777433333
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.++..+...+.+++|...+.+++...|.
T Consensus 241 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 241 ----NLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ----hHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3566666666788888888888877775
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.8e-07 Score=88.47 Aligned_cols=123 Identities=17% Similarity=0.159 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 005125 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG---EAEKAVSHY 350 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 350 (713)
..++-+.-++.-+..+|++++-|..||.+|..+|++..|...|.+|+++.|++++.+..+|.++..+. ...++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35666777788889999999999999999999999999999999999999999999999999888764 356788999
Q ss_pred HHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChH
Q 005125 351 KKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP 403 (713)
Q Consensus 351 ~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 403 (713)
++++. +||.+. .....++..+++.|+|.+|+..++..++..|.+.+
T Consensus 217 ~~al~-~D~~~i------ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALA-LDPANI------RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHh-cCCccH------HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999 999984 56666677777777777777777777777766654
No 220
>PRK11906 transcriptional regulator; Provisional
Probab=98.81 E-value=2.8e-07 Score=93.89 Aligned_cols=148 Identities=14% Similarity=0.049 Sum_probs=118.4
Q ss_pred HHHHHHHHHcc---CHHHHHHHhhccc---cCChhhHHhhhcccCcHHHHHHHHHHHHHc---------CCHHHHHHHHH
Q 005125 407 ALQAEALLRLQ---RHQEAHDSYNKSP---KFCLEYYTKLFGLAGGAYLLIVRAQVYIAA---------GRFEDAVKTAQ 471 (713)
Q Consensus 407 ~~la~~~~~~g---~~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~ 471 (713)
+..|...+..+ ..+.|+.+|.+|+ .++|++ +.++..++.++... .+..+|.++.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~----------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~ 328 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK----------TECYCLLAECHMSLALHGKSELELAAQKALELLD 328 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 44455554433 3567888888888 777754 33555566665542 34578999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 472 DAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCT 551 (713)
Q Consensus 472 ~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 551 (713)
+|++++|.++.++. .+|.++...++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|++.++
T Consensus 329 rAveld~~Da~a~~------------~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 329 YVSDITTVDGKILA------------IMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHhcCCCCHHHHH------------HHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999988 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHH-------------HHHHHHHHHHH
Q 005125 552 AALIVMPSYSKARL-------------EAAIQDYEMLI 576 (713)
Q Consensus 552 ~al~~~p~~~~a~~-------------~~A~~~~~~al 576 (713)
++++++|.-..+-. +.|+..|-+-.
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 99999998665433 66666665543
No 221
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.80 E-value=2.1e-07 Score=78.58 Aligned_cols=96 Identities=26% Similarity=0.244 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPC---YHRAHHRL 333 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 333 (713)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999975443 568999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~ 355 (713)
+.++...|++++|+..+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988765
No 222
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=9.3e-08 Score=84.67 Aligned_cols=108 Identities=25% Similarity=0.253 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
-+-.-|.-++..|+|++|..-|..||.+.|....-.. ...+.+.|.++.+++.++.|+..+.++|+++|.+..
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~r-------sIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEER-------SILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHH-------HHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 4445588899999999999999999999988654221 233458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
++..+|.+|.++..+++|++.|++.++++|....+
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 99999999999999999999999999999987543
No 223
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.79 E-value=2e-07 Score=78.75 Aligned_cols=113 Identities=24% Similarity=0.140 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC--
Q 005125 448 YLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY-- 525 (713)
Q Consensus 448 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 525 (713)
.+++.+|.++...|+.++|+.+|++++........... ++..+|..+..+|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~---------a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRR---------ALIQLASTLRNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 37888999999999999999999999997666543221 2337999999999999999999999999888
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005125 526 -NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYE 573 (713)
Q Consensus 526 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~ 573 (713)
+..+...++.++...|++++|+..+-.++.-... .+.+|+..|-
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~----~y~ra~~~ya 117 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALAETLP----RYRRAIRFYA 117 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 7788889999999999999999999888763211 4455555443
No 224
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.79 E-value=1.3e-07 Score=92.31 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 446 GAYLLIVRAQVY-IAAGRFEDAVKTAQDAAQIDPNNK---EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 446 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
.....+..+..+ ...|+|++|+..|++.++..|++. .+++ .+|.+|+..|++++|+..|++++.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y------------~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANY------------WLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677777776 567999999999999999999984 4555 599999999999999999999999
Q ss_pred cCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 005125 522 HEAYN---SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 522 ~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
..|++ +++++.+|.++..+|++++|+..|+++++..|+...+
T Consensus 209 ~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 209 NYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 88874 7899999999999999999999999999999988654
No 225
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=2.1e-06 Score=96.56 Aligned_cols=237 Identities=11% Similarity=0.042 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 005125 275 FEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI-DPCY----HRAHHRLAMLYFRLGEAEKAVSH 349 (713)
Q Consensus 275 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~ 349 (713)
-.+..+-|++.+.-+|+....|...-.-+.++++.++|.+.+++||.. ++.. ...|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788899999999999999999999999999999999999974 4432 23444444444455677778889
Q ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhcc
Q 005125 350 YKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS 429 (713)
Q Consensus 350 ~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 429 (713)
|++|.+..+| +..+..++.+|...+.+++|.+.++..++...+ ...+|...|..+++..+-+.|...+.+|
T Consensus 1520 FeRAcqycd~--------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1520 FERACQYCDA--------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-TRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred HHHHHHhcch--------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-hhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999884444 466888899999999999999999999998774 4589999999999999999999999999
Q ss_pred ccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Q 005125 430 PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKY 509 (713)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 509 (713)
++.-|.. ....+....|.+.++.|+.+.+...|+..+..+|.-.+.|.. ....-.+.|+.
T Consensus 1591 L~~lPk~--------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~V------------Yid~eik~~~~ 1650 (1710)
T KOG1070|consen 1591 LKSLPKQ--------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSV------------YIDMEIKHGDI 1650 (1710)
T ss_pred Hhhcchh--------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHH------------HHHHHHccCCH
Confidence 9988862 245577778999999999999999999999999999999984 67778889999
Q ss_pred HHHHHHHHHHhccC--CCCHHHHHHHHHHHHHc
Q 005125 510 KEACYAYSEGLEHE--AYNSVLLCNRAACRSKL 540 (713)
Q Consensus 510 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 540 (713)
+.+...|++++.+. |.....++..-.-|.+.
T Consensus 1651 ~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 99999999999764 55555555555555443
No 226
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.79 E-value=2.8e-08 Score=83.57 Aligned_cols=89 Identities=26% Similarity=0.356 Sum_probs=75.9
Q ss_pred hHHHHHhhcCC-ceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCC-cHhhHHHcCCCcccEEEEEECC-e
Q 005125 620 ERFRHFVTSPG-MAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVED-HPYIAKSEGVSSIPAFKIYKNG-S 691 (713)
Q Consensus 620 ~~~~~~l~~~~-~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~-~~~~~~~~~v~~~Pt~~~~~~g-~ 691 (713)
+.|...+...+ ..++.|++ |++|+.+.|.+..+++.+. .+.++.+|.+. .+.++..++|.++|++++|..| .
T Consensus 8 ~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 8 SNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred hcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCC
Confidence 46666665555 67778888 9999999999999998863 58999999999 9999999999999999999987 5
Q ss_pred EeeeecCC-CHHHHHHHH
Q 005125 692 RVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~ 708 (713)
....+.|. +.+.|.+||
T Consensus 88 ~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 88 EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CccccCCccCHHHHHhhC
Confidence 66778887 889998875
No 227
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.78 E-value=4.2e-08 Score=82.14 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=74.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCC--cccEEEEEEC--CeEeeeecCC-C
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVS--SIPAFKIYKN--GSRVKEIPGH-Q 700 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~g~-~ 700 (713)
..+.+++|++ |++|..+.+.++++++++ +.+.|++||+++.+.++..+||. ++|++++|.+ |.......|. +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 4567777876 999999999999999998 56999999999999999999999 9999999998 7777766776 9
Q ss_pred HHHHHHHHHhh
Q 005125 701 CELLEKSVKLY 711 (713)
Q Consensus 701 ~~~~~~~~~~~ 711 (713)
.+.|.+||+++
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 228
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.75 E-value=7.5e-08 Score=76.69 Aligned_cols=75 Identities=28% Similarity=0.370 Sum_probs=65.6
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
+.+|++ |++|+.+.|.++++++.+ +.+.++.||.++.+.++..++|.++||+++ +|+ .++.|. +.++|.++|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~l 78 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEAI 78 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHHH
Confidence 556777 999999999999999887 458899999999999999999999999875 776 378888 899999999
Q ss_pred Hhh
Q 005125 709 KLY 711 (713)
Q Consensus 709 ~~~ 711 (713)
++.
T Consensus 79 ~~~ 81 (82)
T TIGR00411 79 KKR 81 (82)
T ss_pred Hhh
Confidence 864
No 229
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=3.9e-05 Score=81.96 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=49.0
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHhCCC-CHHHHHHH------------HHHHHHHHHHHHHHHHH
Q 005125 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQ------DAAQIDPN-NKEVIKGV------------KMAKAMASARLRGNLLF 504 (713)
Q Consensus 444 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~------~al~~~p~-~~~~~~~~------------~~~~~~~~~~~lg~~~~ 504 (713)
..++.++..-+..+....+|++|..++- .|+.+..+ +..+-.-+ ........+-.+|.++.
T Consensus 1077 ~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~ 1156 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL 1156 (1416)
T ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH
Confidence 3578888888999999999999987654 44443211 00000000 00112344557999999
Q ss_pred HcccHHHHHHHHHHH
Q 005125 505 KASKYKEACYAYSEG 519 (713)
Q Consensus 505 ~~g~~~~A~~~~~~a 519 (713)
++|.|..|-+-|.+|
T Consensus 1157 qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1157 QQGAYHAATKKFTQA 1171 (1416)
T ss_pred hccchHHHHHHHhhh
Confidence 999999999888765
No 230
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.74 E-value=5e-08 Score=81.85 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=73.9
Q ss_pred hhHHHHHhhcC-CceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe-
Q 005125 619 NERFRHFVTSP-GMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS- 691 (713)
Q Consensus 619 ~~~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~- 691 (713)
...|...+... ...++.|++ |++|+.+.|.++++++.+. .+.++.+|++.. .++..+++.++||+.+|.+|.
T Consensus 7 ~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~ 85 (104)
T cd02995 7 GKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDK 85 (104)
T ss_pred hhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCc
Confidence 45777766554 567777888 9999999999999998864 489999999887 577888999999999999987
Q ss_pred -EeeeecCC-CHHHHHHHH
Q 005125 692 -RVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 692 -~~~~~~g~-~~~~~~~~~ 708 (713)
...++.|. +.+.|.+||
T Consensus 86 ~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 86 SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCceEccCCcCHHHHHhhC
Confidence 56778888 888888875
No 231
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.71 E-value=7.9e-08 Score=92.02 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=70.3
Q ss_pred CCceEEEeec-----CchhHHHHHHHHHHHHhCCCcE--EEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee-eecCC-
Q 005125 629 PGMAVVLFCS-----KAEHKQVLQLMEQVCKRFPSVN--FLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK-EIPGH- 699 (713)
Q Consensus 629 ~~~~vv~f~~-----cg~c~~~~~~~~~l~~~~p~~~--~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~g~- 699 (713)
.+..+++|.+ |++|+.+.|+++++++.++.+. ++.+|.|+.+.++..++|.++|||++|++|+.+. ++.|.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 3445555644 9999999999999999997654 6666777999999999999999999999999984 89999
Q ss_pred CHHHHHHHHHhh
Q 005125 700 QCELLEKSVKLY 711 (713)
Q Consensus 700 ~~~~~~~~~~~~ 711 (713)
+.+++.++|+..
T Consensus 99 ~~~~l~~~i~~~ 110 (215)
T TIGR02187 99 AGYEFAALIEDI 110 (215)
T ss_pred CHHHHHHHHHHH
Confidence 888999998765
No 232
>PHA02125 thioredoxin-like protein
Probab=98.70 E-value=9.7e-08 Score=74.08 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=57.9
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC--CHHHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH--QCELLEKSV 708 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~ 708 (713)
+++|++ |++|+.+.|.++++. ..++.||.++.++++..++|.++|||+ +|+.++++.|. +..+|++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 566777 999999999998763 468899999999999999999999987 78999999998 446776655
No 233
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.70 E-value=5.3e-08 Score=74.34 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=56.5
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 269 AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
++..|+|++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35678888899999998888888888888889999989999999999988888888887777776653
No 234
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=4.8e-06 Score=77.31 Aligned_cols=233 Identities=18% Similarity=0.150 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------CC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDP-------------CY------HRAHHRLAMLYFRLGEAEKAVSHYKK 352 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 352 (713)
....|...-.++..+..+++|...+.-.-++|. +. .......|.+....|...+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 345666666777777777777766665544432 11 11233446666677777777665554
Q ss_pred HhhhhccccHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhcccc
Q 005125 353 SSSLANQKDIAKAEALHKHLTKCNEARELKRW-NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPK 431 (713)
Q Consensus 353 al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (713)
... . ......-.+.+.. +..+..+++-+ ..+.+.+..++..+|.|.-.+..+.+.++
T Consensus 148 L~~-~--------------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~ 205 (366)
T KOG2796|consen 148 LKT-V--------------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIK 205 (366)
T ss_pred HHH-H--------------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 433 1 1111111111211 33333333333 25666778899999999999999999998
Q ss_pred CChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Q 005125 432 FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKE 511 (713)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 511 (713)
.+|. .++.....+|.+-++.||.+.|..+|+..-+....-..... ......+.+.++.-.++|.+
T Consensus 206 ~~~e---------~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~------~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 206 YYPE---------QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG------KIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hCCc---------ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch------hHHHHhhhhhheecccchHH
Confidence 7654 46668888999999999999999999966543221111111 12233478999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 512 ACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 512 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
|...|.+++..+|.++.+..+.|.|++-+|+..+|++..+.+++..|...
T Consensus 271 a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 271 AHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999753
No 235
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.70 E-value=3.1e-07 Score=94.41 Aligned_cols=121 Identities=21% Similarity=0.271 Sum_probs=107.7
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 488 (713)
+-.++...+++++|+..+++..+..|+ +...++.++...++-.+|+..+.+++...|.+...+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~--- 238 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE-------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLN--- 238 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc-------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH---
Confidence 345556678999999999998887664 5566899999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 489 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 554 (713)
..+..+...++++.|+...++++.+.|++...|+.|+.+|..+|++++|+..+..+-
T Consensus 239 ---------~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 239 ---------LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 589999999999999999999999999999999999999999999999998776443
No 236
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.69 E-value=1.4e-07 Score=81.96 Aligned_cols=92 Identities=10% Similarity=0.127 Sum_probs=74.6
Q ss_pred HHHHHhhcC-CceEEEeec--CchhHHHHHHHH---HHHHhC-CCcEEEEEeCCCc-------------HhhHHHcCCCc
Q 005125 621 RFRHFVTSP-GMAVVLFCS--KAEHKQVLQLME---QVCKRF-PSVNFLKVEVEDH-------------PYIAKSEGVSS 680 (713)
Q Consensus 621 ~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~---~l~~~~-p~~~~~~v~~d~~-------------~~~~~~~~v~~ 680 (713)
.+....... ..+++.|++ |++|+.+.+.+. .+...+ .++.++.+|++.. ..++..++|.+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 455566666 788888999 999999998774 444444 3578899998864 68899999999
Q ss_pred ccEEEEEEC--CeEeeeecCC-CHHHHHHHHHhhh
Q 005125 681 IPAFKIYKN--GSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 681 ~Pt~~~~~~--g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+||++||.. |+.+.++.|. +.+.+.++|+.+.
T Consensus 85 ~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 85 TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred ccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 999999986 5999999999 8899999998763
No 237
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=3.1e-05 Score=82.77 Aligned_cols=184 Identities=18% Similarity=0.151 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
+.-...|......|..++|+.+|.+.-+.| .+-..|...|.|++|.+..+.-=.++ .-..|++.|..+..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEA 870 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHh
Confidence 444566777888999999999999976543 45678888999999998776533332 24578999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 419 (713)
.++.+.|+++|+++-. +. .++...+.++..+++.|-+- ..+ +.+|...|..+...|+.
T Consensus 871 r~Di~~AleyyEK~~~---ha--------------fev~rmL~e~p~~~e~Yv~~---~~d--~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGV---HA--------------FEVFRMLKEYPKQIEQYVRR---KRD--ESLYSWWGQYLESVGEM 928 (1416)
T ss_pred hccHHHHHHHHHhcCC---hH--------------HHHHHHHHhChHHHHHHHHh---ccc--hHHHHHHHHHHhcccch
Confidence 9999999999998743 11 01111122223333322211 111 24555666666777777
Q ss_pred HHHHHHhhccccC-----------ChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 420 QEAHDSYNKSPKF-----------CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 420 ~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
+.|+.+|..|-.. ..+..........+-.+.|.+|..|...|++.+|+..|.+|-.
T Consensus 929 daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 929 DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7777776665211 1111111111123456788999999999999999999987643
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.65 E-value=1.2e-05 Score=75.72 Aligned_cols=193 Identities=19% Similarity=0.138 Sum_probs=141.2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAH 330 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 330 (713)
..+..|+..|...++.|+|++|+..|+.+....|.. ..+...++.++.+.+++++|+...++.+.+.|.+ ..++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 456789999999999999999999999999988865 5688999999999999999999999999998877 4567
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh
Q 005125 331 HRLAMLYFRL--------GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA 402 (713)
Q Consensus 331 ~~la~~~~~~--------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 402 (713)
+..|.+++.. .-..+|+..|+..+. ..|+.......-.. +-....++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~-ryPnS~Ya~dA~~~----------i~~~~d~L-------------- 166 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ-RYPNSRYAPDAKAR----------IVKLNDAL-------------- 166 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHH-HCCCCcchhhHHHH----------HHHHHHHH--------------
Confidence 7888876643 123456777777777 77775422111100 00011111
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
...-..+|..|.+.|.+..|+..++.+++..|+.. ..-.++..+..+|..+|-.++|...-.-.-...|++.
T Consensus 167 A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~-------~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 167 AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS-------AVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc-------chHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 12223468899999999999999999988766532 2456788899999999999999776544333445543
No 239
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.64 E-value=2.5e-07 Score=95.08 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=105.0
Q ss_pred CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 245 GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324 (713)
Q Consensus 245 ~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 324 (713)
+.|+.+++++...+|++...++.++...++-.+|+..+++++...|.+...+...+..+...++++.|+...++++.+.|
T Consensus 186 ~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP 265 (395)
T PF09295_consen 186 DEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSP 265 (395)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 67999999987888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 325 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+....|+.|+.+|..+|+++.|+..++.+-.
T Consensus 266 ~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 266 SEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999999999988876554
No 240
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.64 E-value=3.7e-05 Score=83.46 Aligned_cols=231 Identities=15% Similarity=0.121 Sum_probs=150.3
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 269 AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVS 348 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 348 (713)
....++|.+|+....+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 34678999999999999999999999999999999999999999988887777788888899999999999999999999
Q ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHH----
Q 005125 349 HYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHD---- 424 (713)
Q Consensus 349 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~---- 424 (713)
+|++++. .+|.. ...+.....+.+.+.|.+--+..-+..+..|...-..|..+..++......++...
T Consensus 99 ~Ye~~~~-~~P~e-------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 99 LYERANQ-KYPSE-------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHHHh-hCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999 99983 34445555566666666555555555556777755555555555554444333332
Q ss_pred -----HhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 425 -----SYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDA-AQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 425 -----~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
..++.++.. .. + ...+++. ..-.++..+|++++|.+.+..- .+..+........ .
T Consensus 171 ~LA~~m~~~~l~~~-gk----~--~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~-----------~ 231 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKK-GK----I--ESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLEN-----------K 231 (932)
T ss_pred HHHHHHHHHHhccC-Cc----c--chHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHH-----------H
Confidence 223333222 00 0 0111111 1223445566677776666322 2222222222211 2
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
.+..+...++|.+-.+...+++...+++
T Consensus 232 ~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 232 KLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 4455556666666666666666666655
No 241
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.63 E-value=1.8e-07 Score=72.53 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=57.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 266 GNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 266 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
...|+..++|++|+.++++++..+|+++..+..+|.++..+|++.+|+..|+++++..|++..+...++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 467788888888888888888888888888888888888888888888888888888888877765554
No 242
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.63 E-value=2.4e-07 Score=81.49 Aligned_cols=93 Identities=24% Similarity=0.363 Sum_probs=84.4
Q ss_pred cccccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccE
Q 005125 606 DMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPA 683 (713)
Q Consensus 606 ~~~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt 683 (713)
..|+| ....+.+..+|-+.......+|..|+- ...|+.+..-++.+++++.+..|++|+++..|-++..++|..+|+
T Consensus 62 ~~GhG-~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~ 140 (211)
T KOG1672|consen 62 SKGHG-EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPT 140 (211)
T ss_pred HcCCc-eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeee
Confidence 45666 567777888888888888888888888 689999999999999999999999999999999999999999999
Q ss_pred EEEEECCeEeeeecCC
Q 005125 684 FKIYKNGSRVKEIPGH 699 (713)
Q Consensus 684 ~~~~~~g~~~~~~~g~ 699 (713)
+.+|++|..++.++|+
T Consensus 141 v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 141 VALFKNGKTVDYVVGF 156 (211)
T ss_pred EEEEEcCEEEEEEeeH
Confidence 9999999999999987
No 243
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.62 E-value=5.1e-06 Score=73.03 Aligned_cols=146 Identities=23% Similarity=0.180 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHH
Q 005125 386 DLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFED 465 (713)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 465 (713)
..+....+.+...|.. .-.+.+|..+.++|++.||...|++++.-.- ..++..+..++...+..+++..
T Consensus 74 R~~Rea~~~~~~ApTv--qnr~rLa~al~elGr~~EA~~hy~qalsG~f---------A~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 74 RHLREATEELAIAPTV--QNRYRLANALAELGRYHEAVPHYQQALSGIF---------AHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHHHHHHHhhchhH--HHHHHHHHHHHHhhhhhhhHHHHHHHhcccc---------CCCHHHHHHHHHHHHhhccHHH
Confidence 3344444455555554 5567789999999999999999999876321 1466788889999999999999
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 005125 466 AVKTAQDAAQIDPNN--KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 466 A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 543 (713)
|...+++..+.+|.. ++... .+|..+...|++.+|...|+.++...| .+......+..+.++|+.
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~L------------l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHL------------LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRL 209 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchH------------HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcch
Confidence 999999999988764 33333 479999999999999999999999998 577778889999999998
Q ss_pred HHHHHHHHHHHH
Q 005125 544 EKAVEDCTAALI 555 (713)
Q Consensus 544 ~~A~~~~~~al~ 555 (713)
++|..-+....+
T Consensus 210 ~ea~aq~~~v~d 221 (251)
T COG4700 210 REANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHHHH
Confidence 888776655443
No 244
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=6.4e-06 Score=75.20 Aligned_cols=151 Identities=16% Similarity=0.122 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA-GRFEDAVKTAQDAAQIDPNNKE 482 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~ 482 (713)
..|...+.+|.+ .+.++|+.++++++++..+...-. ..+..+..+|.+|... .++++|+.+|+++-+.......
T Consensus 75 t~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~----~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees 149 (288)
T KOG1586|consen 75 TTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFT----MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES 149 (288)
T ss_pred HHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHH----HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh
Confidence 444444444444 488888888888887665432211 2344566789999875 8999999999999876544322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 483 VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS-------VLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 483 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
.-. .-.++...+......++|.+|+..|++.....-++. ..++.-|.|++...+.-.+...+++..+
T Consensus 150 ~ss------ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 150 VSS------ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred hhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 111 011222466677788999999999999887655543 3456678899998999999999999999
Q ss_pred hCCCChHHHH
Q 005125 556 VMPSYSKARL 565 (713)
Q Consensus 556 ~~p~~~~a~~ 565 (713)
++|.+...+-
T Consensus 224 ~dP~F~dsRE 233 (288)
T KOG1586|consen 224 LDPAFTDSRE 233 (288)
T ss_pred cCCcccccHH
Confidence 9999887665
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.60 E-value=2.7e-06 Score=70.04 Aligned_cols=100 Identities=22% Similarity=0.307 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY----HRAHHRLAML 336 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~ 336 (713)
.+-..|..+...|+.+.|++.|.+++.+.|..+.+|++++.++...|+.++|++.+++++++.-+. -.++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 466778889999999999999999999999999999999999999999999999999999996554 4578899999
Q ss_pred HHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|..+|+.+.|...|+.+.+ +....
T Consensus 125 yRl~g~dd~AR~DFe~AA~-LGS~F 148 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQ-LGSKF 148 (175)
T ss_pred HHHhCchHHHHHhHHHHHH-hCCHH
Confidence 9999999999999999988 66654
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.59 E-value=1.3e-05 Score=75.34 Aligned_cols=186 Identities=13% Similarity=0.037 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh--HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccC
Q 005125 368 LHKHLTKCNEARELKRWNDLLKETQNVISFGADSA--PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAG 445 (713)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 445 (713)
...++..+......|+|.+|+..|+.+....|... ..+...++.++.+.+++++|+...++-+.+.|.+.+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n------- 106 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN------- 106 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-------
Confidence 35577788888889999999999999999887653 578889999999999999999999999999997654
Q ss_pred cHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHH---HHHHHH--HHHHHHHHHHHHHcccHHHH
Q 005125 446 GAYLLIVRAQVYIAAGR--------FEDAVKTAQDAAQIDPNNKEVIKG---VKMAKA--MASARLRGNLLFKASKYKEA 512 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~---~~~~~~--~~~~~~lg~~~~~~g~~~~A 512 (713)
..++++..|.+++..=+ ..+|+..|+..+...|+..-+-.. +..+.. ..--...|..|.+.|.+..|
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 57788999998876322 367888999999999987543322 222221 22234689999999999999
Q ss_pred HHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 513 CYAYSEGLEHEAYN---SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 513 ~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-.-.-.|++
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 99999999987765 4678888899999999999987655444444544
No 247
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.59 E-value=2.2e-07 Score=72.08 Aligned_cols=67 Identities=31% Similarity=0.454 Sum_probs=62.5
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+..++...++|++|++++++++.++|+++..|..+|.++..+|++++|+..|+++++..|++..+..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999998876643
No 248
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.59 E-value=3.4e-07 Score=73.24 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=62.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHH
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLE 705 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 705 (713)
....+.+|.+ |++|..+.++++++++.+|++.+..+|+++.++++..++|.++|+|++ +|+.+.. |. +.++|.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~~ 87 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEIL 87 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHHh
Confidence 3445666777 999999999999999999999999999999999999999999999964 8987774 66 555543
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.58 E-value=2.3e-06 Score=73.30 Aligned_cols=105 Identities=19% Similarity=0.204 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAH 330 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 330 (713)
..+..++..|...+..|+|++|++.|+.+....|.. ..+...++.+|+..+++++|+..+++.++++|.+ ..++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 456789999999999999999999999999998864 5788999999999999999999999999999987 5689
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHhhhhccccH
Q 005125 331 HRLAMLYFRLGE---------------AEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 331 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~~p~~~ 362 (713)
+..|.+++.+.. ...|+..|++.+. ..|+..
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~-~yP~S~ 133 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR-RYPNSE 133 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH-HCcCCh
Confidence 999999999877 8889999999999 888875
No 250
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.57 E-value=4.2e-07 Score=76.68 Aligned_cols=89 Identities=12% Similarity=0.198 Sum_probs=71.1
Q ss_pred hHHHHHhh---cCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-cHhhHH-HcCCCcccEEEEEECC
Q 005125 620 ERFRHFVT---SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-HPYIAK-SEGVSSIPAFKIYKNG 690 (713)
Q Consensus 620 ~~~~~~l~---~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-~~~~~~-~~~v~~~Pt~~~~~~g 690 (713)
..|..++. ....+++.|++ |++|+++.|.+++++..+. ++.++.||++. ...++. .++|..+||+++|.+|
T Consensus 9 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~ 88 (109)
T cd02993 9 AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKN 88 (109)
T ss_pred HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCC
Confidence 46666553 35678888888 9999999999999998874 48899999997 566665 5899999999999876
Q ss_pred -eEeeeecCC--CHHHHHHHH
Q 005125 691 -SRVKEIPGH--QCELLEKSV 708 (713)
Q Consensus 691 -~~~~~~~g~--~~~~~~~~~ 708 (713)
.......|. +.+.|..||
T Consensus 89 ~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 89 SRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCCceeccCCCCCHHHHHhhC
Confidence 456678884 888888775
No 251
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.57 E-value=3.4e-07 Score=87.68 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=69.3
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEK 706 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 706 (713)
+..+++|++ |++|..+.+.+++++..+|.+.+..+|++..+.++..++|.++||++++++|.. +.|. +.++|.+
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~ 210 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLE 210 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHH
Confidence 445555888 999999999999999888889999999999999999999999999999988864 8888 8899999
Q ss_pred HHHh
Q 005125 707 SVKL 710 (713)
Q Consensus 707 ~~~~ 710 (713)
+|..
T Consensus 211 ~l~~ 214 (215)
T TIGR02187 211 YILS 214 (215)
T ss_pred HHHh
Confidence 9875
No 252
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=7.1e-05 Score=69.71 Aligned_cols=243 Identities=14% Similarity=0.129 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------CC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINS-------------SK------ATYRSNKSAALIGLGRQIEALVECKEA 319 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 319 (713)
...|...-.++.+...+++|..-+...-++|. +. .......|.+...+|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34566666677777888888777666555432 21 123344567777888888887766655
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
...- ..+-..+......+..++.+++-+. ...+.....+..++.|.-.+..+.+.++.+|
T Consensus 149 ~~~V-------~~ii~~~e~~~~~ESsv~lW~KRl~-------------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~ 208 (366)
T KOG2796|consen 149 KTVV-------SKILANLEQGLAEESSIRLWRKRLG-------------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYP 208 (366)
T ss_pred HHHH-------HHHHHHHHhccchhhHHHHHHHHHH-------------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence 4321 1122223333334666666766555 3455566677778889999999999999998
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
+..+.....+|.+-+..|+.+.|..+|++.-+... .+.+......++.+.+.+|.-.+++.+|...|.+++..+|.
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~----kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~ 284 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ----KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR 284 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh----hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC
Confidence 77788899999999999999999999996643221 22222345567888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC---HHHHHHHHHHH
Q 005125 480 NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN---SVLLCNRAACR 537 (713)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 537 (713)
++.+.+ +.|.++.-.|+..+|++..+.+++..|.. -.+.+||..+|
T Consensus 285 ~~~a~N------------nKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 285 NAVANN------------NKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred chhhhc------------hHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 998887 79999999999999999999999999964 23455555443
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.56 E-value=3.2e-06 Score=69.55 Aligned_cols=102 Identities=20% Similarity=0.193 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC--
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN-- 526 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 526 (713)
.+-..|..+...|+.+.|++.|.+++.+.|..+.+++ +.+..+.-+|+.++|++.+++++++.-..
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayN------------NRAQa~RLq~~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYN------------NRAQALRLQGDDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhc------------cHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence 3445688899999999999999999999999999998 89999999999999999999999986544
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 527 --SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 527 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
-.++..+|.+|..+|+-+.|...|+.|-++...+..
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 457889999999999999999999999999876644
No 254
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.55 E-value=4.2e-07 Score=92.55 Aligned_cols=70 Identities=21% Similarity=0.203 Sum_probs=66.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATY---RSNKSAALIGLGRQIEALVECKEAIRID 323 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (713)
.+|+++++++++|..|+..|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999854 9999999999999999999999999973
No 255
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.53 E-value=5.7e-07 Score=74.83 Aligned_cols=91 Identities=11% Similarity=0.164 Sum_probs=72.3
Q ss_pred chhHHHHHhhcCCceEEEeec----Cc---hhHHHHHHHHHHHHhCCCcEEEEEeCC-----CcHhhHHHcCCC--cccE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS----KA---EHKQVLQLMEQVCKRFPSVNFLKVEVE-----DHPYIAKSEGVS--SIPA 683 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~----cg---~c~~~~~~~~~l~~~~p~~~~~~v~~d-----~~~~~~~~~~v~--~~Pt 683 (713)
+...|...+.....++|.|++ || .|+.+.|-+...+ ..+.+.+||++ +...|+.+++|. +.||
T Consensus 7 ~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa---~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPT 83 (116)
T cd03007 7 DTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT---DDLLVAEVGIKDYGEKLNMELGERYKLDKESYPV 83 (116)
T ss_pred ChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc---CceEEEEEecccccchhhHHHHHHhCCCcCCCCE
Confidence 456888888888888888888 77 6666666554433 24999999994 567899999999 9999
Q ss_pred EEEEECCe--EeeeecCC--CHHHHHHHHHhh
Q 005125 684 FKIYKNGS--RVKEIPGH--QCELLEKSVKLY 711 (713)
Q Consensus 684 ~~~~~~g~--~~~~~~g~--~~~~~~~~~~~~ 711 (713)
+.+|++|. ......|. +.+.|.+||.+.
T Consensus 84 l~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 84 IYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred EEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99999985 44567773 899999999864
No 256
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.52 E-value=4.6e-07 Score=92.24 Aligned_cols=69 Identities=23% Similarity=0.211 Sum_probs=65.5
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHH
Q 005125 476 IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL---LCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 476 ~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
.+|+++.++. ++|.+|+.+|+|++|+.+|+++++++|++..+ |+|+|.+|..+|++++|+.++++
T Consensus 70 ~dP~~a~a~~------------NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 70 ADVKTAEDAV------------NLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5788888888 89999999999999999999999999999854 99999999999999999999999
Q ss_pred HHHh
Q 005125 553 ALIV 556 (713)
Q Consensus 553 al~~ 556 (713)
|+++
T Consensus 138 ALel 141 (453)
T PLN03098 138 ALRD 141 (453)
T ss_pred HHHh
Confidence 9998
No 257
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.52 E-value=4.4e-07 Score=69.18 Aligned_cols=64 Identities=23% Similarity=0.276 Sum_probs=31.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005125 459 AAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRA 534 (713)
Q Consensus 459 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 534 (713)
..|++++|+..|++++..+|++..++. .+|.++...|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARL------------LLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHH------------HHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 344555555555555555555555444 3555555555555555555555555554444444333
No 258
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.50 E-value=1.3e-05 Score=70.51 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=119.3
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
+.=+++.++.-..+.+. ..|.. ...+.++....++|++.+|...|++++.---.+.+..+..++...+..++
T Consensus 68 q~ldP~R~~Rea~~~~~-~ApTv-------qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 68 QKLDPERHLREATEELA-IAPTV-------QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HhcChhHHHHHHHHHHh-hchhH-------HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 33344444444444444 44543 56778888888999999999999998875444446788889999999999
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
+.+|...+++..+..|.. ..++....+|.+|...|++.+|...|+.++...|.......
T Consensus 140 ~A~a~~tLe~l~e~~pa~--------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~------------- 198 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAF--------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY------------- 198 (251)
T ss_pred HHHHHHHHHHHhhcCCcc--------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH-------------
Confidence 999999999999888754 45667888899999999999999999999999988654332
Q ss_pred HHHHHHHcccHHHHHHHHHHHhc
Q 005125 499 RGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
.+..+.++|+.++|..-|....+
T Consensus 199 Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 199 YAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcchhHHHHHHHHHHH
Confidence 68888899988888776655443
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.49 E-value=3.9e-06 Score=79.70 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHRL 333 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 333 (713)
.-+|..|..++..|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++-.|++ +++++.|
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 448999999999999999999999999999976 6799999999999999999999999999988776 7899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+...+|+.++|...|+++++ ..|...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k-~YP~t~ 249 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK-RYPGTD 249 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH-HCCCCH
Confidence 9999999999999999999999 888875
No 260
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=2.4e-05 Score=78.88 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRA-IAINSS--------KATYRSNKSAALIGLGRQIEALVECKEAIR-I-- 322 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-- 322 (713)
..+.+.+++..+..++..|+|.+|.+.+... +...|. ...+|+++|.+++++|.|.-+..+|.+|+. .
T Consensus 236 a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 236 AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888888888876543 222332 234567888888888888888888888885 1
Q ss_pred ------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 323 ------DP---------CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 323 ------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
.| ...+.+++.|..|...|++-.|.++|.++.. ....++
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~-vfh~nP 369 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH-VFHRNP 369 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH-HHhcCc
Confidence 11 2356788888888888888888888888887 555554
No 261
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.48 E-value=0.00035 Score=68.94 Aligned_cols=269 Identities=17% Similarity=0.087 Sum_probs=184.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKA--TYRSNKSAALIGLGRQIEALVECKEAIRIDPC-YHRAHHRLAMLYF 338 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 338 (713)
-..-|.+....||-..|...-.++-++-..+. -++..-+..-...|+++.|.+-|+-++. +|+ ..-.+..|-.--.
T Consensus 87 ALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAq 165 (531)
T COG3898 87 ALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQ 165 (531)
T ss_pred HHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHH
Confidence 34456666678899999998888875544443 3444456677778999999999998875 333 1222333333344
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHc---CCCChH--HHHHHHHHHH
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF---GADSAP--QVYALQAEAL 413 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~--~~~~~la~~~ 413 (713)
.+|+.+.|..+-+++.. ..|.-. .............|+|+.|++..+..... .++... .+-.+-+...
T Consensus 166 r~GareaAr~yAe~Aa~-~Ap~l~------WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 166 RLGAREAARHYAERAAE-KAPQLP------WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred hcccHHHHHHHHHHHHh-hccCCc------hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 78999999999999998 888764 33344455667789999999998866543 222111 1111112222
Q ss_pred H-HccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 414 L-RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492 (713)
Q Consensus 414 ~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 492 (713)
. -.-+...|...-.+++++.|+... .-..-+..++..|+..++-..++.+.+..|.- +.+.
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvP----------aav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~ia~------- 300 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVP----------AAVVAARALFRDGNLRKGSKILETAWKAEPHP-DIAL------- 300 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccch----------HHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-HHHH-------
Confidence 2 223577888888888888887544 34456888999999999999999999988864 3332
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH---hccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEG---LEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
..++.+.|+ .++.-++++ ..+.|++.+....++..-+.-|++..|....+.+..+.|...-..+
T Consensus 301 -------lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lL 367 (531)
T COG3898 301 -------LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLL 367 (531)
T ss_pred -------HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHH
Confidence 223334444 444444443 4568999999999999999999999999999999999997654444
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.48 E-value=2.3e-06 Score=81.27 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Q 005125 448 YLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK---EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524 (713)
Q Consensus 448 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 524 (713)
.-.|+.|.-+++.|+|.+|...|..-++..|+.. .+++ -||.+++.+|+|++|...|..+++-.|
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y------------WLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYY------------WLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHH------------HHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 3378899999999999999999999999999864 4444 499999999999999999999999887
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 525 YN---SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 525 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+. +++++.||.|...+|+.++|...|+++++..|+...+..
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 65 789999999999999999999999999999999877655
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.48 E-value=4.7e-06 Score=71.44 Aligned_cols=128 Identities=18% Similarity=0.197 Sum_probs=96.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 524 (713)
..+..++..|...+..|+|++|++.|+......|-.+.+-. +...+|.++++.++|++|+..+++-++++|
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~q---------AqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQ---------AQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 35668899999999999999999999999998887654432 223699999999999999999999999999
Q ss_pred CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 525 YNS---VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 525 ~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
.++ .+++.+|.+++.+.. ..+.... ..+-.......|...|++.++..|++.-+..+
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~-----~~~~~~~--~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDE-----GSLQSFF--RSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhh-----hHHhhhc--ccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 874 578889988887765 1122222 22222233357888888888888888766544
No 264
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.48 E-value=1.5e-06 Score=76.72 Aligned_cols=105 Identities=22% Similarity=0.262 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc----------ccHHHHHHHHHHHhccCCCCHHHHHH
Q 005125 463 FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA----------SKYKEACYAYSEGLEHEAYNSVLLCN 532 (713)
Q Consensus 463 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~ 532 (713)
|+.|.+.++.....+|.+.+.+. +-|.++..+ .-+++|+.-|++||.++|+...++++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~------------~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLT------------NWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHH------------HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHH------------HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 68899999999999999998877 344444443 45688999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 533 RAACRSKLGQYEKAVEDCTAALIVMPSY--SKARLEAAIQDYEMLIREIPGNEEVGRALFEA 592 (713)
Q Consensus 533 la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 592 (713)
+|.+|..++. +.|+. ...++++|..+|++|...+|+|......|.-+
T Consensus 75 lGnA~ts~A~-------------l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 75 LGNAYTSLAF-------------LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHH-------------H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHh-------------hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999987663 12222 22334667778888888888887777666544
No 265
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.46 E-value=3.5e-07 Score=77.56 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=63.6
Q ss_pred hhHHHHHhhcCC-ceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCC--CcHhhHHHcCCCcccEEEEEEC
Q 005125 619 NERFRHFVTSPG-MAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVE--DHPYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 619 ~~~~~~~l~~~~-~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d--~~~~~~~~~~v~~~Pt~~~~~~ 689 (713)
...|...+.... .+++.|++ |++|+.+.|.|++++..+. .+.|..+|++ ..+.++..++|.++||+.+|+.
T Consensus 8 ~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~ 87 (114)
T cd02992 8 AASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPP 87 (114)
T ss_pred HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECC
Confidence 456777765544 67777888 9999999999999988652 3788888864 5778999999999999999998
Q ss_pred CeEeeeecCC
Q 005125 690 GSRVKEIPGH 699 (713)
Q Consensus 690 g~~~~~~~g~ 699 (713)
|. .....|.
T Consensus 88 ~~-~~~~~~~ 96 (114)
T cd02992 88 FS-KEATDGL 96 (114)
T ss_pred CC-ccCCCCC
Confidence 87 4445444
No 266
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.46 E-value=2.7e-06 Score=82.63 Aligned_cols=102 Identities=23% Similarity=0.391 Sum_probs=76.0
Q ss_pred cccccceeecchhHHHHHhhcCC---ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCccc
Q 005125 608 KFGSNLVFVSSNERFRHFVTSPG---MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIP 682 (713)
Q Consensus 608 ~~g~~i~~~~~~~~~~~~l~~~~---~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~P 682 (713)
.||. +..+...+.|...+.... .+|+.|+. +..|..+...|..|+.+||.+.|++|.....+ +...|.+..+|
T Consensus 123 ~fG~-v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LP 200 (265)
T PF02114_consen 123 RFGE-VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLP 200 (265)
T ss_dssp ---S-EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-S
T ss_pred cCce-EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCC
Confidence 4774 456666678888775432 35556777 88999999999999999999999999998887 66788999999
Q ss_pred EEEEEECCeEeeeecCC--------CHHHHHHHHHhh
Q 005125 683 AFKIYKNGSRVKEIPGH--------QCELLEKSVKLY 711 (713)
Q Consensus 683 t~~~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 711 (713)
|+++|++|..++.++|. +.+.|+.+|.++
T Consensus 201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999999988765 456788888766
No 267
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.1e-07 Score=82.51 Aligned_cols=96 Identities=28% Similarity=0.469 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
+-+...|+.++....|..|+.+|.++|.++|..+.+|.+.+.||+++.+|+.+...++++++++|+...+++.+|.++..
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhh
Q 005125 340 LGEAEKAVSHYKKSSS 355 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~ 355 (713)
...|.+|+.++.++..
T Consensus 91 s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYS 106 (284)
T ss_pred hccccHHHHHHHHHHH
Confidence 9999999999999976
No 268
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.45 E-value=1.5e-06 Score=90.88 Aligned_cols=94 Identities=13% Similarity=0.190 Sum_probs=75.3
Q ss_pred chhHHHHHhh---cCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcH-hh-HHHcCCCcccEEEEEE
Q 005125 618 SNERFRHFVT---SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHP-YI-AKSEGVSSIPAFKIYK 688 (713)
Q Consensus 618 ~~~~~~~~l~---~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~-~~-~~~~~v~~~Pt~~~~~ 688 (713)
+..+|...+. ....+++.|++ |++|+.+.|.|+++++++. ++.|+.||+|..+ .+ ...++|.++|||+||+
T Consensus 357 ~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk 436 (463)
T TIGR00424 357 SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFP 436 (463)
T ss_pred CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEE
Confidence 4457888764 45677888999 9999999999999999884 3889999988653 34 4689999999999999
Q ss_pred CCe-EeeeecC-C-CHHHHHHHHHhh
Q 005125 689 NGS-RVKEIPG-H-QCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~-~~~~~~g-~-~~~~~~~~~~~~ 711 (713)
+|. ....+.| . +.+.|..||+..
T Consensus 437 ~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 437 KHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 985 3345664 4 999999999754
No 269
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00016 Score=66.40 Aligned_cols=185 Identities=16% Similarity=0.129 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINS-----S-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------HR 328 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 328 (713)
.+..-|+.|....+|..|=..|-++-+..- + -+..|...+.||.. .+..+|+.++++++++..+. +.
T Consensus 36 l~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk 114 (288)
T KOG1586|consen 36 LYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAK 114 (288)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 456667788888888888888888866521 1 24455555666554 59999999999999986554 33
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 005125 329 AHHRLAMLYFRL-GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA 407 (713)
Q Consensus 329 ~~~~la~~~~~~-g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 407 (713)
.+..+|.+|... .++++|+.+|+++-+ ....+......-..++..
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae-~yk~ees~ssANKC~lKv--------------------------------- 160 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAE-YYKGEESVSSANKCLLKV--------------------------------- 160 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHH-HHcchhhhhhHHHHHHHH---------------------------------
Confidence 455788888765 888889999988877 444433222222233333
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
+..-..+++|.+|+..|++.....-++...-+ ..-..++.-|.|++...+.-.+...+++-.+++|...+...
T Consensus 161 --A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy---s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 161 --AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY---SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhccchHHHh---HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 44444445555555555554332222111000 01224455678888888888888888888889998766553
No 270
>PTZ00102 disulphide isomerase; Provisional
Probab=98.44 E-value=1.2e-06 Score=95.82 Aligned_cols=94 Identities=18% Similarity=0.350 Sum_probs=82.9
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+...|...+......++.|++ |++|+++.|.+.+++..+ +.+.++.||++..+.++..++|.++||+.+|++|.
T Consensus 38 ~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 38 TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc
Confidence 345788888777888888999 999999999999877543 56999999999999999999999999999999998
Q ss_pred EeeeecCC-CHHHHHHHHHhhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
.+ ++.|. +.+.|.+||++..
T Consensus 118 ~~-~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 118 PV-NYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred eE-EecCCCCHHHHHHHHHHhh
Confidence 88 88898 9999999998763
No 271
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.44 E-value=0.0009 Score=73.08 Aligned_cols=295 Identities=10% Similarity=-0.019 Sum_probs=173.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|+..-+....|..++++|+.++|..+++..-...+++...+..+-.+|..++++++|..+|++++..+|. .+..+.+
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~l 116 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHL 116 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence 455556667777888888888888887777766667777778888888888888888888888888888888 7777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh----cHHHHHHHHHHHHHcC-CCChHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELK----RWNDLLKETQNVISFG-ADSAPQVYAL 408 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~al~~~-p~~~~~~~~~ 408 (713)
-.+|.+.+.|.+-.+.--+..+ .-|..+.-...+...+..+....... -..-|....++.+... +-....-...
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L 195 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL 195 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH
Confidence 7888887777664444444444 55555421111111111111000000 1112333444555444 2221111222
Q ss_pred HHHHHHHccCHHHHHHHhhccc-cCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-
Q 005125 409 QAEALLRLQRHQEAHDSYNKSP-KFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG- 486 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~- 486 (713)
.-.++..+|++++|.+.+..-+ +..+. .+..........+...+++.+-.+...+++..++++...+.-
T Consensus 196 yl~iL~~~~k~~eal~~l~~~la~~l~~---------~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~s 266 (932)
T KOG2053|consen 196 YLLILELQGKYQEALEFLAITLAEKLTS---------ANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDS 266 (932)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhccc---------cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHH
Confidence 2456778899999999984322 11111 223344456777888999999999999999999987211110
Q ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 487 VKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS-VLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+..+....--...+..+-..+..+..++...+.+......+ -++..+-.-+...|+.+++...|-+-+...|-
T Consensus 267 v~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpc 340 (932)
T KOG2053|consen 267 VFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPC 340 (932)
T ss_pred HHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcH
Confidence 00000000000123334445566666666677666533333 33444444446789999988777665554444
No 272
>PLN02309 5'-adenylylsulfate reductase
Probab=98.43 E-value=1.8e-06 Score=90.32 Aligned_cols=94 Identities=15% Similarity=0.213 Sum_probs=76.4
Q ss_pred chhHHHHHhh---cCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC-CcHhhHH-HcCCCcccEEEEEE
Q 005125 618 SNERFRHFVT---SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE-DHPYIAK-SEGVSSIPAFKIYK 688 (713)
Q Consensus 618 ~~~~~~~~l~---~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d-~~~~~~~-~~~v~~~Pt~~~~~ 688 (713)
+.++|...+. ....+++.|++ |++|+.+.|.|+++++.+. ++.|+.+|++ ....++. .++|.++|||+||+
T Consensus 351 t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~ 430 (457)
T PLN02309 351 SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFP 430 (457)
T ss_pred CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEe
Confidence 4457776653 46678888999 9999999999999999873 4999999999 7777776 69999999999999
Q ss_pred CCeE-eeeecC-C-CHHHHHHHHHhh
Q 005125 689 NGSR-VKEIPG-H-QCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~-~~~~~g-~-~~~~~~~~~~~~ 711 (713)
+|.. ...+.| . +.+.|..||+..
T Consensus 431 ~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 431 KNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 8763 334654 3 999999999864
No 273
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.43 E-value=1.3e-06 Score=95.41 Aligned_cols=94 Identities=24% Similarity=0.451 Sum_probs=83.4
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+...|...+......++.|++ |++|+.+.|.+.++++.+ +.+.|+.||++..+.++..++|.++||+.+|++|+
T Consensus 7 ~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 7 TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGE 86 (462)
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCc
Confidence 456788888777788888999 999999999999887654 45999999999999999999999999999999998
Q ss_pred E-eeeecCC-CHHHHHHHHHhh
Q 005125 692 R-VKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 692 ~-~~~~~g~-~~~~~~~~~~~~ 711 (713)
. +..+.|. +.+.|.+||.+.
T Consensus 87 ~~~~~~~g~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 87 DSVSDYNGPRDADGIVKYMKKQ 108 (462)
T ss_pred cceeEecCCCCHHHHHHHHHHh
Confidence 8 7889998 999999999875
No 274
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=7.6e-07 Score=92.25 Aligned_cols=98 Identities=20% Similarity=0.356 Sum_probs=86.6
Q ss_pred eecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 615 FVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
...+.+.|...+....-.++.|++ ||+|+.+.|-+++.+... +.+..++||+.+...++.+++|.+.||+.+|+
T Consensus 28 l~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFr 107 (493)
T KOG0190|consen 28 LVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFR 107 (493)
T ss_pred EEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEe
Confidence 334567899999888999999999 999999999999877553 57999999999999999999999999999999
Q ss_pred CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+|.......|. ..+.|..|+++..
T Consensus 108 nG~~~~~Y~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 108 NGRSAQDYNGPREADGIVKWLKKQS 132 (493)
T ss_pred cCCcceeccCcccHHHHHHHHHhcc
Confidence 99986778888 9999999998753
No 275
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.37 E-value=4.7e-07 Score=71.22 Aligned_cols=62 Identities=31% Similarity=0.369 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 294 TYRSNKSAALIGLGRQIEALVECKEAIRI---D----PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
.++.++|.+|..+|++++|+.+|++++++ . |..+.++.++|.+|..+|++++|+++|+++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444444444444444444433 0 11133444555555555555555555555444
No 276
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.37 E-value=1.4e-06 Score=66.08 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=51.8
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
.+.+|++ |++|..+.++++++...++++.+..+|+++.++++..+++.++||+++ +|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~ 62 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKV 62 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEE
Confidence 3566777 999999999999999888889999999999999999999999999754 6654
No 277
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.35 E-value=6.6e-06 Score=72.75 Aligned_cols=87 Identities=29% Similarity=0.317 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 005125 275 FEDALALYDRAIAINSSKATYRSNKSAALIGLGR----------QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE-- 342 (713)
Q Consensus 275 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 342 (713)
|+.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|++||.++|+..++++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6889999999999999999999999988887644 4678888889999999999999999999987653
Q ss_pred ---------HHHHHHHHHHHhhhhccccH
Q 005125 343 ---------AEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 343 ---------~~~A~~~~~~al~~~~p~~~ 362 (713)
|++|..+|++|.. .+|.+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~-~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVD-EDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-H-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHh-cCCCcH
Confidence 7788889999999 999874
No 278
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.34 E-value=6e-07 Score=70.59 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAI---NS----SKATYRSNKSAALIGLGRQIEALVECKEAIRI 322 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 322 (713)
|.-+.++..+|.+|...|+|++|+.+|++++++ .+ ..+.++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445678999999999999999999999999976 22 23668999999999999999999999999976
No 279
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.31 E-value=4.5e-06 Score=64.77 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=51.6
Q ss_pred CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC--CHHHHHHHHH
Q 005125 639 KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH--QCELLEKSVK 709 (713)
Q Consensus 639 cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~~ 709 (713)
|++|+.+.|.++++.++++ .+.++.+| + +..+..++|.++||+++ +|+.+ +.|. ..++|.++|+
T Consensus 10 C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l~ 76 (76)
T TIGR00412 10 CANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEILK 76 (76)
T ss_pred CcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHhC
Confidence 9999999999999999985 36776666 2 33467799999999988 89887 7775 5588888763
No 280
>PTZ00102 disulphide isomerase; Provisional
Probab=98.29 E-value=2.7e-06 Score=93.08 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=80.3
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
...|...+ .....+++.|++ |++|+.+.|.+++++..+. .+.++++|++....++..++|+++||+.+|+.|..
T Consensus 364 ~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~ 443 (477)
T PTZ00102 364 GNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGER 443 (477)
T ss_pred ccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCc
Confidence 35677764 445668888998 9999999999999987763 48899999999999999999999999999998876
Q ss_pred e-eeecCC-CHHHHHHHHHhhh
Q 005125 693 V-KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 693 ~-~~~~g~-~~~~~~~~~~~~~ 712 (713)
+ .++.|. +.+.|.++|+++.
T Consensus 444 ~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 444 TPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred ceeEecCcCCHHHHHHHHHHcC
Confidence 5 478898 9999999998864
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.29 E-value=0.00027 Score=72.44 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 306 LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 306 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
..+...-++..++|++++|+.+.+|..||.-. ..-..+|.++|+++++
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvk 228 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVK 228 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHH
Confidence 34445555555555555555555555554311 1224455555555554
No 282
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.26 E-value=1.7e-06 Score=87.80 Aligned_cols=105 Identities=31% Similarity=0.390 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
+.+-..|..++.-++|+.|+..|.+||+++|+.+.++.+++.++...+++..|+..+.+|++++|....+|++.|.++..
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 34667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKA 365 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~ 365 (713)
++++.+|+..|+.... +.|++....
T Consensus 85 l~~~~~A~~~l~~~~~-l~Pnd~~~~ 109 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKK-LAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHHHHHhhh-cCcCcHHHH
Confidence 9999999999999999 999986433
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0004 Score=64.23 Aligned_cols=204 Identities=13% Similarity=0.046 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSK------ATYRSNKSAALIGLGRQIEALVECKEAIRI-----DPCYHR 328 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 328 (713)
..|..-+..|....+|++|..++.+|.+-..++ +.++-..+.....+..+.++..+|++|..+ .|+-+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 356777788888999999999999999765443 345566677777889999999999999887 344444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC----CC-ChH
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG----AD-SAP 403 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~-~~~ 403 (713)
.-...|--....-++++|+..|++++. +-..+......+..+-..+.++.....|.+|-..+.+-.... .- ..-
T Consensus 112 maleKAak~lenv~Pd~AlqlYqrala-vve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALA-VVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH-HHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 444445555677889999999999999 555444444555666667778888899998877766543321 11 111
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQ 471 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 471 (713)
..+.....+|+...+|..|..+|+..-++.. . ....+...+-+|-..| ..|+.++....+.
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~-f-----~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPA-F-----LKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCcc-c-----cChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 3455556677778899999999999655421 1 1112333444444333 5677777665553
No 284
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.4e-05 Score=73.48 Aligned_cols=92 Identities=29% Similarity=0.385 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 495 SARLRGNLLFKASKYKEACYAYSEGLEH--------EAYN----------SVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 495 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
.+...|+-++++|+|.+|...|+.|+.. .|.. ...+.|.+.|++..|+|-++++.+..++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3447899999999999999999999843 3433 456889999999999999999999999999
Q ss_pred CCCChHHHH------------HHHHHHHHHHHHhCCCCHHHH
Q 005125 557 MPSYSKARL------------EAAIQDYEMLIREIPGNEEVG 586 (713)
Q Consensus 557 ~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~ 586 (713)
+|++..|++ .+|.++|.++|+++|.-..+.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 999999998 899999999999999876543
No 285
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.21 E-value=7.4e-06 Score=89.92 Aligned_cols=100 Identities=10% Similarity=0.181 Sum_probs=80.5
Q ss_pred ceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHH---HHHHHhCCCcEEEEEeCCC----cHhhHHHcCCC
Q 005125 613 LVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLM---EQVCKRFPSVNFLKVEVED----HPYIAKSEGVS 679 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~p~~~~~~v~~d~----~~~~~~~~~v~ 679 (713)
.+.+.+.+++.+.+.. .+.+++.|++ |++|+.+.+.+ +++.+.+.++.++++|+++ ..+++++++|.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 3445566677765532 4567888999 99999998875 6777777789999999985 36788999999
Q ss_pred cccEEEEEE-CCeE--eeeecCC-CHHHHHHHHHhhh
Q 005125 680 SIPAFKIYK-NGSR--VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 680 ~~Pt~~~~~-~g~~--~~~~~g~-~~~~~~~~~~~~~ 712 (713)
++||+++|. +|+. +.++.|. +++++.++|++..
T Consensus 534 g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 534 GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 999999996 7887 4789998 9999999999864
No 286
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.004 Score=63.47 Aligned_cols=342 Identities=14% Similarity=0.025 Sum_probs=192.2
Q ss_pred CCCCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC---CchhhhHhh------cCCCC----HHHHHHHHH
Q 005125 201 HCPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS---GEFPQCISS------LNKLD----PEELKFMGN 267 (713)
Q Consensus 201 ~~~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~---~~a~~~~~~------~~~~~----~~~~~~lg~ 267 (713)
..|-.+.++|++++..+...|... .++. ....+|.++.... +-|...+++ .-|.. -++...++.
T Consensus 20 ~~PPkIkk~IkClqA~~~~~is~~-vear--t~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~ 96 (629)
T KOG2300|consen 20 SGPPKIKKCIKCLQAIFQFQISFL-VEAR--THLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAH 96 (629)
T ss_pred cCChhHHHHHHHHHHHhccCChHH-HHHH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHH
Confidence 445557799999999888776322 2211 3334666555444 446666655 12222 356677888
Q ss_pred HHHHhc-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC---CHHHHHHHHH--H
Q 005125 268 EAYNKA-RFEDALALYDRAIAINSSKA----TYRSNKSAALIGLGRQIEALVECKEAIRI-DPC---YHRAHHRLAM--L 336 (713)
Q Consensus 268 ~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~---~~~~~~~la~--~ 336 (713)
.|.... .+..|...+++++++....+ ..++.++.++.-..++..|++.+.--.+- ++- +....+.+.. +
T Consensus 97 lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~l 176 (629)
T KOG2300|consen 97 LHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLML 176 (629)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHH
Confidence 887776 78888888999988865544 35567788888888888888763321111 110 0111111111 1
Q ss_pred HHHc---CCHHHHHHHHHHHhhhhc--cccHHHHHHHH------------------------------------------
Q 005125 337 YFRL---GEAEKAVSHYKKSSSLAN--QKDIAKAEALH------------------------------------------ 369 (713)
Q Consensus 337 ~~~~---g~~~~A~~~~~~al~~~~--p~~~~~~~~~~------------------------------------------ 369 (713)
+... .+.+.+...+.+..+... |.+.+....+.
T Consensus 177 l~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~i 256 (629)
T KOG2300|consen 177 LIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKI 256 (629)
T ss_pred HHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccc
Confidence 1111 112222222222222000 10000000000
Q ss_pred ---------HH-----------HHHHHHHHHhhcHHHHHHHHHHHHHcCCC------ChH-------HHHHHHHHHHHHc
Q 005125 370 ---------KH-----------LTKCNEARELKRWNDLLKETQNVISFGAD------SAP-------QVYALQAEALLRL 416 (713)
Q Consensus 370 ---------~~-----------~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~-------~~~~~la~~~~~~ 416 (713)
.| +.-..--+..|-+++|.++.++++..... ..+ ..+..+..+-.-.
T Consensus 257 lgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~ 336 (629)
T KOG2300|consen 257 LGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVR 336 (629)
T ss_pred cCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 00 00001112346777777777777654211 111 2334456666678
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASA 496 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 496 (713)
|++.+|++....+.+..........-....+.+++.+|......+.++.|...|..|.+.-... +.+.. .-
T Consensus 337 ~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-dl~a~--------~n 407 (629)
T KOG2300|consen 337 GDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-DLQAF--------CN 407 (629)
T ss_pred CCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-HHHHH--------HH
Confidence 8999888887776544332222111122457788999999999999999999999998864332 22221 12
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYN----------SVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 497 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
.++|..|.+.|+-+.-.+.++. +.|.+ +.+++..|...+..+++.||...+.+.+++.
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 2788888887775554444443 33332 4567777888888999999999999888876
No 287
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00012 Score=67.58 Aligned_cols=182 Identities=14% Similarity=0.073 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 005125 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA 407 (713)
Q Consensus 328 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 407 (713)
..|..-+.+|...++|++|..++.++.+ ...++.........+-..+....++..|.++...++++
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA------------- 97 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA------------- 97 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------
Confidence 3445556677777788888888888776 55555444444444455555556666677776666665
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGV 487 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 487 (713)
...|...|..+-|-..+++|-+ .....+.++|+.+|++++.+-.........
T Consensus 98 --s~lY~E~GspdtAAmaleKAak-------------------------~lenv~Pd~AlqlYqralavve~~dr~~ma- 149 (308)
T KOG1585|consen 98 --SELYVECGSPDTAAMALEKAAK-------------------------ALENVKPDDALQLYQRALAVVEEDDRDQMA- 149 (308)
T ss_pred --HHHHHHhCCcchHHHHHHHHHH-------------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHH-
Confidence 4456666766666666665533 234557899999999988765444333221
Q ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 488 KMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH------EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 488 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
...+...+.++.+..+|++|-..+.+-... .+.....+...-.+|+...+|..|..+++..-++
T Consensus 150 -----~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 150 -----FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred -----HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 122335888999999999998887764322 2333445666666777777999999999876654
No 288
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=6.7e-05 Score=69.14 Aligned_cols=103 Identities=20% Similarity=0.214 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAI--------NSSK----------ATYRSNKSAALIGLGRQIEALVECKEAI 320 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al 320 (713)
..++...|+.++..|+|.+|...|..|+.. .|.. ...+.+++.|+...|+|-++++.+..++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999753 4443 3477899999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 321 RIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 321 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
..+|.+..+|+..|.++...-+..+|...|.++++ ++|.-.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~-ldpsla 298 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE-LDPSLA 298 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh-cChhhH
Confidence 99999999999999999999999999999999999 998753
No 289
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.11 E-value=8.2e-06 Score=77.09 Aligned_cols=92 Identities=22% Similarity=0.362 Sum_probs=78.9
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHh----CC--CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKR----FP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~----~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
++...+.....+++-|++ |...+.+.|+|++.++. +| .+++..||+|....|+..|.|...||+.+|++|..
T Consensus 5 N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~ 84 (375)
T KOG0912|consen 5 NIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEM 84 (375)
T ss_pred cHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccch
Confidence 445556666677777999 99999999999997754 56 48999999999999999999999999999999998
Q ss_pred ee-eecCC-CHHHHHHHHHhhh
Q 005125 693 VK-EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 693 ~~-~~~g~-~~~~~~~~~~~~~ 712 (713)
.. +..|. +.+.|.++|++..
T Consensus 85 ~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 85 MKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhhccchhHHHHHHHHHHHh
Confidence 87 78888 9999999998753
No 290
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.11 E-value=2.1e-05 Score=77.47 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=65.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-----------cHhhHHHcCCCcccEEEEEEC-CeEee
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-----------HPYIAKSEGVSSIPAFKIYKN-GSRVK 694 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-----------~~~~~~~~~v~~~Pt~~~~~~-g~~~~ 694 (713)
....++.|++ |++|+.+.|.++++.++|+ +.++.|++|. ...++..+||..+|+++++.. |+.+.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 3456777888 9999999999999999985 6777777765 246888999999999999986 66665
Q ss_pred ee-cCC-CHHHHHHHHHhh
Q 005125 695 EI-PGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~-~g~-~~~~~~~~~~~~ 711 (713)
.+ .|. +.++|.+.|...
T Consensus 245 ~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 245 PIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 54 487 999999888654
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.10 E-value=0.0019 Score=67.55 Aligned_cols=298 Identities=13% Similarity=0.079 Sum_probs=171.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Q 005125 265 MGNEAYNKARFEDALALYDRAIAINS-SKATYRSNKSAALIGLGRQIEALVECKEAIRID--------PCYHRAHHRLAM 335 (713)
Q Consensus 265 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~ 335 (713)
.+.+..+.|+|+.-. ..+...+ +.....+..+......++++++..+.+++...- +......+..-.
T Consensus 4 ~~eaaWrl~~Wd~l~----~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLE----EYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHH----HHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356677888888832 3332222 233566666777778889998888888876541 111111111112
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH-HHHhhcHHHHHHHHHHHHH--cCCCChHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE-ARELKRWNDLLKETQNVIS--FGADSAPQVYALQAEA 412 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~la~~ 412 (713)
-+..+.+.+++......... . +.. .......|-.+... ......|+.-+..=.-++. ..+......+...+.+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~-~-~~~--~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQ-N-PQD--LKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcc-c-HHH--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 22233344444444422211 0 110 11111112222111 1112223332222222222 1244445788889999
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-----H-HHH-
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID-PNN-----K-EVI- 484 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~-----~-~~~- 484 (713)
..+.|.++.|...+.++....+.... ..+.+.+..+.++...|+..+|+..++..+... ... . ...
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~------~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~ 229 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSES------LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKS 229 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccC------CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhh
Confidence 99999999999999998876532211 145577888999999999999999999988721 111 0 000
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005125 485 --------------KGVKMAKAMASARLRGNLLFKA------SKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYE 544 (713)
Q Consensus 485 --------------~~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 544 (713)
..........++..+|...... +..++++..|.++++.+|....+|+.+|..+..+-+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~ 309 (352)
T PF02259_consen 230 GLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESD 309 (352)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhh
Confidence 1111122345566677777777 88999999999999999999999999998776543322
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCC
Q 005125 545 KAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPG 581 (713)
Q Consensus 545 ~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~ 581 (713)
.....-. ......-+...|+..|-+++...++
T Consensus 310 ~~~~~~~-----~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 310 PREKEES-----SQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccc-----chhHHHHHHHHHHHHHHHHHhhCCC
Confidence 2110000 0012333447889999999998887
No 292
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.09 E-value=0.00017 Score=74.57 Aligned_cols=101 Identities=20% Similarity=0.121 Sum_probs=81.7
Q ss_pred HHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 262 LKFMGNEAY-NKARFEDALALYDRAIAINSSKA--TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 262 ~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
+..++..|. .+|+.-+|+.++..++-..|... .++..+|.++.+.|...+|--.+..|+.-.|....-++.+|.++.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a 294 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA 294 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence 444554444 57899999999999988877543 477888999999999999988888888887777777889999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHH
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
.++++...+.+|..+.+ .+|....
T Consensus 295 ml~~~N~S~~~ydha~k-~~p~f~q 318 (886)
T KOG4507|consen 295 MLGEYNHSVLCYDHALQ-ARPGFEQ 318 (886)
T ss_pred HHhhhhhhhhhhhhhhc-cCcchhH
Confidence 99999999999998888 7776543
No 293
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.08 E-value=1.1e-05 Score=68.64 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=56.7
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcH-hhHHHcCCCc--ccEEEEEE-CCeEe
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHP-YIAKSEGVSS--IPAFKIYK-NGSRV 693 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~-~~~~~~~v~~--~Pt~~~~~-~g~~~ 693 (713)
.+........++++.|++ |++|+.+.|.+.+..... ....|+.|+++..+ .+...+++.+ +||++||. +|+.+
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCc
Confidence 334444556778888988 999999999999876543 33456667776554 3456788876 99999995 89998
Q ss_pred eeecC
Q 005125 694 KEIPG 698 (713)
Q Consensus 694 ~~~~g 698 (713)
.++.+
T Consensus 91 ~~~~~ 95 (117)
T cd02959 91 PEIIN 95 (117)
T ss_pred hhhcc
Confidence 85443
No 294
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=0.00043 Score=70.22 Aligned_cols=289 Identities=15% Similarity=0.114 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC----------C
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI-----DP----------C 325 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p----------~ 325 (713)
.+...+...+..+.|+..+++++..-.++..+...+++.+.+.+.......-....+....+ .| .
T Consensus 19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~ 98 (696)
T KOG2471|consen 19 SLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQ 98 (696)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhc
Confidence 45556666778899999999998888887777666677776554433222222333322222 11 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH---HHHHc---CC
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQ---NVISF---GA 399 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---~al~~---~p 399 (713)
....+++.|.+|+...++..|++........+.|-..... ....+.....+......++|+.++. +.+.. .+
T Consensus 99 ~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~a--a~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~ 176 (696)
T KOG2471|consen 99 GTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSA--ASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKL 176 (696)
T ss_pred chHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 2456788888988888888888876666552222211111 1111222223333344444443322 22111 11
Q ss_pred C---------------Ch-----------HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHH
Q 005125 400 D---------------SA-----------PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVR 453 (713)
Q Consensus 400 ~---------------~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l 453 (713)
. +. ..+.......|+.+.+...+..-.+.++.+.. ..+..+...
T Consensus 177 ~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~----------~s~~~l~LK 246 (696)
T KOG2471|consen 177 VGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ----------DSSMALLLK 246 (696)
T ss_pred cccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC----------CCcHHHHHH
Confidence 0 00 01222223344555555555555555544433 345678888
Q ss_pred HHHHHHcCCHHHHHHHHHHH-HHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-c------
Q 005125 454 AQVYIAAGRFEDAVKTAQDA-AQIDPN---NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE-H------ 522 (713)
Q Consensus 454 g~~~~~~g~~~~A~~~~~~a-l~~~p~---~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~------ 522 (713)
+..++..|++.+|.+.+... +...|. .+.... ...+.++|.++++.|.|.-++.+|.+|++ .
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~-------cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSS-------CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhh-------heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999887643 122222 111111 11234899999999999999999999995 1
Q ss_pred --CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 005125 523 --EA---------YNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAA 568 (713)
Q Consensus 523 --~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A 568 (713)
.| ...+.++|.|..|...|+.-.|.++|.++....-.++..|+.-|
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 11 23678999999999999999999999999999999999998443
No 295
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.8e-05 Score=74.91 Aligned_cols=102 Identities=25% Similarity=0.385 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAIN---SS-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.++-+..-|+.|++..+|..|+.+|.++|+.. |+ ++..|.++|.+...+|+|..|+..+.+++.++|.+..++++-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 44568899999999999999999999999874 33 356889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
|.|++.+.++.+|...++..+. ++.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~-~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ-IDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh-hhHH
Confidence 9999999999999999999887 5543
No 296
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.01 E-value=1.3e-05 Score=68.04 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=59.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHH---HHhC-CCcEEEEEeCCCc--------------------HhhHHHcCCCccc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQV---CKRF-PSVNFLKVEVEDH--------------------PYIAKSEGVSSIP 682 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l---~~~~-p~~~~~~v~~d~~--------------------~~~~~~~~v~~~P 682 (713)
....+++|+. |+.|+.+.+.+... .... ..+.++.++++.. ..++..+||.++|
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtP 84 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTP 84 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccC
Confidence 3456777777 99999999988853 3332 3577888887754 3588899999999
Q ss_pred EEEEEE-CCeEeeeecCC-CHHHHHHHH
Q 005125 683 AFKIYK-NGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 683 t~~~~~-~g~~~~~~~g~-~~~~~~~~~ 708 (713)
|++++. +|+.+..++|. ++++|.++|
T Consensus 85 t~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp EEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred EEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999985 79999999999 999998875
No 297
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.01 E-value=0.0015 Score=69.29 Aligned_cols=269 Identities=15% Similarity=0.084 Sum_probs=151.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005125 266 GNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEK 345 (713)
Q Consensus 266 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 345 (713)
|.-+...|+++.|+..|-++- .+..-..+.....+|.+|+..++..-.... ....|-.++..|...|+|+.
T Consensus 713 g~hl~~~~q~daainhfiea~--------~~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHH
Confidence 444445555555555554431 111222333444566666665554332221 23456678889999999999
Q ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHH
Q 005125 346 AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDS 425 (713)
Q Consensus 346 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 425 (713)
|.+.|.++-. .......|-+.|+|.+|.....+. ..|+.....|...+.-+...|+|.+|.++
T Consensus 784 ae~lf~e~~~---------------~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 784 AEELFTEADL---------------FKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHhcch---------------hHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 9999887643 112234456678888887776655 34555556677777777777777777666
Q ss_pred hhcc------ccCChh-----hHHhhh---cccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHH
Q 005125 426 YNKS------PKFCLE-----YYTKLF---GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP-----NNKEVIKG 486 (713)
Q Consensus 426 ~~~a------l~~~~~-----~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 486 (713)
|-.. +.+... +.-.+. ......+.+..+|.-|...|+...|...|-+|-.... ...+.|.-
T Consensus 847 yiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 847 YITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWED 926 (1636)
T ss_pred eEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHH
Confidence 5432 111000 000000 0112244667788999999999999999987754321 12233322
Q ss_pred HHHHHH----------HHHHH--H-----HHHHHHHcccHHHHHHHH------HHHhc-----cCCCCHHHHHHHHHHHH
Q 005125 487 VKMAKA----------MASAR--L-----RGNLLFKASKYKEACYAY------SEGLE-----HEAYNSVLLCNRAACRS 538 (713)
Q Consensus 487 ~~~~~~----------~~~~~--~-----lg~~~~~~g~~~~A~~~~------~~al~-----~~p~~~~~~~~la~~~~ 538 (713)
-.++.+ +..++ . .-.++-+.|-+++|+..- +-+.+ .....+.++..++..+.
T Consensus 927 ayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~le 1006 (1636)
T KOG3616|consen 927 AYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLE 1006 (1636)
T ss_pred HHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhh
Confidence 111110 00000 0 112233445555555432 11211 12345788999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 005125 539 KLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 539 ~~g~~~~A~~~~~~al~~~p~~ 560 (713)
..|++++|-+.|-.+++++.-+
T Consensus 1007 degk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 1007 DEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred hccchhhhhHhhHHHhhccccc
Confidence 9999999999999999987543
No 298
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.00 E-value=1.3e-05 Score=81.40 Aligned_cols=102 Identities=23% Similarity=0.339 Sum_probs=95.5
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----------
Q 005125 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----------- 565 (713)
Q Consensus 497 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----------- 565 (713)
.+.+..++..++|+.|+..|.+||+++|+.+..+.+++.++.+.+++..|+..+.+|++++|....+++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 367888999999999999999999999999999999999999999999999999999999999888776
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005125 566 -EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKK 598 (713)
Q Consensus 566 -~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 598 (713)
.+|+..|++...+.|+++.+...+.++...+.+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999877665
No 299
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.99 E-value=1.4e-05 Score=54.49 Aligned_cols=40 Identities=28% Similarity=0.171 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 295 YRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444444
No 300
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.6e-05 Score=72.97 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH
Q 005125 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL 529 (713)
Q Consensus 450 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 529 (713)
+..-|..++.-.+|+.|+.+|.++|.++|..+..+. +.+.++++..+|+.+....++|+++.|+....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~t------------nralchlk~~~~~~v~~dcrralql~~N~vk~ 80 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYT------------NRALCHLKLKHWEPVEEDCRRALQLDPNLVKA 80 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhh------------hHHHHHHHhhhhhhhhhhHHHHHhcChHHHHH
Confidence 344577788888999999999999999999987776 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 530 LCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 530 ~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
++.+|.++.....+++|+..+.+|..+
T Consensus 81 h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 81 HYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999999999765
No 301
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.98 E-value=1.8e-05 Score=53.84 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSA 301 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 301 (713)
|++++.+|..|...|++++|+..|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4688999999999999999999999999999999999998875
No 302
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.95 E-value=0.00054 Score=72.58 Aligned_cols=212 Identities=17% Similarity=0.168 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHh----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 295 YRSNKSAALIGLGRQIEALVECKE------AIRI----DPCY-HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~------al~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
.|-.-|.+|.+..++++|+++|++ ++++ .|.. ...-...|..+...|+++.|+.+|-.+-.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-------- 734 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-------- 734 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------
Confidence 444556677777788888888764 4443 2222 22233457778888999999998876644
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcc
Q 005125 364 KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL 443 (713)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 443 (713)
.............|.+|+..++..-...... ..|-.++..|...|+|+-|.++|.++-....
T Consensus 735 -------~~kaieaai~akew~kai~ildniqdqk~~s--~yy~~iadhyan~~dfe~ae~lf~e~~~~~d--------- 796 (1636)
T KOG3616|consen 735 -------LIKAIEAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYANKGDFEIAEELFTEADLFKD--------- 796 (1636)
T ss_pred -------HHHHHHHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhccchhHHHHHHHHHhcchhHH---------
Confidence 2223344556778999988887665544332 5677789999999999999999987643221
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccH-------------H
Q 005125 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKY-------------K 510 (713)
Q Consensus 444 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-------------~ 510 (713)
--..|-+.|++++|.++-+++. .|......+. ..+.-+-..|+| +
T Consensus 797 ---------ai~my~k~~kw~da~kla~e~~--~~e~t~~~yi-----------akaedldehgkf~eaeqlyiti~~p~ 854 (1636)
T KOG3616|consen 797 ---------AIDMYGKAGKWEDAFKLAEECH--GPEATISLYI-----------AKAEDLDEHGKFAEAEQLYITIGEPD 854 (1636)
T ss_pred ---------HHHHHhccccHHHHHHHHHHhc--CchhHHHHHH-----------HhHHhHHhhcchhhhhheeEEccCch
Confidence 2456778888888887776653 3443333321 233333444444 4
Q ss_pred HHHHHHHHHh----------ccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 511 EACYAYSEGL----------EHEAYN-SVLLCNRAACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 511 ~A~~~~~~al----------~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 554 (713)
.|+..|.+.- +.+|+. .+.+..+|.-|...|+..+|...|-+|-
T Consensus 855 ~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 855 KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 4455554321 123332 4667788888889999888888776553
No 303
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.94 E-value=0.0087 Score=67.18 Aligned_cols=291 Identities=11% Similarity=0.008 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----H
Q 005125 259 PEELKFMGNEAY-NKARFEDALALYDRAIAINSS--KA----TYRSNKSAALIGLGRQIEALVECKEAIRIDPCY----H 327 (713)
Q Consensus 259 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~ 327 (713)
+.+.+.+|.+++ ...++++|..++++++.+... .. .+.+.++.++.+.+... |+..++++++..... .
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 346889999888 678999999999999887633 22 34566788888888777 999999999875541 2
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHc------CC
Q 005125 328 RAHHRL--AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF------GA 399 (713)
Q Consensus 328 ~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p 399 (713)
...+.+ ...+...+++..|++.++.... ......+....+...+..+......+..+++++..+++... ++
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~-~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQ-LANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 222222 2233334799999999999888 54322222233444555566666677777777777766432 11
Q ss_pred C-ChH--HHHHHHH--HHHHHccCHHHHHHHhhcc---cc---CCh-------hh------------------HHhhhcc
Q 005125 400 D-SAP--QVYALQA--EALLRLQRHQEAHDSYNKS---PK---FCL-------EY------------------YTKLFGL 443 (713)
Q Consensus 400 ~-~~~--~~~~~la--~~~~~~g~~~~A~~~~~~a---l~---~~~-------~~------------------~~~~~~~ 443 (713)
. ..+ .+|..+- .++...|+++.+...+++. +. ..+ +. .-.|.+.
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 1 112 2333332 3455667776766665543 11 111 00 0000000
Q ss_pred c-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHH--HHHHHHHHHHHHHHHHccc
Q 005125 444 A-GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK------------EVIKGVKM--AKAMASARLRGNLLFKASK 508 (713)
Q Consensus 444 ~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~~~~--~~~~~~~~~lg~~~~~~g~ 508 (713)
. -.+-++..-|......+..++|.++++++++.-.+.. .+.....+ .........++...+-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 0 0123344456677777888899999998886421111 01111111 1223445568888889999
Q ss_pred HHHHHHHHHHHhccC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 509 YKEACYAYSEGLEHE---A------YNSVLLCNRAACRSKLGQYEKAVEDCT 551 (713)
Q Consensus 509 ~~~A~~~~~~al~~~---p------~~~~~~~~la~~~~~~g~~~~A~~~~~ 551 (713)
+..|....+.+.... | -.+..++..|..+...|+.+.|...|.
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 999999988777542 2 237789999999999999999999998
No 304
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.94 E-value=8.2e-05 Score=66.18 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=61.6
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc------------Hhh-HHHc---CCCcccEEEEEE-C
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH------------PYI-AKSE---GVSSIPAFKIYK-N 689 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~------------~~~-~~~~---~v~~~Pt~~~~~-~ 689 (713)
....++.||+ |++|+...|.++++.+++. +.++.|+.|.. +.. ...+ +|.++||..++. +
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 4456888999 9999999999999999884 56666665542 222 2344 789999988885 4
Q ss_pred Ce-EeeeecCC-CHHHHHHHHHhh
Q 005125 690 GS-RVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 690 g~-~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|. .+....|. +.++|++.|++.
T Consensus 129 G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 129 TRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCEEEEEeecccCHHHHHHHHHHh
Confidence 55 46678898 999999988764
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.92 E-value=8.9e-06 Score=51.52 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=31.8
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 515 AYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE 548 (713)
Q Consensus 515 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 548 (713)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999963
No 306
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.91 E-value=0.00041 Score=71.18 Aligned_cols=170 Identities=18% Similarity=0.123 Sum_probs=113.7
Q ss_pred hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh-------------hc--ccC
Q 005125 381 LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL-------------FG--LAG 445 (713)
Q Consensus 381 ~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------~~--~~~ 445 (713)
..+.+.-++...+||+++|+.. .+|..++.- ...-..+|+++|+++++......... .. ...
T Consensus 181 ERnp~aRIkaA~eALei~pdCA-dAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCA-DAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhh-HHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 4556677888899999999885 566655431 22345677777777665433221110 00 011
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN--KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH- 522 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 522 (713)
-..+...+|.+..++|+.++|++.++..++..|.. ..++. ++..++..++.|.++...+.+.-++
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Ire------------nLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRE------------NLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHH------------HHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 25566788999999999999999999999887753 22333 7999999999999999999886443
Q ss_pred CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCChHHHH
Q 005125 523 EAYNSVLLCNRAACRSK-LGQ---------------YEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 523 ~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
-|..+...+..|.+..+ .++ -..|++.+.+|++.+|.-+..++
T Consensus 326 lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 326 LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 35556666655554432 222 13466778888888888777766
No 307
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.90 E-value=0.044 Score=57.04 Aligned_cols=110 Identities=10% Similarity=0.032 Sum_probs=58.5
Q ss_pred CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCHHHHHHH----H
Q 005125 245 GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRS-NKSAALIGLGRQIEALVE----C 316 (713)
Q Consensus 245 ~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~la~~~~~~g~~~~A~~~----~ 316 (713)
++....+++ .-|..+.+|.......+...+|+.-..+|.+.|..--+ .+.|. .+..+-...++...+... |
T Consensus 36 ~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YVR~~~~~~~~~r~~m~qAy 114 (656)
T KOG1914|consen 36 DKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYVRETKGKLFGYREKMVQAY 114 (656)
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 566666666 55667777777777777777777777777776653221 23332 222333333333332222 2
Q ss_pred HHHHH---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHhh
Q 005125 317 KEAIR---IDPCYHRAHHRLAMLYF---------RLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 317 ~~al~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~ 355 (713)
+-++. .++.....|...+..+. .+.+.+.-.+.|++|+.
T Consensus 115 ~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 115 DFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 22222 35555555655554433 22345556667888876
No 308
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.88 E-value=5.2e-05 Score=82.74 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=74.7
Q ss_pred hhHHHHHhh-cCCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 619 NERFRHFVT-SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 619 ~~~~~~~l~-~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
...|...+. ....+++.|++ |++|+.+.|.+++++..+. .+.|+.+|++...... ++|.++||+.+|..|.
T Consensus 353 ~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~--~~i~~~Pt~~~~~~~~ 430 (462)
T TIGR01130 353 GKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP--FEVEGFPTIKFVPAGK 430 (462)
T ss_pred CcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC--CCccccCEEEEEeCCC
Confidence 457777654 45567777888 9999999999999998874 4889999998765443 8999999999999887
Q ss_pred Ee--eeecCC-CHHHHHHHHHhhh
Q 005125 692 RV--KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~--~~~~g~-~~~~~~~~~~~~~ 712 (713)
.+ ..+.|. +.+.|.+||++.+
T Consensus 431 ~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 431 KSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred CcCceEecCcCCHHHHHHHHHhcC
Confidence 63 567777 9999999998864
No 309
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.84 E-value=1.9e-05 Score=50.05 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=16.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 316 CKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAV 347 (713)
Q Consensus 316 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 347 (713)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 310
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.83 E-value=8.9e-05 Score=78.94 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=67.3
Q ss_pred cCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEE----------------------------eCCCcHhhHHH
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKV----------------------------EVEDHPYIAKS 675 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v----------------------------~~d~~~~~~~~ 675 (713)
..+.+++.||+ |++|+...|.++++.+++. ++.++.| ..|....++..
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 34567777999 9999999999999998874 5555544 33445678889
Q ss_pred cCCCcccEEE-EEECCeEeeeecCC-CHHHHHHHHHh
Q 005125 676 EGVSSIPAFK-IYKNGSRVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 676 ~~v~~~Pt~~-~~~~g~~~~~~~g~-~~~~~~~~~~~ 710 (713)
++|.++|+++ |.++|+.+..+.|. +.++|.++|+.
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 9999999885 45789999999999 99999999983
No 311
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0028 Score=61.54 Aligned_cols=156 Identities=15% Similarity=0.038 Sum_probs=105.2
Q ss_pred HHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccC-ChhhHHhhhcccCcHHHHHHHHHHH
Q 005125 379 RELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF-CLEYYTKLFGLAGGAYLLIVRAQVY 457 (713)
Q Consensus 379 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~lg~~~ 457 (713)
...|++.+|....++.++-.|.+. .++..--.+++.+|+.+.-...+++.+.. +++. +-..++.-.++..+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDl-la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dl-------p~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDL-LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADL-------PCYSYVHGMYAFGL 185 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhh-hhhhhhhhHHHhccchhhhhhHHHHhccccCCCC-------cHHHHHHHHHHhhH
Confidence 344555566666666666666654 33334456677777777777777777654 3321 12345566677788
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC----HHHHHHH
Q 005125 458 IAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN----SVLLCNR 533 (713)
Q Consensus 458 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 533 (713)
...|-|++|.+..++++++++.+..+.. .++.++...|++.++.++..+.-..-... ..-|..-
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~H------------a~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~ 253 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASH------------AKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT 253 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHH------------HHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH
Confidence 8888888888888888888888876665 57888888888888888877654332211 2235567
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 005125 534 AACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 534 a~~~~~~g~~~~A~~~~~~al 554 (713)
|.++..-+.|+.|++.|.+-+
T Consensus 254 Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 254 ALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhhhcccchhHHHHHHHHHH
Confidence 778888888888888887543
No 312
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.81 E-value=0.0034 Score=69.19 Aligned_cols=276 Identities=13% Similarity=-0.000 Sum_probs=180.8
Q ss_pred hhhhHhh-cCCCCHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CHH
Q 005125 247 FPQCISS-LNKLDPEELKFMGNEAYNK-----ARFEDALALYDRAIAI-----NSSKATYRSNKSAALIGLG-----RQI 310 (713)
Q Consensus 247 a~~~~~~-~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~ 310 (713)
+..+++. ....+..+...+|.+|+.- .|.+.|+.+|+.+.+. .-..+.+.+.+|.+|.... ++.
T Consensus 231 a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~ 310 (552)
T KOG1550|consen 231 AFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYE 310 (552)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHH
Confidence 5555655 6777888888999888764 6899999999999771 1125567888999998843 778
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH----Hhhc
Q 005125 311 EALVECKEAIRIDPCYHRAHHRLAMLYFRLG---EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR----ELKR 383 (713)
Q Consensus 311 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~----~~~~ 383 (713)
.|+.+|.++.... ++.+.+.+|.+|..-. ++..|.++|..|.. ..-. .+.+.++..+. -..+
T Consensus 311 ~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~G~~--------~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 311 KALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-AGHI--------LAIYRLALCYELGLGVERN 379 (552)
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-cCCh--------HHHHHHHHHHHhCCCcCCC
Confidence 8999999998765 4678889999988765 57899999999876 3222 33444444443 2457
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc-cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH---
Q 005125 384 WNDLLKETQNVISFGADSAPQVYALQAEALLRL-QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA--- 459 (713)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--- 459 (713)
...|..++.++...++. .+...++..+... ++++.+...+.......-+.... ++..+.........
T Consensus 380 ~~~A~~~~k~aA~~g~~---~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~------~a~~l~~~~~~~~~~~~ 450 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGNP---SAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQS------NAAYLLDQSEEDLFSRG 450 (552)
T ss_pred HHHHHHHHHHHHHccCh---hhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhh------HHHHHHHhccccccccc
Confidence 88899999999888832 3334444444332 77777766665544332221110 11111111111111
Q ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005125 460 -AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA----SKYKEACYAYSEGLEHEAYNSVLLCNRA 534 (713)
Q Consensus 460 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la 534 (713)
..+...+...+.++... .+..+.. .+|.+|+.- .+++.|...|..+.... +...+++|
T Consensus 451 ~~~~~~~~~~~~~~a~~~--g~~~a~~------------~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg 513 (552)
T KOG1550|consen 451 VISTLERAFSLYSRAAAQ--GNADAIL------------KLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLG 513 (552)
T ss_pred cccchhHHHHHHHHHHhc--cCHHHHh------------hhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhh
Confidence 12445566666665443 3333333 577777654 46999999999998877 88999999
Q ss_pred HHHHHc---CCHHHHHHHHHHHHHhCCC
Q 005125 535 ACRSKL---GQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 535 ~~~~~~---g~~~~A~~~~~~al~~~p~ 559 (713)
.++..- .++..|..+|.++.+.+..
T Consensus 514 ~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 514 YMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred hHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 988531 1268888888888776654
No 313
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.81 E-value=0.00015 Score=61.91 Aligned_cols=79 Identities=13% Similarity=-0.003 Sum_probs=58.4
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHH-HH--HHHHh-CCCcEEEEEeCCCcHhhHHH--------cCCCcccEEEE
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQL-ME--QVCKR-FPSVNFLKVEVEDHPYIAKS--------EGVSSIPAFKI 686 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~-~~--~l~~~-~p~~~~~~v~~d~~~~~~~~--------~~v~~~Pt~~~ 686 (713)
.+........++++.|++ |++|+.+.+. |. ++.+. ....+++++|+++.+.++.. +++.++|+++|
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf 86 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF 86 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 455566667778888888 9999999762 32 34443 25689999999998887653 58999999999
Q ss_pred EE-CCeEeeeecCC
Q 005125 687 YK-NGSRVKEIPGH 699 (713)
Q Consensus 687 ~~-~g~~~~~~~g~ 699 (713)
+. +|+.+.+..+.
T Consensus 87 l~~~G~~~~~~~~~ 100 (124)
T cd02955 87 LTPDLKPFFGGTYF 100 (124)
T ss_pred ECCCCCEEeeeeec
Confidence 95 68888655444
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.80 E-value=4.3e-05 Score=48.71 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4578888888888888888888888888888864
No 315
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00058 Score=66.15 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
+.-+-.-|.-|++.++|..|+.+|.+.|+..-.+++... ..|.|.+.+.+..|+|..|+..+.+++.++|.+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlna--------vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNA--------VLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 445556699999999999999999999998766665543 234589999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
..+++.=|.|++.+.++++|..+++..+.++-+
T Consensus 153 ~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 153 LKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999999999998877644
No 316
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.79 E-value=0.00012 Score=56.60 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=52.0
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHh----hHHHcCCCcccEEEEEECCeEeeeecCCCHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY----IAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 706 (713)
+.+|+. |+.|+.+.+.++. .++.+..+|++..+. +...+++.++|++.+. |+. +.|.+++.|.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 455666 9999999988865 257888899987654 4456899999998864 543 88889999998
Q ss_pred HHH
Q 005125 707 SVK 709 (713)
Q Consensus 707 ~~~ 709 (713)
+|+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 874
No 317
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.77 E-value=4.4e-05 Score=71.86 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=70.1
Q ss_pred hcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCCC
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ 700 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 700 (713)
...+.+++.|++ |++|+.+.|++.++--+. -.+.+.+.|+...|.++..+||.+.||+.+|++|-.++--.|..
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~ 120 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGRE 120 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCcc
Confidence 456788999999 999999999999876433 23899999999999999999999999999999887776555558
Q ss_pred HHHHHHHHHh
Q 005125 701 CELLEKSVKL 710 (713)
Q Consensus 701 ~~~~~~~~~~ 710 (713)
.+.|.++-..
T Consensus 121 Kd~iieFAhR 130 (468)
T KOG4277|consen 121 KDAIIEFAHR 130 (468)
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 318
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.77 E-value=1.9e-05 Score=76.53 Aligned_cols=98 Identities=22% Similarity=0.312 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 341 (713)
....+...+..|.+++|++.|..+|.++|..+..+..++.+++.++++..|+..|..++.++|+...-|-..|.+...+|
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 34456667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhccc
Q 005125 342 EAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~~p~ 360 (713)
++++|..++..+.+ ++-+
T Consensus 197 ~~e~aa~dl~~a~k-ld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACK-LDYD 214 (377)
T ss_pred chHHHHHHHHHHHh-cccc
Confidence 99999999999998 5544
No 319
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=3.2e-05 Score=69.44 Aligned_cols=80 Identities=14% Similarity=0.272 Sum_probs=67.2
Q ss_pred hHHHHHhhc--CCceEEEeecC--chhHHHHHHHHHHHHhC--CCcEEEEEeCCCcHhhHHHcCCCc------ccEEEEE
Q 005125 620 ERFRHFVTS--PGMAVVLFCSK--AEHKQVLQLMEQVCKRF--PSVNFLKVEVEDHPYIAKSEGVSS------IPAFKIY 687 (713)
Q Consensus 620 ~~~~~~l~~--~~~~vv~f~~c--g~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~~~~~~~~~v~~------~Pt~~~~ 687 (713)
+.+...+.. ...+++.|++| +.|..+.|+|.+++.+| +...|.+||+...|+.+.+|+|.. +||+++|
T Consensus 133 q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilF 212 (265)
T KOG0914|consen 133 QLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILF 212 (265)
T ss_pred hhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEE
Confidence 344444433 34577778885 89999999999999998 679999999999999999998764 8999999
Q ss_pred ECCeEeeeecCC
Q 005125 688 KNGSRVKEIPGH 699 (713)
Q Consensus 688 ~~g~~~~~~~g~ 699 (713)
.+|+++.+.|-.
T Consensus 213 q~gkE~~RrP~v 224 (265)
T KOG0914|consen 213 QKGKEVSRRPDV 224 (265)
T ss_pred ccchhhhcCccc
Confidence 999999988866
No 320
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.73 E-value=0.015 Score=64.15 Aligned_cols=254 Identities=13% Similarity=0.036 Sum_probs=166.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSS---------KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY 326 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 326 (713)
-.+|......+.......++.+|..+..++...-+. .+......|.+....|++++|++..+.++..-|.+
T Consensus 412 ~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 412 ASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred hhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 356677778888889999999999999998765433 13455567888889999999999999999987765
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc--HHHHHHHHHHH----H
Q 005125 327 -----HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR--WNDLLKETQNV----I 395 (713)
Q Consensus 327 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a----l 395 (713)
..++..+|.+..-.|++++|+.+..++.+ ....+......+...+..+.+....|+ +.+....+... +
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l 570 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHL 570 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999999999999888 654444444555666777788888883 33333333222 2
Q ss_pred HcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 396 SFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 396 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
...|-+. ......+.++..--+++.+..-....++........-. ..-.+++.++.+++..|++++|...+.+...
T Consensus 571 ~q~~~~~-f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~---~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 571 EQKPRHE-FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPL---LSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred hhcccch-hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2223322 12222233333333377777766666554332211000 0112336899999999999999999998876
Q ss_pred hCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Q 005125 476 IDPNN-KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL 520 (713)
Q Consensus 476 ~~p~~-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 520 (713)
+-.+. +..+.. ..+..-.......+|+.++|.....+..
T Consensus 647 l~~~~~~~~~~~------a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 647 LLLNGQYHVDYL------AAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HhcCCCCCchHH------HHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 54333 222211 1112234445567899999988887743
No 321
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.68 E-value=0.00017 Score=62.73 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=58.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC-----------------------CCcHhhHHHcCCCccc-
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV-----------------------EDHPYIAKSEGVSSIP- 682 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~-----------------------d~~~~~~~~~~v~~~P- 682 (713)
...+++.|++ |+.|+...|.++++.+.++ +.++.|+. |....++..++|..+|
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~ 103 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPE 103 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCe
Confidence 3457777888 9999999999999988863 66666653 3445677789999999
Q ss_pred EEEEEECCeEeeeecCC-CHHHH
Q 005125 683 AFKIYKNGSRVKEIPGH-QCELL 704 (713)
Q Consensus 683 t~~~~~~g~~~~~~~g~-~~~~~ 704 (713)
++++.++|+.+....|. +.+.|
T Consensus 104 ~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 104 TFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred EEEECCCceEEEEEeccCChHhc
Confidence 55555789999999998 66544
No 322
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0019 Score=62.58 Aligned_cols=166 Identities=17% Similarity=0.044 Sum_probs=96.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 005125 299 KSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEA 378 (713)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~ 378 (713)
-+.+.+..|++.+|...+++.++-.|.+.-++..--.+++.+|+.+.-...+++++..-+++-+ -.....-..+..+
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp---~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP---CYSYVHGMYAFGL 185 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCc---HHHHHHHHHHhhH
Confidence 3444455566666666666666666666555555555666666666666666665551133321 0111222233344
Q ss_pred HHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHH
Q 005125 379 RELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYI 458 (713)
Q Consensus 379 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 458 (713)
.+.|-|++|.+..++++++++.+. .+...++.++...+++.++.+...+.-..-.. .+. ....-|-.-+.++.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~-Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~---s~m---lasHNyWH~Al~~i 258 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDC-WASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ---SWM---LASHNYWHTALFHI 258 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcch-HHHHHHHHHHHhcchhhhHHHHHHhcccchhh---hhH---HHhhhhHHHHHhhh
Confidence 556666666666666666666654 45555678888888888888887765332211 110 11223445677788
Q ss_pred HcCCHHHHHHHHHHHH
Q 005125 459 AAGRFEDAVKTAQDAA 474 (713)
Q Consensus 459 ~~g~~~~A~~~~~~al 474 (713)
.-+.|+.|++.|.+-+
T Consensus 259 E~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 259 EGAEYEKALEIYDREI 274 (491)
T ss_pred cccchhHHHHHHHHHH
Confidence 8888999998887654
No 323
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.67 E-value=0.00011 Score=46.68 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567788888888888888888888888888764
No 324
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=8.4e-05 Score=77.42 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=70.6
Q ss_pred hHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE-
Q 005125 620 ERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR- 692 (713)
Q Consensus 620 ~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~- 692 (713)
.+|...+.+ ...+++.|++ ||+|+++.|++++|++.+ ++++++++|...+..-. +.|+..||+.+|+.|..
T Consensus 374 knfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~--~~~~~fPTI~~~pag~k~ 451 (493)
T KOG0190|consen 374 KNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPS--LKVDGFPTILFFPAGHKS 451 (493)
T ss_pred cCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCcc--ccccccceEEEecCCCCC
Confidence 467776655 5567777999 999999999999999887 67999999998764332 25677999999998763
Q ss_pred -eeeecCC-CHHHHHHHHHhhh
Q 005125 693 -VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 693 -~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+-...|. +.+.+..+|++..
T Consensus 452 ~pv~y~g~R~le~~~~fi~~~a 473 (493)
T KOG0190|consen 452 NPVIYNGDRTLEDLKKFIKKSA 473 (493)
T ss_pred CCcccCCCcchHHHHhhhccCC
Confidence 3344566 8899999987654
No 325
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.65 E-value=0.00034 Score=65.19 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=62.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHh-----------------------hHHHcCCCcccE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY-----------------------IAKSEGVSSIPA 683 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~-----------------------~~~~~~v~~~Pt 683 (713)
...+++.||+ |++|+...|.+.++.+. ++.++.|+.++.+. +...++|..+|+
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~ 145 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE 145 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCe
Confidence 4567777999 99999999999998764 57778887654321 334678999995
Q ss_pred -EEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 684 -FKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 684 -~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|++-++|+.+....|. +.+.++++|+..
T Consensus 146 t~vid~~G~i~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 146 TFLIDGNGIIRYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred EEEECCCceEEEEEecCCCHHHHHHHHHHH
Confidence 5555689999999998 888888888754
No 326
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.64 E-value=0.0033 Score=67.61 Aligned_cols=168 Identities=13% Similarity=-0.036 Sum_probs=121.2
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhcccc-HHHHHHHHHHHHHHHHHH----HhhcHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKD-IAKAEALHKHLTKCNEAR----ELKRWNDLLKETQNVISFGADSAPQVYALQA 410 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la 410 (713)
+.--.|+-+.+++.+.++.+ ...-. +.....+..++....... .....+.|.+.++...+..|+.. -+++..|
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~-lfl~~~g 274 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA-LFLFFEG 274 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH-HHHHHHH
Confidence 33345899999999998876 22222 212222222222222222 24567789999999999999985 6777789
Q ss_pred HHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 411 EALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
.++...|+.++|++.|++++....+... ...-.++.+|.++..+.+|++|..+|.+..+.+.-....+.+
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Q------l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y---- 344 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQ------LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY---- 344 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHh------HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH----
Confidence 9999999999999999999865544433 235578899999999999999999999999876665555443
Q ss_pred HHHHHHHHHHHHHHHcccH-------HHHHHHHHHHhcc
Q 005125 491 KAMASARLRGNLLFKASKY-------KEACYAYSEGLEH 522 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~ 522 (713)
..|.++...++. ++|.+.|.++-.+
T Consensus 345 -------~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 345 -------LAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred -------HHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 688899999988 7777777766543
No 327
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.63 E-value=0.0001 Score=46.90 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 480 (713)
+.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3579999999999999999999999999999974
No 328
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.63 E-value=0.016 Score=60.57 Aligned_cols=232 Identities=15% Similarity=0.098 Sum_probs=136.4
Q ss_pred hHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 250 CISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAIN--------SSKATYRSNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 250 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
+........++..+..+......++++++..+.+++...- +......+..-.-+..+.+.++++.+......
T Consensus 20 ~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~ 99 (352)
T PF02259_consen 20 YLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQ 99 (352)
T ss_pred HHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3333444555778888888889999999999998887642 11111112222222233344444444322111
Q ss_pred hCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHhhhhccccHH----HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005125 322 IDPCYHRAHHRLAMLY-FRLGEAEKAVSHYKKSSSLANQKDIA----KAEALHKHLTKCNEARELKRWNDLLKETQNVIS 396 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 396 (713)
. ......+-... .+......-....+..+. ....-.. .......++..+...+..|.++.|...+.++..
T Consensus 100 ~----~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~-~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 100 N----PQDLKSLLKRWRSRLPNMQDDFSVWEPILS-LRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred c----HHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 0 11111110000 011111111122222222 1100000 123346678889999999999999999999988
Q ss_pred cCCCC---hHHHHHHHHHHHHHccCHHHHHHHhhccccC-Chhh--------HH---------------hhhcccCcHHH
Q 005125 397 FGADS---APQVYALQAEALLRLQRHQEAHDSYNKSPKF-CLEY--------YT---------------KLFGLAGGAYL 449 (713)
Q Consensus 397 ~~p~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~--------~~---------------~~~~~~~~~~~ 449 (713)
..+.. .+.+....+.++...|+..+|+..++..+.. .... .. ........+.+
T Consensus 175 ~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 254 (352)
T PF02259_consen 175 LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKA 254 (352)
T ss_pred cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHH
Confidence 76322 3577788899999999999999999887761 1111 00 00111223667
Q ss_pred HHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 450 LIVRAQVYIAA------GRFEDAVKTAQDAAQIDPNNKEVIKG 486 (713)
Q Consensus 450 ~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~ 486 (713)
+..+|...... +..++++..|.+++.++|....+|..
T Consensus 255 ~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 255 FLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 88888888888 88999999999999999999888873
No 329
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.003 Score=63.18 Aligned_cols=137 Identities=8% Similarity=-0.056 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIG-LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
+|..+.....+.+..+.|...|.+|++..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 577778888888889999999999997666678899999999777 4566669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
.|+.+.|...|++++. .-+.... .-..|..........|+++......+++.+..|+.
T Consensus 83 ~~d~~~aR~lfer~i~-~l~~~~~---~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LNDINNARALFERAIS-SLPKEKQ---SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT-HHHHHHHHHHHCC-TSSCHHH---CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCcHHHHHHHHHHHHH-hcCchhH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999 5444421 11223333344455678888888888888777764
No 330
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.62 E-value=0.00015 Score=46.17 Aligned_cols=32 Identities=19% Similarity=0.621 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSS 291 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 291 (713)
++++.+|.+++..|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 331
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0022 Score=64.14 Aligned_cols=135 Identities=13% Similarity=0.051 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA-AGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
+|..+.....+.+..+.|..+|.+|.+..+ ....+|...|.+.+. .++.+.|...|+.+++..|.+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~----------~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~ 72 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR----------CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 566666777777788999999999975433 234577778888666 566666999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS---VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
|. .....+...++.+.|...|++++..-|... .+|......-.+.|+.+......+++.+..|++
T Consensus 73 ~~------------~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 73 WL------------EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HH------------HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HH------------HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 87 356777888999999999999998876554 577778888888899999998888888888774
Q ss_pred h
Q 005125 561 S 561 (713)
Q Consensus 561 ~ 561 (713)
.
T Consensus 141 ~ 141 (280)
T PF05843_consen 141 N 141 (280)
T ss_dssp -
T ss_pred h
Confidence 3
No 332
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.60 E-value=0.00012 Score=63.07 Aligned_cols=81 Identities=11% Similarity=0.265 Sum_probs=49.9
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHH---cCCCcccEEEEEE-CCeEeeeecCCCHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKS---EGVSSIPAFKIYK-NGSRVKEIPGHQCEL 703 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~---~~v~~~Pt~~~~~-~g~~~~~~~g~~~~~ 703 (713)
...+++|.+ ||+|.+..|+|.++++..|.+.+-.+..|+++++... .|..++|+|+++. +|++++++.. -|+.
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge-rP~~ 120 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE-RPKE 120 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEES-S-HH
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC-CCHH
Confidence 346666766 9999999999999999989888888888888776554 4688999999996 4677776544 4666
Q ss_pred HHHHHHhh
Q 005125 704 LEKSVKLY 711 (713)
Q Consensus 704 ~~~~~~~~ 711 (713)
+.++++++
T Consensus 121 ~~~~~~~~ 128 (129)
T PF14595_consen 121 VQELVDEY 128 (129)
T ss_dssp HH------
T ss_pred HhhccccC
Confidence 77776654
No 333
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.59 E-value=0.00039 Score=64.07 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=63.4
Q ss_pred cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-----------------------cHhhHHHcCCCccc
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-----------------------HPYIAKSEGVSSIP 682 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-----------------------~~~~~~~~~v~~~P 682 (713)
..+.+++.|++ |++|+...|.++++.+. ++.++.|+.++ ...++..++|.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 34567777888 99999999999998765 36666666432 23456678899999
Q ss_pred E-EEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 683 A-FKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 683 t-~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+ |++.++|+.+....|. +.+++.++|+++
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 5 5555789999999998 999999999876
No 334
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.0065 Score=67.19 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAI 320 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 320 (713)
++.|..+|.+-.+.|...+|++.|-+| +++..|.....+..+.|.|++-+.++.-|-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344555555555555555555555443 334444444455555555555555554443
No 335
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.57 E-value=0.0019 Score=57.73 Aligned_cols=94 Identities=22% Similarity=0.222 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSK----------------------ATYRSNKSAALIGLGRQIEALVECKEA 319 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~a 319 (713)
+...|......++.+.++..+.+++.+.... ..++..++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4455667778899999999999999874321 135567788888999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+..+|.+..+|..+-.+|...|+..+|+..|++...
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998866
No 336
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.018 Score=58.82 Aligned_cols=232 Identities=16% Similarity=0.087 Sum_probs=150.7
Q ss_pred HhcCHHHHHHHHHHHHHhC------CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------C
Q 005125 271 NKARFEDALALYDRAIAIN------SSK--------ATYRSNKSAALIGLGRQIEALVECKEAIRI---DPC-------Y 326 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~~------p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~ 326 (713)
..|-|++|.++-+++|..- +.. ...+-.+..|-.-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 4567778888777777542 111 234556777888899999999988877765 343 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY 406 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 406 (713)
+..++.+|......+.++.|...|..|.+ +..... +. ..+.
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k-~t~~~d-----l~---------------------------------a~~n 407 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATK-LTESID-----LQ---------------------------------AFCN 407 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHH-hhhHHH-----HH---------------------------------HHHH
Confidence 56788889888899999999999999988 322210 00 1344
Q ss_pred HHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 407 ALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG 486 (713)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 486 (713)
.++|..|++.++-+.-.+.++..- |.+.....+....+.+++..|...+.++++.||...+.+.+++. +.+-.+.
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~---p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~r 482 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIG---PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNR 482 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcC---CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHH
Confidence 567888888777665555555432 22111111111245688889999999999999999999999987 2222221
Q ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC---CCCHHHHH---HHHHHHHHcCC--HHHHHHHH
Q 005125 487 VKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE---AYNSVLLC---NRAACRSKLGQ--YEKAVEDC 550 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~---~la~~~~~~g~--~~~A~~~~ 550 (713)
+ ....+.-+|.+....|+..++.+..+-++.+. |+.+.-++ .+-.+|...|+ .+...+.|
T Consensus 483 L----~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 483 L----TACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred H----HHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 1 12234468999999999999999888887664 34333222 34456666666 44443333
No 337
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.52 E-value=0.021 Score=58.26 Aligned_cols=183 Identities=16% Similarity=0.128 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhhhccccHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRI----DPCYHRAHHRLAMLYFR---LGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
.++...++-.+|....+|+.-+...+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..++....+.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--- 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD--- 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC---
Confidence 3556677777888888998888888877666 44556777788888888 8888888888888655133333
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH---------ccCHHHHHHHhhccccCChh
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR---------LQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~ 435 (713)
++.+..+|.+|-. ....++|+.+|.++..+.++
T Consensus 217 --------------------------------------~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 217 --------------------------------------PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred --------------------------------------hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 3445555554432 22378999999999998876
Q ss_pred hHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Q 005125 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515 (713)
Q Consensus 436 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 515 (713)
.+. -.+++.++...|...+...-+++.. . .+...+.+.|.
T Consensus 259 ~Y~-----------GIN~AtLL~~~g~~~~~~~el~~i~----------~------------~l~~llg~kg~------- 298 (374)
T PF13281_consen 259 YYS-----------GINAATLLMLAGHDFETSEELRKIG----------V------------KLSSLLGRKGS------- 298 (374)
T ss_pred ccc-----------hHHHHHHHHHcCCcccchHHHHHHH----------H------------HHHHHHHhhcc-------
Confidence 433 2345556666665333222222211 0 12222222221
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 516 YSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 516 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
.-.-.+...+-.++.+..-.|++++|++.+++++.+.|..
T Consensus 299 -----~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 299 -----LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred -----ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 1111234444556666666777777777777777765544
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.52 E-value=0.2 Score=55.73 Aligned_cols=280 Identities=11% Similarity=-0.022 Sum_probs=173.2
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK-ATYRSNKSAALIGLGRQIEALVECKEAIRIDP-----CYHRA 329 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~ 329 (713)
+.-.+.+..-+..+...|...+|+.+.-.| -+|.. +..+...+.-+...++.. .+...++.-| .++..
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~L 417 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRL 417 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchH
Confidence 444667777777888888888888765443 23322 122333333344444432 3333333333 23556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhcc-ccH-HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChH----
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKKSSSLANQ-KDI-AKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP---- 403 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p-~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---- 403 (713)
....|.......++.+|.....++...+.+ ++. .........-.++.+....++.+.|++..+.++..-|....
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 667788888899999999988887762222 221 11222334455677788899999999999999988776532
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCH--HHHHHHHHHH----HHhC
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRF--EDAVKTAQDA----AQID 477 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~a----l~~~ 477 (713)
.++..+|.+..-.|++++|..+..++.+....+.... ....+.+..+.++..+|+. .+....|... +...
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~----l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH----LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 5667789999999999999999999877644332221 1344667778889999933 3333333322 2223
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc----CCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH----EAYN---SVLLCNRAACRSKLGQYEKAVEDC 550 (713)
Q Consensus 478 p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 550 (713)
|-+..... ..+.++...-+++.+.......++. .|.. ...++.|+.++...|++++|...+
T Consensus 574 ~~~~f~~~------------~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 574 PRHEFLVR------------IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred ccchhHHH------------HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33322222 1233333333366666666666554 2322 223458999999999999999999
Q ss_pred HHHHHhC
Q 005125 551 TAALIVM 557 (713)
Q Consensus 551 ~~al~~~ 557 (713)
.....+-
T Consensus 642 ~~~~~l~ 648 (894)
T COG2909 642 DELERLL 648 (894)
T ss_pred HHHHHHh
Confidence 8887764
No 339
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0051 Score=59.30 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=95.3
Q ss_pred hhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 247 FPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY 326 (713)
Q Consensus 247 a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 326 (713)
..+++.+.-|...+.-+..+......|++.+|...|..++...|++.++...++.+|...|+.+.|...+... |..
T Consensus 122 lr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~ 197 (304)
T COG3118 122 LRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQ 197 (304)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----ccc
Confidence 4455555444455566777788888888888888888888888888888888888888888888887766653 322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY 406 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 406 (713)
...-...+ ....++.+.++-. ..+ +..+++.+..+|++. .+-
T Consensus 198 ~~~~~~~~--------l~a~i~ll~qaa~-~~~----------------------------~~~l~~~~aadPdd~-~aa 239 (304)
T COG3118 198 AQDKAAHG--------LQAQIELLEQAAA-TPE----------------------------IQDLQRRLAADPDDV-EAA 239 (304)
T ss_pred chhhHHHH--------HHHHHHHHHHHhc-CCC----------------------------HHHHHHHHHhCCCCH-HHH
Confidence 11110010 1112333444332 111 122344455667664 777
Q ss_pred HHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 407 ALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
+.+|..+...|+.++|++.+-..+..+..
T Consensus 240 ~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 240 LALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 78899999999999999988877765543
No 340
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.47 E-value=0.00054 Score=59.21 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=59.7
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC---------------------CCcHhhHHHcCCCcccEEEE
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV---------------------EDHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~---------------------d~~~~~~~~~~v~~~Pt~~~ 686 (713)
+..++.|++ |+.|..+.|.+..+.+.+. +..+.++. |....+...++|.++|++.+
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~v 99 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIVI 99 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEEE
Confidence 567777777 9999999999999887753 33333332 23456888999999999999
Q ss_pred EECCeEeeeecCC-CHHHHHHHH
Q 005125 687 YKNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 687 ~~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
+..|..+..+.|. +++.|.+.+
T Consensus 100 id~~gi~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 100 VDPGGIVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred EcCCCeEEEEeccCCHHHHHhhc
Confidence 9765588889998 889887653
No 341
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.46 E-value=0.004 Score=64.76 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=89.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHH
Q 005125 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCN 532 (713)
Q Consensus 453 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 532 (713)
-|..+...|+...|+.++..|+...|....+-.. +++.++..-|-..+|-..+.+++.+....+..++.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v-----------~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~ 681 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV-----------NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS 681 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHH-----------HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence 3555566899999999999999998876655443 79999999999999999999999999888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 533 RAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 533 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+|..|..+.+.+.|++.|+.|++++|+++....
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhcCCCChhhHH
Confidence 999999999999999999999999999876544
No 342
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.46 E-value=0.00086 Score=62.01 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=67.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCC----------------------cHhhHHHcCCCccc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVED----------------------HPYIAKSEGVSSIP 682 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~----------------------~~~~~~~~~v~~~P 682 (713)
....++.|++ |+.|+...+.+.++.+++++ +.++.++.|. ...+...++|..+|
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 140 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLP 140 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcC
Confidence 3457777888 99999999999999988843 7777887653 35677889999999
Q ss_pred EEEEEE-CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 683 AFKIYK-NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
++.++. +|+.+....|. +.+++.+++++.+
T Consensus 141 ~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 141 TTFLIDKDGKVVKVITGEMTEEQLEEYLEKIK 172 (173)
T ss_pred eEEEECCCCcEEEEEeCCCCHHHHHHHHHHhc
Confidence 877664 78888888998 9999999988753
No 343
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00048 Score=72.46 Aligned_cols=89 Identities=17% Similarity=0.340 Sum_probs=75.7
Q ss_pred HHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecC
Q 005125 622 FRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698 (713)
Q Consensus 622 ~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g 698 (713)
+.......+..++.|++ ||+|+.+.|.+.+++..+ +.+.+..||++.+..++..++|.+.||+.+|..|..+-...|
T Consensus 40 ~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~ 119 (383)
T KOG0191|consen 40 FDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSG 119 (383)
T ss_pred HHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccC
Confidence 34455667888888888 999999999999998777 458999999999999999999999999999999955666777
Q ss_pred C-CHHHHHHHHHh
Q 005125 699 H-QCELLEKSVKL 710 (713)
Q Consensus 699 ~-~~~~~~~~~~~ 710 (713)
. +.+.+..++..
T Consensus 120 ~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 120 PRNAESLAEFLIK 132 (383)
T ss_pred cccHHHHHHHHHH
Confidence 7 88888887754
No 344
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.44 E-value=0.0013 Score=50.90 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=55.4
Q ss_pred Eeec-CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecC-C-CHHHHHHHHH
Q 005125 635 LFCS-KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG-H-QCELLEKSVK 709 (713)
Q Consensus 635 ~f~~-cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~-~~~~~~~~~~ 709 (713)
+|.. |+.|..+...++++...++ +.+--++..+.+.+ ..+||.++|++ +.||+. .+.| . +.++|.+||+
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPal--vIng~~--~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPAL--VINGKV--VFVGRVPSKEELKELLE 76 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEE--EETTEE--EEESS--HHHHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEE--EECCEE--EEEecCCCHHHHHHHhC
Confidence 3555 9999999999999999885 77777788888888 99999999997 458875 3677 4 8899999885
No 345
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.44 E-value=0.0062 Score=62.00 Aligned_cols=171 Identities=13% Similarity=0.027 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCCHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAI----NSSKATYRSNKSAALIG---LGRQIEALVECKEAI-RIDPCYHR 328 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~ 328 (713)
-+++....+=..|....+|+.-+.+.+..-.+ -++.....+.+|.++-+ .|+.++|+..+..++ ...+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 34566777777888888999888888876655 34556677788888888 889999999998844 45666788
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH-------HHH
Q 005125 329 AHHRLAMLYFRL---------GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLK-------ETQ 392 (713)
Q Consensus 329 ~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-------~~~ 392 (713)
.+..+|.+|... ...++|+..|.++.+ ++|+.... .+.+..+...|.-.+... .+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe-~~~~~Y~G-------IN~AtLL~~~g~~~~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE-IEPDYYSG-------INAATLLMLAGHDFETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc-CCccccch-------HHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 888888888643 247788999999988 88765322 222222222222111111 111
Q ss_pred HHH-Hc---CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 393 NVI-SF---GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 393 ~al-~~---~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
..+ +. .+...-..+..++.+..-.|++++|++.+++++++.|.
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 111 11 12221234445678888899999999999999988764
No 346
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.43 E-value=0.0088 Score=64.39 Aligned_cols=162 Identities=15% Similarity=0.008 Sum_probs=123.2
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCC-HHH-----HHHHHH-HHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 270 YNKARFEDALALYDRAIAINSSK-ATY-----RSNKSA-ALI----GLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 270 ~~~g~~~~A~~~~~~al~~~p~~-~~~-----~~~la~-~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
--.||-+.++..+.++.+...-. +-+ .++... .+. .....+.|.+.++...+..|+..-.++..|.++.
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34689999999999987732211 111 111111 111 2456788999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
..|+.++|++.|++++. ...... ......++.++..+..+.+|++|...+....+.+.-......+..|.++...++
T Consensus 279 ~~g~~~~Ai~~~~~a~~-~q~~~~--Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIE-SQSEWK--QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HhcCHHHHHHHHHHhcc-chhhHH--hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 99999999999999875 333322 223455788899999999999999999999998777666677778999999999
Q ss_pred H-------HHHHHHhhccccCCh
Q 005125 419 H-------QEAHDSYNKSPKFCL 434 (713)
Q Consensus 419 ~-------~~A~~~~~~al~~~~ 434 (713)
. ++|..+|.++..+..
T Consensus 356 ~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 356 EEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred chhhhhhHHHHHHHHHHHHHHHh
Confidence 9 888888888765443
No 347
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.43 E-value=0.0017 Score=55.05 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=65.1
Q ss_pred hcCCceEEEeec--CchhHHHHHH-HH--HHHHhC-CCcEEEEEeCC--CcHhhHHHcCCCcccEEEEEE--CCeEeeee
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQL-ME--QVCKRF-PSVNFLKVEVE--DHPYIAKSEGVSSIPAFKIYK--NGSRVKEI 696 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~-~~--~l~~~~-p~~~~~~v~~d--~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~ 696 (713)
......++.|++ |.+|+.+.+. |. .+.+.. ...+++.+|++ +...++..+++.++|++.++. +|+.+.++
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence 345556666777 9999998753 32 222222 25788888887 466788999999999999986 59999999
Q ss_pred cCC-CHHHHHHHHHhhh
Q 005125 697 PGH-QCELLEKSVKLYS 712 (713)
Q Consensus 697 ~g~-~~~~~~~~~~~~~ 712 (713)
+|. +++.+...|+++.
T Consensus 95 ~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 95 SGNITPEDLLSQLIEFL 111 (114)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 999 9999999988753
No 348
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.01 Score=53.54 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=71.8
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
-..++..+...+++++|+..++.++....+..- .+.+-..++.+...+|++++|+..+...-. +.......
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l-------k~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~ 162 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENL-------KALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVA 162 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHH
Confidence 344677888889999999999988876554332 234667788999999999999887765322 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 486 GVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 486 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
. ..|.++...|+-++|+..|+++++..++.
T Consensus 163 e-----------lrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 163 E-----------LRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred H-----------HhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 1 47999999999999999999999887543
No 349
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00088 Score=57.12 Aligned_cols=89 Identities=15% Similarity=0.226 Sum_probs=62.2
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHHHHH---HHHhC-CCcEEEEEeCCC----------------cHhhHHHcCC
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQ---VCKRF-PSVNFLKVEVED----------------HPYIAKSEGV 678 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~---l~~~~-p~~~~~~v~~d~----------------~~~~~~~~~v 678 (713)
++........-.+++|.. |..|.++...+.. +.+-. +...++.+++.. ..++++.++|
T Consensus 34 d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 34 DNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred HHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 344444445556666766 9999999875433 32222 445555555432 2489999999
Q ss_pred CcccEEEEEEC-CeEeeeecCC-CHHHHHHHHH
Q 005125 679 SSIPAFKIYKN-GSRVKEIPGH-QCELLEKSVK 709 (713)
Q Consensus 679 ~~~Pt~~~~~~-g~~~~~~~g~-~~~~~~~~~~ 709 (713)
++.|||+||.. |+.+..+||. +++++..-++
T Consensus 114 rstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 114 RSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred ccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999999985 8999999999 8888766553
No 350
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.38 E-value=0.0015 Score=59.25 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=60.9
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-------------HhhHHHcCC--CcccEEEEE-ECCeEe-
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-------------PYIAKSEGV--SSIPAFKIY-KNGSRV- 693 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-------------~~~~~~~~v--~~~Pt~~~~-~~g~~~- 693 (713)
++.||+ |++|++..|.+.++.++++ +.++-|.+|.. ..+...+++ ..+|+..++ ++|..+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 667888 9999999999999999984 77776766633 125567785 689987777 578775
Q ss_pred eeecCC-CHHHHHHHHHhh
Q 005125 694 KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~ 711 (713)
....|. +.++|.+.|++.
T Consensus 152 ~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTV 170 (181)
T ss_pred EEEECCCCHHHHHHHHHHH
Confidence 578899 989998888764
No 351
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.37 E-value=0.087 Score=58.23 Aligned_cols=269 Identities=14% Similarity=0.033 Sum_probs=175.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC--
Q 005125 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGL-----GRQIEALVECKEAIRI-----DPCYHRAHHRLAMLYFRLG-- 341 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 341 (713)
+..+|..+|+.+.+. .+..+.+.+|.+|..- .+.+.|+.+|+.+... .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 456788888887665 4677888888888764 6899999999999771 1225668889999999853
Q ss_pred ---CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh---hcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 342 ---EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAREL---KRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 342 ---~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
+++.|+.+|.++.. ....+ ..+.++..+..- .+...|..+|..+.+.+.. .+.+.++.+|..
T Consensus 305 ~~~d~~~A~~~~~~aA~-~g~~~--------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~ 372 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAE-LGNPD--------AQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYEL 372 (552)
T ss_pred ccccHHHHHHHHHHHHh-cCCch--------HHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHh
Confidence 78889999999988 55443 233344443332 4678899999888877653 566777777764
Q ss_pred ----ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 416 ----LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA-GRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 416 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
..+...|..+|.++..... +.+...++..+... ++++.+...+....+..-..+.....+
T Consensus 373 G~gv~r~~~~A~~~~k~aA~~g~------------~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~--- 437 (552)
T KOG1550|consen 373 GLGVERNLELAFAYYKKAAEKGN------------PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAY--- 437 (552)
T ss_pred CCCcCCCHHHHHHHHHHHHHccC------------hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHH---
Confidence 3478889999998876552 22344444444433 777777666665555433332221100
Q ss_pred HHHHHHHHHHHHHH-H---cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCChH
Q 005125 491 KAMASARLRGNLLF-K---ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL----GQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 491 ~~~~~~~~lg~~~~-~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~ 562 (713)
+........ . ..+...+...+.++.. ..+..+...+|.+|..- .+++.|...|.+|.... ..
T Consensus 438 -----l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~ 507 (552)
T KOG1550|consen 438 -----LLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQ 507 (552)
T ss_pred -----HHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hH
Confidence 000110111 1 2255666677766654 35678888899888765 35899999999988776 44
Q ss_pred HHH---------------HHHHHHHHHHHHhCCC
Q 005125 563 ARL---------------EAAIQDYEMLIREIPG 581 (713)
Q Consensus 563 a~~---------------~~A~~~~~~al~~~p~ 581 (713)
+.+ ..|..+|.++.+.+..
T Consensus 508 ~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 508 ALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred HHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 433 5677777777665543
No 352
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.35 E-value=0.00091 Score=56.73 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=59.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCc-----------------------HhhHHHcCCCcc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDH-----------------------PYIAKSEGVSSI 681 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~-----------------------~~~~~~~~v~~~ 681 (713)
.+..++.|++ |+.|+...+.+.++...+ +++.++.|+.+.. ..+...+++..+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 3456777777 999999999999999888 6799999999885 778899999999
Q ss_pred cEEEEEE-CCeEeeeecC
Q 005125 682 PAFKIYK-NGSRVKEIPG 698 (713)
Q Consensus 682 Pt~~~~~-~g~~~~~~~g 698 (713)
|++.++. +|+.+..+.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 9998885 7888877765
No 353
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.31 E-value=0.0089 Score=53.34 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHH--H--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Q 005125 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK------EVIKGVK--M--AKAMASARLRGNLLFKASKYKEACYAYSEGL 520 (713)
Q Consensus 451 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~--~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 520 (713)
...|......++.+.++..+++++.+..... ..|..-. . ..-+.++..++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3446666778899999999999998743221 1122111 1 1224556678889999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 521 EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 521 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
..+|.+-.+|..+-.+|..+|+..+|+..|++...
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998754
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.30 E-value=0.48 Score=53.39 Aligned_cols=313 Identities=12% Similarity=0.043 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHH-HHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHH----
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSS---KAT-YRSNK--SAALIGLGRQIEALVECKEAIRID--PCYHR---- 328 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~-~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~---- 328 (713)
+.+.++.++.+.+... |+..++++++.... ... ..+.+ ...+...+++..|++.++...... ..++.
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 3456677777777766 99999998876433 222 11222 223333479999999999888765 34432
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhh-----hccccHHHHHHHHHHHHH--HHHHHHhhcHHHHHHH---HHHHHHc-
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSL-----ANQKDIAKAEALHKHLTK--CNEARELKRWNDLLKE---TQNVISF- 397 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~---~~~al~~- 397 (713)
+....+.++...+..+++++..+++... .++.. ....+..+... .......|++..+... ++..++.
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~--~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~ 258 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV--HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI 258 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC--CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2333456666777788888877777441 12221 11122222222 2233344554444333 2222221
Q ss_pred --CC-------C---------------C-h------------HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhH---
Q 005125 398 --GA-------D---------------S-A------------PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYY--- 437 (713)
Q Consensus 398 --~p-------~---------------~-~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--- 437 (713)
.+ + . . .-+|..-|......+..++|.++++++++.-.+..
T Consensus 259 ~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~ 338 (608)
T PF10345_consen 259 KKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKS 338 (608)
T ss_pred hcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccC
Confidence 11 0 0 0 12344446667777777788888888876544433
Q ss_pred --------------HhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 438 --------------TKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 438 --------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
..|. ..-...++..++.+.+-.+++..|....+.+.......+.... .......++-.|..+
T Consensus 339 ~~~~~~sl~~~~~~~~~~-~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~---~~~~~~~~yL~gl~~ 414 (608)
T PF10345_consen 339 PSAPSESLSEASERIQWL-RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLY---ESLYPLLHYLLGLYY 414 (608)
T ss_pred CCCCCcCHHHHHHhHHHH-HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchh---hhhhHHHHHHHHHHH
Confidence 0000 0012345667788888899999999999887765432211000 000012233588889
Q ss_pred HHcccHHHHHHHHH--------HHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC---ChHHHHHHH
Q 005125 504 FKASKYKEACYAYS--------EGLEHEAYN---SVLLCNRAACRSKLGQYEKAVEDCTAALI-VMPS---YSKARLEAA 568 (713)
Q Consensus 504 ~~~g~~~~A~~~~~--------~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~---~~~a~~~~A 568 (713)
...|+.+.|...|. .+....+.+ .-+..|+..++...+.-......+..+++ ++|. .+...+..|
T Consensus 415 q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a 494 (608)
T PF10345_consen 415 QSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTA 494 (608)
T ss_pred HHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHH
Confidence 99999999999998 444444433 33455777787776664443323444443 3442 233333444
Q ss_pred HHHHHHHHHhCC
Q 005125 569 IQDYEMLIREIP 580 (713)
Q Consensus 569 ~~~~~~al~~~p 580 (713)
-..+-.++...+
T Consensus 495 ~~~~~~~~~~~~ 506 (608)
T PF10345_consen 495 YCLVLATYNTFE 506 (608)
T ss_pred HHHHHHHHhhCC
Confidence 444444444333
No 355
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.30 E-value=0.00075 Score=55.05 Aligned_cols=80 Identities=25% Similarity=0.434 Sum_probs=63.0
Q ss_pred hHHHHHhhcCCceEEEeec----CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 620 ERFRHFVTSPGMAVVLFCS----KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~----cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
..+..++...+..+++|.. +..+.-+.=+++++.+.+++ .....|..+....++..||+...|+++||++|+.++
T Consensus 17 ~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG 96 (107)
T PF07449_consen 17 DTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGRYLG 96 (107)
T ss_dssp CCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEEE
T ss_pred hhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCEEEE
Confidence 3555666677777777766 35556666789999999976 455666777788999999999999999999999999
Q ss_pred eecCC
Q 005125 695 EIPGH 699 (713)
Q Consensus 695 ~~~g~ 699 (713)
.|+|.
T Consensus 97 ~i~gi 101 (107)
T PF07449_consen 97 AIEGI 101 (107)
T ss_dssp EEESS
T ss_pred EecCe
Confidence 99986
No 356
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00029 Score=64.41 Aligned_cols=96 Identities=25% Similarity=0.445 Sum_probs=77.7
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
++++.....| ........++.|++ |..|.++..++..+++..+.+.|++.+.+++++|+..+.|...|.+.++++|
T Consensus 3 v~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~ 80 (227)
T KOG0911|consen 3 VQFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG 80 (227)
T ss_pred ceeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeecc
Confidence 4555555666 22334445555777 8999999999999998888899999999999999999999999999999999
Q ss_pred eEeeeecCCCHHHHHHHHHh
Q 005125 691 SRVKEIPGHQCELLEKSVKL 710 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~~ 710 (713)
+.++++.|+++..+...++.
T Consensus 81 ~~v~~l~~~~~~~~~~~~~~ 100 (227)
T KOG0911|consen 81 EKVDRLSGADPPFLVSKVEK 100 (227)
T ss_pred hhhhhhhccCcHHHHHHHHH
Confidence 99999999966555555443
No 357
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.025 Score=62.85 Aligned_cols=216 Identities=13% Similarity=0.075 Sum_probs=142.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005125 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAE 344 (713)
Q Consensus 265 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 344 (713)
+|......+-|++|...|++- .-+..+.. ......+..+.|.++.+++ +.+..|..+|.+....|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 344555566666776666652 11122221 1223446666666666654 34789999999999999999
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHH
Q 005125 345 KAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHD 424 (713)
Q Consensus 345 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 424 (713)
+|++.|-++ -+|.+ +..........|.|++-+.++..+-+...+. .+-..+-.+|.+.++..+-.+
T Consensus 1122 dAieSyika---dDps~---------y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1122 DAIESYIKA---DDPSN---------YLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred HHHHHHHhc---CCcHH---------HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHH
Confidence 999999876 44543 5556666777889999888888777654432 233344556777777766555
Q ss_pred HhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 425 SYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLF 504 (713)
Q Consensus 425 ~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~ 504 (713)
.+.- |+ ..-....|.-++..|.|+.|.-+|... .-|. .++..+.
T Consensus 1188 fi~g-----pN-----------~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a------------~La~TLV 1231 (1666)
T KOG0985|consen 1188 FIAG-----PN-----------VANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFA------------KLASTLV 1231 (1666)
T ss_pred HhcC-----CC-----------chhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHH------------HHHHHHH
Confidence 4431 21 112344677888888888887777532 1222 5788888
Q ss_pred HcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 505 KASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAV 547 (713)
Q Consensus 505 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 547 (713)
.+|+|..|+..-++| ++..+|...+.++...+.+.-|.
T Consensus 1232 ~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred HHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHH
Confidence 899999999888876 35678888888888877777765
No 358
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.27 E-value=0.00022 Score=69.42 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=87.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHH
Q 005125 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNR 533 (713)
Q Consensus 454 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 533 (713)
+.-.+..|.+++|++.|..++.++|.....+. ..+.+++++++...|+..|..+++++|+.+.-|-..
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~------------kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr 188 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYA------------KRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR 188 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcc------------cccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence 44455678899999999999999999988887 699999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 534 AACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 534 a~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+.....+|+|++|..++..+.+++-+.
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhccccH
Confidence 999999999999999999999987653
No 359
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.036 Score=52.33 Aligned_cols=159 Identities=14% Similarity=0.060 Sum_probs=127.0
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA-AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 491 (713)
+.+...-..|+.+.+.++.++|.++. +|..+-.++.. ..+..+-++++.+.++-+|.+..+|..
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYT----------VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHH----- 117 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYT----------VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHH----- 117 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccch----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHH-----
Confidence 33445556788888888888886554 44444444444 446788899999999999999999983
Q ss_pred HHHHHHHHHHHHHHcccHH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----
Q 005125 492 AMASARLRGNLLFKASKYK-EACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----- 565 (713)
Q Consensus 492 ~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----- 565 (713)
.-.+....|+.. .-++..+.++..+..+..+|..+-.+....+.++.-+.+....++.+--+..||.
T Consensus 118 -------Rr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfv 190 (318)
T KOG0530|consen 118 -------RRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFV 190 (318)
T ss_pred -------HHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEE
Confidence 556666777877 7889999999999999999999999999999999999999999999888777776
Q ss_pred -------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 566 -------------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 566 -------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
+.-+.+-.+.+.+.|+|..++.-|.-..
T Consensus 191 i~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l 231 (318)
T KOG0530|consen 191 ITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLL 231 (318)
T ss_pred EEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 5557778888999999999888765443
No 360
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.23 E-value=0.0011 Score=78.45 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=67.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEe-----C----------------------CCcHhhHHHcC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVE-----V----------------------EDHPYIAKSEG 677 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~-----~----------------------d~~~~~~~~~~ 677 (713)
.+.+++.||+ |++|+...|.|+++.++|++ +.++.|. . |....+...++
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 4567777999 99999999999999999854 6666663 1 22345677899
Q ss_pred CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|.++|+++++ ++|+.+.++.|. ..+.|.++|+..
T Consensus 500 V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 500 VSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 9999999999 689999999999 889999988765
No 361
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.19 E-value=0.043 Score=52.11 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=59.5
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-----------cHhhHHHcCCCcccEEEEEEC-CeEee-
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-----------HPYIAKSEGVSSIPAFKIYKN-GSRVK- 694 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-----------~~~~~~~~~v~~~Pt~~~~~~-g~~~~- 694 (713)
...+++|+. |+.|+.+.|++..++.+| ++.++.|++|- .+.+++.+||..+|++.+..- +..+.
T Consensus 121 ~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 121 KYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred CeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEE
Confidence 344556665 999999999999999998 57888888873 467889999999998877764 42433
Q ss_pred eecCC-CHHHHHHHH
Q 005125 695 EIPGH-QCELLEKSV 708 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~ 708 (713)
--.|. +.++|.+.|
T Consensus 200 v~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 200 VSQGFMSLDELEDRI 214 (215)
T ss_pred EeeecCCHHHHHHhh
Confidence 34566 888887754
No 362
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.18 E-value=0.0007 Score=42.97 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 528 VLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 528 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56778888888888888888888888888774
No 363
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.16 E-value=0.18 Score=50.46 Aligned_cols=122 Identities=15% Similarity=0.042 Sum_probs=69.1
Q ss_pred HHhcCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCC----------C
Q 005125 270 YNKARFEDALALYDRAIAIN----SSK----ATYRSNKSAALIGLG-RQIEALVECKEAIRI----DPC----------Y 326 (713)
Q Consensus 270 ~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p~----------~ 326 (713)
..+|+++.|..+|.++-... |+. ...+++.|......+ ++++|+..++++.++ .+. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46777788888877775543 322 346677777777777 888888888777776 111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHH---HHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC
Q 005125 327 HRAHHRLAMLYFRLGEAEKAV---SHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG 398 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 398 (713)
..++..++.+|...+.++... ...+.+.. -.|+.+ ..++....+....++.+.+.+.+.+++..-
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~------~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKP------EVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCc------HHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 345667777777776655333 33333322 333332 112222222222566666666666666553
No 364
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.013 Score=52.95 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
....++..+...+++++|+..++.++... .+.....+ .-..++.+.+.+|.+++|+..+....... -.+.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~De~lk~l--------~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~ 160 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT-KDENLKAL--------AALRLARVQLQQKKADAALKTLDTIKEES-WAAI 160 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc-hhHHHHHH--------HHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHH
Confidence 45667889999999999999999998643 33332221 11269999999999999999887644321 1234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
.-..+|.++...|+.++|+..|+++++.+++..
T Consensus 161 ~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 161 VAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 466789999999999999999999999876543
No 365
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.16 Score=48.18 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=99.0
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-H
Q 005125 268 EAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAE-K 345 (713)
Q Consensus 268 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~ 345 (713)
++.+...-..|+.+-..+|.++|.+..+|..+-.++..++ +..+-++++.+.++-+|.+..+|...-.+....|++. .
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 3445667788999999999999999999988888887765 6788899999999999999999999999999999988 7
Q ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 346 AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 346 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
-++..+.++. .+..+. .++..+-.+....+.|+.-+.+....|..+-
T Consensus 132 ELef~~~~l~-~DaKNY------HaWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 132 ELEFTKLMLD-DDAKNY------HAWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred hHHHHHHHHh-ccccch------hhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 8889999988 777763 4444455555556666666666666665543
No 366
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.06 E-value=0.0011 Score=42.02 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 448 YLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 448 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 480 (713)
.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478999999999999999999999999999853
No 367
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.06 E-value=0.0025 Score=55.76 Aligned_cols=67 Identities=9% Similarity=0.198 Sum_probs=50.5
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCc------------------------HhhHHHcCCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDH------------------------PYIAKSEGVS 679 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~------------------------~~~~~~~~v~ 679 (713)
..+++.|++ |++|+...|.+.++.+++ +++.++.|++|.. ..++..++|.
T Consensus 19 k~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 98 (131)
T cd03009 19 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIE 98 (131)
T ss_pred cEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCC
Confidence 456777888 999999999998877654 2566666666533 3567789999
Q ss_pred cccEEEEEE-CCeEeeee
Q 005125 680 SIPAFKIYK-NGSRVKEI 696 (713)
Q Consensus 680 ~~Pt~~~~~-~g~~~~~~ 696 (713)
.+|++.++. +|+.+.+.
T Consensus 99 ~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 99 GIPTLIILDADGEVVTTD 116 (131)
T ss_pred CCCEEEEECCCCCEEccc
Confidence 999999996 78766543
No 368
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.05 E-value=0.6 Score=49.83 Aligned_cols=101 Identities=9% Similarity=-0.034 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSA-ALIGLGRQIEALVECKEAIRIDPCY---HRAH 330 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 330 (713)
-|.--..|...|..-++.|..+.++..|++++.--|...+.|..+-. +-...|+.+.-...|++|+.....+ ...|
T Consensus 75 yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lW 154 (577)
T KOG1258|consen 75 YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLW 154 (577)
T ss_pred CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHH
Confidence 34445566777777777777777777777777777776666654433 3334466666667777777664433 3445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
-.+-..-..++++..-...|++.++
T Consensus 155 dkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 155 DKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHh
Confidence 5555555566677777777777766
No 369
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.01 E-value=0.0024 Score=67.50 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=79.5
Q ss_pred eeecchhHHHHHhhcCC--ceEEEeec--CchhHHHHHHHH---HHHHhCCCcEEEEEeCCCc----HhhHHHcCCCccc
Q 005125 614 VFVSSNERFRHFVTSPG--MAVVLFCS--KAEHKQVLQLME---QVCKRFPSVNFLKVEVEDH----PYIAKSEGVSSIP 682 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~~~--~~vv~f~~--cg~c~~~~~~~~---~l~~~~p~~~~~~v~~d~~----~~~~~~~~v~~~P 682 (713)
+.+.+..+.++.+.+.. ++++.|++ |-.|+.+.++.- ++..+.++++.+++|+... .++.+++++.++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 44445556777776666 88888999 999999998743 3445568999999998864 3566789999999
Q ss_pred EEEEEE-CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 683 AFKIYK-NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
++++|. +|++...++|. +.+.+.++|++..
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999998 78888779999 9999999998764
No 370
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.00 E-value=0.0029 Score=55.33 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=49.0
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcH-------------------------hhHHHcCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHP-------------------------YIAKSEGV 678 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~-------------------------~~~~~~~v 678 (713)
+.+++.|++ |++|+...|.++++.+.+. ++.++.|+.|..+ .++..++|
T Consensus 18 k~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v 97 (132)
T cd02964 18 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKV 97 (132)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCC
Confidence 456666888 9999999999998876652 4667777666432 45667999
Q ss_pred CcccEEEEEE-CCeEeee
Q 005125 679 SSIPAFKIYK-NGSRVKE 695 (713)
Q Consensus 679 ~~~Pt~~~~~-~g~~~~~ 695 (713)
.++|+++++. +|+.+.+
T Consensus 98 ~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 98 EGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCEEEEECCCCCEEch
Confidence 9999999886 5766543
No 371
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.73 Score=49.72 Aligned_cols=187 Identities=19% Similarity=0.114 Sum_probs=103.6
Q ss_pred CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HH---HHHHHHHHHHHcCCHHHHHHH
Q 005125 245 GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK------AT---YRSNKSAALIGLGRQIEALVE 315 (713)
Q Consensus 245 ~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~---~~~~la~~~~~~g~~~~A~~~ 315 (713)
++|+++.+ +..+|..|..+|......-.++.|...|-+.-.. |.- .. --...|.+-.--|++++|.+.
T Consensus 680 edA~qfiE--dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 680 EDAIQFIE--DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred HHHHHHHh--cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 44555554 3456788999999988888888888887765322 111 00 012345555566888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005125 316 CKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVI 395 (713)
Q Consensus 316 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 395 (713)
|-.+-.. + .--.++..+|++-.-.+.++..-. +.+....-.++.+.+..+..+..|++|.++|...
T Consensus 757 yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~-----d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~- 822 (1189)
T KOG2041|consen 757 YLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGS-----DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC- 822 (1189)
T ss_pred hhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 7654221 1 112345566666666655543222 1111223345666777777777788887777654
Q ss_pred HcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 396 SFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470 (713)
Q Consensus 396 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 470 (713)
....+...+|..+.+|++-..+.+...+..+ .+-.+|..+...|.-++|.+.|
T Consensus 823 --------~~~e~~~ecly~le~f~~LE~la~~Lpe~s~--------------llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 823 --------GDTENQIECLYRLELFGELEVLARTLPEDSE--------------LLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred --------cchHhHHHHHHHHHhhhhHHHHHHhcCcccc--------------hHHHHHHHHHhhchHHHHHHHH
Confidence 1223345666666666655555444433222 3333455555555555555444
No 372
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.99 E-value=0.55 Score=48.26 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHH------------------------------------
Q 005125 449 LLIVRAQVYIAAGR-FEDAVKTAQDAAQIDPNNKEVIKGVKMAK------------------------------------ 491 (713)
Q Consensus 449 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~------------------------------------ 491 (713)
-+...|.-+.+.|. -++|+..++.+++..+.+.+..+..-..-
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence 44555667777777 78899999999998888876554321110
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH---HHH
Q 005125 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL---EAA 568 (713)
Q Consensus 492 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~---~~A 568 (713)
.+.-...=|.-++.+|+|.++.-+-.=..+++| .+.++..+|.|++...+|++|..++... |-+.+.+- .+|
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~dskvqKA 535 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMRDSKVQKA 535 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhHHHHHHHH
Confidence 011122334556778999999888888888889 8899999999999999999999887642 22333332 556
Q ss_pred HHHHHHHH
Q 005125 569 IQDYEMLI 576 (713)
Q Consensus 569 ~~~~~~al 576 (713)
+...++-+
T Consensus 536 l~lCqKh~ 543 (549)
T PF07079_consen 536 LALCQKHL 543 (549)
T ss_pred HHHHHHhh
Confidence 55555443
No 373
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.97 E-value=0.051 Score=56.17 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=103.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh----------------------hccccHHHHHHHHHHHHHHHH
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL----------------------ANQKDIAKAEALHKHLTKCNE 377 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------------~~p~~~~~~~~~~~~~~~~~~ 377 (713)
+..+|-+.+++..++.++..+|+++.|.+.+++|+-. ++-.......-+.+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 3445666666666666666666666666555555431 111111122334556666777
Q ss_pred HHHhhcHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHccCHHHHHHHhhccccCCh-hhHHhhhcccCcHHHHHHHHH
Q 005125 378 ARELKRWNDLLKETQNVISFGAD-SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCL-EYYTKLFGLAGGAYLLIVRAQ 455 (713)
Q Consensus 378 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~lg~ 455 (713)
..+.|-|..|++..+-.+.++|. ++-.+.+.+-...++.++|+--++.++....... ++.. .-+...+.++.
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~------~lPn~a~S~aL 186 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS------LLPNFAFSIAL 186 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh------hCccHHHHHHH
Confidence 88899999999999999999999 5445666666677788899888887776544211 1011 12346677888
Q ss_pred HHHHcCCH---------------HHHHHHHHHHHHhCCCCH
Q 005125 456 VYIAAGRF---------------EDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 456 ~~~~~g~~---------------~~A~~~~~~al~~~p~~~ 481 (713)
+++..++- ++|...+.+|+...|.-.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 88888888 899999999999887643
No 374
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.93 E-value=0.052 Score=56.11 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=110.6
Q ss_pred HHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhh-----c-----------ccCc---HHHHHHHH
Q 005125 394 VISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLF-----G-----------LAGG---AYLLIVRA 454 (713)
Q Consensus 394 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~-----------~~~~---~~~~~~lg 454 (713)
.++..|-+. ..+..++.++...|+++.|.+.+++|+-.........+ . ...+ -.+++...
T Consensus 32 ll~~~PyHi-dtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 32 LLQKNPYHI-DTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345566665 67777888888888888888888887533221111111 0 0011 22455667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-----CCHH
Q 005125 455 QVYIAAGRFEDAVKTAQDAAQIDPN-NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA-----YNSV 528 (713)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~ 528 (713)
..+.+.|-+..|.++.+-.+.++|. ++-...+ .+-....+.++|+--++.++....... .-|.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll-----------~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn 179 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLL-----------FIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN 179 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHH-----------HHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc
Confidence 7788899999999999999999999 6644432 355556777888877887776555211 1346
Q ss_pred HHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCChHHHH
Q 005125 529 LLCNRAACRSKLGQY---------------EKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 529 ~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.-+.++.++..+++. ++|...+.+|+...|.-....+
T Consensus 180 ~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll 231 (360)
T PF04910_consen 180 FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLL 231 (360)
T ss_pred HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHH
Confidence 778888999999998 8999999999998887655544
No 375
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.93 E-value=0.005 Score=47.85 Aligned_cols=68 Identities=12% Similarity=0.308 Sum_probs=46.8
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHH-----cCCCcccEEEEEECCeEeeeecCCCHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKS-----EGVSSIPAFKIYKNGSRVKEIPGHQCELLE 705 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 705 (713)
+.+|++ |++|+.+.+++.++. +.+..+|++..+..... +++.++|++ ++.+|..+. ..+..+|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHH
Confidence 556776 999999999987653 45567888877766555 389999987 466775433 33445555
Q ss_pred HHHH
Q 005125 706 KSVK 709 (713)
Q Consensus 706 ~~~~ 709 (713)
+.|+
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 5543
No 376
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.87 E-value=0.78 Score=48.23 Aligned_cols=153 Identities=8% Similarity=-0.035 Sum_probs=100.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR- 332 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~- 332 (713)
.+|.|.++|+.+-..+..+ -+++....|++.+...|..+.+|.......+..++|+.-...|.++|..--+ .+.|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHH
Confidence 7899999999999988777 9999999999999999999999999999999999999999999999864322 444433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhh---hccccHHHHHHHHHHHHHHHH------HHHhhcHHHHHHHHHHHHHcCCCChH
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSSL---ANQKDIAKAEALHKHLTKCNE------ARELKRWNDLLKETQNVISFGADSAP 403 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~~---~~p~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~al~~~p~~~~ 403 (713)
|-.+-...|+...+....-+|... ..--+.........+..-... +.+..+.+.....|++++..--.+..
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 334444556655544444444330 111111111112222222222 22233445556778888877666666
Q ss_pred HHHHH
Q 005125 404 QVYAL 408 (713)
Q Consensus 404 ~~~~~ 408 (713)
.+|..
T Consensus 173 kLW~D 177 (656)
T KOG1914|consen 173 KLWKD 177 (656)
T ss_pred HHHHH
Confidence 66654
No 377
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.85 E-value=0.29 Score=49.51 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005125 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK 539 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 539 (713)
..|+..|.++.... +..+.. .+|.+|.. ..++.+|+.+|.++.+... ....+.++ ++..
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~------------~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~ 234 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQL------------LLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL 234 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHH------------HHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh
Confidence 57888888887766 444444 57777654 4589999999999998876 88888888 7776
Q ss_pred cC
Q 005125 540 LG 541 (713)
Q Consensus 540 ~g 541 (713)
.|
T Consensus 235 ~g 236 (292)
T COG0790 235 NG 236 (292)
T ss_pred cC
Confidence 66
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.85 E-value=0.098 Score=53.47 Aligned_cols=124 Identities=12% Similarity=0.027 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 005125 275 FEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR---LGEAEKAVSHYK 351 (713)
Q Consensus 275 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~ 351 (713)
.+.-+.+|++|++.+|++...+..+-.+.....+.++..+.+++++..+|++...|..+-..... .-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 56778999999999999999999988899999999999999999999999998888765544433 235778888888
Q ss_pred HHhhhhcccc-----------HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC
Q 005125 352 KSSSLANQKD-----------IAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG 398 (713)
Q Consensus 352 ~al~~~~p~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 398 (713)
+++..+.... ......+..++..+....+.|..+.|+..++..++++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8877211110 0122334444555555556666666666666665553
No 379
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0037 Score=65.86 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=75.3
Q ss_pred hHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE-
Q 005125 620 ERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR- 692 (713)
Q Consensus 620 ~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~- 692 (713)
..|...+ ......++.|++ |++|+.+.|.+++++..+ ..+.+..+|++..+.++..++|...||+.+|+.|..
T Consensus 152 ~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~ 231 (383)
T KOG0191|consen 152 DNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEED 231 (383)
T ss_pred cchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcc
Confidence 3444433 445667777777 999999999999998765 568999999998999999999999999999999888
Q ss_pred eeeecCC-CHHHHHHHHHhh
Q 005125 693 VKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~~~~ 711 (713)
.....|. +.+.|..|+...
T Consensus 232 ~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 232 IYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred cccccccccHHHHHHHHHhh
Confidence 5556666 999999999765
No 380
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.82 E-value=0.054 Score=44.42 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=68.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-------c
Q 005125 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKE----VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE-------H 522 (713)
Q Consensus 454 g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~ 522 (713)
|.-.+..|-|++|...+++|+++...-+. -+... ...++-.|+.++..+|+|++++..-.+++. +
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GF----DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGF----DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHH----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccH----HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 44556678999999999999987543321 11111 122333688899999999999888887774 4
Q ss_pred CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 523 EAYNSV----LLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 523 ~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+.+... +-+++|..+..+|+.++|+..|+.+-++
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 555433 4568899999999999999999998765
No 381
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.80 E-value=0.17 Score=54.21 Aligned_cols=224 Identities=16% Similarity=0.105 Sum_probs=134.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHcCCH
Q 005125 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAH----------HRLAMLYFRLGEA 343 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~ 343 (713)
..++|+++ ++.+| ++..|..+|......-.++-|...|-+.-.. +. .... ...|.+-..-|++
T Consensus 678 gledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~f 750 (1189)
T KOG2041|consen 678 GLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEF 750 (1189)
T ss_pred chHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcch
Confidence 34555554 34455 4789999999888877777777777665321 11 1112 2334445556889
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHccCHHHH
Q 005125 344 EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA-DSAPQVYALQAEALLRLQRHQEA 422 (713)
Q Consensus 344 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~la~~~~~~g~~~~A 422 (713)
++|...|-.+-+ .+ ........+|+|-...+.++..-.-.. .....++..+|..+..+..|++|
T Consensus 751 eeaek~yld~dr----rD-----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 751 EEAEKLYLDADR----RD-----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hHhhhhhhccch----hh-----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888865433 11 112344567788777666554221111 11237889999999999999999
Q ss_pred HHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005125 423 HDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL 502 (713)
Q Consensus 423 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~ 502 (713)
.++|.+.-.. -++..+|+...+|++-..+ ...-|++.+.+. .+|..
T Consensus 816 ~~yY~~~~~~------------------e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp------------~~a~m 861 (1189)
T KOG2041|consen 816 AKYYSYCGDT------------------ENQIECLYRLELFGELEVL----ARTLPEDSELLP------------VMADM 861 (1189)
T ss_pred HHHHHhccch------------------HhHHHHHHHHHhhhhHHHH----HHhcCcccchHH------------HHHHH
Confidence 9999876432 2246777777777764433 334566666655 35666
Q ss_pred HHHcccHHHHHHHHHH-------------------HhccC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 503 LFKASKYKEACYAYSE-------------------GLEHE-----AYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553 (713)
Q Consensus 503 ~~~~g~~~~A~~~~~~-------------------al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 553 (713)
+...|.-++|+++|-+ |+++. |.-.......+.-+...++.-+|++.++++
T Consensus 862 f~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 862 FTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 6666666666665533 22221 111222223344556777788888877776
No 382
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.78 E-value=0.49 Score=47.85 Aligned_cols=184 Identities=15% Similarity=0.098 Sum_probs=119.8
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----c
Q 005125 269 AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGL----GRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR----L 340 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 340 (713)
....+++..|+..+..+-.. .+......++.+|..- .+..+|+.+|+.+ ....++.+.+.||.+|.. .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcc
Confidence 34567788888888887662 2336777778777653 4678888888844 445667888889988887 4
Q ss_pred CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc----
Q 005125 341 GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL---- 416 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~---- 416 (713)
.++.+|..+|+++.. ...... ......+|.+|..-
T Consensus 127 ~d~~~A~~~~~~Aa~-~g~~~a----------------------------------------~~~~~~l~~~~~~g~~~~ 165 (292)
T COG0790 127 LDLVKALKYYEKAAK-LGNVEA----------------------------------------ALAMYRLGLAYLSGLQAL 165 (292)
T ss_pred cCHHHHHHHHHHHHH-cCChhH----------------------------------------HHHHHHHHHHHHcChhhh
Confidence 488888888888877 322210 01233333333332
Q ss_pred -c--CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 417 -Q--RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA----AGRFEDAVKTAQDAAQIDPNNKEVIKGVKM 489 (713)
Q Consensus 417 -g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 489 (713)
- +...|+..|.++-... .+.+.+.+|.+|.. ..++.+|..+|.++.+... .....
T Consensus 166 ~~~~~~~~A~~~~~~aa~~~------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~---- 227 (292)
T COG0790 166 AVAYDDKKALYLYRKAAELG------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACY---- 227 (292)
T ss_pred cccHHHHhHHHHHHHHHHhc------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHH----
Confidence 1 2246777777765433 35577888888865 4589999999999998776 44444
Q ss_pred HHHHHHHHHHHHHHHHcc---------------cHHHHHHHHHHHhccCC
Q 005125 490 AKAMASARLRGNLLFKAS---------------KYKEACYAYSEGLEHEA 524 (713)
Q Consensus 490 ~~~~~~~~~lg~~~~~~g---------------~~~~A~~~~~~al~~~p 524 (713)
.++ +++..| +...|...+..+....+
T Consensus 228 --------~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 228 --------NLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred --------HHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 466 666555 55555555555554443
No 383
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.77 E-value=0.0014 Score=42.23 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 530 LCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 530 ~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
|.+||.+|..+|++++|+.+|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666777777777666665443
No 384
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.77 E-value=0.0038 Score=53.27 Aligned_cols=90 Identities=13% Similarity=0.231 Sum_probs=55.4
Q ss_pred cccccceeecc-hhHHHHHhhcCCceEEEeec--CchhHHHHHHHH---HHHHhC-CCcEEEEEeCCCcH-hhHHHcCCC
Q 005125 608 KFGSNLVFVSS-NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLME---QVCKRF-PSVNFLKVEVEDHP-YIAKSEGVS 679 (713)
Q Consensus 608 ~~g~~i~~~~~-~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~---~l~~~~-p~~~~~~v~~d~~~-~~~~~~~v~ 679 (713)
|||+.+....+ .+.....-....+.++.|++ |++|+.+...+- .+.+.. .+.+.+.++.|.-. ... ..+ .
T Consensus 1 g~~~~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~ 78 (130)
T cd02960 1 GWGDDIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-Q 78 (130)
T ss_pred CCcccccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-c
Confidence 56776666532 33334444556777777888 999999987542 122221 13455566655221 111 133 5
Q ss_pred cccEEEEEE-CCeEeeeecCC
Q 005125 680 SIPAFKIYK-NGSRVKEIPGH 699 (713)
Q Consensus 680 ~~Pt~~~~~-~g~~~~~~~g~ 699 (713)
.+||++|+. +|+.+.+++|.
T Consensus 79 ~vPtivFld~~g~vi~~i~Gy 99 (130)
T cd02960 79 YVPRIMFVDPSLTVRADITGR 99 (130)
T ss_pred ccCeEEEECCCCCCccccccc
Confidence 799999994 78999999997
No 385
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.75 E-value=0.011 Score=47.03 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=53.6
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH----hhHHHcC--CCcccEEEEEECCeEeeeecCCCHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP----YIAKSEG--VSSIPAFKIYKNGSRVKEIPGHQCEL 703 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~ 703 (713)
.+++|+. |+.|..+.++|+++...+.++.+..+|++..+ ++....+ +.++|++ |.+|+.++ |. +.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~i--fi~g~~ig---g~--~~ 74 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQI--FVDQKHIG---GC--TD 74 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEE--EECCEEEc---CH--HH
Confidence 4666776 99999999999999987667889999988643 4544444 5789984 57887643 44 66
Q ss_pred HHHHHHhh
Q 005125 704 LEKSVKLY 711 (713)
Q Consensus 704 ~~~~~~~~ 711 (713)
|.++++.+
T Consensus 75 ~~~~~~~~ 82 (85)
T PRK11200 75 FEAYVKEN 82 (85)
T ss_pred HHHHHHHh
Confidence 77776654
No 386
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.22 Score=52.24 Aligned_cols=63 Identities=19% Similarity=0.108 Sum_probs=53.6
Q ss_pred HHHHHHHHcccHHHHHHHHHHHhcc---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 005125 498 LRGNLLFKASKYKEACYAYSEGLEH---EAY----NSVLLCNRAACRSKLGQ-YEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 498 ~lg~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 560 (713)
-+|.++..+|+-..|..+|..+++. ... .|.+++.+|..|..+|. ..+|.+++.+|-+...++
T Consensus 454 L~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 454 LKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 5899999999999999999988843 111 27889999999999999 999999999998877554
No 387
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.73 E-value=0.067 Score=50.61 Aligned_cols=200 Identities=11% Similarity=0.111 Sum_probs=120.0
Q ss_pred hcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHcC
Q 005125 272 KARFEDALALYDRAIAINSSKA----TYRSNKSAALIGLGRQIEALVECKEAIRI-----DPCY-HRAHHRLAMLYFRLG 341 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~la~~~~~~g 341 (713)
..+.++|+.-|++++++.+... .++-.+..+++++++|++-+..|.+.+.. ..++ ......+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4588999999999999988754 46777888999999999999999988753 1122 112222222112223
Q ss_pred CHHHHHHHHHHHhhhh-ccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC-----------ChHHHHHHH
Q 005125 342 EAEKAVSHYKKSSSLA-NQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD-----------SAPQVYALQ 409 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----------~~~~~~~~l 409 (713)
+.+--.++|+..+..+ +..+ ....+.....++..+...+.|.+..+.+++.-+.... ...++|..-
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKN--eRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKN--ERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhc--ceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 3333333444333310 1111 1112233456677777777777666555554332211 112566666
Q ss_pred HHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 410 AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
...|....+-..-...|++++.+....+..++ -..+.-.-|..+...|+|++|-..|-+|.+..
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI----mGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLI----MGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHH----HhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 77888888888888889988766433211110 01122223566788899999999998888754
No 388
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.72 E-value=0.0052 Score=63.27 Aligned_cols=108 Identities=27% Similarity=0.315 Sum_probs=95.6
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGL---GRQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
.-|.+.+.++.-|+-.+..+....|+..|.+++...|.....+.+++.++++. |+.-.|+..+..|+.++|....+|
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 34566677888888888888999999999999999999999999999999875 677889999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+.|+.++..++++.+|+++...+.. ..|.+.
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~-~~Ptd~ 479 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQM-SFPTDV 479 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhh-cCchhh
Confidence 9999999999999999998887776 777653
No 389
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.72 E-value=0.015 Score=47.45 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=76.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 005125 265 MGNEAYNKARFEDALALYDRAIAINSSKA---TYRSNKSAALIGLGR-----------QIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 265 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 330 (713)
+|..++..|++-+|+++.+..+...+++. ..+...|.++..+.. .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57788999999999999999999988765 556667887765532 3568999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+.+|.-+.....|++++.-.++++.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 9999888777788888888888877
No 390
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.68 E-value=0.17 Score=49.04 Aligned_cols=80 Identities=13% Similarity=0.267 Sum_probs=59.3
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-----------HhhHHHcCCCcccEEEEEE-CCeEee-e
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-----------PYIAKSEGVSSIPAFKIYK-NGSRVK-E 695 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-----------~~~~~~~~v~~~Pt~~~~~-~g~~~~-~ 695 (713)
..+++|+. |+.|.++.|++..++++|+ +.++.|++|-. ..++..+||..+|++.+.. ++..+. -
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv 230 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPL 230 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEE
Confidence 44555555 9999999999999999985 77777777754 3478899999999876665 433333 3
Q ss_pred ecCC-CHHHHHHHHHhh
Q 005125 696 IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~ 711 (713)
-.|. +.++|.+.|...
T Consensus 231 ~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 231 AYGFISQDELKERILNV 247 (256)
T ss_pred eeccCCHHHHHHHHHHH
Confidence 4466 889988877543
No 391
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=0.0019 Score=67.39 Aligned_cols=80 Identities=14% Similarity=0.266 Sum_probs=61.5
Q ss_pred cccceeecchhHHHHHhhcCC-ceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCC--CcHhhHHHcCCCc
Q 005125 610 GSNLVFVSSNERFRHFVTSPG-MAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVE--DHPYIAKSEGVSS 680 (713)
Q Consensus 610 g~~i~~~~~~~~~~~~l~~~~-~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d--~~~~~~~~~~v~~ 680 (713)
++.+..+ +.+.|...+.... ..+|.|++ ||+|+.+.|.|+++++.. |-+.+..||+. .+..++..++|..
T Consensus 38 ~D~ii~L-d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 38 DDPIIEL-DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCCeEEe-ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 3444444 4567887775554 67777888 999999999999998664 44677777765 4668999999999
Q ss_pred ccEEEEEECC
Q 005125 681 IPAFKIYKNG 690 (713)
Q Consensus 681 ~Pt~~~~~~g 690 (713)
.|++.+|.-+
T Consensus 117 ~Ptlryf~~~ 126 (606)
T KOG1731|consen 117 YPTLRYFPPD 126 (606)
T ss_pred CceeeecCCc
Confidence 9999999743
No 392
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.65 E-value=0.075 Score=54.30 Aligned_cols=153 Identities=12% Similarity=-0.035 Sum_probs=107.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 280 ALYDRAIAINSSKATYRSNKSAALIGLGR------------QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAV 347 (713)
Q Consensus 280 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 347 (713)
.-|++.++.+|.+..+|..+....-..-. .+.-+..|++||+.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45777888889998888888776554432 456788999999999999999999888999999999999
Q ss_pred HHHHHHhhhhccccHHHHHHHHHHHHH----HHHHHHhhcHHHHHHHHHHHHHcC---CC-------ChHHHHHHHHHHH
Q 005125 348 SHYKKSSSLANQKDIAKAEALHKHLTK----CNEARELKRWNDLLKETQNVISFG---AD-------SAPQVYALQAEAL 413 (713)
Q Consensus 348 ~~~~~al~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~A~~~~~~al~~~---p~-------~~~~~~~~la~~~ 413 (713)
.-+++++. ..|.+...+..+..+... .....-...|.+++..+....... .. ....++..+....
T Consensus 86 ~~we~~l~-~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLF-KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHH-HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 99999999 999887655544333222 112222334444444444333322 00 1124555667777
Q ss_pred HHccCHHHHHHHhhccccCC
Q 005125 414 LRLQRHQEAHDSYNKSPKFC 433 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~ 433 (713)
...|..+.|+..++..++++
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 88999999999999887754
No 393
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.64 E-value=0.01 Score=52.29 Aligned_cols=67 Identities=10% Similarity=0.266 Sum_probs=48.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC---------CCcEEEEEeCCCcH-------------------------hh
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF---------PSVNFLKVEVEDHP-------------------------YI 672 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---------p~~~~~~v~~d~~~-------------------------~~ 672 (713)
.+.+++.|++ |++|+...|.+.++.+++ .++.++.|+.|+.. .+
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l 104 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRREL 104 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHH
Confidence 3566777999 999999999999876533 14777777776421 35
Q ss_pred HHHcCCCcccEEEEEE-CCeEeee
Q 005125 673 AKSEGVSSIPAFKIYK-NGSRVKE 695 (713)
Q Consensus 673 ~~~~~v~~~Pt~~~~~-~g~~~~~ 695 (713)
+..|+|.++|+.+++. +|+.+..
T Consensus 105 ~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 105 EAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHcCCCCCCEEEEECCCCcEEee
Confidence 6677899999988876 5666543
No 394
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.63 E-value=0.76 Score=45.95 Aligned_cols=203 Identities=12% Similarity=0.022 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHh----CCC---C-------HHHHHHHHHHHHHcCCHH---HHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKA-RFEDALALYDRAIAI----NSS---K-------ATYRSNKSAALIGLGRQI---EALVECKEAIR 321 (713)
Q Consensus 260 ~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~p~---~-------~~~~~~la~~~~~~g~~~---~A~~~~~~al~ 321 (713)
..+++.|...+..+ ++++|+.++++++++ .+. . ..++..++.+|...+.++ +|....+.+-.
T Consensus 36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~ 115 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES 115 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 46899999999999 999999999999987 221 1 346788899999887764 34445555555
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc-cccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN-QKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD 400 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 400 (713)
..|+.+..+...-.++...++.+++.+.+.+++...+ ++.. +...+.....+.. .....+...+...+.....
T Consensus 116 e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~-----~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~ 189 (278)
T PF08631_consen 116 EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESN-----FDSILHHIKQLAE-KSPELAAFCLDYLLLNRFK 189 (278)
T ss_pred hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccch-----HHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhC
Confidence 6788777776666666668999999999999988333 2221 1111111111111 2234455555555433211
Q ss_pred ChHHHHHHH---HHHHHHcc--C------HHHHHHHhhcc-----ccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHH
Q 005125 401 SAPQVYALQ---AEALLRLQ--R------HQEAHDSYNKS-----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFE 464 (713)
Q Consensus 401 ~~~~~~~~l---a~~~~~~g--~------~~~A~~~~~~a-----l~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 464 (713)
.....+... -.++...+ + .+.....+... -.+.+..... .-.++-+.|...++.++|+
T Consensus 190 ~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a------~~~LLW~~~~~~~~~k~y~ 263 (278)
T PF08631_consen 190 SSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASA------IHTLLWNKGKKHYKAKNYD 263 (278)
T ss_pred CChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHH------HHHHHHHHHHHHHhhcCHH
Confidence 111101111 11122111 1 22222222211 1112211111 1234556788999999999
Q ss_pred HHHHHHHHHH
Q 005125 465 DAVKTAQDAA 474 (713)
Q Consensus 465 ~A~~~~~~al 474 (713)
+|+.+|+-++
T Consensus 264 ~A~~w~~~al 273 (278)
T PF08631_consen 264 EAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHH
Confidence 9999999776
No 395
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.58 E-value=0.0096 Score=43.98 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=46.9
Q ss_pred EEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHH---HcCCCcccEEEEEECC
Q 005125 634 VLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK---SEGVSSIPAFKIYKNG 690 (713)
Q Consensus 634 v~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~---~~~v~~~Pt~~~~~~g 690 (713)
++|+. |+.|..+.+.+.++....+++.+..++++..+.... .+++..+|+++++..|
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred EEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 34555 999999999999884445789999999998877655 7889999999998876
No 396
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.58 E-value=0.0043 Score=38.86 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+++.+|.++.++|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5667777777777777777777777777765
No 397
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.58 E-value=0.0046 Score=38.74 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSS 291 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 291 (713)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666554
No 398
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.56 E-value=1.1 Score=45.92 Aligned_cols=73 Identities=3% Similarity=-0.143 Sum_probs=47.8
Q ss_pred hhHhh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 249 QCISS--LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 249 ~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
++.++ .+|.+.-.|+.+-..+-.+|.+++-.+.|++...-.|-...+|...-.--...+++..-...|-+++.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 44444 67777778888888888888888888888887777776655554443333344555555555555554
No 399
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.54 E-value=0.012 Score=48.02 Aligned_cols=59 Identities=19% Similarity=0.410 Sum_probs=44.8
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcH-------------------------hhHHHcCCCc
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHP-------------------------YIAKSEGVSS 680 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~-------------------------~~~~~~~v~~ 680 (713)
.+++.|++ |++|+...|.+.++.++++ ++.++.|..|+.. .+...++|..
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~ 82 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGING 82 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TS
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCc
Confidence 46777888 9999999999999999987 7888888877631 3555668888
Q ss_pred ccEEEEEEC
Q 005125 681 IPAFKIYKN 689 (713)
Q Consensus 681 ~Pt~~~~~~ 689 (713)
+|+++++..
T Consensus 83 iP~~~lld~ 91 (95)
T PF13905_consen 83 IPTLVLLDP 91 (95)
T ss_dssp SSEEEEEET
T ss_pred CCEEEEECC
Confidence 998887764
No 400
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=1.4 Score=54.66 Aligned_cols=283 Identities=13% Similarity=0.100 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHc
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM-LYFRL 340 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~ 340 (713)
+...-......|++..|..+|++++..+|+....+...-......|.+...+...+-.....++...-|+.++. +-.+.
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 34444555668999999999999999999988777777778888888888888777666655555555555442 22344
Q ss_pred CCHHHHHHHHH-------------HH-hhhhccccHHHH-HHHHHHHHH----HHHHHHhhcHHHHHHHHHHH-------
Q 005125 341 GEAEKAVSHYK-------------KS-SSLANQKDIAKA-EALHKHLTK----CNEARELKRWNDLLKETQNV------- 394 (713)
Q Consensus 341 g~~~~A~~~~~-------------~a-l~~~~p~~~~~~-~~~~~~~~~----~~~~~~~~~~~~A~~~~~~a------- 394 (713)
++++.-..+.. ++ +. ....+.... ..+...... .......+-|..+.+..-+.
T Consensus 1532 ~qwD~~e~~l~~~n~e~w~~~~~g~~ll~-~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1532 SQWDLLESYLSDRNIEYWSVESIGKLLLR-NKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred cchhhhhhhhhcccccchhHHHHHHHHHh-hcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 44444333311 00 11 111111000 000000000 00000011222222211111
Q ss_pred ------HHcCCCCh----HHHHHHHHHHHHHccCHHHHHHHhhccc---cCChhhHHhhhcccCcHHHHHHHHHHHHHcC
Q 005125 395 ------ISFGADSA----PQVYALQAEALLRLQRHQEAHDSYNKSP---KFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG 461 (713)
Q Consensus 395 ------l~~~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 461 (713)
....++.. ..-|.++...-....+..+-+-.+++++ ...|+.. ...+..|...|.+....|
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~------~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLK------SRLGECWLQSARIARLAG 1684 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcccccc------chhHHHHHHHHHHHHhcc
Confidence 11111111 1223322222222222444444444442 2222221 145789999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CC----------C----
Q 005125 462 RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE-AY----------N---- 526 (713)
Q Consensus 462 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~----------~---- 526 (713)
+++.|..++-.|.+..+ +.+.. ..|..+...|+-..|+..+++.++.+ |+ .
T Consensus 1685 ~~q~A~nall~A~e~r~--~~i~~------------E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~ 1750 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESRL--PEIVL------------ERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLL 1750 (2382)
T ss_pred cHHHHHHHHHhhhhccc--chHHH------------HHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhh
Confidence 99999999999888763 34443 68999999999999999999999653 22 1
Q ss_pred --HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCChHHHH
Q 005125 527 --SVLLCNRAACRSKLGQY--EKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 527 --~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~ 565 (713)
..+...++......|++ ++-+.+|..+.++.|...+.++
T Consensus 1751 i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy 1793 (2382)
T KOG0890|consen 1751 IFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHY 1793 (2382)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCcee
Confidence 22344455555566664 3456889999999997666555
No 401
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.52 E-value=0.014 Score=44.67 Aligned_cols=66 Identities=18% Similarity=0.370 Sum_probs=46.6
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHc----CCCcccEEEEEECCeEeeeecCCCHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE----GVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~----~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 706 (713)
+++|+. |+.|..+..++.+. ++.+..++++..+.....+ ++..+|++.+ +| ..+.|.+++.|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHh
Confidence 345555 99999998887652 4667777887665544433 6889998764 45 4678888888887
Q ss_pred HH
Q 005125 707 SV 708 (713)
Q Consensus 707 ~~ 708 (713)
+|
T Consensus 72 ~~ 73 (73)
T cd02976 72 LL 73 (73)
T ss_pred hC
Confidence 64
No 402
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.50 E-value=0.021 Score=51.57 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=73.5
Q ss_pred cceeecchhHHHHHhhcCCc---eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEE
Q 005125 612 NLVFVSSNERFRHFVTSPGM---AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~~~---~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~ 686 (713)
.+..+.+...|.+.+..... .+|..+. ..-|..+...+.=+++.||.+.|.++.... -.....|....+|+++|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~-~gas~~F~~n~lP~Lli 217 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN-TGASDRFSLNVLPTLLI 217 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecc-ccchhhhcccCCceEEE
Confidence 45566788889888865422 2233555 568999999999999999999999998754 34556788899999999
Q ss_pred EECCeEeeeecC------C--CHHHHHHHHHhh
Q 005125 687 YKNGSRVKEIPG------H--QCELLEKSVKLY 711 (713)
Q Consensus 687 ~~~g~~~~~~~g------~--~~~~~~~~~~~~ 711 (713)
|++|+.++.++. . ..-.|+.||+.+
T Consensus 218 YkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 218 YKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred eeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999998876543 3 445666676655
No 403
>smart00594 UAS UAS domain.
Probab=96.49 E-value=0.03 Score=48.06 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=58.5
Q ss_pred hcCCceEEEeec--CchhHHHHHH-HHH--HHHhC-CCcEEEEEeCCC--cHhhHHHcCCCcccEEEEEE-CC-----eE
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQL-MEQ--VCKRF-PSVNFLKVEVED--HPYIAKSEGVSSIPAFKIYK-NG-----SR 692 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~-~~~--l~~~~-p~~~~~~v~~d~--~~~~~~~~~v~~~Pt~~~~~-~g-----~~ 692 (713)
...+..++.|.+ |++|..+.+- |.. +.+.. ...+++.+|++. ...++..+++.++|++.++. .| ..
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~ 104 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEW 104 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEE
Confidence 344566666777 9999998763 221 22222 257887888764 45789999999999998885 34 35
Q ss_pred eeeecCC-CHHHHHHHH
Q 005125 693 VKEIPGH-QCELLEKSV 708 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~ 708 (713)
+.++.|. ++++|...|
T Consensus 105 ~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 105 VGVVEGEISPEELMTFL 121 (122)
T ss_pred eccccCCCCHHHHHHhh
Confidence 7889999 999988776
No 404
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.48 E-value=0.01 Score=50.45 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=64.3
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCC-CcHhhHHHcC--CCcccEEEEEECCeEeeeecC--C-C
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVE-DHPYIAKSEG--VSSIPAFKIYKNGSRVKEIPG--H-Q 700 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g--~-~ 700 (713)
...++.|++ |+.|+.+.|.+.++.+.++ .+.++.+++. ..+.+...++ +..+|++.++.+|..+....+ . +
T Consensus 33 ~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 112 (127)
T COG0526 33 KPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVLP 112 (127)
T ss_pred ceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccCC
Confidence 344555556 9999999999999999987 4899999997 7899999999 999999999999887777766 3 5
Q ss_pred HHHHHHHHH
Q 005125 701 CELLEKSVK 709 (713)
Q Consensus 701 ~~~~~~~~~ 709 (713)
...+.....
T Consensus 113 ~~~~~~~~~ 121 (127)
T COG0526 113 KEALIDALG 121 (127)
T ss_pred HHHHHHHhc
Confidence 555555443
No 405
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.48 E-value=0.0093 Score=57.22 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
-...|....+.|+.++|..+|+.|+.++|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+..
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 455667778899999999999999999999999999999999999999999999999999999999998877653
No 406
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.48 E-value=0.052 Score=47.88 Aligned_cols=85 Identities=21% Similarity=0.112 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
..+..+..+....++.+++..++...--+.|..+..-..-|.++...|+|.+|+..++.+..-.|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 35777888888899999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred cCCHH
Q 005125 340 LGEAE 344 (713)
Q Consensus 340 ~g~~~ 344 (713)
+|+.+
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 98865
No 407
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.47 E-value=0.24 Score=47.04 Aligned_cols=226 Identities=11% Similarity=0.141 Sum_probs=132.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc----ccHHHHHHHHHHHHHHHH
Q 005125 306 LGRQIEALVECKEAIRIDPCY----HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQ----KDIAKAEALHKHLTKCNE 377 (713)
Q Consensus 306 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p----~~~~~~~~~~~~~~~~~~ 377 (713)
..+.++|+..|++++++.+.. ..++-.+..+++++++|++-.+.|.+.+..+.. +.... .+...+.....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDyiSt 117 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDYIST 117 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHHHhh
Confidence 348999999999999998876 457888889999999999999999998772211 11100 01111111111
Q ss_pred HHHhhcHHHHHHHHHHHHHcCCCChHHHH----HHHHHHHHHccCHHHHHHHhhccccCChhhH--HhhhcccCcHHHHH
Q 005125 378 ARELKRWNDLLKETQNVISFGADSAPQVY----ALQAEALLRLQRHQEAHDSYNKSPKFCLEYY--TKLFGLAGGAYLLI 451 (713)
Q Consensus 378 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~ 451 (713)
-..++-.++-.+..-.+++-..+. .+| ..+|.+|+..++|.+-...+++.-..+.... +..-....-.++|.
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcc--eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 111222222111122222222221 222 3579999999988887777766533221110 00000011234455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-----CC
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA-----YN 526 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~ 526 (713)
.--..|-.+.+-.+-...|++++.+...-+..+. ++.++. --|....+.|+|++|-..|=+|.+... ..
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRE-----CGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR 269 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRE-----CGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR 269 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHH-----cCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence 5566777888888888899999987665544432 111111 246778889999999998888887533 22
Q ss_pred HH--HHHHHHHHHHHcC
Q 005125 527 SV--LLCNRAACRSKLG 541 (713)
Q Consensus 527 ~~--~~~~la~~~~~~g 541 (713)
.. -|.-||..+++.|
T Consensus 270 ttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 270 TTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 22 3556677777665
No 408
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.46 E-value=0.033 Score=53.63 Aligned_cols=68 Identities=19% Similarity=0.153 Sum_probs=63.6
Q ss_pred HHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 498 LRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 498 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+.+.-..+.|+.++|...|+.|+.++|++++++..+|.......+.-+|-.+|-+|+.++|.+.+++.
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 45566678999999999999999999999999999999999999999999999999999999999887
No 409
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.38 E-value=0.0072 Score=38.82 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=10.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKK 352 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~ 352 (713)
|..||.+|..+|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
No 410
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.37 E-value=0.43 Score=48.80 Aligned_cols=242 Identities=13% Similarity=0.086 Sum_probs=150.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 005125 280 ALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQ 359 (713)
Q Consensus 280 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p 359 (713)
-.|++++...|-.++.|+....-+...++-+.|+...++++...|. ....++.+|...++-+.-..+|+++.+.+.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~- 364 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK- 364 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH-
Confidence 4577888888888899998888888899999999998888877765 677888888888888888888888776111
Q ss_pred ccHHHHHHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhh
Q 005125 360 KDIAKAEALHKHLTKCNEARE---LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEY 436 (713)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 436 (713)
..+..+..-.. -++++..-+.+-+-+. ...-+|+..-....+..-.+.|...|-++-+..--.
T Consensus 365 ----------r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~ 430 (660)
T COG5107 365 ----------RKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG 430 (660)
T ss_pred ----------HHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC
Confidence 11111111111 1112111111100000 111344444444445555677777777765432100
Q ss_pred HHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q 005125 437 YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAY 516 (713)
Q Consensus 437 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 516 (713)
.+.+++.. -.-|...|++.-|...|+-.+...|+.+.... ..-..+...++-+.|...|
T Consensus 431 --------h~vyi~~A-~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~------------kyl~fLi~inde~naraLF 489 (660)
T COG5107 431 --------HHVYIYCA-FIEYYATGDRATAYNIFELGLLKFPDSTLYKE------------KYLLFLIRINDEENARALF 489 (660)
T ss_pred --------cceeeeHH-HHHHHhcCCcchHHHHHHHHHHhCCCchHHHH------------HHHHHHHHhCcHHHHHHHH
Confidence 11122221 12345688999999999999998888876554 2344566788888899999
Q ss_pred HHHhccCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 517 SEGLEHEAYN--SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 517 ~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+++++.-... ...|-.+-..-..-|+...++..-++..++.|..
T Consensus 490 etsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 490 ETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 9887653322 3455555555566777777777777777777764
No 411
>PRK10941 hypothetical protein; Provisional
Probab=96.36 E-value=0.02 Score=56.09 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=65.1
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 497 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.++-.++.+.++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 378889999999999999999999999999999999999999999999999999999999999887655
No 412
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.36 E-value=0.013 Score=49.21 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=49.9
Q ss_pred CceEEEeec---------CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHh-------hHH--HcCCCcccEEEEEECC
Q 005125 630 GMAVVLFCS---------KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPY-------IAK--SEGVSSIPAFKIYKNG 690 (713)
Q Consensus 630 ~~~vv~f~~---------cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~-------~~~--~~~v~~~Pt~~~~~~g 690 (713)
...+++|++ |++|..+.|.+++.....| +..++.|.+..-+. ... .++|.++||++-|..+
T Consensus 20 ~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 20 KPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp SEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS
T ss_pred CeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCC
Confidence 455566664 9999999999999887765 58888888765442 222 4789999999999877
Q ss_pred eEeeeecCCCHHHHHHHHH
Q 005125 691 SRVKEIPGHQCELLEKSVK 709 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~ 709 (713)
+++.+-.-.+.+.|+.+++
T Consensus 100 ~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 100 ERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp -EEEHHHHH-HHHHHHHHH
T ss_pred CccchhhhccHHHHHHHhc
Confidence 5433322227777777765
No 413
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.34 E-value=0.16 Score=41.82 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-----------hHHHHHHHHHHHHHccCHHHHHHHhhcccc-------CC
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADS-----------APQVYALQAEALLRLQRHQEAHDSYNKSPK-------FC 433 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~ 433 (713)
+..+.....-|.|++|...+.+++.....- ....+..|+.++..+|+|++++..-++++. +.
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 444555666789999999999998764221 125667788999999999988777666653 44
Q ss_pred hhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 434 LEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476 (713)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 476 (713)
.+....|+ .+.+..+..+..+|+.++|+..|+.+-++
T Consensus 93 qdeGklWI------aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWI------AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHH------HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHH------HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44444443 36778899999999999999999988764
No 414
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.31 E-value=0.02 Score=40.17 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 295 YRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
.++.+|..+.++|+|++|..+++.+++++|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345555555555555555555555555555554443
No 415
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.31 E-value=0.026 Score=44.86 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=50.7
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH----hhHHHcC--CCcccEEEEEECCeEeeeecCCCHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP----YIAKSEG--VSSIPAFKIYKNGSRVKEIPGHQCELL 704 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 704 (713)
|++|.. |+.|..+..+++++...++++.+..+|++... .+....+ +.++|.+ |.+|+. +.|. +.|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~i--fi~g~~---igG~--~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQI--FVDEKH---VGGC--TDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeE--EECCEE---ecCH--HHH
Confidence 445555 99999999999998877777888888887432 4555555 3789975 567755 4454 666
Q ss_pred HHHHHhh
Q 005125 705 EKSVKLY 711 (713)
Q Consensus 705 ~~~~~~~ 711 (713)
.+++++.
T Consensus 75 ~~~~~~~ 81 (86)
T TIGR02183 75 EQLVKEN 81 (86)
T ss_pred HHHHHhc
Confidence 6666553
No 416
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.25 E-value=0.026 Score=48.85 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=52.8
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC-----C----------------------cHhhHHHcCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE-----D----------------------HPYIAKSEGV 678 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d-----~----------------------~~~~~~~~~v 678 (713)
..+++.|++ |++|....|.+.++.+++. ++.++-|..+ . ...+...+++
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v 103 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGN 103 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCC
Confidence 456777888 9999999999999999985 4677766541 1 1235556788
Q ss_pred CcccEEEEE-ECCeEeeeecCC
Q 005125 679 SSIPAFKIY-KNGSRVKEIPGH 699 (713)
Q Consensus 679 ~~~Pt~~~~-~~g~~~~~~~g~ 699 (713)
..+|++.++ ++|+.+....|.
T Consensus 104 ~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 104 QYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CcCCeEEEECCCCcEEEEEecC
Confidence 899999888 478888888774
No 417
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.22 E-value=0.021 Score=63.37 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=63.0
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
.+.+|.. |+.|..+...+.+++...|++..-.+|..++|+++..++|.++|+++ .||+.+ ..|. +.++|.+||
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~--i~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIV--VDDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEE--ECCEEE--EeeCCCHHHHHHhh
Confidence 4555656 99999999999999999999999999999999999999999999865 477765 3476 999999887
No 418
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.18 E-value=0.055 Score=43.25 Aligned_cols=75 Identities=31% Similarity=0.391 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 278 ALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY--HRAHHRLAMLYFRLGEAEKAVSHYKK 352 (713)
Q Consensus 278 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 352 (713)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..++++ ..+...+-.++..+|.-+.-...|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4567788888899999999999999999999999999999888887765 55666666666666664444444444
No 419
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.15 E-value=0.026 Score=39.64 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAA 302 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 302 (713)
+.++.+|..+++.|+|++|..+.+.+++.+|++..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4688999999999999999999999999999998876655443
No 420
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.11 E-value=0.023 Score=43.37 Aligned_cols=64 Identities=14% Similarity=0.339 Sum_probs=46.9
Q ss_pred Eeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHc---CCCcccEEEEEECCeEeeeecCCCHHHHHHH
Q 005125 635 LFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE---GVSSIPAFKIYKNGSRVKEIPGHQCELLEKS 707 (713)
Q Consensus 635 ~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 707 (713)
+|.. |+.|..+..+|++. ++.|-.+|+++.+.....+ |..++|++ +.+|. ..+.|+++++|.++
T Consensus 3 ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v--~~~g~--~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVI--VADGD--LSWSGFRPDKLKAL 71 (72)
T ss_pred EEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEE--EECCC--cEEeccCHHHHHhc
Confidence 4444 99999999988742 4777788888777655554 78899975 44553 35788899998764
No 421
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.10 E-value=0.73 Score=44.46 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=57.3
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC--cH---------hhHHHcCCCcccEEEEEEC-C-eEeee
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED--HP---------YIAKSEGVSSIPAFKIYKN-G-SRVKE 695 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~--~~---------~~~~~~~v~~~Pt~~~~~~-g-~~~~~ 695 (713)
..+++|+. |+.|+++.|++..++++|+ +.++.|.+|- .| ..+..+||..+|++.+..- + +...-
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv 223 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPL 223 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEE
Confidence 44555555 9999999999999999984 6666666653 22 2566899999998777653 3 33344
Q ss_pred ecCC-CHHHHHHHHHhh
Q 005125 696 IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~ 711 (713)
-.|. +.++|.+.|...
T Consensus 224 ~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 224 SYGFITQDDLAKRFLNV 240 (248)
T ss_pred eeccCCHHHHHHHHHHH
Confidence 4577 889998877543
No 422
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.06 E-value=0.074 Score=43.52 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=74.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHhc
Q 005125 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKAS-----------KYKEACYAYSEGLE 521 (713)
Q Consensus 453 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~ 521 (713)
++..++..|++-+|++..+..+...+++...|... ...|.+++.+. -+-.|+++|.++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh---------~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~ 72 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLH---------RLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE 72 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHH---------HHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc
Confidence 36778899999999999999999999888665321 13555554433 24568899999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 522 HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 522 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+.|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus 73 Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 73 LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99999888888888777777788888888888765
No 423
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.02 E-value=0.049 Score=44.34 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=59.0
Q ss_pred ecchhHHHHHhhc--CCceEEE-eec-CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcH----hhHHHcCCCc-ccEEE
Q 005125 616 VSSNERFRHFVTS--PGMAVVL-FCS-KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHP----YIAKSEGVSS-IPAFK 685 (713)
Q Consensus 616 ~~~~~~~~~~l~~--~~~~vv~-f~~-cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~----~~~~~~~v~~-~Pt~~ 685 (713)
+.+.+++..++.. .++.+++ ... |+-..++...|++.....++ +.++.+|+-+.. .|++.+||.- -|-++
T Consensus 4 L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 4 LTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp --SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred cCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence 4566788887766 3343333 222 99999999999998887765 999999998876 5788899985 79999
Q ss_pred EEECCeEeeeecCC--CHHHH
Q 005125 686 IYKNGSRVKEIPGH--QCELL 704 (713)
Q Consensus 686 ~~~~g~~~~~~~g~--~~~~~ 704 (713)
++++|+.|..-.-. +.+.|
T Consensus 84 li~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 84 LIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEETTEEEEEEEGGG-SHHHH
T ss_pred EEECCEEEEECccccCCHHhc
Confidence 99999998654433 55554
No 424
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=2.2 Score=53.03 Aligned_cols=63 Identities=14% Similarity=-0.034 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
...|.+.|.+....|+++.|..+.-+|.+.. -+.++..+|..+...|+...|+..+++.++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 5567788999999999999999999998877 57899999999999999999999999999664
No 425
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.98 E-value=0.035 Score=43.50 Aligned_cols=73 Identities=19% Similarity=0.381 Sum_probs=54.8
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe----EeeeecCC-CHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS----RVKEIPGH-QCELLE 705 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~----~~~~~~g~-~~~~~~ 705 (713)
+++|.. |+.|..+...+..+....+ +.+-.||+++.+.+...|+. .+|. +..+|. ....+.+. +.+.|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPV--l~~~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPV--LHIDGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSE--EEETT-GGGCTSEEEESSB-HHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCE--EEEcCcccccccceeCCCCCHHHHH
Confidence 556666 9999999999999877655 89999999999999999985 7996 344551 12334444 999999
Q ss_pred HHHH
Q 005125 706 KSVK 709 (713)
Q Consensus 706 ~~~~ 709 (713)
+||+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9985
No 426
>PRK10941 hypothetical protein; Provisional
Probab=95.97 E-value=0.081 Score=51.94 Aligned_cols=74 Identities=12% Similarity=0.033 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
+.++-..|.+.++++.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|...++..++..|+++.+-.....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 44555667777777777777777777777777777777777777777777777777777777777666544433
No 427
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.5 Score=49.78 Aligned_cols=223 Identities=14% Similarity=0.046 Sum_probs=138.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSS--KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHH 331 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 331 (713)
..|.++-.++..+..+...|+.+.|+..++..+...-. ..-.++.+|.++.-+.+|..|-..+....+...-..-.|.
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~ 341 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYT 341 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHH
Confidence 78888888888899999999988889999888771111 1336678899999999999999999998877655444444
Q ss_pred HHH-HHHHH--------cCCHHHHHHHHHHHhhh------hccccHHHHHHHHHHHHHH----------------HHHHH
Q 005125 332 RLA-MLYFR--------LGEAEKAVSHYKKSSSL------ANQKDIAKAEALHKHLTKC----------------NEARE 380 (713)
Q Consensus 332 ~la-~~~~~--------~g~~~~A~~~~~~al~~------~~p~~~~~~~~~~~~~~~~----------------~~~~~ 380 (713)
.++ .||.. .|+-++|-.+++..... -.|-+....+....+.... ..+..
T Consensus 342 Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wng 421 (546)
T KOG3783|consen 342 YFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNG 421 (546)
T ss_pred HHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhh
Confidence 444 33332 23555554444433321 1222222222222222111 11111
Q ss_pred h--hcHHHHHHHHHHHHH---c-CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHH
Q 005125 381 L--KRWNDLLKETQNVIS---F-GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRA 454 (713)
Q Consensus 381 ~--~~~~~A~~~~~~al~---~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg 454 (713)
. ....+.. .++..+. . ++++..-.+..+|.++..+|+...|..+|...++...... ..+-..+.++|.+|
T Consensus 422 f~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~---~d~w~~PfA~YElA 497 (546)
T KOG3783|consen 422 FSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRT---EDLWAVPFALYELA 497 (546)
T ss_pred cccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc---cccccccHHHHHHH
Confidence 0 1111111 1111111 1 3444445677889999999999999999998875311111 11113578999999
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 005125 455 QVYIAAGR-FEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 455 ~~~~~~g~-~~~A~~~~~~al~~~p~~ 480 (713)
..|..++. ..++.+++.+|-+...++
T Consensus 498 ~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 498 LLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHhcccChHHHHHHHHHHHhhcccc
Confidence 99999999 999999999998876554
No 428
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.93 E-value=0.13 Score=44.56 Aligned_cols=99 Identities=12% Similarity=0.212 Sum_probs=69.2
Q ss_pred eeecchhHHHHHhhcCCceEEEeec----Cc--hhHHHHHHHHHHHHhC-CC-cEEEEEeCCCcHhhHHHcCCCc--ccE
Q 005125 614 VFVSSNERFRHFVTSPGMAVVLFCS----KA--EHKQVLQLMEQVCKRF-PS-VNFLKVEVEDHPYIAKSEGVSS--IPA 683 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~~~~~vv~f~~----cg--~c~~~~~~~~~l~~~~-p~-~~~~~v~~d~~~~~~~~~~v~~--~Pt 683 (713)
..+.+.+.+...=...+..++.|.. |. .-..+...+.++++.| +. +.|+++|.+..+.+.+.+||.. .|+
T Consensus 5 ~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~ 84 (130)
T cd02983 5 IELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPA 84 (130)
T ss_pred EEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCE
Confidence 3344433444322234555666654 32 2346778899999988 55 8999999999999999999954 999
Q ss_pred EEEEECCeEeee-ecCC-CHHHHHHHHHhhh
Q 005125 684 FKIYKNGSRVKE-IPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 684 ~~~~~~g~~~~~-~~g~-~~~~~~~~~~~~~ 712 (713)
+.++...+..-. ..|. +.+.|.+|++.+.
T Consensus 85 v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 85 MVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred EEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 998876432322 5577 9999999999874
No 429
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.89 E-value=0.036 Score=61.03 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=64.7
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEK 706 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 706 (713)
+..+.+|+. |+.|..+...+.+++...|.+.+-.+|..++|+++..++|.++|++. .+|+.+ +.|. +.++|.+
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~--i~~~~~--~~g~~~~~~~~~ 192 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVF--LNGEEF--GQGRMTLEEILA 192 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEE--ECCcEE--EecCCCHHHHHH
Confidence 445666777 99999999999999999899999999999999999999999999874 477644 4466 7778877
Q ss_pred HHHh
Q 005125 707 SVKL 710 (713)
Q Consensus 707 ~~~~ 710 (713)
.+.+
T Consensus 193 ~~~~ 196 (517)
T PRK15317 193 KLDT 196 (517)
T ss_pred HHhc
Confidence 7754
No 430
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.88 E-value=0.079 Score=41.44 Aligned_cols=69 Identities=13% Similarity=0.286 Sum_probs=50.8
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHH---HcCCCcccEEEEEECCeEeeeecCCCHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK---SEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 706 (713)
.+.+|.. |+.|..+..+|++. ++.|-.+|++..+..+. ..|..++|+++ .++ ..+.|+++++|.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~-----gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~--i~~---~~~~Gf~~~~l~~ 71 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESR-----GFDFEMINVDRVPEAAETLRAQGFRQLPVVI--AGD---LSWSGFRPDMINR 71 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCCCcCEEE--ECC---EEEecCCHHHHHH
Confidence 3566776 99999999888542 57888889887775433 34778999874 355 3577999999999
Q ss_pred HHHh
Q 005125 707 SVKL 710 (713)
Q Consensus 707 ~~~~ 710 (713)
++-.
T Consensus 72 ~~~~ 75 (81)
T PRK10329 72 LHPA 75 (81)
T ss_pred HHHh
Confidence 8754
No 431
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.88 E-value=0.02 Score=55.16 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=35.0
Q ss_pred eCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 665 EVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 665 ~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+++.+..+++.+||.++|+|+ |.+|+.+ +|+ +++.|.++|++.
T Consensus 187 ~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 187 DIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred hHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 344556788889999999988 7788764 898 899999999864
No 432
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.87 E-value=0.16 Score=44.85 Aligned_cols=85 Identities=20% Similarity=0.088 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH
Q 005125 448 YLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS 527 (713)
Q Consensus 448 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 527 (713)
..+..+..+-...++.+++...+...--+.|..++... .-|.++...|+|.+|+..|+.+.+..|..+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~------------~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDL------------FDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHH------------HHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 35666777778889999999999988889999998887 489999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHH
Q 005125 528 VLLCNRAACRSKLGQYE 544 (713)
Q Consensus 528 ~~~~~la~~~~~~g~~~ 544 (713)
.+--.++.|+..+|+.+
T Consensus 79 ~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 79 YAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHHHHcCChH
Confidence 99999999999999853
No 433
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.86 E-value=3.3 Score=44.50 Aligned_cols=365 Identities=9% Similarity=-0.046 Sum_probs=221.6
Q ss_pred CCCCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHH-HHhcC
Q 005125 201 HCPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEA-YNKAR 274 (713)
Q Consensus 201 ~~~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~-~~~g~ 274 (713)
+..++...+-..|...|..-|- ... . | .-.+..-.+.| +.+...+++ .-|...+.|...-... -..|+
T Consensus 56 ~~~~~~~~~r~~y~~fL~kyPl--~~g-y--W-~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d 129 (577)
T KOG1258|consen 56 DSIEDVDALREVYDIFLSKYPL--CYG-Y--W-KKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGD 129 (577)
T ss_pred CchhHHHHHHHHHHHHHhhCcc--HHH-H--H-HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCC
Confidence 3334444666778888877763 111 1 1 12455555555 567888887 5567777666544333 35688
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHH
Q 005125 275 FEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL------GEAEK 345 (713)
Q Consensus 275 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~ 345 (713)
.+.-...|++|+.....+ ...|-..-.....++++..-...|++.+++--....-++..=.-+... -..++
T Consensus 130 ~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~ 209 (577)
T KOG1258|consen 130 PETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDE 209 (577)
T ss_pred HHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHH
Confidence 888889999999876543 446666666667889999999999999987444333333222222221 12222
Q ss_pred HHHHHHHHhh-------------------h-hccccH--HHHHHHHHH-HHHHHHHHHhhcHHHHHHHHHHHHHc-----
Q 005125 346 AVSHYKKSSS-------------------L-ANQKDI--AKAEALHKH-LTKCNEARELKRWNDLLKETQNVISF----- 397 (713)
Q Consensus 346 A~~~~~~al~-------------------~-~~p~~~--~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~----- 397 (713)
+.+.-..... . .+|... .....+... ...-.++.....+.+.+..++..+..
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhv 289 (577)
T KOG1258|consen 210 LIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHV 289 (577)
T ss_pred HHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccccccc
Confidence 2221111110 0 000000 000000000 01111122223344444445555443
Q ss_pred CCCChH--HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 398 GADSAP--QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 398 ~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
.|-+.+ ..|......-...|+++...-.|++++--+..+ ...|...+......|+.+-|...+..+.+
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y----------~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY----------DEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh----------HHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 333333 344555666678999999999999997655443 34778888888888999999999988888
Q ss_pred hC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH---HHH
Q 005125 476 ID-PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE---DCT 551 (713)
Q Consensus 476 ~~-p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---~~~ 551 (713)
+. |..+.... .-+..-...|++..|...|++..+..|+...+-...+......|+.+.+.. ++.
T Consensus 360 i~~k~~~~i~L------------~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s 427 (577)
T KOG1258|consen 360 IHVKKTPIIHL------------LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYS 427 (577)
T ss_pred hcCCCCcHHHH------------HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHH
Confidence 65 44444443 356666778999999999999998889999998888889999999999884 333
Q ss_pred HHHHhCCCC--hH------HHH--------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 552 AALIVMPSY--SK------ARL--------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 552 ~al~~~p~~--~~------a~~--------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
....-.-+. .. +++ +.|...+.+++...|.+......+....
T Consensus 428 ~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 428 SIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 333221111 11 111 8888999999999999987766655443
No 434
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.85 E-value=0.029 Score=44.40 Aligned_cols=58 Identities=17% Similarity=0.431 Sum_probs=42.4
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH-----hhHHHcCCCcccEEEEEECCeEe
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP-----YIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
|++|+. |+.|..+.+++.++.-. +...++.++.+..+ .+....++.++|++ |.+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 355666 99999999999987622 34678888876543 36666789999986 6678654
No 435
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.81 E-value=0.015 Score=35.71 Aligned_cols=32 Identities=34% Similarity=0.420 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 528 VLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 528 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.++..+|.++..+|++++|+..++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667777777777777777777777776664
No 436
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.71 E-value=0.14 Score=46.12 Aligned_cols=100 Identities=21% Similarity=0.327 Sum_probs=68.8
Q ss_pred ccccccceeecchhHHHHHhhc--CCceEEE-eec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTS--PGMAVVL-FCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~--~~~~vv~-f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
..||.. ..|+ .++|...+.. .+..|++ .+. .+.|..+...|++++.+||.+.|+++....+ ...|.-..+
T Consensus 88 ~kfG~V-~~IS-g~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nl 162 (240)
T KOG3170|consen 88 AKFGEV-FPIS-GPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNL 162 (240)
T ss_pred hcccce-eecc-chHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCC
Confidence 457744 4443 3466554433 3444444 444 5799999999999999999999999987654 122334569
Q ss_pred cEEEEEECCeEeeeec------CC--CHHHHHHHHHhh
Q 005125 682 PAFKIYKNGSRVKEIP------GH--QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~------g~--~~~~~~~~~~~~ 711 (713)
||+++|..|.....+. |. +++.+..++-+.
T Consensus 163 PTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 163 PTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred CeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 9999999987766554 44 788888887554
No 437
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.64 E-value=0.09 Score=49.11 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=56.0
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC--------------------CcHhhHHHcCCCcccEEEE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE--------------------DHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d--------------------~~~~~~~~~~v~~~Pt~~~ 686 (713)
...+++.|++ |+.|+...|.+.++.+.+ ++.++-+..+ ....+...|+|..+|+..+
T Consensus 74 gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 74 GRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 3457777888 999999999999988765 3333333322 1235667889999997655
Q ss_pred E-ECCeEeeeecCCCHHHHHHHHHhh
Q 005125 687 Y-KNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 687 ~-~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+ ++|+.+..-.....+.++++++..
T Consensus 153 ID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 153 LDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred ECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 5 578777653323677888888754
No 438
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.58 E-value=0.019 Score=52.92 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=57.2
Q ss_pred HHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 501 NLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|...|++.++++|++.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456789999999999999999999999999999999999999999999999999999875
No 439
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.49 E-value=0.11 Score=49.20 Aligned_cols=74 Identities=20% Similarity=0.134 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC-----CCC
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG-----ADS 401 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~ 401 (713)
+..+..+|++|..+|+.+....++++|+. .|.+++... +.+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~----------------------------------~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALE----------------------------------FYEEAYENEDFPIEGMD 163 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHH----------------------------------HHHHHHHhCcCCCCCch
Confidence 45677788888888886665555555554 233333221 112
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHhhccccCCh
Q 005125 402 APQVYALQAEALLRLQRHQEAHDSYNKSPKFCL 434 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 434 (713)
...+.+.+|.++.+.|++++|+.+|.+++....
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 236778899999999999999999999887543
No 440
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.47 E-value=0.12 Score=43.25 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=65.8
Q ss_pred HHhhcCCceEEEeecCchhHHHHHHHHHHHHh---C-CCcEEEEEeCCCcHhhHHHcCCCc--ccEEEEEECCe-Eeee-
Q 005125 624 HFVTSPGMAVVLFCSKAEHKQVLQLMEQVCKR---F-PSVNFLKVEVEDHPYIAKSEGVSS--IPAFKIYKNGS-RVKE- 695 (713)
Q Consensus 624 ~~l~~~~~~vv~f~~cg~c~~~~~~~~~l~~~---~-p~~~~~~v~~d~~~~~~~~~~v~~--~Pt~~~~~~g~-~~~~- 695 (713)
.......+..++|+.-.....+...+..+++. + +.+.|+.+|.+....+.+.+|+.. +|++.+..... ..-.
T Consensus 11 ~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~ 90 (111)
T cd03072 11 ELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPD 90 (111)
T ss_pred HHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCC
Confidence 33333333444444555567888999999998 8 679999999999988999999997 89988887532 1222
Q ss_pred ecCC-CHHHHHHHHHhhh
Q 005125 696 IPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~~ 712 (713)
..+. +++.|.+|++++.
T Consensus 91 ~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 91 FEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred CccccCHHHHHHHHHHHh
Confidence 4456 8999999999874
No 441
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.47 E-value=0.23 Score=45.66 Aligned_cols=96 Identities=17% Similarity=0.057 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPC--YH----RAH 330 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~ 330 (713)
.++..+|..|.+.|++++|++.|.++.+..... .+.+..+..+....++|.....+..++-.+-.. +. ...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 578999999999999999999999988865432 567888899999999999999999998776322 22 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
..-|..+...++|.+|...|-.+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 4557777888999999999988766
No 442
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.44 E-value=0.069 Score=58.79 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=63.8
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEK 706 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 706 (713)
...+.+|.. |+.|..+...+.+++...|.+.+-.+|..++|+++..++|.++|++. .+|+.+ +.|. +.+++.+
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~--i~~~~~--~~g~~~~~~~~~ 193 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVF--LNGEEF--HNGRMDLAELLE 193 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEE--ECCcEE--EecCCCHHHHHH
Confidence 345666777 99999999999999999999999999999999999999999999875 477644 4566 7777776
Q ss_pred HHHh
Q 005125 707 SVKL 710 (713)
Q Consensus 707 ~~~~ 710 (713)
.+..
T Consensus 194 ~l~~ 197 (515)
T TIGR03140 194 KLEE 197 (515)
T ss_pred HHhh
Confidence 6653
No 443
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.42 E-value=0.24 Score=42.99 Aligned_cols=84 Identities=21% Similarity=0.052 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
.+..........++++++..++...--+.|+.+..-..-|.++...|+|.+|+..++...+-.+..+.+--.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 45556666667999999999999888899999999999999999999999999999999988888888888999999999
Q ss_pred CCHH
Q 005125 341 GEAE 344 (713)
Q Consensus 341 g~~~ 344 (713)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8865
No 444
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.41 E-value=0.026 Score=34.53 Aligned_cols=31 Identities=23% Similarity=0.542 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSS 291 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 291 (713)
+++.+|.++...+++++|+.+|+++++.+|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555566666666666666666666555543
No 445
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=95.40 E-value=0.22 Score=41.18 Aligned_cols=90 Identities=13% Similarity=0.187 Sum_probs=64.2
Q ss_pred hHHHHHhhcC-CceEEE-eec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 620 ERFRHFVTSP-GMAVVL-FCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 620 ~~~~~~l~~~-~~~vv~-f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
....+.+... ...+++ |.. -+.|.++..++.++++...+ .+++-||+++.+.+...+++...|+++||-+++-+.
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmk 91 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMK 91 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEE
Confidence 3444444333 333333 555 47899999999999987644 788999999999999999999999999887654322
Q ss_pred ---------eecCC--CHHHHHHHHH
Q 005125 695 ---------EIPGH--QCELLEKSVK 709 (713)
Q Consensus 695 ---------~~~g~--~~~~~~~~~~ 709 (713)
.+.++ +.+++.+.|+
T Consensus 92 iD~gtgdn~Kin~~~~~kq~~Idiie 117 (142)
T KOG3414|consen 92 IDLGTGDNNKINFAFEDKQEFIDIIE 117 (142)
T ss_pred EeeCCCCCceEEEEeccHHHHHHHHH
Confidence 34444 6666666664
No 446
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=95.36 E-value=0.11 Score=47.64 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=55.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEE------EEEeCCC-----------------------------cHh
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNF------LKVEVED-----------------------------HPY 671 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~------~~v~~d~-----------------------------~~~ 671 (713)
....++.|++ |++|+.-.|++..+.++. +.+ .-||.|+ ...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~ 136 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGA 136 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcC--CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcch
Confidence 4456666998 999999999999997642 223 3444443 123
Q ss_pred hHHHcCCCcccEE--EEEECCeEeeeecCC-CHHHHHHHHH
Q 005125 672 IAKSEGVSSIPAF--KIYKNGSRVKEIPGH-QCELLEKSVK 709 (713)
Q Consensus 672 ~~~~~~v~~~Pt~--~~~~~g~~~~~~~g~-~~~~~~~~~~ 709 (713)
++..++|..+|+. ++=++|+.+....|. +.+++++.+.
T Consensus 137 v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 137 VKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred HHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 4557788889755 333569999999999 8887776443
No 447
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.36 E-value=0.46 Score=43.64 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005125 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE 482 (713)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 482 (713)
...+..+|..|.+.|++++|+++|.++........ ...+.+..+-.+....+++.....+..++-..-... .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~-------~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~ 107 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG-------HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-G 107 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-c
Confidence 36788899999999999999999999877654322 346678888999999999999999999987653331 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 483 VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 483 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
-|....++.. ..|..++..++|.+|...|-.++.-.
T Consensus 108 d~~~~nrlk~-----~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 108 DWERRNRLKV-----YEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred hHHHHHHHHH-----HHHHHHHHhchHHHHHHHHHccCcCC
Confidence 1222112111 35777778899999999998877544
No 448
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.33 E-value=0.23 Score=39.63 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=21.5
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 514 YAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 514 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 33444444455555555555555555555555555555555444443
No 449
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=0.94 Score=40.28 Aligned_cols=139 Identities=15% Similarity=0.106 Sum_probs=75.4
Q ss_pred hcHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc
Q 005125 382 KRWNDLLKETQNVISFGADSAP-QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA 460 (713)
Q Consensus 382 ~~~~~A~~~~~~al~~~p~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 460 (713)
+.-++|+..|...-+.+-...| .+....+.+....|+-..|+..|..+-...+-... ..-.+...-+.++...
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~------~rd~ARlraa~lLvD~ 145 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI------GRDLARLRAAYLLVDN 145 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch------hhHHHHHHHHHHHhcc
Confidence 3445555555555444433332 44555677777778888888888776543331100 1112334446667777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005125 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRS 538 (713)
Q Consensus 461 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 538 (713)
|-|++-....+..- .+.++.-.. +.-.||...++.|++.+|...|..... +...+....+++.+.+
T Consensus 146 gsy~dV~srvepLa--~d~n~mR~s---------ArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 146 GSYDDVSSRVEPLA--GDGNPMRHS---------AREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred ccHHHHHHHhhhcc--CCCChhHHH---------HHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 77776555443321 112221111 111477777888888888888877665 4444555555555544
No 450
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=95.30 E-value=0.049 Score=42.84 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=45.1
Q ss_pred HHHhhcCCceEEEeec--CchhHHHHHHH---HHHHHh-CCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 623 RHFVTSPGMAVVLFCS--KAEHKQVLQLM---EQVCKR-FPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 623 ~~~l~~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~-~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
........+.++.|++ |+.|+.+...+ +.+.+. ..+.+++.||.+.........+ ..+|+++|+.
T Consensus 11 ~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 11 AEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 3344567788888888 99999998876 334331 2468999999987654333222 5699998863
No 451
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=3.2 Score=40.14 Aligned_cols=205 Identities=11% Similarity=0.048 Sum_probs=126.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Q 005125 263 KFMGNEAYNKARFEDALALYDRAIAINS--------SKATYRSNKSAALIGLGRQIEALVECKEAIRI-----DPCYHRA 329 (713)
Q Consensus 263 ~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 329 (713)
..+|+-....+++++|+..|.+.+.... ....+...++.+|...|++..--+.....-+. .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 6778888899999999999999987621 12457788999999999886554444333222 2222333
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHc----CC-CChH
Q 005125 330 HHRLAMLYF-RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF----GA-DSAP 403 (713)
Q Consensus 330 ~~~la~~~~-~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p-~~~~ 403 (713)
...|-.-+- ....++.-+..+...++ ..............-..+...+...|.|.+|+......+.. +. -+..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~ie-wA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIE-WADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 333332222 23456666777776666 22222222222333455667788899999999887766532 11 1112
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhcccc-----CChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPK-----FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 476 (713)
.++..-..+|....+..++...+..|-. .+|.. ..+.+-..-|..+....+|.-|..+|-++++-
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpq--------lqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQ--------LQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHH--------HHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 5666667788888777777766655422 12211 12223334467777888999999999998873
No 452
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.10 E-value=0.19 Score=47.69 Aligned_cols=101 Identities=12% Similarity=0.050 Sum_probs=66.7
Q ss_pred hhcHHHHHHHHHHHHHc------CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhc---ccCcHHHHH
Q 005125 381 LKRWNDLLKETQNVISF------GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFG---LAGGAYLLI 451 (713)
Q Consensus 381 ~~~~~~A~~~~~~al~~------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~~ 451 (713)
...+++|+..|.-|+-. .+...+.++..+|.+|...|+.+....++++|+.........-.. ......+++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34566676666655432 222234778888999999999766666655555443322211100 113467899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
.+|.++.+.|++++|+.+|.+++.......
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999998654443
No 453
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=95.08 E-value=0.045 Score=46.27 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=28.0
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKV 664 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v 664 (713)
...+++.|++ |++|+...|.++++.+.+ .++.++.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v 59 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA 59 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE
Confidence 3567777888 999999999999988776 34555555
No 454
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.00 E-value=0.13 Score=48.37 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=57.0
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC--------C---cHhhHHHcCC----------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE--------D---HPYIAKSEGV---------------- 678 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d--------~---~~~~~~~~~v---------------- 678 (713)
..+++.||+ |++|..-.|.+.++.+++. ++.++-|+++ . ...++..+++
T Consensus 40 kvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~ 119 (199)
T PTZ00056 40 KVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGENTH 119 (199)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCccC
Confidence 456666888 9999999999999998884 4788888753 1 2223333332
Q ss_pred --------------------Cccc----EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 679 --------------------SSIP----AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 679 --------------------~~~P----t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
..+| +|++=++|..+.+..|. +++.|++.|+..
T Consensus 120 ~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~l 177 (199)
T PTZ00056 120 ELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAEL 177 (199)
T ss_pred HHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 1122 44444689999999998 888888888765
No 455
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.98 E-value=8.1 Score=43.56 Aligned_cols=257 Identities=13% Similarity=0.012 Sum_probs=125.7
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 271 NKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHY 350 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 350 (713)
+.+++.+-+.++. ..|.+....+..+.+....|+.++|....+++.......+.....+-..+...|...... +.
T Consensus 111 ~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w 185 (644)
T PRK11619 111 RREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YL 185 (644)
T ss_pred HccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HH
Confidence 4566666665332 237777777888888888888888877777776655444555544444444444433322 22
Q ss_pred HHHhhhhccccHHHHHHHHHHHHH-----HHHHHHh-hcHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHccCHHHHH
Q 005125 351 KKSSSLANQKDIAKAEALHKHLTK-----CNEAREL-KRWNDLLKETQNVISFG-ADSAPQVYALQAEALLRLQRHQEAH 423 (713)
Q Consensus 351 ~~al~~~~p~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~~la~~~~~~g~~~~A~ 423 (713)
.++...+...+......+...+.. +...... .+...+ ...+... +.....-...++.......+.+.|.
T Consensus 186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~ 261 (644)
T PRK11619 186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTV----ETFARTTGPTDFTRQMAAVAFASVARQDAENAR 261 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHH----HHHhhccCCChhhHHHHHHHHHHHHHhCHHHHH
Confidence 222111222222111111111100 0000000 000101 1111111 1211122223344444556677788
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
..+.+......-... ....+...+|.-....+...+|...+..+..... +...+. ....+.
T Consensus 262 ~~~~~~~~~~~~~~~------~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e------------~r~r~A 322 (644)
T PRK11619 262 LMIPSLVRAQKLNED------QRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLE------------RRVRMA 322 (644)
T ss_pred HHHHHHHHhcCCCHH------HHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHH------------HHHHHH
Confidence 777754221110000 1222344445444444335677777776543322 222222 123344
Q ss_pred HHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 504 FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 504 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
...++++.+...+...-..........+.+|..+..+|+.++|...|+++..
T Consensus 323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4777887777777664433345567788888888888888888888888643
No 456
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.93 E-value=2.7 Score=41.44 Aligned_cols=92 Identities=20% Similarity=0.184 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh-------------h--cccCcHH
Q 005125 384 WNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL-------------F--GLAGGAY 448 (713)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------~--~~~~~~~ 448 (713)
..+-++....+++++|+.. .+|..++.- ..--..+|...+++|++......... . ......+
T Consensus 200 p~~RI~~A~~ALeIN~eCA-~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y 276 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNECA-TAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY 276 (556)
T ss_pred cHHHHHHHHHHHhcCchhh-hHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence 3444566667788887765 455554432 22335566777776665322211100 0 0001234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 478 (713)
+...++.|..++|+..+|++.++...+..|
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 445667777777777777777776665555
No 457
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.93 E-value=0.04 Score=50.94 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=28.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 305 GLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
..++.+.|.+.|.+++++.|+....|+++|....+.|+++.|...|++.++ ++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~-ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE-LDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc-CCccc
Confidence 344444455555555555555555555555555555555555555555555 44444
No 458
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.90 E-value=0.19 Score=58.30 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 005125 257 LDPEELKFMGNEAYNKARFEDALA------LYDRA-IAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI------- 322 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 322 (713)
..+......|......|.+.+|.+ ++... -.+.|.....+..++.++..++++++|+....++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 455667788888888899998888 44432 2347788889999999999999999999998887654
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 323 -DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 323 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
.|+....+.+++...+..+....|+..+.++.. +.- +...|+.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~-l~~-----------------------------------Ls~ge~h 1053 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALK-LKL-----------------------------------LSSGEDH 1053 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHH-hhc-----------------------------------cccCCCC
Confidence 345567888888888888888888888887766 111 0111111
Q ss_pred h--HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 402 A--PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474 (713)
Q Consensus 402 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 474 (713)
+ .....+++.++...++++.|+.+++.|++........ .....+..+..++..+..++++..|+...+...
T Consensus 1054 P~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~--~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1054 PPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP--KELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred CchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc--cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 1 2555677888888899999999999998744332110 001234455556666666666666665555444
No 459
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=94.82 E-value=0.19 Score=44.61 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=52.9
Q ss_pred CCceEEEeec---CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCc---------------------HhhHHHcCCC---
Q 005125 629 PGMAVVLFCS---KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDH---------------------PYIAKSEGVS--- 679 (713)
Q Consensus 629 ~~~~vv~f~~---cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~---------------------~~~~~~~~v~--- 679 (713)
.+..++.||+ |++|..-.|.+.++.+.+ .++.++.|..+.. ..+...+++.
T Consensus 28 gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 107 (146)
T PF08534_consen 28 GKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIME 107 (146)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEEC
T ss_pred CCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcccc
Confidence 3445666776 999999999999998774 4477766665543 2466677888
Q ss_pred ------cccEEEEE-ECCeEeeeecCC
Q 005125 680 ------SIPAFKIY-KNGSRVKEIPGH 699 (713)
Q Consensus 680 ------~~Pt~~~~-~~g~~~~~~~g~ 699 (713)
.+|+++++ ++|+.+....|.
T Consensus 108 ~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 108 DPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp CTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred ccccCCeecEEEEEECCCEEEEEEeCC
Confidence 99976555 579999988888
No 460
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=5 Score=39.89 Aligned_cols=172 Identities=18% Similarity=0.112 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID------P 478 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p 478 (713)
+-..+..+|...++|.+|+......+..-....++. .-.+++..-..+|+...+..+|...+..|-... |
T Consensus 130 Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~----lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpP 205 (411)
T KOG1463|consen 130 LEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI----LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPP 205 (411)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc----ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCH
Confidence 445578889999999999988877654322211111 124456666888999999999988887765432 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC---CCHH---HHHHHHHHHHHcCCHHHHHH--HH
Q 005125 479 NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA---YNSV---LLCNRAACRSKLGQYEKAVE--DC 550 (713)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~---~~~~la~~~~~~g~~~~A~~--~~ 550 (713)
.-..... ..-|.++....+|.-|..+|-+|++-.. ++.. .+-.+-.|-..++..++--. .-
T Consensus 206 qlQa~lD-----------LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~ 274 (411)
T KOG1463|consen 206 QLQATLD-----------LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSA 274 (411)
T ss_pred HHHHHHH-----------HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 1111111 1467777778999999999999987532 1222 33344455556666665443 34
Q ss_pred HHHHHhCCCChHHHH--------------HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 551 TAALIVMPSYSKARL--------------EAAIQDYEMLIREIPGNEEVGRALFE 591 (713)
Q Consensus 551 ~~al~~~p~~~~a~~--------------~~A~~~~~~al~~~p~~~~~~~~l~~ 591 (713)
+.+++....+.++.. +.|+..|..-+..||=-..-...|+.
T Consensus 275 K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd 329 (411)
T KOG1463|consen 275 KLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYD 329 (411)
T ss_pred HHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHH
Confidence 456665555555544 55555555555555433333333333
No 461
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=2.4 Score=45.14 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHccCHHHHHHHhhcc-----ccCChhhHHhhhc
Q 005125 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAP-QVYALQAEALLRLQRHQEAHDSYNKS-----PKFCLEYYTKLFG 442 (713)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a-----l~~~~~~~~~~~~ 442 (713)
.+.+.....+.+.|-|..|.+..+-.+.++|...| .+.+.+-...++..+|+=-++.++.. +...|+.
T Consensus 343 L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~------ 416 (665)
T KOG2422|consen 343 LALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF------ 416 (665)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc------
Confidence 34444455566789999999999999999998434 33333333344555555555554443 2223322
Q ss_pred ccCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 005125 443 LAGGAYLLIVRAQVYIAAGR---FEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 443 ~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~ 479 (713)
..-..+|..|..... -+.|...+.+|+.+.|.
T Consensus 417 -----~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 417 -----GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred -----hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 122345566665554 57788999999998885
No 462
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.69 E-value=1 Score=47.02 Aligned_cols=90 Identities=16% Similarity=0.005 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC-
Q 005125 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQ- 542 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~- 542 (713)
..-...|+.|+...+.+...|. +......+.+.+.+--..|.+++..+|+++++|..-|.-.+..+.
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~------------~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n 155 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWL------------SYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN 155 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHH------------HHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc
Confidence 3446778889988898888887 334444445558999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHhCCCChHHHH
Q 005125 543 YEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 543 ~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+.|...+.++|+.+|+.+..|.
T Consensus 156 i~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 156 IESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred hHHHHHHHHHHhhcCCCChHHHH
Confidence 99999999999999999998887
No 463
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=5.2 Score=39.78 Aligned_cols=284 Identities=12% Similarity=0.026 Sum_probs=168.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC--CC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAI--NSSK--------ATYRSNKSAALIGLGRQIEALVECKEAIRI---DP--CY 326 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p--~~ 326 (713)
....+.......++++++..|.+.+.. .|.+ ......++..|...|+..+-.......-.. -+ ..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 355666667777889999999998874 2221 346788999999999988766655544322 11 11
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHc----CC-C
Q 005125 327 HRAHHRLAMLYFR-LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF----GA-D 400 (713)
Q Consensus 327 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p-~ 400 (713)
......+-..+.. -+..+.-+..+..+++ ..............-..+...|...++|.+|+......+.. +. .
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIe-WA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIE-WAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 2222223222222 2344555666666666 22111111111222345567788899999999887766542 21 1
Q ss_pred ChHHHHHHHHHHHHHccCHHHHHHHhhccccCChh-hHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 005125 401 SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE-YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP- 478 (713)
Q Consensus 401 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 478 (713)
...+++..-..+|..+.+..+|...+..|-..... ++. +...+.+-..-|..+....+|.-|..+|-+|++-..
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp----PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP----PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC----HHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 12255566677888888888888877765221100 000 001233334457777778999999999999987322
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHH--HHHHHHHHHhccCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q 005125 479 --NNKEVIKGVKMAKAMASARLRGNLLFKASKYK--EACYAYSEGLEHEAYNSVLLCNRAACRS--KLGQYEKAVEDCTA 552 (713)
Q Consensus 479 --~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~ 552 (713)
++..+.. ++..+-.+-...+..+ .++-.-+.+++....+.++....|.++. .+.+|+.|+..|+.
T Consensus 242 ~~~~v~A~~---------sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 242 LDDDVKALT---------SLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred cCCcHHHHH---------HHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 2223332 2222333333444444 3444455677777778888888888875 35678999999988
Q ss_pred HHHhCCC
Q 005125 553 ALIVMPS 559 (713)
Q Consensus 553 al~~~p~ 559 (713)
-+..||-
T Consensus 313 eL~~D~i 319 (411)
T KOG1463|consen 313 ELAEDPI 319 (411)
T ss_pred HHhcChH
Confidence 8877763
No 464
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=0.14 Score=41.91 Aligned_cols=51 Identities=24% Similarity=0.504 Sum_probs=40.4
Q ss_pred CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHh-------hHHHcCC-CcccEEEEEEC
Q 005125 639 KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPY-------IAKSEGV-SSIPAFKIYKN 689 (713)
Q Consensus 639 cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~-------~~~~~~v-~~~Pt~~~~~~ 689 (713)
|++|.++.|++.+..+..| ++.|+.|++.+-|. +....++ ..+||++=|.+
T Consensus 45 CPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 45 CPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcC
Confidence 9999999999999888765 69999999887653 2333445 78999998874
No 465
>PLN02412 probable glutathione peroxidase
Probab=94.57 E-value=0.29 Score=44.62 Aligned_cols=82 Identities=9% Similarity=0.071 Sum_probs=56.8
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC--------CcHhh----HHHcC----------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE--------DHPYI----AKSEG---------------- 677 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d--------~~~~~----~~~~~---------------- 677 (713)
+.+++.|++ |+.|..-.|.|.++.++|. ++.++-|+.+ ....+ ...++
T Consensus 30 k~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~~~ 109 (167)
T PLN02412 30 KVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKNT 109 (167)
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCCCC
Confidence 455666877 9999988888999988874 4788888653 22122 11111
Q ss_pred ------------------CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 678 ------------------VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 ------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|...|+..++ ++|+.+.++.|. +++.|++.|+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~ 163 (167)
T PLN02412 110 APLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNL 163 (167)
T ss_pred CHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 2224655545 579999999999 889999988765
No 466
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.54 E-value=0.23 Score=38.66 Aligned_cols=67 Identities=16% Similarity=0.308 Sum_probs=44.2
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc---HhhHHHcCCCcccEEEEEECCeEeeeecCCCHHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH---PYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELL 704 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~---~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 704 (713)
...|++|.. |+.|..+..+|+.. ++.+..+|++.. ..+....|..++|.+ |.+|+. +.|+ ++|
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i--~i~g~~---igG~--~~l 74 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQV--FIGGKL---IGGS--DEL 74 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeE--EECCEE---EcCH--HHH
Confidence 445667776 99999999998743 355566676654 345445688999976 468865 3444 555
Q ss_pred HHHH
Q 005125 705 EKSV 708 (713)
Q Consensus 705 ~~~~ 708 (713)
.++|
T Consensus 75 ~~~l 78 (79)
T TIGR02190 75 EAYL 78 (79)
T ss_pred HHHh
Confidence 5443
No 467
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=94.52 E-value=0.52 Score=43.75 Aligned_cols=91 Identities=25% Similarity=0.470 Sum_probs=66.1
Q ss_pred hHHHHHhhcCCc-eEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCC--cccEEEEEE--CCe
Q 005125 620 ERFRHFVTSPGM-AVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVS--SIPAFKIYK--NGS 691 (713)
Q Consensus 620 ~~~~~~l~~~~~-~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~--~~Pt~~~~~--~g~ 691 (713)
+.+..+...... .+++|.. ......+...+..++..+. .+.|+.+|.+..+.+...+|+. .+|+++++. .++
T Consensus 85 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 85 ENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp THHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred hhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCc
Confidence 355555555444 5555654 4566777888889998874 4899999999999999999998 899999998 343
Q ss_pred EeeeecCC-CHHHHHHHHHh
Q 005125 692 RVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~ 710 (713)
..-...|. +++.|.+||+.
T Consensus 165 ~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 165 YYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEE--SSCGCHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHhcC
Confidence 22212556 99999999863
No 468
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=94.51 E-value=0.32 Score=46.79 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=58.0
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC--------CcH---hhH-HHcC----------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE--------DHP---YIA-KSEG---------------- 677 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d--------~~~---~~~-~~~~---------------- 677 (713)
..+++.||+ |+.|....|.+.++.++|. ++.++-|+++ ..+ ..+ ..++
T Consensus 100 K~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~ 179 (236)
T PLN02399 100 KVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPST 179 (236)
T ss_pred CeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcchh
Confidence 456667888 9999999999999998883 4788887753 111 121 1111
Q ss_pred ------------------CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 678 ------------------VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 678 ------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
|...|+..++ ++|+.+.++.|. ++++|++.|++..
T Consensus 180 ~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 180 APVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 1123544444 579999999999 8999999998763
No 469
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=94.50 E-value=0.36 Score=44.27 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=59.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCc-----------------------------HhhHHH
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDH-----------------------------PYIAKS 675 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~-----------------------------~~~~~~ 675 (713)
...+++.|+. |+.|....+.+.++.++++ ++.|+-|..|.. ..++..
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 104 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKA 104 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHH
Confidence 3556666777 9999999999999998885 588888876531 134557
Q ss_pred cCCCcccEEEEEE-CCeEeeee------cC---C-CHHHHHHHHHhh
Q 005125 676 EGVSSIPAFKIYK-NGSRVKEI------PG---H-QCELLEKSVKLY 711 (713)
Q Consensus 676 ~~v~~~Pt~~~~~-~g~~~~~~------~g---~-~~~~~~~~~~~~ 711 (713)
++|..+|+++++. +|+.+... .+ . +.+.|.+.|+..
T Consensus 105 ~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 105 YGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred cCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHH
Confidence 7888999888885 67766442 11 1 557788877654
No 470
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.46 E-value=0.19 Score=36.64 Aligned_cols=54 Identities=17% Similarity=0.372 Sum_probs=37.7
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHH----HcCCCcccEEEEEECCeEe
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK----SEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~----~~~v~~~Pt~~~~~~g~~~ 693 (713)
|++|.. |+.|..+..+|++. ++.+-.+|++..+...+ ..|..++|++. .+|+-+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~--i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVF--IDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE--ETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEE--ECCEEC
Confidence 355666 99999999988433 36777788877654333 34899999765 477643
No 471
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=5.4 Score=43.05 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSK------ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
+.+-|.-.++..+|..+++.|...+...|.+ +.....++.||..+.+.+.|++++++|-+.+|.++-....+-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3445556666677777777777766655533 3355566667777777777777777777777766666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhh
Q 005125 336 LYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~ 355 (713)
+....|.-++|+.+......
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHhcchHHHHHHHHHHHh
Confidence 66666667777666665544
No 472
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.42 E-value=1.6 Score=46.45 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
+..|..+|...+..|+++-|..+|+++-. +..+..+|...|+.+.=.+..+.|..
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKD------------------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 36788889999999999999999998753 23356677778886555555554443
No 473
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.40 E-value=1.6 Score=46.75 Aligned_cols=243 Identities=12% Similarity=0.037 Sum_probs=116.5
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHHH
Q 005125 268 EAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--------------DPCYHRAHHRL 333 (713)
Q Consensus 268 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~l 333 (713)
.|...|.+++|...---.+- ..-|..+|.-....-+++-|.+.|.++-.+ ...-+. -..+
T Consensus 565 q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLl 638 (1081)
T KOG1538|consen 565 QYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLL 638 (1081)
T ss_pred hhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHH
Confidence 45556666666542111110 123455555555555666666666554322 111122 2467
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHH---HHHHHHHHHHHHhhcHHHHHHHHHHHHH--cCCCChHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL---HKHLTKCNEARELKRWNDLLKETQNVIS--FGADSAPQVYAL 408 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~ 408 (713)
|.++...|++.+|...|.+.-. - + ....+ ...+..+..+...|.-++-....++--. .+-..+ ..
T Consensus 639 A~~~Ay~gKF~EAAklFk~~G~-e---n--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP----ka 708 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKRSGH-E---N--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP----KA 708 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHHcCc-h---h--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc----HH
Confidence 7888888888888888876433 1 1 00011 1122233333333333333222222110 111100 01
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcc-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL-----AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
-|..+...|+.++|+...-.- ++.+..+.. ..+-+.+...+..+.....+.-|.+.|.+.=
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~-----gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g--------- 774 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDH-----GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG--------- 774 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcc-----cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc---------
Confidence 266677778887777654321 111100000 0011223333333334444444444443321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 554 (713)
....+-.+....++|++|....++--+.- +.+|+-.|..+....+++||.+.|-+|=
T Consensus 775 -----------D~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 775 -----------DLKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred -----------cHHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 11235566777888998887766543333 3567777777777788888877776653
No 474
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.32 E-value=0.52 Score=54.91 Aligned_cols=175 Identities=14% Similarity=0.031 Sum_probs=122.1
Q ss_pred HHHHHHHHHHhhcHHHHHH------HHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc
Q 005125 371 HLTKCNEARELKRWNDLLK------ETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 371 ~~~~~~~~~~~~~~~~A~~------~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
....+......+.|.++.+ .+......-.......|..++.++..++++++|+..-.++.-+...... ....
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g--~ds~ 1012 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG--KDSP 1012 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc--CCCH
Confidence 4455556666677777766 4443333333334588999999999999999999999888654332111 1112
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI-----DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEG 519 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 519 (713)
.....+.+++...+..+....|+..+.+++.+ .|+++..-.. ..+++.++...++++.|+.+.+.|
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~---------~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALS---------FINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhh---------hhHHHHHHhhHHHHHHHHHHHHHH
Confidence 34557788888888899999999999888764 3434432221 126888888999999999999999
Q ss_pred hccCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 520 LEHEA--------YNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 520 l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
++... .....+..++.++..++++..|....+....+
T Consensus 1084 ~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1084 LAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 97532 23566777888888888888888777766654
No 475
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.28 E-value=0.73 Score=40.04 Aligned_cols=84 Identities=24% Similarity=0.155 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
.+..+...-...++.+++...+...--+.|+.++... .-|.++...|+|.+|+..|+...+-.+..+.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~------------~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~ 79 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDM------------FDGWLLIARGNYDEAARILRELLSSAGAPPY 79 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccch------------hHHHHHHHcCCHHHHHHHHHhhhccCCCchH
Confidence 3444455555689999999999888889999998877 4899999999999999999999998888888
Q ss_pred HHHHHHHHHHHcCCHH
Q 005125 529 LLCNRAACRSKLGQYE 544 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~ 544 (713)
..-.++.|+..+||.+
T Consensus 80 ~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 80 GKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHhcCChH
Confidence 8888999999999853
No 476
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.26 E-value=0.56 Score=48.83 Aligned_cols=85 Identities=14% Similarity=-0.019 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhh
Q 005125 278 ALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE-AEKAVSHYKKSSSL 356 (713)
Q Consensus 278 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 356 (713)
-+..|+.|+...+.+...|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR- 168 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR- 168 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh-
Confidence 34556666666666666666555555555556666666666666666666666666555555444 5666666666666
Q ss_pred hccccHH
Q 005125 357 ANQKDIA 363 (713)
Q Consensus 357 ~~p~~~~ 363 (713)
.+|+.+.
T Consensus 169 ~npdsp~ 175 (568)
T KOG2396|consen 169 FNPDSPK 175 (568)
T ss_pred cCCCChH
Confidence 6666553
No 477
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.11 E-value=0.2 Score=52.10 Aligned_cols=91 Identities=16% Similarity=0.086 Sum_probs=77.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005125 458 IAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA---SKYKEACYAYSEGLEHEAYNSVLLCNRA 534 (713)
Q Consensus 458 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 534 (713)
+..+....|+..|.+++...|.....+. +.+.++++. |+.-.|+.....|++++|....+|+.|+
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~------------nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLE------------NRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHH------------hHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 3345678899999999999999887776 566666664 5667788888899999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 535 ACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
.++..++++.+|+.+...+....|.+
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999999999888888854
No 478
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.08 E-value=0.44 Score=40.39 Aligned_cols=69 Identities=17% Similarity=0.094 Sum_probs=56.5
Q ss_pred HHHHHHHHHcc---cHHHHHHHHHHHhc-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 497 RLRGNLLFKAS---KYKEACYAYSEGLE-HEAY-NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 497 ~~lg~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+++++++.... +..+.+.+++..++ -+|+ .-+..+.||..+.++++|+.|+.+++..++..|++..+.-
T Consensus 36 f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 36 FNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 36788887654 56788999999996 4453 3678889999999999999999999999999999876654
No 479
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=6.2 Score=38.25 Aligned_cols=209 Identities=15% Similarity=0.101 Sum_probs=119.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc--HHHHH
Q 005125 297 SNKSAALIGLGRQIEALVECKEAIRI----DP----CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD--IAKAE 366 (713)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~----~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~ 366 (713)
..+|.-....+++++|+..|.+.+.. +. ....+...++.+|...|++..--+.....-+ .-.+. +....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre-~m~~ftk~k~~K 85 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE-AMEDFTKPKITK 85 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH-HHHHhcchhHHH
Confidence 45677777889999999999999875 11 1245788999999999988764443333222 10000 00000
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh-----HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhh
Q 005125 367 ALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA-----PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLF 441 (713)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 441 (713)
.+..++... -.....++.-+......++...... ...-..+..++...|+|.+|+......+.......++
T Consensus 86 iirtLiekf--~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK-- 161 (421)
T COG5159 86 IIRTLIEKF--PYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK-- 161 (421)
T ss_pred HHHHHHHhc--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc--
Confidence 000000000 0011233333333333332211110 1334456788999999999999887765432222111
Q ss_pred cccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q 005125 442 GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID-----PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAY 516 (713)
Q Consensus 442 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 516 (713)
..-..++..-..+|....+..++...+..|-... |....+.. -..-|.......+|.-|..+|
T Consensus 162 --~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l----------DL~sGIlhcdd~dyktA~SYF 229 (421)
T COG5159 162 --INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL----------DLLSGILHCDDRDYKTASSYF 229 (421)
T ss_pred --cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH----------HHhccceeeccccchhHHHHH
Confidence 1234567777889999999888888777664432 22111111 013466677788999999999
Q ss_pred HHHhcc
Q 005125 517 SEGLEH 522 (713)
Q Consensus 517 ~~al~~ 522 (713)
-++++-
T Consensus 230 ~Ea~Eg 235 (421)
T COG5159 230 IEALEG 235 (421)
T ss_pred HHHHhc
Confidence 999875
No 480
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.03 E-value=0.13 Score=34.08 Aligned_cols=30 Identities=33% Similarity=0.346 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+.++.++|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356778888888888888888888888765
No 481
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.02 E-value=0.18 Score=39.57 Aligned_cols=56 Identities=16% Similarity=0.384 Sum_probs=40.5
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-H----hhHHHcCCCcccEEEEEECCeEe
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-P----YIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-~----~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
|++|+. |+.|..+.+++.++.. ...++.++.+.. . .+....|+.++|.+ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 456666 9999999999998765 356777777654 2 35555688899974 6777654
No 482
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=3.4 Score=42.25 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=111.0
Q ss_pred HHHHHHHhhcHH-HHHHHHHHHHHcCCCChHHHHHHHHHHH-H-----------HccCHHHHHHHhhccccCChhhHHhh
Q 005125 374 KCNEARELKRWN-DLLKETQNVISFGADSAPQVYALQAEAL-L-----------RLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 374 ~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~la~~~-~-----------~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
+.......+.++ ++++.-.+.+..+|+.. .+|+..-.++ . ...-+++-+.+...+++.+|+.+.
T Consensus 34 ~i~~~r~~~~yd~e~l~lt~~ll~~npe~~-t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~-- 110 (421)
T KOG0529|consen 34 IIQKKREAKEYDEEHLELTSELLEKNPEFY-TVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG-- 110 (421)
T ss_pred HHHHHHhccccchHHHHHHHHHHhhCchhh-hhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH--
Confidence 333334444443 56677777788888875 3443322222 2 222456667777888888887655
Q ss_pred hcccCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGR--FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
+|+.+..++.+.+. +..-++..+++++.+|.+-.+|.+-+. ..+.+-.......+=+++.++
T Consensus 111 --------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRf--------V~~~~~~~~~~~~~El~ftt~ 174 (421)
T KOG0529|consen 111 --------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRF--------VVEQAERSRNLEKEELEFTTK 174 (421)
T ss_pred --------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHH--------HHHHHhcccccchhHHHHHHH
Confidence 67888888887654 678889999999999999888874111 122222222346677888899
Q ss_pred HhccCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHhCCCChHHHH
Q 005125 519 GLEHEAYNSVLLCNRAACRSK------LGQ------YEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 519 al~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+|.-++.+..+|.++..++.. .|+ ...-++.-..|+-.+|++..+|+
T Consensus 175 ~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~Wf 233 (421)
T KOG0529|consen 175 LINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWF 233 (421)
T ss_pred HHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceee
Confidence 999899999999998877752 231 22334444555566666666655
No 483
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.98 E-value=0.46 Score=40.29 Aligned_cols=76 Identities=5% Similarity=0.034 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 258 DPEELKFMGNEAYNKA---RFEDALALYDRAIA-INSS-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
..+..++++.++.+.. +..+.+.+++..++ ..|. .-+..+.+|..+.++++|+.++.+++..++..|++.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456777888777644 45678888888886 4453 35678888999999999999999999999999988777544
Q ss_pred H
Q 005125 333 L 333 (713)
Q Consensus 333 l 333 (713)
.
T Consensus 111 k 111 (149)
T KOG3364|consen 111 K 111 (149)
T ss_pred H
Confidence 3
No 484
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=93.86 E-value=0.83 Score=36.72 Aligned_cols=83 Identities=18% Similarity=0.374 Sum_probs=59.6
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHH----HcCCCc-ccEEEEEE---CCeEeee
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAK----SEGVSS-IPAFKIYK---NGSRVKE 695 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~----~~~v~~-~Pt~~~~~---~g~~~~~ 695 (713)
.+..++.|.. -.+-.+|.+++.++++.+ |+..|++||+|++|.+.. .|+|+- -|.+-+.. .....-+
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 4667777877 578889999999999886 789999999999998765 345542 36554443 2223334
Q ss_pred ecCC----CHHHHHHHHHhh
Q 005125 696 IPGH----QCELLEKSVKLY 711 (713)
Q Consensus 696 ~~g~----~~~~~~~~~~~~ 711 (713)
+.+. +.++|.+||+..
T Consensus 100 m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cccccccCcHHHHHHHHHhh
Confidence 4333 789999999864
No 485
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=93.85 E-value=0.19 Score=44.04 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=42.7
Q ss_pred CceEEE-eec--CchhHHHHHHHHHHH----HhCCCcEEEEEeCCCc-------------------------HhhHHHcC
Q 005125 630 GMAVVL-FCS--KAEHKQVLQLMEQVC----KRFPSVNFLKVEVEDH-------------------------PYIAKSEG 677 (713)
Q Consensus 630 ~~~vv~-f~~--cg~c~~~~~~~~~l~----~~~p~~~~~~v~~d~~-------------------------~~~~~~~~ 677 (713)
+.+|.+ |.+ |++|++|.|.+.++- ...+.+.++.|+.|.. ..+...|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 455555 444 999999987766544 4444466666655532 24555788
Q ss_pred CCcccEEEEEE-CCeEee
Q 005125 678 VSSIPAFKIYK-NGSRVK 694 (713)
Q Consensus 678 v~~~Pt~~~~~-~g~~~~ 694 (713)
|.++|++.+.. +|+.|.
T Consensus 113 v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 113 VKGIPALVILKPDGTVVT 130 (157)
T ss_pred cCcCceeEEecCCCCEeh
Confidence 99999886665 676664
No 486
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=1.2 Score=47.50 Aligned_cols=101 Identities=15% Similarity=0.024 Sum_probs=69.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH-HhccCCCCHHHHH
Q 005125 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE-GLEHEAYNSVLLC 531 (713)
Q Consensus 453 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~ 531 (713)
+...+...++...+...+..++..+|++..+.. ++|.+....|....++..+.. +....|.+.....
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQ------------NLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHH------------HHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 355556677777777777788888888777776 566666666666555555544 7777777766555
Q ss_pred HH------HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 532 NR------AACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 532 ~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+ +.....+|+..++....+++.++.|.++....
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 44 77777777777777888888877777755443
No 487
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.76 E-value=0.15 Score=33.65 Aligned_cols=30 Identities=37% Similarity=0.488 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 476 (713)
+.++.++|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 347889999999999999999999999975
No 488
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.66 E-value=3 Score=44.84 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAI--------------NSSKATYRSNKSAALIGLGRQIEALVECKE 318 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 318 (713)
-|..+|......=+++-|.+.|.++-.+ ....+. -..+|.++...|++.+|.+.|.+
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHH
Confidence 4778888888888888898888776322 111122 23578888888999999998875
No 489
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=3.2 Score=44.38 Aligned_cols=128 Identities=14% Similarity=0.009 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 274 RFEDALALYDRAIAINSSKATYRSN--KSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYK 351 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 351 (713)
.-.-++..+...+.+++.++..+.. +...+...+....+.-.+..++..+|++..++.+||.+....|....++..+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333667777777778887766433 46677778888888889999999999999999999998888887777776666
Q ss_pred H-HhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh
Q 005125 352 K-SSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA 402 (713)
Q Consensus 352 ~-al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 402 (713)
. +.. ..|.+.........++..+.....+++..++....+++....|...
T Consensus 126 ~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 126 EIAEW-LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHHHh-cCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 5 666 8888877666666666777777888888888888888888888773
No 490
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.55 E-value=0.14 Score=48.32 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=31.4
Q ss_pred EeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHH
Q 005125 664 VEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 664 v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
.+++.+..++..+||.++|+++ |.+|.. ++|. +++.|.++|
T Consensus 156 ~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 156 NPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred chHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 3444556788888999999997 788876 6788 788888764
No 491
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.54 E-value=11 Score=39.64 Aligned_cols=220 Identities=11% Similarity=0.005 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
-+-..+..+-..+..+..+.-...++.+.+... .+-.+++.++.||... ..++-...+++.++.+-++...-..|+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 333445555555556666666677777877764 4456788888888887 55777788888888888887777788887
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL 416 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 416 (713)
|.. ++.+.+..+|.+++...-|... ...-.+.+++...+-+++....+..+-.+-..+
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q---------------------~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~l 199 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQ---------------------NAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKL 199 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhh---------------------hhhHHHHHHHHHHhccccHHHHHHHHHHHHHhh
Confidence 776 8888888888888773333210 001112233333333333322222222222111
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH------
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYL-LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKM------ 489 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~------ 489 (713)
|.- ...+ +-..-.-|....++++|++.+...++.+..+..+...+-.
T Consensus 200 g~~--------------------------~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y 253 (711)
T COG1747 200 GEG--------------------------RGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKY 253 (711)
T ss_pred ccc--------------------------hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHh
Confidence 110 1111 1122234555678888888888888887777665542111
Q ss_pred --HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 490 --AKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 490 --~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
...+..+....++-..-.++-+|+..|++.+..+..+
T Consensus 254 ~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 254 RGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred ccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 1113333344444444567889999999988877655
No 492
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.47 E-value=0.65 Score=45.55 Aligned_cols=91 Identities=10% Similarity=0.052 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL-EAAIQD 571 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~~A~~~ 571 (713)
+.++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-.+.-.+...-- .++...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 5667789999999999999999999999999999999999999999999999999999988775211110000 455556
Q ss_pred HHHHHHhCCCCH
Q 005125 572 YEMLIREIPGNE 583 (713)
Q Consensus 572 ~~~al~~~p~~~ 583 (713)
|.+++.-.|.+.
T Consensus 233 y~~~~~~~~~~~ 244 (280)
T COG3629 233 YEEILRQDPLDN 244 (280)
T ss_pred HHHHhccccccc
Confidence 666655554443
No 493
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=10 Score=38.75 Aligned_cols=72 Identities=14% Similarity=0.010 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
.+.+.+-..|+..+.|+.|.....+..--...... .-+..++.+|.+..-+++|..|.++|-+|+...|++.
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snn------e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNN------EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccH------HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 55666778888999999999988887532221111 2366788999999999999999999999999999843
No 494
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.41 E-value=0.5 Score=47.92 Aligned_cols=90 Identities=17% Similarity=0.276 Sum_probs=69.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--------CC-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 265 MGNEAYNKARFEDALALYDRAIAIN--------SS-----K-----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY 326 (713)
Q Consensus 265 lg~~~~~~g~~~~A~~~~~~al~~~--------p~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 326 (713)
-|...+++++|..|.--|..+|++. |. + ..+.-.+..||+.+++.+-|+....+.|.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3445556666666666666666542 11 1 1244578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSS 354 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al 354 (713)
..-+.+.|.|+..+.+|.+|...+.-+.
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987665543
No 495
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.31 E-value=21 Score=41.94 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKA---TYRSNKSAALIGL----G---RQIEALVECKEAIRIDPCYHRAHH 331 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~ 331 (713)
.....+++...+.|++|+..|++.-.-.|+.. ++.+..|..+... | .+++|+..|++. .-.|.-+--|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 556 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYL 556 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHH
Confidence 44556778888999999999999999998764 5777777776653 3 467777777764 33556677788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
..|.+|.++|++++-+++|.-|++ ..|+++.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 587 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALK-RYSQHPE 587 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHH-hcCCCCc
Confidence 889999999999999999999999 8888763
No 496
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.20 E-value=9.6 Score=37.73 Aligned_cols=58 Identities=16% Similarity=0.057 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 263 KFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI 322 (713)
Q Consensus 263 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 322 (713)
+.+-....+..+..+-+.....|++++|..+.++..+|.-- .--..+|.+.++++++.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 33444455666667777777777777777777766665422 23355666666666653
No 497
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=93.18 E-value=1.1 Score=37.83 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=56.2
Q ss_pred cCCceEEEeec--C----chhHHHH--HHHHHHHHhCCCcEEEEEeCCCc--HhhHHHcCCCcccEEEEEE--C--CeEe
Q 005125 628 SPGMAVVLFCS--K----AEHKQVL--QLMEQVCKRFPSVNFLKVEVEDH--PYIAKSEGVSSIPAFKIYK--N--GSRV 693 (713)
Q Consensus 628 ~~~~~vv~f~~--c----g~c~~~~--~~~~~l~~~~p~~~~~~v~~d~~--~~~~~~~~v~~~Pt~~~~~--~--g~~~ 693 (713)
..+..++.++. | ..|+... |.+-++.. ...+++.+|++.. ..++..+++.+.|++.++. + .+.+
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV 93 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence 34455555655 3 4444332 22333332 3578888888754 5788899999999998884 2 4568
Q ss_pred eeecCC-CHHHHHHHHHhh
Q 005125 694 KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~ 711 (713)
.++.|. ++++|...|...
T Consensus 94 ~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 94 GRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 999999 999999988765
No 498
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.10 E-value=0.65 Score=35.28 Aligned_cols=64 Identities=16% Similarity=0.310 Sum_probs=42.6
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHh---hHHHcCCCcccEEEEEECCeEeeeecCCCHHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY---IAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKS 707 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 707 (713)
+++|.. |+.|..+..+|.+. ++.+..+|++..+. +....|..++|.+ |.+|+.++ | .++|.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~ig---g--~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELIG---G--SDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEEe---C--HHHHHHH
Confidence 556666 99999999988753 35566667665542 3333588899974 67887543 4 3666666
Q ss_pred H
Q 005125 708 V 708 (713)
Q Consensus 708 ~ 708 (713)
|
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 5
No 499
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=8.5 Score=41.20 Aligned_cols=159 Identities=13% Similarity=-0.001 Sum_probs=84.7
Q ss_pred cCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Q 005125 273 ARFEDALALYDRAIAI------------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI------------------ 322 (713)
Q Consensus 273 g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------ 322 (713)
.-|++|...|.-+... .|.+.+.+..++.+...+|+.+-|....+++|=.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3455565555555443 3455667777777777777777766666665421
Q ss_pred ---CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc-cHHHHHH-HHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005125 323 ---DPCYH---RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK-DIAKAEA-LHKHLTKCNEARELKRWNDLLKETQNV 394 (713)
Q Consensus 323 ---~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a 394 (713)
.|.+- -+++..-..+.+.|-+..|.++++-.+. ++|. ++..... +..+..++..|.-.-++-++.+...+
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKllls-Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~- 409 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLS-LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK- 409 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh-cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc-
Confidence 12221 2233333444566778888888888888 8777 5432222 22222233333222222222222221
Q ss_pred HHcCCCChHHHHHHHHHHHHHccC---HHHHHHHhhccccCChh
Q 005125 395 ISFGADSAPQVYALQAEALLRLQR---HQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 395 l~~~p~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 435 (713)
+..-|+. ..-..+|..|..... -+.|...+.+|+...|.
T Consensus 410 l~~~PN~--~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 410 LSQLPNF--GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhcCCc--hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 2333443 222334566665554 56788888888887773
No 500
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.83 E-value=6.2 Score=42.16 Aligned_cols=47 Identities=26% Similarity=0.201 Sum_probs=32.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
.++|+.+.|.+..+ ..++...|..||.....+|+++-|.++|.++-.
T Consensus 329 l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 34555555544332 234677899999999999999999999888755
Done!