Query 005125
Match_columns 713
No_of_seqs 1185 out of 5140
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 16:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 7.7E-37 2.6E-41 324.2 39.2 351 207-593 16-383 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-34 6.5E-39 305.8 36.0 328 236-593 5-349 (388)
3 3ieg_A DNAJ homolog subfamily 100.0 1.1E-32 3.6E-37 288.2 46.8 330 258-599 2-356 (359)
4 2y4t_A DNAJ homolog subfamily 100.0 4.1E-32 1.4E-36 293.8 43.8 334 254-599 21-379 (450)
5 2y4t_A DNAJ homolog subfamily 100.0 4.7E-31 1.6E-35 285.5 36.3 336 208-565 10-367 (450)
6 2xpi_A Anaphase-promoting comp 100.0 1.7E-30 5.8E-35 291.9 41.3 348 207-591 134-592 (597)
7 3ieg_A DNAJ homolog subfamily 100.0 5.8E-30 2E-34 267.4 39.6 315 235-565 8-344 (359)
8 2gw1_A Mitochondrial precursor 100.0 4.1E-31 1.4E-35 290.9 29.6 348 207-592 23-492 (514)
9 2xpi_A Anaphase-promoting comp 100.0 1.2E-29 4.2E-34 284.9 36.3 328 206-565 216-588 (597)
10 3hym_B Cell division cycle pro 100.0 1.1E-29 3.7E-34 262.2 32.4 283 255-567 18-310 (330)
11 3fp2_A TPR repeat-containing p 100.0 2.5E-29 8.5E-34 278.4 34.5 339 232-596 27-475 (537)
12 3fp2_A TPR repeat-containing p 100.0 6E-29 2.1E-33 275.3 36.4 351 202-590 37-503 (537)
13 1fch_A Peroxisomal targeting s 100.0 3.3E-29 1.1E-33 263.1 29.4 294 208-556 43-359 (368)
14 2gw1_A Mitochondrial precursor 100.0 9.6E-29 3.3E-33 271.9 34.3 336 235-595 11-461 (514)
15 4eqf_A PEX5-related protein; a 100.0 1.2E-28 4E-33 258.9 26.4 275 258-555 64-355 (365)
16 3hym_B Cell division cycle pro 100.0 1.3E-27 4.5E-32 246.5 29.5 288 236-544 28-322 (330)
17 2h6f_A Protein farnesyltransfe 100.0 2.6E-28 9E-33 254.6 24.4 251 254-569 92-361 (382)
18 4g1t_A Interferon-induced prot 100.0 5.6E-27 1.9E-31 255.2 35.7 341 232-598 53-445 (472)
19 4g1t_A Interferon-induced prot 100.0 9.1E-27 3.1E-31 253.5 36.2 318 258-593 50-416 (472)
20 1fch_A Peroxisomal targeting s 100.0 6.3E-28 2.2E-32 253.3 24.4 265 268-560 34-318 (368)
21 3cv0_A Peroxisome targeting si 100.0 1.1E-27 3.7E-32 246.8 25.6 276 260-559 22-318 (327)
22 3u4t_A TPR repeat-containing p 99.9 3.7E-26 1.2E-30 229.0 26.6 243 258-565 2-259 (272)
23 3uq3_A Heat shock protein STI1 99.9 1.5E-25 5E-30 222.2 29.0 227 258-557 4-237 (258)
24 4eqf_A PEX5-related protein; a 99.9 2.3E-26 7.9E-31 241.3 22.8 256 279-561 47-315 (365)
25 2h6f_A Protein farnesyltransfe 99.9 2.8E-26 9.7E-31 239.3 21.3 244 285-593 89-363 (382)
26 2pl2_A Hypothetical conserved 99.9 8.7E-26 3E-30 217.9 21.9 201 256-521 2-213 (217)
27 2pl2_A Hypothetical conserved 99.9 1.3E-25 4.4E-30 216.7 22.4 200 290-554 2-212 (217)
28 3sf4_A G-protein-signaling mod 99.9 6.4E-25 2.2E-29 233.4 27.1 292 257-559 7-339 (406)
29 4a1s_A PINS, partner of inscut 99.9 3.6E-25 1.2E-29 236.2 23.6 292 258-560 47-376 (411)
30 3ro2_A PINS homolog, G-protein 99.9 1.3E-24 4.3E-29 224.3 26.0 291 259-560 5-336 (338)
31 3cv0_A Peroxisome targeting si 99.9 7.3E-25 2.5E-29 225.6 24.0 237 293-559 21-272 (327)
32 3mkr_A Coatomer subunit epsilo 99.9 3.8E-24 1.3E-28 215.9 27.8 272 267-576 7-285 (291)
33 2xm6_A Protein corresponding t 99.9 1.2E-22 3.9E-27 222.0 39.9 333 203-589 56-446 (490)
34 2xm6_A Protein corresponding t 99.9 2.2E-22 7.4E-27 219.9 36.9 311 203-565 92-444 (490)
35 3uq3_A Heat shock protein STI1 99.9 1.4E-23 4.9E-28 207.8 24.7 235 292-592 4-256 (258)
36 1ouv_A Conserved hypothetical 99.9 1.4E-22 4.8E-27 203.1 30.7 234 255-564 2-259 (273)
37 3u4t_A TPR repeat-containing p 99.9 1.6E-23 5.6E-28 209.6 22.3 241 292-593 2-265 (272)
38 2q7f_A YRRB protein; TPR, prot 99.9 2.2E-23 7.7E-28 204.6 20.8 219 258-540 22-240 (243)
39 3mkr_A Coatomer subunit epsilo 99.9 7.6E-22 2.6E-26 199.1 30.9 252 301-588 7-274 (291)
40 3sf4_A G-protein-signaling mod 99.9 9.7E-24 3.3E-28 224.3 15.9 301 235-546 14-366 (406)
41 2ond_A Cleavage stimulation fa 99.9 2.8E-22 9.6E-27 204.7 25.4 251 276-589 33-303 (308)
42 2ooe_A Cleavage stimulation fa 99.9 7.7E-21 2.6E-25 209.7 38.4 339 213-584 2-460 (530)
43 2ho1_A Type 4 fimbrial biogene 99.9 6.8E-22 2.3E-26 195.3 26.9 215 254-564 31-246 (252)
44 1xnf_A Lipoprotein NLPI; TPR, 99.9 7.5E-22 2.6E-26 197.6 27.0 249 206-516 21-269 (275)
45 4abn_A Tetratricopeptide repea 99.9 5.1E-23 1.8E-27 222.9 19.8 217 272-553 81-318 (474)
46 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.5E-22 8.7E-27 201.1 22.9 228 269-562 15-250 (275)
47 2q7f_A YRRB protein; TPR, prot 99.9 1.9E-22 6.4E-27 198.0 21.5 210 292-565 22-231 (243)
48 4i17_A Hypothetical protein; T 99.9 2.9E-21 1E-25 187.8 29.5 222 255-538 3-225 (228)
49 3vtx_A MAMA; tetratricopeptide 99.9 3.9E-22 1.3E-26 186.9 22.1 173 257-481 3-175 (184)
50 2vq2_A PILW, putative fimbrial 99.9 2.1E-21 7.3E-26 187.7 27.6 213 290-564 5-219 (225)
51 3vtx_A MAMA; tetratricopeptide 99.9 7.5E-22 2.6E-26 184.9 23.5 172 291-560 3-174 (184)
52 4a1s_A PINS, partner of inscut 99.9 1.8E-22 6.2E-27 215.1 19.4 281 291-582 46-376 (411)
53 2ho1_A Type 4 fimbrial biogene 99.9 3.5E-21 1.2E-25 190.2 25.4 202 232-485 39-247 (252)
54 2vq2_A PILW, putative fimbrial 99.9 1.2E-20 4E-25 182.5 27.4 217 255-533 4-222 (225)
55 3ro2_A PINS homolog, G-protein 99.9 9.4E-22 3.2E-26 202.6 20.5 278 293-581 5-335 (338)
56 4abn_A Tetratricopeptide repea 99.9 1E-21 3.5E-26 212.7 21.3 204 254-519 97-318 (474)
57 2ooe_A Cleavage stimulation fa 99.9 6.2E-20 2.1E-24 202.5 35.1 318 254-592 8-434 (530)
58 3nf1_A KLC 1, kinesin light ch 99.9 5.8E-22 2E-26 202.2 15.2 264 254-559 22-310 (311)
59 4gyw_A UDP-N-acetylglucosamine 99.9 2.3E-21 7.8E-26 217.9 20.5 99 449-559 79-177 (723)
60 3e4b_A ALGK; tetratricopeptide 99.9 6.2E-20 2.1E-24 197.4 30.3 316 207-579 20-388 (452)
61 4gyw_A UDP-N-acetylglucosamine 99.9 1.8E-21 6.2E-26 218.7 18.4 174 254-479 4-177 (723)
62 3ulq_A Response regulator aspa 99.9 5.4E-21 1.8E-25 201.8 20.5 248 262-559 106-371 (383)
63 1ouv_A Conserved hypothetical 99.9 1.6E-19 5.6E-24 180.7 29.7 219 289-583 2-256 (273)
64 4i17_A Hypothetical protein; T 99.9 1.2E-19 4.1E-24 176.3 27.6 169 405-593 44-224 (228)
65 2ond_A Cleavage stimulation fa 99.9 3.8E-20 1.3E-24 188.8 24.3 239 256-535 47-305 (308)
66 1hz4_A MALT regulatory protein 99.8 2.7E-19 9.1E-24 188.0 26.9 313 259-583 14-354 (373)
67 2pzi_A Probable serine/threoni 99.8 7.5E-20 2.6E-24 206.9 23.0 176 254-485 389-572 (681)
68 3qky_A Outer membrane assembly 99.8 1.5E-19 5E-24 179.7 22.5 213 254-547 10-252 (261)
69 3e4b_A ALGK; tetratricopeptide 99.8 5.2E-21 1.8E-25 205.8 11.9 305 236-591 9-362 (452)
70 3q15_A PSP28, response regulat 99.8 1.8E-19 6E-24 189.7 23.1 246 261-557 103-366 (378)
71 3dra_A Protein farnesyltransfe 99.8 9.2E-19 3.2E-23 175.1 26.0 239 263-565 36-297 (306)
72 1qqe_A Vesicular transport pro 99.8 1.1E-19 3.6E-24 183.9 18.7 233 274-565 32-278 (292)
73 3urz_A Uncharacterized protein 99.8 2.5E-19 8.5E-24 171.2 20.0 171 258-481 3-191 (208)
74 1qqe_A Vesicular transport pro 99.8 9.5E-20 3.2E-24 184.2 17.9 232 261-537 39-284 (292)
75 3ulq_A Response regulator aspa 99.8 2.8E-19 9.7E-24 188.6 20.5 303 258-579 11-369 (383)
76 3qky_A Outer membrane assembly 99.8 6.4E-19 2.2E-23 175.1 21.3 194 287-563 9-231 (261)
77 1xi4_A Clathrin heavy chain; a 99.8 1.3E-17 4.3E-22 190.0 32.0 321 207-592 1002-1364(1630)
78 3edt_B KLC 2, kinesin light ch 99.8 9.3E-19 3.2E-23 175.4 17.3 240 270-557 12-282 (283)
79 1hz4_A MALT regulatory protein 99.8 4.8E-17 1.7E-21 170.7 29.2 254 293-559 14-285 (373)
80 3urz_A Uncharacterized protein 99.8 6.5E-18 2.2E-22 161.3 19.8 135 404-561 55-191 (208)
81 1xi4_A Clathrin heavy chain; a 99.8 1.4E-16 4.9E-21 181.5 33.7 292 206-552 1065-1380(1630)
82 2pzi_A Probable serine/threoni 99.8 2.2E-18 7.4E-23 195.0 18.7 199 287-553 388-595 (681)
83 3nf1_A KLC 1, kinesin light ch 99.8 6E-19 2E-23 179.7 12.9 245 289-581 23-310 (311)
84 3dra_A Protein farnesyltransfe 99.8 1.8E-17 6.3E-22 165.7 23.1 215 256-485 64-297 (306)
85 3as5_A MAMA; tetratricopeptide 99.8 1.1E-17 3.8E-22 155.9 19.3 172 259-482 8-179 (186)
86 2yhc_A BAMD, UPF0169 lipoprote 99.8 5E-17 1.7E-21 157.3 23.7 207 258-561 3-218 (225)
87 3as5_A MAMA; tetratricopeptide 99.8 2.3E-17 7.9E-22 153.7 19.8 137 404-562 43-179 (186)
88 2yhc_A BAMD, UPF0169 lipoprote 99.8 5.3E-17 1.8E-21 157.2 22.7 199 235-481 9-218 (225)
89 3dss_A Geranylgeranyl transfer 99.8 1.7E-16 5.7E-21 159.4 26.8 248 269-565 39-313 (331)
90 1b89_A Protein (clathrin heavy 99.8 2.9E-18 1E-22 176.4 12.8 280 207-553 20-308 (449)
91 4ga2_A E3 SUMO-protein ligase 99.8 1.3E-18 4.6E-23 156.4 9.0 98 264-362 2-99 (150)
92 3q15_A PSP28, response regulat 99.8 6.7E-17 2.3E-21 169.9 23.4 294 267-578 20-365 (378)
93 4ga2_A E3 SUMO-protein ligase 99.8 4.2E-18 1.4E-22 153.2 12.1 136 408-565 2-138 (150)
94 2ifu_A Gamma-SNAP; membrane fu 99.7 1.2E-17 4.1E-22 170.0 16.2 223 271-565 3-232 (307)
95 4gco_A Protein STI-1; structur 99.7 2.1E-17 7.2E-22 143.5 14.9 108 254-362 8-115 (126)
96 3gyz_A Chaperone protein IPGC; 99.7 6.1E-17 2.1E-21 144.8 16.1 126 414-561 13-138 (151)
97 3edt_B KLC 2, kinesin light ch 99.7 1.3E-16 4.6E-21 159.6 20.0 206 257-477 41-282 (283)
98 3dss_A Geranylgeranyl transfer 99.7 1.4E-15 4.9E-20 152.6 25.9 233 304-590 40-316 (331)
99 3q7a_A Farnesyltransferase alp 99.7 6.8E-16 2.3E-20 155.5 23.6 242 259-564 54-340 (349)
100 2r5s_A Uncharacterized protein 99.7 2.6E-17 8.9E-22 152.6 11.5 165 261-475 8-172 (176)
101 4f3v_A ESX-1 secretion system 99.7 1.2E-16 4E-21 155.8 15.6 68 261-329 9-83 (282)
102 4gco_A Protein STI-1; structur 99.7 3E-16 1E-20 136.1 16.6 108 446-565 12-119 (126)
103 3qou_A Protein YBBN; thioredox 99.7 1.7E-16 5.8E-21 159.6 16.4 176 250-475 108-283 (287)
104 2r5s_A Uncharacterized protein 99.7 2.8E-16 9.5E-21 145.6 16.2 80 464-555 91-172 (176)
105 3qou_A Protein YBBN; thioredox 99.7 9.4E-16 3.2E-20 154.2 21.0 169 289-555 113-283 (287)
106 1b89_A Protein (clathrin heavy 99.7 6.9E-18 2.4E-22 173.6 5.2 253 245-558 20-274 (449)
107 3zzx_A Thioredoxin; oxidoreduc 99.7 2.7E-16 9.3E-21 130.6 13.1 100 613-712 2-105 (105)
108 4f3v_A ESX-1 secretion system 99.7 1.1E-15 3.8E-20 148.9 18.6 223 296-564 10-244 (282)
109 3gyz_A Chaperone protein IPGC; 99.7 3.8E-16 1.3E-20 139.6 13.3 108 254-362 31-138 (151)
110 2ifu_A Gamma-SNAP; membrane fu 99.7 1.3E-15 4.3E-20 155.1 18.7 191 272-483 29-230 (307)
111 2vsy_A XCC0866; transferase, g 99.7 1.2E-15 4.2E-20 169.5 20.0 162 272-485 2-166 (568)
112 2qsi_A Putative hydrogenase ex 99.7 3.4E-16 1.2E-20 133.4 11.2 94 618-711 21-121 (137)
113 2c2l_A CHIP, carboxy terminus 99.7 1.3E-15 4.5E-20 152.5 17.1 198 256-476 1-199 (281)
114 2vsy_A XCC0866; transferase, g 99.7 2.6E-15 8.8E-20 166.9 21.2 162 381-565 2-166 (568)
115 2av4_A Thioredoxin-like protei 99.7 5.7E-16 2E-20 133.7 11.4 99 613-711 23-137 (160)
116 2qgv_A Hydrogenase-1 operon pr 99.6 4.3E-16 1.5E-20 133.3 9.7 95 618-712 23-124 (140)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.6 9.3E-15 3.2E-19 139.8 18.8 148 404-576 7-170 (213)
118 2c2l_A CHIP, carboxy terminus 99.6 1.9E-15 6.7E-20 151.3 14.4 198 290-556 1-199 (281)
119 1p5q_A FKBP52, FK506-binding p 99.6 4.7E-17 1.6E-21 167.6 2.6 141 404-556 148-294 (336)
120 2vgx_A Chaperone SYCD; alterna 99.6 3.3E-15 1.1E-19 133.7 14.2 119 423-563 7-125 (148)
121 1p5q_A FKBP52, FK506-binding p 99.6 1.6E-15 5.4E-20 156.1 13.6 177 204-430 79-292 (336)
122 3rjv_A Putative SEL1 repeat pr 99.6 3.8E-14 1.3E-18 135.5 22.2 187 276-534 3-207 (212)
123 3rjv_A Putative SEL1 repeat pr 99.6 1.1E-14 3.6E-19 139.3 17.4 178 310-559 3-200 (212)
124 2xcb_A PCRH, regulatory protei 99.6 1.9E-14 6.6E-19 127.8 16.1 120 424-565 5-124 (142)
125 3q7a_A Farnesyltransferase alp 99.6 5.2E-14 1.8E-18 141.8 20.1 179 301-543 62-258 (349)
126 1dce_A Protein (RAB geranylger 99.6 5.9E-15 2E-19 161.8 14.3 194 268-525 37-270 (567)
127 3upv_A Heat shock protein STI1 99.6 3.2E-14 1.1E-18 123.5 16.2 102 256-358 1-102 (126)
128 2hr2_A Hypothetical protein; a 99.6 1.6E-14 5.5E-19 127.1 13.4 103 259-362 11-136 (159)
129 2fo7_A Synthetic consensus TPR 99.6 8.1E-14 2.8E-18 121.8 17.1 135 404-560 2-136 (136)
130 2vgx_A Chaperone SYCD; alterna 99.6 3.4E-14 1.2E-18 127.1 14.6 108 254-362 16-123 (148)
131 2fo7_A Synthetic consensus TPR 99.6 8.9E-14 3E-18 121.5 17.1 133 260-434 2-134 (136)
132 2qfc_A PLCR protein; TPR, HTH, 99.6 9.4E-14 3.2E-18 140.2 19.6 184 326-557 74-267 (293)
133 2xcb_A PCRH, regulatory protei 99.6 4.7E-14 1.6E-18 125.3 15.0 108 254-362 13-120 (142)
134 3sz7_A HSC70 cochaperone (SGT) 99.6 7.7E-14 2.6E-18 127.3 16.2 116 446-573 10-125 (164)
135 2qfc_A PLCR protein; TPR, HTH, 99.6 1.5E-13 5.1E-18 138.7 19.8 181 256-477 72-267 (293)
136 4gcn_A Protein STI-1; structur 99.5 4.2E-14 1.4E-18 122.8 13.2 103 258-361 7-116 (127)
137 2hr2_A Hypothetical protein; a 99.5 2.6E-14 9E-19 125.8 11.7 111 446-563 10-138 (159)
138 1dce_A Protein (RAB geranylger 99.5 8.1E-15 2.8E-19 160.7 10.3 189 308-560 44-271 (567)
139 1a17_A Serine/threonine protei 99.5 5.6E-13 1.9E-17 121.4 20.0 132 258-394 12-143 (166)
140 3sz7_A HSC70 cochaperone (SGT) 99.5 9.3E-14 3.2E-18 126.8 14.7 107 255-362 7-113 (164)
141 3upv_A Heat shock protein STI1 99.5 1.2E-13 4.3E-18 119.7 14.2 100 446-557 3-102 (126)
142 4gcn_A Protein STI-1; structur 99.5 1.2E-13 3.9E-18 120.0 13.4 103 446-560 7-116 (127)
143 3u3w_A Transcriptional activat 99.5 3E-13 1E-17 136.5 18.4 177 261-476 77-266 (293)
144 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.7E-13 6E-18 130.8 15.9 139 259-401 6-154 (213)
145 2lni_A Stress-induced-phosphop 99.5 2.3E-13 7.8E-18 118.8 15.2 108 254-362 11-118 (133)
146 3mv2_B Coatomer subunit epsilo 99.5 2E-12 6.8E-17 127.6 23.2 277 257-578 12-305 (310)
147 1hxi_A PEX5, peroxisome target 99.5 1.4E-13 4.7E-18 118.3 12.7 100 261-361 19-118 (121)
148 2e2e_A Formate-dependent nitri 99.5 7.8E-14 2.7E-18 129.1 12.0 130 413-564 20-152 (177)
149 1hxi_A PEX5, peroxisome target 99.5 1.3E-13 4.6E-18 118.4 12.1 102 449-562 19-120 (121)
150 4e6h_A MRNA 3'-END-processing 99.5 5.2E-11 1.8E-15 132.2 36.1 316 254-591 61-512 (679)
151 3q49_B STIP1 homology and U bo 99.5 9.7E-13 3.3E-17 115.7 17.9 106 254-360 4-109 (137)
152 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 6.5E-14 2.2E-18 150.4 12.0 160 202-362 198-385 (457)
153 2vyi_A SGTA protein; chaperone 99.5 4.1E-13 1.4E-17 116.6 15.0 107 255-362 8-114 (131)
154 3u3w_A Transcriptional activat 99.5 3E-13 1E-17 136.5 16.1 140 405-556 117-266 (293)
155 4e6h_A MRNA 3'-END-processing 99.5 4.9E-11 1.7E-15 132.4 35.0 355 208-581 50-536 (679)
156 3gw4_A Uncharacterized protein 99.5 2.4E-13 8.1E-18 128.7 13.9 173 269-481 2-181 (203)
157 3rkv_A Putative peptidylprolyl 99.5 6E-13 2.1E-17 121.1 16.0 104 258-362 10-131 (162)
158 1a17_A Serine/threonine protei 99.5 6.7E-13 2.3E-17 120.9 16.2 131 404-556 14-146 (166)
159 2fbn_A 70 kDa peptidylprolyl i 99.5 6.8E-14 2.3E-18 132.2 9.5 139 405-555 40-185 (198)
160 1wao_1 Serine/threonine protei 99.5 3.6E-14 1.2E-18 153.1 7.9 139 259-439 6-157 (477)
161 3evi_A Phosducin-like protein 99.5 2.6E-13 8.9E-18 114.6 11.3 91 618-711 9-112 (118)
162 2fbn_A 70 kDa peptidylprolyl i 99.5 9.8E-13 3.4E-17 124.1 16.1 105 257-362 36-156 (198)
163 1r26_A Thioredoxin; redox-acti 99.5 9.7E-13 3.3E-17 113.4 14.2 109 603-711 11-121 (125)
164 1gh2_A Thioredoxin-like protei 99.4 1.2E-12 4.1E-17 109.7 14.0 100 613-712 3-106 (107)
165 4euy_A Uncharacterized protein 99.4 1.8E-13 6.3E-18 114.2 8.7 98 615-712 4-104 (105)
166 3f3q_A Thioredoxin-1; His TAG, 99.4 1.2E-12 4.1E-17 110.0 13.8 96 616-711 11-108 (109)
167 1na0_A Designed protein CTPR3; 99.4 4.7E-12 1.6E-16 108.8 17.7 107 255-362 4-111 (125)
168 3rkv_A Putative peptidylprolyl 99.4 1.6E-12 5.5E-17 118.2 14.8 114 446-561 10-131 (162)
169 2lni_A Stress-induced-phosphop 99.4 1.6E-12 5.6E-17 113.3 14.0 116 404-541 17-132 (133)
170 1zu2_A Mitochondrial import re 99.4 4.6E-13 1.6E-17 117.5 10.2 110 458-588 13-143 (158)
171 2kck_A TPR repeat; tetratricop 99.4 8.3E-13 2.8E-17 111.2 11.4 106 255-361 2-110 (112)
172 1elw_A TPR1-domain of HOP; HOP 99.4 4.7E-12 1.6E-16 107.6 16.2 104 258-362 3-106 (118)
173 3mv2_B Coatomer subunit epsilo 99.4 1.1E-11 3.7E-16 122.3 20.6 202 278-485 85-291 (310)
174 2e2e_A Formate-dependent nitri 99.4 3.9E-12 1.3E-16 117.5 16.5 117 245-362 27-149 (177)
175 3qfa_C Thioredoxin; protein-pr 99.4 1.3E-12 4.5E-17 111.1 12.1 97 615-711 15-115 (116)
176 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1.2E-13 4.2E-18 148.3 7.1 146 271-468 246-406 (457)
177 3m9j_A Thioredoxin; oxidoreduc 99.4 2.9E-12 1E-16 106.9 13.7 99 613-711 2-104 (105)
178 2vyi_A SGTA protein; chaperone 99.4 3.2E-12 1.1E-16 110.9 14.3 118 404-543 13-130 (131)
179 1elw_A TPR1-domain of HOP; HOP 99.4 6.1E-12 2.1E-16 106.9 15.6 108 446-565 3-110 (118)
180 3q49_B STIP1 homology and U bo 99.4 2.9E-12 9.9E-17 112.6 13.8 103 445-559 7-109 (137)
181 3iv4_A Putative oxidoreductase 99.4 1E-12 3.6E-17 106.9 9.6 100 608-708 3-111 (112)
182 3gw4_A Uncharacterized protein 99.4 1E-11 3.6E-16 117.2 18.4 168 379-559 3-179 (203)
183 1na0_A Designed protein CTPR3; 99.4 6.5E-12 2.2E-16 107.9 15.5 104 449-564 11-114 (125)
184 1ep7_A Thioredoxin CH1, H-type 99.4 3.9E-12 1.3E-16 107.6 13.7 102 611-712 2-110 (112)
185 2dba_A Smooth muscle cell asso 99.4 7.5E-12 2.5E-16 111.4 16.2 109 254-363 23-134 (148)
186 4b4t_Q 26S proteasome regulato 99.4 1.3E-11 4.6E-16 131.8 21.2 214 259-476 4-245 (434)
187 2xev_A YBGF; tetratricopeptide 99.4 7.7E-12 2.6E-16 108.5 15.6 102 260-362 3-110 (129)
188 1xfl_A Thioredoxin H1; AT3G510 99.4 4.6E-12 1.6E-16 109.1 13.6 103 610-712 15-123 (124)
189 3d6i_A Monothiol glutaredoxin- 99.4 5.4E-12 1.9E-16 106.6 13.5 98 614-711 3-107 (112)
190 1zu2_A Mitochondrial import re 99.4 2.2E-12 7.7E-17 113.2 11.2 92 270-362 13-125 (158)
191 4b4t_Q 26S proteasome regulato 99.4 5E-12 1.7E-16 135.2 16.3 218 293-556 4-245 (434)
192 2l6c_A Thioredoxin; oxidoreduc 99.4 2.2E-12 7.5E-17 108.6 10.7 96 616-712 7-105 (110)
193 2oe3_A Thioredoxin-3; electron 99.4 4E-12 1.4E-16 107.6 12.3 99 613-711 14-114 (114)
194 2if4_A ATFKBP42; FKBP-like, al 99.4 9.1E-13 3.1E-17 135.5 9.2 139 256-436 176-332 (338)
195 2vim_A Thioredoxin, TRX; thior 99.4 8.9E-12 3E-16 103.7 13.6 97 615-711 3-103 (104)
196 2xev_A YBGF; tetratricopeptide 99.4 8.1E-12 2.8E-16 108.4 13.9 105 449-565 4-114 (129)
197 1ihg_A Cyclophilin 40; ppiase 99.4 5.9E-12 2E-16 130.8 15.1 103 259-362 223-341 (370)
198 1elr_A TPR2A-domain of HOP; HO 99.4 6.1E-12 2.1E-16 109.2 12.6 103 257-360 2-111 (131)
199 2wz9_A Glutaredoxin-3; protein 99.3 8.8E-12 3E-16 111.8 13.7 101 612-712 13-117 (153)
200 2es7_A Q8ZP25_salty, putative 99.3 8.6E-13 2.9E-17 115.8 6.5 93 620-712 25-124 (142)
201 2j23_A Thioredoxin; immune pro 99.3 8.2E-12 2.8E-16 107.1 12.5 106 607-712 11-120 (121)
202 3gnj_A Thioredoxin domain prot 99.3 1.2E-11 4.1E-16 104.3 13.3 95 618-712 10-109 (111)
203 3k9i_A BH0479 protein; putativ 99.3 8.4E-13 2.9E-17 112.7 6.0 105 459-575 2-110 (117)
204 1syr_A Thioredoxin; SGPP, stru 99.3 1.2E-11 4.2E-16 104.4 13.0 98 615-712 12-111 (112)
205 2vm1_A Thioredoxin, thioredoxi 99.3 1.6E-11 5.4E-16 104.9 13.8 101 612-712 7-113 (118)
206 2kck_A TPR repeat; tetratricop 99.3 5E-12 1.7E-16 106.3 10.6 104 446-561 5-111 (112)
207 2dba_A Smooth muscle cell asso 99.3 1.7E-11 5.7E-16 109.1 14.4 109 445-565 26-137 (148)
208 3gix_A Thioredoxin-like protei 99.3 1.2E-11 4E-16 110.1 12.3 99 613-711 5-119 (149)
209 2xc2_A Thioredoxinn; oxidoredu 99.3 1.8E-11 6.2E-16 104.3 12.9 98 613-711 15-116 (117)
210 2if4_A ATFKBP42; FKBP-like, al 99.3 2E-12 7E-17 132.9 8.2 102 449-562 232-334 (338)
211 1ti3_A Thioredoxin H, PTTRXH1; 99.3 1.3E-11 4.5E-16 104.5 11.9 101 612-712 5-111 (113)
212 1xwb_A Thioredoxin; dimerizati 99.3 2.5E-11 8.4E-16 101.4 13.4 98 614-711 3-105 (106)
213 1wao_1 Serine/threonine protei 99.3 3.8E-13 1.3E-17 145.1 2.3 140 404-565 7-159 (477)
214 2pu9_C TRX-F, thioredoxin F-ty 99.3 1.8E-11 6E-16 103.3 12.0 94 619-712 12-110 (111)
215 3ro3_A PINS homolog, G-protein 99.3 2E-11 7E-16 110.2 13.2 140 259-434 9-160 (164)
216 3ro3_A PINS homolog, G-protein 99.3 9.9E-12 3.4E-16 112.3 10.8 147 403-559 9-161 (164)
217 3d22_A TRXH4, thioredoxin H-ty 99.3 2.8E-11 9.6E-16 106.7 13.4 102 610-711 23-130 (139)
218 3tco_A Thioredoxin (TRXA-1); d 99.3 2.6E-11 9E-16 101.8 12.6 95 618-712 10-108 (109)
219 2vlu_A Thioredoxin, thioredoxi 99.3 4E-11 1.4E-15 103.0 13.7 101 612-712 13-119 (122)
220 2f51_A Thioredoxin; electron t 99.3 3.5E-11 1.2E-15 102.5 13.0 100 613-712 5-112 (118)
221 1elr_A TPR2A-domain of HOP; HO 99.3 7.2E-11 2.5E-15 102.2 15.2 102 446-559 3-111 (131)
222 2ppt_A Thioredoxin-2; thiredox 99.3 2.8E-11 9.5E-16 108.5 12.3 95 618-712 53-151 (155)
223 1faa_A Thioredoxin F; electron 99.3 3.9E-11 1.3E-15 103.4 12.8 94 619-712 25-123 (124)
224 1ihg_A Cyclophilin 40; ppiase 99.3 3E-11 1E-15 125.5 14.3 134 404-549 224-363 (370)
225 3die_A Thioredoxin, TRX; elect 99.3 3.4E-11 1.2E-15 100.5 12.0 93 618-711 9-105 (106)
226 3k9i_A BH0479 protein; putativ 99.3 9.3E-12 3.2E-16 106.1 8.3 91 271-362 2-95 (117)
227 2e0q_A Thioredoxin; electron t 99.3 4.9E-11 1.7E-15 99.1 12.3 94 619-712 6-102 (104)
228 1nsw_A Thioredoxin, TRX; therm 99.3 4.6E-11 1.6E-15 99.5 11.9 93 620-712 8-104 (105)
229 2voc_A Thioredoxin; electron t 99.3 3.5E-11 1.2E-15 101.5 11.3 93 619-712 8-104 (112)
230 3uvt_A Thioredoxin domain-cont 99.2 5.4E-11 1.8E-15 100.2 12.1 93 618-711 11-110 (111)
231 1w4v_A Thioredoxin, mitochondr 99.2 9.9E-11 3.4E-15 99.9 13.2 99 614-712 15-118 (119)
232 3emx_A Thioredoxin; structural 99.2 3.1E-11 1E-15 105.7 10.1 97 612-712 17-125 (135)
233 3hz4_A Thioredoxin; NYSGXRC, P 99.2 6.2E-11 2.1E-15 104.5 12.1 94 618-711 12-110 (140)
234 2trx_A Thioredoxin; electron t 99.2 1.2E-10 4.1E-15 97.5 12.9 94 619-712 9-107 (108)
235 3p2a_A Thioredoxin 2, putative 99.2 8.9E-11 3E-15 104.7 12.8 94 618-711 44-141 (148)
236 1t00_A Thioredoxin, TRX; redox 99.2 1.3E-10 4.5E-15 98.0 13.2 94 619-712 12-110 (112)
237 2trc_P Phosducin, MEKA, PP33; 99.2 6E-11 2.1E-15 112.2 12.2 104 607-712 96-212 (217)
238 2djk_A PDI, protein disulfide- 99.2 5.6E-11 1.9E-15 103.5 10.8 94 618-712 12-114 (133)
239 1qgv_A Spliceosomal protein U5 99.2 6.4E-11 2.2E-15 104.4 11.0 99 613-711 5-119 (142)
240 1dby_A Chloroplast thioredoxin 99.2 1.3E-10 4.3E-15 97.2 12.1 95 618-712 7-106 (107)
241 2l6j_A TPR repeat-containing p 99.2 1E-11 3.6E-16 104.4 5.5 96 258-353 3-104 (111)
242 2yzu_A Thioredoxin; redox prot 99.2 1.1E-10 3.9E-15 97.8 11.9 93 619-711 8-104 (109)
243 2dbc_A PDCL2, unnamed protein 99.2 7.7E-11 2.6E-15 103.0 11.1 100 607-711 7-119 (135)
244 2o8v_B Thioredoxin 1; disulfid 99.2 1.2E-10 4.1E-15 100.7 12.0 99 613-712 24-127 (128)
245 2i4a_A Thioredoxin; acidophIle 99.2 1.3E-10 4.6E-15 97.0 11.9 93 619-711 9-106 (107)
246 1thx_A Thioredoxin, thioredoxi 99.2 2.9E-10 1E-14 96.4 14.0 99 613-712 9-112 (115)
247 3cxg_A Putative thioredoxin; m 99.2 8.1E-11 2.8E-15 102.6 10.5 99 612-711 21-127 (133)
248 1v98_A Thioredoxin; oxidoreduc 99.2 1.4E-10 4.8E-15 102.2 12.1 95 618-712 39-137 (140)
249 1fb6_A Thioredoxin M; electron 99.2 2.9E-10 1E-14 94.5 12.6 93 619-711 7-104 (105)
250 3ga4_A Dolichyl-diphosphooligo 99.2 1E-10 3.5E-15 105.1 9.7 99 612-711 19-151 (178)
251 2i1u_A Thioredoxin, TRX, MPT46 99.2 2.5E-10 8.5E-15 97.8 11.8 93 619-711 19-116 (121)
252 3h79_A Thioredoxin-like protei 99.1 1.5E-10 5.2E-15 100.1 10.2 95 618-712 21-127 (127)
253 3ul3_B Thioredoxin, thioredoxi 99.1 7.3E-11 2.5E-15 102.3 8.1 87 625-711 38-128 (128)
254 2uy1_A Cleavage stimulation fa 99.1 1.3E-07 4.4E-12 101.9 35.4 294 258-565 13-358 (493)
255 1na3_A Designed protein CTPR2; 99.1 3.6E-10 1.2E-14 90.9 11.7 85 257-341 7-91 (91)
256 2dj1_A Protein disulfide-isome 99.1 2E-10 6.7E-15 101.4 10.4 98 613-712 19-123 (140)
257 1a0r_P Phosducin, MEKA, PP33; 99.1 5.3E-10 1.8E-14 107.0 13.9 103 607-711 109-224 (245)
258 2l6j_A TPR repeat-containing p 99.1 4.7E-11 1.6E-15 100.4 4.9 95 446-552 3-103 (111)
259 1x5d_A Protein disulfide-isome 99.1 4.1E-10 1.4E-14 98.3 11.2 93 619-711 14-115 (133)
260 1x5e_A Thioredoxin domain cont 99.1 3.5E-10 1.2E-14 97.7 10.6 95 613-711 9-108 (126)
261 2l5l_A Thioredoxin; structural 99.1 5.2E-10 1.8E-14 97.9 11.8 94 618-712 15-125 (136)
262 1oaz_A Thioredoxin 1; immune s 99.1 1.6E-10 5.4E-15 99.1 8.0 95 618-712 9-122 (123)
263 3dxb_A Thioredoxin N-terminall 99.1 6.6E-10 2.3E-14 106.3 12.8 97 616-712 16-117 (222)
264 1wmj_A Thioredoxin H-type; str 99.1 3.9E-11 1.3E-15 104.4 3.8 102 611-712 14-121 (130)
265 1mek_A Protein disulfide isome 99.1 2.5E-10 8.6E-15 97.6 8.4 95 618-712 13-116 (120)
266 1zma_A Bacterocin transport ac 99.1 2.2E-10 7.5E-15 97.6 8.0 93 618-710 18-118 (118)
267 2l57_A Uncharacterized protein 99.1 4.4E-10 1.5E-14 97.0 9.6 86 627-712 24-116 (126)
268 3aps_A DNAJ homolog subfamily 99.1 3.6E-10 1.2E-14 97.0 9.0 93 619-711 10-111 (122)
269 2kat_A Uncharacterized protein 99.1 7.9E-10 2.7E-14 93.6 10.9 85 276-361 2-86 (115)
270 3hxs_A Thioredoxin, TRXP; elec 99.1 1E-09 3.5E-14 96.9 11.9 94 618-712 28-138 (141)
271 2dml_A Protein disulfide-isome 99.1 5.9E-10 2E-14 96.8 10.1 98 613-711 19-122 (130)
272 2kat_A Uncharacterized protein 99.1 1.1E-09 3.6E-14 92.8 11.2 87 464-562 2-88 (115)
273 3dml_A Putative uncharacterize 99.0 2.6E-10 9E-15 94.4 6.4 83 629-711 18-108 (116)
274 3apq_A DNAJ homolog subfamily 99.0 1.1E-09 3.7E-14 103.9 11.7 94 618-711 103-200 (210)
275 2fwh_A Thiol:disulfide interch 99.0 7.8E-10 2.7E-14 96.5 9.8 98 614-711 14-126 (134)
276 2kc7_A BFR218_protein; tetratr 99.0 7.6E-10 2.6E-14 90.8 9.2 91 262-361 3-94 (99)
277 1na3_A Designed protein CTPR2; 99.0 2.6E-09 9E-14 85.7 11.9 84 446-541 8-91 (91)
278 2dj0_A Thioredoxin-related tra 99.0 8.8E-11 3E-15 103.1 3.2 93 618-710 13-118 (137)
279 2kc7_A BFR218_protein; tetratr 99.0 5.8E-10 2E-14 91.5 7.9 86 498-583 5-95 (99)
280 3ma5_A Tetratricopeptide repea 99.0 2E-09 6.8E-14 88.5 10.4 71 255-325 3-73 (100)
281 3n71_A Histone lysine methyltr 99.0 2.1E-09 7.1E-14 114.9 12.8 131 262-430 312-462 (490)
282 2uy1_A Cleavage stimulation fa 99.0 2.9E-07 1E-11 99.1 29.5 311 206-553 30-380 (493)
283 1nho_A Probable thioredoxin; b 98.9 1.6E-09 5.4E-14 86.1 7.6 77 632-712 4-84 (85)
284 1a8l_A Protein disulfide oxido 98.9 3.6E-09 1.2E-13 101.8 11.4 92 621-712 125-225 (226)
285 3fk8_A Disulphide isomerase; A 98.9 2.3E-09 7.9E-14 93.4 9.1 86 627-712 27-132 (133)
286 1wou_A Thioredoxin -related pr 98.9 2.9E-09 1E-13 91.2 9.5 97 614-710 7-122 (123)
287 2fgx_A Putative thioredoxin; N 98.9 1.9E-09 6.5E-14 88.0 7.8 74 631-708 30-106 (107)
288 1fo5_A Thioredoxin; disulfide 98.9 2.1E-09 7.2E-14 85.3 7.9 77 631-711 4-84 (85)
289 3ma5_A Tetratricopeptide repea 98.9 4E-09 1.4E-13 86.7 9.1 73 288-361 2-74 (100)
290 1ttz_A Conserved hypothetical 98.9 2E-09 7E-14 84.8 6.9 71 632-711 2-75 (87)
291 3n71_A Histone lysine methyltr 98.9 1.2E-08 4E-13 109.0 14.0 136 410-556 316-464 (490)
292 2djj_A PDI, protein disulfide- 98.9 2.8E-09 9.6E-14 91.2 7.5 91 619-712 14-116 (121)
293 2dj3_A Protein disulfide-isome 98.9 1.4E-09 4.9E-14 94.8 5.2 93 620-712 15-117 (133)
294 3idv_A Protein disulfide-isome 98.9 8.7E-09 3E-13 100.2 10.8 98 612-711 16-120 (241)
295 1z6n_A Hypothetical protein PA 98.8 4.8E-09 1.6E-13 94.5 7.1 81 630-711 55-141 (167)
296 3idv_A Protein disulfide-isome 98.8 1.2E-08 4E-13 99.3 10.3 95 617-712 135-236 (241)
297 2yj7_A LPBCA thioredoxin; oxid 98.3 5.3E-10 1.8E-14 93.1 0.0 91 621-711 10-105 (106)
298 2qc7_A ERP31, ERP28, endoplasm 98.8 2E-08 6.8E-13 95.9 10.6 93 618-711 11-117 (240)
299 3u64_A Protein TP_0956; tetrat 98.8 3.6E-07 1.2E-11 87.7 19.1 86 463-560 179-273 (301)
300 3f8u_A Protein disulfide-isome 98.8 2E-08 6.8E-13 108.5 11.8 95 618-712 7-108 (481)
301 2kuc_A Putative disulphide-iso 98.8 1.2E-08 4.2E-13 88.4 8.2 85 628-712 26-120 (130)
302 2r2j_A Thioredoxin domain-cont 98.8 2E-08 6.8E-13 104.7 11.3 93 619-711 12-115 (382)
303 3ed3_A Protein disulfide-isome 98.8 4E-08 1.4E-12 98.1 12.8 94 618-711 23-140 (298)
304 3q6o_A Sulfhydryl oxidase 1; p 98.8 2.7E-08 9.1E-13 96.8 11.1 99 612-711 13-125 (244)
305 2c0g_A ERP29 homolog, windbeut 98.7 3E-08 1E-12 94.9 9.5 90 618-712 22-131 (248)
306 2b5e_A Protein disulfide-isome 98.7 4.1E-08 1.4E-12 106.6 11.8 98 613-711 16-120 (504)
307 1klx_A Cysteine rich protein B 98.7 1.8E-07 6.1E-12 81.8 13.7 110 382-522 9-126 (138)
308 3ly7_A Transcriptional activat 98.7 2.1E-07 7.3E-12 93.3 15.8 73 398-482 273-345 (372)
309 1klx_A Cysteine rich protein B 98.7 1.2E-07 4E-12 83.0 12.4 112 417-558 9-128 (138)
310 2ywm_A Glutaredoxin-like prote 98.7 4.5E-08 1.5E-12 94.2 10.4 89 620-711 126-218 (229)
311 3ly7_A Transcriptional activat 98.7 9.4E-08 3.2E-12 95.9 12.3 139 255-401 190-343 (372)
312 1sen_A Thioredoxin-like protei 98.7 1.1E-08 3.7E-13 92.5 4.5 106 606-711 23-146 (164)
313 3bee_A Putative YFRE protein; 98.7 1.6E-07 5.5E-12 75.3 10.5 72 255-326 2-76 (93)
314 3us3_A Calsequestrin-1; calciu 98.6 9.7E-08 3.3E-12 98.7 11.4 93 618-711 19-122 (367)
315 1sji_A Calsequestrin 2, calseq 98.6 7.2E-08 2.5E-12 99.2 10.3 92 618-711 17-120 (350)
316 3ph9_A Anterior gradient prote 98.6 2.3E-08 7.8E-13 88.1 5.2 93 607-699 21-120 (151)
317 2lst_A Thioredoxin; structural 98.1 3.6E-09 1.2E-13 91.8 0.0 87 625-711 15-114 (130)
318 1a8l_A Protein disulfide oxido 98.6 1.3E-07 4.5E-12 90.7 10.3 93 619-711 9-111 (226)
319 3bee_A Putative YFRE protein; 98.6 3.1E-07 1.1E-11 73.6 10.4 72 289-361 2-76 (93)
320 1lu4_A Soluble secreted antige 98.6 2.6E-07 8.9E-12 80.5 10.7 83 629-712 24-135 (136)
321 2ju5_A Thioredoxin disulfide i 98.6 1.6E-07 5.4E-12 83.9 9.3 85 627-712 45-151 (154)
322 2v5f_A Prolyl 4-hydroxylase su 98.6 5.7E-07 2E-11 74.1 11.7 78 257-334 3-87 (104)
323 3u64_A Protein TP_0956; tetrat 98.6 9.4E-07 3.2E-11 84.8 14.4 114 247-361 140-273 (301)
324 2hls_A Protein disulfide oxido 98.6 2.5E-07 8.7E-12 89.4 10.8 77 631-711 140-224 (243)
325 1ilo_A Conserved hypothetical 98.6 2.8E-07 9.6E-12 71.2 9.0 68 634-708 4-76 (77)
326 3apo_A DNAJ homolog subfamily 98.5 1.4E-07 4.6E-12 108.5 9.8 96 616-711 120-219 (780)
327 3kp8_A Vkorc1/thioredoxin doma 98.5 1.2E-07 4.1E-12 78.2 6.6 71 631-709 14-91 (106)
328 3f9u_A Putative exported cytoc 98.5 2.3E-07 7.9E-12 84.7 8.6 85 627-711 45-164 (172)
329 1wjk_A C330018D20RIK protein; 98.5 2E-07 6.9E-12 76.0 7.1 77 629-712 15-95 (100)
330 1pc2_A Mitochondria fission pr 98.5 7.8E-07 2.7E-11 77.0 10.8 92 462-565 13-109 (152)
331 1zzo_A RV1677; thioredoxin fol 98.5 7.5E-07 2.6E-11 77.4 10.7 83 629-712 25-134 (136)
332 2v5f_A Prolyl 4-hydroxylase su 98.5 1.4E-06 4.7E-11 71.8 11.6 80 496-577 8-94 (104)
333 3t58_A Sulfhydryl oxidase 1; o 98.5 4.3E-07 1.5E-11 97.4 10.7 99 612-711 13-125 (519)
334 2ywm_A Glutaredoxin-like prote 98.5 4.2E-07 1.4E-11 87.3 9.6 92 620-711 9-113 (229)
335 3qwp_A SET and MYND domain-con 98.5 6.5E-07 2.2E-11 94.2 11.7 94 262-355 290-399 (429)
336 3qww_A SET and MYND domain-con 98.5 4.5E-07 1.5E-11 95.1 10.3 89 267-355 306-410 (433)
337 2b5x_A YKUV protein, TRXY; thi 98.5 5.4E-07 1.9E-11 79.7 9.4 84 628-711 28-143 (148)
338 3erw_A Sporulation thiol-disul 98.5 5.3E-07 1.8E-11 79.5 9.2 81 629-709 34-145 (145)
339 1pc2_A Mitochondria fission pr 98.4 1.9E-06 6.3E-11 74.6 11.8 88 274-362 13-105 (152)
340 3qww_A SET and MYND domain-con 98.4 1.1E-06 3.7E-11 92.2 12.2 89 459-556 310-411 (433)
341 3ira_A Conserved protein; meth 98.4 3.3E-07 1.1E-11 82.4 6.6 77 619-695 29-120 (173)
342 3ia1_A THIO-disulfide isomeras 98.4 7.6E-07 2.6E-11 79.5 9.1 82 630-712 31-143 (154)
343 3qcp_A QSOX from trypanosoma b 98.4 5.1E-07 1.7E-11 94.0 8.8 82 618-699 29-125 (470)
344 3f8u_A Protein disulfide-isome 98.4 5.6E-07 1.9E-11 97.1 9.6 94 618-712 358-460 (481)
345 2lja_A Putative thiol-disulfid 98.4 1.4E-06 4.9E-11 77.4 10.0 83 630-712 31-142 (152)
346 3raz_A Thioredoxin-related pro 98.4 1.9E-06 6.4E-11 76.6 10.4 84 629-712 24-139 (151)
347 2f9s_A Thiol-disulfide oxidore 98.4 1.4E-06 4.7E-11 77.5 9.5 83 629-711 26-136 (151)
348 3or5_A Thiol:disulfide interch 98.3 2.1E-06 7.3E-11 77.5 10.6 83 629-711 34-149 (165)
349 1hyu_A AHPF, alkyl hydroperoxi 98.3 1.7E-06 5.7E-11 94.0 11.5 79 629-711 117-198 (521)
350 3uem_A Protein disulfide-isome 98.3 9.4E-07 3.2E-11 91.4 9.1 93 618-712 255-356 (361)
351 2b5e_A Protein disulfide-isome 98.3 7.6E-07 2.6E-11 96.6 7.6 93 618-712 364-466 (504)
352 3gl3_A Putative thiol:disulfid 98.3 3.1E-06 1.1E-10 75.2 10.1 84 629-712 28-141 (152)
353 1ego_A Glutaredoxin; electron 98.3 1.7E-06 5.7E-11 68.2 7.3 72 632-710 2-81 (85)
354 3qwp_A SET and MYND domain-con 98.3 4.6E-06 1.6E-10 87.7 12.7 94 454-556 294-400 (429)
355 2h30_A Thioredoxin, peptide me 98.2 2E-06 6.7E-11 77.6 7.4 83 629-711 38-154 (164)
356 3apo_A DNAJ homolog subfamily 98.2 2.2E-06 7.5E-11 98.4 9.3 93 619-711 664-765 (780)
357 2hls_A Protein disulfide oxido 98.2 4.1E-06 1.4E-10 80.8 9.5 92 617-711 12-115 (243)
358 2lrn_A Thiol:disulfide interch 98.2 5.9E-06 2E-10 73.4 9.9 81 629-711 29-139 (152)
359 3lor_A Thiol-disulfide isomera 98.2 5.8E-06 2E-10 74.1 9.9 83 629-711 30-153 (160)
360 4evm_A Thioredoxin family prot 98.2 5.8E-06 2E-10 71.8 9.6 83 629-711 22-137 (138)
361 3hcz_A Possible thiol-disulfid 98.2 3.2E-06 1.1E-10 74.7 7.7 82 629-710 31-143 (148)
362 3fkf_A Thiol-disulfide oxidore 98.2 8.5E-06 2.9E-10 71.9 10.5 81 629-711 33-144 (148)
363 3eyt_A Uncharacterized protein 98.2 7.8E-06 2.7E-10 73.1 9.8 83 629-711 28-150 (158)
364 3hdc_A Thioredoxin family prot 98.2 8.5E-06 2.9E-10 72.9 10.0 82 629-710 41-149 (158)
365 2e7p_A Glutaredoxin; thioredox 98.1 2E-06 6.8E-11 72.5 5.5 75 632-711 21-106 (116)
366 2b1k_A Thiol:disulfide interch 98.1 3.6E-06 1.2E-10 76.3 7.5 82 628-711 50-158 (168)
367 2l5o_A Putative thioredoxin; s 98.1 5.7E-06 2E-10 73.5 8.6 83 629-711 28-139 (153)
368 1kng_A Thiol:disulfide interch 98.1 4.8E-06 1.6E-10 74.3 7.7 82 629-711 42-150 (156)
369 3ha9_A Uncharacterized thiored 98.1 1.4E-05 4.8E-10 72.1 10.3 82 629-712 37-163 (165)
370 2k8s_A Thioredoxin; dimer, str 98.1 2.8E-06 9.6E-11 66.0 4.8 69 632-704 3-77 (80)
371 3kcm_A Thioredoxin family prot 98.1 1.1E-05 3.9E-10 71.7 9.1 83 629-711 28-141 (154)
372 3kp9_A Vkorc1/thioredoxin doma 98.0 2.2E-06 7.5E-11 83.6 3.6 69 633-709 201-276 (291)
373 4g26_A Pentatricopeptide repea 98.0 0.00036 1.2E-08 75.0 20.8 162 262-431 29-203 (501)
374 4g26_A Pentatricopeptide repea 98.0 0.00026 8.8E-09 76.1 19.7 162 374-557 32-205 (501)
375 3fw2_A Thiol-disulfide oxidore 98.0 3.1E-05 1.1E-09 68.5 10.2 80 630-711 34-146 (150)
376 3lwa_A Secreted thiol-disulfid 98.0 1.7E-05 5.7E-10 73.0 8.3 82 630-711 60-179 (183)
377 2lrt_A Uncharacterized protein 97.9 3.5E-05 1.2E-09 68.3 9.4 79 630-708 36-143 (152)
378 3eur_A Uncharacterized protein 97.9 3.1E-05 1E-09 67.8 8.8 79 630-710 32-142 (142)
379 3uem_A Protein disulfide-isome 97.9 4.8E-05 1.7E-09 78.4 11.7 92 620-711 125-228 (361)
380 3ewl_A Uncharacterized conserv 97.9 2.9E-05 9.8E-10 67.9 8.5 82 629-712 27-140 (142)
381 1h75_A Glutaredoxin-like prote 97.9 1.5E-05 5E-10 62.0 5.6 70 632-711 2-76 (81)
382 1r7h_A NRDH-redoxin; thioredox 97.9 3.9E-05 1.3E-09 58.5 7.7 67 633-709 3-74 (75)
383 3kh7_A Thiol:disulfide interch 97.9 4E-05 1.4E-09 69.8 9.0 81 629-711 58-165 (176)
384 2ywi_A Hypothetical conserved 97.8 3.1E-05 1.1E-09 72.0 7.8 80 632-711 49-172 (196)
385 1nzn_A CGI-135 protein, fissio 97.8 0.00015 5.2E-09 60.2 10.9 93 461-565 15-112 (126)
386 2cvb_A Probable thiol-disulfid 97.8 4.1E-05 1.4E-09 70.7 8.4 82 630-711 34-157 (188)
387 2hyx_A Protein DIPZ; thioredox 97.8 4.4E-05 1.5E-09 77.3 8.7 83 629-711 82-197 (352)
388 1o8x_A Tryparedoxin, TRYX, TXN 97.8 5.6E-05 1.9E-09 66.4 7.7 70 629-698 28-128 (146)
389 3gyk_A 27KDA outer membrane pr 97.7 8.8E-05 3E-09 67.5 8.8 77 630-711 23-171 (175)
390 1i5g_A Tryparedoxin II; electr 97.7 6.8E-05 2.3E-09 65.7 7.7 69 629-697 28-127 (144)
391 1o73_A Tryparedoxin; electron 97.7 6.6E-05 2.2E-09 65.7 7.6 69 629-697 28-127 (144)
392 2dlx_A UBX domain-containing p 97.7 0.00014 4.7E-09 63.9 9.4 84 628-711 41-134 (153)
393 1nzn_A CGI-135 protein, fissio 97.7 0.00032 1.1E-08 58.3 11.0 92 270-362 12-108 (126)
394 4fo5_A Thioredoxin-like protei 97.7 0.00014 4.9E-09 63.5 9.6 79 630-710 33-142 (143)
395 3s9f_A Tryparedoxin; thioredox 97.7 8.1E-05 2.8E-09 66.9 7.9 69 629-697 48-147 (165)
396 4h7y_A Dual specificity protei 97.7 0.00066 2.3E-08 57.5 12.6 107 254-362 8-128 (161)
397 2rli_A SCO2 protein homolog, m 97.7 0.00011 3.8E-09 66.4 8.6 82 630-711 27-162 (171)
398 1kte_A Thioltransferase; redox 97.7 5.1E-05 1.8E-09 62.3 5.7 76 632-711 13-101 (105)
399 1jfu_A Thiol:disulfide interch 97.6 0.00021 7.2E-09 65.6 10.1 82 630-711 61-178 (186)
400 2ls5_A Uncharacterized protein 96.8 8.3E-06 2.9E-10 73.0 0.0 82 630-711 34-146 (159)
401 2ggt_A SCO1 protein homolog, m 97.6 0.00018 6.2E-09 64.5 8.7 82 630-711 24-159 (164)
402 2k6v_A Putative cytochrome C o 97.5 0.00027 9.2E-09 63.9 9.1 82 630-711 36-171 (172)
403 3ffl_A Anaphase-promoting comp 97.5 0.00076 2.6E-08 58.6 11.0 95 260-354 21-149 (167)
404 3u5r_E Uncharacterized protein 97.5 0.00022 7.6E-09 67.4 8.3 80 632-711 62-185 (218)
405 4h7y_A Dual specificity protei 97.5 0.0013 4.5E-08 55.7 11.2 114 322-436 8-127 (161)
406 2hze_A Glutaredoxin-1; thiored 97.4 5E-05 1.7E-09 63.4 2.5 77 631-711 19-108 (114)
407 3ffl_A Anaphase-promoting comp 97.4 0.00079 2.7E-08 58.5 9.9 136 294-457 21-165 (167)
408 2cq9_A GLRX2 protein, glutared 97.4 0.00018 6.1E-09 61.6 5.7 83 620-711 18-113 (130)
409 2vup_A Glutathione peroxidase- 97.4 0.00045 1.5E-08 63.7 9.0 83 629-711 48-183 (190)
410 1t3b_A Thiol:disulfide interch 97.4 0.00024 8.3E-09 66.6 7.0 77 630-712 87-210 (211)
411 2lus_A Thioredoxion; CR-Trp16, 96.5 2.5E-05 8.6E-10 68.3 0.0 66 631-696 28-125 (143)
412 1eej_A Thiol:disulfide interch 97.3 0.00031 1E-08 66.2 6.8 76 630-711 87-209 (216)
413 3ic4_A Glutaredoxin (GRX-1); s 97.3 0.00045 1.5E-08 54.9 6.6 68 632-709 13-91 (92)
414 3drn_A Peroxiredoxin, bacterio 97.3 0.00091 3.1E-08 59.7 9.2 79 632-710 32-146 (161)
415 1we0_A Alkyl hydroperoxide red 97.3 0.00039 1.3E-08 63.9 6.8 82 630-711 32-155 (187)
416 2bmx_A Alkyl hydroperoxidase C 97.3 0.00057 2E-08 63.2 7.8 82 630-711 46-168 (195)
417 2ht9_A Glutaredoxin-2; thiored 97.2 0.00029 9.9E-09 61.4 5.2 83 620-711 40-135 (146)
418 1xvw_A Hypothetical protein RV 97.2 0.00094 3.2E-08 59.5 8.4 81 631-711 38-158 (160)
419 3o48_A Mitochondria fission 1 97.2 0.0024 8.2E-08 53.1 9.6 78 258-335 39-120 (134)
420 1v58_A Thiol:disulfide interch 97.1 0.0014 4.8E-08 62.8 9.1 79 631-711 99-231 (241)
421 1y8m_A FIS1; mitochondria, unk 97.1 0.0056 1.9E-07 51.6 11.3 79 257-335 37-119 (144)
422 2l4c_A Endoplasmic reticulum r 97.1 0.0057 1.9E-07 51.3 11.6 93 612-711 22-122 (124)
423 3cmi_A Peroxiredoxin HYR1; thi 97.1 0.00081 2.8E-08 60.7 6.8 82 629-711 32-166 (171)
424 1zof_A Alkyl hydroperoxide-red 97.1 0.00077 2.6E-08 62.5 6.7 82 630-711 34-159 (198)
425 2lqo_A Putative glutaredoxin R 97.0 0.0027 9.2E-08 50.0 8.5 73 631-712 4-83 (92)
426 2p31_A CL683, glutathione pero 97.0 0.00093 3.2E-08 60.9 6.6 83 630-712 50-180 (181)
427 3kae_A CDC27, possible protein 97.0 0.056 1.9E-06 46.5 16.3 175 254-434 28-239 (242)
428 3o48_A Mitochondria fission 1 96.9 0.0058 2E-07 50.8 9.4 68 498-565 45-116 (134)
429 3c1r_A Glutaredoxin-1; oxidize 96.9 0.00042 1.4E-08 58.0 2.6 68 621-694 17-94 (118)
430 2p5q_A Glutathione peroxidase 96.9 0.0017 6E-08 58.3 7.0 83 629-711 32-166 (170)
431 2klx_A Glutaredoxin; thioredox 96.8 0.0011 3.8E-08 52.2 4.7 56 632-694 7-67 (89)
432 3qmx_A Glutaredoxin A, glutare 96.8 0.0031 1E-07 50.7 7.2 59 629-694 14-79 (99)
433 3txn_A 26S proteasome regulato 96.8 0.14 4.7E-06 52.3 21.0 170 260-430 20-208 (394)
434 1uul_A Tryparedoxin peroxidase 96.8 0.003 1E-07 58.7 8.1 82 630-711 37-163 (202)
435 3dwv_A Glutathione peroxidase- 96.8 0.0025 8.7E-08 58.3 7.5 82 630-711 47-181 (187)
436 1zye_A Thioredoxin-dependent p 96.8 0.0034 1.2E-07 59.2 8.4 82 630-711 57-183 (220)
437 3kae_A CDC27, possible protein 96.8 0.2 6.9E-06 43.1 17.9 115 446-560 113-241 (242)
438 2v1m_A Glutathione peroxidase; 96.8 0.0037 1.3E-07 56.0 8.3 82 630-711 32-165 (169)
439 3h93_A Thiol:disulfide interch 96.7 0.0032 1.1E-07 57.9 8.0 81 629-711 25-182 (192)
440 1y8m_A FIS1; mitochondria, unk 96.7 0.037 1.2E-06 46.7 13.2 68 498-565 44-115 (144)
441 2obi_A PHGPX, GPX-4, phospholi 96.7 0.0029 9.8E-08 57.8 7.3 82 630-711 48-182 (183)
442 4f9z_D Endoplasmic reticulum r 96.7 0.017 6E-07 54.5 12.9 94 619-712 120-224 (227)
443 1qsa_A Protein (soluble lytic 96.7 0.12 4E-06 56.4 20.9 242 271-555 84-347 (618)
444 2h01_A 2-Cys peroxiredoxin; th 96.7 0.0033 1.1E-07 57.8 7.5 82 630-711 32-157 (192)
445 2b7k_A SCO1 protein; metalloch 96.6 0.0049 1.7E-07 57.1 8.3 82 629-710 41-176 (200)
446 3mkq_A Coatomer beta'-subunit; 96.6 0.1 3.5E-06 59.7 21.1 48 303-355 662-709 (814)
447 3nzn_A Glutaredoxin; structura 96.6 0.0084 2.9E-07 48.6 8.5 71 630-709 21-102 (103)
448 2yan_A Glutaredoxin-3; oxidore 96.5 0.0068 2.3E-07 49.3 7.6 66 621-694 9-84 (105)
449 1qmv_A Human thioredoxin perox 96.5 0.0064 2.2E-07 56.1 8.3 82 630-711 35-161 (197)
450 3gv1_A Disulfide interchange p 96.5 0.0044 1.5E-07 53.9 6.5 39 670-712 99-138 (147)
451 1fov_A Glutaredoxin 3, GRX3; a 96.5 0.0092 3.1E-07 45.8 7.8 66 633-710 3-74 (82)
452 2i81_A 2-Cys peroxiredoxin; st 96.5 0.0071 2.4E-07 56.6 8.4 82 630-711 53-178 (213)
453 3mkq_B Coatomer subunit alpha; 96.4 0.15 5E-06 45.2 15.6 47 304-355 16-62 (177)
454 3rhb_A ATGRXC5, glutaredoxin-C 96.4 0.0036 1.2E-07 51.8 5.0 66 621-695 11-86 (113)
455 3kij_A Probable glutathione pe 96.3 0.0053 1.8E-07 55.8 6.4 82 630-711 39-168 (180)
456 1xvq_A Thiol peroxidase; thior 96.3 0.0075 2.6E-07 54.4 7.2 80 630-710 45-162 (175)
457 3hd5_A Thiol:disulfide interch 96.3 0.013 4.3E-07 54.0 8.7 38 630-667 26-66 (195)
458 3txn_A 26S proteasome regulato 96.3 0.14 4.6E-06 52.3 16.8 125 407-543 103-236 (394)
459 2f8a_A Glutathione peroxidase 96.2 0.011 3.8E-07 55.0 8.1 38 630-667 48-89 (208)
460 3mkq_A Coatomer beta'-subunit; 96.2 0.092 3.1E-06 60.1 17.2 129 269-420 662-800 (814)
461 2jsy_A Probable thiol peroxida 96.1 0.021 7.3E-07 50.8 9.3 83 629-711 44-165 (167)
462 2gs3_A PHGPX, GPX-4, phospholi 96.1 0.011 3.7E-07 53.9 7.0 82 630-711 50-184 (185)
463 2ff4_A Probable regulatory pro 95.9 0.089 3E-06 54.1 14.0 94 262-355 118-233 (388)
464 2khp_A Glutaredoxin; thioredox 95.9 0.015 5.1E-07 45.8 6.3 56 632-694 7-68 (92)
465 3ztl_A Thioredoxin peroxidase; 95.9 0.026 8.8E-07 53.1 8.9 81 630-710 70-195 (222)
466 4gns_B Protein CSD3, chitin bi 95.8 0.033 1.1E-06 61.7 10.4 60 294-353 338-397 (754)
467 1z6m_A Conserved hypothetical 95.7 0.033 1.1E-06 50.1 8.8 37 630-666 28-69 (175)
468 3bj5_A Protein disulfide-isome 95.6 0.15 5.1E-06 44.1 11.8 92 621-712 23-126 (147)
469 2a4v_A Peroxiredoxin DOT5; yea 95.5 0.058 2E-06 47.5 9.2 67 631-699 37-136 (159)
470 3ctg_A Glutaredoxin-2; reduced 95.5 0.011 3.6E-07 50.2 4.0 69 620-694 28-106 (129)
471 3mkq_B Coatomer subunit alpha; 95.4 0.21 7.2E-06 44.2 12.2 104 374-518 11-114 (177)
472 1xzo_A BSSCO, hypothetical pro 95.3 0.029 1E-06 50.3 6.9 83 630-712 34-171 (174)
473 3gkn_A Bacterioferritin comigr 95.2 0.07 2.4E-06 47.2 9.0 82 630-711 36-160 (163)
474 3msz_A Glutaredoxin 1; alpha-b 95.2 0.037 1.3E-06 43.1 6.2 69 631-709 4-83 (89)
475 4f9z_D Endoplasmic reticulum r 95.2 0.094 3.2E-06 49.4 10.2 99 608-711 6-110 (227)
476 2ff4_A Probable regulatory pro 95.1 0.42 1.4E-05 49.0 15.7 126 453-584 121-263 (388)
477 4gns_B Protein CSD3, chitin bi 95.1 0.14 4.6E-06 56.9 12.4 122 384-519 265-397 (754)
478 4b4t_P 26S proteasome regulato 95.1 1.3 4.4E-05 46.3 19.5 107 404-522 138-247 (445)
479 2rem_A Disulfide oxidoreductas 95.1 0.12 4.1E-06 47.2 10.4 36 631-666 27-65 (193)
480 1ya0_A SMG-7 transcript varian 94.9 0.13 4.3E-06 54.4 11.1 79 261-339 154-232 (497)
481 2znm_A Thiol:disulfide interch 94.8 0.08 2.7E-06 48.5 8.4 37 630-666 23-62 (195)
482 3a2v_A Probable peroxiredoxin; 94.6 0.074 2.5E-06 50.6 7.6 77 635-711 40-160 (249)
483 3h8q_A Thioredoxin reductase 3 94.6 0.062 2.1E-06 44.2 6.2 66 620-694 8-82 (114)
484 1zbp_A Hypothetical protein VP 94.5 0.26 8.9E-06 46.6 10.8 61 268-328 6-66 (273)
485 1wik_A Thioredoxin-like protei 94.5 0.076 2.6E-06 43.3 6.5 66 621-694 7-82 (109)
486 1zbp_A Hypothetical protein VP 94.2 1 3.4E-05 42.6 14.1 60 302-362 6-65 (273)
487 2axo_A Hypothetical protein AT 94.1 0.29 9.8E-06 46.7 10.3 76 631-711 44-141 (270)
488 4dvc_A Thiol:disulfide interch 94.0 0.061 2.1E-06 48.7 5.4 36 630-665 22-60 (184)
489 1ya0_A SMG-7 transcript varian 93.9 0.32 1.1E-05 51.3 11.5 80 449-540 154-233 (497)
490 4b4t_P 26S proteasome regulato 93.7 7.7 0.00026 40.3 24.4 169 259-430 56-245 (445)
491 4b4t_R RPN7, 26S proteasome re 93.5 0.42 1.5E-05 49.8 11.5 96 260-355 132-236 (429)
492 3spa_A Mtrpol, DNA-directed RN 93.3 2.3 7.9E-05 48.4 17.3 97 447-557 127-231 (1134)
493 3l4n_A Monothiol glutaredoxin- 93.1 0.13 4.4E-06 43.1 5.5 71 620-694 5-82 (127)
494 2c0d_A Thioredoxin peroxidase 93.1 0.24 8.4E-06 46.2 8.1 82 630-711 57-182 (221)
495 3me7_A Putative uncharacterize 93.1 0.34 1.2E-05 43.0 8.7 84 629-712 28-161 (170)
496 1sji_A Calsequestrin 2, calseq 93.0 0.48 1.7E-05 47.9 10.8 97 610-711 122-223 (350)
497 2h8l_A Protein disulfide-isome 92.9 0.67 2.3E-05 44.2 11.1 98 609-711 4-111 (252)
498 4b4t_S RPN3, 26S proteasome re 92.5 0.11 3.8E-06 54.3 5.2 77 400-481 228-304 (523)
499 3spa_A Mtrpol, DNA-directed RN 92.3 1.5 5.2E-05 49.8 14.1 101 260-361 128-236 (1134)
500 4fhn_B Nucleoporin NUP120; pro 92.2 1.1 3.7E-05 53.3 13.8 100 254-353 837-964 (1139)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.7e-37 Score=324.24 Aligned_cols=351 Identities=18% Similarity=0.143 Sum_probs=326.8
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
++|+..|+++++.+|+.. . ....+|.++...+ ++|..+++. .+|.++.+++.+|.++...|++++|+.+
T Consensus 16 ~~A~~~~~~~~~~~p~~~--~----~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 16 EAAERHCMQLWRQEPDNT--G----VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HHHHHHHHHHHHHCTTCH--H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCH--H----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 499999999999998532 2 3345788888777 567777776 8999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 282 YDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 282 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|++++. .+|++
T Consensus 90 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~ 168 (388)
T 1w3b_A 90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE-TQPNF 168 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH-HCTTC
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhh
Q 005125 362 IAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLF 441 (713)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 441 (713)
. ..+..++..+...|++++|+..|++++..+|+.. .++..+|.++...|++++|+..|++++...|+
T Consensus 169 ~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------ 235 (388)
T 1w3b_A 169 A------VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL-DAYINLGNVLKEARIFDRAVAAYLRALSLSPN------ 235 (388)
T ss_dssp H------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT------
T ss_pred H------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------
Confidence 4 5677889999999999999999999999999985 88999999999999999999999999999885
Q ss_pred cccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 442 GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 442 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
++.++..+|.+|...|++++|+..|+++++++|+++.++. ++|.++...|++++|+..|+++++
T Consensus 236 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 236 ----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC------------NLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH------------HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4668899999999999999999999999999999999887 799999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 522 HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRAL 589 (713)
Q Consensus 522 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l 589 (713)
..|.++.++.++|.++...|++++|+..|+++++++|++..++. ++|+..|+++++++|++..+...+
T Consensus 300 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 99999999999999999999999999999999999999988776 899999999999999999988887
Q ss_pred HHHH
Q 005125 590 FEAQ 593 (713)
Q Consensus 590 ~~~~ 593 (713)
..+.
T Consensus 380 g~~~ 383 (388)
T 1w3b_A 380 GNTL 383 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.9e-34 Score=305.84 Aligned_cols=328 Identities=17% Similarity=0.116 Sum_probs=306.1
Q ss_pred hhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005125 236 MGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQI 310 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 310 (713)
+|..+.+.| ++|...+.. ..|+++.++..+|.++...|++++|+.+++++++.+|.++.++..+|.++...|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 445555555 567777766 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 005125 311 EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKE 390 (713)
Q Consensus 311 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 390 (713)
+|+..|++++.++|++..++..+|.++...|++++|+..|++++. .+|+.. ..+..++..+...|++++|+..
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~------~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-YNPDLY------CVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-HCTTCT------HHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcH------HHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999999999999999999999999999999999999 999874 5667788899999999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 391 TQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470 (713)
Q Consensus 391 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 470 (713)
|++++...|+.. .++..+|.++...|++++|+..|++++.+.|+ ...++..+|.++...|++++|+..|
T Consensus 158 ~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 158 YLKAIETQPNFA-VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN----------FLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp HHHHHHHCTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999985 89999999999999999999999999999885 4568999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 471 QDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDC 550 (713)
Q Consensus 471 ~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 550 (713)
++++.++|++..++. ++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|
T Consensus 227 ~~al~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 227 LRALSLSPNHAVVHG------------NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp HHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHhhCcCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998887 69999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 551 TAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 551 ~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
+++++++|++..++. ++|+..|+++++++|++..+...+....
T Consensus 295 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999999999988876 8999999999999999998887776554
No 3
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.1e-32 Score=288.22 Aligned_cols=330 Identities=17% Similarity=0.247 Sum_probs=304.2
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
+++.++.+|..++..|++++|+.+|+++++.+|.++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhcc---ccHHHHHHH------HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQ---KDIAKAEAL------HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYAL 408 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p---~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 408 (713)
...|++++|+..|++++. .+| .+......+ ......+..+...|++++|+..+++++...|.+. .++..
T Consensus 82 ~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLK-SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA-ELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHH
T ss_pred HHcCChHHHHHHHHHHHh-cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch-HHHHH
Confidence 999999999999999999 999 665433222 2345568889999999999999999999999885 89999
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 488 (713)
+|.++...|++++|+..+++++...|+ .+.++..+|.++...|++++|+..|+++++..|++..++..+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSD----------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSC----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 999999999999999999999999885 5668999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV----LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 489 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.+..+.....+|.++...|++++|+..|+++++..|+++. ++..+|.++..+|++++|+..|+++++.+|+++.++
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 309 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence 7777777788999999999999999999999999999874 467899999999999999999999999999999887
Q ss_pred H------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 005125 565 L------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQ 599 (713)
Q Consensus 565 ~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 599 (713)
. ++|+..|+++++++|++..+...+..+...+++.
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 7 9999999999999999999999999888777654
No 4
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.1e-32 Score=293.80 Aligned_cols=334 Identities=17% Similarity=0.236 Sum_probs=305.1
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+|.++..++.+|..++..|++++|+.+|+++++.+|.++.+++.+|.++...|++++|+..|+++++++|++..++..+
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 45667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH---HHHHHH------HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI---AKAEAL------HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQ 404 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~---~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 404 (713)
|.+|..+|++++|+.+|++++. .+|.+. .....+ ...+..+..+...|++++|+..+++++...|.+. .
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLK-SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA-E 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-H
Confidence 9999999999999999999999 999876 333222 2345668889999999999999999999999885 8
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 484 (713)
++..+|.+|...|++++|+.+|++++...|+ .+.++..+|.+|...|++++|+..|++++..+|++...+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 248 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKND----------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 248 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH
Confidence 8999999999999999999999999987764 567899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS----VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
..+..+........+|.++...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..++++++++|++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 328 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8777777777777889999999999999999999999999984 478999999999999999999999999999999
Q ss_pred hHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 005125 561 SKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQ 599 (713)
Q Consensus 561 ~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 599 (713)
..++. ++|+..|+++++++|++..+...+..+...++..
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence 98877 9999999999999999999999988877766654
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.7e-31 Score=285.46 Aligned_cols=336 Identities=15% Similarity=0.077 Sum_probs=283.1
Q ss_pred HHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 005125 208 KTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALY 282 (713)
Q Consensus 208 ~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 282 (713)
.+...+.+++..+|. ... ....+|..+...+ ++|...++. ..|.++.+++.+|.++...|++++|+.+|
T Consensus 10 ~~~~~~~~~~~~~p~--~~~----~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 10 GVDLGTENLYFQSMA--DVE----KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp -------------CH--HHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccccccHH--HHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 556677788888863 223 3345788888888 668888887 78999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHH
Q 005125 283 DRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH---RAHHRL------------AMLYFRLGEAEKAV 347 (713)
Q Consensus 283 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~ 347 (713)
+++++.+|++..++..+|.+|..+|++++|+..|++++.++|++. .++..+ |.++...|++++|+
T Consensus 84 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 84 TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999988 776655 66799999999999
Q ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhh
Q 005125 348 SHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYN 427 (713)
Q Consensus 348 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 427 (713)
.+|++++. ..|.+. ..+..++..+...|++++|+..+++++..+|.+. .++..+|.+|...|++++|+.+|+
T Consensus 164 ~~~~~~~~-~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 164 AFLDKILE-VCVWDA------ELRELRAECFIKEGEPRKAISDLKAASKLKNDNT-EAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHH-HCTTCH------HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH-HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCh------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999 999874 5678889999999999999999999999999885 899999999999999999999999
Q ss_pred ccccCChhhHHhhhcc--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 428 KSPKFCLEYYTKLFGL--AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 428 ~al~~~~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
+++...|+....+... ......+..+|.++...|++++|+.+|++++.+.|+++..+. ..+..+|.++..
T Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--------~~~~~l~~~~~~ 307 (450)
T 2y4t_A 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV--------RSKERICHCFSK 307 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHH--------HHHHHHHHHHHT
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHH--------HHHHHHHHHHHH
Confidence 9999888654321100 001112344599999999999999999999999999876432 223479999999
Q ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..++.
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 367 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIRE 367 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988765
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-30 Score=291.89 Aligned_cols=348 Identities=12% Similarity=0.063 Sum_probs=290.4
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhhcCCCC-------------------HHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISSLNKLD-------------------PEELKFM 265 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~~~~~~-------------------~~~~~~l 265 (713)
++|+..|++++...+++. ....++.++...| ++|...+++..|.. +.+|+.+
T Consensus 134 ~~A~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 134 ARAKCLLTKEDLYNRSSA-------CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR 206 (597)
T ss_dssp HHHHHHHHHTCGGGTCHH-------HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchh-------HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHH
Confidence 489999999876543321 3345788888888 67888888766665 8899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHH--------------------------------------------------
Q 005125 266 GNEAYNKARFEDALALYDRAIAINSSKATY-------------------------------------------------- 295 (713)
Q Consensus 266 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------------------------------------- 295 (713)
|..|...|++++|+.+|+++++.+|.+..+
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 999999999999999999999988865444
Q ss_pred ---------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005125 296 ---------------------RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSS 354 (713)
Q Consensus 296 ---------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 354 (713)
+..+|.+|...|++++|+..|+++++.+|++..++..++.++...|++++|+..|++++
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44556666666777777777777777777666667777777777777777777777766
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCCh
Q 005125 355 SLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCL 434 (713)
Q Consensus 355 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 434 (713)
. ..|.+. ..+..++..+...|++++|+..|+++++..|.+. .+|..+|.+|...|++++|+.+|++++...|
T Consensus 367 ~-~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 367 D-RHPEKA------VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG-PAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438 (597)
T ss_dssp H-HCTTSH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred h-hCcccH------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 6 666653 5566778888999999999999999999998875 7888899999999999999999999988877
Q ss_pred hhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Q 005125 435 EYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACY 514 (713)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 514 (713)
+ +..++..+|.+|...|++++|+.+|+++++..|.++..+. .+|.++...|++++|+.
T Consensus 439 ~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 439 G----------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN------------ELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp T----------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHTTCHHHHHH
T ss_pred c----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHhCCHHHHHH
Confidence 4 4568888999999999999999999999999999988877 69999999999999999
Q ss_pred HHHHHhcc------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHH
Q 005125 515 AYSEGLEH------EAYN-SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEML 575 (713)
Q Consensus 515 ~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~a 575 (713)
.|+++++. +|+. ..+|..+|.+|...|++++|+..|+++++++|++..++. ++|+..|+++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999988 5654 789999999999999999999999999999999988876 9999999999
Q ss_pred HHhCCCCHHHHHHHHH
Q 005125 576 IREIPGNEEVGRALFE 591 (713)
Q Consensus 576 l~~~p~~~~~~~~l~~ 591 (713)
++++|++..+...+..
T Consensus 577 l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 577 LAISPNEIMASDLLKR 592 (597)
T ss_dssp HHHCTTCHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHH
Confidence 9999999998877654
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=5.8e-30 Score=267.36 Aligned_cols=315 Identities=17% Similarity=0.101 Sum_probs=280.2
Q ss_pred chhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005125 235 VMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQ 309 (713)
Q Consensus 235 ~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 309 (713)
.+|.++...| ++|...+++ ..|.++.+++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCh
Confidence 3666666666 557777776 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Q 005125 310 IEALVECKEAIRIDP---CYHRAHHRL------------AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTK 374 (713)
Q Consensus 310 ~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~ 374 (713)
++|+..|+++++++| ++..++..+ |.++...|++++|+.+|++++. ..|.+. ..+..+
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~------~~~~~~ 160 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE-VCVWDA------ELRELR 160 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH------HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCch------HHHHHH
Confidence 999999999999999 888888877 7999999999999999999999 999884 567888
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhc--ccCcHHHHHH
Q 005125 375 CNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFG--LAGGAYLLIV 452 (713)
Q Consensus 375 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~~~ 452 (713)
+..+...|++++|+..+++++...|.+. .++..+|.++...|++++|+..|++++...|+....+.. ..........
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNT-EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 899999999999999999999999999988875442210 0011223446
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHH
Q 005125 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCN 532 (713)
Q Consensus 453 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 532 (713)
+|.++...|++++|+..|++++...|+++..+. ..+..+|.++...|++++|+..|+++++.+|+++.++..
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTV--------RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD 311 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH--------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 699999999999999999999999999876543 223469999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 533 RAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 533 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+|.++..+|++++|+..|+++++++|++..++.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 999999999999999999999999999988766
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-31 Score=290.91 Aligned_cols=348 Identities=14% Similarity=0.087 Sum_probs=313.4
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
++|+.+|++++..+|++ . ....+|.++...| ++|...+++ ..|.++.+++.+|.++...|++++|+..
T Consensus 23 ~~A~~~~~~al~~~p~~---~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 23 DDAIKYYNWALELKEDP---V----FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HHHHHHHHHHHHHCCCH---H----HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCccH---H----HHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 49999999999999742 2 3345888988888 668888887 8999999999999999999999999999
Q ss_pred HHHHHHhCCCC---------------------------------------------------------------------
Q 005125 282 YDRAIAINSSK--------------------------------------------------------------------- 292 (713)
Q Consensus 282 ~~~al~~~p~~--------------------------------------------------------------------- 292 (713)
|++++..+|.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 99999888632
Q ss_pred ----------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHcCCHHH
Q 005125 293 ----------ATYRSNKSAALIG---LGRQIEALVECKEAIR-----I--D-------PCYHRAHHRLAMLYFRLGEAEK 345 (713)
Q Consensus 293 ----------~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~ 345 (713)
...+..+|.++.. .|++++|+..|++++. + + |.+..++..+|.++...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 6677888888876 8999999999999999 6 3 4557899999999999999999
Q ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHH
Q 005125 346 AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDS 425 (713)
Q Consensus 346 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 425 (713)
|+..|++++. .+|. . ..+..++..+...|++++|+..+++++...|.+. .++..+|.++...|++++|+.+
T Consensus 256 A~~~~~~~l~-~~~~-~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 256 AHEDIKKAIE-LFPR-V------NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS-SVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp HHHHHHHHHH-HCCC-H------HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT-HHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHh-hCcc-H------HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH-HHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999 8887 3 5677889999999999999999999999999886 7899999999999999999999
Q ss_pred hhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 426 YNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 426 ~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
|++++...|+ ...++..+|.++...|++++|+.+|+++++..|++..++. .+|.++..
T Consensus 327 ~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~la~~~~~ 384 (514)
T 2gw1_A 327 FDKAKELDPE----------NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPN------------FFAEILTD 384 (514)
T ss_dssp HHHHHHTCSS----------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHH------------HHHHHHHH
T ss_pred HHHHHHhChh----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHH------------HHHHHHHH
Confidence 9999998885 4558899999999999999999999999999999998887 69999999
Q ss_pred cccHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHH-----------
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSV------LLCNRAACRSK---LGQYEKAVEDCTAALIVMPSYSKARL----------- 565 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~----------- 565 (713)
.|++++|+..|++++...|++.. ++..+|.++.. .|++++|+..|+++++++|++..++.
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 99999999999999999988755 99999999999 99999999999999999999988876
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 566 -EAAIQDYEMLIREIPGNEEVGRALFEA 592 (713)
Q Consensus 566 -~~A~~~~~~al~~~p~~~~~~~~l~~~ 592 (713)
++|+..|+++++++|++.++...+...
T Consensus 465 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 465 IDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999999999999988766443
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.2e-29 Score=284.88 Aligned_cols=328 Identities=13% Similarity=0.060 Sum_probs=292.0
Q ss_pred hhHHHHHHHhhhhcCCCcccccccccc----------------------------------ccchhhhhcCCC--Cchhh
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGR----------------------------------NGVMGNIVKQPS--GEFPQ 249 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~----------------------------------~~~lg~~~~~~~--~~a~~ 249 (713)
.++|+..|+++++.+|... ..+... ...++..+...+ ++|..
T Consensus 216 ~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVDAKCY--EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCH--HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhh--HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 3599999999999998422 211100 011244444445 56888
Q ss_pred hHhh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 250 CISS--LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH 327 (713)
Q Consensus 250 ~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 327 (713)
.++. ..|.++.++..+|..+...|++++|+.+|+++++.+|.+..++..++.++...|++++|+..+++++...|++.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 373 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA 373 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH
Confidence 8887 22689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 005125 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA 407 (713)
Q Consensus 328 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 407 (713)
.++..+|.+|...|++++|+.+|+++++ ++|.+. ..+..++..+...|++++|+..|++++...|++. .++.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~ 445 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSST-MDPQFG------PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH-LPYL 445 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS-HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-HHHH
Confidence 9999999999999999999999999999 999874 5677889999999999999999999999999875 7899
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI------DPNN- 480 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~- 480 (713)
.+|.+|...|++++|+.+|++++...|+ ++.++..+|.+|...|++++|+.+|+++++. +|++
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQY----------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 9999999999999999999999988774 5668999999999999999999999999998 5554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 481 KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
..++. .+|.++...|++++|+..|+++++.+|+++.+|..+|.+|...|++++|+..|+++++++|++
T Consensus 516 ~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 516 AATWA------------NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 45555 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHH
Q 005125 561 SKARL 565 (713)
Q Consensus 561 ~~a~~ 565 (713)
..++.
T Consensus 584 ~~~~~ 588 (597)
T 2xpi_A 584 IMASD 588 (597)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 88776
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=262.21 Aligned_cols=283 Identities=13% Similarity=0.084 Sum_probs=263.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
.+.+++.+..+|..++..|++++|+.+|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 35666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcC-CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 335 MLYFRLG-EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 335 ~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
.++...| ++++|+.+|++++. .+|.+. ..+..++..+...|++++|+..+++++...|... ..+..+|.+|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~ 169 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATT-LEKTYG------PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH-LPMLYIGLEY 169 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHT-TCTTCT------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS-HHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHH-hCCccH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH-HHHHHHHHHH
Confidence 9999999 99999999999999 999874 5678889999999999999999999999999876 7788899999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID---------PNNKEVI 484 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~ 484 (713)
...|++++|+.+|++++...|+ ++.++..+|.++...|++++|+.+|++++... |....++
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAPE----------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHH
Confidence 9999999999999999999885 46689999999999999999999999999986 5556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
. .+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+.+|+++++++|++..++
T Consensus 240 ~------------~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 240 N------------NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp H------------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred H------------HHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 6 6999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred HHH
Q 005125 565 LEA 567 (713)
Q Consensus 565 ~~~ 567 (713)
...
T Consensus 308 ~~l 310 (330)
T 3hym_B 308 TML 310 (330)
T ss_dssp HHH
T ss_pred HHH
Confidence 633
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=2.5e-29 Score=278.44 Aligned_cols=339 Identities=17% Similarity=0.133 Sum_probs=287.8
Q ss_pred cccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 232 RNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGL 306 (713)
Q Consensus 232 ~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 306 (713)
....+|..+...+ ++|+..+++ .+|.++.++..+|.++...|++++|+..|+++++.+|++..+++.+|.++..+
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 3445888888888 678888888 88999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH--------------------------------------------------------
Q 005125 307 GRQIEALVECKEAIRIDPCYHRAH-------------------------------------------------------- 330 (713)
Q Consensus 307 g~~~~A~~~~~~al~~~p~~~~~~-------------------------------------------------------- 330 (713)
|++++|+..|+ ++.++|+....+
T Consensus 107 g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 107 GNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp TCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred CCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 99999999995 777766543321
Q ss_pred ------------HHH--------HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHH-HHHHHHHHHHHHHHhhcHHHHHH
Q 005125 331 ------------HRL--------AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE-ALHKHLTKCNEARELKRWNDLLK 389 (713)
Q Consensus 331 ------------~~l--------a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~ 389 (713)
..+ +......|++++|+..|++++. .+|++..... ....+..++..+...|++++|+.
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS-ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 111 1222233588999999999999 9998865333 34467888899999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 390 ETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKT 469 (713)
Q Consensus 390 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 469 (713)
.+++++..+|+ +.++..+|.++...|++++|+.+|++++...|+ .+.++..+|.++...|++++|+..
T Consensus 265 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 265 LLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE----------YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC----------CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999998 589999999999999999999999999998885 566899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 470 AQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED 549 (713)
Q Consensus 470 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 549 (713)
|++++..+|++..++. .+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 333 ~~~a~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYI------------QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHHCTTCSHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999998887 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChH----------------------------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005125 550 CTAALIVMPSYSK----------------------------ARLEAAIQDYEMLIREIPGNEEVGRALFEAQVQL 596 (713)
Q Consensus 550 ~~~al~~~p~~~~----------------------------a~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 596 (713)
|++++++.|++.. ..+++|+..|+++++.+|++..+...+..+....
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999876532 3347899999999999999998887777665443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=6e-29 Score=275.35 Aligned_cols=351 Identities=13% Similarity=0.103 Sum_probs=292.7
Q ss_pred CCCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHH
Q 005125 202 CPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFE 276 (713)
Q Consensus 202 ~~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~ 276 (713)
...+.++|+.+|++++..+|.. .. ....+|.++...+ ++|...+++ .+|.++.+++.+|.++...|+++
T Consensus 37 ~~g~~~~A~~~~~~al~~~p~~--~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDPNE--PV----FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCTTC--HH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HhccHHHHHHHHHHHHhhCCCC--cH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHH
Confidence 3445889999999999999742 23 3445899998888 668888887 89999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHH-------------------------------------------------------------
Q 005125 277 DALALYDRAIAINSSKATY------------------------------------------------------------- 295 (713)
Q Consensus 277 ~A~~~~~~al~~~p~~~~~------------------------------------------------------------- 295 (713)
+|+..|+ ++..+|+....
T Consensus 111 ~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (537)
T 3fp2_A 111 DAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189 (537)
T ss_dssp HHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred HHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence 9999995 77776654322
Q ss_pred -------HHHHHH--------HHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 296 -------RSNKSA--------ALIGLGRQIEALVECKEAIRIDPCYHR-------AHHRLAMLYFRLGEAEKAVSHYKKS 353 (713)
Q Consensus 296 -------~~~la~--------~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~a 353 (713)
...++. .....|++++|+..|+++++.+|++.. ++..+|.++...|++++|+.+|+++
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 111111 222335899999999999999999854 5788889999999999999999999
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCC
Q 005125 354 SSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFC 433 (713)
Q Consensus 354 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 433 (713)
+. .+|. . ..+..++..+...|++++|+..+++++...|++. .++..+|.++...|++++|+..|++++...
T Consensus 270 ~~-~~~~-~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 270 IN-LHPT-P------NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP-PTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HH-HCCC-H------HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Hh-cCCC-c------hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99 9887 3 4567788889999999999999999999999885 889999999999999999999999999988
Q ss_pred hhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Q 005125 434 LEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEAC 513 (713)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 513 (713)
|+ ...++..+|.++...|++++|+.+|+++++.+|++..++. .+|.++...|++++|+
T Consensus 341 ~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 341 PE----------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPT------------FFAEILTDRGDFDTAI 398 (537)
T ss_dssp TT----------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH------------HHHHHHHHTTCHHHHH
T ss_pred CC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHhCCHHHHH
Confidence 85 4568899999999999999999999999999999998887 6899999999999999
Q ss_pred HHHHHHhccCCCCH------HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChHHHH------------
Q 005125 514 YAYSEGLEHEAYNS------VLLCNRAACRSKL----------GQYEKAVEDCTAALIVMPSYSKARL------------ 565 (713)
Q Consensus 514 ~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~------------ 565 (713)
..|+++++..|++. ..++.+|.++... |++++|+..|+++++.+|++..++.
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 99999999887553 3467778999999 9999999999999999999998876
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 566 EAAIQDYEMLIREIPGNEEVGRALF 590 (713)
Q Consensus 566 ~~A~~~~~~al~~~p~~~~~~~~l~ 590 (713)
++|+..|+++++++|++.+....+.
T Consensus 479 ~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 479 DEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 8999999999999999998766544
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=3.3e-29 Score=263.10 Aligned_cols=294 Identities=11% Similarity=0.033 Sum_probs=257.0
Q ss_pred HHHH-HHHhhhhcCCCccccccccccccchhhhhcCCCCchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005125 208 KTVD-YLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAI 286 (713)
Q Consensus 208 ~Ai~-~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 286 (713)
+|+. .|++++.+.|...... ...++.+|..++..|++++|+.+|++++
T Consensus 43 ~a~~~~~~~a~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~al 91 (368)
T 1fch_A 43 DLTSATYDKGYQFEEENPLRD-------------------------------HPQPFEEGLRRLQEGDLPNAVLLFEAAV 91 (368)
T ss_dssp ---CHHHHCCCCCCSSCTTTT-------------------------------CSSHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHhcCCCCcccc-------------------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7888 8888888876422111 2248899999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHH
Q 005125 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE 366 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~ 366 (713)
+.+|.++.++..+|.++...|++++|+.+|+++++++|++..++..+|.+|...|++++|+..|++++. ..|.+.....
T Consensus 92 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 170 (368)
T 1fch_A 92 QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR-YTPAYAHLVT 170 (368)
T ss_dssp HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TSTTTGGGCC
T ss_pred HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8887642211
Q ss_pred HH----------HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 367 AL----------HKHLTKCNEARELKRWNDLLKETQNVISFGADS-APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 367 ~~----------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
.. ......+..+ ..|++++|+..+++++...|.. .+.++..+|.+|...|++++|+.+|++++...|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 249 (368)
T 1fch_A 171 PAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249 (368)
T ss_dssp ---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 00 0011234444 8999999999999999999993 2588999999999999999999999999998875
Q ss_pred hHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Q 005125 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515 (713)
Q Consensus 436 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 515 (713)
.+.++..+|.++...|++++|+.+|+++++++|++..++. .+|.++...|++++|+..
T Consensus 250 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~ 307 (368)
T 1fch_A 250 ----------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY------------NLGISCINLGAHREAVEH 307 (368)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHCCCHHHHHHH
Confidence 4668999999999999999999999999999999998887 799999999999999999
Q ss_pred HHHHhccCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 516 YSEGLEHEAYN-----------SVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 516 ~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
|++++++.|++ ..+|..+|.++..+|++++|...++++++.
T Consensus 308 ~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 308 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 99999999988 899999999999999999999999877754
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.6e-29 Score=271.94 Aligned_cols=336 Identities=14% Similarity=0.090 Sum_probs=298.4
Q ss_pred chhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005125 235 VMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQ 309 (713)
Q Consensus 235 ~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 309 (713)
.+|.++...| ++|+..+++ ..| ++.++..+|.++...|++++|+.+|+++++.+|++..++..+|.++..+|++
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 3677777777 568888887 567 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC----------------------------------------------------------------
Q 005125 310 IEALVECKEAIRIDPC---------------------------------------------------------------- 325 (713)
Q Consensus 310 ~~A~~~~~~al~~~p~---------------------------------------------------------------- 325 (713)
++|+..|++++..+|.
T Consensus 90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 9999999999988763
Q ss_pred ---------------CHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhh----h--ccccHH-HHHHHHHHHHHHHHHHH
Q 005125 326 ---------------YHRAHHRLAMLYFR---LGEAEKAVSHYKKSSSL----A--NQKDIA-KAEALHKHLTKCNEARE 380 (713)
Q Consensus 326 ---------------~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~----~--~p~~~~-~~~~~~~~~~~~~~~~~ 380 (713)
+..++..+|.++.. .|++++|+..|++++.. + .|.+.. .......+..++..+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 26777888888886 89999999999999872 1 444422 23345678889999999
Q ss_pred hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc
Q 005125 381 LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA 460 (713)
Q Consensus 381 ~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 460 (713)
.|++++|+..+++++...|. ..++..+|.++...|++++|+.+|++++...|. ...++..+|.++...
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN----------NSSVYYHRGQMNFIL 317 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT----------CTHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC----------CHHHHHHHHHHHHHh
Confidence 99999999999999999999 689999999999999999999999999999885 455889999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005125 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL 540 (713)
Q Consensus 461 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 540 (713)
|++++|+.+|++++..+|.+..++. .+|.++...|++++|+..|+++++..|+++.++..+|.++...
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYI------------QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK 385 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHH------------HHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhChhhHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Confidence 9999999999999999999988887 6999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCChH------HH---------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 541 GQYEKAVEDCTAALIVMPSYSK------AR---------------LEAAIQDYEMLIREIPGNEEVGRALFEAQVQ 595 (713)
Q Consensus 541 g~~~~A~~~~~~al~~~p~~~~------a~---------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 595 (713)
|++++|+..|++++++.|++.. ++ +++|+..|++++..+|++..+...+..+...
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 461 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ 461 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 9999999999999999988743 22 2689999999999999999888777665544
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=1.2e-28 Score=258.87 Aligned_cols=275 Identities=14% Similarity=0.049 Sum_probs=241.8
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
++..++.+|..++..|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+|.+|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHH----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-hHHHHHHHHHH
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEA----LHKHLTKCNEARELKRWNDLLKETQNVISFGADS-APQVYALQAEA 412 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~la~~ 412 (713)
..+|++++|+.+|++++. +.|.+...... ......++..+...|++++|+..+++++...|.. .+.++..+|.+
T Consensus 144 ~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIK-QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHH-hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999999 88876532211 2233455788889999999999999999999982 25899999999
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 492 (713)
|...|++++|+.+|++++...|+ ++.++..+|.+|...|++++|+.+|+++++++|++..++.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------- 285 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPE----------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY------- 285 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH-------
Confidence 99999999999999999998885 4668999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAY------------NSVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
++|.++...|++++|+.+|++++++.|+ ...+|..++.++..+|+.+.|....++.+.
T Consensus 286 -----~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 286 -----NLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp -----HHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred -----HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 7999999999999999999999999887 367899999999999999999888776544
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.3e-27 Score=246.53 Aligned_cols=288 Identities=10% Similarity=0.027 Sum_probs=256.1
Q ss_pred hhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CH
Q 005125 236 MGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-RQ 309 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~ 309 (713)
++..+...+ ++|...++. .+|.++..+..++.+++..|++++|+.+++++++.+|.++.++..+|.++...| ++
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhH
Confidence 555555555 456666666 677888889999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 005125 310 IEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLK 389 (713)
Q Consensus 310 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 389 (713)
++|+.+|++++.++|.+..++..+|.++...|++++|+.+|++++. ..|.+. ..+..++..+...|++++|+.
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ-LMKGCH------LPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HTTTCS------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hccccH------HHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999 888864 456668999999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 390 ETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKT 469 (713)
Q Consensus 390 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 469 (713)
.+++++...|.+. .++..+|.++...|++++|+.+|++++...+...... .....+.++..+|.++...|++++|+.+
T Consensus 181 ~~~~al~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 181 FFSQALSIAPEDP-FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV-TVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHTTCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC-TTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCCCh-HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc-cccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999985 8899999999999999999999999988764322110 0123467899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHH-HHcCCHH
Q 005125 470 AQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACR-SKLGQYE 544 (713)
Q Consensus 470 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~ 544 (713)
|+++++++|++..++. .+|.++...|++++|+.+|+++++++|+++.++..++.++ ...|+.+
T Consensus 259 ~~~a~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLIPQNASTYS------------AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHSTTCSHHHH------------HHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhCccchHHHH------------HHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999998887 6999999999999999999999999999999999999998 5666654
No 17
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=2.6e-28 Score=254.63 Aligned_cols=251 Identities=13% Similarity=0.078 Sum_probs=227.2
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGR-QIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
++|.++++|..+|.++...|++++|+.+|+++++++|++..+|+++|.++..+|+ +++|+.+|++++.++|++..+|+.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4566677899999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA 412 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 412 (713)
+|.++..+|++++|+.+|++++. ++|++. .+|..+|.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~-ldP~~~-----------------------------------------~a~~~lg~~ 209 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILN-QDAKNY-----------------------------------------HAWQHRQWV 209 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH-hCccCH-----------------------------------------HHHHHHHHH
Confidence 99999999999999999999999 999884 788889999
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA-AGRFEDA-----VKTAQDAAQIDPNNKEVIKG 486 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~ 486 (713)
+..+|++++|+.+|++++.++|+ +..+|+++|.++.. .|.+++| +.+|++++.++|++..+|.
T Consensus 210 ~~~~g~~~eAl~~~~~al~l~P~----------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~- 278 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKEDVR----------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN- 278 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH-
T ss_pred HHHcCChHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHH-
Confidence 99999999999999999999885 56688999999999 5554777 5999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-H
Q 005125 487 VKMAKAMASARLRGNLLFKAS--KYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLG--------Q-YEKAVEDCTAA-L 554 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l 554 (713)
++|.++...| ++++|++.+.++ +.+|+++.++..+|.+|.++| + +++|+.+|+++ +
T Consensus 279 -----------~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~ 346 (382)
T 2h6f_A 279 -----------YLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK 346 (382)
T ss_dssp -----------HHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 6899998888 799999999998 999999999999999999985 2 58888888888 8
Q ss_pred HhCCCChHHHHHHHH
Q 005125 555 IVMPSYSKARLEAAI 569 (713)
Q Consensus 555 ~~~p~~~~a~~~~A~ 569 (713)
+++|.....|...+.
T Consensus 347 ~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 347 EKDTIRKEYWRYIGR 361 (382)
T ss_dssp TTCGGGHHHHHHHHH
T ss_pred HhCchhHHHHHHHHH
Confidence 888887777764443
No 18
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=5.6e-27 Score=255.18 Aligned_cols=341 Identities=14% Similarity=0.090 Sum_probs=280.0
Q ss_pred cccchhhhhcCCC--CchhhhHhh------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------
Q 005125 232 RNGVMGNIVKQPS--GEFPQCISS------------LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAIN-------- 289 (713)
Q Consensus 232 ~~~~lg~~~~~~~--~~a~~~~~~------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------- 289 (713)
....+|.++..+| ++|+..+++ .+|....+|.++|.+|+.+|++++|+.+|++++++.
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3456899999999 567777765 267778899999999999999999999999999873
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHhhhhccccHHH
Q 005125 290 SSKATYRSNKSAALIGL--GRQIEALVECKEAIRIDPCYHRAHHRLAMLYF---RLGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 290 p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
+..+.++..+|.++... +++++|+.+|+++++++|+++.++..+|.++. ..+++++|++.|+++++ ++|.+...
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~-l~p~~~~~ 211 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR-LNPDNQYL 211 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-HCSSCHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-cCCcchHH
Confidence 35678888898887765 47999999999999999999999999998865 45788899999999999 99998632
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
...+ ....+......+++++|+..+++++..+|... .++..+|.+|...|++++|+..|+++++..|+
T Consensus 212 ~~~l--~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------- 279 (472)
T 4g1t_A 212 KVLL--ALKLHKMREEGEEEGEGEKLVEEALEKAPGVT-DVLRSAAKFYRRKDEPDKAIELLKKALEYIPN--------- 279 (472)
T ss_dssp HHHH--HHHHHHCC------CHHHHHHHHHHHHCSSCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------
T ss_pred HHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH-HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---------
Confidence 2111 11222334456788999999999999999986 88999999999999999999999999999985
Q ss_pred CcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 445 GGAYLLIVRAQVYIAA-------------------GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
.+.++..+|.+|... +.+++|+..|++++.++|.+..++. .+|.++..
T Consensus 280 -~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------~lg~~~~~ 346 (472)
T 4g1t_A 280 -NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS------------ILASLHAL 346 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH------------HHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh------------hHHHHHHH
Confidence 456788888887543 3468899999999999999988887 69999999
Q ss_pred cccHHHHHHHHHHHhccCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHH--HHHHHHHHHHHHhC
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSV---LLCNRAAC-RSKLGQYEKAVEDCTAALIVMPSYSKARL--EAAIQDYEMLIREI 579 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~--~~A~~~~~~al~~~ 579 (713)
.|++++|+.+|+++++++|.+.. ++..+|.+ +..+|++++|+.+|+++++++|++..... ..+...+++++..+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN 426 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999887643 46677754 45789999999999999999999876554 67778889999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 005125 580 PGNEEVGRALFEAQVQLKK 598 (713)
Q Consensus 580 p~~~~~~~~l~~~~~~l~~ 598 (713)
|++..+...|..+.....+
T Consensus 427 p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEK 445 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 9999999888877766554
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=9.1e-27 Score=253.50 Aligned_cols=318 Identities=12% Similarity=0.013 Sum_probs=257.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAI---------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI------ 322 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 322 (713)
.+..+..+|.++..+|++++|+++|++|+++ +|....+|.++|.+|..+|++++|+.+|++++++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3557889999999999999999999999986 6777889999999999999999999999999987
Q ss_pred --CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH---HHHhhcHHHHHHHHHHHH
Q 005125 323 --DPCYHRAHHRLAMLYFRL--GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE---ARELKRWNDLLKETQNVI 395 (713)
Q Consensus 323 --~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~al 395 (713)
.+..+.++..+|.++... +++++|+.+|++++. ++|++.. .+...+.. +...++.++|+..+++++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~-~~p~~~~------~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE-KKPKNPE------FTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH-HSTTCHH------HHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH-hCCCCHH------HHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 345678899999887765 479999999999999 9999863 33334443 344567789999999999
Q ss_pred HcCCCChHHHHHHHHHHHHH----ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 396 SFGADSAPQVYALQAEALLR----LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQ 471 (713)
Q Consensus 396 ~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 471 (713)
+++|++. .++..+|..+.. .+++++|+.+|++++...|+ .+.++..+|.+|...|++++|+..|+
T Consensus 203 ~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~----------~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 203 RLNPDNQ-YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG----------VTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp HHCSSCH-HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS----------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCcch-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc----------HHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 9999986 677777776654 46789999999999998884 56688999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005125 472 DAAQIDPNNKEVIKGVKMAKAMAS-------ARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYE 544 (713)
Q Consensus 472 ~al~~~p~~~~~~~~~~~~~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 544 (713)
++++.+|++..++..++.+..... ....+......+.+++|+..|+++++++|.+..++..+|.+|..+|+++
T Consensus 272 ~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 999999999998874322111000 0111122223456889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHH---H-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 545 KAVEDCTAALIVMPSYSKAR---L-------------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 545 ~A~~~~~~al~~~p~~~~a~---~-------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
+|+.+|+++++++|++.... + ++|+..|+++++++|++......+..+.
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~ 416 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 99999999999998865431 1 7899999999999999988666554443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=6.3e-28 Score=253.31 Aligned_cols=265 Identities=14% Similarity=0.098 Sum_probs=232.8
Q ss_pred HHHHhcCHHHHHH-HHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005125 268 EAYNKARFEDALA-LYDRAIAINSSK----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE 342 (713)
Q Consensus 268 ~~~~~g~~~~A~~-~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 342 (713)
++...|+|++|+. .|++++...|.+ ...++.+|.++...|++++|+.+|+++++.+|++..++..+|.+|...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5666799999999 999999998876 45789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH---------------
Q 005125 343 AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA--------------- 407 (713)
Q Consensus 343 ~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------------- 407 (713)
+++|+.+|++++. ++|.+. ..+..++..+...|++++|+..+++++...|........
T Consensus 114 ~~~A~~~~~~al~-~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 114 ELLAISALRRCLE-LKPDNQ------TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHHHHHHHHHHHH-HCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred HHHHHHHHHHHHh-cCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 9999999999999 999874 577888999999999999999999999999987532221
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGV 487 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 487 (713)
.++.++ ..|++++|+.+|++++...|+. ..+.++..+|.+|...|++++|+.+|++++.++|++..++.
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 255 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVRLDPTS--------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN-- 255 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHSTTS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--
T ss_pred HHHHHh-hcccHHHHHHHHHHHHHhCcCc--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH--
Confidence 356666 9999999999999999988852 14668999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 488 KMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 488 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
.+|.++...|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..|++++++.|++
T Consensus 256 ----------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 256 ----------KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp ----------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred ----------HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999999999999999999999999999999999999999999999987
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=1.1e-27 Score=246.81 Aligned_cols=276 Identities=10% Similarity=0.006 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
..++.+|..++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++++|++..++..+|.+|..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHH-------HHHHH-HH-HHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALH-------KHLTK-CN-EARELKRWNDLLKETQNVISFGADSAPQVYALQA 410 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~-------~~~~~-~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la 410 (713)
.|++++|+..|++++. ..|.+........ ..... +. .+...|++++|+..+++++...|.+. .++..+|
T Consensus 102 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLL-SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA-QLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHH-TSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHH-hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH-HHHHHHH
Confidence 9999999999999999 8888643221110 00011 22 46778999999999999999999975 8899999
Q ss_pred HHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 411 EALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
.++...|++++|+.++++++...|+ .+.++..+|.++...|++++|+.+|+++++.+|++..++.
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----- 244 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPD----------DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY----- 244 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-----
Confidence 9999999999999999999998874 4668999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY------------NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 558 (713)
.+|.++...|++++|+..|++++...|+ +..++..+|.++..+|++++|...++++++..|
T Consensus 245 -------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 245 -------NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp -------HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred -------HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999999 799999999999999999999999998887654
Q ss_pred C
Q 005125 559 S 559 (713)
Q Consensus 559 ~ 559 (713)
+
T Consensus 318 ~ 318 (327)
T 3cv0_A 318 K 318 (327)
T ss_dssp H
T ss_pred h
Confidence 3
No 22
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=3.7e-26 Score=228.95 Aligned_cols=243 Identities=11% Similarity=0.031 Sum_probs=216.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY----HRAHHRL 333 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 333 (713)
+++.++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++++. .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999 4433 5569999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
|.+|...|++++|+.+|++++. .+|.+. .++..+|.+|
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~-~~~~~~-----------------------------------------~~~~~l~~~~ 118 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVD-RDTTRL-----------------------------------------DMYGQIGSYF 118 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HSTTCT-----------------------------------------HHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHh-cCcccH-----------------------------------------HHHHHHHHHH
Confidence 9999999999999999999999 888763 7888999999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
...|++++|+.+|++++...|. .+.+++.+|...+..+++++|+.+|+++++++|++..++.
T Consensus 119 ~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~-------- 180 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRPTTT----------DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL-------- 180 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCSSCC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH--------
T ss_pred HHccCHHHHHHHHHHHhhcCCC----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHH--------
Confidence 9999999999999999999874 5668999995555567999999999999999999988877
Q ss_pred HHHHHHHHHHHHccc---HHHHHHHHHHHhccC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 494 ASARLRGNLLFKASK---YKEACYAYSEGLEHE---AY-----NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
.+|.++...|+ +++|+..|+++++.. |+ ...++..+|.+|...|++++|+.+|+++++++|+++.
T Consensus 181 ----~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 181 ----WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp ----HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ----HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHH
Confidence 68999999999 999999999999886 44 2368999999999999999999999999999998876
Q ss_pred HHH
Q 005125 563 ARL 565 (713)
Q Consensus 563 a~~ 565 (713)
++-
T Consensus 257 a~~ 259 (272)
T 3u4t_A 257 AID 259 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-25 Score=222.24 Aligned_cols=227 Identities=20% Similarity=0.284 Sum_probs=201.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-------HRAH 330 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 330 (713)
.++.++.+|..++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+.+++++++++|++ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 889999999999999999999999999999998876 7899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQA 410 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la 410 (713)
..+|.+|...|++++|+.+|++++. +.|. +
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-------------------------------------------------~ 112 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT-EHRT-------------------------------------------------A 112 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HCCC-------------------------------------------------H
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh-cCch-------------------------------------------------h
Confidence 9999999999999999999999998 7665 2
Q ss_pred HHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 411 EALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
.++...|++++|+..+++++...|. .+.++..+|.++...|++++|+.+|++++..+|.+..++.
T Consensus 113 ~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----- 177 (258)
T 3uq3_A 113 DILTKLRNAEKELKKAEAEAYVNPE----------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS----- 177 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCcc----------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHH-----
Confidence 3455667778888888888877775 3457888899999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++
T Consensus 178 -------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 178 -------NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp -------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999999999999887
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=2.3e-26 Score=241.29 Aligned_cols=256 Identities=13% Similarity=0.100 Sum_probs=219.1
Q ss_pred HHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005125 279 LALYDRAIAINSSK----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSS 354 (713)
Q Consensus 279 ~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 354 (713)
+..+.+++...+.+ ...++.+|.++...|++++|+.+|++++..+|++..++..+|.+|...|++++|+.+|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555554444 45599999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChH---------HHHHHHHHHHHHccCHHHHHHH
Q 005125 355 SLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP---------QVYALQAEALLRLQRHQEAHDS 425 (713)
Q Consensus 355 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~~la~~~~~~g~~~~A~~~ 425 (713)
. ++|.+. ..+..++..+...|++++|+..+++++...|+... .++..+|.++...|++++|+.+
T Consensus 127 ~-~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 127 E-LQPNNL------KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp H-HCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHH
T ss_pred h-cCCCCH------HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHH
Confidence 9 999884 66888899999999999999999999999886531 2334459999999999999999
Q ss_pred hhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 426 YNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 426 ~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
|++++...|+. .++.+++.+|.+|...|++++|+.+|+++++++|++..++. .+|.++..
T Consensus 200 ~~~al~~~p~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~ 259 (365)
T 4eqf_A 200 YLEAAHQNGDM--------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWN------------RLGATLAN 259 (365)
T ss_dssp HHHHHHHSCSS--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHH
T ss_pred HHHHHHhCcCc--------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHH
Confidence 99999988752 15668999999999999999999999999999999998887 79999999
Q ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
.|++++|+..|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|+..
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 99999999999999999999999999999999999999999999999999998853
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=2.8e-26 Score=239.29 Aligned_cols=244 Identities=13% Similarity=0.009 Sum_probs=223.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhhccccHH
Q 005125 285 AIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE-AEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 285 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~p~~~~ 363 (713)
++.++|++..++..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+.+|++++. ++|++.
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~-l~P~~~- 166 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-EQPKNY- 166 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HCTTCH-
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HCCCCH-
Confidence 5678899999999999999999999999999999999999999999999999999997 9999999999999 999873
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcc
Q 005125 364 KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL 443 (713)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 443 (713)
.+|+.+|.++..+|++++|+.+|++++.++|+
T Consensus 167 ----------------------------------------~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-------- 198 (382)
T 2h6f_A 167 ----------------------------------------QVWHHRRVLVEWLRDPSQELEFIADILNQDAK-------- 198 (382)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--------
T ss_pred ----------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--------
Confidence 88999999999999999999999999999995
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHH-----HHHHH
Q 005125 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK-ASKYKEA-----CYAYS 517 (713)
Q Consensus 444 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~ 517 (713)
+..+|+++|.++..+|++++|+.+|+++++++|++..+|. ++|.++.. .|.+++| +.+|+
T Consensus 199 --~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~------------~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 199 --NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN------------QRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp --CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 5668999999999999999999999999999999999998 79999999 5555888 59999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHH---------------------HHHHHHHHH
Q 005125 518 EGLEHEAYNSVLLCNRAACRSKLG--QYEKAVEDCTAALIVMPSYSKARL---------------------EAAIQDYEM 574 (713)
Q Consensus 518 ~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~---------------------~~A~~~~~~ 574 (713)
++++++|++..+|+++|.++...| ++++|++.++++ +.+|++..++. ++|+..|++
T Consensus 265 ~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 265 EMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 999999999999999999999998 699999999998 89999875533 468889999
Q ss_pred H-HHhCCCCHHHHHHHHHHH
Q 005125 575 L-IREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 575 a-l~~~p~~~~~~~~l~~~~ 593 (713)
+ ++++|.....+..+....
T Consensus 344 l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 344 LAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHH
Confidence 9 999999998887766544
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=8.7e-26 Score=217.88 Aligned_cols=201 Identities=20% Similarity=0.230 Sum_probs=167.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
|.++++++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHH
Q 005125 336 LYFRL-----------GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQ 404 (713)
Q Consensus 336 ~~~~~-----------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 404 (713)
++..+ |++++|+..|+++++ ++|++ +.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~P~~-----------------------------------------~~ 119 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAER-VNPRY-----------------------------------------AP 119 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH-HCTTC-----------------------------------------HH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHH-hCccc-----------------------------------------HH
Confidence 99988 666666666666666 55554 37
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 484 (713)
++..+|.+|...|++++|+..|++++++. + ++.+++.+|.+|...|++++|+..|+++++++|+++.++
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 188 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE-D----------TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc-c----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 88899999999999999999999999877 4 455889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
. ++|.++...|++++|+..|+++-.
T Consensus 189 ~------------~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 189 V------------RYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp H------------HHHHHHTC----------------
T ss_pred H------------HHHHHHHHccCHHHHHHHHHHHhh
Confidence 7 699999999999999999987643
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=1.3e-25 Score=216.68 Aligned_cols=200 Identities=20% Similarity=0.199 Sum_probs=174.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHH
Q 005125 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH 369 (713)
Q Consensus 290 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~ 369 (713)
|.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++ ++|++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~------- 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA-RTPRYL------- 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH-------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcH-------
Confidence 778899999999999999999999999999999999999999999999999999999999999999 888873
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc-----------cCHHHHHHHhhccccCChhhHH
Q 005125 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL-----------QRHQEAHDSYNKSPKFCLEYYT 438 (713)
Q Consensus 370 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~ 438 (713)
.++..+|.++... |++++|+..|++++++.|+
T Consensus 74 ----------------------------------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--- 116 (217)
T 2pl2_A 74 ----------------------------------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--- 116 (217)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred ----------------------------------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc---
Confidence 6778888888888 9999999999999999995
Q ss_pred hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 439 KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 439 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
.+.+++.+|.+|...|++++|+..|+++++++ +++.++. ++|.++...|++++|+..|++
T Consensus 117 -------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~------------~la~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 117 -------YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS------------ALAELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH------------HHHHHHHHHTCHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH------------HHHHHHHHcCCHHHHHHHHHH
Confidence 56689999999999999999999999999999 8888887 799999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 519 GLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 519 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 554 (713)
+++++|+++.++.++|.++..+|++++|+..|+++.
T Consensus 177 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 177 ALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999998865
No 28
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=6.4e-25 Score=233.42 Aligned_cols=292 Identities=13% Similarity=0.080 Sum_probs=247.7
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK----ATYRSNKSAALIGLGRQIEALVECKEAIRI------DPCY 326 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 326 (713)
.....++.+|..++..|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+.+|++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 456678999999999999999999999999999988 468999999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc--------------------HHH
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR--------------------WND 386 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 386 (713)
..++..+|.+|...|++++|+.+|++++. +.+...........+..++..+...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 78999999999999999999999999999 776654445556788899999999999 999
Q ss_pred HHHHHHHHHHcCC-----CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcC
Q 005125 387 LLKETQNVISFGA-----DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG 461 (713)
Q Consensus 387 A~~~~~~al~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 461 (713)
|+..+++++.+.. .....++..+|.+|...|++++|+.+|++++.+.+...... ..+.++..+|.+|...|
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA----AERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHcC
Confidence 9999999987621 22236888999999999999999999999998876542211 23568999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC------HHHHHHHHH
Q 005125 462 RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN------SVLLCNRAA 535 (713)
Q Consensus 462 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~ 535 (713)
++++|+.+|++++.+.+....... ....+..+|.++...|++++|+.+|++++++.+.. ..++..+|.
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCcCchH------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999999999999988665422111 12334579999999999999999999999885543 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 536 CRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 536 ~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+|..+|++++|+.+|++++++.+.
T Consensus 316 ~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987543
No 29
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.93 E-value=3.6e-25 Score=236.19 Aligned_cols=292 Identities=13% Similarity=0.068 Sum_probs=247.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA----TYRSNKSAALIGLGRQIEALVECKEAIRI------DPCYH 327 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 327 (713)
....++.+|..++..|++++|+.+|+++++.+|++. .++..+|.+|...|++++|+.+|++++.+ .|...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345688999999999999999999999999999986 58999999999999999999999999998 56678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc-----------------HHHHHHH
Q 005125 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR-----------------WNDLLKE 390 (713)
Q Consensus 328 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~ 390 (713)
.++..+|.+|...|++++|+.+|++++. +.+...........+..++..+...|+ +++|+..
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLT-LARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 8999999999999999999999999999 644332233446778889999999999 9999999
Q ss_pred HHHHHHcCC-----CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHH
Q 005125 391 TQNVISFGA-----DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFED 465 (713)
Q Consensus 391 ~~~al~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 465 (713)
+++++.+.+ .....++..+|.+|...|++++|+.+|++++.+.+...... ....++..+|.+|...|++++
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA----AERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHCcCHHH
Confidence 999987632 22346888999999999999999999999998877643211 235588999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHH
Q 005125 466 AVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY------NSVLLCNRAACRSK 539 (713)
Q Consensus 466 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~ 539 (713)
|+.+|++++.+.+....... ....+..+|.++...|++++|+.+|++++++.+. ...++..+|.+|..
T Consensus 282 A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREV------EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 99999999998765422111 1233457999999999999999999999988543 25689999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 005125 540 LGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 540 ~g~~~~A~~~~~~al~~~p~~ 560 (713)
+|++++|+.+|++++++.+..
T Consensus 356 ~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 356 IGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCHH
T ss_pred hccHHHHHHHHHHHHHHHhhc
Confidence 999999999999999987653
No 30
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=1.3e-24 Score=224.28 Aligned_cols=291 Identities=13% Similarity=0.084 Sum_probs=243.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK----ATYRSNKSAALIGLGRQIEALVECKEAIRI------DPCYHR 328 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 328 (713)
...++..|..++..|++++|+.+|+++++.+|.+ ..++..+|.++...|++++|+.++++++.+ .+....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3468899999999999999999999999999998 468889999999999999999999999987 445578
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc--------------------HHHHH
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR--------------------WNDLL 388 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~ 388 (713)
++..+|.+|...|++++|+.+|++++. +.+...........+..++..+...|+ +++|+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999 766544444456678889999999999 99999
Q ss_pred HHHHHHHHcC-----CCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCH
Q 005125 389 KETQNVISFG-----ADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRF 463 (713)
Q Consensus 389 ~~~~~al~~~-----p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 463 (713)
..+++++... +.....++..+|.++...|++++|+.++++++.+.+..... ...+.++..+|.++...|++
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK----AAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHHHHcCCH
Confidence 9999988762 22223678899999999999999999999999876653221 12356899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC------HHHHHHHHHHH
Q 005125 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN------SVLLCNRAACR 537 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 537 (713)
++|+.+|++++.+.+....... ....+..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhH------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 9999999999987665422111 12334479999999999999999999999875532 56899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 005125 538 SKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 538 ~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
..+|++++|+.++++++++.+..
T Consensus 314 ~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC----
T ss_pred HHcCChHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987653
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=7.3e-25 Score=225.58 Aligned_cols=237 Identities=15% Similarity=0.159 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Q 005125 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372 (713)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 372 (713)
...++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|++++. .+|.+. ..+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------~~~~ 93 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM-LDPKDI------AVHA 93 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH------HHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCcCCH------HHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999 999874 5677
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH--------------HH-HHHHccCHHHHHHHhhccccCChhhH
Q 005125 373 TKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQ--------------AE-ALLRLQRHQEAHDSYNKSPKFCLEYY 437 (713)
Q Consensus 373 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~~~~~ 437 (713)
.++..+...|++++|+..+++++...|... ..+..+ +. ++...|++++|+.++++++...|+
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-- 170 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQYE-QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-- 170 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTT-TC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccH-HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC--
Confidence 889999999999999999999999999875 444444 55 688999999999999999988874
Q ss_pred HhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005125 438 TKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYS 517 (713)
Q Consensus 438 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 517 (713)
.+.++..+|.++...|++++|+.+|++++..+|++..++. .+|.++...|++++|+..|+
T Consensus 171 --------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 171 --------DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN------------KLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHcCCHHHHHHHHH
Confidence 5668999999999999999999999999999999998887 69999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 518 EGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 518 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
++++..|+++.++..+|.++..+|++++|+..|++++++.|+
T Consensus 231 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 231 RALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=3.8e-24 Score=215.94 Aligned_cols=272 Identities=14% Similarity=0.079 Sum_probs=214.3
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005125 267 NEAYNKARFEDALALYDRAIAINSSK-ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEK 345 (713)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 345 (713)
...+..|+|.+|+..+++....+|++ .+....++.+|..+|++++|+..++. .+|....++..++..+...+++++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 45677899999999988877777776 35777888999999999999987765 256567788888888888899999
Q ss_pred HHHHHHHHhhhh--ccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHH
Q 005125 346 AVSHYKKSSSLA--NQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAH 423 (713)
Q Consensus 346 A~~~~~~al~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 423 (713)
|++.+++++. . +|++. ..++.++..+...|++++|+..+++ |.+ +.++..+|.+|..+|++++|+
T Consensus 84 A~~~l~~ll~-~~~~P~~~------~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 84 IVAELDREMS-RSVDVTNT------TFLLMAASIYFYDQNPDAALRTLHQ-----GDS-LECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHHHHHH-SCCCCSCH------HHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHh-cccCCCCH------HHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 9999998876 4 57774 4567777888888888888888877 544 478888899999999999999
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRA--QVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGN 501 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~ 501 (713)
..|++++...|+... .....+ .++...|++++|+.+|+++++.+|+++.++. ++|.
T Consensus 151 ~~l~~~~~~~p~~~~----------~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~------------~la~ 208 (291)
T 3mkr_A 151 KELKKMQDQDEDATL----------TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN------------GQAA 208 (291)
T ss_dssp HHHHHHHHHCTTCHH----------HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH------------HHHH
T ss_pred HHHHHHHhhCcCcHH----------HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH------------HHHH
Confidence 999998888775321 111112 2233458899999999999999998888877 6899
Q ss_pred HHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCChHHHH-HHHHHHHHHHH
Q 005125 502 LLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEK-AVEDCTAALIVMPSYSKARL-EAAIQDYEMLI 576 (713)
Q Consensus 502 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~a~~-~~A~~~~~~al 576 (713)
++..+|++++|+..|+++++.+|+++.++.++|.++..+|++++ +..+++++++++|+++.+.- .+....|+++.
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLV 285 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876 56788899999998887665 44555555544
No 33
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=1.2e-22 Score=222.04 Aligned_cols=333 Identities=12% Similarity=0.032 Sum_probs=281.3
Q ss_pred CCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcC----CC--CchhhhHhh-cCCCCHHHHHHHHHHHHH----
Q 005125 203 PNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQ----PS--GEFPQCISS-LNKLDPEELKFMGNEAYN---- 271 (713)
Q Consensus 203 ~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~----~~--~~a~~~~~~-~~~~~~~~~~~lg~~~~~---- 271 (713)
..+.++|+.+|+++++... .. ....+|.+|.. .+ +.|..++++ ....++.+++.+|..|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~~----~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGY----TP----AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHHCCC----HH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 4455699999999998752 22 33458888876 44 558888888 777899999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 005125 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIG----LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR----LGEA 343 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~ 343 (713)
.+++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++
T Consensus 128 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCH
Confidence 89999999999999876 578999999999998 89999999999999986 579999999999998 8999
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH----
Q 005125 344 EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARE----LKRWNDLLKETQNVISFGADSAPQVYALQAEALLR---- 415 (713)
Q Consensus 344 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~---- 415 (713)
++|+.+|+++++ .... .....++..+.. .+++++|+..|++++...+ +.+++.+|.+|..
T Consensus 204 ~~A~~~~~~a~~-~~~~--------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 204 AISAQWYRKSAT-SGDE--------LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SIAQFRLGYILEQGLAG 271 (490)
T ss_dssp HHHHHHHHHHHH-TTCH--------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHH-CCCH--------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHCCCCC
Confidence 999999999988 5432 456777777776 7899999999999998743 4788999999999
Q ss_pred ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA-----GRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 416 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
.+++++|+.+|+++++.. ++.+++.+|.+|... +++++|+.+|+++++.. ++.++.
T Consensus 272 ~~d~~~A~~~~~~a~~~~------------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~----- 332 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG------------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQA----- 332 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT------------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHHH-----
Confidence 899999999999998642 355888999999998 99999999999999864 556665
Q ss_pred HHHHHHHHHHHHHHHcc---cHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHH
Q 005125 491 KAMASARLRGNLLFKAS---KYKEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
++|.++...| ++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.. ++.+
T Consensus 333 -------~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 333 -------NLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp -------HHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred -------HHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 6899998866 899999999999987 579999999999999 899999999999999875 4545
Q ss_pred HH----------------HHHHHHHHHHHHhCCC---CHHHHHHH
Q 005125 564 RL----------------EAAIQDYEMLIREIPG---NEEVGRAL 589 (713)
Q Consensus 564 ~~----------------~~A~~~~~~al~~~p~---~~~~~~~l 589 (713)
++ ++|+.+|+++++..|+ ++.+...+
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l 446 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITE 446 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHH
Confidence 44 8899999999999855 55554443
No 34
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=2.2e-22 Score=219.86 Aligned_cols=311 Identities=13% Similarity=0.032 Sum_probs=267.6
Q ss_pred CCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcC----CC--CchhhhHhh-cCCCCHHHHHHHHHHHHH----
Q 005125 203 PNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQ----PS--GEFPQCISS-LNKLDPEELKFMGNEAYN---- 271 (713)
Q Consensus 203 ~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~----~~--~~a~~~~~~-~~~~~~~~~~~lg~~~~~---- 271 (713)
+.+.++|+.+|+++++... .. ....+|.++.. .+ ++|...+++ ....++.+++.+|.+|..
T Consensus 92 ~~~~~~A~~~~~~a~~~~~----~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~ 163 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGL----PQ----AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGV 163 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred CCCHHHHHHHHHHHHHCCC----HH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 4456799999999998652 22 33347888876 33 568888888 777899999999999998
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 005125 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIG----LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR----LGEA 343 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~ 343 (713)
.+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++
T Consensus 164 ~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 89999999999999986 579999999999999 89999999999999876 468999999999997 8999
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc---
Q 005125 344 EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARE----LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL--- 416 (713)
Q Consensus 344 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~--- 416 (713)
++|+.+|+++++ .... ...+.++..+.. .+++++|+..|+++++.+ + +.+++.+|.+|...
T Consensus 240 ~~A~~~~~~a~~-~~~~--------~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~-~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 240 TQSRVLFSQSAE-QGNS--------IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--N-SDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HHHHHHHHHHHT-TTCH--------HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--C-HHHHHHHHHHHHHCBTT
T ss_pred HHHHHHHHHHHH-CCCH--------HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--C-HHHHHHHHHHHHcCCCC
Confidence 999999999988 5332 456677778877 899999999999998764 2 47889999999998
Q ss_pred --cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 417 --QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG---RFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491 (713)
Q Consensus 417 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 491 (713)
+++++|+.+|+++++.. .+.+++.+|.+|...| ++++|+.+|+++++. .++.++.
T Consensus 308 ~~~~~~~A~~~~~~a~~~~------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~------ 367 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF------ 367 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHH------
T ss_pred CcCCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHH------
Confidence 99999999999998753 3558899999999877 899999999999987 5677776
Q ss_pred HHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---C
Q 005125 492 AMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMPS---Y 560 (713)
Q Consensus 492 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~ 560 (713)
++|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.+|+ +
T Consensus 368 ------~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 439 (490)
T 2xm6_A 368 ------NLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT 439 (490)
T ss_dssp ------HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred ------HHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence 79999999 89999999999999986 469999999999999 99999999999999999954 6
Q ss_pred hHHHH
Q 005125 561 SKARL 565 (713)
Q Consensus 561 ~~a~~ 565 (713)
+.+..
T Consensus 440 ~~a~~ 444 (490)
T 2xm6_A 440 ENRNI 444 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65555
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-23 Score=207.85 Aligned_cols=235 Identities=20% Similarity=0.259 Sum_probs=212.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 371 (713)
.+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.+|...|++++|+.+|++++. +.|.+..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~-------- 73 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVE-QGREMRA-------- 73 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTC--------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hCccccc--------
Confidence 46789999999999999999999999999999 8899999999999999999999999999999 7775410
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 451 (713)
++. ..+.++..+|.++...|++++|+.+|++++.+.|.
T Consensus 74 -----------~~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------- 111 (258)
T 3uq3_A 74 -----------DYK---------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------------- 111 (258)
T ss_dssp -----------CHH---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------
T ss_pred -----------chH---------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----------------
Confidence 000 00378888999999999999999999999987764
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHH
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLC 531 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 531 (713)
+.++...|++++|+..+++++..+|.+..++. .+|.++...|++++|+..|+++++.+|.++.++.
T Consensus 112 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 177 (258)
T 3uq3_A 112 --ADILTKLRNAEKELKKAEAEAYVNPEKAEEAR------------LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS 177 (258)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHH------------HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHH
Confidence 56788889999999999999999998888777 6999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 005125 532 NRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREI------PGNEEVGRALFEA 592 (713)
Q Consensus 532 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~------p~~~~~~~~l~~~ 592 (713)
.+|.++..+|++++|+..|+++++++|++..++. ++|+..|+++++++ |++.++...+.++
T Consensus 178 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 178 NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999999999999998877 89999999999999 9988887776543
No 36
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=1.4e-22 Score=203.08 Aligned_cols=234 Identities=18% Similarity=0.181 Sum_probs=206.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIG----LGRQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
+|.++.+++.+|..+...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 477899999999999999999999999999998 7888999999999999 999999999999999885 78999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 005125 331 HRLAMLYFR----LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY 406 (713)
Q Consensus 331 ~~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 406 (713)
+.+|.+|.. .+++++|+.+|++++. .+ + +.++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~--~-----------------------------------------~~a~ 113 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACD-LK--Y-----------------------------------------AEGC 113 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT--C-----------------------------------------HHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHH-cC--C-----------------------------------------ccHH
Confidence 999999999 9999999999999988 42 2 3678
Q ss_pred HHHHHHHHH----ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 005125 407 ALQAEALLR----LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA----AGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 407 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p 478 (713)
..+|.+|.. .+++++|+.+|+++++.. .+.+++.+|.+|.. .+++++|+.+|+++++..
T Consensus 114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 180 (273)
T 1ouv_A 114 ASLGGIYHDGKVVTRDFKKAVEYFTKACDLN------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK- 180 (273)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 888999999 999999999999998754 34578889999999 999999999999999874
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 005125 479 NNKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDC 550 (713)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~ 550 (713)
++.++. .+|.++.. .+++++|+.+|+++++..| +.+++++|.+|.. .+++++|+.+|
T Consensus 181 -~~~a~~------------~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 181 -DSPGCF------------NAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENF 245 (273)
T ss_dssp -CHHHHH------------HHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred -CHHHHH------------HHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 455555 69999999 9999999999999999866 8899999999999 99999999999
Q ss_pred HHHHHhCCCChHHH
Q 005125 551 TAALIVMPSYSKAR 564 (713)
Q Consensus 551 ~~al~~~p~~~~a~ 564 (713)
++++++.|++...+
T Consensus 246 ~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 246 KKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHHHTCHHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 99999998764433
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=1.6e-23 Score=209.57 Aligned_cols=241 Identities=12% Similarity=0.044 Sum_probs=210.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 371 (713)
+++.++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|++++. ..++
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~----------- 69 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNA----------- 69 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT-----------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc-----------
Confidence 3467889999999999999999999999999999999999999999999999999999999988 4422
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 451 (713)
+.....++..+|.++...|++++|+.+|++++...|+ .+.++.
T Consensus 70 ---------------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~ 112 (272)
T 3u4t_A 70 ---------------------------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT----------RLDMYG 112 (272)
T ss_dssp ---------------------------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CTHHHH
T ss_pred ---------------------------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc----------cHHHHH
Confidence 1222467889999999999999999999999998885 456899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHH
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLC 531 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 531 (713)
.+|.+|...|++++|+.+|+++++.+|.+..++. .+|...+..+++++|+..|+++++.+|++..++.
T Consensus 113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 180 (272)
T 3u4t_A 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFY------------ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 9999999999999999999999999999999887 6895555566999999999999999999999999
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhC---CCCh-----HHHH------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 532 NRAACRSKLGQ---YEKAVEDCTAALIVM---PSYS-----KARL------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 532 ~la~~~~~~g~---~~~A~~~~~~al~~~---p~~~-----~a~~------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
.+|.++..+|+ +++|+..|++++++. |+.. .++. ++|+..|+++++++|+++.+...
T Consensus 181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 99999999999 999999999999986 4421 2222 99999999999999999999888
Q ss_pred HHHHH
Q 005125 589 LFEAQ 593 (713)
Q Consensus 589 l~~~~ 593 (713)
+....
T Consensus 261 l~~~~ 265 (272)
T 3u4t_A 261 LKMKL 265 (272)
T ss_dssp HC---
T ss_pred hhhhh
Confidence 76543
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=2.2e-23 Score=204.58 Aligned_cols=219 Identities=12% Similarity=0.097 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+..++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcc
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQ 417 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g 417 (713)
...|++++|+.+|++++. ..|.+. .++..+|.++...|
T Consensus 102 ~~~~~~~~A~~~~~~~~~-~~~~~~-----------------------------------------~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALR-AGMENG-----------------------------------------DLFYMLGTVLVKLE 139 (243)
T ss_dssp HHTTCHHHHHHHHHHHHH-HTCCSH-----------------------------------------HHHHHHHHHHHHTS
T ss_pred HHhccHHHHHHHHHHHHH-hCCCCH-----------------------------------------HHHHHHHHHHHHhc
Confidence 999999999999999998 777652 45566666666666
Q ss_pred CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 005125 418 RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASAR 497 (713)
Q Consensus 418 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 497 (713)
++++|+.+|++++...|+ ...++..+|.++...|++++|+..|++++..+|++..++.
T Consensus 140 ~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------ 197 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNEN----------DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY------------ 197 (243)
T ss_dssp CHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHH------------
T ss_pred cHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH------------
Confidence 666666666666665553 3445666666666667777777777766666666666555
Q ss_pred HHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005125 498 LRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL 540 (713)
Q Consensus 498 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 540 (713)
.+|.++...|++++|+.+|+++++++|++..++..++.+....
T Consensus 198 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 4666666667777777777776666666666666666554443
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=7.6e-22 Score=199.07 Aligned_cols=252 Identities=14% Similarity=0.100 Sum_probs=215.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 005125 301 AALIGLGRQIEALVECKEAIRIDPCY-HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379 (713)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~ 379 (713)
.-.+..|+|.+|+..++++...+|++ .++...++.+|..+|++++|+..++. .+|.. +..+...+..+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~------~~a~~~la~~~~ 76 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPE------LQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChh------HHHHHHHHHHHc
Confidence 45677899999999999988888877 46888999999999999999987754 22322 456667778888
Q ss_pred HhhcHHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHH
Q 005125 380 ELKRWNDLLKETQNVISF--GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVY 457 (713)
Q Consensus 380 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~ 457 (713)
..+++++|+..+++++.. +|++. .+++.+|.++...|++++|+.+|++ | .+..++..+|.+|
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~-~~~~~la~~~~~~g~~~~Al~~l~~-----~----------~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNT-TFLLMAASIYFYDQNPDAALRTLHQ-----G----------DSLECMAMTVQIL 140 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCH-HHHHHHHHHHHHTTCHHHHHHHHTT-----C----------CSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHCCCHHHHHHHHhC-----C----------CCHHHHHHHHHHH
Confidence 889999999999999986 58875 8899999999999999999999998 3 3566899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005125 458 IAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACR 537 (713)
Q Consensus 458 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 537 (713)
..+|++++|+..|+++++.+|++....... .+..++...|++++|+..|+++++..|+++.+++++|.++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~----------a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQDEDATLTQLAT----------AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACH 210 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----------HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCcHHHHHHH----------HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999999999999986443210 1223344569999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHH-------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 538 SKLGQYEKAVEDCTAALIVMPSYSKARL-------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 538 ~~~g~~~~A~~~~~~al~~~p~~~~a~~-------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
..+|++++|+..|+++++++|+++.++. +.+..+++++++++|+++.+...
T Consensus 211 ~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999999999999887 34678999999999999987654
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.90 E-value=9.7e-24 Score=224.27 Aligned_cols=301 Identities=16% Similarity=0.128 Sum_probs=242.3
Q ss_pred chhhhhcCCC--CchhhhHhh---cCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 005125 235 VMGNIVKQPS--GEFPQCISS---LNKLD----PEELKFMGNEAYNKARFEDALALYDRAIAI------NSSKATYRSNK 299 (713)
Q Consensus 235 ~lg~~~~~~~--~~a~~~~~~---~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 299 (713)
.+|.++...| ++|..++++ ..|.+ +.++..+|.+++..|++++|+.+|++++.+ .|....++..+
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3555555555 446666655 45555 357899999999999999999999999887 34457789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 005125 300 SAALIGLGRQIEALVECKEAIRIDPCY------HRAHHRLAMLYFRLGE--------------------AEKAVSHYKKS 353 (713)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~a 353 (713)
|.++...|++++|+.++++++.+.|.. ..++..+|.+|...|+ +++|+.+|.++
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999986643 5589999999999999 99999999999
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh-----HHHHHHHHHHHHHccCHHHHHHHhhc
Q 005125 354 SSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA-----PQVYALQAEALLRLQRHQEAHDSYNK 428 (713)
Q Consensus 354 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~ 428 (713)
+. +.+...........+..++..+...|++++|+..+++++.+.+... ..++..+|.+|...|++++|+.+|++
T Consensus 174 l~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 174 LS-LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HH-HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 98 5433333344456788899999999999999999999998754331 24888999999999999999999999
Q ss_pred cccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 005125 429 SPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASK 508 (713)
Q Consensus 429 al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 508 (713)
++.+.+...... ..+.++..+|.+|...|++++|+.+|++++.+.+....... ....+..+|.++...|+
T Consensus 253 al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 253 TLLLARQLKDRA----VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG------EGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCcCch----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHHHHcCC
Confidence 998776532211 23668899999999999999999999999988655422111 12334479999999999
Q ss_pred HHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHcCCHHHH
Q 005125 509 YKEACYAYSEGLEHEA------YNSVLLCNRAACRSKLGQYEKA 546 (713)
Q Consensus 509 ~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A 546 (713)
+++|+.+|++++++.+ ....++..+|.++..+|+...+
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 9999999999998843 3477899999999999987543
No 41
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=2.8e-22 Score=204.67 Aligned_cols=251 Identities=12% Similarity=0.016 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 005125 276 EDALALYDRAIAINSSKATYRSNKSAALIG-------LGRQ-------IEALVECKEAIR-IDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 276 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 340 (713)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5885 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHH
Q 005125 341 GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQ 420 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 420 (713)
|++++|...|++++. +.|.+. ..+|..+|.++...|+++
T Consensus 113 ~~~~~A~~~~~~al~-~~p~~~----------------------------------------~~~~~~~~~~~~~~~~~~ 151 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA-IEDIDP----------------------------------------TLVYIQYMKFARRAEGIK 151 (308)
T ss_dssp TCHHHHHHHHHHHHT-SSSSCT----------------------------------------HHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHh-ccccCc----------------------------------------cHHHHHHHHHHHHhcCHH
Confidence 999999999999999 888752 127788888899999999
Q ss_pred HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 005125 421 EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA-AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLR 499 (713)
Q Consensus 421 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~l 499 (713)
+|+..|+++++..|.. ..++...+.+... .|++++|+.+|+++++.+|+++.+|. .+
T Consensus 152 ~A~~~~~~a~~~~p~~----------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~~ 209 (308)
T 2ond_A 152 SGRMIFKKAREDARTR----------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL------------AY 209 (308)
T ss_dssp HHHHHHHHHHTSTTCC----------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHH------------HH
T ss_pred HHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH------------HH
Confidence 9999999999887743 3355555555433 79999999999999999999999887 68
Q ss_pred HHHHHHcccHHHHHHHHHHHhcc---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 005125 500 GNLLFKASKYKEACYAYSEGLEH---EAY-NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEML 575 (713)
Q Consensus 500 g~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~a 575 (713)
|..+...|++++|+..|++++.. .|+ ...+|..++..+...|++++|...++++++..|++.....-.....-.+.
T Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~r~~~ 289 (308)
T 2ond_A 210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKF 289 (308)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHHTTTCB
T ss_pred HHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchHHHHHHHHHh
Confidence 99999999999999999999995 553 68899999999999999999999999999999986533222233333356
Q ss_pred HHhCCCCHHHHHHH
Q 005125 576 IREIPGNEEVGRAL 589 (713)
Q Consensus 576 l~~~p~~~~~~~~l 589 (713)
+.++|++++....|
T Consensus 290 l~~~P~~~~~ln~l 303 (308)
T 2ond_A 290 MDLYPCSASELKAL 303 (308)
T ss_dssp TTBCSSCHHHHHTT
T ss_pred cccCCCCHHHHHhc
Confidence 77889998876653
No 42
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=7.7e-21 Score=209.73 Aligned_cols=339 Identities=9% Similarity=-0.027 Sum_probs=264.6
Q ss_pred HHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 005125 213 LYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIA 287 (713)
Q Consensus 213 ~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 287 (713)
|+++++.+|. ....|. . ++.. .+.+ +.|...+++ ..|.++..|..++..+...|++++|+..|++++.
T Consensus 2 le~al~~~P~--~~~~w~---~-l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 2 AEKKLEENPY--DLDAWS---I-LIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHHHHCTT--CHHHHH---H-HHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhhHhhhCCC--CHHHHH---H-HHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 5778888864 233333 2 2332 2334 568888887 7899999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHH-HHHHcCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHH
Q 005125 288 INSSKATYRSNKSA-ALIGLGRQIEALV----ECKEAIRI---DPCYHRAHHRLAMLYFR---------LGEAEKAVSHY 350 (713)
Q Consensus 288 ~~p~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~ 350 (713)
..| +..+|..++. +....|++++|.+ .|++++.. +|....+|..++..... .|++++|...|
T Consensus 75 ~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 75 KVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp TCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred cCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 999 5778888875 4456788777665 78887764 56778888888887765 78899999999
Q ss_pred HHHhhhhccccH--HHHHHHHHH-------------------HHHH---------------------------------H
Q 005125 351 KKSSSLANQKDI--AKAEALHKH-------------------LTKC---------------------------------N 376 (713)
Q Consensus 351 ~~al~~~~p~~~--~~~~~~~~~-------------------~~~~---------------------------------~ 376 (713)
++++. . |... ..+..+..+ +..+ .
T Consensus 154 ~~al~-~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 154 QRGCV-N-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHTT-S-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHh-c-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 99998 5 4321 111100000 0000 0
Q ss_pred HHH-----Hh------hc----HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-------ccCHH-------HHHHHhh
Q 005125 377 EAR-----EL------KR----WNDLLKETQNVISFGADSAPQVYALQAEALLR-------LQRHQ-------EAHDSYN 427 (713)
Q Consensus 377 ~~~-----~~------~~----~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~ 427 (713)
.+. .. ++ ..+++..|++++...|.+. .+|..+|..+.. .|+++ +|+..|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~-~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 000 01 11 1367788999999999885 899999999986 79987 9999999
Q ss_pred cccc-CChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 428 KSPK-FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK-EVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 428 ~al~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
+++. ..|+ ...+|..+|.++...|++++|...|++++++.|.++ .+|. .+|.++.+
T Consensus 311 ~Al~~~~p~----------~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------~~~~~~~~ 368 (530)
T 2ooe_A 311 RAISTLLKK----------NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYI------------QYMKFARR 368 (530)
T ss_dssp HHTTTTCSS----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHH------------HHHHHHHH
T ss_pred HHHHHhCcc----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHH------------HHHHHHHH
Confidence 9997 7774 566899999999999999999999999999999985 4665 68889999
Q ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHH
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAAC-RSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDY 572 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~ 572 (713)
.|++++|+..|++|++..|.....+...+.+ +...|++++|...|+++++..|+++.+|. ++|...|
T Consensus 369 ~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 369 AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 9999999999999999999888888777765 45699999999999999999999998887 8999999
Q ss_pred HHHHHhCCCCHH
Q 005125 573 EMLIREIPGNEE 584 (713)
Q Consensus 573 ~~al~~~p~~~~ 584 (713)
++++...|.+++
T Consensus 449 ~~al~~~~~~~~ 460 (530)
T 2ooe_A 449 ERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHSCCSCGG
T ss_pred HHHHhccCCCHH
Confidence 999999887765
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=6.8e-22 Score=195.32 Aligned_cols=215 Identities=13% Similarity=0.071 Sum_probs=148.6
Q ss_pred cCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 254 LNKLD-PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 254 ~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
.+|.+ +.+++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|.+..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34443 45555566666666666666666666665555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA 412 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 412 (713)
+|.+|...|++++|+.+|++++. . +
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~-~-~----------------------------------------------------- 135 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQ-D-T----------------------------------------------------- 135 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT-C-T-----------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh-C-c-----------------------------------------------------
Confidence 55555555555555555555443 0 0
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 492 (713)
..| ....++..+|.++...|++++|+.+|+++++..|.+..++.
T Consensus 136 -------------------~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------- 179 (252)
T 2ho1_A 136 -------------------LYP----------ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL------- 179 (252)
T ss_dssp -------------------TCT----------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH-------
T ss_pred -------------------cCc----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHH-------
Confidence 222 13446677788888888888888888888888888877776
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.+|.++...|++++|+..|+++++..|.+..++..++.++...|++++|..+++++++++|++..++
T Consensus 180 -----~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 180 -----EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp -----HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred -----HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 5888888888999999999888888888888888888888888999888888888888888876543
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=7.5e-22 Score=197.62 Aligned_cols=249 Identities=12% Similarity=-0.023 Sum_probs=211.1
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCCCchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRA 285 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 285 (713)
.++|+..|+++++..|.. .|.++.+++.+|.++...|++++|+.+|+++
T Consensus 21 ~~~A~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (275)
T 1xnf_A 21 QEVILARMEQILASRALT-------------------------------DDERAQLLYERGVLYDSLGLRALARNDFSQA 69 (275)
T ss_dssp HHHHHHHHHHHHTSSCCC-------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccc-------------------------------CchhHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 359999999999875321 1233557999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHH
Q 005125 286 IAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365 (713)
Q Consensus 286 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 365 (713)
++.+|.++.++..+|.++...|++++|+.+|+++++++|++..++..+|.+|...|++++|+.+|++++. +.|.+....
T Consensus 70 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~ 148 (275)
T 1xnf_A 70 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ-DDPNDPFRS 148 (275)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred HHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCChHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999885221
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccC
Q 005125 366 EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAG 445 (713)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 445 (713)
.........|++++|+..+++++...|... .. ..++.++...++.++|+..+++++...|.... .
T Consensus 149 -------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~ 213 (275)
T 1xnf_A 149 -------LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ-WG-WNIVEFYLGNISEQTLMERLKADATDNTSLAE------H 213 (275)
T ss_dssp -------HHHHHHHHHHCHHHHHHHHHHHHHHSCCCS-TH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH------H
T ss_pred -------HHHHHHHHhcCHHHHHHHHHHHHhcCCcch-HH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccc------c
Confidence 112233567999999999999999988874 33 44688888999999999999999998876432 2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAY 516 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 516 (713)
.+.++..+|.+|...|++++|+.+|++++.++|++... .+.++...|++++|++.|
T Consensus 214 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------------~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---------------HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---------------HHHHHHHHHHHHHC----
T ss_pred ccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---------------HHHHHHHHHHHHhhHHHH
Confidence 36789999999999999999999999999999987442 466788899999999887
No 45
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=5.1e-23 Score=222.93 Aligned_cols=217 Identities=14% Similarity=0.129 Sum_probs=202.5
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQ-IEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHY 350 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 350 (713)
.+.+++|+..+.++....|.++.+++.+|.++...|++ ++|+.+|+++++++|++..+|+.+|.+|...|++++|+.+|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44588899999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc---------cCHHH
Q 005125 351 KKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL---------QRHQE 421 (713)
Q Consensus 351 ~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~---------g~~~~ 421 (713)
+++++ ++|+. .++..+|.+|... |++++
T Consensus 161 ~~al~-~~p~~------------------------------------------~~~~~lg~~~~~~~~~~~~~~~g~~~~ 197 (474)
T 4abn_A 161 SGALT-HCKNK------------------------------------------VSLQNLSMVLRQLQTDSGDEHSRHVMD 197 (474)
T ss_dssp HHHHT-TCCCH------------------------------------------HHHHHHHHHHTTCCCSCHHHHHHHHHH
T ss_pred HHHHh-hCCCH------------------------------------------HHHHHHHHHHHHhccCChhhhhhhHHH
Confidence 99999 77762 6778889999999 99999
Q ss_pred HHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHH
Q 005125 422 AHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA--------GRFEDAVKTAQDAAQIDP---NNKEVIKGVKMA 490 (713)
Q Consensus 422 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~ 490 (713)
|+.+|++++++.|+ ++.+|+.+|.+|... |++++|+.+|+++++++| +++.++.
T Consensus 198 A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----- 262 (474)
T 4abn_A 198 SVRQAKLAVQMDVL----------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL----- 262 (474)
T ss_dssp HHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHH-----
T ss_pred HHHHHHHHHHhCCC----------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHH-----
Confidence 99999999999885 566899999999999 999999999999999999 8998887
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 553 (713)
++|.++...|++++|+..|+++++++|+++.++.+++.++..+|++++|+..+.+.
T Consensus 263 -------~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 263 -------NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp -------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 79999999999999999999999999999999999999999999999999877543
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=2.5e-22 Score=201.06 Aligned_cols=228 Identities=11% Similarity=-0.038 Sum_probs=166.2
Q ss_pred HHHhcCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005125 269 AYNKARFEDALALYDRAIAIN----SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAE 344 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 344 (713)
+...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+.+|++++.++|++..++..+|.+|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 345689999999999999974 4567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHH
Q 005125 345 KAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHD 424 (713)
Q Consensus 345 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 424 (713)
+|+.+|++++. ++|.+. .++..+|.+|...|++++|+.
T Consensus 95 ~A~~~~~~al~-~~~~~~-----------------------------------------~~~~~la~~~~~~g~~~~A~~ 132 (275)
T 1xnf_A 95 AAYEAFDSVLE-LDPTYN-----------------------------------------YAHLNRGIALYYGGRDKLAQD 132 (275)
T ss_dssp HHHHHHHHHHH-HCTTCT-----------------------------------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHh-cCcccc-----------------------------------------HHHHHHHHHHHHhccHHHHHH
Confidence 99999999999 888763 455556666666666666666
Q ss_pred HhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 425 SYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLF 504 (713)
Q Consensus 425 ~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~ 504 (713)
+|++++...|+.. .....++ ++...|++++|+..|++++...|.+...+. ++.++.
T Consensus 133 ~~~~a~~~~~~~~----------~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 188 (275)
T 1xnf_A 133 DLLAFYQDDPNDP----------FRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-------------IVEFYL 188 (275)
T ss_dssp HHHHHHHHCTTCH----------HHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-------------HHHHHT
T ss_pred HHHHHHHhCCCCh----------HHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHH-------------HHHHHH
Confidence 6666666555432 1222222 224456666666666666666666554442 555566
Q ss_pred HcccHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 505 KASKYKEACYAYSEGLEHEAYN----SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 505 ~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
..+++++|+..+++++...|.. +.++..+|.+|..+|++++|+..|+++++++|++..
T Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 189 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 6666666666666666665532 566666666666666666666666666666665543
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=1.9e-22 Score=197.96 Aligned_cols=210 Identities=18% Similarity=0.127 Sum_probs=178.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 371 (713)
.+..++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++++. .+|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~---------- 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE-LDSSA---------- 90 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTC----------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc----------
Confidence 3568889999999999999999999999999999999999999999999999999999999999 77766
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 451 (713)
..++..+|.++...|++++|+.+|++++...|+ ...++.
T Consensus 91 -------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~ 129 (243)
T 2q7f_A 91 -------------------------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME----------NGDLFY 129 (243)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC----------SHHHHH
T ss_pred -------------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----------CHHHHH
Confidence 377888899999999999999999999988774 456889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHH
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLC 531 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 531 (713)
.+|.++...|++++|+.+|+++++..|++..++. .+|.++...|++++|+..|+++++..|+++.++.
T Consensus 130 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 197 (243)
T 2q7f_A 130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEARF------------QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY 197 (243)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 9999999999999999999999999999988877 6999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 532 NRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 532 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+|.+|..+|++++|+.+|+++++++|++..++.
T Consensus 198 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 9999999999999999999999999999987765
No 48
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=2.9e-21 Score=187.77 Aligned_cols=222 Identities=14% Similarity=0.159 Sum_probs=186.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINS-SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+.+++.++.+|..++..|++++|+.+|+++++.+| .+..+++.+|.++..+|++++|+.+|+++++++|++..++..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 356789999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
|.+|..+|++++|+.+|++++. ++|++......+ ..++..+|.++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~----------------------------------~~~~~~~g~~~ 127 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIK-AVPGNATIEKLY----------------------------------AIYYLKEGQKF 127 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHH----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH-HCCCcHHHHHHH----------------------------------HHHHHHHhHHH
Confidence 9999999999999999999999 999875321111 25678889999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
...|++++|+.+|++++++.|+.. .+.+++.+|.+|...| ...++++..+.+.....+
T Consensus 128 ~~~~~~~~A~~~~~~al~~~p~~~--------~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--------- 185 (228)
T 4i17_A 128 QQAGNIEKAEENYKHATDVTSKKW--------KTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--------- 185 (228)
T ss_dssp HHTTCHHHHHHHHHHHTTSSCHHH--------HHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH---------
T ss_pred HHhccHHHHHHHHHHHHhcCCCcc--------cHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH---------
Confidence 999999999999999999888610 2347888898886554 455677777777665443
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRS 538 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 538 (713)
.+......+.|++|+.+|+++++++|++..++..++.+..
T Consensus 186 -----~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 186 -----ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 3444556778899999999999999999888888877654
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=3.9e-22 Score=186.87 Aligned_cols=173 Identities=15% Similarity=0.167 Sum_probs=155.7
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
+++.+|+.+|.++...|++++|+.+|+++++++|+++.++..+|.+|..+|++++|+..+++++...|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL 416 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 416 (713)
+...++++.|+..+.+++. ++|.+. .++..+|.+|..+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~-~~~~~~-----------------------------------------~~~~~lg~~~~~~ 120 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA-LNTVYA-----------------------------------------DAYYKLGLVYDSM 120 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHH-hCccch-----------------------------------------HHHHHHHHHHHHh
Confidence 9999999999999999999 888873 6777778888888
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
|++++|+.+|+++++++|+ ++.+++.+|.+|..+|++++|+.+|+++++++|+++
T Consensus 121 g~~~~A~~~~~~~l~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 121 GEHDKAIEAYEKTISIKPG----------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred CCchhHHHHHHHHHHhcch----------hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 8888888888888888774 455788888888888888888888888888888754
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=2.1e-21 Score=187.73 Aligned_cols=213 Identities=14% Similarity=0.078 Sum_probs=135.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHH
Q 005125 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH 369 (713)
Q Consensus 290 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~ 369 (713)
|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|++++. ..|.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------- 76 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS-IKPDSA------- 76 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH-------
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCh-------
Confidence 333444444444444444444444444444444444444444455555555555555555544444 444331
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc-cCHHHHHHHhhccccCChhhHHhhhcccCcHH
Q 005125 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL-QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAY 448 (713)
Q Consensus 370 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (713)
.++..+|.++... |++++|+.+|++++. .|.. +....
T Consensus 77 ----------------------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~-------~~~~~ 114 (225)
T 2vq2_A 77 ----------------------------------EINNNYGWFLCGRLNRPAESMAYFDKALA-DPTY-------PTPYI 114 (225)
T ss_dssp ----------------------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTC-------SCHHH
T ss_pred ----------------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCC-------cchHH
Confidence 3344444455555 555555555555444 1110 02345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-CCH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA-YNS 527 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~ 527 (713)
++..+|.++...|++++|+.+|+++++..|.+..++. .+|.++...|++++|+..|+++++..| .+.
T Consensus 115 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 182 (225)
T 2vq2_A 115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK------------ELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 6777788888888888888888888888888877766 588888888888888888888888888 888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 528 VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 528 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
..+..++.++...|++++|..+++.+++.+|+++.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 183 DDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 8888888888888888888888888888888776543
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=7.5e-22 Score=184.91 Aligned_cols=172 Identities=14% Similarity=0.081 Sum_probs=121.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHH
Q 005125 291 SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHK 370 (713)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~ 370 (713)
+++.+|+++|.+|...|++++|+.+|+++++++|+++.++..+|.+|..+|++++|+..+.+++. ..|.+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~-~~~~~~-------- 73 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV-LDTTSA-------- 73 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCCH--------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCchhH--------
Confidence 45667778888888888888888888888888888888888888888888888888887777777 665542
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHH
Q 005125 371 HLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLL 450 (713)
Q Consensus 371 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 450 (713)
. ++
T Consensus 74 ---------------------------------~--------------------------------------------~~ 76 (184)
T 3vtx_A 74 ---------------------------------E--------------------------------------------AY 76 (184)
T ss_dssp ---------------------------------H--------------------------------------------HH
T ss_pred ---------------------------------H--------------------------------------------HH
Confidence 2 34
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHH
Q 005125 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLL 530 (713)
Q Consensus 451 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 530 (713)
..+|.++...++++.|+..+.+++.++|.+..++. .+|.++..+|++++|+..|+++++++|+++.+|
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 144 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNTVYADAYY------------KLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAY 144 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH------------HHHHHHHHhCCchhHHHHHHHHHHhcchhhhHH
Confidence 44566666666666666666666666666666665 466777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 531 CNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 531 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+++|.+|..+|++++|+.+|++|++++|++
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 777777777777777777777777666654
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.89 E-value=1.8e-22 Score=215.15 Aligned_cols=281 Identities=14% Similarity=0.095 Sum_probs=230.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHH
Q 005125 291 SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH----RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE 366 (713)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~ 366 (713)
.....+..+|.++...|++++|+.+|++++++.|++. .++..+|.+|...|++++|+.+|++++. +.........
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT-LAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHccCchH
Confidence 3355677899999999999999999999999999986 5899999999999999999999999998 5322222234
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC-----CCChHHHHHHHHHHHHHccC-----------------HHHHHH
Q 005125 367 ALHKHLTKCNEARELKRWNDLLKETQNVISFG-----ADSAPQVYALQAEALLRLQR-----------------HQEAHD 424 (713)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~la~~~~~~g~-----------------~~~A~~ 424 (713)
....+..++..+...|++++|+..+++++... +.....++..+|.+|...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 45778889999999999999999999999873 22234788999999999999 999999
Q ss_pred HhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 425 SYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLF 504 (713)
Q Consensus 425 ~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~ 504 (713)
+|++++.+.+..... ...+.++..+|.+|...|++++|+.+|++++++.+....... ....+..+|.++.
T Consensus 205 ~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~ 274 (411)
T 4a1s_A 205 FYQENLKLMRDLGDR----GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA------ERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHHH
Confidence 999998765443211 134668999999999999999999999999998765332111 1233457999999
Q ss_pred HcccHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHH-------
Q 005125 505 KASKYKEACYAYSEGLEHEAYN------SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS------KARL------- 565 (713)
Q Consensus 505 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~------- 565 (713)
..|++++|+.+|++++++.+.. ..++..+|.+|..+|++++|+.+|++++++.+... .++.
T Consensus 275 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 354 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHS 354 (411)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999987744 67899999999999999999999999999865432 1222
Q ss_pred -----HHHHHHHHHHHHhCCCC
Q 005125 566 -----EAAIQDYEMLIREIPGN 582 (713)
Q Consensus 566 -----~~A~~~~~~al~~~p~~ 582 (713)
++|+..|++++++.+..
T Consensus 355 ~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 355 AIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHH
T ss_pred HhccHHHHHHHHHHHHHHHhhc
Confidence 88999999999887643
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=3.5e-21 Score=190.20 Aligned_cols=202 Identities=16% Similarity=0.101 Sum_probs=179.2
Q ss_pred cccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 232 RNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGL 306 (713)
Q Consensus 232 ~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 306 (713)
....+|.++...+ ++|...+++ ..|.++.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 3445888888888 678888887 78999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcH
Q 005125 307 GRQIEALVECKEAIR--IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384 (713)
Q Consensus 307 g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (713)
|++++|+.+|++++. ..|.+..++..+|.++...|++++|+.+|++++. ..|.+
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~----------------------- 174 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR-LNRNQ----------------------- 174 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSCC-----------------------
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCccc-----------------------
Confidence 999999999999999 8899999999999999999999999999999999 77765
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHH
Q 005125 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFE 464 (713)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 464 (713)
+.++..+|.++...|++++|+.+|++++...|+ ...++..++.++...|+++
T Consensus 175 ------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 175 ------------------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQ----------NARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC----------CHHHHHHHHHHHHHTTCHH
T ss_pred ------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----------cHHHHHHHHHHHHHccCHH
Confidence 267778888888888888888888888887763 4557788888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHH
Q 005125 465 DAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 465 ~A~~~~~~al~~~p~~~~~~~ 485 (713)
+|..+++++++..|+++....
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888877664
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=1.2e-20 Score=182.49 Aligned_cols=217 Identities=10% Similarity=-0.027 Sum_probs=191.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
.|.++.+++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++++..+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 335 MLYFRL-GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 335 ~~~~~~-g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
.++... |++++|+.+|++++. . |.+ |. ...++..+|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~-~~~-------------------------------------~~-~~~~~~~l~~~~ 123 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-D-PTY-------------------------------------PT-PYIANLNKGICS 123 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-S-TTC-------------------------------------SC-HHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-C-cCC-------------------------------------cc-hHHHHHHHHHHH
Confidence 999999 999999999999987 2 211 11 136778888999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP-NNKEVIKGVKMAKA 492 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~ 492 (713)
...|++++|+.+|++++...|+ ...++..+|.++...|++++|+.+|++++...| .+...+.
T Consensus 124 ~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------- 186 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAAQPQ----------FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL------- 186 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHH-------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC----------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH-------
Confidence 9999999999999998887774 455788899999999999999999999999999 8887775
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNR 533 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 533 (713)
.++.++...|++++|..+++.+++..|+++.+...+
T Consensus 187 -----~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 187 -----LGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp -----HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 578888889999999999999988999888776544
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=9.4e-22 Score=202.65 Aligned_cols=278 Identities=13% Similarity=0.063 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHH
Q 005125 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY----HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368 (713)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 368 (713)
...+...|.++...|++++|+.+|+++++..|++ ..++..+|.+|...|++++|+.+|++++. +.+.........
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-LARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhcccccHHHH
Confidence 3467788999999999999999999999999998 47889999999999999999999999998 543322233445
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-----hHHHHHHHHHHHHHccC--------------------HHHHH
Q 005125 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADS-----APQVYALQAEALLRLQR--------------------HQEAH 423 (713)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~--------------------~~~A~ 423 (713)
..+..++..+...|++++|+..+++++.+.+.. ...++..+|.++...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 678889999999999999999999999875432 13588899999999999 99999
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
.++++++.+.+..... ...+.++..+|.++...|++++|+.+|++++.+.+....... ....+..+|.++
T Consensus 164 ~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~l~~~~ 233 (338)
T 3ro2_A 164 DLYEENLSLVTALGDR----AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH------HHHHHHHHHHHH
Confidence 9999998764432211 124568999999999999999999999999987654322111 123445799999
Q ss_pred HHcccHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHH------
Q 005125 504 FKASKYKEACYAYSEGLEHEAYN------SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK------ARL------ 565 (713)
Q Consensus 504 ~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~------ 565 (713)
...|++++|+.+|++++.+.+.. ..++..+|.++..+|++++|+.++++++++.+.... ++.
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99999999999999999887654 778999999999999999999999999998654321 222
Q ss_pred ------HHHHHHHHHHHHhCCC
Q 005125 566 ------EAAIQDYEMLIREIPG 581 (713)
Q Consensus 566 ------~~A~~~~~~al~~~p~ 581 (713)
++|+..|++++++.+.
T Consensus 314 ~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC---
T ss_pred HHcCChHHHHHHHHHHHHHHHh
Confidence 7888888888887654
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=1e-21 Score=212.68 Aligned_cols=204 Identities=16% Similarity=0.148 Sum_probs=186.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARF-EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
..|.++.+++.+|.++...|++ ++|+.+|+++++++|+++.+|+.+|.+|...|++++|+.+|+++++++|+ ..++..
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 175 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN 175 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHH
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHH
Confidence 5677889999999999999999 99999999999999999999999999999999999999999999999999 799999
Q ss_pred HHHHHHHc---------CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChH
Q 005125 333 LAMLYFRL---------GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP 403 (713)
Q Consensus 333 la~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 403 (713)
+|.+|..+ |++++|+.+|+++++ ++|++ +
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~-----------------------------------------~ 213 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ-MDVLD-----------------------------------------G 213 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-HCTTC-----------------------------------------H
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-hCCCC-----------------------------------------H
Confidence 99999999 888888888888888 77776 3
Q ss_pred HHHHHHHHHHHHc--------cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 404 QVYALQAEALLRL--------QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 404 ~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
.+|..+|.+|... |++++|+.+|++++.+.|... ..+.+++++|.+|...|++++|+.+|+++++
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS-------SNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG-------GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc-------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7888899999999 999999999999999888311 2566899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005125 476 IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEG 519 (713)
Q Consensus 476 ~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 519 (713)
++|++..++. .++.++...|++++|+..+.+.
T Consensus 287 l~p~~~~a~~------------~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 287 LDPAWPEPQQ------------REQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HCTTCHHHHH------------HHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCCCHHHHH------------HHHHHHHHHHHHHHHHHHhccc
Confidence 9999999887 6999999999999999877654
No 57
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=6.2e-20 Score=202.47 Aligned_cols=318 Identities=12% Similarity=-0.001 Sum_probs=244.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+|.+..+|..++.. ...|++++|...|+++++.+|.+..+|..++..+...|++++|+..|++++...| +...|..+
T Consensus 8 ~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~ 85 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCY 85 (530)
T ss_dssp HCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHH
T ss_pred hCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHH
Confidence 689999999999984 7899999999999999999999999999999999999999999999999999999 57788888
Q ss_pred HH-HHHHcCCHHHHHH----HHHHHhhh--hccccHHHHHHHHHHHHHHHHHH---------HhhcHHHHHHHHHHHHHc
Q 005125 334 AM-LYFRLGEAEKAVS----HYKKSSSL--ANQKDIAKAEALHKHLTKCNEAR---------ELKRWNDLLKETQNVISF 397 (713)
Q Consensus 334 a~-~~~~~g~~~~A~~----~~~~al~~--~~p~~~~~~~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~al~~ 397 (713)
+. +....|++++|.+ .|++++.. .+|.... .+...+.... ..|+++.|...|++++.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~------~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~- 158 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ------IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV- 158 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHH------HHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHH------HHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence 85 4456788877765 78887761 2343332 2222222222 26889999999999998
Q ss_pred CCCCh-HHHHHHHHHHH-------------HHccCHHHHHHHhhc------cccC-----Chhh----------------
Q 005125 398 GADSA-PQVYALQAEAL-------------LRLQRHQEAHDSYNK------SPKF-----CLEY---------------- 436 (713)
Q Consensus 398 ~p~~~-~~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~~~~---------------- 436 (713)
.|... ..+|....... ...+++.+|...|.. ++.. .|..
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 46542 22332221111 123445555544333 2211 1110
Q ss_pred ----------------------HH-hhhcccCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCC
Q 005125 437 ----------------------YT-KLFGLAGGAYLLIVRAQVYIA-------AGRFE-------DAVKTAQDAAQ-IDP 478 (713)
Q Consensus 437 ----------------------~~-~~~~~~~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~p 478 (713)
.. .....+..+.+|+.+|..+.. .|+++ +|+..|++|++ +.|
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 00 000012457789999999986 79987 99999999997 899
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 479 NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS-VLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
++..+|. .+|.++...|++++|...|++++++.|.++ .+|.+++.++.+.|++++|+..|++|++..
T Consensus 319 ~~~~l~~------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 319 KNMLLYF------------AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp SCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ccHHHHH------------HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 9999988 689999999999999999999999999885 699999999999999999999999999998
Q ss_pred CCChHHHH-------------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 558 PSYSKARL-------------EAAIQDYEMLIREIPGNEEVGRALFEA 592 (713)
Q Consensus 558 p~~~~a~~-------------~~A~~~~~~al~~~p~~~~~~~~l~~~ 592 (713)
|.....+. ++|...|+++++..|+++.++..+...
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 87655433 789999999999999999888776554
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=5.8e-22 Score=202.21 Aligned_cols=264 Identities=16% Similarity=0.076 Sum_probs=198.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAI--------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--- 322 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 322 (713)
.+|..+.++..+|.+++..|++++|+.+|++++++ .|....++..+|.++...|++++|+.+|++++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999995 5667889999999999999999999999999987
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHc
Q 005125 323 -----DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF 397 (713)
Q Consensus 323 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 397 (713)
.|....++..+|.+|...|++++|+.+|++++. +.... ...
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~---------------------------------~~~ 147 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE-IREKV---------------------------------LGK 147 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHH---------------------------------HCT
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHh---------------------------------cCC
Confidence 355688999999999999999999999999998 42100 000
Q ss_pred CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 398 GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 398 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
++.....++..+|.++...|++++|+.+|++++......... .......++..+|.+|...|++++|+.+|+++++..
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP--DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT--TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 000113678888999999999999999999998862211000 001245688999999999999999999999999764
Q ss_pred CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 478 PN---------NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE 548 (713)
Q Consensus 478 p~---------~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 548 (713)
+. ....+.. ...+...+..+...+.+.+|+..+++++...|..+.++..+|.+|..+|++++|+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMH------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp HHHHHC------CCHHHH------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCCCCcchHHHHHH------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 32 2222221 23344577777888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 005125 549 DCTAALIVMPS 559 (713)
Q Consensus 549 ~~~~al~~~p~ 559 (713)
+|++++++.|+
T Consensus 300 ~~~~al~l~~~ 310 (311)
T 3nf1_A 300 LEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhc
Confidence 99999998875
No 59
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=2.3e-21 Score=217.88 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
+++++|.+|..+|++++|+++|+++++++|++..++. ++|.++..+|++++|+.+|+++++++|+++.
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~------------~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 146 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS------------NLASIHKDSGNIPEAIASYRTALKLKPDFPD 146 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 4455566666666666666666666666666666665 5666666666666666666666666666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
++.++|.+|..+|++++|++.+++++++.|+
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 6666777777777777776666666665443
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=6.2e-20 Score=197.40 Aligned_cols=316 Identities=14% Similarity=0.069 Sum_probs=235.4
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC-----CchhhhHhh-cCCCCHHHHHHHHHHHHHhc-----CH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS-----GEFPQCISS-LNKLDPEELKFMGNEAYNKA-----RF 275 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~-----~~a~~~~~~-~~~~~~~~~~~lg~~~~~~g-----~~ 275 (713)
++|+..|+++.+.. ... ....+|.++...+ ++|..++++ ... ++.+++.+|.+++..+ ++
T Consensus 20 ~~A~~~~~~aa~~g----~~~----A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 20 VTAQQNYQQLAELG----YSE----AQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHT----CCT----GGGTCC-----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HHHHHHHHHHHHCC----CHH----HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCH
Confidence 49999999998765 223 3345888887766 468888888 545 9999999999777765 89
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHH
Q 005125 276 EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA---LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEK----AVS 348 (713)
Q Consensus 276 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~ 348 (713)
++|+.+|+++++. +++.+++.+|.+|...+...++ ...+.++.. +.++.+++.+|.+|...+.+++ +..
T Consensus 91 ~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 91 HEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 9999999999985 4556899999999988765544 444444433 3457899999999999985544 444
Q ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc----cCHHH
Q 005125 349 HYKKSSSLANQKDIAKAEALHKHLTKCNEARELK---RWNDLLKETQNVISFGADSAPQVYALQAEALLRL----QRHQE 421 (713)
Q Consensus 349 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~----g~~~~ 421 (713)
+++.+.. .+|. .++.++..+...| ++++|+..|+++...++... ..++.+|.+|... +++++
T Consensus 167 ~~~~a~~-~~~~---------a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a-~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 167 ICKAALN-TTDI---------CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA-QRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHTT-TCTT---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHc-CCHH---------HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHhCCCCCCCCHHH
Confidence 5555555 5553 5677888888899 99999999999999999885 6668889999766 79999
Q ss_pred HHHHhhccccCChhhHHhhhcccCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 422 AHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQV-Y--IAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 422 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
|+.+|+++. |+ ++.+++.+|.+ | ...+++++|+.+|+++++.. ++.++. +
T Consensus 236 A~~~~~~aa---~g----------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~------------~ 288 (452)
T 3e4b_A 236 AQALLEKIA---PG----------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAEL------------L 288 (452)
T ss_dssp HHHHHHHHG---GG----------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHH------------H
T ss_pred HHHHHHHHc---CC----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHH------------H
Confidence 999999997 43 56689999998 4 46899999999999998654 777776 6
Q ss_pred HHHHHHHcc-----cHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHH----
Q 005125 499 RGNLLFKAS-----KYKEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMPSYSKARL---- 565 (713)
Q Consensus 499 lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~---- 565 (713)
+|.+|. .| ++++|+.+|+++. +.++.++++||.+|.. ..++++|+.+|+++.+... +.+.+
T Consensus 289 Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~ 362 (452)
T 3e4b_A 289 LGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--NSADFAIAQ 362 (452)
T ss_dssp HHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--HHHHHHHHH
Confidence 999988 66 9999999999999 8899999999999987 4499999999999988543 44433
Q ss_pred ------------HHHHHHHHHHHHhC
Q 005125 566 ------------EAAIQDYEMLIREI 579 (713)
Q Consensus 566 ------------~~A~~~~~~al~~~ 579 (713)
.+|+.+|+++.+..
T Consensus 363 ~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 363 LFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 78999999888764
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=1.8e-21 Score=218.66 Aligned_cols=174 Identities=20% Similarity=0.191 Sum_probs=151.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|+++++|..+|.++..+|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
|.+|..+|++++|+++|+++++ ++|++. .++.++|.+|
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~-l~P~~~-----------------------------------------~a~~~Lg~~~ 121 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQ-INPAFA-----------------------------------------DAHSNLASIH 121 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCCCCH-----------------------------------------HHHHHHHHHH
Confidence 9999999999999999999999 999873 6677777777
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
..+|++++|+.+|++++++.|+ .+.++.++|.+|..+|++++|++.|++++++.|+
T Consensus 122 ~~~g~~~eAi~~~~~Al~l~P~----------~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 122 KDSGNIPEAIASYRTALKLKPD----------FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC----------ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 7777777777777777777764 4456777777777777777777777777766443
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.86 E-value=5.4e-21 Score=201.78 Aligned_cols=248 Identities=12% Similarity=0.065 Sum_probs=200.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAI---NS---SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC-------YHR 328 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~---~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~ 328 (713)
++.+|..++..|++++|+.+|++++++ .+ ..+.+++.+|.+|..+|++++|+.++++++++.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 445999999999999999999999987 22 24679999999999999999999999999998443 356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYAL 408 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 408 (713)
++..+|.+|..+|++++|+.+|++++. +.+...... ....++.+
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~-----------------------------------~~~~~~~~ 229 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYS-MAEAEKQPQ-----------------------------------LMGRTLYN 229 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHcCChH-----------------------------------HHHHHHHH
Confidence 899999999999999999999999998 544321000 01267888
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN--NKEVIKG 486 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 486 (713)
+|.+|..+|++++|+.+|++++.+.+.... ....+.++..+|.+|...|++++|+.+|++++++.+. ++....
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 304 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNI----LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS- 304 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-
Confidence 999999999999999999999985332211 0134678999999999999999999999999987543 222211
Q ss_pred HHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 487 VKMAKAMASARLRGNLLFKASK---YKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.+..+|.++...|+ +++|+..+++. ...|....++..+|.+|..+|++++|+.+|++++++...
T Consensus 305 --------~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 305 --------EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp --------HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred --------HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 12369999999999 88999999887 445556778999999999999999999999999987543
No 63
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=1.6e-19 Score=180.70 Aligned_cols=219 Identities=16% Similarity=0.111 Sum_probs=192.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccccHHH
Q 005125 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR----LGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
+|+++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++ .+ +
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~--~--- 73 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN--Y--- 73 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT--C---
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC--C---
Confidence 578899999999999999999999999999998 7888999999999999 9999999999999988 43 2
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH----ccCHHHHHHHhhccccCChhhHHhh
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR----LQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
+.++..+|.+|.. .+++++|+.+|++++...
T Consensus 74 --------------------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------- 108 (273)
T 1ouv_A 74 --------------------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------- 108 (273)
T ss_dssp --------------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred --------------------------------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-------
Confidence 3788889999999 999999999999998752
Q ss_pred hcccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHH
Q 005125 441 FGLAGGAYLLIVRAQVYIA----AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEA 512 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A 512 (713)
.+.+++.+|.+|.. .+++++|+.+|+++++.+ +..++. ++|.++.. .+++++|
T Consensus 109 -----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~------------~lg~~~~~~~~~~~~~~~A 169 (273)
T 1ouv_A 109 -----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCT------------ILGSLYDAGRGTPKDLKKA 169 (273)
T ss_dssp -----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHH------------HHHHHHHHTSSSCCCHHHH
T ss_pred -----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHH------------HHHHHHHcCCCCCCCHHHH
Confidence 45689999999999 999999999999999976 555555 69999998 9999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHH----------------HHHHHHH
Q 005125 513 CYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMPSYSKARL----------------EAAIQDY 572 (713)
Q Consensus 513 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~----------------~~A~~~~ 572 (713)
+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++..| ..+++ ++|+.+|
T Consensus 170 ~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 170 LASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENF 245 (273)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 9999999987 468999999999999 9999999999999999977 33333 6899999
Q ss_pred HHHHHhCCCCH
Q 005125 573 EMLIREIPGNE 583 (713)
Q Consensus 573 ~~al~~~p~~~ 583 (713)
++++++.|++.
T Consensus 246 ~~a~~~~~~~a 256 (273)
T 1ouv_A 246 KKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHTCHHH
T ss_pred HHHHHcCCHHH
Confidence 99999987644
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=1.2e-19 Score=176.34 Aligned_cols=169 Identities=13% Similarity=0.058 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 484 (713)
+++.+|.++...|++++|+.+|++++...|+ .+.++..+|.+|..+|++++|+..|+++++++|+++..+
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 113 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYN----------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIE 113 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3333455555555555555555555554443 234677788899999999999999999999999988553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY--NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
..+ ...+..+|.++...|++++|+..|+++++++|+ ++.++.++|.+|..+|+ ..++++..+.+....
T Consensus 114 ~~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~ 183 (228)
T 4i17_A 114 KLY-----AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKE 183 (228)
T ss_dssp HHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHH
T ss_pred HHH-----HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHH
Confidence 321 233458999999999999999999999999999 99999999999987664 445666666555543
Q ss_pred HHH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 563 ARL----------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 563 a~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
.+. ++|+..|+++++++|++.++...+....
T Consensus 184 ~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 184 KYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 322 8999999999999999999888776544
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=3.8e-20 Score=188.85 Aligned_cols=239 Identities=10% Similarity=-0.036 Sum_probs=191.1
Q ss_pred CCCHHHHHHHHHHHHH-------hcCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYN-------KARF-------EDALALYDRAIA-INSSKATYRSNKSAALIGLGRQIEALVECKEAI 320 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 320 (713)
|.++++|+.+|..+.. .|++ ++|+..|++|++ ++|++..+|..+|.++...|++++|+..|++++
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455567777777763 5775 999999999999 799999999999999999999999999999999
Q ss_pred HhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH-HhhcHHHHHHHHHHHHHcC
Q 005125 321 RIDPCYHR-AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR-ELKRWNDLLKETQNVISFG 398 (713)
Q Consensus 321 ~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~ 398 (713)
+++|.++. +|..+|.++...|++++|+..|+++++ ..|... ..++..+.... ..|++++|+..|+++++..
T Consensus 127 ~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~p~~~------~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 127 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-DARTRH------HVYVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-STTCCT------HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred hccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999987 999999999999999999999999999 888763 22333333322 2688999999999999998
Q ss_pred CCChHHHHHHHHHHHHHccCHHHHHHHhhccccC---ChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 399 ADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF---CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 399 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
|++. .+|..+|.++...|++++|+.+|++++.. .|+ ....+|..++..+...|++++|...++++++
T Consensus 200 p~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~---------~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 200 GDIP-EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE---------KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp TTCH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG---------GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8874 78888888898999999999999998875 332 2455788888888889999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005125 476 IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535 (713)
Q Consensus 476 ~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 535 (713)
..|++..... ++.+ ..-.+.+.++|.++..+..||.
T Consensus 270 ~~p~~~~~~~-------------~~~~-----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 270 AFREEYEGKE-------------TALL-----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HTTTTTSSCH-------------HHHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred Hcccccccch-------------HHHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence 8887654322 1111 1111667788888888877663
No 66
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.84 E-value=2.7e-19 Score=188.02 Aligned_cols=313 Identities=13% Similarity=-0.008 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKA-----TYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------H 327 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 327 (713)
.+++..+|..+...|++++|+.++++++...|... .++..+|.++...|++++|+..+++++.+.+.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 35678899999999999999999999999887553 267889999999999999999999999986543 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHH--HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC----
Q 005125 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK--AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS---- 401 (713)
Q Consensus 328 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---- 401 (713)
.++..+|.++...|++++|+.+|++++. +.+..... ......+..++.++...|++++|+..+++++...+..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQ-LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 4578899999999999999999999998 55321110 1223456778899999999999999999999987653
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 402 APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
...++..+|.++...|++++|+.++++++.+.+...... .........++.++...|++++|..++++++...+...
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS---DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcch---hHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 236788899999999999999999999976533210000 00011122455668899999999999999998776532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 482 EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY------NSVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 482 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
.... ..+..+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|...+++++.
T Consensus 250 ~~~~--------~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 250 HFLQ--------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GGGH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1110 01236899999999999999999999887542 235888999999999999999999999998
Q ss_pred hCCC--ChHHHH---HHHHHHHHHHHHhCCCCH
Q 005125 556 VMPS--YSKARL---EAAIQDYEMLIREIPGNE 583 (713)
Q Consensus 556 ~~p~--~~~a~~---~~A~~~~~~al~~~p~~~ 583 (713)
+.+. ....+. +.....+++.+...|-+.
T Consensus 322 ~~~~~g~~~~~~~~g~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 322 LANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp HHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCH
T ss_pred HhccccHHHHHHHccHHHHHHHHHHHhCCCCch
Confidence 8653 223333 566777888888888644
No 67
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.84 E-value=7.5e-20 Score=206.94 Aligned_cols=176 Identities=14% Similarity=0.001 Sum_probs=124.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAI--------AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC 325 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 325 (713)
++|.++.+++..| ...|++++|+..|++++ +.+|++..+++.+|.++..+|++++|+..|+++++++|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4566666666665 66777777777777777 777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQV 405 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 405 (713)
+..+|+.+|.+|..+|++++|+.+|+++++ ++|++. .+
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~~~-----------------------------------------~~ 503 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLD-TFPGEL-----------------------------------------AP 503 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSTTCS-----------------------------------------HH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCh-----------------------------------------HH
Confidence 777777777777777777777777777777 666652 56
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
+.++|.+|..+|++++ +.+|+++++++|+ ++.+++++|.+|..+|++++|+..|+++++++|++..++.
T Consensus 504 ~~~lg~~~~~~g~~~~-~~~~~~al~~~P~----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 572 (681)
T 2pzi_A 504 KLALAATAELAGNTDE-HKFYQTVWSTNDG----------VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARL 572 (681)
T ss_dssp HHHHHHHHHHHTCCCT-TCHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhCCc----------hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHH
Confidence 6666777777777766 6677776666664 3446666677777777777777777777777776666665
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.84 E-value=1.5e-19 Score=179.72 Aligned_cols=213 Identities=16% Similarity=0.119 Sum_probs=174.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---H
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---H 327 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 327 (713)
..|.+++.++.+|..++..|+|++|+..|+++++.+|.+ ..+++.+|.+|..+|++++|+..|++++++.|++ .
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 578889999999999999999999999999999999998 8999999999999999999999999999998854 6
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 328 RAHHRLAMLYFR--------LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 328 ~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
.+++.+|.++.. +|++++|+..|++++. ..|++..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~------------------------------------ 132 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID-RYPNHEL------------------------------------ 132 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH-HCTTCTT------------------------------------
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH-HCcCchh------------------------------------
Confidence 789999999999 9999999999999998 8887631
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
+...+..+....+ .....++.+|.+|...|++++|+..|+++++..|+
T Consensus 133 -----~~~a~~~~~~~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 133 -----VDDATQKIRELRA---------------------------KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp -----HHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----HHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 1111111100000 01224677899999999999999999999999998
Q ss_pred CH---HHHHHHHHHHHHHHHHHHHHHHHHc----------ccHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCH
Q 005125 480 NK---EVIKGVKMAKAMASARLRGNLLFKA----------SKYKEACYAYSEGLEHEAYNS---VLLCNRAACRSKLGQY 543 (713)
Q Consensus 480 ~~---~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~ 543 (713)
+. .++. .+|.++..+ |++++|+..|+++++..|+++ .+...++.++..++++
T Consensus 181 ~~~~~~a~~------------~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 181 TPWADDALV------------GAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp STTHHHHHH------------HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHH------------HHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 54 3444 688888877 999999999999999999884 5666778888887777
Q ss_pred HHHH
Q 005125 544 EKAV 547 (713)
Q Consensus 544 ~~A~ 547 (713)
+++.
T Consensus 249 ~~~~ 252 (261)
T 3qky_A 249 EGDA 252 (261)
T ss_dssp HTCT
T ss_pred hhhh
Confidence 6544
No 69
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.84 E-value=5.2e-21 Score=205.84 Aligned_cols=305 Identities=14% Similarity=0.002 Sum_probs=208.7
Q ss_pred hhhhhcCCC--CchhhhHhh-cCCCCHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--
Q 005125 236 MGNIVKQPS--GEFPQCISS-LNKLDPEELKFMGNEAYNKARF---EDALALYDRAIAINSSKATYRSNKSAALIGLG-- 307 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~-~~~~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-- 307 (713)
++..+.+.+ ++|...+++ ..+.++++++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-------------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCC
Confidence 344444444 456666666 5556777888888888888877 7888888888765 5677788888666655
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh
Q 005125 308 ---RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKA---VSHYKKSSSLANQKDIAKAEALHKHLTKCNEAREL 381 (713)
Q Consensus 308 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~ 381 (713)
++++|+.+|+++++. .++.+++.||.+|...+..+++ +..+.++.. . .+ ....+.++..+...
T Consensus 86 ~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-~--g~------~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA-A--GY------PEAGLAQVLLYRTQ 154 (452)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-H--TC------TTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-C--CC------HHHHHHHHHHHHcC
Confidence 778888888888774 3445788888888877654443 333443332 1 11 13566777777777
Q ss_pred hcHHHHHH----HHHHHHHcCCCChHHHHHHHHHHHHHcc---CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHH
Q 005125 382 KRWNDLLK----ETQNVISFGADSAPQVYALQAEALLRLQ---RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRA 454 (713)
Q Consensus 382 ~~~~~A~~----~~~~al~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg 454 (713)
+.+++++. .++.+...+| .+++.+|.+|...| ++++|+.+|+++....+. .+..++.+|
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~----~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~----------~a~~~~~Lg 220 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTD----ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV----------TAQRVDSVA 220 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCT----THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS----------CHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH----------HHHHHHHHH
Confidence 75544444 4444444444 48899999999999 999999999999987763 455678999
Q ss_pred HHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH-H--HHcccHHHHHHHHHHHhccCCCCH
Q 005125 455 QVYIAA----GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL-L--FKASKYKEACYAYSEGLEHEAYNS 527 (713)
Q Consensus 455 ~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~ 527 (713)
.+|... +++++|+.+|+++. |.++.++. ++|.+ + ...+++++|+.+|+++++. .++
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~------------~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~ 283 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA---PGYPASWV------------SLAQLLYDFPELGDVEQMMKYLDNGRAA--DQP 283 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHH------------HHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHH------------HHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 999776 79999999999998 88888887 68988 4 5689999999999999865 489
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCChHHHH----------------HHHHHHHHHHHHhCCCCHHHH
Q 005125 528 VLLCNRAACRSKLG-----QYEKAVEDCTAALIVMPSYSKARL----------------EAAIQDYEMLIREIPGNEEVG 586 (713)
Q Consensus 528 ~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~----------------~~A~~~~~~al~~~p~~~~~~ 586 (713)
.++++||.+|. .| ++++|+.+|+++. ++++.+.+ ++|+.+|+++.+. +++.+.
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~ 357 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSAD 357 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHH
Confidence 99999999998 66 9999999999999 88888876 7889999988764 556655
Q ss_pred HHHHH
Q 005125 587 RALFE 591 (713)
Q Consensus 587 ~~l~~ 591 (713)
..|..
T Consensus 358 ~~Lg~ 362 (452)
T 3e4b_A 358 FAIAQ 362 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=1.8e-19 Score=189.74 Aligned_cols=246 Identities=14% Similarity=0.060 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINS------SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC-------YH 327 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~ 327 (713)
.++.+|..++..|++++|+.+|++++++.+ ..+.+++.+|.+|..+|++++|+.++++++++.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 577899999999999999999999998743 24678999999999999999999999999987442 25
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 005125 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA 407 (713)
Q Consensus 328 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 407 (713)
.++..+|.+|..+|++++|+.+|++++. +.+... +. .....++.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~-~~~~~~--------------------~~---------------~~~~~~~~ 226 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALE-LAMDIQ--------------------ND---------------RFIAISLL 226 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTT--------------------CH---------------HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHcC--------------------CH---------------HHHHHHHH
Confidence 6788999999999999999999999998 433210 00 00136788
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK--EVIK 485 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~ 485 (713)
++|.+|...|++++|+.+|++++.+...... +..+.++..+|.+|...|++++|+.++++++++.+... ....
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVP-----DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-----hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999999999984332111 12366899999999999999999999999999865421 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 486 GVKMAKAMASARLRGNLLFKASK---YKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 486 ~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
.+..++.++...++ +.+|+..+++. ...|....++..+|.+|...|++++|+.+|++++++.
T Consensus 302 ---------~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 302 ---------LFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp ---------HHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11257888888888 89999998873 3445557788999999999999999999999998763
No 71
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.83 E-value=9.2e-19 Score=175.08 Aligned_cols=239 Identities=12% Similarity=-0.004 Sum_probs=203.8
Q ss_pred HHHHHHHHHhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--
Q 005125 263 KFMGNEAYNKARF-EDALALYDRAIAINSSKATYRSNKSAALIGLG--RQIEALVECKEAIRIDPCYHRAHHRLAMLY-- 337 (713)
Q Consensus 263 ~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~-- 337 (713)
+.........|.+ ++|+.++.++|.++|++..+|+.++.++..+| ++++++.++++++..+|.+..+|+..+.++
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 3333444555555 68999999999999999999999999999999 999999999999999999999999999999
Q ss_pred --HHc---CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 005125 338 --FRL---GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA 412 (713)
Q Consensus 338 --~~~---g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 412 (713)
... +++++++.++.+++. .+|.+. .+|..++.+
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~-~~pkny-----------------------------------------~aW~~R~~v 153 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLS-SDPKNH-----------------------------------------HVWSYRKWL 153 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHH
T ss_pred HHHhccccCCHHHHHHHHHHHHH-hCCCCH-----------------------------------------HHHHHHHHH
Confidence 767 788999999999998 888874 667777777
Q ss_pred HHHccCHH--HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHH
Q 005125 413 LLRLQRHQ--EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGR------FEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 413 ~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~ 484 (713)
+..+|.++ ++++++++++..+|. +..+|..++.++...++ ++++++++++++..+|.+..+|
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~~d~~----------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW 223 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVIDTDLK----------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW 223 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHhcccChHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH
Confidence 77777777 778888888777774 44477777888777776 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHH-HHHHHHHHhccC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKE-ACYAYSEGLEHE---AYNSVLLCNRAACRSKLGQYEKAVEDCTAALI-VMPS 559 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~ 559 (713)
. .++.++...|+..+ ...++.++++++ |.++.++..+|.+|.+.|+.++|+++|+.+.+ .||.
T Consensus 224 ~------------y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 224 N------------YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp H------------HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred H------------HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH
Confidence 8 58888888888555 556888888876 88999999999999999999999999999997 7998
Q ss_pred ChHHHH
Q 005125 560 YSKARL 565 (713)
Q Consensus 560 ~~~a~~ 565 (713)
....|.
T Consensus 292 r~~yW~ 297 (306)
T 3dra_A 292 RSNFWD 297 (306)
T ss_dssp GHHHHH
T ss_pred HHHHHH
Confidence 777664
No 72
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=1.1e-19 Score=183.88 Aligned_cols=233 Identities=12% Similarity=-0.023 Sum_probs=173.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 005125 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC------YHRAHHRLAMLYFRLGEAEKAV 347 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 347 (713)
++++|+.+|.++ |.+|...|++++|+.+|++++.+.+. .+.++.++|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888888887 56778888999999999988887432 2568888899998999999999
Q ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc-cCHHHHHHHh
Q 005125 348 SHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL-QRHQEAHDSY 426 (713)
Q Consensus 348 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-g~~~~A~~~~ 426 (713)
.+|++++. +.+.. |++..+ ..++..+|.+|... |++++|+.+|
T Consensus 98 ~~~~~Al~-l~~~~--------------------g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 98 DSLENAIQ-IFTHR--------------------GQFRRG---------------ANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHH-HHHHT--------------------TCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHH-HHHHc--------------------CCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 98888888 55443 333222 36788899999996 9999999999
Q ss_pred hccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005125 427 NKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA 506 (713)
Q Consensus 427 ~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 506 (713)
++++.+.|...... ....++..+|.+|..+|++++|+.+|++++++.|++...... ....+.++|.++..+
T Consensus 142 ~~Al~~~~~~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~lg~~~~~~ 212 (292)
T 1qqe_A 142 ELAGEWYAQDQSVA----LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS-----LKDYFLKKGLCQLAA 212 (292)
T ss_dssp HHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH-----HHHHHHHHHHHHHHc
Confidence 99999877532110 125678999999999999999999999999999887543100 011233799999999
Q ss_pred ccHHHHHHHHHHHhccCCCCHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 507 SKYKEACYAYSEGLEHEAYNSVL-----LCNRAACRS--KLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 507 g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|++++|+.+|+++++++|..... +..++..+. ..+++++|+..|++++.++|.....+.
T Consensus 213 g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 213 TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 99999999999999999976543 445566554 456788888888888887776544443
No 73
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.83 E-value=2.5e-19 Score=171.24 Aligned_cols=171 Identities=14% Similarity=0.108 Sum_probs=150.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSN----------------KSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 321 (713)
.++.++..|..++..|++++|+.+|+++++.+|+++.+++. +|.+|...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
++|+++.++..+|.+|...|++++|+.+|+++++ ++|++.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~--------------------------------------- 122 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ-LEADNL--------------------------------------- 122 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCH---------------------------------------
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCH---------------------------------------
Confidence 9999999999999999999999999999999999 888873
Q ss_pred hHHHHHHHHHHHHHccC--HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 402 APQVYALQAEALLRLQR--HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
.+++.+|.+|...|+ ...+...|++++...|. ..+++.+|.++...|++++|+.+|+++++++|+
T Consensus 123 --~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 123 --AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-----------QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-----------HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred --HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-----------hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 788888888876654 56678888888765543 235778899999999999999999999999997
Q ss_pred CH
Q 005125 480 NK 481 (713)
Q Consensus 480 ~~ 481 (713)
..
T Consensus 190 ~~ 191 (208)
T 3urz_A 190 TE 191 (208)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=9.5e-20 Score=184.24 Aligned_cols=232 Identities=12% Similarity=0.059 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSS------KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
.+...|.+|...|++++|+.+|.+++++.+. .+.++.++|.+|..+|++++|+.+|++++.+.+
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~---------- 108 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT---------- 108 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------
Confidence 4556688999999999999999999998532 257899999999999999999999999998643
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCC-----hHHHHHH
Q 005125 335 MLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAREL-KRWNDLLKETQNVISFGADS-----APQVYAL 408 (713)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~-----~~~~~~~ 408 (713)
..|++..+... +..++.++... |++++|+..|++++.+.|.. ...++..
T Consensus 109 ----~~g~~~~~a~~---------------------~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 109 ----HRGQFRRGANF---------------------KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp ----HTTCHHHHHHH---------------------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----HcCCHHHHHHH---------------------HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 34555443322 34556677775 99999999999999987753 1367889
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 488 (713)
+|.+|..+|++++|+.+|++++.+.|+.....+ ....++..+|.++..+|++++|+.+|++++.++|........
T Consensus 164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-- 238 (292)
T 1qqe_A 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQW---SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES-- 238 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG---GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H--
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH--
Confidence 999999999999999999999998876432111 123478899999999999999999999999999987764421
Q ss_pred HHHHHHHHHHHHHHHH--HcccHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005125 489 MAKAMASARLRGNLLF--KASKYKEACYAYSEGLEHEAYNSVLLCNRAACR 537 (713)
Q Consensus 489 ~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 537 (713)
..+..++..+. ..+++++|+..|++++.++|....++..+-..+
T Consensus 239 -----~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 239 -----NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp -----HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 11224555554 567899999999999999997766666555444
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.82 E-value=2.8e-19 Score=188.56 Aligned_cols=303 Identities=11% Similarity=-0.050 Sum_probs=221.2
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CCHHHH--HHH--HHHHHHcCCHHHHH-----------HHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINS---SKATYR--SNK--SAALIGLGRQIEAL-----------VECKEA 319 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~a 319 (713)
.....+.-...+...+++++|..+++++.+.-+ .+...+ +.+ .......+++..+. ..++++
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 344566667778889999999999999866432 244333 222 22223334444444 555553
Q ss_pred HHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 005125 320 IRIDPCYHR------AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQN 393 (713)
Q Consensus 320 l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 393 (713)
- ..|.... .++.+|.++...|++++|+.+|++++. +.............+..++..+...|++++|+..+++
T Consensus 91 ~-~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 91 D-KKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES-KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp H-HHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-hcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 2333322 345599999999999999999999998 6333222334557788999999999999999999999
Q ss_pred HHHcCCCC------hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHH
Q 005125 394 VISFGADS------APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAV 467 (713)
Q Consensus 394 al~~~p~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 467 (713)
++.+.+.. ...++..+|.+|..+|++++|+.+|++++.+.+..... ...+.++.++|.+|..+|++++|+
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP----QLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99875433 23688899999999999999999999999886654221 124568999999999999999999
Q ss_pred HHHHHHHHh-----C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-----CCCHHHHHHHHHH
Q 005125 468 KTAQDAAQI-----D-PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE-----AYNSVLLCNRAAC 536 (713)
Q Consensus 468 ~~~~~al~~-----~-p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~ 536 (713)
.+|++++++ + |....++. ++|.++..+|++++|+.+|++++++. |.....+..+|.+
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYF------------LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSL 312 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999994 4 44444444 79999999999999999999999884 3334446789999
Q ss_pred HHHcCC---HHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhC
Q 005125 537 RSKLGQ---YEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREI 579 (713)
Q Consensus 537 ~~~~g~---~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~ 579 (713)
+...|+ +++|+..++++ ...|....++. ++|+.+|++++++.
T Consensus 313 ~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 313 YLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999 88888888776 22222222222 67777777776653
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=6.4e-19 Score=175.07 Aligned_cols=194 Identities=17% Similarity=0.116 Sum_probs=143.1
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
..+|.++..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.+|..+|++++|+..|++++. ..|++.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~p~~~- 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ-IYQIDP- 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCT-
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HCCCCc-
Confidence 4566667777777777777777777777777777777776 67777777777777777777777777777 655431
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcc
Q 005125 364 KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL 443 (713)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 443 (713)
T Consensus 87 -------------------------------------------------------------------------------- 86 (261)
T 3qky_A 87 -------------------------------------------------------------------------------- 86 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHcccHH
Q 005125 444 AGGAYLLIVRAQVYIA--------AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK-----AMASARLRGNLLFKASKYK 510 (713)
Q Consensus 444 ~~~~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~~~ 510 (713)
..+.+++.+|.++.. .|++++|+..|++++...|++..+......+. ....++.+|.++...|+++
T Consensus 87 -~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 165 (261)
T 3qky_A 87 -RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE 165 (261)
T ss_dssp -THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 112345555566655 88899999999999999998876654322211 1223457999999999999
Q ss_pred HHHHHHHHHhccCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChHH
Q 005125 511 EACYAYSEGLEHEAY---NSVLLCNRAACRSKL----------GQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 511 ~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a 563 (713)
+|+..|+++++..|+ .+.+++.+|.+|..+ |++++|+..|+++++.+|+++.+
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 999999999999998 467999999999987 78888888888888888877543
No 77
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=1.3e-17 Score=190.02 Aligned_cols=321 Identities=14% Similarity=0.047 Sum_probs=179.0
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC-CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS-GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRA 285 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~-~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 285 (713)
.+|++.|++++ ++|++......+ -.++.....+.. .....+..+++..+ .-.+|..+...|.|++|..+|+++
T Consensus 1002 ~EaieLLEKiv-l~~s~fs~n~~L--qnlLi~tAIkaD~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 1002 NELIELLEKIV-LDNSVFSEHRNL--QNLLILTAIKADRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred HHHHHHHHHHH-cCCCcccccHHH--HHHHHHHHHHhChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 49999999999 555421111111 111222211111 22233333322222 233677777777777777777665
Q ss_pred HHh----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005125 286 IAI----------------------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEA 343 (713)
Q Consensus 286 l~~----------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 343 (713)
-.. ..+.+.+|+.+|.++...|++++|+..|.++ +++..|..+|.++.+.|++
T Consensus 1076 ~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1076 DVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNW 1150 (1630)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCH
Confidence 200 1233455555556655566666666555553 4455555556666666666
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHH
Q 005125 344 EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAH 423 (713)
Q Consensus 344 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 423 (713)
++|+++|..+.+ ..++.. .....+..+.+++++++ ++.|. ..+ +. ..+..+|..+...|+|++|+
T Consensus 1151 EEAIeyL~mArk-~~~e~~-------Idt~LafaYAKl~rlee-le~fI----~~~-n~-ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1151 EELVKYLQMARK-KARESY-------VETELIFALAKTNRLAE-LEEFI----NGP-NN-AHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHHHHHHh-hccccc-------ccHHHHHHHHhhcCHHH-HHHHH----hCC-CH-HHHHHHHHHHHhcCCHHHHH
Confidence 666655555555 333211 01124444444444442 22221 111 22 23344666666666666666
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
.+|.++- .|..+|.+|.++|++++|++++++| .+..+|. +.+.++
T Consensus 1216 ~~Y~kA~------------------ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWk------------ev~~ac 1260 (1630)
T 1xi4_A 1216 LLYNNVS------------------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWK------------EVCFAC 1260 (1630)
T ss_pred HHHHhhh------------------HHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHH------------HHHHHH
Confidence 6666541 3455666666666666666666665 3334454 456666
Q ss_pred HHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH--------------HHHH
Q 005125 504 FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL--------------EAAI 569 (713)
Q Consensus 504 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--------------~~A~ 569 (713)
...|+|..|..+... +.. +++.+..++..|...|.+++|+.++++++.++|.+...+. .+++
T Consensus 1261 ve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 666666666665553 322 4456668888999999999999999999999988776663 6778
Q ss_pred HHHHHHHHhCC-----CCHHHHHHHHHH
Q 005125 570 QDYEMLIREIP-----GNEEVGRALFEA 592 (713)
Q Consensus 570 ~~~~~al~~~p-----~~~~~~~~l~~~ 592 (713)
+.|...+.+.| ++...+..+.-.
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHH
Confidence 88888777766 555555544333
No 78
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=9.3e-19 Score=175.45 Aligned_cols=240 Identities=16% Similarity=0.067 Sum_probs=176.6
Q ss_pred HHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 005125 270 YNKARFEDALALYDRAIAI--------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--------DPCYHRAHHRL 333 (713)
Q Consensus 270 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 333 (713)
...|++++|+.+|+++++. .|..+.++..+|.++...|++++|+.+|++++.+ +|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467888888888888874 2556789999999999999999999999999988 36668899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
|.+|...|++++|+.+|++++. +.... ...+......++..+|.+|
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~-~~~~~---------------------------------~~~~~~~~~~~~~~la~~~ 137 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALE-IREKV---------------------------------LGKFHPDVAKQLNNLALLC 137 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH-HHHHH---------------------------------HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH-HHHHH---------------------------------cCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999998 42110 0000001137788899999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI---------DPNNKEVI 484 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~ 484 (713)
...|++++|+.+|++++.+....... .......++..+|.+|...|++++|+.+|++++++ .+.....+
T Consensus 138 ~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 215 (283)
T 3edt_B 138 QNQGKAEEVEYYYRRALEIYATRLGP--DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW 215 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 99999999999999998872111000 00124568999999999999999999999999987 33444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 485 KGVKMAKAMASARLRGNLLFK------ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
. .++..+.. ...+.++...++......|..+.++..+|.+|..+|++++|+.+|++++++.
T Consensus 216 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 216 M------------HAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp H------------HHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred H------------HHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4 24444443 3346666667776666677788999999999999999999999999999763
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.79 E-value=4.8e-17 Score=170.68 Aligned_cols=254 Identities=15% Similarity=0.046 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHH
Q 005125 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH-----RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEA 367 (713)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~ 367 (713)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++. +.+........
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~ 92 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ-MARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHhcCcHHHH
Confidence 35677889999999999999999999999887552 3688999999999999999999999999 77665444455
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-------CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 368 LHKHLTKCNEARELKRWNDLLKETQNVISFGA-------DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
...+..++..+...|++++|+..+++++...+ .....++..+|.++...|++++|+.++++++...+.....
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~- 171 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ- 171 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH-
Confidence 66678899999999999999999999998742 1234677889999999999999999999999877653221
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN--NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
....++..+|.++...|++++|..++++++.+.+. ....+.. .....++.++...|++++|...+++
T Consensus 172 ----~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 172 ----QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS-------NANKVRVIYWQMTGDKAAAANWLRH 240 (373)
T ss_dssp ----GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH-------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH-------HHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 23467889999999999999999999999987433 2222211 0011355668899999999999999
Q ss_pred HhccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 519 GLEHEAYN----SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 519 al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
++...+.. ...+..+|.++...|++++|+..+++++...+.
T Consensus 241 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 99887653 346789999999999999999999999887543
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.78 E-value=6.5e-18 Score=161.35 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
.+...+|.+|...|++++|+.+|+++++++|+ ++.+++.+|.+|...|++++|+.+|+++++++|+++.+
T Consensus 55 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a 124 (208)
T 3urz_A 55 KLATELALAYKKNRNYDKAYLFYKELLQKAPN----------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 45566899999999999999999999999995 56689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASK--YKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
+. ++|.+++..|+ ...+...|++++...| ...+++++|.++..+|++++|+.+|+++++++|+..
T Consensus 125 ~~------------~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 125 NI------------FLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HH------------HHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 88 69999877764 5667888888775444 234688899999999999999999999999999854
No 81
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.4e-16 Score=181.48 Aligned_cols=292 Identities=13% Similarity=0.070 Sum_probs=226.9
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYD 283 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 283 (713)
.++|..+|+|+-..+ . .+...+...+ +.|.++.++. +.+.+|+.+|.++...|++++|+..|.
T Consensus 1065 yEEAf~IYkKa~~~~------~-------A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDVNT------S-------AVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHHHHHHcCCHH------H-------HHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 369999999974222 1 0112222222 5677777654 568999999999999999999999998
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 284 RAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 284 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
++ +++..|..+|.++.+.|+|++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.|.. .++.
T Consensus 1130 KA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI~-----~~n~-- 1195 (1630)
T 1xi4_A 1130 KA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFIN-----GPNN-- 1195 (1630)
T ss_pred hc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHHh-----CCCH--
Confidence 86 78899999999999999999999999999998854 2334459999999999885 555532 2221
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhh--HHh--
Q 005125 364 KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEY--YTK-- 439 (713)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~-- 439 (713)
..+...|..+...|+|++|+..|.++ ..|..+|.+|.++|++++|++++++|.....=. ...
T Consensus 1196 -----ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1196 -----AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 1261 (1630)
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34567889999999999999999986 578888999999999999999999985543200 000
Q ss_pred -----------hhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHc
Q 005125 440 -----------LFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL--FKA 506 (713)
Q Consensus 440 -----------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~--~~~ 506 (713)
......+++.+..++..|...|.|++|+.++++++.+++.+...+. .+|.++ ++-
T Consensus 1262 e~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft------------ELaiLyaKy~p 1329 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT------------ELAILYSKFKP 1329 (1630)
T ss_pred hhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH------------HHHHHHHhCCH
Confidence 0111235666778899999999999999999999999999888886 456555 457
Q ss_pred ccHHHHHHHHHHHhccCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 507 SKYKEACYAYSEGLEHEA-----YNSVLLCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 507 g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
++..++++.|...+.+.| +++..|..+..+|.+-|+++.|+...-.
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 789999999999999887 7889999999999999999999954433
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.78 E-value=2.2e-18 Score=195.01 Aligned_cols=199 Identities=11% Similarity=-0.071 Sum_probs=174.8
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 005125 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAI--------RIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN 358 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 358 (713)
..+|+++.+++..+ ...|++++|+..|++++ +.+|++..+++.+|.+|..+|++++|+..|+++++ .+
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~ 463 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE-RV 463 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc-cC
Confidence 45788888887777 78899999999999999 89999999999999999999999999999999999 88
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHH
Q 005125 359 QKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYT 438 (713)
Q Consensus 359 p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 438 (713)
|++. .+|+.+|.+|...|++++|+..|+++++++|+
T Consensus 464 p~~~-----------------------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--- 499 (681)
T 2pzi_A 464 GWRW-----------------------------------------RLVWYRAVAELLTGDYDSATKHFTEVLDTFPG--- 499 (681)
T ss_dssp CCCH-----------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---
T ss_pred cchH-----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence 8873 78999999999999999999999999999995
Q ss_pred hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 439 KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 439 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
++.+++++|.+|..+|++++ +.+|+++++++|++..++. ++|.++..+|++++|+..|++
T Consensus 500 -------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~------------~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 500 -------ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF------------GLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp -------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHT
T ss_pred -------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH------------HHHHHHHHcCCHHHHHHHHHh
Confidence 45689999999999999999 9999999999999999887 799999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 005125 519 GLEHEAYNSVLLCNRAACRSKLGQYEKA-VEDCTAA 553 (713)
Q Consensus 519 al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~a 553 (713)
+++++|++..+++++|.++...|+.+++ ...+++|
T Consensus 560 al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A 595 (681)
T 2pzi_A 560 VPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDA 595 (681)
T ss_dssp SCTTSTTHHHHHHHHHHHTC-------CCHHHHHHH
T ss_pred hcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHH
Confidence 9999999999999999999887774444 3344433
No 83
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=6e-19 Score=179.74 Aligned_cols=245 Identities=17% Similarity=0.086 Sum_probs=178.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--------DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
+|....++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++. +...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA-IREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHH
Confidence 4566789999999999999999999999999995 566788999999999999999999999999988 4211
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 361 DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
. ...++.....++..+|.+|...|++++|+.+|++++.+......
T Consensus 102 ~---------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-- 146 (311)
T 3nf1_A 102 T---------------------------------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-- 146 (311)
T ss_dssp H---------------------------------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred H---------------------------------hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC--
Confidence 0 00000111367888999999999999999999999876422100
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI--------DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 512 (713)
........++..+|.++...|++++|+.+|++++.+ .|....++. .+|.++...|++++|
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~la~~~~~~g~~~~A 214 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN------------NLASCYLKQGKFKQA 214 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH------------HHHHHHHHHTCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH------------HHHHHHHHcCCHHHH
Confidence 000124668999999999999999999999999987 333333333 799999999999999
Q ss_pred HHHHHHHhccCCC---------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------
Q 005125 513 CYAYSEGLEHEAY---------N------SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------ 565 (713)
Q Consensus 513 ~~~~~~al~~~p~---------~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------ 565 (713)
+.+|+++++..+. . ...+..++..+...+.+.+|+..+++++...|....++.
T Consensus 215 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 294 (311)
T 3nf1_A 215 ETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKF 294 (311)
T ss_dssp HHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCH
Confidence 9999999976432 2 334555556667777888888899999988888777666
Q ss_pred HHHHHHHHHHHHhCCC
Q 005125 566 EAAIQDYEMLIREIPG 581 (713)
Q Consensus 566 ~~A~~~~~~al~~~p~ 581 (713)
++|+..|++++++.|+
T Consensus 295 ~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 295 EAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8899999999988775
No 84
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.78 E-value=1.8e-17 Score=165.66 Aligned_cols=215 Identities=10% Similarity=0.013 Sum_probs=165.2
Q ss_pred CCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCC
Q 005125 256 KLDPEELKFMGNEAYNKA--RFEDALALYDRAIAINSSKATYRSNKSAAL----IGL---GRQIEALVECKEAIRIDPCY 326 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~~A~~~~~~al~~~p~~ 326 (713)
|++..+|+.++.++...| ++++++.++.+++..+|++..+|+.++.++ ... +++++++.++.++++.+|.+
T Consensus 64 P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn 143 (306)
T 3dra_A 64 ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN 143 (306)
T ss_dssp TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC
Confidence 445567999999999999 999999999999999999999999999999 777 89999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc------HHHHHHHHHHHHHcC
Q 005125 327 HRAHHRLAMLYFRLGEAE--KAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR------WNDLLKETQNVISFG 398 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~~~ 398 (713)
..+|...+.++...|.++ ++++++.++++ .+|.+. .++..++.+....+. ++++++.+++++..+
T Consensus 144 y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~-~d~~N~------sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~ 216 (306)
T 3dra_A 144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVID-TDLKNN------SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC 216 (306)
T ss_dssp HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HCTTCH------HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHHH-hCCCCH------HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC
Confidence 999999999999999998 99999999999 999984 455555555555555 677777777777777
Q ss_pred CCChHHHHHHHHHHHHHccCHHH-HHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h
Q 005125 399 ADSAPQVYALQAEALLRLQRHQE-AHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ-I 476 (713)
Q Consensus 399 p~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~ 476 (713)
|.+. .+|+.++.++...|+..+ ...++.+++.+... ....+.++..++.+|.+.|+.++|+++|+.+.+ .
T Consensus 217 p~n~-SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 217 PQNP-STWNYLLGIHERFDRSITQLEEFSLQFVDLEKD-------QVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp SSCH-HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT-------EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCCc-cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC-------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 7764 777777777777776444 33455555543310 013566666666666666666666666666665 5
Q ss_pred CCCCHHHHH
Q 005125 477 DPNNKEVIK 485 (713)
Q Consensus 477 ~p~~~~~~~ 485 (713)
+|-....|.
T Consensus 289 Dpir~~yW~ 297 (306)
T 3dra_A 289 NPIRSNFWD 297 (306)
T ss_dssp CGGGHHHHH
T ss_pred ChHHHHHHH
Confidence 666666655
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.77 E-value=1.1e-17 Score=155.90 Aligned_cols=172 Identities=18% Similarity=0.157 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
...++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
..|++++|+.+|++++. ..|.+. .++..+|.++...|+
T Consensus 88 ~~~~~~~A~~~~~~~~~-~~~~~~-----------------------------------------~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE-ANPINF-----------------------------------------NVRFRLGVALDNLGR 125 (186)
T ss_dssp HHTCHHHHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHh-cCcHhH-----------------------------------------HHHHHHHHHHHHcCc
Confidence 99999999999999999 777663 667777888888888
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE 482 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 482 (713)
+++|+.++++++...|+ ...++..+|.++...|++++|+.+++++++.+|++..
T Consensus 126 ~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 126 FDEAIDSFKIALGLRPN----------EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHHHHhcCcc----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 88888888888877764 4557888899999999999999999999888877654
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=5e-17 Score=157.34 Aligned_cols=207 Identities=8% Similarity=-0.067 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA---TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR---AHH 331 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 331 (713)
+++.++.+|..++..|+|++|+..|+++++..|.+. .+++.+|.+|...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 456677777777777777777777777777777653 56777777777777777777777777777776643 666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE 411 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~ 411 (713)
.+|.++...+.. .+ ..+..++.
T Consensus 83 ~~g~~~~~~~~~---------~~-------------------------------------------------~~~~~~~~ 104 (225)
T 2yhc_A 83 MRGLTNMALDDS---------AL-------------------------------------------------QGFFGVDR 104 (225)
T ss_dssp HHHHHHHHHHC---------------------------------------------------------------------
T ss_pred HHHHHHHhhhhh---------hh-------------------------------------------------hhhhccch
Confidence 777666654421 00 11222344
Q ss_pred HHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 491 (713)
.+...|++++|+..|+++++..|+.... ..++..++.+....
T Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~P~~~~a-------~~a~~~l~~~~~~~------------------------------- 146 (225)
T 2yhc_A 105 SDRDPQQARAAFSDFSKLVRGYPNSQYT-------TDATKRLVFLKDRL------------------------------- 146 (225)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCTTCTTH-------HHHHHHHHHHHHHH-------------------------------
T ss_pred hhcCcHHHHHHHHHHHHHHHHCcCChhH-------HHHHHHHHHHHHHH-------------------------------
Confidence 5555666777777777777766653221 11111111111000
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS---VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 492 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
......+|.+++..|++++|+..|+++++..|+++ .+++.+|.+|.++|++++|+..++++....|++.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 01112689999999999999999999999999885 6799999999999999999999999999888764
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.76 E-value=2.3e-17 Score=153.71 Aligned_cols=137 Identities=16% Similarity=0.106 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
.++..+|.++...|++++|+.++++++...|+ ...++..+|.++...|++++|+.+|++++...|.+...
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 112 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPD----------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHH
Confidence 44445555555555555555555555554442 34466777888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
+. .+|.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+.+++++++++|++..
T Consensus 113 ~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 113 RF------------RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HH------------HHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 76 58888888888888888888888888888888888888888888888888888888888777643
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.76 E-value=5.3e-17 Score=157.16 Aligned_cols=199 Identities=13% Similarity=-0.026 Sum_probs=144.4
Q ss_pred chhhhhcCCC--CchhhhHhh---cCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH
Q 005125 235 VMGNIVKQPS--GEFPQCISS---LNKLD---PEELKFMGNEAYNKARFEDALALYDRAIAINSSKAT---YRSNKSAAL 303 (713)
Q Consensus 235 ~lg~~~~~~~--~~a~~~~~~---~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~ 303 (713)
.+|..+...| ++|+..++. ..|.+ +.+++.+|.+++..|++++|+..|+++++.+|++.. +++.+|.++
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 4677777777 668888887 45655 479999999999999999999999999999999864 889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc
Q 005125 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR 383 (713)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 383 (713)
...+.. ....+..++..+...|++++|+..|++++. ..|++........ ......
T Consensus 89 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~P~~~~a~~a~~---~l~~~~----- 143 (225)
T 2yhc_A 89 MALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVR-GYPNSQYTTDATK---RLVFLK----- 143 (225)
T ss_dssp HHHHC------------------------------CCHHHHHHHHHHHHHHT-TCTTCTTHHHHHH---HHHHHH-----
T ss_pred Hhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHH-HCcCChhHHHHHH---HHHHHH-----
Confidence 876532 123355667777788888899999999888 8888753221110 000000
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCH
Q 005125 384 WNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRF 463 (713)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 463 (713)
.. .......+|.+|...|++++|+..|+++++..|+... ...+++.+|.+|..+|++
T Consensus 144 --~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 144 --DR--------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA-------TRDALPLMENAYRQMQMN 200 (225)
T ss_dssp --HH--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH-------HHHHHHHHHHHHHHTTCH
T ss_pred --HH--------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc-------cHHHHHHHHHHHHHcCCc
Confidence 00 0134456799999999999999999999998886432 346899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 005125 464 EDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~ 481 (713)
++|+..++++....|++.
T Consensus 201 ~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 201 AQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHhhCCCch
Confidence 999999999998888764
No 89
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.76 E-value=1.7e-16 Score=159.40 Aligned_cols=248 Identities=15% Similarity=0.072 Sum_probs=173.0
Q ss_pred HHHhcCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 269 AYNKARFE-DALALYDRAIAINSSKATYRSNKSAALIGLGR----------QIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 269 ~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
....|++. +|+.++.+++.++|++..+|+.++.++..++. +++++.++..++..+|.+..+|...+.++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34567765 78999999999999999999999999988776 68999999999999999999999999999
Q ss_pred HHcCC--HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 005125 338 FRLGE--AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR-WNDLLKETQNVISFGADSAPQVYALQAEALL 414 (713)
Q Consensus 338 ~~~g~--~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 414 (713)
..+++ +++++.++.++++ .+|.+. .++..++.+....+. ++++++.+.+++..+|.+. .+|..++.++.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~-~dprNy------~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~-SAW~~R~~ll~ 190 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLE-ADERNF------HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-SSWHYRSCLLP 190 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHH-HCTTCH------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH-HHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHH-hCCCCH------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHH
Confidence 99984 8999999999999 898884 444444444444454 3555555555555555554 45555555444
Q ss_pred HccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005125 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMA 494 (713)
Q Consensus 415 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 494 (713)
.+.....+ +. . +. ...+.++++++++.+++..+|++..+|+++
T Consensus 191 ~l~~~~~~-----------~~--~---------------~~--~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~------- 233 (331)
T 3dss_A 191 QLHPQPDS-----------GP--Q---------------GR--LPENVLLKELELVQNAFFTDPNDQSAWFYH------- 233 (331)
T ss_dssp HHSCCC----------------------------------C--CCHHHHHHHHHHHHHHHHHSTTCHHHHHHH-------
T ss_pred Hhhhcccc-----------cc--c---------------cc--cchHHHHHHHHHHHHHHHhCCCCHHHHHHH-------
Confidence 43221000 00 0 00 001458999999999999999999999852
Q ss_pred HHHHHHHHHHH----------cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCh
Q 005125 495 SARLRGNLLFK----------ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRS---KLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 495 ~~~~lg~~~~~----------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
.+.+... .+.++++++++.+++++.|++...+..++.+.. ..|..++...++.+.+++||-..
T Consensus 234 ----r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 234 ----RWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp ----HHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred ----HHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 2222222 256899999999999999999665555544332 24556666666666666666554
Q ss_pred HHHH
Q 005125 562 KARL 565 (713)
Q Consensus 562 ~a~~ 565 (713)
.-|.
T Consensus 310 ~~y~ 313 (331)
T 3dss_A 310 AYLD 313 (331)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4443
No 90
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2.9e-18 Score=176.37 Aligned_cols=280 Identities=12% Similarity=0.060 Sum_probs=152.3
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDR 284 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 284 (713)
++|++++++. +.+ ..|. .+|..+.+.+ ++|+..+.+ ..++..+...+..+...|+|++|+.+++.
T Consensus 20 d~A~~fae~~----~~~---~vWs----~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 20 DRAYEFAERC----NEP---AVWS----QLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC----CCh---HHHH----HHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4899999988 211 2333 5889998888 778888865 45777999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHH
Q 005125 285 AIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 285 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
+.+..++ +.+...++.+|.++|++.++.++++. |+ ..+|..+|..+...|+|++|..+|.++-
T Consensus 87 ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---------- 149 (449)
T 1b89_A 87 ARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNVS---------- 149 (449)
T ss_dssp -----------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHTT----------
T ss_pred HHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHhh----------
Confidence 9886444 77788999999999999999988853 43 4699999999999999999999999763
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
.+..++..+..+|+|++|++.++++ . .+..|...+.++...|+++.|..+... +...|+.
T Consensus 150 -----n~~~LA~~L~~Lg~yq~AVea~~KA-----~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~-------- 209 (449)
T 1b89_A 150 -----NFGRLASTLVHLGEYQAAVDGARKA-----N-STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE-------- 209 (449)
T ss_dssp -----CHHHHHHHHHTTTCHHHHHHHHHHH-----T-CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH--------
T ss_pred -----hHHHHHHHHHHhccHHHHHHHHHHc-----C-CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh--------
Confidence 3678899999999999999999999 2 258899999999999999999888886 4466654
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHhcc
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL--FKASKYKEACYAYSEGLEH 522 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~--~~~g~~~~A~~~~~~al~~ 522 (713)
+..+..+|.+.|++++|+.++++++.+++.+...+. .+|.++ ++.++..++++.|...+.+
T Consensus 210 -----l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ft------------el~il~~ky~p~k~~ehl~~~~~~ini 272 (449)
T 1b89_A 210 -----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFT------------ELAILYSKFKPQKMREHLELFWSRVNI 272 (449)
T ss_dssp -----HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH------------HHHHHHHTTCHHHHHHHHHHHSTTSCH
T ss_pred -----HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHH------------HHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 334788899999999999999999999999999888 456555 5678999999999999999
Q ss_pred CC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 523 EA-----YNSVLLCNRAACRSKLGQYEKAVEDCTAA 553 (713)
Q Consensus 523 ~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 553 (713)
.| +++..|..+..+|.+-++++.|+...-..
T Consensus 273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 88 88999999999999999999999865543
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.75 E-value=1.3e-18 Score=156.44 Aligned_cols=98 Identities=19% Similarity=0.096 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005125 264 FMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEA 343 (713)
Q Consensus 264 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 343 (713)
.+|.++...|++++|+..|++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.+|..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36778888899999999999999988888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccccH
Q 005125 344 EKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 344 ~~A~~~~~~al~~~~p~~~ 362 (713)
++|+.+|+++++ ++|++.
T Consensus 82 ~~A~~~~~~al~-~~p~~~ 99 (150)
T 4ga2_A 82 DKAVECYRRSVE-LNPTQK 99 (150)
T ss_dssp HHHHHHHHHHHH-HCTTCH
T ss_pred HHHHHHHHHHHH-hCCCCH
Confidence 999999999999 888874
No 92
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.75 E-value=6.7e-17 Score=169.94 Aligned_cols=294 Identities=14% Similarity=0.008 Sum_probs=209.9
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH----HcCCHHHHH---------HHHHHHHHhCCC-----
Q 005125 267 NEAYNKARFEDALALYDRAIAINS---SKATYRSNKSAALI----GLGRQIEAL---------VECKEAIRIDPC----- 325 (713)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~----~~g~~~~A~---------~~~~~al~~~p~----- 325 (713)
..+...+++++|..+++++....+ .+...+...+.... ..+.+..+. ..++++-.....
T Consensus 20 y~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l 99 (378)
T 3q15_A 20 YKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLL 99 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHH
Confidence 334789999999999998765422 23443322222211 112222222 344433221110
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC-----
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD----- 400 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----- 400 (713)
....++.+|..+...|++++|+.+|++++. +.+...........+..++..+...|+++.|+..+++++.+.+.
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEK-ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 123677899999999999999999999998 65433333455677889999999999999999999999987543
Q ss_pred -ChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 005125 401 -SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ---- 475 (713)
Q Consensus 401 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---- 475 (713)
....++..+|.+|...|++++|+.+|++++.+.+...... ..+.++.++|.+|..+|++++|+.+|++++.
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR----FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 1246788999999999999999999999998755322111 2466899999999999999999999999999
Q ss_pred -hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-----CCCHHHHHHHHHHHHHcCC---HHHH
Q 005125 476 -IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE-----AYNSVLLCNRAACRSKLGQ---YEKA 546 (713)
Q Consensus 476 -~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A 546 (713)
.+|....++. ++|.++...|++++|+.+|++++++. +.....+..++.++...|+ +.+|
T Consensus 255 ~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~a 322 (378)
T 3q15_A 255 KVPDLLPKVLF------------GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322 (378)
T ss_dssp HCGGGHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred hCChhHHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 5555544444 79999999999999999999999884 3345567788899999999 8888
Q ss_pred HHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHh
Q 005125 547 VEDCTAALIVMPSYSKARL------------EAAIQDYEMLIRE 578 (713)
Q Consensus 547 ~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~ 578 (713)
+..+++. ...|.....+. ++|+.+|+++++.
T Consensus 323 l~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 323 LSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8888762 11111111211 7777777777654
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.75 E-value=4.2e-18 Score=153.19 Aligned_cols=136 Identities=13% Similarity=0.013 Sum_probs=121.1
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGV 487 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 487 (713)
.||.++...|++++|+..+++++...|+. +..++.+|.+|...|++++|+.+|+++++++|+++.+|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~-- 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK----------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHR-- 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH----------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--
Confidence 36888899999999999999999998864 346788999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHHHH
Q 005125 488 KMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED-CTAALIVMPSYSKARL 565 (713)
Q Consensus 488 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~ 565 (713)
.+|.++...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|... ++++++++|+++.++.
T Consensus 70 ----------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 70 ----------FLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp ----------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred ----------HHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 6999999999999999999999999999999999999999999999887765 5899999998877654
No 94
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.75 E-value=1.2e-17 Score=170.05 Aligned_cols=223 Identities=17% Similarity=0.125 Sum_probs=171.7
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 271 NKARFEDALALYDRAIAINSSKATYRSNKSAALIG-LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSH 349 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 349 (713)
..|++++|..+++++.+..+.. ++. .+++++|+.+|.++ |.+|...|++++|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4688999999999999876642 112 58999999999886 5688899999999999
Q ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhcc
Q 005125 350 YKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS 429 (713)
Q Consensus 350 ~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 429 (713)
|.+++. +.+.. ++...+ ..++..+|.+|..+|++++|+.+|+++
T Consensus 59 ~~~al~-~~~~~--------------------~~~~~~---------------a~~~~~lg~~~~~~g~~~~A~~~~~~A 102 (307)
T 2ifu_A 59 YLQEAE-AHANN--------------------RSLFHA---------------AKAFEQAGMMLKDLQRMPEAVQYIEKA 102 (307)
T ss_dssp HHHHHH-HHHHT--------------------TCHHHH---------------HHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred HHHHHH-HHHHc--------------------CCHHHH---------------HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999998 54432 222111 257777889999999999999999998
Q ss_pred ccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Q 005125 430 PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKY 509 (713)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 509 (713)
+.+.+..... ...+.++.++|.+|.. |++++|+.+|++++.+.+....... ...++.++|.++..+|+|
T Consensus 103 l~l~~~~g~~----~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~------~~~~~~~lg~~~~~~g~~ 171 (307)
T 2ifu_A 103 SVMYVENGTP----DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ------AAELIGKASRLLVRQQKF 171 (307)
T ss_dssp HHHHHTTTCH----HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCH----HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH------HHHHHHHHHHHHHHcCCH
Confidence 8775432110 0235688899999988 9999999999999988765321111 123445899999999999
Q ss_pred HHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 510 KEACYAYSEGLEHEAYN------SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 510 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
++|+.+|++++.+.|.+ ..++.++|.++..+|++++|+.+|++++ ++|.+.....
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHH
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHH
Confidence 99999999999886643 3478889999999999999999999999 9998765443
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.75 E-value=2.1e-17 Score=143.51 Aligned_cols=108 Identities=26% Similarity=0.339 Sum_probs=105.6
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
++|+.++++..+|..++..|+|++|+.+|+++++++|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+|++++|+.+|+++++ ++|++.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~-l~P~~~ 115 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ-VDPSNE 115 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-HCcCCH
Confidence 9999999999999999999999 999985
No 96
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=6.1e-17 Score=144.81 Aligned_cols=126 Identities=12% Similarity=0.028 Sum_probs=115.5
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
..++++-.+-..+++++.++|++ +.+++.+|.++...|++++|+.+|++++.++|+++.+|.
T Consensus 13 ~~l~~~~~~~~~l~~al~l~p~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~-------- 74 (151)
T 3gyz_A 13 TAVIDAINSGATLKDINAIPDDM----------MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM-------- 74 (151)
T ss_dssp HHHHHHHHTSCCTGGGCCSCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--------
T ss_pred HHHHHHHHCCCCHHHHhCCCHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------
Confidence 34444455567789999999975 558899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
++|.++..+|+|++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|+..
T Consensus 75 ----~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 75 ----GLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp ----HHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ----HHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 7999999999999999999999999999999999999999999999999999999999999875
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.73 E-value=1.3e-16 Score=159.57 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=162.4
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAIN--------SSKATYRSNKSAALIGLGRQIEALVECKEAIRI------ 322 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 322 (713)
..+.++..+|.++...|++++|+.+|+++++.. |....++..+|.++...|++++|+.+|++++.+
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 345679999999999999999999999999873 556789999999999999999999999999998
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc-----cccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005125 323 --DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN-----QKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVI 395 (713)
Q Consensus 323 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 395 (713)
+|....++..+|.+|...|++++|+.+|++++. +. ++++ .....+..++.++...|++++|+..+++++
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE-IYATRLGPDDP---NVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHSCTTCH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCCCCH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788999999999999999999999999999 61 1121 234677889999999999999999999999
Q ss_pred HcC---------CCChHHHHHHHHHHHHHcc------CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc
Q 005125 396 SFG---------ADSAPQVYALQAEALLRLQ------RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA 460 (713)
Q Consensus 396 ~~~---------p~~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 460 (713)
... +.. ..++..++..+...+ .+.++...++......|. .+.++..+|.+|...
T Consensus 197 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~la~~~~~~ 265 (283)
T 3edt_B 197 TRAHEKEFGSVNGDN-KPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT----------VNTTLRSLGALYRRQ 265 (283)
T ss_dssp HHHHHHHSSSCCSSC-CCHHHHHHHHHHTTCCCCC------------CCCCCCHH----------HHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCcchhH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH----------HHHHHHHHHHHHHHc
Confidence 862 222 245566666665543 355566666666555553 455889999999999
Q ss_pred CCHHHHHHHHHHHHHhC
Q 005125 461 GRFEDAVKTAQDAAQID 477 (713)
Q Consensus 461 g~~~~A~~~~~~al~~~ 477 (713)
|++++|+.+|++++++.
T Consensus 266 g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 266 GKLEAAHTLEDCASRNR 282 (283)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999998753
No 98
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.72 E-value=1.4e-15 Score=152.60 Aligned_cols=233 Identities=10% Similarity=-0.009 Sum_probs=186.1
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh
Q 005125 304 IGLGRQI-EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELK 382 (713)
Q Consensus 304 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 382 (713)
...|.+. +|+..+.+++.++|++..+|+..+.++..++.. ..|+. ...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~-------------~~~~~------------------~~~ 88 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE-------------KSPEE------------------SAA 88 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH-------------SCHHH------------------HHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc-------------ccchh------------------hhH
Confidence 3456665 799999999999999999999999998776541 01100 012
Q ss_pred cHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC--HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc
Q 005125 383 RWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR--HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA 460 (713)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 460 (713)
.+++++..+..++..+|.+. .+|..++.++..+++ +++++.++.+++..+|. +..+|..++.++...
T Consensus 89 ~l~~EL~~~~~~L~~~PKny-~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr----------Ny~AW~~R~~vl~~l 157 (331)
T 3dss_A 89 LVKAELGFLESCLRVNPKSY-GTWHHRCWLLSRLPEPNWARELELCARFLEADER----------NFHCWDYRRFVAAQA 157 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHh
Confidence 34455556666666666664 889999999999984 89999999999999985 555899999999999
Q ss_pred CC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc--------------ccHHHHHHHHHHHhccCCC
Q 005125 461 GR-FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA--------------SKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 461 g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~p~ 525 (713)
|. ++++++++.++++.+|.+..+|. .++.++... +.++++++++.+++..+|+
T Consensus 158 ~~~~~eel~~~~~~I~~~p~N~SAW~------------~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~ 225 (331)
T 3dss_A 158 AVAPAEELAFTDSLITRNFSNYSSWH------------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 225 (331)
T ss_dssp TCCHHHHHHHHHHHHHHCSCCHHHHH------------HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT
T ss_pred CcCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC
Confidence 99 69999999999999999999998 577777766 6799999999999999999
Q ss_pred CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCChHHHH---------------HHHHHHHHHHHHhC
Q 005125 526 NSVLLCNRAACRSKL-----------GQYEKAVEDCTAALIVMPSYSKARL---------------EAAIQDYEMLIREI 579 (713)
Q Consensus 526 ~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~---------------~~A~~~~~~al~~~ 579 (713)
+..+|+.+..++... +.++++++.+++++++.|++...+. ++....+.+++++|
T Consensus 226 d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 226 DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 999998666665554 4589999999999999999865543 56677888888888
Q ss_pred CCCHHHHHHHH
Q 005125 580 PGNEEVGRALF 590 (713)
Q Consensus 580 p~~~~~~~~l~ 590 (713)
|.....+..+.
T Consensus 306 p~r~~~y~d~~ 316 (331)
T 3dss_A 306 PMRAAYLDDLR 316 (331)
T ss_dssp GGGHHHHHHHH
T ss_pred cchhhHHHHHH
Confidence 87776655543
No 99
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.72 E-value=6.8e-16 Score=155.49 Aligned_cols=242 Identities=12% Similarity=-0.015 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-RQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+++..+.......+..++|+.++.++|.++|++..+|+.++.++..+| .+++++.++++++..+|++..+|+..+.++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3455556666666677789999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHc-C-CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 338 FRL-G-EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 338 ~~~-g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
..+ + +++++++++.+++. .+|.+. .+|..++.++..
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~-~dpkNy-----------------------------------------~AW~~R~wvl~~ 171 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLL-PDPKNY-----------------------------------------HTWAYLHWLYSH 171 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTS-SCTTCH-----------------------------------------HHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHH-hCCCCH-----------------------------------------HHHHHHHHHHHH
Confidence 998 8 89999999999999 898884 667777777777
Q ss_pred ccCHH--------HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCC
Q 005125 416 LQRHQ--------EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGR-------FEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 416 ~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~p~~ 480 (713)
.+.++ +++++++++++.+|. +..+|..++.++...++ ++++++++++++.++|++
T Consensus 172 l~~~~~~~~~~~~eELe~~~k~I~~dp~----------N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n 241 (349)
T 3q7a_A 172 FSTLGRISEAQWGSELDWCNEMLRVDGR----------NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN 241 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred hccccccchhhHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC
Confidence 77766 999999999998885 55589999999999987 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccH--------------------HHHHHHHHHHhccC------CCCHHHHHHHH
Q 005125 481 KEVIKGVKMAKAMASARLRGNLLFKASKY--------------------KEACYAYSEGLEHE------AYNSVLLCNRA 534 (713)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~------p~~~~~~~~la 534 (713)
..+|.. +..++...|+- .+-.+.....+... +..+.++..|+
T Consensus 242 ~SaW~Y------------lr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~ 309 (349)
T 3q7a_A 242 VSAWNY------------LRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLA 309 (349)
T ss_dssp HHHHHH------------HHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHH
T ss_pred HHHHHH------------HHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHH
Confidence 999984 55555555442 33333333333332 46788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHH-HhCCCChHHH
Q 005125 535 ACRSKLGQYEKAVEDCTAAL-IVMPSYSKAR 564 (713)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~ 564 (713)
.+|...|+.++|++.|+... +.||-....|
T Consensus 310 d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 310 DSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 99999999999999999986 5677655444
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.71 E-value=2.6e-17 Score=152.62 Aligned_cols=165 Identities=13% Similarity=-0.008 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~- 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH- 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH-
Confidence 4555555555555555555555555555555555555555555555555555555555555555 44444333322211
Q ss_pred CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHH
Q 005125 341 GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQ 420 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 420 (713)
..+...+|+..+++++..+|++. .+++.+|.++...|+++
T Consensus 86 ---------------------------------------~~~~~~~a~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~ 125 (176)
T 2r5s_A 86 ---------------------------------------QQAAESPELKRLEQELAANPDNF-ELACELAVQYNQVGRDE 125 (176)
T ss_dssp ---------------------------------------HHHTSCHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHTTCHH
T ss_pred ---------------------------------------hhcccchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcccHH
Confidence 11111224455555555555553 78888999999999999
Q ss_pred HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 421 EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 421 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
+|+..|+++++..|+. .+..++..+|.++...|+.++|+..|++++.
T Consensus 126 ~A~~~~~~~l~~~p~~--------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 126 EALELLWNILKVNLGA--------QDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHTTCTTT--------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccc--------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999988853 2345788899999999999999999998875
No 101
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.71 E-value=1.2e-16 Score=155.76 Aligned_cols=68 Identities=10% Similarity=-0.001 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNK-------SAALIGLGRQIEALVECKEAIRIDPCYHRA 329 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 329 (713)
.++..|..+ ..+++.+|+.+|.++++++|+..++|.++ +.++..++++.+++..+++++.+.|....+
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 355555554 46777777777777777777777777777 677777777777777777777766654333
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.71 E-value=3e-16 Score=136.14 Aligned_cols=108 Identities=22% Similarity=0.233 Sum_probs=102.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..+..+|..|++.|++++|+.+|+++++++|.++.++. ++|.++..+|++++|+..|+++++++|+
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYS------------NRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 4568899999999999999999999999999999999988 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
++.+|+++|.+|..+|++++|+..|+++++++|++..++.
T Consensus 80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~ 119 (126)
T 4gco_A 80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 9999999999999999999999999999999999877654
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.70 E-value=1.7e-16 Score=159.65 Aligned_cols=176 Identities=13% Similarity=0.063 Sum_probs=137.9
Q ss_pred hHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 250 CISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRA 329 (713)
Q Consensus 250 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 329 (713)
++....|.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+....
T Consensus 108 ~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 187 (287)
T 3qou_A 108 LLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ 187 (287)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred HHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence 33345577777788888888888888888888888888888888888888888888888888888888888888866666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQ 409 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 409 (713)
+...+..+...++.++|+..|++++. .+|++ +.+++.+
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~-~~P~~-----------------------------------------~~~~~~l 225 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVA-ENPED-----------------------------------------AALATQL 225 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHH-HCTTC-----------------------------------------HHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHh-cCCcc-----------------------------------------HHHHHHH
Confidence 66666667777777777777777777 77766 3778888
Q ss_pred HHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 410 AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
|.+|...|++++|+..|+++++..|++ .+..++..++.++...|+.++|+..|++++.
T Consensus 226 a~~l~~~g~~~~A~~~l~~~l~~~p~~--------~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 226 ALQLHQVGRNEEALELLFGHLRXDLTA--------ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTG--------GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccc--------ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 888888888888888888888888864 2355788888899889998899888888875
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.70 E-value=2.8e-16 Score=145.64 Aligned_cols=80 Identities=15% Similarity=0.017 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcC
Q 005125 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN--SVLLCNRAACRSKLG 541 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g 541 (713)
.+|+..|+++++.+|+++.++. .+|.++...|++++|+..|+++++.+|+. +.++.++|.++..+|
T Consensus 91 ~~a~~~~~~al~~~P~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 91 SPELKRLEQELAANPDNFELAC------------ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp CHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 4578899999999999988887 68999999999999999999999999875 668999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 005125 542 QYEKAVEDCTAALI 555 (713)
Q Consensus 542 ~~~~A~~~~~~al~ 555 (713)
+.++|+..|++++.
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999998875
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.70 E-value=9.4e-16 Score=154.23 Aligned_cols=169 Identities=12% Similarity=0.042 Sum_probs=125.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHH
Q 005125 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 368 (713)
.|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++. .+|+..
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-~~p~~~------ 185 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-QDQDTR------ 185 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-GGCSHH------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-hhcchH------
Confidence 4777777778888888888888888888888888888888888888888888888888888877777 666431
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHH
Q 005125 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAY 448 (713)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (713)
.
T Consensus 186 -----------------------------------~-------------------------------------------- 186 (287)
T 3qou_A 186 -----------------------------------Y-------------------------------------------- 186 (287)
T ss_dssp -----------------------------------H--------------------------------------------
T ss_pred -----------------------------------H--------------------------------------------
Confidence 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC--
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN-- 526 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 526 (713)
.+...+..+...++.++|+..|++++..+|++..++. ++|.++...|++++|+..|+++++.+|++
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~------------~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALAT------------QLALQLHQVGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHH------------HHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 2223344555666667777777777777777777776 57777777788888888888777777776
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
..++.+++.++..+|+.++|+..|++++.
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 77777788888888887777777777764
No 106
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=6.9e-18 Score=173.62 Aligned_cols=253 Identities=12% Similarity=0.033 Sum_probs=96.9
Q ss_pred CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 245 GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324 (713)
Q Consensus 245 ~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 324 (713)
++|.+++++. +++++|..+|.++...|++++|++.|.++ .++..+...+.++...|++++|+.+++.+++..+
T Consensus 20 d~A~~fae~~--~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~ 92 (449)
T 1b89_A 20 DRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC--CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc
Confidence 5677777775 33458888888888888888888888764 3455778888888888888888888888887544
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHH
Q 005125 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQ 404 (713)
Q Consensus 325 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 404 (713)
+ +.+...++.+|.++|+++++.++++. |+. ..+...|..+...|.|++|...|.++ .
T Consensus 93 ~-~~i~~~Li~~Y~Klg~l~e~e~f~~~------pn~-------~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 93 E-SYVETELIFALAKTNRLAELEEFING------PNN-------AHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp -----------------CHHHHTTTTTC------C-----------------------CTTTHHHHHHHT---------T
T ss_pred c-chhHHHHHHHHHHhCCHHHHHHHHcC------CcH-------HHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 4 66777888888888888887766532 322 25667777777777777777777765 3
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 484 (713)
.|..+|.++.++|++++|++.|+++. ++..|.....++...|+++.|..+... +..+|++ .
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA~---------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l 210 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKAN---------------STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---L 210 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHT---------------CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---H
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHcC---------------CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---H
Confidence 56667777777777777777777772 233566667777777777777665554 2233322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK--LGQYEKAVEDCTAALIVMP 558 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p 558 (713)
. .+...|.+.|++++|+.++++++.+++.+..++..+|.+|.+ .++..++++.|...+.+.|
T Consensus 211 ~------------~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 211 E------------ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp H------------HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred H------------HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 2 356677777777777777777777777777777777776653 4455666666655555544
No 107
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=99.69 E-value=2.7e-16 Score=130.55 Aligned_cols=100 Identities=23% Similarity=0.408 Sum_probs=90.5
Q ss_pred ceeecchhHHHHHhhcC--CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVTSP--GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~--~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+.+.++|...+... ..+++.|++ ||+|+.+.|.++++++.++++.|+.||+|+.++++..++|.++|||++|+
T Consensus 2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~ 81 (105)
T 3zzx_A 2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMK 81 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCCCeecEEEEEE
Confidence 45567778899887653 456667999 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|+.++++.|+++++|.++|++++
T Consensus 82 ~G~~v~~~~G~~~~~l~~~i~k~K 105 (105)
T 3zzx_A 82 NGQKLDSLSGANYDKLLELVEKNK 105 (105)
T ss_dssp TTEEEEEEESCCHHHHHHHHHHHC
T ss_pred CCEEEEEEeCcCHHHHHHHHHhcC
Confidence 999999999999999999999873
No 108
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.68 E-value=1.1e-15 Score=148.86 Aligned_cols=223 Identities=14% Similarity=0.062 Sum_probs=175.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHH
Q 005125 296 RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL-------AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368 (713)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 368 (713)
++..|.-+ .-+++.+|...|.+++.++|+..++|..+ +.++...+++.+++..+.+.+. +.|......
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~-l~p~~l~a~--- 84 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ-ISMSTLNAR--- 84 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT-CCGGGGCCE---
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc-CChhhhhhh---
Confidence 34445555 57999999999999999999999999999 8999999999999999999999 888762100
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHH
Q 005125 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAY 448 (713)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (713)
+.+ .|-|. -++.--.....++..++.++...|+|++|.+.|..++...|++ .
T Consensus 85 ---~~~------~g~y~--------~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~----------~- 136 (282)
T 4f3v_A 85 ---IAI------GGLYG--------DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH----------L- 136 (282)
T ss_dssp ---EEC------CTTTC--------CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH----------H-
T ss_pred ---hcc------CCccc--------ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch----------H-
Confidence 000 00000 0000011223677778999999999999999999999887753 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--C
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN--KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE--A 524 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p 524 (713)
..+.+|.+++..+++++|+.+|++++...+.. ..++. .+|.++..+|++++|+.+|++++... |
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~------------~LG~al~~LG~~~eAl~~l~~a~~g~~~P 204 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV------------AHGVAAANLALFTEAERRLTEANDSPAGE 204 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHTSTTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHH------------HHHHHHHHCCCHHHHHHHHHHHhcCCCCc
Confidence 67889999999999999999999876643111 12333 79999999999999999999998654 5
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 525 Y-NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 525 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
. .+++++++|.++.++|+.++|...|++++..+|+ ..++
T Consensus 205 ~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 205 ACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 5 5679999999999999999999999999999998 5443
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.67 E-value=3.8e-16 Score=139.64 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=104.8
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
++|+++++++.+|..++..|++++|+.+|++++.++|+++.+|+++|.+|..+|++++|+.+|++++.++|+++.+|+++
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 67788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+|++++|+.+|++++. +.|+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~-l~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQ-HSNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCCCHH
Confidence 9999999999999999999999 998864
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.67 E-value=1.3e-15 Score=155.06 Aligned_cols=191 Identities=15% Similarity=0.085 Sum_probs=140.4
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 005125 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------HRAHHRLAMLYFRLGEAEK 345 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 345 (713)
.+++++|+.+|.++ |.+|...|++++|+.+|.+++.+.+.. ..++..+|.+|..+|++++
T Consensus 29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 94 (307)
T 2ifu_A 29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPE 94 (307)
T ss_dssp SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 46777777777765 456677777777777777777764422 4567777777777777777
Q ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-----hHHHHHHHHHHHHHccCHH
Q 005125 346 AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS-----APQVYALQAEALLRLQRHQ 420 (713)
Q Consensus 346 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~~~ 420 (713)
|+.+|++++. +.+...........+..++.++.. |++++|+..|++++.+.+.. ...++..+|.+|..+|+++
T Consensus 95 A~~~~~~Al~-l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 95 AVQYIEKASV-MYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 7777777777 543322222334556667777766 77777777777777765432 2468889999999999999
Q ss_pred HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 421 EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 421 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
+|+.+|++++.+.++..... ....++..+|.++..+|++++|+.+|++++ ++|.....
T Consensus 173 ~A~~~~~~al~~~~~~~~~~----~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYP----TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHHHHHHHHHHcCChh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 99999999998876542211 134578899999999999999999999999 99976543
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.67 E-value=1.2e-15 Score=169.52 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=127.9
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYK 351 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 351 (713)
.|++++|+.+|+++++.+|++..+++.+|.++...|++++|+.+|+++++++|++..++..+|.+|..+|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhcccc
Q 005125 352 KSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPK 431 (713)
Q Consensus 352 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (713)
++++ ++|++. .++..+|.+|...|++++|+.+|+++++
T Consensus 82 ~al~-~~p~~~-----------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 82 QASD-AAPEHP-----------------------------------------GIALWLGHALEDAGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp HHHH-HCTTCH-----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHh-cCCCCH-----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999 888763 6778888888899999999999998888
Q ss_pred CChhhHHhhhcccCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 432 FCLEYYTKLFGLAGGAYLLIVRAQVYIAA---GRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
..|+ +..++..+|.++... |++++|+..|+++++.+|.+...+.
T Consensus 120 ~~p~----------~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 120 LLPE----------EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFA 166 (568)
T ss_dssp HCTT----------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHH
T ss_pred hCCC----------CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHH
Confidence 8774 455788889999999 9999999999999999988877665
No 112
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=99.66 E-value=3.4e-16 Score=133.41 Aligned_cols=94 Identities=13% Similarity=0.215 Sum_probs=86.0
Q ss_pred chhHHHHHhhcCC-ceEEEeec--C--chhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPG-MAVVLFCS--K--AEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~-~~vv~f~~--c--g~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+..+|...+...+ .++++|++ | |+|+++.|++++++++| +.+.|++||+|+.+.++.+|+|+++||+++|++|+
T Consensus 21 t~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTlilFkdG~ 100 (137)
T 2qsi_A 21 DEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPER 100 (137)
T ss_dssp CTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEEEEECCE
T ss_pred CHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 3468888776665 88999999 8 99999999999999999 56999999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.++++.|. +.++|.++|+++
T Consensus 101 ~v~~~vG~~~k~~l~~~l~~~ 121 (137)
T 2qsi_A 101 TLGVIAKIQDWSSYLAQIGAM 121 (137)
T ss_dssp EEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHHH
Confidence 99999999 889999999865
No 113
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=1.3e-15 Score=152.55 Aligned_cols=198 Identities=16% Similarity=0.209 Sum_probs=154.1
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
|.++..++.+|..++..|++++|+.+|+++++.+|+++.+++++|.+|..+|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
+|..+|++++|+.+|++++. ++|++..... ..............|.. ......+... .+...++.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~-l~p~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~i~~~l~~l~-- 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS-LAKEQRLNFG---DDIPSALRIAKKKRWNS------IEERRIHQES-ELHSYLTRLI-- 147 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HHHHTTCCCC---SHHHHHHHHHHHHHHHH------HHHTCCCCCC-HHHHHHHHHH--
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCccchhhHH---HHHHHHHHHHHHHHHHH------HHHHHHhhhH-HHHHHHHHHH--
Confidence 99999999999999999999 8886521000 00111111111122222 2223444443 5555555554
Q ss_pred ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 005125 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA-GRFEDAVKTAQDAAQI 476 (713)
Q Consensus 416 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~ 476 (713)
.|++++|++.|+++++..|++. .....++.++... +.+++|...|.++.+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDG----------HIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHH----------HHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchh----------hhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7999999999999999988643 2444556666655 7789999999988764
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=2.6e-15 Score=166.91 Aligned_cols=162 Identities=12% Similarity=0.067 Sum_probs=136.2
Q ss_pred hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc
Q 005125 381 LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA 460 (713)
Q Consensus 381 ~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 460 (713)
.|++++|+..++++++.+|++. .++..+|.+|...|++++|+.+|++++++.|+ ++.++..+|.+|..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF-VAWLMLADAELGMGDTTAGEMAVQRGLALHPG----------HPEAVARLGRVRWTQ 70 (568)
T ss_dssp -------------------CCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT----------CHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHC
Confidence 4788999999999999999985 89999999999999999999999999999985 566899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005125 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL 540 (713)
Q Consensus 461 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 540 (713)
|++++|+.+|+++++++|++..++. ++|.++...|++++|++.|+++++++|++..++.++|.++..+
T Consensus 71 g~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAAPEHPGIAL------------WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998887 7999999999999999999999999999999999999999999
Q ss_pred ---CCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 541 ---GQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 541 ---g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|++++|+..|+++++.+|++...+.
T Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 139 CDWRALDVLSAQVRAAVAQGVGAVEPFA 166 (568)
T ss_dssp TCCTTHHHHHHHHHHHHHHTCCCSCHHH
T ss_pred hccccHHHHHHHHHHHHhcCCcccChHH
Confidence 9999999999999999999877765
No 115
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=99.65 E-value=5.7e-16 Score=133.74 Aligned_cols=99 Identities=9% Similarity=0.110 Sum_probs=89.4
Q ss_pred ceeecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 613 LVFVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 613 i~~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+.+..+|.+.+. ..+.+++.|++ ||+|+++.|+|+++++++++ +.|++||+|+.|+++..++|.++|||+||
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF 102 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF 102 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 566788899988774 46678888999 99999999999999999964 99999999999999999999999999999
Q ss_pred ECCeEe--e-------eecCC-C-HHHHHHHHHhh
Q 005125 688 KNGSRV--K-------EIPGH-Q-CELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~~~--~-------~~~g~-~-~~~~~~~~~~~ 711 (713)
++|+.+ + ++.|+ + .++|.++|+.+
T Consensus 103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~ 137 (160)
T 2av4_A 103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETI 137 (160)
T ss_dssp ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence 999998 6 89999 4 99999999875
No 116
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=99.64 E-value=4.3e-16 Score=133.34 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=86.3
Q ss_pred chhHHHHHhhcCCceEEEeec----CchhHHHHHHHHHHHHhCC-C-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPGMAVVLFCS----KAEHKQVLQLMEQVCKRFP-S-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~----cg~c~~~~~~~~~l~~~~p-~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+..+|...+...+.++++|++ ||+|+++.|+|++++++|+ . +.|++||+|+.+.++.+|||+++||+++|++|+
T Consensus 23 t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G~ 102 (140)
T 2qgv_A 23 SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGN 102 (140)
T ss_dssp CHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETTE
T ss_pred CHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 457888888777788888866 8999999999999999995 5 899999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
.++++.|+ +.++|.++|+++.
T Consensus 103 ~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 103 YRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp EEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEecCCCHHHHHHHHHHHh
Confidence 99999999 8899999998763
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=9.3e-15 Score=139.81 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
..++.+|.++...|++++|+..|++++.. .+.+++.+|.+|...|++++|+.+|++++.++|++..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 73 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP-------------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC-------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 45677899999999999999999999632 35589999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH----------------HHHHHHHHHHHHcCCHHHHH
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS----------------VLLCNRAACRSKLGQYEKAV 547 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~ 547 (713)
+. ++|.++...|++++|+..|+++++..|.+. .+++++|.+|..+|++++|+
T Consensus 74 ~~------------~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 74 YF------------QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HH------------HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HH------------HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 87 799999999999999999999999888766 99999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 005125 548 EDCTAALIVMPSYSKARLEAAIQDYEMLI 576 (713)
Q Consensus 548 ~~~~~al~~~p~~~~a~~~~A~~~~~~al 576 (713)
..|+++++++|++.....+.|+..+++..
T Consensus 142 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 170 (213)
T 1hh8_A 142 EQLALATSMKSEPRHSKIDKAMECVWKQK 170 (213)
T ss_dssp HHHHHHHTTCCSGGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCcccccchHHHHHHHHHhcc
Confidence 99999999999987777777777665443
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.63 E-value=1.9e-15 Score=151.33 Aligned_cols=198 Identities=13% Similarity=0.084 Sum_probs=157.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHH
Q 005125 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH 369 (713)
Q Consensus 290 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~ 369 (713)
|.++..+..+|.++...|++++|+..|++++.++|+++.++.++|.+|..+|++++|+..|++++. ++|++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~------- 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQSV------- 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SCTTCH-------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCCH-------
Confidence 567889999999999999999999999999999999999999999999999999999999999999 888773
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHH
Q 005125 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYL 449 (713)
Q Consensus 370 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 449 (713)
.+++.+|.+|..+|++++|+..|++++.+.|+....+ ...+
T Consensus 73 ----------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-----~~~~ 113 (281)
T 2c2l_A 73 ----------------------------------KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF-----GDDI 113 (281)
T ss_dssp ----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC-----CSHH
T ss_pred ----------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhH-----HHHH
Confidence 7888889999999999999999999999888653221 1111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH
Q 005125 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL 529 (713)
Q Consensus 450 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 529 (713)
+..+ +..++...........+.+..... .++.++ .|++++|++.|+++++.+|++...
T Consensus 114 ~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~------------~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~ 171 (281)
T 2c2l_A 114 PSAL--------RIAKKKRWNSIEERRIHQESELHS------------YLTRLI--AAERERELEECQRNHEGHEDDGHI 171 (281)
T ss_dssp HHHH--------HHHHHHHHHHHHHTCCCCCCHHHH------------HHHHHH--HHHHHHHHTTTSGGGTTTSCHHHH
T ss_pred HHHH--------HHHHHHHHHHHHHHHHhhhHHHHH------------HHHHHH--HHHHHHHHHHHHhhhccccchhhh
Confidence 1111 122233333344456677777665 244443 799999999999999999998888
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 005125 530 LCNRAACRSKL-GQYEKAVEDCTAALIV 556 (713)
Q Consensus 530 ~~~la~~~~~~-g~~~~A~~~~~~al~~ 556 (713)
...++.++... +.+++|...|.++.+.
T Consensus 172 ~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 172 RAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888877776 6788888888877664
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=4.7e-17 Score=167.58 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHh-----hhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTK-----LFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 478 (713)
.++..+|.+|...|++++|+.+|++++.+.|+.... .......+.+++++|.+|..+|++++|+.+|+++++++|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 566667777777777777777777777776653100 000001256899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 005125 479 NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKA-VEDCTAALIV 556 (713)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 556 (713)
++..++. ++|.++..+|++++|+.+|+++++++|++..++.+++.++..+|++++| ...|++++..
T Consensus 228 ~~~~a~~------------~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 228 NNEKGLS------------RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp TCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 7999999999999999999999999999999999999999999999999 5577776653
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.63 E-value=3.3e-15 Score=133.73 Aligned_cols=119 Identities=16% Similarity=0.114 Sum_probs=110.2
Q ss_pred HHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005125 423 HDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL 502 (713)
Q Consensus 423 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~ 502 (713)
-..|++++.+.|+. ...++.+|.++...|++++|+..|++++..+|+++.+|. .+|.+
T Consensus 7 ~~~~~~al~~~p~~----------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~ 64 (148)
T 2vgx_A 7 GGTIAMLNEISSDT----------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFL------------GLGAC 64 (148)
T ss_dssp CCSHHHHTTCCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHH
T ss_pred hhhHHHHHcCCHhh----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHH------------HHHHH
Confidence 34677888888864 557889999999999999999999999999999999987 69999
Q ss_pred HHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 005125 503 LFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 503 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
+...|++++|+.+|++++.++|+++.+++++|.+|..+|++++|+..|+++++++|+++..
T Consensus 65 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 65 RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999987654
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=1.6e-15 Score=156.13 Aligned_cols=177 Identities=13% Similarity=0.148 Sum_probs=143.8
Q ss_pred CchhHHHHHHHh----hhhcCCCccccccccccccchhhhhc------------CCC--CchhhhHhh---cCCCCHHHH
Q 005125 204 NATVKTVDYLYK----NLQDVPKQRYGESRLGRNGVMGNIVK------------QPS--GEFPQCISS---LNKLDPEEL 262 (713)
Q Consensus 204 ~~~~~Ai~~~~k----al~~~P~~~~~~~~~~~~~~lg~~~~------------~~~--~~a~~~~~~---~~~~~~~~~ 262 (713)
...++|+..+++ ++.++|...+.. .|.... ... +.|...++. ..|.++.++
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~ayg~--------~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~ 150 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSYAFGS--------VGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV 150 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTTTTTT--------TCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCccccCc--------CCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH
Confidence 345699999999 899987532222 111110 111 345655555 577888999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 263 KFMGNEAYNKARFEDALALYDRAIAINSSK---------------ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH 327 (713)
Q Consensus 263 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 327 (713)
+.+|..++..|+|++|+.+|+++++++|.+ ..+++++|.+|..+|++++|+.+|+++++++|++.
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 230 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 230 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 005125 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA 407 (713)
Q Consensus 328 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 407 (713)
.+++.+|.+|..+|++++|+.+|+++++ ++|.+. .++.
T Consensus 231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~~~-----------------------------------------~a~~ 268 (336)
T 1p5q_A 231 KGLSRRGEAHLAVNDFELARADFQKVLQ-LYPNNK-----------------------------------------AAKT 268 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSSCH-----------------------------------------HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCCH-----------------------------------------HHHH
Confidence 9999999999999999999999999999 999874 5666
Q ss_pred HHHHHHHHccCHHHH-HHHhhccc
Q 005125 408 LQAEALLRLQRHQEA-HDSYNKSP 430 (713)
Q Consensus 408 ~la~~~~~~g~~~~A-~~~~~~al 430 (713)
.++.++..+|++++| ...|++++
T Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 269 QLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777776 34555544
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=3.8e-14 Score=135.48 Aligned_cols=187 Identities=10% Similarity=-0.020 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 005125 276 EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG----EAEKAVSHYK 351 (713)
Q Consensus 276 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 351 (713)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.||.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3567777777765 56777778888887778888888888887664 467778888887777 5 7777777777
Q ss_pred HHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH----ccCHHHHHHHhh
Q 005125 352 KSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR----LQRHQEAHDSYN 427 (713)
Q Consensus 352 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 427 (713)
++.+ . .+ +.+++.+|.+|.. .+++++|+.+|+
T Consensus 78 ~A~~-~--g~-----------------------------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 113 (212)
T 3rjv_A 78 KAVE-A--GS-----------------------------------------KSGEIVLARVLVNRQAGATDVAHAITLLQ 113 (212)
T ss_dssp HHHH-T--TC-----------------------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHH-C--CC-----------------------------------------HHHHHHHHHHHHcCCCCccCHHHHHHHHH
Confidence 7755 2 22 3566777777776 677777777777
Q ss_pred ccccCChhhHHhhhcccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 428 KSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA----AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 428 ~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
+++...+.. ..+.+++.+|.+|.. .+++++|+.+|+++++. +.++.++. ++|.+|
T Consensus 114 ~A~~~~~~~--------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~------------~Lg~~y 172 (212)
T 3rjv_A 114 DAARDSESD--------AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY------------WAGMMF 172 (212)
T ss_dssp HHTSSTTSH--------HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH------------HHHHHH
T ss_pred HHHHcCCCc--------chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH------------HHHHHH
Confidence 777765521 024577788888888 77888888888888877 55555555 578877
Q ss_pred HHc-c-----cHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005125 504 FKA-S-----KYKEACYAYSEGLEHEAYNSVLLCNRA 534 (713)
Q Consensus 504 ~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~la 534 (713)
..- | ++++|+.+|+++++.. +..+...++
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~ 207 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFD 207 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 653 2 7888888888887764 344444443
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=1.1e-14 Score=139.30 Aligned_cols=178 Identities=18% Similarity=0.088 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 005125 310 IEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLK 389 (713)
Q Consensus 310 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 389 (713)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++ .. +
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~g--~---------------------------- 49 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA-QG--D---------------------------- 49 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TT--C----------------------------
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cC--C----------------------------
Confidence 4688899999875 6899999999999999999999999999977 32 2
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHcc----CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH----cC
Q 005125 390 ETQNVISFGADSAPQVYALQAEALLRLQ----RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA----AG 461 (713)
Q Consensus 390 ~~~~al~~~p~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g 461 (713)
+.+++.+|.+|.. + ++++|+.+|+++... ..+.+++++|.+|.. .+
T Consensus 50 -------------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~------------g~~~a~~~Lg~~y~~g~g~~~ 103 (212)
T 3rjv_A 50 -------------GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA------------GSKSGEIVLARVLVNRQAGAT 103 (212)
T ss_dssp -------------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHTCGGGSSC
T ss_pred -------------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCcc
Confidence 3788889999998 7 899999999999643 356789999999998 89
Q ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005125 462 RFEDAVKTAQDAAQIDPN--NKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535 (713)
Q Consensus 462 ~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 535 (713)
++++|+.+|+++++..+. ++.++. ++|.+|.. .+++++|+.+|+++++. +.++.++++||.
T Consensus 104 d~~~A~~~~~~A~~~~~~~~~~~a~~------------~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 104 DVAHAITLLQDAARDSESDAAVDAQM------------LLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGM 170 (212)
T ss_dssp CHHHHHHHHHHHTSSTTSHHHHHHHH------------HHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcchHHHHH------------HHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 999999999999998874 466665 79999999 89999999999999998 678889999999
Q ss_pred HHHHc-C-----CHHHHHHHHHHHHHhCCC
Q 005125 536 CRSKL-G-----QYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 536 ~~~~~-g-----~~~~A~~~~~~al~~~p~ 559 (713)
+|..- | ++++|+.+|+++.+....
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 99875 3 899999999999988543
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.60 E-value=1.9e-14 Score=127.85 Aligned_cols=120 Identities=17% Similarity=0.137 Sum_probs=108.2
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
..|++++.+.|+. ...++.+|.++...|++++|+..|++++..+|+++.+|. .+|.++
T Consensus 5 ~~l~~al~~~p~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~ 62 (142)
T 2xcb_A 5 GTLAMLRGLSEDT----------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFL------------GLGACR 62 (142)
T ss_dssp ----CCTTCCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHH
T ss_pred hhHHHHHcCCHHH----------HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHH------------HHHHHH
Confidence 5788899999864 457889999999999999999999999999999999988 699999
Q ss_pred HHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 504 FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 504 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
...|++++|+.+|++++.++|+++.+++++|.+|..+|++++|+..|+++++++|+++....
T Consensus 63 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 63 QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999998765433
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.59 E-value=5.2e-14 Score=141.79 Aligned_cols=179 Identities=12% Similarity=0.003 Sum_probs=160.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 005125 301 AALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG-EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379 (713)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~ 379 (713)
.+....+..++|+..+.++|.++|++..+|+..+.++..+| .+++++.++.+++. .+|++.
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-~nPKny----------------- 123 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-QNLKSY----------------- 123 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-TTCCCH-----------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-hCCCcH-----------------
Confidence 33344455678999999999999999999999999999999 59999999999999 888874
Q ss_pred HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc-c-CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHH
Q 005125 380 ELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL-Q-RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVY 457 (713)
Q Consensus 380 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~ 457 (713)
.+|..++.++..+ + ++++++.++.+++..+|. +..+|..++.++
T Consensus 124 ------------------------~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk----------Ny~AW~~R~wvl 169 (349)
T 3q7a_A 124 ------------------------QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK----------NYHTWAYLHWLY 169 (349)
T ss_dssp ------------------------HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT----------CHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC----------CHHHHHHHHHHH
Confidence 7888889999888 7 899999999999999995 455889999999
Q ss_pred HHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc-------HHHHHHHHHHHhcc
Q 005125 458 IAAGRFE--------DAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASK-------YKEACYAYSEGLEH 522 (713)
Q Consensus 458 ~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~ 522 (713)
...|.++ +++++++++++.+|.|..+|. .++.++...++ ++++++++.+++..
T Consensus 170 ~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~------------~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 170 SHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG------------WRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 9988887 999999999999999999998 68889888886 89999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCH
Q 005125 523 EAYNSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 523 ~p~~~~~~~~la~~~~~~g~~ 543 (713)
+|++..+|+.+..++...|+-
T Consensus 238 ~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 238 IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999988874
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=5.9e-15 Score=161.82 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=167.0
Q ss_pred HHHHhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 268 EAYNKARF-EDALALYDRAIAINSSKATYRSNKSAALIGLGR----------QIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 268 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
.....|++ ++|+.++++++..+|++..+|+.++.++..+|+ +++++.+++++++.+|++..+|+..+.+
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33445554 678999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHcC--CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 005125 337 YFRLG--EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALL 414 (713)
Q Consensus 337 ~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 414 (713)
+...+ ++++|++++.++++ .+|.+. .+|..++.++.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~-~d~~N~-----------------------------------------~aW~~R~~~l~ 154 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLE-ADERNF-----------------------------------------HCWDYRRFVAA 154 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHh-hccccc-----------------------------------------cHHHHHHHHHH
Confidence 99999 77999999999999 888884 67777788888
Q ss_pred Hcc-CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCC
Q 005125 415 RLQ-RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA--------------GRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 415 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~p~ 479 (713)
..| .++++++++.++++.+|. +..+|+.++.++..+ +.+++|++++.+|+.++|+
T Consensus 155 ~l~~~~~~el~~~~~~I~~~p~----------n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 155 QAAVAPAEELAFTDSLITRNFS----------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp HTCCCHHHHHHHHHTTTTTTCC----------CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred HcCCChHHHHHHHHHHHHHCCC----------CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 888 788888888888888774 445777788887774 5689999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH------------HHHHHHHHhccCCC
Q 005125 480 NKEVIKGVKMAKAMASARLRGNLLFKASKYKE------------ACYAYSEGLEHEAY 525 (713)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~------------A~~~~~~al~~~p~ 525 (713)
+..+|. .++.++...+++++ |+.+|.+++.++|.
T Consensus 225 ~~saW~------------y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 225 DQSAWF------------YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CSHHHH------------HHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred CccHHH------------HHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 999998 58888888888776 67778888888775
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.2e-14 Score=123.47 Aligned_cols=102 Identities=27% Similarity=0.377 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
|..++.++.+|..++..|+|++|+.+|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhc
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLAN 358 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~ 358 (713)
++..+|++++|+.+|++++. ++
T Consensus 81 ~~~~~~~~~~A~~~~~~al~-~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART-KD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HH
T ss_pred HHHHHhCHHHHHHHHHHHHH-hC
Confidence 99999999999999999999 88
No 128
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.58 E-value=1.6e-14 Score=127.10 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSS-------KAT-----YRSNKSAALIGLGRQIEALVECKEAIRI---- 322 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 322 (713)
+..++.+|..++..|+|++|+..|+++|+++|+ +.. +|.++|.++..+|+|++|+.+|+++|++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 457899999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 323 ---DPCYHRAH----HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 323 ---~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+|++..+| +++|.++..+|++++|+.+|+++++ ++|++.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle-l~p~d~ 136 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE-MIEERK 136 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHCC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh-cCCCcH
Confidence 99999999 9999999999999999999999999 999874
No 129
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.57 E-value=8.1e-14 Score=121.79 Aligned_cols=135 Identities=24% Similarity=0.310 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
.++..+|.++...|++++|+..|++++...|+ ...++..+|.++...|++++|+.+|++++...|.+...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc----------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH
Confidence 46778899999999999999999999887764 45688899999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+. .+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++..+|+.
T Consensus 72 ~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 72 WY------------NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HH------------HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HH------------HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 76 699999999999999999999999999999999999999999999999999999999998863
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.57 E-value=3.4e-14 Score=127.09 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=102.8
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
++|.++.+++.+|..++..|++++|+.+|++++..+|.++.+|+.+|.++..+|++++|+.+|++++.++|+++.+++.+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 44566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+|++++|+.+|++++. ++|+++
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~-~~p~~~ 123 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE-LIANXP 123 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HHTTCG
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-HCcCCC
Confidence 9999999999999999999999 888754
No 131
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.57 E-value=8.9e-14 Score=121.52 Aligned_cols=133 Identities=21% Similarity=0.342 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
++++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 419 (713)
.|++++|+..+++++. ..|.+. .++..+|.++...|++
T Consensus 82 ~~~~~~A~~~~~~~~~-~~~~~~-----------------------------------------~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE-LDPRSA-----------------------------------------EAWYNLGNAYYKQGDY 119 (136)
T ss_dssp TTCHHHHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHHHHTTTCH
T ss_pred hcCHHHHHHHHHHHHH-hCCCCh-----------------------------------------HHHHHHHHHHHHHccH
Confidence 9999999999999999 777663 4556667777777777
Q ss_pred HHHHHHhhccccCCh
Q 005125 420 QEAHDSYNKSPKFCL 434 (713)
Q Consensus 420 ~~A~~~~~~al~~~~ 434 (713)
++|+.+|++++...|
T Consensus 120 ~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 120 DEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCC
Confidence 777777777665554
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.57 E-value=9.4e-14 Score=140.17 Aligned_cols=184 Identities=13% Similarity=0.097 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQV 405 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 405 (713)
....+...+..+...|++++|++.+.+++. ..+........ ..+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~-~~~~~~~~~~~-----------------------------------~~~ 117 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELK-KEEYHPEFQQF-----------------------------------LQW 117 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TCCCCHHHHHH-----------------------------------HHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhc-cccCChhHHHH-----------------------------------HHH
Confidence 344555667777777888888877777777 55543211100 134
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA---QIDPNNKE 482 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~ 482 (713)
+..+|.++...|++++|+.+|++++...+..... ...+.++..+|.+|...|++++|+.+|++++ +..|++..
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~ 193 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV----YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence 5557888888888999999988888765432111 0135689999999999999999999999999 45666543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 005125 483 VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY------NSVLLCNRAACRSKLGQYEKA-VEDCTAALI 555 (713)
Q Consensus 483 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~ 555 (713)
.. +..+.++|.++..+|+|++|+.+|++++++.+. .+.+++++|.+|..+|++++| ..+|++|+.
T Consensus 194 ~~--------~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 194 FD--------VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ch--------HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 22 123458999999999999999999999987542 278899999999999999999 788999987
Q ss_pred hC
Q 005125 556 VM 557 (713)
Q Consensus 556 ~~ 557 (713)
+.
T Consensus 266 ~~ 267 (293)
T 2qfc_A 266 FF 267 (293)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.56 E-value=4.7e-14 Score=125.33 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=102.8
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
++|.+++.++.+|..++..|++++|+.+|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|+++.+++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 44566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+|++++|+.+|++++. ++|.++
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~-~~p~~~ 120 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA-LAAAQP 120 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HHHTCG
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCCCCc
Confidence 9999999999999999999999 888764
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.56 E-value=7.7e-14 Score=127.33 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=108.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..++.+|.++...|++++|+.+|+++++++|++..++. ++|.++...|++++|+.+|+++++++|+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLS------------NRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 5678999999999999999999999999999999999887 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYE 573 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~ 573 (713)
++.+|+++|.+|..+|++++|+.+|+++++++|++..+++..++...+
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888765554433
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.55 E-value=1.5e-13 Score=138.69 Aligned_cols=181 Identities=13% Similarity=0.021 Sum_probs=147.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA------TYRSNKSAALIGLGRQIEALVECKEAIRIDPCY--- 326 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 326 (713)
|.....+...+..++..|+|++|+..|.++++..+... ..++.+|.++...|++++|+.+|++++.+.+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44456788899999999999999999999999887654 346778999999999999999999999875543
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 327 ---HRAHHRLAMLYFRLGEAEKAVSHYKKSSSL--ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 327 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
..++..+|.+|..+|++++|+.+|++++.. ..|.+.. .
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~-------------------------------------~ 194 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE-------------------------------------F 194 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH-------------------------------------H
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc-------------------------------------c
Confidence 568999999999999999999999999961 2222210 0
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 005125 402 APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDA-VKTAQDAAQID 477 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~ 477 (713)
...+++++|.+|..+|++++|+.+|++++.+.++... ....+.+++++|.+|..+|++++| ..+|++|+.+.
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~----~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS----MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB----CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 0257888999999999999999999999987653211 112367899999999999999999 88899998753
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.55 E-value=4.2e-14 Score=122.81 Aligned_cols=103 Identities=25% Similarity=0.354 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-------HRAH 330 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 330 (713)
.+.++..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++ ..++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999998765 4689
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
.++|.++..+|++++|+.+|++++. ..|+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~-~~~~~ 116 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS-EFRDP 116 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HSCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-hCcCH
Confidence 9999999999999999999999999 87764
No 137
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.55 E-value=2.6e-14 Score=125.77 Aligned_cols=111 Identities=19% Similarity=0.233 Sum_probs=98.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN-------NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
.+..+..+|..++..|+|++|+..|++|++++|+ +..... ..+|.++|.++..+|+|++|+.+|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~-------a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFD-------AFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccch-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4667889999999999999999999999999999 443111 12345899999999999999999999
Q ss_pred Hhcc-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 005125 519 GLEH-------EAYNSVLL----CNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 519 al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
+|++ +|+++.+| +++|.++..+|++++|+.+|+++++++|++...
T Consensus 83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 9999 99999999 999999999999999999999999999887543
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=8.1e-15 Score=160.73 Aligned_cols=189 Identities=9% Similarity=-0.030 Sum_probs=167.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 005125 308 RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE----------AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE 377 (713)
Q Consensus 308 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~ 377 (713)
..++|+..+++++.++|++..+|+..+.++..+|+ +++|+.++.+++. .+|++.
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~-~~pK~y--------------- 107 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-VNPKSY--------------- 107 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HCTTCH---------------
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH-hCCCCH---------------
Confidence 34688999999999999999999999999999887 7777777777777 666663
Q ss_pred HHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcc--CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHH
Q 005125 378 ARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQ--RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQ 455 (713)
Q Consensus 378 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~ 455 (713)
.+|..++.++..++ ++++|+++++++++.+|. +..+|..++.
T Consensus 108 --------------------------~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~----------N~~aW~~R~~ 151 (567)
T 1dce_A 108 --------------------------GTWHHRCWLLSRLPEPNWARELELCARFLEADER----------NFHCWDYRRF 151 (567)
T ss_dssp --------------------------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT----------CHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc----------cccHHHHHHH
Confidence 88999999999999 779999999999999985 5568999999
Q ss_pred HHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc--------------ccHHHHHHHHHHHh
Q 005125 456 VYIAAG-RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA--------------SKYKEACYAYSEGL 520 (713)
Q Consensus 456 ~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al 520 (713)
++...| .++++++++.++++.+|.+..+|. .++.++... +.+++|++++.+|+
T Consensus 152 ~l~~l~~~~~~el~~~~~~I~~~p~n~saW~------------~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 152 VAAQAAVAPAEELAFTDSLITRNFSNYSSWH------------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp HHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH------------HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHCCCCccHHH------------HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999998 577777764 77899999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHhCCCC
Q 005125 521 EHEAYNSVLLCNRAACRSKLGQYEK------------AVEDCTAALIVMPSY 560 (713)
Q Consensus 521 ~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~p~~ 560 (713)
.++|++..+|+.++.++.+.+++++ |+..|.+++.++|..
T Consensus 220 ~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 220 FTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred hhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 9999999999999999999999777 667788888888763
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.53 E-value=5.6e-13 Score=121.45 Aligned_cols=132 Identities=25% Similarity=0.360 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+..++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++++.++|.++.+++.+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNV 394 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 394 (713)
..+|++++|+.+|++++. ++|.+... ...+..+..+...|++++|+..+.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~-~~p~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVK-VKPHDKDA----KMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHH-HSTTCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH-hCCCCHHH----HHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999999999999 99987521 11233333344445555554444443
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.53 E-value=9.3e-14 Score=126.81 Aligned_cols=107 Identities=27% Similarity=0.426 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
.+.++..++.+|..++..|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|++++.++|++..+|+.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 335 MLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
.+|..+|++++|+.+|++++. ++|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~-~~p~~~ 113 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE-AEGNGG 113 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HHSSSC
T ss_pred HHHHHccCHHHHHHHHHHHHH-hCCCch
Confidence 999999999999999999999 998874
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.2e-13 Score=119.68 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..+..+|..+...|++++|+..|+++++++|+++.++. ++|.++...|++++|+..|+++++++|+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS------------NRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4568899999999999999999999999999999998887 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
++.+++++|.++..+|++++|+..|+++++++
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.52 E-value=1.2e-13 Score=120.00 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=95.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+.++.++|.+++..|+|++|+.+|++|++++|++..++. ++|.++..+|+|++|+..|+++++++|+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~------------nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYN------------NKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------hHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 4668889999999999999999999999999999999887 7999999999999999999999999886
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 526 N-------SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 526 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+ +.++.++|.++..+|++++|+.+|++++...|+.
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 5 4589999999999999999999999999988863
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.52 E-value=3e-13 Score=136.47 Aligned_cols=177 Identities=12% Similarity=0.026 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKAT------YRSNKSAALIGLGRQIEALVECKEAIRIDPCY------HR 328 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 328 (713)
.+...+..++..|+|++|+.+|+++++..+..+. .+..+|.++...+++++|+.+|++++.+.+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3556688899999999999999999998776654 34468999999999999999999999975432 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYAL 408 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 408 (713)
++..+|.+|..+|++++|+.+|++++. ...... + ++.....++.+
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~-~~~~~~-------------------~---------------~~~~~~~~~~n 201 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILK-QLEALH-------------------D---------------NEEFDVKVRYN 201 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSS-------------------C---------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhcc-------------------c---------------chhHHHHHHHH
Confidence 799999999999999999999999997 221100 0 00011368889
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG-RFEDAVKTAQDAAQI 476 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 476 (713)
+|.+|..+|++++|+.++++++.+.+..... ...+.+++.+|.+|..+| ++++|+.+|++|+.+
T Consensus 202 lg~~y~~~~~y~~A~~~~~~al~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSM----ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC----TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH----HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999877654221 124779999999999999 579999999999975
No 144
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.52 E-value=1.7e-13 Score=130.85 Aligned_cols=139 Identities=16% Similarity=0.099 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
...++.+|..++..|++++|+.+|++++ +| ++.+++.+|.++...|++++|+.+|++++.++|++..+++.+|.+|.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3458899999999999999999999995 44 78899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccH----------HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDI----------AKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
.+|++++|+.+|++++. +.|.+. ........++.++..+...|++++|+..+++++...|+.
T Consensus 83 ~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALI-QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHH-TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHH-hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999999 877643 111123456667777777777777777777777777764
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.52 E-value=2.3e-13 Score=118.83 Aligned_cols=108 Identities=26% Similarity=0.333 Sum_probs=103.2
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|.++.+++.+|..++..|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+.+|+++++++|++..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.++...|++++|+.+|++++. .+|.+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~-~~p~~~ 118 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALD-LDSSCK 118 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCGGGT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-hCCCch
Confidence 9999999999999999999999 888773
No 146
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.51 E-value=2e-12 Score=127.63 Aligned_cols=277 Identities=12% Similarity=0.077 Sum_probs=195.1
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK-ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
.+|+.++.+ .-.+-.|+|..++.-. -++.|.+ ....+.+.++|..+|++.... ..+....+...++.
T Consensus 12 ~~~~~lf~i-kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~ 79 (310)
T 3mv2_B 12 QDPMDYFNI-KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQ 79 (310)
T ss_dssp ---CCTHHH-HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHH
T ss_pred CCcHHHHHH-HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHH
Confidence 344444543 3456678898888743 3344433 346666778888888876421 12223335555555
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA-DSAPQVYALQAEALL 414 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~la~~~~ 414 (713)
.+. ++ |+..|++.+. ..+... ...+..+.++...|++++|+..+.+.+..+| ....+++..++.+++
T Consensus 80 ~~~--~~---a~~~l~~l~~-~~~~~~------~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 80 FLD--TK---NIEELENLLK-DKQNSP------YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp HHT--TT---CCHHHHHTTT-TSCCCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred Hhc--cc---HHHHHHHHHh-cCCCCc------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence 442 22 7888888776 543332 2345677888888999999999988888876 344588999999999
Q ss_pred HccCHHHHHHHhhccccCChh--hHHhhhcccCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 415 RLQRHQEAHDSYNKSPKFCLE--YYTKLFGLAGGAYLLIVRAQVYIAAG--RFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 415 ~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
.+|+.+.|.+.++++.+..|+ +.+ ....+...-|++....| ++.+|...|+++....|+......
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~------d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l----- 216 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGD------NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG----- 216 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHH------HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH-----
T ss_pred HCCCHHHHHHHHHHHHhcCccccccc------hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH-----
Confidence 999999999999999888773 111 01223333355566667 999999999999888776222222
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEH----------EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
.+. ++..+|++++|...++.+++. +|+++.++.|++.+...+|+ +|.++++++.+.+|++
T Consensus 217 -------Lln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 217 -------LLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp -------HHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred -------HHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 122 899999999999999988876 58899999999999999998 8999999999999999
Q ss_pred hHHHH-HHHHHHHHHHHHh
Q 005125 561 SKARL-EAAIQDYEMLIRE 578 (713)
Q Consensus 561 ~~a~~-~~A~~~~~~al~~ 578 (713)
+...- .+....|.++...
T Consensus 287 p~i~d~~~k~~~Fd~~~~k 305 (310)
T 3mv2_B 287 AFIKHHQEIDAKFDELVRK 305 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 87765 5556667666543
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.51 E-value=1.4e-13 Score=118.33 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
.++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..+++.+|.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhcccc
Q 005125 341 GEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~ 361 (713)
|++++|+.+|+++++ ++|.+
T Consensus 99 g~~~~A~~~~~~al~-~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLL-SQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHH-hCcCC
Confidence 999999999999999 88876
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.51 E-value=7.8e-14 Score=129.09 Aligned_cols=130 Identities=11% Similarity=0.098 Sum_probs=115.4
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 492 (713)
+...|++++|+..|++++...|+ ++.+++.+|.+|...|++++|+.+|++++.++|++..++.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------- 82 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ----------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA------- 82 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHH-------
T ss_pred hhhccCHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-------
Confidence 45678999999999999998874 5668999999999999999999999999999999988887
Q ss_pred HHHHHHHHHH-HHHcccH--HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 493 MASARLRGNL-LFKASKY--KEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 493 ~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.+|.+ +...|++ ++|+..|+++++.+|+++.+++++|.+|..+|++++|+..|+++++++|++....
T Consensus 83 -----~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 83 -----ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp -----HHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred -----HHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 68999 8899999 9999999999999999999999999999999999999999999999999876543
No 149
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.50 E-value=1.3e-13 Score=118.42 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
.++.+|.++...|++++|+..|+++++.+|++..+|. .+|.++...|++++|+..|+++++++|+++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~------------~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWR------------SLGLTQAENEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4678999999999999999999999999999999998 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
+++++|.+|..+|++++|+..|+++++++|++..
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999998754
No 150
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=5.2e-11 Score=132.18 Aligned_cols=316 Identities=8% Similarity=-0.047 Sum_probs=222.1
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC--CCHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGR---QIEALVECKEAIRIDP--CYHR 328 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~~~~ 328 (713)
.+|.+...|..+.......++++.+...|++++...|.....|...+......++ ++.+...|++++...| .+..
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 4566777899999999999999999999999999999999999999999999999 9999999999999984 5778
Q ss_pred HHHHHHHHHHHcCCH--------HHHHHHHHHHhhh--h-ccccHHHHHHHHHHHHHH---HHHHHhhcHHHHHHHHHHH
Q 005125 329 AHHRLAMLYFRLGEA--------EKAVSHYKKSSSL--A-NQKDIAKAEALHKHLTKC---NEARELKRWNDLLKETQNV 394 (713)
Q Consensus 329 ~~~~la~~~~~~g~~--------~~A~~~~~~al~~--~-~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~A~~~~~~a 394 (713)
.|..........++. +.....|++|+.. . ++.....+..+..+.... ......++++.+...|+++
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888877666555543 3344788888862 2 454443333332222110 0112334566677777777
Q ss_pred HHcCCCChHHHHHHHHHH-------------HHHccCHHHHH--------------------------------------
Q 005125 395 ISFGADSAPQVYALQAEA-------------LLRLQRHQEAH-------------------------------------- 423 (713)
Q Consensus 395 l~~~p~~~~~~~~~la~~-------------~~~~g~~~~A~-------------------------------------- 423 (713)
+.+-......+|...... -....+|+.|.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 754222222222110000 00111222222
Q ss_pred -----------------------------HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 005125 424 -----------------------------DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAV-KTAQDA 473 (713)
Q Consensus 424 -----------------------------~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~a 473 (713)
..|++++...| ..+.+|+..+..+...|+.++|. ..|++|
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p----------~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC----------FAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 23333333333 35678899999999999999997 999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-----------CC-----------CHHHHH
Q 005125 474 AQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE-----------AY-----------NSVLLC 531 (713)
Q Consensus 474 l~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~-----------~~~~~~ 531 (713)
+...|.+...|. ..+......|++++|...|++++..- |. ...+|.
T Consensus 371 i~~~P~s~~Lwl------------~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 371 QQCIPNSAVLAF------------SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp HHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHH------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 999999987776 57888889999999999999999752 42 345788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHH-------------HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 532 NRAACRSKLGQYEKAVEDCTAALIV-MPSYSKARL-------------EAAIQDYEMLIREIPGNEEVGRALFE 591 (713)
Q Consensus 532 ~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~-------------~~A~~~~~~al~~~p~~~~~~~~l~~ 591 (713)
..+.+..+.|+.+.|...|.+|++. .+.....+. +.|...|+.+++..|+++..+....+
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 8888888999999999999999987 333344333 78999999999999999887655443
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.50 E-value=9.7e-13 Score=115.72 Aligned_cols=106 Identities=24% Similarity=0.406 Sum_probs=101.8
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..+.++..++.+|..++..|++++|+.+|++++..+|.++.+++.+|.++..+|++++|+.+|++++.++|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
|.+|..+|++++|+.+|++++. ++|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~-~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS-LAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-HChh
Confidence 9999999999999999999999 8887
No 152
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.49 E-value=6.5e-14 Score=150.44 Aligned_cols=160 Identities=14% Similarity=0.149 Sum_probs=123.6
Q ss_pred CCCchhHHHHHHHh----hhhcCCCccccccccccccc----hhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHH
Q 005125 202 CPNATVKTVDYLYK----NLQDVPKQRYGESRLGRNGV----MGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNE 268 (713)
Q Consensus 202 ~~~~~~~Ai~~~~k----al~~~P~~~~~~~~~~~~~~----lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~ 268 (713)
.+...+.|+..+.+ ++.++|...+.........+ ......... +.|...++. ..|..+..++.+|..
T Consensus 198 v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~ 277 (457)
T 1kt0_A 198 IPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTV 277 (457)
T ss_dssp CCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHH
Confidence 34567789988888 88888742221111000000 000000111 345555554 567788899999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 269 AYNKARFEDALALYDRAIAINSSK---------------ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
++..|+|++|+.+|+++++++|.+ ..+++++|.+|..+|++++|+.+|+++++++|++..+|+++
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 357 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRR 357 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 999999999999999999999998 68999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+|++++|+.+|+++++ ++|++.
T Consensus 358 g~a~~~~g~~~~A~~~~~~al~-l~P~~~ 385 (457)
T 1kt0_A 358 GEAQLLMNEFESAKGDFEKVLE-VNPQNK 385 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT-TC----
T ss_pred HHHHHHccCHHHHHHHHHHHHH-hCCCCH
Confidence 9999999999999999999999 998873
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.49 E-value=4.1e-13 Score=116.60 Aligned_cols=107 Identities=34% Similarity=0.524 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
.|.++..++.+|..++..|++++|+.+|++++..+|.+..++..+|.++...|++++|+.++++++..+|++..++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 335 MLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
.++...|++++|+.+|++++. ++|.+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~-~~p~~~ 114 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALE-LDPDNE 114 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HSTTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHh-cCccch
Confidence 999999999999999999999 888763
No 154
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.49 E-value=3e-13 Score=136.47 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID---PNNK 481 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~ 481 (713)
++..+|.++...+++++|+.+|++++.+.+..... ...+.++..+|.+|...|++++|+.+|+++++.. +.+.
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV----YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence 44456777777778888888888887654332111 0135578999999999999999999999999642 2332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 005125 482 EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN------SVLLCNRAACRSKLGQ-YEKAVEDCTAAL 554 (713)
Q Consensus 482 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~-~~~A~~~~~~al 554 (713)
... +..+.++|.++..+|+|++|+.++++++++.+.. +.+++++|.+|..+|+ +++|+.+|++|+
T Consensus 193 ~~~--------~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 193 EFD--------VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 222 2345689999999999999999999999886433 7899999999999995 799999999998
Q ss_pred Hh
Q 005125 555 IV 556 (713)
Q Consensus 555 ~~ 556 (713)
.+
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 155
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=4.9e-11 Score=132.40 Aligned_cols=355 Identities=7% Similarity=-0.030 Sum_probs=235.6
Q ss_pred HHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcC---HHHHH
Q 005125 208 KTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKAR---FEDAL 279 (713)
Q Consensus 208 ~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~---~~~A~ 279 (713)
+-+..|++++..+|. ....|. .++... ...+ +.+...++. ..|.....|...+......++ ++.+.
T Consensus 50 d~i~~lE~~l~~np~--d~~~W~---~yi~~~-~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPT--DIFLYV---KLLKHH-VSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CHHHHHHHHHHHCTT--CHHHHH---HHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred HHHHHHHHHHHHCcC--CHHHHH---HHHHHH-HhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 567889999999973 233333 222222 2223 457777777 889999999999999999999 99999
Q ss_pred HHHHHHHHhCC--CCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHh----CCCCHHHHHHHHHHHH-------
Q 005125 280 ALYDRAIAINS--SKATYRSNKSAALIGLGRQ--------IEALVECKEAIRI----DPCYHRAHHRLAMLYF------- 338 (713)
Q Consensus 280 ~~~~~al~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~la~~~~------- 338 (713)
.+|++++...| .++.+|..........++. +.....|++|+.. ++....+|........
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99999999984 5777887777655555543 3344788888864 6767777766665433
Q ss_pred --HcCCHHHHHHHHHHHhhhhccccHHH-HHHHHHH-------------------HHHHHH-------------------
Q 005125 339 --RLGEAEKAVSHYKKSSSLANQKDIAK-AEALHKH-------------------LTKCNE------------------- 377 (713)
Q Consensus 339 --~~g~~~~A~~~~~~al~~~~p~~~~~-~~~~~~~-------------------~~~~~~------------------- 377 (713)
.+++.+.+...|.+++. +....... +..+..+ +..+..
T Consensus 204 ~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 34457788889999987 43222111 0000000 000000
Q ss_pred ----------------------HH-----Hhh---------cHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHH
Q 005125 378 ----------------------AR-----ELK---------RWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQE 421 (713)
Q Consensus 378 ----------------------~~-----~~~---------~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 421 (713)
+. +.. ........|++++...|... .+|...+..+...|+.++
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~-~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP-EIWFNMANYQGEKNTDST 361 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHSCCTT
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHhcCcHHH
Confidence 00 000 12234567999999999874 899999999999999999
Q ss_pred HH-HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHH
Q 005125 422 AH-DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID-----------PNNKEVIKGVKM 489 (713)
Q Consensus 422 A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~~~~ 489 (713)
|. ..|++|+...|. ...++...+......|++++|...|++++..- |.+......+..
T Consensus 362 a~r~il~rAi~~~P~----------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 362 VITKYLKLGQQCIPN----------SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 97 999999988884 45578889999999999999999999999752 432110000000
Q ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHH--
Q 005125 490 AKAMASARLRGNLLFKASKYKEACYAYSEGLEH-EAYNSVLLCNRAACRSKLGQ-YEKAVEDCTAALIVMPSYSKARL-- 565 (713)
Q Consensus 490 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~-- 565 (713)
.-...+...+....+.|+.+.|...|.+|++. .+....+|...|.+....|+ ++.|...|+.+++..|+++..|.
T Consensus 432 -~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y 510 (679)
T 4e6h_A 432 -KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKY 510 (679)
T ss_dssp -HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 00011224556666677777888888888776 33445666666666666544 77888888888887777776653
Q ss_pred ----------HHHHHHHHHHHHhCCC
Q 005125 566 ----------EAAIQDYEMLIREIPG 581 (713)
Q Consensus 566 ----------~~A~~~~~~al~~~p~ 581 (713)
+.|...|++++...|+
T Consensus 511 ~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 511 LDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 6777777777777763
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.49 E-value=2.4e-13 Score=128.67 Aligned_cols=173 Identities=14% Similarity=0.032 Sum_probs=131.0
Q ss_pred HHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcC
Q 005125 269 AYNKARFEDALALYDRAIAINS-SKATYRSNKSAALIGLGRQIEALVECKEAIRI------DPCYHRAHHRLAMLYFRLG 341 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g 341 (713)
++..|++++|+..++.... +| ....++..+|.++...|++++|+.++++++.+ .+....++..+|.+|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4578999999996665544 44 66889999999999999999999999999994 4445788999999999999
Q ss_pred CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHH
Q 005125 342 EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQE 421 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 421 (713)
++++|+.+|++++. +...... + +.....++..+|.++...|++++
T Consensus 81 ~~~~A~~~~~~al~-~~~~~~~-------------------~---------------~~~~~~~~~~lg~~~~~~g~~~~ 125 (203)
T 3gw4_A 81 NWDAARRCFLEERE-LLASLPE-------------------D---------------PLAASANAYEVATVALHFGDLAG 125 (203)
T ss_dssp CHHHHHHHHHHHHH-HHHHSCC-------------------C---------------HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHHHH-HHHHcCc-------------------c---------------HHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999998 4211100 0 00013677888999999999999
Q ss_pred HHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 422 AHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 422 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
|+.++++++.+.+...... ..+.++..+|.++...|++++|+.++++++++.....
T Consensus 126 A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 126 ARQEYEKSLVYAQQADDQV----AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 9999999987644322111 2355678999999999999999999999998754433
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.48 E-value=6e-13 Score=121.09 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAI------------------NSSKATYRSNKSAALIGLGRQIEALVECKEA 319 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 319 (713)
.+..+..+|..++..|+|++|+..|++++.+ +|....+++++|.+|..+|++++|+.+|+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567999999999999999999999999999 7777899999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+.++|+++.+|+.+|.+|..+|++++|+.+|++++. ++|++.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~-l~p~~~ 131 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR-NHPAAA 131 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCGGGH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh-cCCCCH
Confidence 999999999999999999999999999999999999 999986
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.48 E-value=6.7e-13 Score=120.93 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
..+..+|.++...|++++|+.+|++++...|+ .+.++..+|.++...|++++|+.+|++++..+|.+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS----------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 56677788888888888888888888777664 45577778888888888888888888888888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAAC--RSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~ 556 (713)
+. .+|.++...|++++|+.+|+++++++|.+..++..++.+ +...|++++|+..++++..+
T Consensus 84 ~~------------~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 84 YY------------RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HH------------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH------------HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 66 578888888888888888888888888777777444444 77777788877777766554
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.48 E-value=6.8e-14 Score=132.16 Aligned_cols=139 Identities=14% Similarity=0.041 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh------hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL------FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 478 (713)
.+..+|..+...|++++|+.+|++++.+.|...... ........++.++|.+|...|++++|+.+|++++.++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344445555555555555555555554444321000 00000136889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 005125 479 NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAV-EDCTAALI 555 (713)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 555 (713)
++..++. .+|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++. ..|.+.+.
T Consensus 120 ~~~~~~~------------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALY------------KLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHH------------HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998887 69999999999999999999999999999999999999999999988887 55555544
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=3.6e-14 Score=153.09 Aligned_cols=139 Identities=25% Similarity=0.310 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
+.++..+|..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|+++.+++.+|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH--HHHc
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA--LLRL 416 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~--~~~~ 416 (713)
.+|++++|+.+|+++++ ++|++. .++..++.+ +...
T Consensus 86 ~~g~~~eA~~~~~~al~-~~p~~~-----------------------------------------~~~~~l~~~~~~~~~ 123 (477)
T 1wao_1 86 ALGKFRAALRDYETVVK-VKPHDK-----------------------------------------DAKMKYQECNKIVKQ 123 (477)
T ss_dssp HHTCHHHHHHHHHHHHH-HSTTCT-----------------------------------------THHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-hCCCCH-----------------------------------------HHHHHHHHHHHHHHH
Confidence 99999999999999999 888763 455556666 7788
Q ss_pred cCHHHHHHHhh-----------ccccCChhhHHh
Q 005125 417 QRHQEAHDSYN-----------KSPKFCLEYYTK 439 (713)
Q Consensus 417 g~~~~A~~~~~-----------~al~~~~~~~~~ 439 (713)
|++++|+..++ +++.+.|++...
T Consensus 124 g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 124 KAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 99999999998 788877765444
No 161
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=99.47 E-value=2.6e-13 Score=114.59 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=79.9
Q ss_pred chhHHHHHhhcCC---ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 618 SNERFRHFVTSPG---MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 618 ~~~~~~~~l~~~~---~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
+.++|...+.... .+++.|++ |++|+.+.|.|++++++||++.|++||+|+. +..++|+++|||++|++|+.
T Consensus 9 t~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~---~~~~~v~~~PT~~~fk~G~~ 85 (118)
T 3evi_A 9 SGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC---IQHYHDNCLPTIFVYKNGQI 85 (118)
T ss_dssp CGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT---STTCCGGGCSEEEEEETTEE
T ss_pred CHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HHHCCCCCCCEEEEEECCEE
Confidence 4567877665443 67778999 9999999999999999999999999999986 58899999999999999999
Q ss_pred eeeecCC--------CHHHHHHHHHhh
Q 005125 693 VKEIPGH--------QCELLEKSVKLY 711 (713)
Q Consensus 693 ~~~~~g~--------~~~~~~~~~~~~ 711 (713)
++++.|. +.+.|+.+|.++
T Consensus 86 v~~~~G~~~~gg~~~~~~~le~~L~~~ 112 (118)
T 3evi_A 86 EAKFIGIIECGGINLKLEELEWKLAEV 112 (118)
T ss_dssp EEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred EEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence 9999986 489999999875
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.46 E-value=9.8e-13 Score=124.13 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA----------------TYRSNKSAALIGLGRQIEALVECKEAI 320 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al 320 (713)
..+..+..+|..++..|+|++|+.+|++++++.|.++ .++.++|.++..+|++++|+.+|++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999887 899999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 321 RIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 321 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
.++|++..+++.+|.+|..+|++++|+.+|++++. ++|.+.
T Consensus 116 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~ 156 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS-LNPNNL 156 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSTTCH
T ss_pred HhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HCCCcH
Confidence 99999999999999999999999999999999999 888874
No 163
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=99.46 E-value=9.7e-13 Score=113.37 Aligned_cols=109 Identities=23% Similarity=0.362 Sum_probs=97.5
Q ss_pred ccccccccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCc
Q 005125 603 DVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSS 680 (713)
Q Consensus 603 ~~~~~~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~ 680 (713)
++..-.+...+..+.+.++|...+.....+++.|++ |++|+.+.|.|+++++.++++.|+.||+++.+.++..++|.+
T Consensus 11 ~~~~~~~~~mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~ 90 (125)
T 1r26_A 11 GIRMRARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQ 90 (125)
T ss_dssp -CCCSSCCSCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS
T ss_pred ceeeeccccceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCc
Confidence 444445666677787778999988777788888999 999999999999999999999999999999999999999999
Q ss_pred ccEEEEEECCeEeeeecCCCHHHHHHHHHhh
Q 005125 681 IPAFKIYKNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 681 ~Pt~~~~~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+||+++|++|+.+.++.|.+++.|.++|+++
T Consensus 91 ~Pt~~i~~~G~~~~~~~G~~~~~l~~~l~~~ 121 (125)
T 1r26_A 91 LPTFIIARSGKMLGHVIGANPGMLRQKLRDI 121 (125)
T ss_dssp SSEEEEEETTEEEEEEESSCHHHHHHHHHHH
T ss_pred ccEEEEEeCCeEEEEEeCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999876
No 164
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=99.45 E-value=1.2e-12 Score=109.71 Aligned_cols=100 Identities=22% Similarity=0.375 Sum_probs=89.9
Q ss_pred ceeecchhHHHHHh--hcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFV--TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l--~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+.+.++|...+ ...+..++.|++ |++|+.+.|.++++++.++++.|+.+|+++.+.++..++|.++||+++|+
T Consensus 3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 82 (107)
T 1gh2_A 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFR 82 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCCCcccEEEEEE
Confidence 45566778898887 356778888998 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|+.+.++.|.+.++|.++|+++.
T Consensus 83 ~G~~~~~~~G~~~~~l~~~l~~~l 106 (107)
T 1gh2_A 83 NKVRIDQYQGADAVGLEEKIKQHL 106 (107)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCHHHHHHHHHHhc
Confidence 999999999997778999998764
No 165
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=99.45 E-value=1.8e-13 Score=114.24 Aligned_cols=98 Identities=15% Similarity=0.266 Sum_probs=76.6
Q ss_pred eecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 615 FVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
.+.+.++|...+...+..++.|++ |++|+.+.|.++++++.++++.|+.||+++.+.++..++|.++||+++|++|+.
T Consensus 4 ~i~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~ 83 (105)
T 4euy_A 4 TFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKE 83 (105)
T ss_dssp ------CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------CCCCEEEEEETTEE
T ss_pred ccCCHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeE
Confidence 344556677777667788888998 999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCC-CHHHHHHHHHhhh
Q 005125 693 VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+.++.|. +.+.|.++|+++.
T Consensus 84 ~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 84 ILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp EEEEESSCCHHHHHHHHHTTC
T ss_pred EEEEeCCcCHHHHHHHHHHhh
Confidence 9999999 9999999998764
No 166
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=99.45 E-value=1.2e-12 Score=110.01 Aligned_cols=96 Identities=20% Similarity=0.445 Sum_probs=89.9
Q ss_pred ecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 616 VSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 616 ~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
..+.++|...+...+.+++.|++ |++|+.+.|.++++.+.++++.|+.||+++.+.++..++|.++||+++|++|+.+
T Consensus 11 ~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~ 90 (109)
T 3f3q_A 11 FKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEV 90 (109)
T ss_dssp CCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred CCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCccCEEEEEECCEEE
Confidence 45677899888888888888999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCHHHHHHHHHhh
Q 005125 694 KEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~~~~~~~~~~~~~ 711 (713)
.++.|.+++.|.++|+++
T Consensus 91 ~~~~G~~~~~l~~~i~~~ 108 (109)
T 3f3q_A 91 AKVVGANPAAIKQAIAAN 108 (109)
T ss_dssp EEEESSCHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHhh
Confidence 999999999999999875
No 167
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.44 E-value=4.7e-12 Score=108.75 Aligned_cols=107 Identities=21% Similarity=0.387 Sum_probs=99.1
Q ss_pred CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 255 NKLD-PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 255 ~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
+|.. +..++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.++++++..+|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 3444 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|...|++++|+.+|++++. .+|.+.
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~-~~~~~~ 111 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALE-LDPNNA 111 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH-hCCCcH
Confidence 9999999999999999999999 888774
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.43 E-value=1.6e-12 Score=118.20 Aligned_cols=114 Identities=20% Similarity=0.173 Sum_probs=95.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI--------DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYS 517 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 517 (713)
.+..+..+|..++..|++++|+..|++++.+ +|.++.... ........+.++|.++..+|+|++|+..|+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE--LDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHH--HHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH--HHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4668889999999999999999999999998 444332110 001112334489999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 518 EGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 518 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++.
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 99999999999999999999999999999999999999988775
No 169
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-12 Score=113.30 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
..+..+|.++...|++++|+.+|++++...|+ +..+++.+|.++...|++++|+.+|+++++.+|.+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK----------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence 45555555555555555555555555555543 23355555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLG 541 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 541 (713)
+. .+|.++...|++++|+.+|+++++.+|.+..++..++.++..+|
T Consensus 87 ~~------------~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YT------------RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HH------------HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HH------------HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 44 45555555555555555555555555555555555555555544
No 170
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.43 E-value=4.6e-13 Score=117.52 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=89.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccH----------HHHHHHHHHHhccCCCCH
Q 005125 458 IAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKY----------KEACYAYSEGLEHEAYNS 527 (713)
Q Consensus 458 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~ 527 (713)
.+.+.+++|+..|+++++++|+++++|. ++|.++...+++ ++|+..|++||+++|++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~------------n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLT------------RWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 3567899999999999999999999998 689999888775 599999999999999999
Q ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 528 VLLCNRAACRSKLG-----------QYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 528 ~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
.+|+++|.+|..+| ++++|+.+|++|++++|++. .|.+++++.+..++....
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~---------~y~~al~~~~ka~el~~~ 143 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT---------HYLKSLEMTAKAPQLHAE 143 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHhCHhccCc
Confidence 99999999999886 67777777777777777763 344455554444444443
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.42 E-value=8.3e-13 Score=111.21 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC--YHRAHHR 332 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 332 (713)
+|.++..++.+|.+++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++++|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57788889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHhhhhcccc
Q 005125 333 LAMLYFRL-GEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 333 la~~~~~~-g~~~~A~~~~~~al~~~~p~~ 361 (713)
+|.++... |++++|+.++++++. ..|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~-~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL-EHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG-GCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh-cccCC
Confidence 99999999 999999999999999 87764
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.42 E-value=4.7e-12 Score=107.56 Aligned_cols=104 Identities=25% Similarity=0.299 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+..++.+|..++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccH
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
...|++++|+.+|++++. .+|.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~-~~~~~~ 106 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK-HEANNP 106 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT-TCTTCH
T ss_pred HHHhhHHHHHHHHHHHHH-cCCCCH
Confidence 999999999999999999 888874
No 173
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=1.1e-11 Score=122.35 Aligned_cols=202 Identities=9% Similarity=-0.026 Sum_probs=158.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 278 ALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP--CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 278 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
|+..|++.++..+....++..+|.++...|++++|+..+.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 89999999887766777788999999999999999999999999987 8899999999999999999999999999988
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHccCHHHHHHHhhccccC
Q 005125 356 LANQKDIAKAEALHKHLTKCNEARELK--RWNDLLKETQNVISFGADSA-PQVYALQAEALLRLQRHQEAHDSYNKSPKF 432 (713)
Q Consensus 356 ~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (713)
.+|+....-..+...+..+.+....| ++.+|...|+++....|+.. +..+++ +++.+|++++|...++.+++.
T Consensus 165 -~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 -AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp -HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred -cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence 88831111112233333444444455 99999999999988887621 123333 899999999999999988877
Q ss_pred ChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
.|+...+-...+.++.++.++..+...+|+ +|.++++++.+.+|+++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 554211100012467789889889999998 999999999999999998765
No 174
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.42 E-value=3.9e-12 Score=117.55 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=109.3
Q ss_pred CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHH
Q 005125 245 GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAA-LIGLGRQ--IEALVECKE 318 (713)
Q Consensus 245 ~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~A~~~~~~ 318 (713)
++|...+.. ..|.++.+++.+|.++...|++++|+.+|+++++.+|.++.++..+|.+ +...|++ ++|+.+|++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 456666655 6788888999999999999999999999999999999999999999999 8899999 999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 319 AIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 319 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
++.++|++..+++.+|.+|...|++++|+.+|++++. ++|.+.
T Consensus 107 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~ 149 (177)
T 2e2e_A 107 ALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD-LNSPRI 149 (177)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TCCTTS
T ss_pred HHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh-hCCCCc
Confidence 9999999999999999999999999999999999999 999874
No 175
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=99.42 E-value=1.3e-12 Score=111.13 Aligned_cols=97 Identities=26% Similarity=0.463 Sum_probs=89.0
Q ss_pred eecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 615 FVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 615 ~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
...+.++|...+. ....+++.|++ |++|+.+.|.++++.+.++++.|+.||+++.+.++..++|.++||+++|++|
T Consensus 15 ~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 94 (116)
T 3qfa_C 15 QIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKG 94 (116)
T ss_dssp CCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEESSS
T ss_pred CCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCccccEEEEEeCC
Confidence 3456778988887 67788888998 9999999999999999998899999999999999999999999999999999
Q ss_pred eEeeeecCCCHHHHHHHHHhh
Q 005125 691 SRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+.+.++.|.+.+.|.++|+++
T Consensus 95 ~~~~~~~G~~~~~l~~~l~~~ 115 (116)
T 3qfa_C 95 QKVGEFSGANKEKLEATINEL 115 (116)
T ss_dssp SEEEEEESCCHHHHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHh
Confidence 999999999999999999875
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.42 E-value=1.2e-13 Score=148.26 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=120.5
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 005125 271 NKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---------------HRAHHRLAM 335 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 335 (713)
..+++++|+..|+.+++..|..+.++..+|.+++..|+|++|+..|+++++++|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999998 688999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
+|..+|++++|+.+|++++. ++|++. .+|+.+|.+|..
T Consensus 326 ~~~~~g~~~~A~~~~~~al~-~~p~~~-----------------------------------------~a~~~~g~a~~~ 363 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALG-LDSANE-----------------------------------------KGLYRRGEAQLL 363 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HSTTCH-----------------------------------------HHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHh-cCCccH-----------------------------------------HHHHHHHHHHHH
Confidence 99999999999999999999 888773 667777777777
Q ss_pred ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHH
Q 005125 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVK 468 (713)
Q Consensus 416 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 468 (713)
+|++++|+.+|++++++.|++ ..++..++.++..++++++|..
T Consensus 364 ~g~~~~A~~~~~~al~l~P~~----------~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 364 MNEFESAKGDFEKVLEVNPQN----------KAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TTCHHHHHHHHHHHHTTC--------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777753 3366777777777777776654
No 177
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=99.41 E-value=2.9e-12 Score=106.91 Aligned_cols=99 Identities=25% Similarity=0.461 Sum_probs=90.4
Q ss_pred ceeecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+.+.+.|...+. .....++.|++ |++|+.+.|.++++++.++++.|+.+|.++.+.++..++|.++||+++|+
T Consensus 2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 81 (105)
T 3m9j_A 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFK 81 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCCcCcEEEEEE
Confidence 455677788888887 56677888888 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+|+.+.++.|.+.+.|.++|+++
T Consensus 82 ~g~~~~~~~g~~~~~l~~~l~~~ 104 (105)
T 3m9j_A 82 KGQKVGEFSGANKEKLEATINEL 104 (105)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCHHHHHHHHHHh
Confidence 99999999999999999999875
No 178
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.41 E-value=3.2e-12 Score=110.90 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
..+..+|.++...|++++|+.+|++++...|+ .+.++..+|.++...|++++|+.++++++..+|++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA----------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence 45566666666666777777777666665553 34456666667766777777777777777666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 543 (713)
+. .+|.++...|++++|+.+|+++++.+|++..++..+|.++..+|++
T Consensus 83 ~~------------~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 83 YG------------RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HH------------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HH------------HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 55 4666666677777777777777766666666666666666666654
No 179
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.40 E-value=6.1e-12 Score=106.85 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=101.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..++.+|.++...|++++|+..|++++..+|.+..++. .+|.++...|++++|+..|+++++.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYS------------NRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH------------HHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 3568889999999999999999999999999999988887 6999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
++.++.++|.++..+|++++|+..++++++++|++..++.
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999999999999999877665
No 180
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.40 E-value=2.9e-12 Score=112.62 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=98.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 524 (713)
..+..++.+|.++...|++++|+.+|++++..+|++..++. ++|.++...|++++|+..|+++++++|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~al~~~p 74 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT------------NRALCYLKMQQPEQALADCRRALELDG 74 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 46778999999999999999999999999999999998887 799999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 525 YNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 525 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+++.+++++|.++..+|++++|+..|+++++++|+
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999999999999999886
No 181
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=99.40 E-value=1e-12 Score=106.92 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=88.3
Q ss_pred cccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHh----hHHHcCCC-c
Q 005125 608 KFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY----IAKSEGVS-S 680 (713)
Q Consensus 608 ~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~----~~~~~~v~-~ 680 (713)
.|...+..+.+.++|...+...++++++|++ ||+|+++.|.|+++... +++.|++||+++.+. ++..+||. .
T Consensus 3 ~~~~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~h~ 81 (112)
T 3iv4_A 3 YFQGVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVKHE 81 (112)
T ss_dssp CGGGCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCCCC
T ss_pred chhcceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCccC
Confidence 4666788888999999999888888888888 99999999999999986 789999999999976 89999999 5
Q ss_pred ccEEEEEECCeEeee-ecCC-CHHHHHHHH
Q 005125 681 IPAFKIYKNGSRVKE-IPGH-QCELLEKSV 708 (713)
Q Consensus 681 ~Pt~~~~~~g~~~~~-~~g~-~~~~~~~~~ 708 (713)
+|+|++|++|+.+.+ ..+. +.+.|.+.|
T Consensus 82 sPq~il~k~G~~v~~~SH~~I~~~~l~~~~ 111 (112)
T 3iv4_A 82 SPQAFYFVNGEMVWNRDHGDINVSSLAQAE 111 (112)
T ss_dssp SSEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred CCeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence 999999999999977 5566 888887765
No 182
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.40 E-value=1e-11 Score=117.22 Aligned_cols=168 Identities=12% Similarity=0.056 Sum_probs=130.3
Q ss_pred HHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHH
Q 005125 379 RELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYI 458 (713)
Q Consensus 379 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 458 (713)
...|++++|...++... .+|.....++..+|.++...|++++|+.+|++++.+...... ....+.++..+|.+|.
T Consensus 3 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD----HTAEHRALHQVGMVER 77 (203)
T ss_dssp ----CHHHHHHHHHHHH-TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHH
Confidence 45788999988554443 366666789999999999999999999999999885432211 0124668999999999
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC--C----HHH
Q 005125 459 AAGRFEDAVKTAQDAAQI---DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY--N----SVL 529 (713)
Q Consensus 459 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~ 529 (713)
..|++++|+.+|++++.+ .++++... ...+.++|.++...|++++|+.++++++.+.+. + ..+
T Consensus 78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 78 MAGNWDAARRCFLEERELLASLPEDPLAA--------SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCccHHHH--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 999999999999999988 45443111 123447999999999999999999999976432 2 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 530 LCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 530 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+.++|.++..+|++++|+.++++++++...
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999987443
No 183
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.40 E-value=6.5e-12 Score=107.86 Aligned_cols=104 Identities=29% Similarity=0.415 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
+++.+|.++...|++++|+.+|++++...|.+..++. .+|.++...|++++|+..|++++...|.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 78 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY------------NLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH------------HHHHHHHHhCCHHHHHHHHHHHHHhCCccHH
Confidence 4444444444444444444444444444444444433 3444444444555555555444444444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
++..+|.++...|++++|+..++++++.+|++..++
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 114 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 444445444445555555555555444444444433
No 184
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=99.40 E-value=3.9e-12 Score=107.56 Aligned_cols=102 Identities=23% Similarity=0.437 Sum_probs=92.1
Q ss_pred ccceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccE
Q 005125 611 SNLVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPA 683 (713)
Q Consensus 611 ~~i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt 683 (713)
..+..+.+.++|...+.. ....++.|++ |++|+.+.|.++++.+.++ ++.|+.||++..+.++..++|.++||
T Consensus 2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 81 (112)
T 1ep7_A 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT 81 (112)
T ss_dssp CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccE
Confidence 456677777889888765 6788888988 9999999999999999997 79999999999999999999999999
Q ss_pred EEEEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 684 FKIYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 684 ~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+++|++|+.+.++.|.+.+.|.++|+++.
T Consensus 82 ~~~~~~G~~~~~~~G~~~~~l~~~l~~~l 110 (112)
T 1ep7_A 82 FHVYKDGVKADDLVGASQDKLKALVAKHA 110 (112)
T ss_dssp EEEEETTEEEEEEESCCHHHHHHHHHHHH
T ss_pred EEEEECCeEEEEEcCCCHHHHHHHHHHHh
Confidence 99999999999999999999999998764
No 185
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7.5e-12 Score=111.41 Aligned_cols=109 Identities=25% Similarity=0.297 Sum_probs=104.2
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
..+.++..++.+|..++..|++++|+.+|+++++.+|++ ..++..+|.++...|++++|+.+|++++.++|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 456788899999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
+.+|.+|..+|++++|+.+|++++. ++|++..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~ 134 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS-LEPKNKV 134 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-HCSSCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHH
Confidence 9999999999999999999999999 9998853
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.3e-11 Score=131.82 Aligned_cols=214 Identities=10% Similarity=0.032 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKA-----------------TYRSNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
|.+....|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999987643 3688999999999999999999999998
Q ss_pred hCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005125 322 IDPCYH------RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVI 395 (713)
Q Consensus 322 ~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 395 (713)
+.+... .+...++.++...|++++|+.++++++. ..+..............++..+...|+|.+|+..+++++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE-FAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH-HHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 765542 3466788888899999999999999988 544332222234567888999999999999999999988
Q ss_pred HcCC-----CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 396 SFGA-----DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470 (713)
Q Consensus 396 ~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 470 (713)
.... .....++..+|.+|...|++++|..+|++++...+..... ....+.++..+|.++...+++++|..+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 163 REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP---TQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc---hHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6522 2234789999999999999999999999998765432110 0013567888999999999999999999
Q ss_pred HHHHHh
Q 005125 471 QDAAQI 476 (713)
Q Consensus 471 ~~al~~ 476 (713)
.+++..
T Consensus 240 ~~a~~~ 245 (434)
T 4b4t_Q 240 FESFES 245 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.39 E-value=7.7e-12 Score=108.55 Aligned_cols=102 Identities=9% Similarity=0.070 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKA---TYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHRL 333 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 333 (713)
++++.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578999999999999999999999999999988 799999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+|++++|+..|++++. ..|++.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~-~~p~~~ 110 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVAT-QYPGSD 110 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HSTTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-HCCCCh
Confidence 9999999999999999999999 999875
No 188
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=99.38 E-value=4.6e-12 Score=109.06 Aligned_cols=103 Identities=17% Similarity=0.352 Sum_probs=92.1
Q ss_pred cccceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccE
Q 005125 610 GSNLVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPA 683 (713)
Q Consensus 610 g~~i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt 683 (713)
+..+..+.+.++|...+.. ....++.|++ |++|+.+.|.++++.+.++++.|+.||+++.+.++..++|.++||
T Consensus 15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt 94 (124)
T 1xfl_A 15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPT 94 (124)
T ss_dssp CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCCCccCE
Confidence 3456777788888887754 5677777888 999999999999999999999999999999999999999999999
Q ss_pred EEEEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 684 FKIYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 684 ~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+++|++|+.+.++.|.+++.|.++|+++.
T Consensus 95 ~~~~~~G~~~~~~~G~~~~~l~~~l~~~l 123 (124)
T 1xfl_A 95 FMFLKEGKILDKVVGAKKDELQSTIAKHL 123 (124)
T ss_dssp EEEEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred EEEEECCEEEEEEeCCCHHHHHHHHHHhc
Confidence 99999999999999999999999998764
No 189
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=99.38 E-value=5.4e-12 Score=106.64 Aligned_cols=98 Identities=20% Similarity=0.372 Sum_probs=85.5
Q ss_pred eeecchhHHHHHhhc---CCceEEEeec--CchhHHHHHHHHHHHHh--CCCcEEEEEeCCCcHhhHHHcCCCcccEEEE
Q 005125 614 VFVSSNERFRHFVTS---PGMAVVLFCS--KAEHKQVLQLMEQVCKR--FPSVNFLKVEVEDHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~---~~~~vv~f~~--cg~c~~~~~~~~~l~~~--~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~ 686 (713)
..+.+.++|...+.. ....++.|++ |++|+.+.|.++++.+. ++++.|+.||+++.+.++..++|.++||+++
T Consensus 3 ~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 82 (112)
T 3d6i_A 3 IEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFII 82 (112)
T ss_dssp EEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred cccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEEE
Confidence 445556788888765 6678888988 99999999999999988 6789999999999999999999999999999
Q ss_pred EECCeEeeeecCCCHHHHHHHHHhh
Q 005125 687 YKNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 687 ~~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
|++|+.+.++.|.++++|.++|+++
T Consensus 83 ~~~G~~~~~~~G~~~~~l~~~l~~~ 107 (112)
T 3d6i_A 83 IHKGTILKELSGADPKEYVSLLEDC 107 (112)
T ss_dssp EETTEEEEEECSCCHHHHHHHHHHH
T ss_pred EECCEEEEEecCCCHHHHHHHHHHH
Confidence 9999999999999777899999876
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.38 E-value=2.2e-12 Score=113.15 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=86.5
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 270 YNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQ----------IEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 270 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
-+.+.|++|+..|+++++++|+++++|+++|.++..++++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHhhhhccccH
Q 005125 340 LG-----------EAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 340 ~g-----------~~~~A~~~~~~al~~~~p~~~ 362 (713)
+| ++++|+.+|++|++ ++|++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~-l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD-EQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH-HCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH-hCCCCH
Confidence 85 89999999999999 999974
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=5e-12 Score=135.17 Aligned_cols=218 Identities=11% Similarity=0.010 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH-----------------RAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
|.+....|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|+++|.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566778888999999999999999999887642 4688999999999999999999999988
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 356 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
..+....... ...+...++.++...|++++|+.++++++...+.
T Consensus 84 -~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 127 (434)
T 4b4t_Q 84 -YMMQFAKSKT-----------------------------------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR 127 (434)
T ss_dssp -HHHTSCHHHH-----------------------------------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHccchHH-----------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 4443211000 0145666788888889999999999998876554
Q ss_pred hHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Q 005125 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515 (713)
Q Consensus 436 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 515 (713)
... ....+.++..+|.+|...|+|++|+.++++++.......+-.. .+..+..+|.++...|+|++|..+
T Consensus 128 ~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~ 197 (434)
T 4b4t_Q 128 EKR----VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS------LVDVHLLESKVYHKLRNLAKSKAS 197 (434)
T ss_dssp SSC----CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCc----cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh------HHHHHHHHHHHHHHhCcHHHHHHH
Confidence 321 1134678899999999999999999999999875222110000 122344799999999999999999
Q ss_pred HHHHhccCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 516 YSEGLEHEA---YN----SVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 516 ~~~al~~~p---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
|++++...+ .. ...+..+|.++...|++++|..+|.++++.
T Consensus 198 ~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 198 LTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999987643 22 456788899999999999999999999875
No 192
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=99.37 E-value=2.2e-12 Score=108.57 Aligned_cols=96 Identities=18% Similarity=0.295 Sum_probs=86.2
Q ss_pred ecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 616 VSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 616 ~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+.+.++| ..+...+..++.|++ |++|+.+.|.++++...++++.|+.||++..+.++..++|.++||+++|++|+.+
T Consensus 7 ~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~v 85 (110)
T 2l6c_A 7 ITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDGKVA 85 (110)
T ss_dssp CGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESSSEE
T ss_pred cCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCcccCEEEEEECCEEE
Confidence 3445677 666666778888998 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhhh
Q 005125 694 KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~~ 712 (713)
.++.|. ++++|.++|+.+.
T Consensus 86 ~~~~G~~~~~~l~~~~~~~~ 105 (110)
T 2l6c_A 86 KVFSGIMNPRELQALYASIH 105 (110)
T ss_dssp EEEESCCCHHHHHHHHHTC-
T ss_pred EEEcCCCCHHHHHHHHHHHh
Confidence 999998 9999999998873
No 193
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=99.37 E-value=4e-12 Score=107.60 Aligned_cols=99 Identities=25% Similarity=0.438 Sum_probs=89.7
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
+..+.+.+.|...+......++.|++ |++|+.+.|.++++.+.++++.|+.||++..+.++..++|.++||+++|++|
T Consensus 14 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G 93 (114)
T 2oe3_A 14 ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDG 93 (114)
T ss_dssp SCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSBSEEEEEETT
T ss_pred eeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCcccEEEEEeCC
Confidence 44556677888888777788888999 9999999999999999998899999999999999999999999999999999
Q ss_pred eEeeeecCCCHHHHHHHHHhh
Q 005125 691 SRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+.+.++.|..++.|.++|+++
T Consensus 94 ~~~~~~~G~~~~~l~~~l~~~ 114 (114)
T 2oe3_A 94 QLIGKIIGANPTALEKGIKDL 114 (114)
T ss_dssp EEEEEEESSCHHHHHHHHHTC
T ss_pred eEEEEEeCCCHHHHHHHHHhC
Confidence 999999999989999999763
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.36 E-value=9.1e-13 Score=135.50 Aligned_cols=139 Identities=21% Similarity=0.184 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA-----------------TYRSNKSAALIGLGRQIEALVECKE 318 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~ 318 (713)
+..+..++.+|..++..|+|++|+.+|++++...|.+. .+++++|.+|..+|++++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34567899999999999999999999999999999876 4899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC
Q 005125 319 AIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG 398 (713)
Q Consensus 319 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 398 (713)
+++++|++..+|+++|.+|..+|++++|+.+|++++. ++|++.
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-l~p~~~------------------------------------ 298 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK-YAPDDK------------------------------------ 298 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCH------------------------------------
Confidence 9999999999999999999999999999999999999 888873
Q ss_pred CCChHHHHHHHHHH-HHHccCHHHHHHHhhccccCChhh
Q 005125 399 ADSAPQVYALQAEA-LLRLQRHQEAHDSYNKSPKFCLEY 436 (713)
Q Consensus 399 p~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~ 436 (713)
.++..++.+ ....+..+++...|.+++...|++
T Consensus 299 -----~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 299 -----AIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---------------------------------------
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 444444555 334455666777777777766654
No 195
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=99.36 E-value=8.9e-12 Score=103.70 Aligned_cols=97 Identities=21% Similarity=0.385 Sum_probs=87.5
Q ss_pred eecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 615 FVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 615 ~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
.+.+.+.|...+. .....++.|++ |++|+.+.|.++++.+.++++.|+.+|++..+.++..++|.++||+++|++|
T Consensus 3 ~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (104)
T 2vim_A 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDG 82 (104)
T ss_dssp ECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCccccEEEEEeCC
Confidence 4555678888776 45677777888 9999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeecCCCHHHHHHHHHhh
Q 005125 691 SRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+.+.++.|.+.+.|.++|+++
T Consensus 83 ~~~~~~~G~~~~~l~~~l~~~ 103 (104)
T 2vim_A 83 KEVDRFSGANETKLRETITRH 103 (104)
T ss_dssp EEEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCHHHHHHHHHhh
Confidence 999999999999999999875
No 196
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.36 E-value=8.1e-12 Score=108.43 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK---EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.++.+|.++...|++++|+..|++++..+|++. .++. .+|.++...|++++|+..|++++...|+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~------------~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALY------------WLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHH------------HHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 567889999999999999999999999999987 5555 6999999999999999999999999999
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 526 N---SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 526 ~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+ +.+++.+|.++..+|++++|+..|+++++.+|++..+..
T Consensus 72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 9 899999999999999999999999999999998876544
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.36 E-value=5.9e-12 Score=130.79 Aligned_cols=103 Identities=25% Similarity=0.350 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIA----------------INSSKATYRSNKSAALIGLGRQIEALVECKEAIRI 322 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 322 (713)
+..+..+|..++..|+|++|+.+|+++++ .+|.+..++.++|.+|..+|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999 77788899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 323 DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 323 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+|+++.+++.+|.+|..+|++++|+.+|+++++ ++|++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~-l~P~~~ 341 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE-IAPEDK 341 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCH
Confidence 999999999999999999999999999999999 888874
No 198
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.35 E-value=6.1e-12 Score=109.15 Aligned_cols=103 Identities=27% Similarity=0.428 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-------HRA 329 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 329 (713)
..+..++.+|..++..|++++|+.+|+++++.+|.++.++..+|.++...|++++|+.+|++++.+.|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
++.+|.+|...|++++|+.+|++++. ..|+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~ 111 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA-EHRT 111 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH-hCCC
Confidence 99999999999999999999999999 8774
No 199
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=99.35 E-value=8.8e-12 Score=111.83 Aligned_cols=101 Identities=26% Similarity=0.466 Sum_probs=91.9
Q ss_pred cceeecchhHHHHHhhc--CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 612 NLVFVSSNERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
.+..+.+.+.|...+.. .+.+++.|++ |++|+.+.|.++++.+.++++.|+.||+++.+.++..++|.++||+++|
T Consensus 13 ~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 92 (153)
T 2wz9_A 13 AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFF 92 (153)
T ss_dssp CSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred CeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 45666677889888876 6788888999 9999999999999999999999999999999999999999999999999
Q ss_pred ECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 688 KNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 688 ~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
.+|+.+.++.|.+++.|.++|+++.
T Consensus 93 ~~G~~~~~~~G~~~~~l~~~i~~~l 117 (153)
T 2wz9_A 93 KNSQKIDRLDGAHAPELTKKVQRHA 117 (153)
T ss_dssp ETTEEEEEEESSCHHHHHHHHHHHS
T ss_pred ECCEEEEEEeCCCHHHHHHHHHHHh
Confidence 9999999999998899999998763
No 200
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=99.34 E-value=8.6e-13 Score=115.81 Aligned_cols=93 Identities=16% Similarity=0.281 Sum_probs=70.0
Q ss_pred hHHHHHhhcCCceEEEeec----CchhHHHHHHHHHHHHhCCCcE--EEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 620 ERFRHFVTSPGMAVVLFCS----KAEHKQVLQLMEQVCKRFPSVN--FLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~----cg~c~~~~~~~~~l~~~~p~~~--~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
++|...+...+..+++|++ |++|+.+.|.|++++++++.+. |++||+|+.+.++..|+|.++||+++|++|+.+
T Consensus 25 ~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~fk~G~~v 104 (142)
T 2es7_A 25 STVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLR 104 (142)
T ss_dssp C--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC---
T ss_pred ccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcCCCcCCeEEEEeCCEEE
Confidence 5788777777777777764 8999999999999999987788 999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhhh
Q 005125 694 KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~~ 712 (713)
+++.|. +.+.|.++|+++.
T Consensus 105 ~~~~G~~~~~~l~~~i~~~l 124 (142)
T 2es7_A 105 GALSGIHPWAELLTLMRSIV 124 (142)
T ss_dssp -CEESCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHh
Confidence 999999 8999999998763
No 201
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=99.34 E-value=8.2e-12 Score=107.07 Aligned_cols=106 Identities=22% Similarity=0.417 Sum_probs=96.0
Q ss_pred ccccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCCcHhhHHHcCCCccc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVEDHPYIAKSEGVSSIP 682 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~~~~~~~~~~v~~~P 682 (713)
+..+..+..+.+.++|...+......++.|++ |++|+.+.|.++++.+.+++ +.|+.||++..+.++..++|.++|
T Consensus 11 ~~~~~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~P 90 (121)
T 2j23_A 11 LVPRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMP 90 (121)
T ss_dssp CCCCCCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSS
T ss_pred ccCCcceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCccc
Confidence 45566778888889999988777788888888 99999999999999998865 999999999999999999999999
Q ss_pred EEEEEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 683 AFKIYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
|+++|++|+.+.++.|.+++.|.++|+++.
T Consensus 91 t~~~~~~G~~~~~~~G~~~~~l~~~l~~~l 120 (121)
T 2j23_A 91 TFVFFKNGQKIDTVVGADPSKLQAAITQHS 120 (121)
T ss_dssp EEEEEETTEEEEEEESSCHHHHHHHHHHHT
T ss_pred EEEEEECCeEEeeEcCCCHHHHHHHHHHhh
Confidence 999999999999999999999999998764
No 202
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=99.34 E-value=1.2e-11 Score=104.32 Aligned_cols=95 Identities=16% Similarity=0.323 Sum_probs=87.0
Q ss_pred chhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 618 SNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 618 ~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+.++|...+ ......++.|++ |++|+.+.|.++++++.++ .+.|+.||++..+.++..++|.++||+++|++|+.+
T Consensus 10 ~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 89 (111)
T 3gnj_A 10 DTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYK 89 (111)
T ss_dssp CHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEEECCEEE
Confidence 567888877 567788888998 9999999999999999997 499999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhhh
Q 005125 694 KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~~ 712 (713)
.++.|. +.+.|.++|+++.
T Consensus 90 ~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 90 GKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEESSCCHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHh
Confidence 999999 9999999998763
No 203
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.34 E-value=8.4e-13 Score=112.71 Aligned_cols=105 Identities=19% Similarity=0.128 Sum_probs=89.7
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005125 459 AAGRFEDAVKTAQDAAQI---DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535 (713)
Q Consensus 459 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 535 (713)
.+|++++|+.+|++++++ +|++..++. ++|.++...|++++|+.+|+++++.+|+++.+++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~------------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYL------------GLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 468999999999999999 466666665 79999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHH
Q 005125 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL-EAAIQDYEML 575 (713)
Q Consensus 536 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~~A~~~~~~a 575 (713)
++..+|++++|+..|+++++..|+++.... ..|+..|.+.
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~ 110 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADK 110 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987654 6666655543
No 204
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=99.34 E-value=1.2e-11 Score=104.41 Aligned_cols=98 Identities=27% Similarity=0.541 Sum_probs=89.7
Q ss_pred eecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 615 FVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
...+..+|...+......++.|++ |++|+.+.|.++++.+.++++.|+.||++..+.++..++|.++||+++|++|+.
T Consensus 12 ~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~ 91 (112)
T 1syr_A 12 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSS 91 (112)
T ss_dssp EECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEE
T ss_pred EECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCcccEEEEEECCcE
Confidence 345667898888877788888999 999999999999999999899999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHHHHHhhh
Q 005125 693 VKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 693 ~~~~~g~~~~~~~~~~~~~~ 712 (713)
+.++.|.+.+.|.++|+++.
T Consensus 92 ~~~~~G~~~~~l~~~l~~~l 111 (112)
T 1syr_A 92 VDTLLGANDSALKQLIEKYA 111 (112)
T ss_dssp EEEEESCCHHHHHHHHHTTC
T ss_pred EEEEeCCCHHHHHHHHHHhh
Confidence 99999999999999998764
No 205
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=99.33 E-value=1.6e-11 Score=104.85 Aligned_cols=101 Identities=18% Similarity=0.405 Sum_probs=90.9
Q ss_pred cceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 612 NLVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
.+..+.+.++|...+.. ....++.|++ |++|+.+.|.++++.+.++++.|+.||++..+.++..++|.++||++
T Consensus 7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 86 (118)
T 2vm1_A 7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFL 86 (118)
T ss_dssp CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSBSEEE
T ss_pred ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCcCcEEE
Confidence 45666777888887754 6678888888 99999999999999999999999999999999999999999999999
Q ss_pred EEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 686 IYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 686 ~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|++|+.+.++.|.+.+.|.++|+++.
T Consensus 87 ~~~~g~~~~~~~g~~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 87 FIKDGEKVDSVVGGRKDDIHTKIVALM 113 (118)
T ss_dssp EEETTEEEEEEESCCHHHHHHHHHHHH
T ss_pred EEeCCeEEEEecCCCHHHHHHHHHHHh
Confidence 999999999999999999999998763
No 206
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.33 E-value=5e-12 Score=106.32 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=98.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+.+++.+|.++...|++++|+.+|+++++.+|.+..++. .+|.++...|++++|+.+|+++++..|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWL------------MKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4557788999999999999999999999999999988887 6999999999999999999999999999
Q ss_pred --CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCh
Q 005125 526 --NSVLLCNRAACRSKL-GQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 526 --~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 561 (713)
+..++.++|.++..+ |++++|++++++++...|.++
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999999999999 999999999999999999764
No 207
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.7e-11 Score=109.13 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=100.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN---KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
..+..++.+|..+...|++++|+.+|+++++.+|++ ..++. .+|.++...|++++|+..|+++++
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHR------------NRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHH------------HHHHHHHHHccHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999987 45554 799999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 522 HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 522 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+|+++.+++++|.++..+|++++|+.+|+++++++|++..++.
T Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 94 KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 99999999999999999999999999999999999998876553
No 208
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=99.32 E-value=1.2e-11 Score=110.10 Aligned_cols=99 Identities=13% Similarity=0.211 Sum_probs=88.2
Q ss_pred ceeecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 613 LVFVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 613 i~~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+.+.+.|...+. ....+++.|++ |++|+.+.|.++++++.+++ +.|+.||+|+.+.++..++|.++||+++|
T Consensus 5 l~~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 84 (149)
T 3gix_A 5 LPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFF 84 (149)
T ss_dssp CCEECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred eeecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEE
Confidence 445567788888774 36677888999 99999999999999999976 99999999999999999999999999999
Q ss_pred ECCeEe---------eeecC-C-CHHHHHHHHHhh
Q 005125 688 KNGSRV---------KEIPG-H-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~~~---------~~~~g-~-~~~~~~~~~~~~ 711 (713)
++|+.+ .++.| . +.++|.++|++.
T Consensus 85 ~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~ 119 (149)
T 3gix_A 85 FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119 (149)
T ss_dssp ETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred ECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence 999999 99999 6 999999999865
No 209
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=99.31 E-value=1.8e-11 Score=104.30 Aligned_cols=98 Identities=21% Similarity=0.420 Sum_probs=88.4
Q ss_pred ceeecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+.+.++|...+. .....++.|++ |++|+.+.|.++++.+.+ ++.|+.||++..+.++..++|.++||+++|+
T Consensus 15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 93 (117)
T 2xc2_A 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIK 93 (117)
T ss_dssp EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEEEEECCccHHHHHHcCCCccceEEEEe
Confidence 556666678888776 56677888888 999999999999999988 8999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+|+.+.++.|.+++.|.++|+++
T Consensus 94 ~G~~~~~~~G~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 94 NGEKVGDVVGASIAKVEDMIKKF 116 (117)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCHHHHHHHHHHh
Confidence 99999999999999999999875
No 210
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.31 E-value=2e-12 Score=132.87 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
+++++|.+|..+|++++|+.+|+++++++|++..++. ++|.++..+|++++|+.+|+++++++|++..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALF------------RRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 7889999999999999999999999999999998887 7999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 529 LLCNRAAC-RSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 529 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
++.+++.+ ....+..+++...|.+++...|++..
T Consensus 300 a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 300 IRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 99999988 45567788888999999998887653
No 211
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=99.31 E-value=1.3e-11 Score=104.46 Aligned_cols=101 Identities=23% Similarity=0.400 Sum_probs=90.3
Q ss_pred cceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 612 NLVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
.+..+.+.++|...+.. ....++.|++ |++|+.+.|.++++.+.++++.|+.+|++..+.++..++|.++||++
T Consensus 5 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~ 84 (113)
T 1ti3_A 5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFI 84 (113)
T ss_dssp CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTEEE
T ss_pred ceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCCcccEEE
Confidence 45667777888887764 5567777888 99999999999999999999999999999999999999999999999
Q ss_pred EEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 686 IYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 686 ~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|++|+.+.++.|.+++.|.++|+++.
T Consensus 85 ~~~~G~~~~~~~g~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 85 FLKDGKLVDKTVGADKDGLPTLVAKHA 111 (113)
T ss_dssp EEETTEEEEEEECCCTTHHHHHHHHHH
T ss_pred EEeCCEEEEEEecCCHHHHHHHHHHhh
Confidence 999999999999999999999998763
No 212
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=99.31 E-value=2.5e-11 Score=101.37 Aligned_cols=98 Identities=28% Similarity=0.381 Sum_probs=87.5
Q ss_pred eeecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 614 VFVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 614 ~~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
..+.+.+.|...+. .....++.|++ |++|+.+.|.++++.+.+ +++.++.+|++..+.++..++|.++||+++|+
T Consensus 3 ~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 82 (106)
T 1xwb_A 3 YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLK 82 (106)
T ss_dssp EECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEEc
Confidence 44555578888776 56677778888 999999999999999998 78999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+|+.+.++.|.+++.|.++|+++
T Consensus 83 ~G~~~~~~~g~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 83 NGVKVEEFAGANAKRLEDVIKAN 105 (106)
T ss_dssp TTEEEEEEESCCHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCHHHHHHHHHHh
Confidence 99999999999999999999875
No 213
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.31 E-value=3.8e-13 Score=145.07 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
..+..+|.++...|++++|+.+|++++++.|+ .+.++.++|.+|..+|++++|+.+|+++++++|++..+
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 76 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPS----------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 76 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence 45566788899999999999999999999885 56689999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH----------
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAAC--RSKLGQYEKAVEDCT---------- 551 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~---------- 551 (713)
+. ++|.++..+|++++|+..|+++++++|++..++.+++.+ +...|++++|++.++
T Consensus 77 ~~------------~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 77 YY------------RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp HH------------HHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCT
T ss_pred HH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhh
Confidence 87 799999999999999999999999999999999999998 899999999999999
Q ss_pred -HHHHhCCCChHHHH
Q 005125 552 -AALIVMPSYSKARL 565 (713)
Q Consensus 552 -~al~~~p~~~~a~~ 565 (713)
++++++|++..+++
T Consensus 145 ~~al~~~~~~~~~~~ 159 (477)
T 1wao_1 145 IESMTIEDEYSGPKL 159 (477)
T ss_dssp TSSCCCCTTCCSCCC
T ss_pred hhhcccccccccccc
Confidence 88888887654433
No 214
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=99.30 E-value=1.8e-11 Score=103.25 Aligned_cols=94 Identities=23% Similarity=0.391 Sum_probs=84.6
Q ss_pred hhHHHHHhhc--CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-CcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 619 NERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE-DHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 619 ~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d-~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
.++|...+.. ....++.|++ |++|+.+.|.++++.+.++++.|+.||++ ..+.++..++|.++||+++|++|+.+
T Consensus 12 ~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 91 (111)
T 2pu9_C 12 KDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVV 91 (111)
T ss_dssp TTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSBSSEEEEESSSSEE
T ss_pred hHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcEE
Confidence 3577777763 5677778888 99999999999999999989999999998 78999999999999999999999999
Q ss_pred eeecCCCHHHHHHHHHhhh
Q 005125 694 KEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~~~~~~~~~~~~~~ 712 (713)
.++.|.+.+.|.++|+++.
T Consensus 92 ~~~~G~~~~~l~~~l~~~~ 110 (111)
T 2pu9_C 92 GEVTGAKYDKLLEAIQAAR 110 (111)
T ss_dssp EEEESSCHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHhh
Confidence 9999999999999998875
No 215
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.30 E-value=2e-11 Score=110.16 Aligned_cols=140 Identities=20% Similarity=0.126 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK------ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------ 326 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 326 (713)
+.++..+|..++..|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3578999999999999999999999999886532 2488899999999999999999999999875442
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY 406 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 406 (713)
..++..+|.++...|++++|+.++++++. +.+........ ..++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~-----------------------------------~~~~ 132 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA-IAQELKDRIGE-----------------------------------GRAC 132 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHH-----------------------------------HHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHccchHhH-----------------------------------HHHH
Confidence 66889999999999999999999999988 43322111111 2566
Q ss_pred HHHHHHHHHccCHHHHHHHhhccccCCh
Q 005125 407 ALQAEALLRLQRHQEAHDSYNKSPKFCL 434 (713)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 434 (713)
..+|.++...|++++|+.++++++.+..
T Consensus 133 ~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 133 WSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6777888888888888888877766543
No 216
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.29 E-value=9.9e-12 Score=112.25 Aligned_cols=147 Identities=14% Similarity=0.074 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005125 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE 482 (713)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 482 (713)
..++..+|.++...|++++|+.++++++.+.+...... ..+.++..+|.++...|++++|+.+|++++.+.+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA----AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 36788899999999999999999999998776532211 23568899999999999999999999999987554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 483 VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA------YNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 483 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
... ....+.++|.++...|++++|+.++++++++.+ ....++..+|.++..+|++++|+.++++++++
T Consensus 85 ~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 85 RAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 111 123445899999999999999999999998743 22568999999999999999999999999987
Q ss_pred CCC
Q 005125 557 MPS 559 (713)
Q Consensus 557 ~p~ 559 (713)
...
T Consensus 159 ~~~ 161 (164)
T 3ro3_A 159 SRE 161 (164)
T ss_dssp HTT
T ss_pred HHH
Confidence 544
No 217
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=99.29 E-value=2.8e-11 Score=106.69 Aligned_cols=102 Identities=19% Similarity=0.407 Sum_probs=91.5
Q ss_pred cccceeecchhHHHHHhh----cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccE
Q 005125 610 GSNLVFVSSNERFRHFVT----SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPA 683 (713)
Q Consensus 610 g~~i~~~~~~~~~~~~l~----~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt 683 (713)
+..+..+.+.++|...+. ....+++.|++ |++|+.+.|.++++.+.++++.|+.||+++.+.++..++|.++||
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt 102 (139)
T 3d22_A 23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPT 102 (139)
T ss_dssp CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCEESE
T ss_pred CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCCcccE
Confidence 446677777788888763 35678888988 999999999999999999999999999999999999999999999
Q ss_pred EEEEECCeEeeeecCCCHHHHHHHHHhh
Q 005125 684 FKIYKNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 684 ~~~~~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+++|++|+.+.++.|.+.+.|.++|+++
T Consensus 103 ~~~~~~G~~~~~~~G~~~~~l~~~l~~~ 130 (139)
T 3d22_A 103 FFFLRDGQQVDKLVGANKPELHKKITAI 130 (139)
T ss_dssp EEEEETTEEEEEEESCCHHHHHHHHHHH
T ss_pred EEEEcCCeEEEEEeCCCHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 218
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.29 E-value=2.6e-11 Score=101.77 Aligned_cols=95 Identities=22% Similarity=0.354 Sum_probs=87.5
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+.+.|...+......++.|++ |++|+.+.|.++++.+.++ .+.|+.+|++..+.++..++|.++||+++|++|+.+.
T Consensus 10 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 89 (109)
T 3tco_A 10 TEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLVD 89 (109)
T ss_dssp CTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred cHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEEcCCcEEE
Confidence 456788888777888888999 9999999999999999986 6999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.|.++|+++.
T Consensus 90 ~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 90 SLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEESCCCHHHHHHHHHHHC
T ss_pred eeeccCCHHHHHHHHHHHh
Confidence 99999 9999999998864
No 219
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=99.29 E-value=4e-11 Score=103.02 Aligned_cols=101 Identities=25% Similarity=0.386 Sum_probs=89.2
Q ss_pred cceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 612 NLVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
.+..+.+.++|...+.. ....++.|++ |++|+.+.|.++++.+.++++.|+.||+++.+.++..++|.++||++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 92 (122)
T 2vlu_A 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFL 92 (122)
T ss_dssp CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCCCcccEEE
Confidence 34455667788877654 6677888888 99999999999999999988999999999999999999999999999
Q ss_pred EEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 686 IYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 686 ~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|++|+.+.++.|...+.|.++|+++.
T Consensus 93 ~~~~G~~~~~~~G~~~~~l~~~l~~~l 119 (122)
T 2vlu_A 93 FMKEGDVKDRVVGAIKEELTAKVGLHA 119 (122)
T ss_dssp EEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred EEeCCEEEEEEeCcCHHHHHHHHHHHh
Confidence 999999999999998899999998763
No 220
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=99.28 E-value=3.5e-11 Score=102.51 Aligned_cols=100 Identities=22% Similarity=0.400 Sum_probs=87.6
Q ss_pred ceeec-chhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVS-SNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~-~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+. +...|...+ .....+++.|++ |++|+.+.|.++++++.++++.|+.||+++.+.++..++|.++||+++|+
T Consensus 5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 84 (118)
T 2f51_A 5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVK 84 (118)
T ss_dssp SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCCCCCEEEEEe
Confidence 44444 567787544 456677888888 99999999999999999988999999999999999999999999999999
Q ss_pred C----CeEeeeecCCCHHHHHHHHHhhh
Q 005125 689 N----GSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 689 ~----g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+ |+.+.++.|..+++|+++|+++.
T Consensus 85 ~~~~~G~~~~~~~G~~~~~l~~~~~~~~ 112 (118)
T 2f51_A 85 KEGNEIKTLDQFVGADVSRIKADIEKFK 112 (118)
T ss_dssp EETTEEEEEEEEESCCHHHHHHHHHHHC
T ss_pred CCCCcceEEEeecCCCHHHHHHHHHHhh
Confidence 8 99999999998889999998863
No 221
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.28 E-value=7.2e-11 Score=102.24 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=95.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..++.+|.++...|++++|+.+|++++..+|.+..++. .+|.++...|++++|+.+|++++...|.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIT------------NQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH------------HHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 3567899999999999999999999999999999988877 6999999999999999999999999887
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 526 N-------SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 526 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+ +.+++++|.++..+|++++|+.+|++++++.|+
T Consensus 71 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 7 899999999999999999999999999999884
No 222
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=99.27 E-value=2.8e-11 Score=108.55 Aligned_cols=95 Identities=17% Similarity=0.246 Sum_probs=86.3
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+...|...+.....+++.|++ |++|+.+.|.|+++++.++ .+.|+.||+++.+.++..++|.++||+++|++|+.+.
T Consensus 53 ~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~ 132 (155)
T 2ppt_A 53 DPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELA 132 (155)
T ss_dssp CHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEEEeCCeEEE
Confidence 356788877566788888999 9999999999999999875 7999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.|.+||+++.
T Consensus 133 ~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 133 RAAGARPASELVGFVRGKL 151 (155)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHh
Confidence 99999 9999999998763
No 223
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=99.27 E-value=3.9e-11 Score=103.44 Aligned_cols=94 Identities=23% Similarity=0.385 Sum_probs=84.4
Q ss_pred hhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-CcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 619 NERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE-DHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 619 ~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d-~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
.++|...+. .....++.|++ |++|+.+.|.++++.+.++++.++.||++ +.+.++..++|.++||+++|++|+.+
T Consensus 25 ~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 104 (124)
T 1faa_A 25 KDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVV 104 (124)
T ss_dssp TTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTEEE
T ss_pred chhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcEE
Confidence 456776665 45677888888 99999999999999999999999999998 68999999999999999999999999
Q ss_pred eeecCCCHHHHHHHHHhhh
Q 005125 694 KEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~~~~~~~~~~~~~~ 712 (713)
.++.|.+.++|.++|+++.
T Consensus 105 ~~~~G~~~~~l~~~i~~~~ 123 (124)
T 1faa_A 105 GEVTGAKYDKLLEAIQAAR 123 (124)
T ss_dssp EEEESSCHHHHHHHHHHHT
T ss_pred EEEcCCCHHHHHHHHHHhh
Confidence 9999999999999998865
No 224
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.27 E-value=3e-11 Score=125.50 Aligned_cols=134 Identities=12% Similarity=0.112 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHH------hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYT------KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
..+..+|..+...|++++|+.+|++++++.+.... ........+.++.++|.+|..+|++++|+.+|+++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45566677777777777777777777764332100 000001346688999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED 549 (713)
Q Consensus 478 p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 549 (713)
|++..++. .+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++...
T Consensus 304 p~~~~a~~------------~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PSNTKALY------------RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887 6999999999999999999999999999999999999999999988887653
No 225
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=99.27 E-value=3.4e-11 Score=100.51 Aligned_cols=93 Identities=24% Similarity=0.433 Sum_probs=84.7
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+.++|...+ ..+..++.|++ |++|+.+.|.++++.+.+++ +.++.||++..+.++..++|.++||+++|++|+.+.
T Consensus 9 ~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 87 (106)
T 3die_A 9 TDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVD 87 (106)
T ss_dssp CTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEEE
T ss_pred CHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEEeCCeEEE
Confidence 456777777 66778888888 99999999999999999965 999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|+++
T Consensus 88 ~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 88 KVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp EEESCCCHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHHh
Confidence 99999 999999999875
No 226
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.26 E-value=9.3e-12 Score=106.13 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=83.1
Q ss_pred HhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 271 NKARFEDALALYDRAIAI---NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAV 347 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 347 (713)
..|++++|+.+|+++++. +|++..+++.+|.+|..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccH
Q 005125 348 SHYKKSSSLANQKDI 362 (713)
Q Consensus 348 ~~~~~al~~~~p~~~ 362 (713)
.+|++++. ..|++.
T Consensus 82 ~~~~~al~-~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIA-ETSDDE 95 (117)
T ss_dssp HHHHHHHH-HHCCCH
T ss_pred HHHHHHHH-hCCCcH
Confidence 99999999 888875
No 227
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=99.26 E-value=4.9e-11 Score=99.10 Aligned_cols=94 Identities=31% Similarity=0.482 Sum_probs=85.5
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeee
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEI 696 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 696 (713)
.+.|...+......++.|++ |++|+.+.|.++++.+.++++.++.+|++..+.++..++|.++||+++|++|+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 85 (104)
T 2e0q_A 6 SKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVDEI 85 (104)
T ss_dssp TTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEEEEE
T ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCccccCEEEEEECCeEhhhc
Confidence 45677777667778888888 9999999999999999998899999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHHhhh
Q 005125 697 PGH-QCELLEKSVKLYS 712 (713)
Q Consensus 697 ~g~-~~~~~~~~~~~~~ 712 (713)
.|. +.+.|.++|+++.
T Consensus 86 ~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 86 IGAVPREEIEIRIKNLL 102 (104)
T ss_dssp ESCCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 999 8999999998764
No 228
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=99.25 E-value=4.6e-11 Score=99.53 Aligned_cols=93 Identities=23% Similarity=0.379 Sum_probs=83.6
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeee
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEI 696 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 696 (713)
+.|...+......++.|++ |++|+.+.|.++++.+.++ .+.++.+|+++.+.++..++|.++||+++|++|+.+.++
T Consensus 8 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~ 87 (105)
T 1nsw_A 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQL 87 (105)
T ss_dssp TTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred HhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeCCeEEEEE
Confidence 4677666667788888988 9999999999999999986 489999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHHhhh
Q 005125 697 PGH-QCELLEKSVKLYS 712 (713)
Q Consensus 697 ~g~-~~~~~~~~~~~~~ 712 (713)
.|. +.+.|.++|+++.
T Consensus 88 ~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 88 IGYQPKEQLEAQLADVL 104 (105)
T ss_dssp ESCCCHHHHHHHTTTTT
T ss_pred ecCCCHHHHHHHHHHHh
Confidence 999 8899999998754
No 229
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=99.25 E-value=3.5e-11 Score=101.51 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=83.9
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeee
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKE 695 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 695 (713)
.++|...+ .....++.|++ |++|+.+.|.++++.+.++ ++.|+.||++..+.++..++|.++||+++|++|+.+.+
T Consensus 8 ~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 86 (112)
T 2voc_A 8 DQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVET 86 (112)
T ss_dssp TTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEETTEEEEE
T ss_pred HHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeCCEEEEE
Confidence 45677777 66677788888 9999999999999998884 69999999999999999999999999999999999999
Q ss_pred ecCC-CHHHHHHHHHhhh
Q 005125 696 IPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~~ 712 (713)
+.|. +.+.|.++|+++.
T Consensus 87 ~~G~~~~~~l~~~l~~~~ 104 (112)
T 2voc_A 87 SVGFKPKEALQELVNKHL 104 (112)
T ss_dssp EESCCCHHHHHHHHHTTS
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 9999 9999999998763
No 230
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=99.25 E-value=5.4e-11 Score=100.24 Aligned_cols=93 Identities=18% Similarity=0.335 Sum_probs=84.3
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+.+.|...+. .+..++.|++ |++|+.+.|.++++.+.+ +.+.++.+|++..+.++..++|.++||+++|++|+
T Consensus 11 ~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 89 (111)
T 3uvt_A 11 TENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGK 89 (111)
T ss_dssp CTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred ChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEEeCCc
Confidence 4567777776 6677888888 999999999999999886 47999999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.+.++.|. +.+.|.++|++.
T Consensus 90 ~~~~~~g~~~~~~l~~~l~~~ 110 (111)
T 3uvt_A 90 KVSEHSGGRDLDSLHRFVLSQ 110 (111)
T ss_dssp EEEEECSCCSHHHHHHHHHHH
T ss_pred EEEeccCCcCHHHHHHHHHhc
Confidence 99999999 999999999875
No 231
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=99.23 E-value=9.9e-11 Score=99.94 Aligned_cols=99 Identities=25% Similarity=0.280 Sum_probs=86.6
Q ss_pred eeecchhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEEC
Q 005125 614 VFVSSNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 614 ~~~~~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~ 689 (713)
....+.++|...+ ......++.|++ |++|+.+.|.++++.+.+ +++.|+.||++..+.++..++|.++||+++|++
T Consensus 15 ~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 94 (119)
T 1w4v_A 15 FNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKN 94 (119)
T ss_dssp EECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEEEET
T ss_pred EEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEEEeC
Confidence 3345667787765 445577777888 999999999999999888 579999999999999999999999999999999
Q ss_pred CeEeeeecCC-CHHHHHHHHHhhh
Q 005125 690 GSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 690 g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
|+.+.++.|. +.+.|.++|+++.
T Consensus 95 G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 95 GDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp TEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHh
Confidence 9999999999 9999999998764
No 232
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=99.23 E-value=3.1e-11 Score=105.69 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=86.2
Q ss_pred cceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC---------CCcHhhHHHcCCCc
Q 005125 612 NLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV---------EDHPYIAKSEGVSS 680 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~---------d~~~~~~~~~~v~~ 680 (713)
.+..+ +.++|...+.. .+++.|++ |++|+.+.|.++++.+.++ +.|+.||+ +..+.++..++|.+
T Consensus 17 ~v~~l-~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~ 92 (135)
T 3emx_A 17 RLIYI-TPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGVEG 92 (135)
T ss_dssp EEEEC-CHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTCCS
T ss_pred ceeec-CHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCCce
Confidence 33444 56788888766 88888998 9999999999999999987 99999999 88999999999999
Q ss_pred ccEEEEEECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 681 IPAFKIYKNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 681 ~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+||+++|++|+.+.++.|. +.+.+.++|+++.
T Consensus 93 ~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~ 125 (135)
T 3emx_A 93 TPTLVFYKEGRIVDKLVGATPWSLKVEKAREIY 125 (135)
T ss_dssp SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred eCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999 8999999998763
No 233
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=99.23 E-value=6.2e-11 Score=104.50 Aligned_cols=94 Identities=24% Similarity=0.381 Sum_probs=84.3
Q ss_pred chhHHH-HHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 618 SNERFR-HFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 618 ~~~~~~-~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+...|. ..+.....+++.|++ |++|+.+.|.++++++.+++ +.|+.||++..+.++..++|.++||+++|++|+.+
T Consensus 12 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~ 91 (140)
T 3hz4_A 12 EDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPV 91 (140)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEEEETTEEE
T ss_pred chHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEEEeCCcEE
Confidence 456677 455566778888998 99999999999999998865 99999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhh
Q 005125 694 KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~ 711 (713)
.++.|. +.+.|.++|+++
T Consensus 92 ~~~~G~~~~~~l~~~l~~~ 110 (140)
T 3hz4_A 92 WEQVGQIYPSILKNAVRDM 110 (140)
T ss_dssp EEEESSCCHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHH
Confidence 999999 899999999875
No 234
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=99.22 E-value=1.2e-10 Score=97.54 Aligned_cols=94 Identities=18% Similarity=0.355 Sum_probs=83.0
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.++|...+ ...+..++.|++ |++|+.+.|.++++.+.++ .+.++.||++..+.++..++|.++||+++|++|+.+.
T Consensus 9 ~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 88 (108)
T 2trx_A 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 88 (108)
T ss_dssp TTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEEeCCEEEE
Confidence 45676544 445667777888 9999999999999999985 6999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.|.++|++..
T Consensus 89 ~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 89 TKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHhh
Confidence 99999 9999999998764
No 235
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=99.22 E-value=8.9e-11 Score=104.67 Aligned_cols=94 Identities=17% Similarity=0.296 Sum_probs=86.4
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+.+.|...+.....+++.|++ |++|+.+.|.++++.+.+ +.+.|+.||++..+.++..++|.++||+++|++|+.+.
T Consensus 44 ~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 123 (148)
T 3p2a_A 44 TAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMID 123 (148)
T ss_dssp CTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred CHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEEEECCeEEE
Confidence 446788877777788888999 999999999999999998 67999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|+++
T Consensus 124 ~~~G~~~~~~l~~~l~~~ 141 (148)
T 3p2a_A 124 MLNGAVPKAPFDNWLDEQ 141 (148)
T ss_dssp EESSCCCHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHH
Confidence 99999 999999999876
No 236
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=99.22 E-value=1.3e-10 Score=98.03 Aligned_cols=94 Identities=20% Similarity=0.406 Sum_probs=82.6
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.++|...+ ......++.|++ |++|+.+.|.++++.+.+ +.+.++.||++..+.++..++|.++||+++|++|+.+.
T Consensus 12 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 91 (112)
T 1t00_A 12 DDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAK 91 (112)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEEeCCEEEE
Confidence 35665544 445677788888 999999999999999998 56999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.|.++|+++.
T Consensus 92 ~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 92 TIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEESCCCHHHHHHHTHHHH
T ss_pred EEeCCCCHHHHHHHHHHHh
Confidence 99999 8999999998763
No 237
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=99.22 E-value=6e-11 Score=112.23 Aligned_cols=104 Identities=15% Similarity=0.255 Sum_probs=89.6
Q ss_pred ccccccceeecchhHHHHHhhcC---CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTSP---GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~~---~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
..||. +..+.+...|...+... ..+++.|++ |++|+.+.|.|.+++..|+.+.|+.||++ .+.++..++|.++
T Consensus 96 ~~~g~-v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~~l~~~~~i~~~ 173 (217)
T 2trc_P 96 PRYGF-VYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NTGAGDRFSSDVL 173 (217)
T ss_dssp CCCCS-EEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HHTCSTTSCGGGC
T ss_pred cCCCe-EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cHHHHHHCCCCCC
Confidence 34664 45565678888877554 567778998 99999999999999999999999999999 8889999999999
Q ss_pred cEEEEEECCeEeeeecCC-CH-------HHHHHHHHhhh
Q 005125 682 PAFKIYKNGSRVKEIPGH-QC-------ELLEKSVKLYS 712 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~g~-~~-------~~~~~~~~~~~ 712 (713)
||+++|++|+.+.++.|. +. +.|+.+|.++.
T Consensus 174 PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g 212 (217)
T 2trc_P 174 PTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYG 212 (217)
T ss_dssp SEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred CEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence 999999999999999998 43 89999998763
No 238
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=99.21 E-value=5.6e-11 Score=103.54 Aligned_cols=94 Identities=14% Similarity=0.233 Sum_probs=82.3
Q ss_pred chhHHHHHhhcCCceEEEeec-CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCc--ccEEEEEEC--Ce
Q 005125 618 SNERFRHFVTSPGMAVVLFCS-KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSS--IPAFKIYKN--GS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~-cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~--~Pt~~~~~~--g~ 691 (713)
+...|...+.....++++||+ |++|+++.|.|++++++| +.+.|++||+|+++.++..|||++ +||+++|++ |+
T Consensus 12 t~~~f~~~~~~~~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~~~~~g~ 91 (133)
T 2djk_A 12 GPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAKNQ 91 (133)
T ss_dssp CHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTTCC
T ss_pred ChHHHHHHhcCCCCEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEEecCcCc
Confidence 456777777667788888998 999999999999999999 569999999999999999999999 999999997 66
Q ss_pred Eeeeec--CC-CHHHHHHHHHhhh
Q 005125 692 RVKEIP--GH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~--g~-~~~~~~~~~~~~~ 712 (713)
. ..+. |. +.+.|.+||+++.
T Consensus 92 ~-~~~~~~g~~~~~~l~~fi~~~l 114 (133)
T 2djk_A 92 K-FPFDQEKEITFEAIKAFVDDFV 114 (133)
T ss_dssp B-CCCCSSSCCCHHHHHHHHHHHH
T ss_pred c-cCCCCccccCHHHHHHHHHHHH
Confidence 5 4665 88 9999999998763
No 239
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=99.21 E-value=6.4e-11 Score=104.36 Aligned_cols=99 Identities=8% Similarity=0.093 Sum_probs=83.8
Q ss_pred ceeecchhHHHHHhhc--CCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 613 LVFVSSNERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+.+.++|...+.. ...+++.|++ |++|+.+.|.++++++.+ +.+.|+.||+++.+.++..++|.++||+++|
T Consensus 5 l~~i~~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~ 84 (142)
T 1qgv_A 5 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFF 84 (142)
T ss_dssp SCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEE
T ss_pred HhccCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEE
Confidence 4445667788876643 5677788999 999999999999999887 5799999999999999999999999999999
Q ss_pred ECCeEee---------eecCC--CHHHHHHHHHhh
Q 005125 688 KNGSRVK---------EIPGH--QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~~~~---------~~~g~--~~~~~~~~~~~~ 711 (713)
++|+.+. ++.|. +.++|.++|++.
T Consensus 85 ~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~ 119 (142)
T 1qgv_A 85 FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV 119 (142)
T ss_dssp ETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence 9999987 46676 488999988764
No 240
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=99.20 E-value=1.3e-10 Score=97.21 Aligned_cols=95 Identities=19% Similarity=0.435 Sum_probs=83.6
Q ss_pred chhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 618 SNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 618 ~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+.++|...+ ......++.|++ |++|+.+.|.++++.+.++ .+.++.||++..+.++..++|.++||+++|++|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 86 (107)
T 1dby_A 7 NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKC 86 (107)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEE
T ss_pred cHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCCEEE
Confidence 345677655 345667777888 9999999999999999885 599999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhhh
Q 005125 694 KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~~ 712 (713)
.++.|. +.+.|.++|+++.
T Consensus 87 ~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 87 ETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEEESCCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHh
Confidence 999999 8899999998764
No 241
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.20 E-value=1e-11 Score=104.41 Aligned_cols=96 Identities=24% Similarity=0.351 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------HRAHH 331 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 331 (713)
+++.++.+|..++..|++++|+.+|+++++.+|.++.+++++|.++..+|++++|+..|++++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKS 353 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~a 353 (713)
.+|.++..+|+++.|+..+++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999888887766654
No 242
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=99.20 E-value=1.1e-10 Score=97.80 Aligned_cols=93 Identities=19% Similarity=0.355 Sum_probs=84.3
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeee
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKE 695 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 695 (713)
.+.|...+......++.|++ |++|+.+.|.++++.+.++ .+.++.+|++..+.++..++|.++||+++|++|+.+.+
T Consensus 8 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 87 (109)
T 2yzu_A 8 DQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPVEV 87 (109)
T ss_dssp TTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred HhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCCcEeee
Confidence 35666666667788888888 9999999999999999986 69999999999999999999999999999999999999
Q ss_pred ecCC-CHHHHHHHHHhh
Q 005125 696 IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~ 711 (713)
+.|. +.+.|.++|+++
T Consensus 88 ~~g~~~~~~l~~~l~~~ 104 (109)
T 2yzu_A 88 LVGAQPKRNYQAKIEKH 104 (109)
T ss_dssp EESCCCHHHHHHHHHTT
T ss_pred EeCCCCHHHHHHHHHHH
Confidence 9999 899999999876
No 243
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=7.7e-11 Score=102.98 Aligned_cols=100 Identities=24% Similarity=0.288 Sum_probs=85.1
Q ss_pred ccccccceeecchhHHHHHhhcC---CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTSP---GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~~---~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
.++|. +..+ +.++|...+... ..+++.|++ |++|+.+.|.|++++..++++.|+.||+++.+ ..++|.++
T Consensus 7 ~~~g~-v~~i-~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~---~~~~i~~~ 81 (135)
T 2dbc_A 7 GKFGE-LREI-SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI---EHYHDNCL 81 (135)
T ss_dssp CCCCS-CEEC-CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---SSCCSSCC
T ss_pred CCCCc-eEEc-CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---ccCCCCCC
Confidence 34665 4445 678888877653 357777988 99999999999999999999999999999876 67999999
Q ss_pred cEEEEEECCeEeeeecCC--------CHHHHHHHHHhh
Q 005125 682 PAFKIYKNGSRVKEIPGH--------QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 711 (713)
||+++|++|+.++++.|. +.+.|+++|+++
T Consensus 82 Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~ 119 (135)
T 2dbc_A 82 PTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119 (135)
T ss_dssp SEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence 999999999999999997 589999999876
No 244
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.20 E-value=1.2e-10 Score=100.73 Aligned_cols=99 Identities=17% Similarity=0.370 Sum_probs=85.7
Q ss_pred ceeecchhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+ +.++|...+ .....+++.|++ |++|+.+.|.++++.+.++ ++.|+.||+++.+.++..++|.++||+++|+
T Consensus 24 v~~l-~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 102 (128)
T 2o8v_B 24 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 102 (128)
T ss_dssp SEEE-CTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEEE
T ss_pred cEec-ChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEEe
Confidence 3444 456777554 455677778888 9999999999999999985 6999999999999999999999999999999
Q ss_pred CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+|+.+.++.|. +.+.|.++|+++.
T Consensus 103 ~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 103 NGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 99999999999 8999999998764
No 245
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=99.20 E-value=1.3e-10 Score=97.03 Aligned_cols=93 Identities=23% Similarity=0.353 Sum_probs=82.3
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.++|...+ ...+..++.|++ |++|+.+.|.++++.+.++ ++.|+.+|++..+.++..++|.++||+++|++|+.+.
T Consensus 9 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 88 (107)
T 2i4a_A 9 DSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVID 88 (107)
T ss_dssp TTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEEeCCEEEE
Confidence 35666554 455677777888 9999999999999998885 6999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|+++
T Consensus 89 ~~~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 89 KKVGALPKSQLKAWVESA 106 (107)
T ss_dssp EEESCCCHHHHHHHHHHT
T ss_pred EecCCCCHHHHHHHHHhc
Confidence 99999 999999999875
No 246
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=99.19 E-value=2.9e-10 Score=96.36 Aligned_cols=99 Identities=15% Similarity=0.275 Sum_probs=86.1
Q ss_pred ceeecchhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+ +.++|...+ ......++.|++ |++|+.+.|.++++.+.++ .+.|+.||++..+.++..++|.++||+++|+
T Consensus 9 v~~l-~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 87 (115)
T 1thx_A 9 VITI-TDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK 87 (115)
T ss_dssp EEEC-CGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eEEe-eccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEEEc
Confidence 4444 456777654 455677778888 9999999999999999985 6999999999999999999999999999999
Q ss_pred CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+|+.+.++.|. +.+.|.++|+++.
T Consensus 88 ~G~~~~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 88 GEQILDSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHh
Confidence 99999999999 8999999998763
No 247
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=99.19 E-value=8.1e-11 Score=102.58 Aligned_cols=99 Identities=16% Similarity=0.359 Sum_probs=86.2
Q ss_pred cceeecchhHHHHHhhcC--CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 612 NLVFVSSNERFRHFVTSP--GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~--~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
.+..+.+.+.|...+... ..+++.|++ |++|+.+.|.++++.+.+ ++.|+.||+++.+.++..++|.++||+++|
T Consensus 21 ~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 99 (133)
T 3cxg_A 21 IYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNIKALPTFEFY 99 (133)
T ss_dssp EEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred cEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccchHHHHHhcCCCCCCEEEEE
Confidence 355566677888877654 367777988 999999999999998877 699999999999999999999999999999
Q ss_pred E--CCe--EeeeecCCCHHHHHHHHHhh
Q 005125 688 K--NGS--RVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 688 ~--~g~--~~~~~~g~~~~~~~~~~~~~ 711 (713)
+ +|+ .+.++.|.+.+.|.++|+++
T Consensus 100 ~~~~g~g~~~~~~~G~~~~~l~~~l~~~ 127 (133)
T 3cxg_A 100 FNLNNEWVLVHTVEGANQNDIEKAFQKY 127 (133)
T ss_dssp EEETTEEEEEEEEESCCHHHHHHHHHHH
T ss_pred EecCCCeEEEEEEcCCCHHHHHHHHHHH
Confidence 7 888 88999999999999999876
No 248
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=99.18 E-value=1.4e-10 Score=102.24 Aligned_cols=95 Identities=23% Similarity=0.454 Sum_probs=78.2
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+...|...+...+.+++.|++ |++|+.+.|.++++.+.++ ++.|+.||++..+.++..++|.++||+++|++|+.+.
T Consensus 39 ~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 118 (140)
T 1v98_A 39 DEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVA 118 (140)
T ss_dssp ----------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEEeCCcEEE
Confidence 345677766555557777888 9999999999999999986 6999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.|.++|+++.
T Consensus 119 ~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 119 TWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 99999 8999999998763
No 249
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=99.17 E-value=2.9e-10 Score=94.54 Aligned_cols=93 Identities=25% Similarity=0.439 Sum_probs=82.2
Q ss_pred hhHHHHHhh-cCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFVT-SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l~-~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.++|...+. .....++.|++ |++|+.+.|.++++.+.++ .+.++.+|++..+.++..++|.++||+++|++|+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 86 (105)
T 1fb6_A 7 DSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKE 86 (105)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeCCeEEE
Confidence 356766554 45577777888 9999999999999999986 4999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|+++
T Consensus 87 ~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 87 SIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEEECCCHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHhh
Confidence 99999 899999999875
No 250
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=99.15 E-value=1e-10 Score=105.13 Aligned_cols=99 Identities=11% Similarity=0.197 Sum_probs=79.3
Q ss_pred cceeecchhHHHHHhhc--CCceEEEeec---------CchhHHHHHHHHHHHHhC------CCcEEEEEeCCCcHhhHH
Q 005125 612 NLVFVSSNERFRHFVTS--PGMAVVLFCS---------KAEHKQVLQLMEQVCKRF------PSVNFLKVEVEDHPYIAK 674 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~--~~~~vv~f~~---------cg~c~~~~~~~~~l~~~~------p~~~~~~v~~d~~~~~~~ 674 (713)
.+..+ +...|...+.. ...++|+|++ ||+|+++.|.|+++++.+ +.+.|++||+|+.+.++.
T Consensus 19 ~vi~l-t~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~ 97 (178)
T 3ga4_A 19 GVITV-TADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVK 97 (178)
T ss_dssp SEEEC-CTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHH
T ss_pred CCEEC-CHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHH
Confidence 34443 45688887654 3357888887 999999999999999876 469999999999999999
Q ss_pred HcCCCcccEEEEEECCeEee------------ee---c--CCCHHHHHHHHHhh
Q 005125 675 SEGVSSIPAFKIYKNGSRVK------------EI---P--GHQCELLEKSVKLY 711 (713)
Q Consensus 675 ~~~v~~~Pt~~~~~~g~~~~------------~~---~--g~~~~~~~~~~~~~ 711 (713)
.+||+++||+++|++|.... ++ . |.+.+.|.+||.+.
T Consensus 98 ~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~ 151 (178)
T 3ga4_A 98 DLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKI 151 (178)
T ss_dssp HTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHH
T ss_pred HcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHh
Confidence 99999999999999886433 22 1 34899999999764
No 251
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=99.15 E-value=2.5e-10 Score=97.81 Aligned_cols=93 Identities=25% Similarity=0.341 Sum_probs=82.0
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
...|...+ ......++.|++ |++|+.+.|.++++++.++ .+.|+.||++..+.++..++|.++||+++|++|+.+.
T Consensus 19 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 98 (121)
T 2i1u_A 19 DASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVK 98 (121)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEECCEEEE
Confidence 35565543 455677888888 9999999999999999884 6999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|+++
T Consensus 99 ~~~G~~~~~~l~~~l~~~ 116 (121)
T 2i1u_A 99 RIVGAKGKAALLRELSDV 116 (121)
T ss_dssp EEESCCCHHHHHHHTCSC
T ss_pred EecCCCCHHHHHHHHHHH
Confidence 99999 899999999765
No 252
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=99.15 E-value=1.5e-10 Score=100.09 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=81.7
Q ss_pred chhHHHHHhh-cCCceEEEeec--CchhHHHHHHHHHHHHhC------CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 618 SNERFRHFVT-SPGMAVVLFCS--KAEHKQVLQLMEQVCKRF------PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 618 ~~~~~~~~l~-~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~------p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+.+.|...+. ....+++.|++ |++|+.+.|.|+++++.+ +.+.|+.||+++.+.++..++|.++||+++|.
T Consensus 21 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 100 (127)
T 3h79_A 21 TDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYT 100 (127)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEC
T ss_pred ChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCEEEEEe
Confidence 4567887775 46778888999 999999999999998642 56999999999999999999999999999999
Q ss_pred CCeEe--eeecCC-CHHHHHHHHHhhh
Q 005125 689 NGSRV--KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~--~~~~g~-~~~~~~~~~~~~~ 712 (713)
+|..+ ..+.|. +.+.|.+||++.+
T Consensus 101 ~g~~~~~~~~~G~~~~~~l~~~i~~~s 127 (127)
T 3h79_A 101 RIDKQEPFEYSGQRYLSLVDSFVFQNT 127 (127)
T ss_dssp SSCSSSCEECCSCCCHHHHHHHHHHHC
T ss_pred CCCCCCceEecCCccHHHHHHHHHhcC
Confidence 98765 467788 9999999998753
No 253
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=99.14 E-value=7.3e-11 Score=102.28 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=78.6
Q ss_pred HhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-C
Q 005125 625 FVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-Q 700 (713)
Q Consensus 625 ~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~ 700 (713)
.....+.+++.|++ |++|+.+.|.++++.+.++ .+.++.||++..+.++..++|.++||+++|++|+.+.++.|. +
T Consensus 38 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~ 117 (128)
T 3ul3_B 38 VNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFVS 117 (128)
T ss_dssp TTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEEEESSCCC
T ss_pred HHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEEEecCCCC
Confidence 33445677778998 9999999999999998885 699999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHhh
Q 005125 701 CELLEKSVKLY 711 (713)
Q Consensus 701 ~~~~~~~~~~~ 711 (713)
.+.|.++|+++
T Consensus 118 ~~~l~~~l~~~ 128 (128)
T 3ul3_B 118 SNDLIALIKKH 128 (128)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhC
Confidence 99999999864
No 254
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.14 E-value=1.3e-07 Score=101.88 Aligned_cols=294 Identities=8% Similarity=-0.038 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGR-QIEALVECKEAIRI---DPCYHRAHHRL 333 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~l 333 (713)
.+...+..+...+-.|+++.+..+|++++...| +..+|..........+. .+.....|+.++.. ++.+...|...
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 445566666666666999999999999999888 77888887777776663 45677888988875 78888888888
Q ss_pred HHHHH----HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH--------HHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 334 AMLYF----RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTK--------CNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 334 a~~~~----~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
...+. .+++.+.+...|++++. ....+..........+.. .........+..|...|+.+....+..
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 87654 35678899999999998 644433221111111110 011112344555565566555443332
Q ss_pred hHHHHHHHHHHHHHc--c-----CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 402 APQVYALQAEALLRL--Q-----RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474 (713)
Q Consensus 402 ~~~~~~~la~~~~~~--g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 474 (713)
....|......-... + ..+.....|++++...|. .+.+|+..+..+...|+.++|...|++|+
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~----------~~~lW~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY----------AEEVYFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223444322222111 0 134567899999887774 46689999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 475 QIDPNNKEVIKGVKMAK----------------------------AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 475 ~~~p~~~~~~~~~~~~~----------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
.. |.+...|..+.... ....+...+....+.++.+.|...|.+| ...+..
T Consensus 241 ~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~ 318 (493)
T 2uy1_A 241 EM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVG 318 (493)
T ss_dssp HH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCC
T ss_pred hC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCC
Confidence 99 99877765443320 0012333444445567788888888888 333334
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHH
Q 005125 527 SVLLCNRAACRSKLG-QYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 527 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
..+|...|.+....+ +.+.|...|+.+++..|+.+..+.
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~ 358 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 566666666666555 588888888888888777765543
No 255
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.14 E-value=3.6e-10 Score=90.92 Aligned_cols=85 Identities=22% Similarity=0.341 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
.++..++.+|..+...|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+.+|+++++++|++..++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q 005125 337 YFRLG 341 (713)
Q Consensus 337 ~~~~g 341 (713)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 98765
No 256
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=2e-10 Score=101.39 Aligned_cols=98 Identities=20% Similarity=0.319 Sum_probs=85.4
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcHhhHHHcCCCcccEEEE
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~ 686 (713)
+..+ +...|...+.....+++.|++ |++|+.+.|.|+++.+.+. .+.|+.||++..+.++..++|.++||+++
T Consensus 19 v~~l-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 97 (140)
T 2dj1_A 19 VWVL-NDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKI 97 (140)
T ss_dssp EEEC-CTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEE
T ss_pred CEEc-ChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEE
Confidence 4444 567788888777788888998 9999999999999988763 39999999999999999999999999999
Q ss_pred EECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 687 YKNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 687 ~~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
|++|+ +.++.|. +.+.|.++|+++.
T Consensus 98 ~~~G~-~~~~~g~~~~~~l~~~l~~~~ 123 (140)
T 2dj1_A 98 LKKGQ-AVDYDGSRTQEEIVAKVREVS 123 (140)
T ss_dssp EETTE-EEECCSCCCHHHHHHHHHHHH
T ss_pred EECCc-EEEcCCCCCHHHHHHHHHHhc
Confidence 99999 7788898 9999999998763
No 257
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=99.13 E-value=5.3e-10 Score=106.97 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=87.1
Q ss_pred ccccccceeecchhHHHHHhhc---CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTS---PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~---~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
..||. +..+.+...|...+.. ...+|+.||+ |++|+.+.|.|.+++..|+++.|+.||++. +.++..|+|.++
T Consensus 109 ~~~G~-V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-~~l~~~~~I~~~ 186 (245)
T 1a0r_P 109 PRYGF-VYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN-TGAGDRFSSDVL 186 (245)
T ss_dssp CCCCS-EEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-HCCTTSSCTTTC
T ss_pred CCCCe-EEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-HHHHHHCCCCCC
Confidence 34664 4556567889888753 4567777998 999999999999999999999999999987 778899999999
Q ss_pred cEEEEEECCeEeeeecCC--------CHHHHHHHHHhh
Q 005125 682 PAFKIYKNGSRVKEIPGH--------QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 711 (713)
||+++|++|+.++++.|. +.+.|+.+|.++
T Consensus 187 PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~ 224 (245)
T 1a0r_P 187 PTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY 224 (245)
T ss_dssp SEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred CEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence 999999999999999887 245799998875
No 258
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.10 E-value=4.7e-11 Score=100.36 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=87.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..++.+|.++...|++++|+..|+++++++|+++.++. ++|.++...|++++|+..|+++++++|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYS------------NKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4568899999999999999999999999999999998887 7999999999999999999999999999
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 526 N------SVLLCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 526 ~------~~~~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
+ ..+++.+|.++..+|++++|+..+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 8 88999999999999998888776654
No 259
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.1e-10 Score=98.28 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=82.3
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhC-----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
..+|...+ .....+++.|++ |++|+.+.|.++++++.+ +.+.|+.||++..+.++..++|.++||+++|.+|
T Consensus 14 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 93 (133)
T 1x5d_A 14 DDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKG 93 (133)
T ss_dssp TTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSSEEEEEETT
T ss_pred HhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeCeEEEEeCC
Confidence 45777765 445667778988 999999999999999876 4699999999999999999999999999999999
Q ss_pred eEeeeecCC-CHHHHHHHHHhh
Q 005125 691 SRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+.+.++.|. +.+.|.++|+++
T Consensus 94 ~~~~~~~G~~~~~~l~~~l~~~ 115 (133)
T 1x5d_A 94 ESPVDYDGGRTRSDIVSRALDL 115 (133)
T ss_dssp EEEEEECSCCSHHHHHHHHHHH
T ss_pred CceEEecCCCCHHHHHHHHHHH
Confidence 999999999 999999999875
No 260
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=3.5e-10 Score=97.68 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=81.5
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+ +.++|...+.. .+++.|++ |++|+.+.|.++++.+.++ ++.|+.||+++.+.++..++|.++||+++|+
T Consensus 9 v~~l-~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 85 (126)
T 1x5e_A 9 VRVI-TDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCK 85 (126)
T ss_dssp EEEC-CTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cEEe-cHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEEEe
Confidence 3444 44677776543 47788888 9999999999999998875 6999999999999999999999999999999
Q ss_pred CCeEeeeecCC-CHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|+ +.++.|. +.+.|.++|++.
T Consensus 86 ~G~-~~~~~G~~~~~~l~~~l~~~ 108 (126)
T 1x5e_A 86 DGE-FRRYQGPRTKKDFINFISDK 108 (126)
T ss_dssp TTE-EEECCSCCCHHHHHHHHHTC
T ss_pred CCe-EEEeecCCCHHHHHHHHHHH
Confidence 998 6788998 999999999875
No 261
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=99.10 E-value=5.2e-10 Score=97.95 Aligned_cols=94 Identities=20% Similarity=0.302 Sum_probs=81.7
Q ss_pred chhHHHHHhhc------------CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCccc
Q 005125 618 SNERFRHFVTS------------PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIP 682 (713)
Q Consensus 618 ~~~~~~~~l~~------------~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~P 682 (713)
+.++|...+.. ...+++.|++ |++|+.+.|.++++.+.++ .+.|+.||++..+.++..++|.++|
T Consensus 15 ~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P 94 (136)
T 2l5l_A 15 TKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIP 94 (136)
T ss_dssp CHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSC
T ss_pred cchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCCCC
Confidence 45677776642 4567888888 9999999999999999985 6999999999999999999999999
Q ss_pred EEEEE-ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 683 AFKIY-KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
|+++| ++|+.+ .+.|. +.+.|.++|+++.
T Consensus 95 t~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 95 SILFIPMEGKPE-MAQGAMPKASFKKAIDEFL 125 (136)
T ss_dssp EEEEECSSSCCE-EEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCcEE-EEeCCCCHHHHHHHHHHHh
Confidence 99999 789887 67787 9999999998763
No 262
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=99.10 E-value=1.6e-10 Score=99.14 Aligned_cols=95 Identities=18% Similarity=0.357 Sum_probs=78.8
Q ss_pred chhHHHHHh-hcCCceEEEeec--Cc--------------hhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCC
Q 005125 618 SNERFRHFV-TSPGMAVVLFCS--KA--------------EHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVS 679 (713)
Q Consensus 618 ~~~~~~~~l-~~~~~~vv~f~~--cg--------------~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~ 679 (713)
+..+|...+ ...+.+++.|++ |+ +|+.+.|.++++.+.++ .+.++.||++..+.++..++|.
T Consensus 9 ~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~ 88 (123)
T 1oaz_A 9 TDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIR 88 (123)
T ss_dssp CSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGGGTCC
T ss_pred ChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCC
Confidence 345676544 456677788998 99 99999999999998885 6999999999999999999999
Q ss_pred cccEEEEEECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 680 SIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 680 ~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
++||+++|++|+.+.++.|. +.+.|.++|++..
T Consensus 89 ~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 89 GIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 122 (123)
T ss_dssp BSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred ccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999 8999999998763
No 263
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.09 E-value=6.6e-10 Score=106.35 Aligned_cols=97 Identities=16% Similarity=0.331 Sum_probs=86.4
Q ss_pred ecchhHHHHH-hhcCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 616 VSSNERFRHF-VTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 616 ~~~~~~~~~~-l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
..+.++|... +...+.+++.|++ |++|+.+.|.++++.+.+++ +.|+.||++..+.++..++|.++||+++|++|+
T Consensus 16 ~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 95 (222)
T 3dxb_A 16 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 95 (222)
T ss_dssp ECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEEEETTE
T ss_pred eCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEEEECCe
Confidence 3456778774 4556678888999 99999999999999999865 999999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
.+.++.|. +.+.|.++|++..
T Consensus 96 ~~~~~~G~~~~~~l~~~l~~~l 117 (222)
T 3dxb_A 96 VAATKVGALSKGQLKEFLDANL 117 (222)
T ss_dssp EEEEEESCCCHHHHHHHHHHHS
T ss_pred EEEEeccccChHHHHHHHHhhc
Confidence 99999999 9999999998763
No 264
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=99.09 E-value=3.9e-11 Score=104.41 Aligned_cols=102 Identities=19% Similarity=0.379 Sum_probs=89.7
Q ss_pred ccceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEE
Q 005125 611 SNLVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAF 684 (713)
Q Consensus 611 ~~i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~ 684 (713)
..+..+.+.+.|...+.. ....++.|++ |++|+.+.|.++++.+.++++.|+.||++..+.++..++|.++||+
T Consensus 14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~ 93 (130)
T 1wmj_A 14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTF 93 (130)
T ss_dssp SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTCCSSCCC
T ss_pred cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCCCccceE
Confidence 345566667788877654 5677888888 9999999999999999998999999999999999999999999999
Q ss_pred EEEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 685 KIYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 685 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
++|++|+.+.++.|.+.+.|.++|+++.
T Consensus 94 ~~~~~g~~~~~~~g~~~~~l~~~l~~~~ 121 (130)
T 1wmj_A 94 LFIKDGAEADKVVGARKDDLQNTIVKHV 121 (130)
T ss_dssp CBCTTTTCCBCCCTTCTTTHHHHHHHHT
T ss_pred EEEeCCeEEEEEeCCCHHHHHHHHHHHH
Confidence 9999999999999998899999998763
No 265
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=99.08 E-value=2.5e-10 Score=97.57 Aligned_cols=95 Identities=17% Similarity=0.304 Sum_probs=84.2
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+...|...+......++.|++ |++|+.+.|.++++.+.+ +.+.|+.+|.+..+.++..++|.++||+++|++|+
T Consensus 13 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 92 (120)
T 1mek_A 13 RKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGD 92 (120)
T ss_dssp CTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSC
T ss_pred chhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEEEeCCC
Confidence 346777777777778888998 999999999999999887 35899999999999999999999999999999999
Q ss_pred Ee--eeecCC-CHHHHHHHHHhhh
Q 005125 692 RV--KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~--~~~~g~-~~~~~~~~~~~~~ 712 (713)
.+ ..+.|. +.+.|.++|+++.
T Consensus 93 ~~~~~~~~g~~~~~~l~~~l~~~~ 116 (120)
T 1mek_A 93 TASPKEYTAGREADDIVNWLKKRT 116 (120)
T ss_dssp SSSCEECCCCSSHHHHHHHHHTTS
T ss_pred cCCcccccCccCHHHHHHHHHhcc
Confidence 87 888898 9999999998763
No 266
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=99.08 E-value=2.2e-10 Score=97.62 Aligned_cols=93 Identities=12% Similarity=0.154 Sum_probs=76.2
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeC----CCcHhhHHHcCCCcccEEEEEECC
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEV----EDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~----d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
+.+.|...+......++.|++ |++|+.+.|.++++.+.++ .+.++.++. +..+.++..++|.++||+++|++|
T Consensus 18 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~G 97 (118)
T 1zma_A 18 TVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDG 97 (118)
T ss_dssp CHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETT
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEECC
Confidence 456777777777788888999 9999999999999998774 355543322 234578899999999999999999
Q ss_pred eEeeeecCC-CHHHHHHHHHh
Q 005125 691 SRVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 691 ~~~~~~~g~-~~~~~~~~~~~ 710 (713)
+.+.++.|. +.+.|.++|++
T Consensus 98 ~~~~~~~G~~~~~~l~~~l~k 118 (118)
T 1zma_A 98 QINVRCDSSMSAQEIKDFAGL 118 (118)
T ss_dssp EEEEECCTTCCHHHHHHHHTC
T ss_pred EEEEEecCCCCHHHHHHHhhC
Confidence 999999999 99999999863
No 267
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=99.07 E-value=4.4e-10 Score=97.01 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=78.4
Q ss_pred hcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEe--CCCcHhhHHHcCCCcccEEEEEE-CCeEeeeecCC-
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVE--VEDHPYIAKSEGVSSIPAFKIYK-NGSRVKEIPGH- 699 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~--~d~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~- 699 (713)
.....+++.|++ |++|+.+.|.++++.+.+ +++.|+.|| ++..+.++..++|.++||+++|. +|+.+.++.|.
T Consensus 24 ~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~~ 103 (126)
T 2l57_A 24 KEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLM 103 (126)
T ss_dssp CSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEESCC
T ss_pred hCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecCCC
Confidence 345677788888 999999999999999998 689999999 99999999999999999999999 89999999998
Q ss_pred CHHHHHHHHHhhh
Q 005125 700 QCELLEKSVKLYS 712 (713)
Q Consensus 700 ~~~~~~~~~~~~~ 712 (713)
+.+.|.++|+++.
T Consensus 104 ~~~~l~~~l~~~~ 116 (126)
T 2l57_A 104 RKNNIETILNSLG 116 (126)
T ss_dssp CHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998763
No 268
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=99.07 E-value=3.6e-10 Score=96.95 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=80.2
Q ss_pred hhHHHH-HhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRH-FVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~-~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.++|.. .+......++.|++ |++|+.+.|.++++++.++ ++.|+.||++..+.++..++|.++||+++|..|..+.
T Consensus 10 ~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~ 89 (122)
T 3aps_A 10 PQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKK 89 (122)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEEGGGT
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEEeCCCccc
Confidence 456754 44556678888998 9999999999999998886 7999999999999999999999999999998776677
Q ss_pred eecCC-----CHHHHHHHHHhh
Q 005125 695 EIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-----~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|++.
T Consensus 90 ~~~g~~~~~~~~~~l~~~l~~~ 111 (122)
T 3aps_A 90 SIWEEQINSRDAKTIAALIYGK 111 (122)
T ss_dssp EEEEEEECCSCHHHHHHHHHHH
T ss_pred eeeccccCcCCHHHHHHHHHHH
Confidence 77773 899999999875
No 269
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.06 E-value=7.9e-10 Score=93.61 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 276 EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 276 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++..+|+.+|.+|..+|++++|+.+|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccc
Q 005125 356 LANQKD 361 (713)
Q Consensus 356 ~~~p~~ 361 (713)
+.|..
T Consensus 82 -~~~~~ 86 (115)
T 2kat_A 82 -AAQSR 86 (115)
T ss_dssp -HHHHH
T ss_pred -hcccc
Confidence 77754
No 270
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=99.06 E-value=1e-09 Score=96.87 Aligned_cols=94 Identities=22% Similarity=0.322 Sum_probs=80.5
Q ss_pred chhHHHHHhhc------------CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCccc
Q 005125 618 SNERFRHFVTS------------PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIP 682 (713)
Q Consensus 618 ~~~~~~~~l~~------------~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~P 682 (713)
+...|...+.. ...+++.|++ |++|+.+.|.++++.+.++ .+.|+.||++..+.++..++|.++|
T Consensus 28 ~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~P 107 (141)
T 3hxs_A 28 TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIP 107 (141)
T ss_dssp CHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred cHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcCCCCcC
Confidence 44567666654 4677788998 9999999999999999986 6999999999999999999999999
Q ss_pred EEEEEE-CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 683 AFKIYK-NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
|+++|. +|+.+ .+.|. +.+.|.++|+++.
T Consensus 108 t~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l 138 (141)
T 3hxs_A 108 TIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVL 138 (141)
T ss_dssp EEEEECSSSCCE-EEESCCCHHHHHHHHHHTT
T ss_pred EEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHH
Confidence 999995 56555 78888 9999999998763
No 271
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.06 E-value=5.9e-10 Score=96.83 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=83.2
Q ss_pred ceeecchhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+ +.++|...+ .....+++.|++ |++|+.+.|.++++.+.+++ +.|+.||++..+.++..++|.++||+++|.
T Consensus 19 v~~l-~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 97 (130)
T 2dml_A 19 VIEL-TPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFG 97 (130)
T ss_dssp SEEC-CTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEEEES
T ss_pred cEEC-CHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEEEEe
Confidence 4444 346777744 456678888998 99999999999999999865 899999999999999999999999999999
Q ss_pred CCeE-eeeecCC-CHHHHHHHHHhh
Q 005125 689 NGSR-VKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~-~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|.. +.++.|. +.+.|.++|.+.
T Consensus 98 ~~~~~~~~~~G~~~~~~l~~~l~~~ 122 (130)
T 2dml_A 98 ANKNKPEDYQGGRTGEAIVDAALSA 122 (130)
T ss_dssp SCTTSCEECCSCCSHHHHHHHHHHH
T ss_pred CCCCeEEEeecCCCHHHHHHHHHHH
Confidence 8776 7889998 899999998765
No 272
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.05 E-value=1.1e-09 Score=92.83 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 005125 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 543 (713)
++|+..|+++++.+|+++.++. .+|.++...|++++|+..|+++++++|+++.+|+++|.+|..+|++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRF------------TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH
Confidence 3588999999999999998887 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChH
Q 005125 544 EKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 544 ~~A~~~~~~al~~~p~~~~ 562 (713)
++|+..|++++++.|....
T Consensus 70 ~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 70 AGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 9999999999999876543
No 273
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=99.03 E-value=2.6e-10 Score=94.37 Aligned_cols=83 Identities=8% Similarity=0.093 Sum_probs=66.6
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCc--HhhHHHcCCCcccEEEEEECCeEeeeecCC-C
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDH--PYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-Q 700 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~--~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~ 700 (713)
.+.++|.|++ |++|+++.+.+....+.. ..+.++.||++.. +.++..++|.++|||+||++|+++.++.|+ +
T Consensus 18 ~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~~ 97 (116)
T 3dml_A 18 AELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPG 97 (116)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCCC
Confidence 4678888999 999999987543322111 1156788888875 578899999999999999999999999999 9
Q ss_pred HHHHHHHHHhh
Q 005125 701 CELLEKSVKLY 711 (713)
Q Consensus 701 ~~~~~~~~~~~ 711 (713)
++.+..+|++.
T Consensus 98 ~~~f~~~L~~~ 108 (116)
T 3dml_A 98 EDFFWPMLARL 108 (116)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 274
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.03 E-value=1.1e-09 Score=103.93 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=86.0
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+...|...+.....+++.|++ |++|+.+.|.++++++.++ .+.|+.||++..+.++..++|.++||+++|++|+.+.
T Consensus 103 ~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 182 (210)
T 3apq_A 103 ERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAV 182 (210)
T ss_dssp CHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEECTTSCCE
T ss_pred cHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEEEECCCcee
Confidence 456788777777888889999 9999999999999999885 5999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|++.
T Consensus 183 ~~~G~~~~~~l~~~i~~~ 200 (210)
T 3apq_A 183 KYNGDRSKESLVAFAMQH 200 (210)
T ss_dssp ECCSCCCHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHh
Confidence 99998 999999999875
No 275
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=99.03 E-value=7.8e-10 Score=96.54 Aligned_cols=98 Identities=12% Similarity=0.193 Sum_probs=83.6
Q ss_pred eeecchhHHHHHhhc--CCceEEEeec--CchhHHHHHHH---HHHHHhCCCcEEEEEeC----CCcHhhHHHcCCCccc
Q 005125 614 VFVSSNERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLM---EQVCKRFPSVNFLKVEV----EDHPYIAKSEGVSSIP 682 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~p~~~~~~v~~----d~~~~~~~~~~v~~~P 682 (713)
..+.+.+.+...+.. ...+++.|++ |++|+.+.|.+ +++.+.++++.++.||+ +..+.++..++|.++|
T Consensus 14 ~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~~~P 93 (134)
T 2fwh_A 14 TQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLP 93 (134)
T ss_dssp EECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSS
T ss_pred EEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCCCCC
Confidence 335566677766643 5677788988 99999999998 89998888899999999 5678899999999999
Q ss_pred EEEEE-ECCeEe--eeecCC-CHHHHHHHHHhh
Q 005125 683 AFKIY-KNGSRV--KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 683 t~~~~-~~g~~~--~~~~g~-~~~~~~~~~~~~ 711 (713)
|+++| ++|+.+ .++.|. +.++|.++|++.
T Consensus 94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 99999 889998 789999 999999999875
No 276
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.03 E-value=7.6e-10 Score=90.77 Aligned_cols=91 Identities=18% Similarity=0.128 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKAT-YRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
.+.+|..++..|++++|+..|+++++.+|++.. +++.+|.++..+|++++|+.+|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999988754
Q ss_pred CCHHHHHHHHHHHhhhhcccc
Q 005125 341 GEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~ 361 (713)
+.+.+++..|++++. .+|++
T Consensus 75 ~~~~~a~~~~~~~~~-~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMY-NQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTH-HHHCC
T ss_pred HHHHHHHHHHHHHhc-cCccc
Confidence 567888999999988 77765
No 277
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.02 E-value=2.6e-09 Score=85.73 Aligned_cols=84 Identities=29% Similarity=0.388 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+.+++.+|.++...|++++|+.+|++++..+|++..++. .+|.++...|++++|+.+|+++++++|+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY------------NLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4568889999999999999999999999999999988877 6999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 005125 526 NSVLLCNRAACRSKLG 541 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g 541 (713)
++.++.++|.++..+|
T Consensus 76 ~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988765
No 278
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=8.8e-11 Score=103.13 Aligned_cols=93 Identities=13% Similarity=0.195 Sum_probs=79.7
Q ss_pred chhHHHHHhhcCC--ceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCC------cccEEE
Q 005125 618 SNERFRHFVTSPG--MAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVS------SIPAFK 685 (713)
Q Consensus 618 ~~~~~~~~l~~~~--~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~------~~Pt~~ 685 (713)
+.+.|...+.... .+++.|++ |++|+.+.|.|+++++.++ ++.|+.||+++.+.++..++|. ++||++
T Consensus 13 ~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt~~ 92 (137)
T 2dj0_A 13 NDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLI 92 (137)
T ss_dssp CTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSCSSEEE
T ss_pred cHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCCCCEEE
Confidence 3567887776554 66888998 9999999999999998884 6999999999999999999999 999999
Q ss_pred EEECCeEeeeecCC-CHHHHHHHHHh
Q 005125 686 IYKNGSRVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 686 ~~~~g~~~~~~~g~-~~~~~~~~~~~ 710 (713)
+|++|+.+.++.|. +.+.|.++|.+
T Consensus 93 ~~~~G~~~~~~~G~~~~~~l~~~l~~ 118 (137)
T 2dj0_A 93 LFQGGKEAMRRPQIDKKGRAVSWTFS 118 (137)
T ss_dssp EESSSSEEEEESCBCSSSCBCCCCCC
T ss_pred EEECCEEEEEecCcCchHHHHHHHhc
Confidence 99999999999998 66666665543
No 279
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.02 E-value=5.8e-10 Score=91.52 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=80.8
Q ss_pred HHHHHHHHcccHHHHHHHHHHHhccCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHH
Q 005125 498 LRGNLLFKASKYKEACYAYSEGLEHEAYNSV-LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----EAAIQDY 572 (713)
Q Consensus 498 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----~~A~~~~ 572 (713)
.+|..+...|++++|+..|+++++.+|+++. +++++|.+|..+|++++|+..|+++++++|++..++. .+++..|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~ 84 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILNFY 84 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999 9999999999999999999999999999999998873 8899999
Q ss_pred HHHHHhCCCCH
Q 005125 573 EMLIREIPGNE 583 (713)
Q Consensus 573 ~~al~~~p~~~ 583 (713)
++++..+|++.
T Consensus 85 ~~~~~~~p~~~ 95 (99)
T 2kc7_A 85 NKDMYNQLEHH 95 (99)
T ss_dssp CCTTHHHHCCS
T ss_pred HHHhccCcccc
Confidence 99988888764
No 280
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.00 E-value=2e-09 Score=88.50 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC 325 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 325 (713)
+|.++.+++.+|.+++..|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 57777788888888888888888888888888888888888888888888888888888888888777553
No 281
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.99 E-value=2.1e-09 Score=114.87 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAI-----NSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRI--------DPC 325 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~ 325 (713)
....+..+..+|+|++|+.+|++++++ .|++ +..+.++|.+|..+|+|++|+.++++++++ +|+
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 344566677899999999999999986 3343 568899999999999999999999999986 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh----hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL----ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
-...+.+||.+|..+|++++|+.+|++|+.. +.|+++.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~-------------------------------------- 433 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPI-------------------------------------- 433 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH--------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH--------------------------------------
Confidence 4678999999999999999999999999881 2333321
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHhhccc
Q 005125 402 APQVYALQAEALLRLQRHQEAHDSYNKSP 430 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 430 (713)
...+..+++.++..++.+++|...|.++.
T Consensus 434 ~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 434 TKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12455677788888888888888887763
No 282
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.98 E-value=2.9e-07 Score=99.13 Aligned_cols=311 Identities=10% Similarity=-0.085 Sum_probs=153.9
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCC--CCchhhhHhh------cCCCCHHHHHHHHHHHH----Hhc
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQP--SGEFPQCISS------LNKLDPEELKFMGNEAY----NKA 273 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~--~~~a~~~~~~------~~~~~~~~~~~lg~~~~----~~g 273 (713)
.+++...|++++...|+.. .|. ..+....... .+.....++. .++.+...|......+. .++
T Consensus 30 ~e~~~~iferal~~~ps~~---LW~---~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 30 YRSLESLFGRCLKKSYNLD---LWM---LYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp HHHHHHHHHHHSTTCCCHH---HHH---HHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH
T ss_pred HHHHHHHHHHHhccCCCHH---HHH---HHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH
Confidence 3589999999999887422 232 2122221111 1334445554 36788888888887654 467
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH-HHHHH-------------HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 005125 274 RFEDALALYDRAIAINSSKATYRSN-KSAAL-------------IGLGRQIEALVECKEAIRIDPC-YHRAHHRLAMLYF 338 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~-la~~~-------------~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 338 (713)
+.+.+...|++|+..-+....-++. ....- .....+..|...|+.+....+. ....|..+...-.
T Consensus 104 ~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 8899999999999853332221111 11100 0112223333333333332221 2223333222211
Q ss_pred Hc--CC-----HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 005125 339 RL--GE-----AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE 411 (713)
Q Consensus 339 ~~--g~-----~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~ 411 (713)
.. +- .+.....|++++. ..|... ..++..+......|+.+.|...|++++.. |.+. .++...+.
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~-~~p~~~------~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-~l~~~y~~ 254 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILD-SFYYAE------EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-FLSLYYGL 254 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHH-HTTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-HHHHHHHH
T ss_pred cCCccCcchhhHHHHHHHHHHHHH-cCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-HHHHHHHh
Confidence 10 00 2334455666655 555543 23333344444555666666666666666 5553 33333333
Q ss_pred HHHHccCHHHHHHHhhcccc-----CChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPK-----FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG 486 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 486 (713)
......-++.....+..... ..+. ....+|...+..+...++.+.|...|++| ...+.....|.
T Consensus 255 ~~e~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i- 323 (493)
T 2uy1_A 255 VMDEEAVYGDLKRKYSMGEAESAEKVFSK---------ELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFI- 323 (493)
T ss_dssp HTTCTHHHHHHHHHTC----------CHH---------HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHH-
T ss_pred hcchhHHHHHHHHHHHhhccchhhhhccc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHH-
Confidence 31100012222222110000 0011 01235555666666666777777777777 32222333332
Q ss_pred HHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 487 VKMAKAMASARLRGNLLFKAS-KYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 553 (713)
..|.+.+..+ +.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++
T Consensus 324 -----------~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 324 -----------YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp -----------HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred -----------HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2344444444 4777777777777777777766666666667777777777777776
No 283
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=98.95 E-value=1.6e-09 Score=86.05 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=69.8
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKS 707 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 707 (713)
.++.|++ |++|+.+.|.++++.+.++ ++.++.+|+++.+.++..++|.++||+++ +|+. ++.|. +.+.|.++
T Consensus 4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~~ 79 (85)
T 1nho_A 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFEA 79 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHHH
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHHH
Confidence 5777888 9999999999999998886 79999999999999999999999999988 8877 78888 99999999
Q ss_pred HHhhh
Q 005125 708 VKLYS 712 (713)
Q Consensus 708 ~~~~~ 712 (713)
|+++.
T Consensus 80 l~~~l 84 (85)
T 1nho_A 80 INDEM 84 (85)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98764
No 284
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=98.94 E-value=3.6e-09 Score=101.81 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=81.0
Q ss_pred HHHHHhhcCCce-EEEeec--CchhHHHHHHHHHHHHhCC-----CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 621 RFRHFVTSPGMA-VVLFCS--KAEHKQVLQLMEQVCKRFP-----SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 621 ~~~~~l~~~~~~-vv~f~~--cg~c~~~~~~~~~l~~~~p-----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
.+..+....+.. ++.|++ |++|+.+.|.+++++..++ ++.++.||+++.+.++..++|.++||+++|++|+.
T Consensus 125 ~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~ 204 (226)
T 1a8l_A 125 TKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGED 204 (226)
T ss_dssp HHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEE
T ss_pred HHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCce
Confidence 444444445666 778998 9999999999999998875 79999999999999999999999999999999999
Q ss_pred eeeecCC-CHHHHHHHHHhhh
Q 005125 693 VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+.++.|. +.+.|.++|+++.
T Consensus 205 ~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 205 RVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp EEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEcCCCCHHHHHHHHHHhh
Confidence 9999999 8899999998764
No 285
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=98.94 E-value=2.3e-09 Score=93.44 Aligned_cols=86 Identities=10% Similarity=0.170 Sum_probs=77.5
Q ss_pred hcCCceEEEeec--CchhHHHHHHHH--HHHHhC-CCcEEEEEeC---CCcHhhHHHcCC---CcccEEEEE-ECCeEee
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQLME--QVCKRF-PSVNFLKVEV---EDHPYIAKSEGV---SSIPAFKIY-KNGSRVK 694 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~~~--~l~~~~-p~~~~~~v~~---d~~~~~~~~~~v---~~~Pt~~~~-~~g~~~~ 694 (713)
.....+++.|++ |++|+.+.|.|+ ++...+ +++.++.||+ +..+.++..++| .++||+++| ++|+.+.
T Consensus 27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~ 106 (133)
T 3fk8_A 27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRY 106 (133)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEE
T ss_pred hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEE
Confidence 456778888999 999999999999 888877 5799999999 999999999999 999999999 8999999
Q ss_pred eecC-------C-CHHHHHHHHHhhh
Q 005125 695 EIPG-------H-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g-------~-~~~~~~~~~~~~~ 712 (713)
+..| . +.+.|.++|++..
T Consensus 107 ~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 107 TTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp ECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred EecCCcccccccCCHHHHHHHHHHhc
Confidence 9998 4 8999999998764
No 286
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=98.94 E-value=2.9e-09 Score=91.22 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=82.4
Q ss_pred eeecchhHHHHHhhc--CCceEEEeec---------CchhHHHHHHHHHHHHhCC-CcEEEEEeC-------CCcHhhHH
Q 005125 614 VFVSSNERFRHFVTS--PGMAVVLFCS---------KAEHKQVLQLMEQVCKRFP-SVNFLKVEV-------EDHPYIAK 674 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~--~~~~vv~f~~---------cg~c~~~~~~~~~l~~~~p-~~~~~~v~~-------d~~~~~~~ 674 (713)
..+.+.+.|...+.. ...+++.|++ |++|+.+.|.|+++.+.++ ++.|+.||+ +..+.++.
T Consensus 7 v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~ 86 (123)
T 1wou_A 7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK 86 (123)
T ss_dssp EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred EEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHH
Confidence 344567788887765 5566666764 8999999999999999985 799999999 78899999
Q ss_pred HcCCCcccEEEEEECCeEeeeecCCCHHHHHHHHHh
Q 005125 675 SEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKL 710 (713)
Q Consensus 675 ~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~~~ 710 (713)
.++|.++||+++|.+|.++....|.+++.|.++|++
T Consensus 87 ~~~i~~~Pt~~~~~~~~~~~g~~~~~~~~l~~~i~~ 122 (123)
T 1wou_A 87 NLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE 122 (123)
T ss_dssp HHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred HCCCCeeCEEEEEcCCceEeccccCCHHHHHHHHhc
Confidence 999999999999999888877778889999999875
No 287
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=98.93 E-value=1.9e-09 Score=87.98 Aligned_cols=74 Identities=4% Similarity=0.095 Sum_probs=66.4
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHH
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKS 707 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 707 (713)
..+++|++ |++|+.+.++++++++.++ +.|.+||+++.++++..++++ +|++++|.+|+.+. .|. ++++|+++
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v~--~g~~~~~~L~~~ 105 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKELC--HYFLDSDVIGAY 105 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEEE--CSSCCCHHHHHH
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEEE--ecCCCHHHHHHH
Confidence 46788888 9999999999999998885 999999999999999999997 99999999999873 465 89999998
Q ss_pred H
Q 005125 708 V 708 (713)
Q Consensus 708 ~ 708 (713)
|
T Consensus 106 L 106 (107)
T 2fgx_A 106 L 106 (107)
T ss_dssp H
T ss_pred h
Confidence 7
No 288
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=98.93 E-value=2.1e-09 Score=85.29 Aligned_cols=77 Identities=26% Similarity=0.402 Sum_probs=69.8
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHH
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEK 706 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 706 (713)
..++.|++ |++|+.+.|.++++.+.++ ++.++.+|+++.+.++..++|.++||+++ +|+. ++.|. +.++|.+
T Consensus 4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~ 79 (85)
T 1fo5_A 4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALVE 79 (85)
T ss_dssp EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHHH
T ss_pred eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHHH
Confidence 45777888 9999999999999999986 79999999999999999999999999988 8876 78888 9999999
Q ss_pred HHHhh
Q 005125 707 SVKLY 711 (713)
Q Consensus 707 ~~~~~ 711 (713)
+|+++
T Consensus 80 ~l~~~ 84 (85)
T 1fo5_A 80 AIKKR 84 (85)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
No 289
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.91 E-value=4e-09 Score=86.70 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=67.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 288 INSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 288 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
.+|+++.+++.+|.+|...|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|++++. +.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE-VAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hhhcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999 76643
No 290
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=98.91 E-value=2e-09 Score=84.79 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=62.1
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
.+++|++ |++|+++.|+|+++...+ +.+||+++.+.++..++++ +|++++ .+|+.+. |. ++++|.++|
T Consensus 2 ~vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l 72 (87)
T 1ttz_A 2 ALTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWL 72 (87)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHH
Confidence 4677888 999999999999876543 6899999999999999998 999988 8898885 66 999999999
Q ss_pred Hhh
Q 005125 709 KLY 711 (713)
Q Consensus 709 ~~~ 711 (713)
+++
T Consensus 73 ~~~ 75 (87)
T 1ttz_A 73 DAA 75 (87)
T ss_dssp HTC
T ss_pred HHH
Confidence 875
No 291
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.88 E-value=1.2e-08 Score=109.03 Aligned_cols=136 Identities=10% Similarity=-0.040 Sum_probs=106.3
Q ss_pred HHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 005125 410 AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI-----DPNNKEVI 484 (713)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 484 (713)
+..+...|+|++|+..|++++++....... .....+..+.++|.+|..+|+|++|+.++++++++ .|+++...
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~--~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFAD--TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCT--TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 445667788888888888877542211000 00124668999999999999999999999999975 67777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH-----EAYN---SVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
. .+.++|.+|..+|+|++|+..|++|+++ .|++ .....+++.++..++.+++|...|.++.+.
T Consensus 394 ~---------~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 394 M---------AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp H---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4558999999999999999999999975 4555 556789999999999999999999988653
No 292
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=98.88 E-value=2.8e-09 Score=91.16 Aligned_cols=91 Identities=16% Similarity=0.283 Sum_probs=76.4
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC------CcEEEEEeCCCcHhhHHHcCCCcccEEEEEEC
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP------SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p------~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~ 689 (713)
...|...+ .....+++.|++ |++|+.+.|.|+++++.++ .+.|+.||++..+ ++. +|.++||+++|.+
T Consensus 14 ~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~Pt~~~~~~ 90 (121)
T 2djj_A 14 AKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGFPTIKLYPA 90 (121)
T ss_dssp TTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSSSEEEEECS
T ss_pred ccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcCCeEEEEeC
Confidence 35666664 455678888998 9999999999999998875 5899999999877 444 9999999999998
Q ss_pred CeE--eeeecCC-CHHHHHHHHHhhh
Q 005125 690 GSR--VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 690 g~~--~~~~~g~-~~~~~~~~~~~~~ 712 (713)
|.. +.++.|. +.+.|.++|+++.
T Consensus 91 ~~~~~~~~~~G~~~~~~l~~~i~~~~ 116 (121)
T 2djj_A 91 GAKGQPVTYSGSRTVEDLIKFIAENG 116 (121)
T ss_dssp SCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred cCCCCceEecCCCCHHHHHHHHHhcc
Confidence 865 7889998 9999999998764
No 293
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.87 E-value=1.4e-09 Score=94.80 Aligned_cols=93 Identities=15% Similarity=0.248 Sum_probs=77.3
Q ss_pred hHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 620 ERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 620 ~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
..|...+.. ...+++.|++ |++|+.+.|.|+++++.+ +.+.|+.||++..+.++..++|.++||+++|.+|..+
T Consensus 15 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 94 (133)
T 2dj3_A 15 KTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKK 94 (133)
T ss_dssp TTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEEECTTCTT
T ss_pred CCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEEEeCCCcc
Confidence 456655543 5667778888 999999999999999887 4699999999999999999999999999999988765
Q ss_pred e--eec-CC-CHHHHHHHHHhhh
Q 005125 694 K--EIP-GH-QCELLEKSVKLYS 712 (713)
Q Consensus 694 ~--~~~-g~-~~~~~~~~~~~~~ 712 (713)
. .+. |. +.+.|.++|+++.
T Consensus 95 ~~~~~~gg~~~~~~l~~~l~~~~ 117 (133)
T 2dj3_A 95 NPIKFEGGNRDLEHLSKFIDEHA 117 (133)
T ss_dssp SCEECCSSCCSTTHHHHHHHHHS
T ss_pred cceEecCCCcCHHHHHHHHHHhc
Confidence 4 355 64 8999999998763
No 294
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.85 E-value=8.7e-09 Score=100.18 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=84.7
Q ss_pred cceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 612 NLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
.+..+ +...|...+.....+++.|++ |++|+.+.|.++++++.++ .+.++.||++..+.++..++|.++||++
T Consensus 16 ~v~~l-~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~ 94 (241)
T 3idv_A 16 GVLVL-NDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIK 94 (241)
T ss_dssp TEEEE-CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred CcEEe-cccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEE
Confidence 34433 456788888777888888999 9999999999999998763 3999999999999999999999999999
Q ss_pred EEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 686 IYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 686 ~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|++|+.+. +.|. +.+.|.++|++.
T Consensus 95 ~~~~g~~~~-~~g~~~~~~l~~~i~~~ 120 (241)
T 3idv_A 95 ILKKGQAVD-YEGSRTQEEIVAKVREV 120 (241)
T ss_dssp EEETTEEEE-CCSCSCHHHHHHHHHHH
T ss_pred EEcCCCccc-ccCcccHHHHHHHHhhc
Confidence 999999884 7777 999999999875
No 295
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=98.82 E-value=4.8e-09 Score=94.46 Aligned_cols=81 Identities=5% Similarity=-0.029 Sum_probs=68.0
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcC---CCcccEEEEEEC-CeEeeeecCCCHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEG---VSSIPAFKIYKN-GSRVKEIPGHQCEL 703 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~---v~~~Pt~~~~~~-g~~~~~~~g~~~~~ 703 (713)
+.+++.|++ ||+|+.+.|.++++++.++++.|+.|++|+.++++..++ |.++||+++|.+ |+.+.++ |..+..
T Consensus 55 k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~-g~~p~~ 133 (167)
T 1z6n_A 55 RYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRF-VERPQA 133 (167)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEE-ESSCHH
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCEEEEE-cCCCHH
Confidence 456777999 999999999999999999999999999999999998887 999999999997 4777777 555556
Q ss_pred HHHHHHhh
Q 005125 704 LEKSVKLY 711 (713)
Q Consensus 704 ~~~~~~~~ 711 (713)
+.+.|+++
T Consensus 134 ~~~~i~~~ 141 (167)
T 1z6n_A 134 VLDGGPQA 141 (167)
T ss_dssp HHHHCHHH
T ss_pred HHHhHHHH
Confidence 66665543
No 296
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.82 E-value=1.2e-08 Score=99.26 Aligned_cols=95 Identities=22% Similarity=0.313 Sum_probs=83.9
Q ss_pred cchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 617 SSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 617 ~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
.+.+.|...+.....+++.|++ |++|+.+.|.+.+++..+ +.+.|+.||++..+.++..++|.++||+++|++|
T Consensus 135 ~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 214 (241)
T 3idv_A 135 LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG 214 (241)
T ss_dssp CCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECC
Confidence 3456777777777788888999 999999999999998765 4599999999999999999999999999999999
Q ss_pred eEeeeecCC-CHHHHHHHHHhhh
Q 005125 691 SRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 691 ~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+.+. +.|. +.+.|.+||.+..
T Consensus 215 ~~~~-~~g~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 215 RPYD-YNGPREKYGIVDYMIEQS 236 (241)
T ss_dssp EEEE-CCSCCSHHHHHHHHHHHT
T ss_pred eEEE-ecCCCCHHHHHHHHHhhh
Confidence 9888 7888 9999999998764
No 297
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=98.29 E-value=5.3e-10 Score=93.07 Aligned_cols=91 Identities=26% Similarity=0.454 Sum_probs=78.7
Q ss_pred HHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeee
Q 005125 621 RFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEI 696 (713)
Q Consensus 621 ~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 696 (713)
.|...+ ...+..++.|++ |+.|+.+.|.++++.+.++ ++.++.+|++..+.++..++|.++|++++|++|+.+.++
T Consensus 10 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 89 (106)
T 2yj7_A 10 NFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRL 89 (106)
Confidence 444333 445567777888 9999999999999998886 699999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHHhh
Q 005125 697 PGH-QCELLEKSVKLY 711 (713)
Q Consensus 697 ~g~-~~~~~~~~~~~~ 711 (713)
.|. +.+.|.++|++.
T Consensus 90 ~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 90 VGAQPKEALKERIDKH 105 (106)
Confidence 999 889999998764
No 298
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=98.79 E-value=2e-08 Score=95.85 Aligned_cols=93 Identities=12% Similarity=0.216 Sum_probs=79.9
Q ss_pred chhHHHHHhhcCCceEEEeec-CchhHHHHHHHHHHHHhC---CCcEEEEEeCCC-----cHhhHHHcCCC--cccEEEE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS-KAEHKQVLQLMEQVCKRF---PSVNFLKVEVED-----HPYIAKSEGVS--SIPAFKI 686 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~-cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~-----~~~~~~~~~v~--~~Pt~~~ 686 (713)
+..+|...+.....++|.|++ |+.|. +.|.|++++..+ +++.|+.||+++ .+.++..++|. ++|||.+
T Consensus 11 t~~nF~~~i~~~~~vlV~FyA~~pWCg-l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~PTl~~ 89 (240)
T 2qc7_A 11 DTVTFYKVIPKSKFVLVKFDTQYPYGE-KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYL 89 (240)
T ss_dssp CTTHHHHHGGGCSEEEEEECCSSCCSH-HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGCSEEEE
T ss_pred CHHHHHHHHcCCCCEEEEEeCCCCCCc-chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCCCEEEE
Confidence 446788877777788888998 66666 999999999876 579999999665 89999999999 9999999
Q ss_pred EECCe--EeeeecCC-CHHHHHHHHHhh
Q 005125 687 YKNGS--RVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 687 ~~~g~--~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|++|+ .+.++.|. +.+.|.+||++.
T Consensus 90 f~~G~~~~~~~y~G~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 90 FRDGDFENPVPYTGAVKVGAIQRWLKGQ 117 (240)
T ss_dssp EETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred EeCCCcCcceeecCCCCHHHHHHHHHHh
Confidence 99998 46788888 999999999875
No 299
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.79 E-value=3.6e-07 Score=87.68 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHhccCCCC-HHHHHHHH
Q 005125 463 FEDAVKTAQDAAQIDPN--NKEVIKGVKMAKAMASARLRGNLLFKA-----SKYKEACYAYSEGLEHEAYN-SVLLCNRA 534 (713)
Q Consensus 463 ~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la 534 (713)
..+|...++++++++|+ +..+|. .+|.+|... |+.++|..+|++|++++|+. ..+++..|
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~------------~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA 246 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWN------------VLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYA 246 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHH------------HHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHH------------HHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 57899999999999999 555776 599999985 99999999999999999975 99999999
Q ss_pred HHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 005125 535 ACRSK-LGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 535 ~~~~~-~g~~~~A~~~~~~al~~~p~~ 560 (713)
..+.. .|++++|..++++++..+|..
T Consensus 247 ~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 247 DALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99988 599999999999999988873
No 300
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.79 E-value=2e-08 Score=108.51 Aligned_cols=95 Identities=20% Similarity=0.373 Sum_probs=86.3
Q ss_pred chhHHHHHhhcC---CceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSP---GMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~---~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+...|...+... ..+++.|++ |++|+.+.|.+++++..+++ +.|+.||++..+.++..++|.++||+++|++|+
T Consensus 7 ~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~g~ 86 (481)
T 3f8u_A 7 TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGE 86 (481)
T ss_dssp CTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEEEETTE
T ss_pred cHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCc
Confidence 456788888666 788888999 99999999999999999865 999999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
.+.++.|. +.+.|.+||.+..
T Consensus 87 ~~~~~~G~~~~~~l~~~~~~~~ 108 (481)
T 3f8u_A 87 EAGAYDGPRTADGIVSHLKKQA 108 (481)
T ss_dssp EEEECCSCSSHHHHHHHHHHHT
T ss_pred eeeeecCccCHHHHHHHHHhhc
Confidence 99999998 9999999998753
No 301
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.2e-08 Score=88.37 Aligned_cols=85 Identities=22% Similarity=0.252 Sum_probs=73.2
Q ss_pred cCCceEEEeec--CchhHHHHHHH---HHHHHhC-CCcEEEEEeCC--CcHhhHHHcCCCcccEEEEE-ECCeEeeeecC
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLM---EQVCKRF-PSVNFLKVEVE--DHPYIAKSEGVSSIPAFKIY-KNGSRVKEIPG 698 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~-p~~~~~~v~~d--~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g 698 (713)
....+++.|++ |++|+.+.|.+ +.+.+.+ ..+.++.||++ ..+.++..++|.++||+++| ++|+.+.++.|
T Consensus 26 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G 105 (130)
T 2kuc_A 26 EDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVG 105 (130)
T ss_dssp HSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEEEEEES
T ss_pred cCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEEEEecC
Confidence 45677888888 99999999998 6666554 35889999998 57899999999999999999 68999999999
Q ss_pred C-CHHHHHHHHHhhh
Q 005125 699 H-QCELLEKSVKLYS 712 (713)
Q Consensus 699 ~-~~~~~~~~~~~~~ 712 (713)
. +.+.|.++|+++.
T Consensus 106 ~~~~~~l~~~l~~~~ 120 (130)
T 2kuc_A 106 AEDAPELLKKVKLGV 120 (130)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 9 8999999998764
No 302
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=98.78 E-value=2e-08 Score=104.67 Aligned_cols=93 Identities=22% Similarity=0.389 Sum_probs=82.9
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-------CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEEC
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-------PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-------p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~ 689 (713)
...|...+.....+++.|++ |++|+.+.|.+++++..+ +.+.|+.||++..+.++..++|.++||+.+|++
T Consensus 12 ~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~~ 91 (382)
T 2r2j_A 12 TENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRN 91 (382)
T ss_dssp TTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEEEEEET
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEEEEEeC
Confidence 45787777777888888999 999999999999998765 239999999999999999999999999999999
Q ss_pred CeEee-eecCC-CHHHHHHHHHhh
Q 005125 690 GSRVK-EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 690 g~~~~-~~~g~-~~~~~~~~~~~~ 711 (713)
|+.+. .+.|. +.+.|.+||.+.
T Consensus 92 G~~~~~~~~G~~~~~~l~~~i~~~ 115 (382)
T 2r2j_A 92 GMMMKREYRGQRSVKALADYIRQQ 115 (382)
T ss_dssp TEEEEEECCSCCSHHHHHHHHHHH
T ss_pred CcEeeeeecCcchHHHHHHHHHHh
Confidence 99987 48898 999999999875
No 303
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=98.78 E-value=4e-08 Score=98.11 Aligned_cols=94 Identities=12% Similarity=0.184 Sum_probs=80.9
Q ss_pred chhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCC--CcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVE--DHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d--~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+..+|...+.. ...+++.|++ |++|+.+.|.++++++.+++ +.++.|++| ..+.++..++|.++||+++|++|+
T Consensus 23 t~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 23 TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPK 102 (298)
T ss_dssp CHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECCC
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEEECCc
Confidence 45788888854 4568888999 99999999999999999864 888888887 689999999999999999999987
Q ss_pred -----------------EeeeecCC-CHHHHHHHHHhh
Q 005125 692 -----------------RVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 692 -----------------~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.+..+.|. +.+.|.+||.+.
T Consensus 103 ~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~ 140 (298)
T 3ed3_A 103 IDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSR 140 (298)
T ss_dssp C-------------CCCEEEECCSCCSHHHHHHHHHTT
T ss_pred eeecccccccccccccccceeecCCcCHHHHHHHHHHh
Confidence 35677888 999999999765
No 304
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=98.77 E-value=2.7e-08 Score=96.77 Aligned_cols=99 Identities=9% Similarity=0.159 Sum_probs=80.6
Q ss_pred cceeecchhHHHHHhhcC-CceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeC--CCcHhhHHHcCCCccc
Q 005125 612 NLVFVSSNERFRHFVTSP-GMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEV--EDHPYIAKSEGVSSIP 682 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~--d~~~~~~~~~~v~~~P 682 (713)
.+..+ +...|...+... ..+++.|++ |++|+.+.|.++++++.++ .+.|+.||+ +..+.++..++|.++|
T Consensus 13 ~v~~l-~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~P 91 (244)
T 3q6o_A 13 PLTLL-QADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFP 91 (244)
T ss_dssp SSEEE-CTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSS
T ss_pred CceeC-ChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccC
Confidence 33433 345677766444 677778999 9999999999999999885 599999999 7789999999999999
Q ss_pred EEEEEECCeEee-----eecCCCHHHHHHHHHhh
Q 005125 683 AFKIYKNGSRVK-----EIPGHQCELLEKSVKLY 711 (713)
Q Consensus 683 t~~~~~~g~~~~-----~~~g~~~~~~~~~~~~~ 711 (713)
|+++|..|+.++ .+.|.+.+.|.++|.++
T Consensus 92 t~~~~~~g~~~~~g~~~~~~g~~~~~l~~~i~~~ 125 (244)
T 3q6o_A 92 TVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDA 125 (244)
T ss_dssp EEEEECTTCCSSSCEECCCTTCCHHHHHHHHHHH
T ss_pred EEEEEeCCCcCCCCeeEecCCCCHHHHHHHHHHH
Confidence 999999854433 67777999999998765
No 305
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=98.72 E-value=3e-08 Score=94.86 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=76.8
Q ss_pred chhHHHHHhhcCCceEEEee--c--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCC-----cHhhHHHcCCC--ccc
Q 005125 618 SNERFRHFVTSPGMAVVLFC--S--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVED-----HPYIAKSEGVS--SIP 682 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~--~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~-----~~~~~~~~~v~--~~P 682 (713)
+..+|...+.....++|.|+ + || +.|.|++++..+ +.+.|++||+++ ++.++..++|. ++|
T Consensus 22 t~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~~~~P 97 (248)
T 2c0g_A 22 DELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFP 97 (248)
T ss_dssp CTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCC
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCcCCCC
Confidence 45678887777778888899 5 77 999999999876 579999999998 89999999999 999
Q ss_pred EEEEEECCeE--eeee--cCC-CHHHHHHHHHhhh
Q 005125 683 AFKIYKNGSR--VKEI--PGH-QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~~g~~--~~~~--~g~-~~~~~~~~~~~~~ 712 (713)
||++|+ |.. +..+ .|. +.+.|.+||++..
T Consensus 98 Tl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~ 131 (248)
T 2c0g_A 98 SIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANT 131 (248)
T ss_dssp EEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred eEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhh
Confidence 999999 873 5556 777 9999999998763
No 306
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.72 E-value=4.1e-08 Score=106.65 Aligned_cols=98 Identities=12% Similarity=0.293 Sum_probs=87.4
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+ +..+|...+.....+++.|++ ||+|+.+.|.+++++..+. ++.|+.||++..+.++..++|.++||+++|+
T Consensus 16 v~~l-~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 94 (504)
T 2b5e_A 16 VVKL-ATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFK 94 (504)
T ss_dssp CEEC-CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cEEC-CHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEe
Confidence 4443 456788888777788888999 9999999999999999885 4999999999999999999999999999999
Q ss_pred CCeE--eeeecCC-CHHHHHHHHHhh
Q 005125 689 NGSR--VKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~--~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|+. +.++.|. +.+.|.+||.+.
T Consensus 95 ~g~~~~~~~~~G~~~~~~l~~~l~~~ 120 (504)
T 2b5e_A 95 NSDVNNSIDYEGPRTAEAIVQFMIKQ 120 (504)
T ss_dssp TTCTTCEEECCSCCSHHHHHHHHHHH
T ss_pred CCccccceeecCCCCHHHHHHHHHHh
Confidence 9997 8889998 999999999865
No 307
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.72 E-value=1.8e-07 Score=81.80 Aligned_cols=110 Identities=9% Similarity=0.044 Sum_probs=51.5
Q ss_pred hcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH--
Q 005125 382 KRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA-- 459 (713)
Q Consensus 382 ~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-- 459 (713)
+++++|+..|+++.+.+.... . +|.+|...+..++|+.+|+++.+. .++.+++++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a---~--lg~~y~~g~~~~~A~~~~~~Aa~~------------g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG---C--LSLVSNSQINKQKLFQYLSKACEL------------NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH---H--HHHHTCTTSCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHcCCCHhh---h--HHHHHHcCCCHHHHHHHHHHHHcC------------CCHHHHHHHHHHHHcCC
Confidence 345555555555555543321 1 455555444555555555554432 123344445555544
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhcc
Q 005125 460 --AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEH 522 (713)
Q Consensus 460 --~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 522 (713)
.+++++|+.+|+++.+. .++.+.. ++|.+|.. .+++++|+.+|+++.+.
T Consensus 72 g~~~d~~~A~~~~~~Aa~~--g~~~a~~------------~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL--NDQDGCL------------ILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHH------------HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHcC--CCHHHHH------------HHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 44555555555555443 2333333 34544444 44555555555554443
No 308
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.72 E-value=2.1e-07 Score=93.32 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=62.4
Q ss_pred CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 398 GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 398 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
+|.. +.++..++..+...|++++|+..+++|+.++|. ...+..+|.++...|++++|++.|++|+.++
T Consensus 273 ~~~~-a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-----------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 273 LNNL-SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-----------WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp GTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3444 478888888888899999999999999998863 3467889999999999999999999999999
Q ss_pred CCCHH
Q 005125 478 PNNKE 482 (713)
Q Consensus 478 p~~~~ 482 (713)
|....
T Consensus 341 P~~~t 345 (372)
T 3ly7_A 341 PGANT 345 (372)
T ss_dssp CSHHH
T ss_pred CCcCh
Confidence 98753
No 309
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.71 E-value=1.2e-07 Score=82.98 Aligned_cols=112 Identities=12% Similarity=0.025 Sum_probs=98.1
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASA 496 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 496 (713)
+++++|+.+|+++.+... +.+. +|.+|...+.+++|+.+|+++.+. .++.+..
T Consensus 9 ~d~~~A~~~~~~aa~~g~------------~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~----------- 61 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE------------MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCR----------- 61 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC------------TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHH-----------
T ss_pred cCHHHHHHHHHHHHcCCC------------Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHH-----------
Confidence 578999999999987542 2233 899999999999999999999986 5677776
Q ss_pred HHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 005125 497 RLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMP 558 (713)
Q Consensus 497 ~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 558 (713)
++|.+|.. .+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+...
T Consensus 62 -~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 62 -FLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp -HHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 79999998 89999999999999987 689999999999999 9999999999999998743
No 310
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=98.71 E-value=4.5e-08 Score=94.20 Aligned_cols=89 Identities=10% Similarity=0.054 Sum_probs=77.0
Q ss_pred hHHHHHhhcCCce-EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeee
Q 005125 620 ERFRHFVTSPGMA-VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEI 696 (713)
Q Consensus 620 ~~~~~~l~~~~~~-vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 696 (713)
..|...+...+.. ++.|++ |++|+.+.|.+++++..++++.++.||++..+.++..++|.++||+++ +|+ +.++
T Consensus 126 ~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~~~~ 202 (229)
T 2ywm_A 126 KTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-VAEF 202 (229)
T ss_dssp HHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-TEEE
T ss_pred HHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-EEEe
Confidence 4555555455555 566888 999999999999999999899999999999999999999999999988 888 7778
Q ss_pred cCC-CHHHHHHHHHhh
Q 005125 697 PGH-QCELLEKSVKLY 711 (713)
Q Consensus 697 ~g~-~~~~~~~~~~~~ 711 (713)
.|. +.+.|.++|++.
T Consensus 203 ~G~~~~~~l~~~l~~~ 218 (229)
T 2ywm_A 203 VGAQPENAFLGYIMAV 218 (229)
T ss_dssp ESCCCHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHH
Confidence 998 889999999765
No 311
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.69 E-value=9.4e-08 Score=95.88 Aligned_cols=139 Identities=8% Similarity=-0.057 Sum_probs=101.5
Q ss_pred CCCCH--HHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHH-HHHH--H
Q 005125 255 NKLDP--EELKFMGNEAYNKA---RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQ-------IEALV-ECKE--A 319 (713)
Q Consensus 255 ~~~~~--~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~A~~-~~~~--a 319 (713)
.|.++ ..++..|..++..+ ++.+|+.+|++|++++|+++.++..++.+|.....+ .+++. .++. +
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 44444 34667788777654 458999999999999999999999888888632111 11111 1221 2
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
+..+|..+.++..+|..+...|++++|+..+++++. ++|.. ..+..++..+...|++++|++.|.+++.++|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln~s~-------~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID-LEMSW-------LNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 355788899999999999989999999999999999 88652 3455666777777777777777777777777
Q ss_pred CC
Q 005125 400 DS 401 (713)
Q Consensus 400 ~~ 401 (713)
..
T Consensus 342 ~~ 343 (372)
T 3ly7_A 342 GA 343 (372)
T ss_dssp SH
T ss_pred Cc
Confidence 65
No 312
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=98.67 E-value=1.1e-08 Score=92.53 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=83.3
Q ss_pred cccccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHh-hHHHcCC--C
Q 005125 606 DMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPY-IAKSEGV--S 679 (713)
Q Consensus 606 ~~~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~-~~~~~~v--~ 679 (713)
..++|..+......+.+.........+++.|++ |++|+.+.|.|.++.+.+ .++.|+.|+++..+. ++..+++ .
T Consensus 23 ~~~~~~~i~w~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~ 102 (164)
T 1sen_A 23 GKGFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGG 102 (164)
T ss_dssp CTTSCTTSCBCCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCS
T ss_pred cccccccccccCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCC
Confidence 345666666654445666666667888888999 999999999999876554 247788888888776 7888888 6
Q ss_pred cccEEEEE-ECCeEeeeecC-----------CCHHHHHHHHHhh
Q 005125 680 SIPAFKIY-KNGSRVKEIPG-----------HQCELLEKSVKLY 711 (713)
Q Consensus 680 ~~Pt~~~~-~~g~~~~~~~g-----------~~~~~~~~~~~~~ 711 (713)
++||++|| ++|+.+.++.| .+.++|.++|+++
T Consensus 103 ~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~ 146 (164)
T 1sen_A 103 YIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEA 146 (164)
T ss_dssp CSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHH
Confidence 69999999 79999999998 3778888888765
No 313
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.66 E-value=1.6e-07 Score=75.28 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 255 NKLDPEELKFMGNEAYNKAR---FEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY 326 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 326 (713)
+|.+++.+..+|.+++..++ .++|..+++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46777777777777765554 5777777777777777777777777777777777777777777777777663
No 314
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=98.65 E-value=9.7e-08 Score=98.69 Aligned_cols=93 Identities=14% Similarity=0.256 Sum_probs=79.5
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHH------HHHHHHHHhC--CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVL------QLMEQVCKRF--PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~------~~~~~l~~~~--p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+|...+.....+++.|++ ||+|.... |.++.++..+ .++.|++||++..+.++..++|.++||+.+|
T Consensus 19 t~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~f 98 (367)
T 3us3_A 19 NAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVF 98 (367)
T ss_dssp CTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCSTTEEEEE
T ss_pred CHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCcCceEEEE
Confidence 456788888778888999999 99974433 5788888765 2599999999999999999999999999999
Q ss_pred ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 688 KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++|+.+ .+.|. +.+.|.+||.+.
T Consensus 99 ~~G~~~-~y~G~~~~~~i~~~i~~~ 122 (367)
T 3us3_A 99 KEDEVI-EYDGEFSADTLVEFLLDV 122 (367)
T ss_dssp ETTEEE-ECCSCCSHHHHHHHHHHH
T ss_pred ECCcEE-EeCCCCCHHHHHHHHHHh
Confidence 999876 67788 999999999875
No 315
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=98.65 E-value=7.2e-08 Score=99.23 Aligned_cols=92 Identities=14% Similarity=0.276 Sum_probs=81.2
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHH-------HHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCcccEEEE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQL-------MEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~-------~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~ 686 (713)
+..+|...+.....+++.|++ || |+.+.|. ++++++.+. ++.++.||++..+.++..++|.++||+.+
T Consensus 17 ~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~ 95 (350)
T 1sji_A 17 TEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYV 95 (350)
T ss_dssp CHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCSTTEEEE
T ss_pred CHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCccceEEE
Confidence 457788888777888888999 99 9888777 888887763 59999999999999999999999999999
Q ss_pred EECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 687 YKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 687 ~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|++|+ +.++.|. +.+.|.+||.+.
T Consensus 96 ~~~g~-~~~~~G~~~~~~l~~~i~~~ 120 (350)
T 1sji_A 96 LKGDR-TIEFDGEFAADVLVEFLLDL 120 (350)
T ss_dssp EETTE-EEEECSCCCHHHHHHHHHTT
T ss_pred EECCc-EEEecCCCCHHHHHHHHHHh
Confidence 99999 5688898 999999999875
No 316
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=98.63 E-value=2.3e-08 Score=88.08 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=68.8
Q ss_pred ccccccceeecch-hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHH--hCCCcEEEEEeCC-CcHhhHHHcCCCc
Q 005125 607 MKFGSNLVFVSSN-ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCK--RFPSVNFLKVEVE-DHPYIAKSEGVSS 680 (713)
Q Consensus 607 ~~~g~~i~~~~~~-~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~--~~p~~~~~~v~~d-~~~~~~~~~~v~~ 680 (713)
.+||..+....+. +.+........++++.|++ |++|+.+.|.+.+..+ .+.+..|+.|++| +.+.++..++|.+
T Consensus 21 ~~~~~~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~ 100 (151)
T 3ph9_A 21 RGWGDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQY 100 (151)
T ss_dssp TTSCTTSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCC
T ss_pred ccccCCCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCC
Confidence 5678887776433 3445555667888888999 9999999999886421 1222345555554 4556778899999
Q ss_pred ccEEEEEE-CCeEeeeecCC
Q 005125 681 IPAFKIYK-NGSRVKEIPGH 699 (713)
Q Consensus 681 ~Pt~~~~~-~g~~~~~~~g~ 699 (713)
+||++||. +|+.+.++.|.
T Consensus 101 ~PT~~f~~~~G~~v~~~~G~ 120 (151)
T 3ph9_A 101 VPRIMFVDPSLTVRADIAGR 120 (151)
T ss_dssp SSEEEEECTTSCBCTTCCCS
T ss_pred CCEEEEECCCCCEEEEEeCC
Confidence 99999999 99999999996
No 317
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=98.07 E-value=3.6e-09 Score=91.80 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=73.7
Q ss_pred HhhcCCceEEEeec--CchhHHHHHHH---HHHHHhCC-CcEEEEEeC--CCcHhhHHHcCCCcccEEEEE--ECCeE--
Q 005125 625 FVTSPGMAVVLFCS--KAEHKQVLQLM---EQVCKRFP-SVNFLKVEV--EDHPYIAKSEGVSSIPAFKIY--KNGSR-- 692 (713)
Q Consensus 625 ~l~~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~p-~~~~~~v~~--d~~~~~~~~~~v~~~Pt~~~~--~~g~~-- 692 (713)
.......+++.|++ |++|+.+.|.+ +++.+.++ .+.++.||+ ++.+.++..++|.++||+++| ++|+.
T Consensus 15 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~ 94 (130)
T 2lst_A 15 AQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEE 94 (130)
Confidence 33445567777888 99999999999 88888775 488999998 467889999999999999999 67988
Q ss_pred eeeecCC-CHHHHHHHHHhh
Q 005125 693 VKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~~~~ 711 (713)
+.++.|. +.+.|.++|+++
T Consensus 95 ~~~~~G~~~~~~l~~~l~~~ 114 (130)
T 2lst_A 95 VGRLFGSRPRAEFLKELRQV 114 (130)
Confidence 8999998 889999998875
No 318
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=98.61 E-value=1.3e-07 Score=90.72 Aligned_cols=93 Identities=13% Similarity=0.161 Sum_probs=75.3
Q ss_pred hhHHHHHh-h--cCCceEEEeec---CchhHHHHHHHHHHHHhCCCcEEEEEeCCC--cHhhHHHcCCCcccEEEEEECC
Q 005125 619 NERFRHFV-T--SPGMAVVLFCS---KAEHKQVLQLMEQVCKRFPSVNFLKVEVED--HPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 619 ~~~~~~~l-~--~~~~~vv~f~~---cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~--~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
.+.+...+ . .....+++|++ |++|+.+.|.++++++..+.+.|+.||+++ .+.++..++|.++||+.+|++|
T Consensus 9 ~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g 88 (226)
T 1a8l_A 9 KKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDG 88 (226)
T ss_dssp HHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETT
T ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCC
Confidence 34455555 2 23344566765 999999999999999877889999999999 9999999999999999999999
Q ss_pred eEe-eeecCC-CHHHHHHHHHhh
Q 005125 691 SRV-KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~-~~~~g~-~~~~~~~~~~~~ 711 (713)
+.+ .++.|. +.+.+.+++...
T Consensus 89 ~~~~~~~~G~~~~~~l~~~l~~~ 111 (226)
T 1a8l_A 89 KDFGVRYFGLPAGHEFAAFLEDI 111 (226)
T ss_dssp BCCSEEEESCCCTTHHHHHHHHH
T ss_pred ceeeEEEeccCcHHHHHHHHHHH
Confidence 875 678888 778888887653
No 319
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.59 E-value=3.1e-07 Score=73.59 Aligned_cols=72 Identities=19% Similarity=0.163 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 289 NSSKATYRSNKSAALIGLGR---QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+.+|++++. .+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~-~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD-SNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-CCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCC
Confidence 68999999999999987766 79999999999999999999999999999999999999999999999 88873
No 320
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.58 E-value=2.6e-07 Score=80.49 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=73.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC----------------------cHhhHHHcCCCcccEE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED----------------------HPYIAKSEGVSSIPAF 684 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~----------------------~~~~~~~~~v~~~Pt~ 684 (713)
....++.|++ |++|+...|.+.++.+.++++.++.|+.+. ...++..++|.++|++
T Consensus 24 ~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 103 (136)
T 1lu4_A 24 GKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAF 103 (136)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEE
T ss_pred CCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCEE
Confidence 4567777888 999999999999999999899999999987 6788899999999999
Q ss_pred EEE-ECCeEeeeec---CC-CHHHHHHHHHhhh
Q 005125 685 KIY-KNGSRVKEIP---GH-QCELLEKSVKLYS 712 (713)
Q Consensus 685 ~~~-~~g~~~~~~~---g~-~~~~~~~~~~~~~ 712 (713)
+++ ++|+.+ .+. |. +.++|.++|++..
T Consensus 104 ~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 104 VFYRADGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred EEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 999 689888 888 88 9999999998753
No 321
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=98.58 E-value=1.6e-07 Score=83.90 Aligned_cols=85 Identities=11% Similarity=0.107 Sum_probs=71.3
Q ss_pred hcCCceEEEee-c--CchhHHHHHHH---HHHHHhC-CCcEEEEEeCCCcH-----------hhHHHcCCCcccEEEEE-
Q 005125 627 TSPGMAVVLFC-S--KAEHKQVLQLM---EQVCKRF-PSVNFLKVEVEDHP-----------YIAKSEGVSSIPAFKIY- 687 (713)
Q Consensus 627 ~~~~~~vv~f~-~--cg~c~~~~~~~---~~l~~~~-p~~~~~~v~~d~~~-----------~~~~~~~v~~~Pt~~~~- 687 (713)
.....+++.|+ + |++|+.+.|.+ +++.+.+ .++.++.||.+..+ .++..++|.++||++++
T Consensus 45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d 124 (154)
T 2ju5_A 45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFID 124 (154)
T ss_dssp HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEEC
T ss_pred hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEc
Confidence 34567788898 6 99999999999 7776654 56899999998764 88999999999999999
Q ss_pred ECCeEeeeecCC---CHHHHHHHHHhhh
Q 005125 688 KNGSRVKEIPGH---QCELLEKSVKLYS 712 (713)
Q Consensus 688 ~~g~~~~~~~g~---~~~~~~~~~~~~~ 712 (713)
++|+.+.++ |. +.+.+.++|++..
T Consensus 125 ~~G~~~~~~-G~~~~~~~~l~~~l~~~l 151 (154)
T 2ju5_A 125 AEGKQLARM-GFEPGGGAAYVSKVKSAL 151 (154)
T ss_dssp TTCCEEEEE-CCCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEe-cCCCCCHHHHHHHHHHHH
Confidence 789999999 87 4888999988753
No 322
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.57 E-value=5.7e-07 Score=74.08 Aligned_cols=78 Identities=24% Similarity=0.258 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAIN-------SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRA 329 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 329 (713)
-+++.++.+|..++..|+|..|+.+|++|++.. +....++..+|.++.++|++++|+.++++++.++|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 356779999999999999999999999999863 3457889999999999999999999999999999999998
Q ss_pred HHHHH
Q 005125 330 HHRLA 334 (713)
Q Consensus 330 ~~~la 334 (713)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 88876
No 323
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.56 E-value=9.4e-07 Score=84.80 Aligned_cols=114 Identities=12% Similarity=0.095 Sum_probs=99.0
Q ss_pred hhhhHhhcCCCCHHHHHHHHHHHHH---h--c------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CC
Q 005125 247 FPQCISSLNKLDPEELKFMGNEAYN---K--A------RFEDALALYDRAIAINSS--KATYRSNKSAALIGL-----GR 308 (713)
Q Consensus 247 a~~~~~~~~~~~~~~~~~lg~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~ 308 (713)
-...+....|.+++.++-.|..... . | ...+|...++++++++|+ +..+|..+|.+|... |+
T Consensus 140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 3445556889999999888877754 1 2 367899999999999999 677999999999996 99
Q ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhhcccc
Q 005125 309 QIEALVECKEAIRIDPCY-HRAHHRLAMLYFR-LGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 309 ~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~p~~ 361 (713)
.++|..+|+++++++|+. ..+++.+|..+.. .|++++|..++++++. .+|..
T Consensus 220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~-a~p~~ 273 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA-IDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-CCGGG
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc-CCCCC
Confidence 999999999999999975 9999999999988 4999999999999999 87773
No 324
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=98.56 E-value=2.5e-07 Score=89.35 Aligned_cols=77 Identities=25% Similarity=0.204 Sum_probs=68.6
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhC-----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHH
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRF-----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCE 702 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~-----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~ 702 (713)
..++.|++ |++|+.+.|.+++++..+ +++.+..||++..+.++..++|.++||+++ +|+.+ +.|. +.+
T Consensus 140 ~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~~--~~G~~~~~ 215 (243)
T 2hls_A 140 VHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYLV--FVGVPYEE 215 (243)
T ss_dssp EEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCCCHH
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEEE--EeCCCCHH
Confidence 44666888 999999999999999887 789999999999999999999999999887 88865 7788 899
Q ss_pred HHHHHHHhh
Q 005125 703 LLEKSVKLY 711 (713)
Q Consensus 703 ~~~~~~~~~ 711 (713)
.|.++|++.
T Consensus 216 ~l~~~l~~~ 224 (243)
T 2hls_A 216 DFLDYVKSA 224 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 325
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=98.56 E-value=2.8e-07 Score=71.17 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=58.5
Q ss_pred EEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC--CHHHHHHHH
Q 005125 634 VLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH--QCELLEKSV 708 (713)
Q Consensus 634 v~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~ 708 (713)
+.|++ |++|+.+.|.++++.+.++ ++.++.+| .+.++..++|.++||+++ +|+.+.. |. +.++|.++|
T Consensus 4 v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~~l 76 (77)
T 1ilo_A 4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKKIL 76 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHHHC
T ss_pred EEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHHHh
Confidence 45566 9999999999999998885 68888888 788999999999999988 9998877 66 688888875
No 326
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.54 E-value=1.4e-07 Score=108.45 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=80.0
Q ss_pred ecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 616 VSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 616 ~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
..+..+|...+.....+++.|++ |++|+.+.|.++++++.+. .+.|+.||+++.+.++..++|.++||+++|++|+.
T Consensus 120 ~l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~ 199 (780)
T 3apo_A 120 TLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMA 199 (780)
T ss_dssp ECCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEEECTTSC
T ss_pred eechHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEEEeCCcE
Confidence 34567899988788889999999 9999999999999999884 59999999999999999999999999999999999
Q ss_pred eeeecCC-CHHHHHHHHHhh
Q 005125 693 VKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~~~~ 711 (713)
+.++.|. +.+.|.+||.+.
T Consensus 200 ~~~~~G~~~~~~l~~~l~~~ 219 (780)
T 3apo_A 200 AVKYNGDRSKESLVAFAMQH 219 (780)
T ss_dssp CEECCSCSCHHHHHHHHHTT
T ss_pred eeEecCCCCHHHHHHHHHHh
Confidence 9999999 999999999875
No 327
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=98.53 E-value=1.2e-07 Score=78.22 Aligned_cols=71 Identities=15% Similarity=0.306 Sum_probs=58.4
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC----CcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHH
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE----DHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCEL 703 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d----~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 703 (713)
..++.|++ |++|+.+.|.|+++++.++ ++.|+.+ +.+.++..++|.++||+++ +|+. +.|. +.+.
T Consensus 14 ~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---~~G~~~~~~ 85 (106)
T 3kp8_A 14 IGGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVRSLEA 85 (106)
T ss_dssp HTCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---EESCCCHHH
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHhCC---EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---ecCCCCHHH
Confidence 35777888 9999999999999998775 4444443 6789999999999999776 8874 7788 9999
Q ss_pred HHHHHH
Q 005125 704 LEKSVK 709 (713)
Q Consensus 704 ~~~~~~ 709 (713)
|.+++.
T Consensus 86 l~~~~~ 91 (106)
T 3kp8_A 86 LAVASG 91 (106)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999874
No 328
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=98.51 E-value=2.3e-07 Score=84.68 Aligned_cols=85 Identities=7% Similarity=0.087 Sum_probs=68.2
Q ss_pred hcCCceEEEeec--CchhHHHHHHH---HHHHHhCC-CcEEEEEeCCCcHhh--------------------------HH
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQLM---EQVCKRFP-SVNFLKVEVEDHPYI--------------------------AK 674 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~p-~~~~~~v~~d~~~~~--------------------------~~ 674 (713)
.....+++.|++ |++|+.+.+.+ +.+.+.+. ++.++.||+++.+.+ +.
T Consensus 45 ~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (172)
T 3f9u_A 45 QHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRV 124 (172)
T ss_dssp HTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHHHH
T ss_pred HcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHHHH
Confidence 445677788999 99999974433 44444332 589999999987755 78
Q ss_pred HcCCCcccEEEEE-ECCeEeeeecCC-C-HHHHHHHHHhh
Q 005125 675 SEGVSSIPAFKIY-KNGSRVKEIPGH-Q-CELLEKSVKLY 711 (713)
Q Consensus 675 ~~~v~~~Pt~~~~-~~g~~~~~~~g~-~-~~~~~~~~~~~ 711 (713)
.++|.++||+++| ++|+.+.++.|. + .+.+.++|++.
T Consensus 125 ~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~ 164 (172)
T 3f9u_A 125 KFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTG 164 (172)
T ss_dssp HHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHH
T ss_pred HcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHH
Confidence 8999999999999 789999999999 6 99998888764
No 329
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=98.50 E-value=2e-07 Score=75.96 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=64.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC--CcHhhHHHcCCCcccEEEEEECCeEeeeecCCCHHHH
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE--DHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELL 704 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d--~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 704 (713)
....+++|++ |++|+.+.++|+++.. ++.|..+|++ +.++++..+| .++|++ |.+|+.+ .+.|.++++|
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~---~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~-~~~g~~~~~l 87 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD---RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL-MMHRVNTSKL 87 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS---SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE-EESSCCHHHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh---CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE-EecCCCHHHH
Confidence 3456777887 9999999999987653 3899999998 7899999999 999975 5788876 5677799999
Q ss_pred HHHHHhhh
Q 005125 705 EKSVKLYS 712 (713)
Q Consensus 705 ~~~~~~~~ 712 (713)
+++|+++.
T Consensus 88 ~~~l~~~~ 95 (100)
T 1wjk_A 88 EKQLRKLS 95 (100)
T ss_dssp HHHHHSSS
T ss_pred HHHHHHHH
Confidence 99998763
No 330
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.49 E-value=7.8e-07 Score=77.00 Aligned_cols=92 Identities=16% Similarity=0.087 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHhccC-C-CCHHHHHHHHHH
Q 005125 462 RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKAS---KYKEACYAYSEGLEHE-A-YNSVLLCNRAAC 536 (713)
Q Consensus 462 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~ 536 (713)
....+.+.|.+.+..++.+.++.+ ++|+++.+.+ ++++++..++..++.+ | ++.+++++||..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F------------~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQF------------EYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHH------------HHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHH------------HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHH
Confidence 356777888888888888888887 7999999988 7889999999999998 7 568999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 537 RSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 537 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+.++|+|++|..+++++++++|++..+..
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999999888765543
No 331
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=98.47 E-value=7.5e-07 Score=77.43 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=72.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-----------------------cHhhHHHcCCCcccE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-----------------------HPYIAKSEGVSSIPA 683 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-----------------------~~~~~~~~~v~~~Pt 683 (713)
....++.|++ |++|+...+.+.++.+.++++.++.|+.+. ...++..++|.++|+
T Consensus 25 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 104 (136)
T 1zzo_A 25 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPA 104 (136)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSE
T ss_pred CCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCce
Confidence 3567777888 999999999999999999889999999854 467888999999999
Q ss_pred EEEE-ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 684 FKIY-KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 684 ~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
++++ .+|+.+ .+.|. +.+.|.++|++..
T Consensus 105 ~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 105 YAFVDPHGNVD-VVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp EEEECTTCCEE-EEESCCCHHHHHHHHHHHC
T ss_pred EEEECCCCCEE-EEecCCCHHHHHHHHHHHh
Confidence 9999 489888 89998 9999999998763
No 332
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.47 E-value=1.4e-06 Score=71.77 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 005125 496 ARLRGNLLFKASKYKEACYAYSEGLEHE-------AYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAA 568 (713)
Q Consensus 496 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A 568 (713)
++.+|..++..|+|..|+.+|++|++.. +..+.++.++|.++.++|++++|+.+++++++++|++..+....+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3479999999999999999999999863 345789999999999999999999999999999999988755433
Q ss_pred HHHHHHHHH
Q 005125 569 IQDYEMLIR 577 (713)
Q Consensus 569 ~~~~~~al~ 577 (713)
.|++.+.
T Consensus 88 --~~~~~~~ 94 (104)
T 2v5f_A 88 --YFEYIMA 94 (104)
T ss_dssp --HHHHHHH
T ss_pred --HHHHHHH
Confidence 5665544
No 333
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=98.47 E-value=4.3e-07 Score=97.36 Aligned_cols=99 Identities=10% Similarity=0.166 Sum_probs=79.3
Q ss_pred cceeecchhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCC--CcHhhHHHcCCCccc
Q 005125 612 NLVFVSSNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVE--DHPYIAKSEGVSSIP 682 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d--~~~~~~~~~~v~~~P 682 (713)
.+..+ +.+.|...+.. ...+++.|++ |++|+.+.|.++++++.++ .+.|+.||++ +.+.++..++|.++|
T Consensus 13 ~V~~L-t~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~P 91 (519)
T 3t58_A 13 PLTLL-DADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFP 91 (519)
T ss_dssp SSEEE-CTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBS
T ss_pred CcEEC-ChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccC
Confidence 34444 34577776644 4667778999 9999999999999998874 4999999995 489999999999999
Q ss_pred EEEEEEC----CeEeeeecCC-CHHHHHHHHHhh
Q 005125 683 AFKIYKN----GSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 683 t~~~~~~----g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|+++|.. |+.+....|. +.+.|.++|.++
T Consensus 92 Tl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~ 125 (519)
T 3t58_A 92 TVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDA 125 (519)
T ss_dssp EEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHH
T ss_pred EEEEEcCcccCCCceeEecCCCCHHHHHHHHHHH
Confidence 9999995 4444555555 999999999875
No 334
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=98.47 E-value=4.2e-07 Score=87.31 Aligned_cols=92 Identities=9% Similarity=0.015 Sum_probs=73.6
Q ss_pred hHHHHHh--hcCCceEEEee-----c--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 620 ERFRHFV--TSPGMAVVLFC-----S--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 620 ~~~~~~l--~~~~~~vv~f~-----~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+.+...+ ....++++.|+ + |++|+.+.|.++++++.+ +.+.++.||+++.+.++..++|.++||+.+|
T Consensus 9 ~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~ 88 (229)
T 2ywm_A 9 MQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIE 88 (229)
T ss_dssp HHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEE
T ss_pred HHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEE
Confidence 4455555 23344444433 4 999999999999986553 5699999999999999999999999999999
Q ss_pred ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 688 KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++|..+.++.|. +.+.+..++...
T Consensus 89 ~~~~~~~~~~G~~~~~~l~~~~~~~ 113 (229)
T 2ywm_A 89 GDKDYGIRYIGLPAGLEFTTLINGI 113 (229)
T ss_dssp SSSCCCEEEESCCCTTHHHHHHHHH
T ss_pred CCCcccceecCCccHHHHHHHHHHH
Confidence 988888889998 888888888654
No 335
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.46 E-value=6.5e-07 Score=94.19 Aligned_cols=94 Identities=17% Similarity=0.102 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAI-----NSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRI--------DPC 325 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~ 325 (713)
.......+..+|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ +|+
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 344455667889999999999999975 3444 567899999999999999999999999976 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
-...+++||.+|..+|++++|+.+|++|++
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 466789999999999999999999999988
No 336
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.46 E-value=4.5e-07 Score=95.15 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=77.3
Q ss_pred HHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Q 005125 267 NEAYNKARFEDALALYDRAIAI-----NSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRI--------DPCYHRAH 330 (713)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~ 330 (713)
......|+|++|+.+|++++++ .|++ +..+.++|.+|..+|+|++|+.++++++++ +|+-+..+
T Consensus 306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3334568999999999999986 4444 567899999999999999999999999986 44456789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
.+||.+|..+|++++|+.+|++|++
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999999998
No 337
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=98.45 E-value=5.4e-07 Score=79.71 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=72.4
Q ss_pred cCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCC---------------------------CcHhhHHHcC
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVE---------------------------DHPYIAKSEG 677 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d---------------------------~~~~~~~~~~ 677 (713)
....+++.|++ |++|+...|.+.++.+.+++ +.++.|+++ ....++..++
T Consensus 28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 107 (148)
T 2b5x_A 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE 107 (148)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhC
Confidence 34567777888 99999999999999988865 899999854 4567899999
Q ss_pred CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|.++|+++++ ++|+.+....|. +.+.|.++|++.
T Consensus 108 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 143 (148)
T 2b5x_A 108 NEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143 (148)
T ss_dssp CCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 9999999999 789999999998 889999999876
No 338
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=98.45 E-value=5.3e-07 Score=79.48 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=70.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-------------------------cHhhHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-------------------------HPYIAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-------------------------~~~~~~~~~v~ 679 (713)
...+++.|++ |++|+.+.|.+.++.++++ ++.++.|+++. ...++..++|.
T Consensus 34 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 113 (145)
T 3erw_A 34 GQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHII 113 (145)
T ss_dssp TSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCcC
Confidence 3456777888 9999999999999999996 68999998854 56889999999
Q ss_pred cccEEEEE-ECCeEeeeecCC-CHHHHHHHHH
Q 005125 680 SIPAFKIY-KNGSRVKEIPGH-QCELLEKSVK 709 (713)
Q Consensus 680 ~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~ 709 (713)
++|+++++ ++|+.+..+.|. +.+.|.++|+
T Consensus 114 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 145 (145)
T 3erw_A 114 TIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE 145 (145)
T ss_dssp EESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred ccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence 99999999 789999999999 9999998874
No 339
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=1.9e-06 Score=74.64 Aligned_cols=88 Identities=15% Similarity=0.047 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLG---RQIEALVECKEAIRID-P-CYHRAHHRLAMLYFRLGEAEKAVS 348 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 348 (713)
....+.+.|.+.+..++.+.++.+++|.++.+.+ +.++++..++.+++.+ | +..++++.||..|+++|+|++|+.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4566777788888888888889999999998888 6668999999998888 6 568888999999999999999999
Q ss_pred HHHHHhhhhccccH
Q 005125 349 HYKKSSSLANQKDI 362 (713)
Q Consensus 349 ~~~~al~~~~p~~~ 362 (713)
+++++++ ++|++.
T Consensus 93 y~~~lL~-ieP~n~ 105 (152)
T 1pc2_A 93 YVRGLLQ-TEPQNN 105 (152)
T ss_dssp HHHHHHH-HCTTCH
T ss_pred HHHHHHh-cCCCCH
Confidence 9999999 888875
No 340
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.43 E-value=1.1e-06 Score=92.24 Aligned_cols=89 Identities=4% Similarity=-0.052 Sum_probs=77.0
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--------CCC
Q 005125 459 AAGRFEDAVKTAQDAAQI-----DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH--------EAY 525 (713)
Q Consensus 459 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~ 525 (713)
..|+|++|+..|++++++ .|+++.... ++.++|.+|..+|+|++|+.+|++++++ +|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~---------~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLH---------MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHH---------HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 468999999999999984 677876554 3458999999999999999999999975 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
.+..+.+||.+|..+|++++|+.+|++|+++
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 4667999999999999999999999999876
No 341
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=98.41 E-value=3.3e-07 Score=82.39 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=62.8
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHH-HH--HHHHHhC-CCcEEEEEeCCCcHhhHHHc--------CCCcccEE
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQ-LM--EQVCKRF-PSVNFLKVEVEDHPYIAKSE--------GVSSIPAF 684 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~-~~--~~l~~~~-p~~~~~~v~~d~~~~~~~~~--------~v~~~Pt~ 684 (713)
.+.|........++++.|++ |++|+.+.+ .| +++++.+ .++++++||.++.++++..+ ||.++||+
T Consensus 29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~ 108 (173)
T 3ira_A 29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLN 108 (173)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEE
T ss_pred HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcce
Confidence 45666666778888999999 999999998 33 3455443 35899999999999999888 99999999
Q ss_pred EEEE-CCeEeee
Q 005125 685 KIYK-NGSRVKE 695 (713)
Q Consensus 685 ~~~~-~g~~~~~ 695 (713)
+||. +|+.+..
T Consensus 109 v~l~~dG~~v~~ 120 (173)
T 3ira_A 109 IIMTPGKKPFFA 120 (173)
T ss_dssp EEECTTSCEEEE
T ss_pred eeECCCCCceee
Confidence 9997 8988765
No 342
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=98.41 E-value=7.6e-07 Score=79.48 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=73.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC---------------------------CCcHhhHHHcCCCc
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV---------------------------EDHPYIAKSEGVSS 680 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~---------------------------d~~~~~~~~~~v~~ 680 (713)
+.+++.|++ |++|+...|.+.++.+++ ++.++.|++ +....++..++|.+
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 109 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG 109 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCS
T ss_pred CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCc
Confidence 567777888 999999999999999998 899999998 46678889999999
Q ss_pred ccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 681 IPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 681 ~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+|+++++ ++|+.+..+.|. +.++|.++|+++.
T Consensus 110 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~ 143 (154)
T 3ia1_A 110 QPWTFVVDREGKVVALFAGRAGREALLDALLLAG 143 (154)
T ss_dssp SCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTT
T ss_pred ccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhcc
Confidence 9997777 789999999999 9999999999874
No 343
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=98.40 E-value=5.1e-07 Score=93.99 Aligned_cols=82 Identities=12% Similarity=0.165 Sum_probs=67.3
Q ss_pred chhHHHHHhhcC--CceEEEeec--CchhHHHHHHHHHHHHhCC---------CcEEEEEeCCCcHhhHHHcCCCcccEE
Q 005125 618 SNERFRHFVTSP--GMAVVLFCS--KAEHKQVLQLMEQVCKRFP---------SVNFLKVEVEDHPYIAKSEGVSSIPAF 684 (713)
Q Consensus 618 ~~~~~~~~l~~~--~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---------~~~~~~v~~d~~~~~~~~~~v~~~Pt~ 684 (713)
+...|...+... ..+++.|++ |++|+.+.|.++++++.++ .+.|+.||++..+.++..++|.++||+
T Consensus 29 t~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V~~~PTl 108 (470)
T 3qcp_A 29 SGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRL 108 (470)
T ss_dssp SCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTCCSSCEE
T ss_pred CHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCCCccCeE
Confidence 345777766543 568888999 9999999999999999885 399999999999999999999999999
Q ss_pred EEEECCe--EeeeecCC
Q 005125 685 KIYKNGS--RVKEIPGH 699 (713)
Q Consensus 685 ~~~~~g~--~~~~~~g~ 699 (713)
++|..|. .+.++.|.
T Consensus 109 ilf~~gg~~~~~~y~G~ 125 (470)
T 3qcp_A 109 FFFYPRDSCRSNEECGT 125 (470)
T ss_dssp EEEEESSCCCTTSCCCC
T ss_pred EEEECCCceEEEEeeCC
Confidence 9997543 34455553
No 344
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.40 E-value=5.6e-07 Score=97.08 Aligned_cols=94 Identities=11% Similarity=0.169 Sum_probs=81.1
Q ss_pred chhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
....|...+.. ...+++.|++ |++|+.+.|.++++++.++ ++.++.+|.+.. +++..++|.++||+++|..|.
T Consensus 358 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~~~~~ 436 (481)
T 3f8u_A 358 VAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANK 436 (481)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEECTTC
T ss_pred cccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEEeCCC
Confidence 44577777765 5667778999 9999999999999999884 599999999988 788899999999999999887
Q ss_pred E--eeeecCC-CHHHHHHHHHhhh
Q 005125 692 R--VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~--~~~~~g~-~~~~~~~~~~~~~ 712 (713)
. +.++.|. +.+.|.++|++..
T Consensus 437 ~~~~~~~~G~~~~~~l~~~l~~~~ 460 (481)
T 3f8u_A 437 KLNPKKYEGGRELSDFISYLQREA 460 (481)
T ss_dssp TTSCEECCSCCSHHHHHHHHHHHC
T ss_pred eEeeeEeCCCCCHHHHHHHHHHhc
Confidence 6 6788888 9999999998764
No 345
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=98.37 E-value=1.4e-06 Score=77.44 Aligned_cols=83 Identities=7% Similarity=0.157 Sum_probs=72.2
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcH-----------------------hhHHHcCCCccc
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHP-----------------------YIAKSEGVSSIP 682 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~-----------------------~~~~~~~v~~~P 682 (713)
...++.|++ |++|+...+.+.++.+.++ ++.++.|+.+..+ .++..++|.++|
T Consensus 31 k~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 110 (152)
T 2lja_A 31 KYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIP 110 (152)
T ss_dssp SEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSC
T ss_pred CEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCC
Confidence 456667888 9999999999999999885 4899999988765 688899999999
Q ss_pred EEEEEE-CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 683 AFKIYK-NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+++++. +|+.+....|. +.++|.++|++..
T Consensus 111 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~ 142 (152)
T 2lja_A 111 RFILLDRDGKIISANMTRPSDPKTAEKFNELL 142 (152)
T ss_dssp CEEEECTTSCEEESSCCCTTCHHHHHHHHHHH
T ss_pred EEEEECCCCeEEEccCCCCCHHHHHHHHHHHh
Confidence 999997 89999999998 8899999998763
No 346
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=98.36 E-value=1.9e-06 Score=76.60 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=70.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC------------------------cHhhHHHcC--C
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED------------------------HPYIAKSEG--V 678 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~------------------------~~~~~~~~~--v 678 (713)
...+++.|++ |++|+...|.+.++.+++ .++.++.|++|. ...++..++ |
T Consensus 24 gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 103 (151)
T 3raz_A 24 APVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTV 103 (151)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCCS
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCcc
Confidence 3456667888 999999999999999887 468999999873 344667788 9
Q ss_pred CcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 679 SSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 679 ~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
..+|+++++ ++|+.+..+.|. +.++|.++|++..
T Consensus 104 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~ 139 (151)
T 3raz_A 104 GVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAH 139 (151)
T ss_dssp CCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 999988877 689999999999 9999999998763
No 347
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=98.36 E-value=1.4e-06 Score=77.49 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=71.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCc----------------------HhhHHHcCCCccc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDH----------------------PYIAKSEGVSSIP 682 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~----------------------~~~~~~~~v~~~P 682 (713)
...+++.|++ |++|+...|.+.++.+.++ ++.++.|+++.. ..++..++|.++|
T Consensus 26 gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 105 (151)
T 2f9s_A 26 GKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLP 105 (151)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCCC
Confidence 3456777888 9999999999999998874 489999988763 4788899999999
Q ss_pred EEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 683 AFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 683 t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+++++ ++|+.+..+.|. +.+.|.++|++.
T Consensus 106 ~~~lid~~G~i~~~~~G~~~~~~l~~~l~~l 136 (151)
T 2f9s_A 106 TTFLINPEGKVVKVVTGTMTESMIHDYMNLI 136 (151)
T ss_dssp EEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEeCCCCHHHHHHHHHHH
Confidence 98888 789999999999 999999999875
No 348
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=98.34 E-value=2.1e-06 Score=77.50 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=71.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCCcHhhHHHc---------------------------C
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVEDHPYIAKSE---------------------------G 677 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~~~~~~~~~---------------------------~ 677 (713)
...+++.|++ |++|....|.+.++.+.+++ +.++.|+++..+.....+ +
T Consensus 34 gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (165)
T 3or5_A 34 GKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGG 113 (165)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTTC
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhccC
Confidence 3566777888 99999999999999988854 899999999877666665 8
Q ss_pred CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|..+|+++++ ++|+.+..+.|. +.+.|.++|++.
T Consensus 114 i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 149 (165)
T 3or5_A 114 ITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMA 149 (165)
T ss_dssp SCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 9999998888 689999999998 899999999875
No 349
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=98.34 E-value=1.7e-06 Score=93.99 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=70.3
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHH
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLE 705 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 705 (713)
....+++|++ |++|+.+.|.+++++..+|.+.+..+|+++.++++..++|+++|++++ +|+.+.. |. +.++|.
T Consensus 117 ~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~~~--G~~~~~~l~ 192 (521)
T 1hyu_A 117 GDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFGQ--GRMTLTEIV 192 (521)
T ss_dssp SCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEEE--SCCCHHHHH
T ss_pred CCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEEec--CCCCHHHHH
Confidence 3446777888 999999999999999999999999999999999999999999999866 9998866 77 889999
Q ss_pred HHHHhh
Q 005125 706 KSVKLY 711 (713)
Q Consensus 706 ~~~~~~ 711 (713)
++|+..
T Consensus 193 ~~l~~~ 198 (521)
T 1hyu_A 193 AKVDTG 198 (521)
T ss_dssp HHHCCS
T ss_pred HHHhhc
Confidence 998653
No 350
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=98.34 E-value=9.4e-07 Score=91.40 Aligned_cols=93 Identities=14% Similarity=0.237 Sum_probs=77.8
Q ss_pred chhHHHHHhh-cCCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC-
Q 005125 618 SNERFRHFVT-SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG- 690 (713)
Q Consensus 618 ~~~~~~~~l~-~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g- 690 (713)
+...|...+. ....+++.|++ ||+|+.+.|.++++++.+. .+.++.+|.+..+ +..++|.++||+.+|..|
T Consensus 255 ~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~~~~~ 332 (361)
T 3uem_A 255 VGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASA 332 (361)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEECSSS
T ss_pred ecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEEECCC
Confidence 3456777663 56677888999 9999999999999999884 3899999998876 578999999999999655
Q ss_pred -eEeeeecCC-CHHHHHHHHHhhh
Q 005125 691 -SRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 691 -~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+.+.++.|. +.+.|.+||++.+
T Consensus 333 ~~~~~~~~G~~~~~~l~~~l~~~~ 356 (361)
T 3uem_A 333 DRTVIDYNGERTLDGFKKFLESGG 356 (361)
T ss_dssp SCCCEECCSCSSHHHHHHHHTTTS
T ss_pred CcceeEecCCCCHHHHHHHHHhcC
Confidence 567888898 9999999998764
No 351
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.30 E-value=7.6e-07 Score=96.60 Aligned_cols=93 Identities=13% Similarity=0.213 Sum_probs=78.4
Q ss_pred chhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 618 SNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 618 ~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
+...|...+.. ...+++.|++ ||+|+.+.|.++++++.++ .+.++.+|++..+.. . ++|.++||+++|.+|
T Consensus 364 ~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~~~~~~G 441 (504)
T 2b5e_A 364 VGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTIVLYPGG 441 (504)
T ss_dssp CTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEEEEECCT
T ss_pred ccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeEEEEeCC
Confidence 34567776644 5678888999 9999999999999998764 799999999887655 4 999999999999999
Q ss_pred eE--eeeecCC-CHHHHHHHHHhhh
Q 005125 691 SR--VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 691 ~~--~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+. +.++.|. +.+.|.++|++..
T Consensus 442 ~~~~~~~~~G~~~~~~l~~~i~~~~ 466 (504)
T 2b5e_A 442 KKSESVVYQGSRSLDSLFDFIKENG 466 (504)
T ss_dssp TSCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred ceecceEecCCCCHHHHHHHHHhcC
Confidence 76 7788898 9999999998763
No 352
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=98.28 E-value=3.1e-06 Score=75.22 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=70.6
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCCcH----------------------hhHHHcCCCccc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVEDHP----------------------YIAKSEGVSSIP 682 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~~~----------------------~~~~~~~v~~~P 682 (713)
...+++.|++ |+.|....+.+.++.+++++ +.++.|+++..+ .++..++|.++|
T Consensus 28 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 107 (152)
T 3gl3_A 28 GSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMP 107 (152)
T ss_dssp TSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSSS
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCCC
Confidence 3456666888 99999999999999988854 899999988665 677889999999
Q ss_pred EEEEE-ECCeEeeeecCC---CHHHHHHHHHhhh
Q 005125 683 AFKIY-KNGSRVKEIPGH---QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~ 712 (713)
+++++ ++|+.+....|. +.+.|.++|++..
T Consensus 108 ~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~ 141 (152)
T 3gl3_A 108 TSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL 141 (152)
T ss_dssp EEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred eEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHH
Confidence 98877 789999999996 5589999998763
No 353
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=98.28 E-value=1.7e-06 Score=68.25 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=59.2
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH----hhHHHcC--CCcccEEEEEECCeEeeeecCCCHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP----YIAKSEG--VSSIPAFKIYKNGSRVKEIPGHQCEL 703 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~ 703 (713)
.+++|+. |++|+.+.++|+++...++++.+..+|++..+ +++..++ +.++|++ |.+|+.+. |. +.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~~--~~ 74 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---GY--TD 74 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---SS--HH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---CH--HH
Confidence 4667776 99999999999999988778999999987654 7888898 9999997 56888765 33 67
Q ss_pred HHHHHHh
Q 005125 704 LEKSVKL 710 (713)
Q Consensus 704 ~~~~~~~ 710 (713)
|.+++++
T Consensus 75 l~~~~~~ 81 (85)
T 1ego_A 75 FAAWVKE 81 (85)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888765
No 354
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.27 E-value=4.6e-06 Score=87.66 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=79.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc------
Q 005125 454 AQVYIAAGRFEDAVKTAQDAAQI-----DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH------ 522 (713)
Q Consensus 454 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 522 (713)
..-+..+|++++|+..+++++++ .|+++.... .+.++|.+|..+|+|++|+.++++++++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~---------~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg 364 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLK---------VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP 364 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHH---------HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence 34456789999999999999975 567766543 4458999999999999999999999975
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 523 --EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 523 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+|+.+..+++||.+|..+|++++|+.+|++|+++
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3344667999999999999999999999999875
No 355
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=98.22 E-value=2e-06 Score=77.65 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=68.6
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC--CCcEEEEEeC----------------------------CCcHhhHHHc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF--PSVNFLKVEV----------------------------EDHPYIAKSE 676 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~----------------------------d~~~~~~~~~ 676 (713)
...+++.|++ |++|+...|.+.++.+++ .++.++.|.. |....++..+
T Consensus 38 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (164)
T 2h30_A 38 DKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNL 117 (164)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHHHc
Confidence 4567777888 999999999999999875 4566655543 3345788899
Q ss_pred CCCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 677 GVSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|.++|+++++ ++|+.+..+.|. +.+.|.++|++.
T Consensus 118 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~ 154 (164)
T 2h30_A 118 NISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNP 154 (164)
T ss_dssp TCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred CCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 99999999988 789999999998 999999999875
No 356
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.21 E-value=2.2e-06 Score=98.37 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=80.3
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
...|...+ .....+++.|++ |++|+.+.|.++++++.+ +.+.|+.||+++.+.++..++|.++||+++|++|+.+.
T Consensus 664 ~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 743 (780)
T 3apo_A 664 PQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKK 743 (780)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTTT
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEEEEEcCCCccc
Confidence 45665543 445667788988 999999999999999887 57999999999999999999999999999999998888
Q ss_pred eecC----C-CHHHHHHHHHhh
Q 005125 695 EIPG----H-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g----~-~~~~~~~~~~~~ 711 (713)
++.| . +.+.|.++|++.
T Consensus 744 ~~~G~~~g~~~~~~l~~~l~~~ 765 (780)
T 3apo_A 744 SIWEEQINSRDAKTIAALIYGK 765 (780)
T ss_dssp EEEEEEECCCCHHHHHHHHHHH
T ss_pred cccCcccCCcCHHHHHHHHHHH
Confidence 7777 3 899999999876
No 357
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=98.20 E-value=4.1e-06 Score=80.83 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=73.0
Q ss_pred cchhHHHHHhhcC-CceEEEeec----CchhHHHHHHHHHHHHhCCC------cEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 617 SSNERFRHFVTSP-GMAVVLFCS----KAEHKQVLQLMEQVCKRFPS------VNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 617 ~~~~~~~~~l~~~-~~~vv~f~~----cg~c~~~~~~~~~l~~~~p~------~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
....++...+... .++++.|+. |++|+.+.++++++++.++. +.|+.+|+++.+.++..|||+++|||.
T Consensus 12 ~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~ 91 (243)
T 2hls_A 12 DFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVA 91 (243)
T ss_dssp HHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEE
Confidence 3445666666543 344444442 99999999999999988766 999999999999999999999999999
Q ss_pred EEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 686 IYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 686 ~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+| +| ..++.|. +.+.+..++..+
T Consensus 92 i~-~g--~~~~~G~~~~~~l~~fv~~~ 115 (243)
T 2hls_A 92 FL-GG--EVRWTGIPAGEEIRALVEVI 115 (243)
T ss_dssp ET-TT--TEEEESCCCTTHHHHHHHHH
T ss_pred EE-CC--ceeEcCCCcHHHHHHHHHHH
Confidence 99 67 6778788 667787777653
No 358
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=98.20 E-value=5.9e-06 Score=73.43 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=65.7
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCC-------------------------cHhhHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVED-------------------------HPYIAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~-------------------------~~~~~~~~~v~ 679 (713)
...+++.|++ |++|+...|.+.++.+.+++ +.++.|++|. ...++..++|.
T Consensus 29 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 108 (152)
T 2lrn_A 29 GKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIV 108 (152)
T ss_dssp TSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCC
Confidence 3456777888 99999999999999988754 8999999987 56788899999
Q ss_pred cccEEEEE-ECCeEeeeecCCCHHHHHHHHHhh
Q 005125 680 SIPAFKIY-KNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 680 ~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
++|+++++ ++|+.+....+ .++|.++|++.
T Consensus 109 ~~P~~~lid~~G~i~~~~~~--~~~l~~~l~~l 139 (152)
T 2lrn_A 109 GFPHIILVDPEGKIVAKELR--GDDLYNTVEKF 139 (152)
T ss_dssp SSCEEEEECTTSEEEEECCC--TTHHHHHHHHH
T ss_pred cCCeEEEECCCCeEEEeeCC--HHHHHHHHHHH
Confidence 99999888 68999888643 35666666554
No 359
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=98.19 E-value=5.8e-06 Score=74.15 Aligned_cols=83 Identities=10% Similarity=0.016 Sum_probs=69.3
Q ss_pred CCceEEEeec--CchhHH-HHHHHHHHHHhCCC--cEEEEEeCC----------------------------CcHh----
Q 005125 629 PGMAVVLFCS--KAEHKQ-VLQLMEQVCKRFPS--VNFLKVEVE----------------------------DHPY---- 671 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~-~~~~~~~l~~~~p~--~~~~~v~~d----------------------------~~~~---- 671 (713)
...+++.|++ |++|+. +.|.+.++.+++++ +.++.|+++ ....
T Consensus 30 gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (160)
T 3lor_A 30 GKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRI 109 (160)
T ss_dssp TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCSS
T ss_pred CCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccchh
Confidence 3566777888 999999 69999999999853 889888862 2233
Q ss_pred --hHHHcCCCcccEEEEEE-CCeEeeeecCC-CHHHHHHHHHhh
Q 005125 672 --IAKSEGVSSIPAFKIYK-NGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 672 --~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++..++|.++|+++++. +|+.+..+.|. +.+.|.+.|++.
T Consensus 110 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 153 (160)
T 3lor_A 110 PSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSL 153 (160)
T ss_dssp CHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHH
T ss_pred hhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHH
Confidence 88999999999998884 89999999999 999999999875
No 360
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=98.19 E-value=5.8e-06 Score=71.78 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=69.8
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeC----------------------------CCcHhhHHHcC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEV----------------------------EDHPYIAKSEG 677 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~----------------------------d~~~~~~~~~~ 677 (713)
...+++.|++ |++|....+.+.++.+.++ ++.++.++. +....++..++
T Consensus 22 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (138)
T 4evm_A 22 GKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYG 101 (138)
T ss_dssp TSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHTT
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHcC
Confidence 3456667888 9999999999999998885 588888842 33456888999
Q ss_pred CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|.++|+++++ ++|+.+....|. +.++|.++|++.
T Consensus 102 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 102 VRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp CCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred cccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 9999999999 789999999998 999999999875
No 361
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=98.18 E-value=3.2e-06 Score=74.68 Aligned_cols=82 Identities=9% Similarity=0.087 Sum_probs=68.7
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCCcHh-------------------------hHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVEDHPY-------------------------IAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~~~~-------------------------~~~~~~v~ 679 (713)
...+++.|++ |++|....|.+.++.+.+++ +.++.|+++..+. ++..++|.
T Consensus 31 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~ 110 (148)
T 3hcz_A 31 AKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIY 110 (148)
T ss_dssp CSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCC
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCcC
Confidence 3456667888 99999999999999988853 8999999997776 89999999
Q ss_pred cccEEEEE-ECCeEeeeecCC-CHHHHHHHHHh
Q 005125 680 SIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 680 ~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~ 710 (713)
++|+++++ ++|+.+.+..|. +.+.+.+.|.+
T Consensus 111 ~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~ 143 (148)
T 3hcz_A 111 ATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEK 143 (148)
T ss_dssp SSCEEEEECTTCBEEEESCCGGGHHHHHHHHHH
T ss_pred CCCEEEEECCCCcEEEecCCHHHHHHHHHHHHH
Confidence 99999999 689999999988 66666666544
No 362
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=98.18 E-value=8.5e-06 Score=71.87 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=68.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC-CC--cEEEEEeCCCc-------------------------HhhHHHcCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PS--VNFLKVEVEDH-------------------------PYIAKSEGV 678 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~--~~~~~v~~d~~-------------------------~~~~~~~~v 678 (713)
...+++.|++ |++|+...|.+.++.+++ ++ +.++.|+++.. ..++..++|
T Consensus 33 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 112 (148)
T 3fkf_A 33 NRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAI 112 (148)
T ss_dssp TSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTC
T ss_pred CcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCC
Confidence 3566777888 999999999999999988 43 89999988873 478899999
Q ss_pred CcccEEEEE-ECCeEeeeecCCCHHHHHHHHHhh
Q 005125 679 SSIPAFKIY-KNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 679 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
.++|+++++ ++|+.+.... +.+.|.+.|++.
T Consensus 113 ~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~l 144 (148)
T 3fkf_A 113 LTLPTNILLSPTGKILARDI--QGEALTGKLKEL 144 (148)
T ss_dssp CSSSEEEEECTTSBEEEESC--CHHHHHHHHHHH
T ss_pred CCcCEEEEECCCCeEEEecC--CHHHHHHHHHHH
Confidence 999999998 6898888776 788888888765
No 363
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=98.15 E-value=7.8e-06 Score=73.12 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=68.8
Q ss_pred CCceEEEeec--CchhHHH-HHHHHHHHHhCC--CcEEEEEeCC----------------------------CcH-----
Q 005125 629 PGMAVVLFCS--KAEHKQV-LQLMEQVCKRFP--SVNFLKVEVE----------------------------DHP----- 670 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~-~~~~~~l~~~~p--~~~~~~v~~d----------------------------~~~----- 670 (713)
...+++.|++ |++|+.. .|.+.++.++++ ++.++.|+.+ ...
T Consensus 28 gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 107 (158)
T 3eyt_A 28 GKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMP 107 (158)
T ss_dssp TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSC
T ss_pred CCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhH
Confidence 3456677888 9999995 999999999985 5888888863 111
Q ss_pred hhHHHcCCCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 671 YIAKSEGVSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 671 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.++..++|..+|+++++ ++|+.+..+.|. +.+.|.+.|++.
T Consensus 108 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 150 (158)
T 3eyt_A 108 RTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATL 150 (158)
T ss_dssp HHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 48889999999988888 689999999999 999999998875
No 364
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=98.15 E-value=8.5e-06 Score=72.93 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=68.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-------------------cHhhHHHcCCCcccEEE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-------------------HPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-------------------~~~~~~~~~v~~~Pt~~ 685 (713)
...+++.|++ |+.|+...|.+.++.++++ ++.++.|+.+. ...+...++|.++|+++
T Consensus 41 gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~ 120 (158)
T 3hdc_A 41 GKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTF 120 (158)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEEE
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceEE
Confidence 3456777888 9999999999999999986 69999999987 67899999999999966
Q ss_pred EE-ECCeEeeeecCC---CHHHHHHHHHh
Q 005125 686 IY-KNGSRVKEIPGH---QCELLEKSVKL 710 (713)
Q Consensus 686 ~~-~~g~~~~~~~g~---~~~~~~~~~~~ 710 (713)
++ ++|+.+..+.|. +.+++.+.+++
T Consensus 121 lid~~G~i~~~~~G~~~~~~~~~~~~~~~ 149 (158)
T 3hdc_A 121 IVDRKGIIRQRVTGGIEWDAPKVVSYLKS 149 (158)
T ss_dssp EECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred EEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence 66 689999999998 55666666554
No 365
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=98.15 E-value=2e-06 Score=72.47 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=59.3
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-----HhhHHHcCCCcccEEEEEECCeEeeeecCC----C
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-----PYIAKSEGVSSIPAFKIYKNGSRVKEIPGH----Q 700 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~----~ 700 (713)
.+++|++ |++|+.+.|.|+++... ..++.|+.+.. +.++..++|.++|++ |.+|+.+..+.|. +
T Consensus 21 ~vv~f~a~~C~~C~~~~~~l~~~~~~---~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~~~~~~~~~~~ 95 (116)
T 2e7p_A 21 PVVVFSKTYCGYCNRVKQLLTQVGAS---YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIGGCDTVVEKHQ 95 (116)
T ss_dssp SEEEEECTTCHHHHHHHHHHHHHTCC---CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEECHHHHHHHHH
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCC---eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEECChHHHHHHHh
Confidence 4555888 99999999999988654 46677776655 568899999999998 6799998877665 5
Q ss_pred HHHHHHHHHhh
Q 005125 701 CELLEKSVKLY 711 (713)
Q Consensus 701 ~~~~~~~~~~~ 711 (713)
.+.|.++|++.
T Consensus 96 ~~~l~~~l~~~ 106 (116)
T 2e7p_A 96 RNELLPLLQDA 106 (116)
T ss_dssp TTCHHHHHHHT
T ss_pred CChHHHHHHHc
Confidence 67888888765
No 366
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=98.15 E-value=3.6e-06 Score=76.29 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=66.2
Q ss_pred cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC-----------------------CCcHhhHHHcCCCccc
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV-----------------------EDHPYIAKSEGVSSIP 682 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~-----------------------d~~~~~~~~~~v~~~P 682 (713)
....+++.|++ |++|+...|.+.++.++ ++.++.|+. |....++..++|..+|
T Consensus 50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 127 (168)
T 2b1k_A 50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 127 (168)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccC
Confidence 44567777888 99999999999999886 577777773 4455788889999999
Q ss_pred -EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 683 -AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 683 -t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|++.++|+.+....|. +.+.+.++|++.
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 158 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL 158 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 55666789999999998 888888877654
No 367
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.14 E-value=5.7e-06 Score=73.55 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=69.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeC-----------------------CCcHhhHHHcCCCcc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEV-----------------------EDHPYIAKSEGVSSI 681 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~-----------------------d~~~~~~~~~~v~~~ 681 (713)
...+++.|++ |++|+...+.+.++.+.++ ++.++.|+. +....++..++|..+
T Consensus 28 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 107 (153)
T 2l5o_A 28 GKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVY 107 (153)
T ss_dssp TCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCSS
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCcc
Confidence 4566777887 9999999999999998885 377776653 345678899999999
Q ss_pred cEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 682 PAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|+++++ .+|+.+..+.|. +.+.|.++|++.
T Consensus 108 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 139 (153)
T 2l5o_A 108 PTSVLIGKKGEILKTYVGEPDFGKLYQEIDTA 139 (153)
T ss_dssp SEEEEECSSSCCCEEEESSCCHHHHHHHHHHH
T ss_pred CeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 999988 689999999998 999999999875
No 368
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.12 E-value=4.8e-06 Score=74.32 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=67.3
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-----------------------cHhhHHHcCCCcccE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-----------------------HPYIAKSEGVSSIPA 683 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-----------------------~~~~~~~~~v~~~Pt 683 (713)
....++.|++ |++|+.+.|.+.++.+. +++.++.|+.++ ...++..++|.++|+
T Consensus 42 gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 120 (156)
T 1kng_A 42 GKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE 120 (156)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred CCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccCe
Confidence 4567777888 99999999999999877 668888888643 346788899999996
Q ss_pred EEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 684 FKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 684 ~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++++ .+|+.+..+.|. +.+.|.++|++.
T Consensus 121 ~~~id~~G~i~~~~~g~~~~~~l~~~l~~~ 150 (156)
T 1kng_A 121 TFVVGREGTIVYKLVGPITPDNLRSVLLPQ 150 (156)
T ss_dssp EEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred EEEEcCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 5545 789999999998 889888888765
No 369
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=98.10 E-value=1.4e-05 Score=72.07 Aligned_cols=82 Identities=16% Similarity=0.285 Sum_probs=68.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC------------------CcH------------------
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE------------------DHP------------------ 670 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d------------------~~~------------------ 670 (713)
...+++.|++ |++|+...|.+.++.++++++.|+.|+++ +.+
T Consensus 37 gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (165)
T 3ha9_A 37 GDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMV 116 (165)
T ss_dssp SSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEE
T ss_pred CCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeEE
Confidence 3456677888 99999999999999999989999999988 343
Q ss_pred ----hhHHHcCCCcccEEEEE-ECCeEeeeecCC--CHHHHHHHHHhhh
Q 005125 671 ----YIAKSEGVSSIPAFKIY-KNGSRVKEIPGH--QCELLEKSVKLYS 712 (713)
Q Consensus 671 ----~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~--~~~~~~~~~~~~~ 712 (713)
.+...++|.++|+++++ ++|+.+. .|. +.+.|.+.|++..
T Consensus 117 ~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 117 MDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp ECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred eChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHh
Confidence 78888999999999998 5788877 454 6899999998753
No 370
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=98.09 E-value=2.8e-06 Score=65.96 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=51.6
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCC-CcHhhHHHcCCCcccEEEEEECCeEeeeecCC--CHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVE-DHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH--QCELL 704 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~ 704 (713)
.+++|++ |++|+.+.+.++++.+.++ .+.++.+|.+ +.+.++..+|+.++|++++ +|+.+. .|. +.++|
T Consensus 3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~~--~G~~~~~~~l 77 (80)
T 2k8s_A 3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAFH--INFGAGIDDL 77 (80)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEEE--EEEEEEHHHH
T ss_pred ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEEE--eccCcCHHHh
Confidence 4666777 9999999999999887763 3555666654 5788889999999999876 888653 333 55555
No 371
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=98.07 E-value=1.1e-05 Score=71.66 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=68.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCCc-----------------------HhhHHHcCCCcc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVEDH-----------------------PYIAKSEGVSSI 681 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~~-----------------------~~~~~~~~v~~~ 681 (713)
...+++.|++ |+.|....+.+.++.+.+++ +.++.|+++.. ..++..++|..+
T Consensus 28 gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 107 (154)
T 3kcm_A 28 GQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGV 107 (154)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCSB
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCCC
Confidence 3566777888 99999999999999999854 88999998875 237888999999
Q ss_pred cEEEEE-ECCeEeeeecCC---CHHHHHHHHHhh
Q 005125 682 PAFKIY-KNGSRVKEIPGH---QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~ 711 (713)
|+++++ ++|+.+..+.|. +.+.|.++|++.
T Consensus 108 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 141 (154)
T 3kcm_A 108 PETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNE 141 (154)
T ss_dssp CEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC
T ss_pred CeEEEECCCCcEEEEEcCCCccccHHHHHHHHHH
Confidence 955555 789999999988 567999998865
No 372
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=98.02 E-value=2.2e-06 Score=83.60 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=56.4
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC----CCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV----EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLE 705 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~----d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 705 (713)
++.|++ ||+|+++.|.+++++++++ ++++|. ++.++++++++|+++||+.+ +|+. +.|. +.++|.
T Consensus 201 vV~F~A~WC~~Ck~l~p~le~lA~~l~---~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~~---~~G~~~~~~L~ 272 (291)
T 3kp9_A 201 GTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVRSLEALA 272 (291)
T ss_dssp CEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTEE---EESCCCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcC---EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCEE---ecCCCCHHHHH
Confidence 577888 9999999999999987764 455552 34789999999999999544 8874 8888 999999
Q ss_pred HHHH
Q 005125 706 KSVK 709 (713)
Q Consensus 706 ~~~~ 709 (713)
+++.
T Consensus 273 ~~l~ 276 (291)
T 3kp9_A 273 VASG 276 (291)
T ss_dssp HHTC
T ss_pred HHHC
Confidence 9875
No 373
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.00 E-value=0.00036 Score=74.98 Aligned_cols=162 Identities=11% Similarity=-0.044 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHh--CCCCHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINS-SKATYRSNKSAALIGLG---------RQIEALVECKEAIRI--DPCYHRA 329 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~--~p~~~~~ 329 (713)
+..+-..+.+.|++++|+.+|+++.+..- -+...|..+-.++...+ ..++|...|++.... .| +...
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~~t 107 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NEAT 107 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CHHH
Confidence 45556777899999999999999987532 24556666666665443 378899999988775 34 5778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh-hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKKSSSL-ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYAL 408 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 408 (713)
|..+...|.+.|++++|++.|+++... +.|+. ..+..+...+...|++++|...++.....+-......|..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-------~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~ 180 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-------RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA 180 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-------ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999999999999999988762 34553 4566667778889999999999999988765544588999
Q ss_pred HHHHHHHccCHHHHHHHhhcccc
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPK 431 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~ 431 (713)
+-.+|.+.|+.++|.++|++.-.
T Consensus 181 Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHH
Confidence 99999999999999999998743
No 374
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.00 E-value=0.00026 Score=76.10 Aligned_cols=162 Identities=8% Similarity=-0.064 Sum_probs=127.1
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcc---------CHHHHHHHhhccccCChhhHHhhhccc
Q 005125 374 KCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQ---------RHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 374 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
....+.+.|++++|+..|++....+-......|..+-.++...+ ..++|.+.|++..... ..
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G---------~~ 102 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK---------VV 102 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT---------CC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC---------CC
Confidence 34556678999999999999988754433467777666665443 4788999998875432 11
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP-NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH- 522 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 522 (713)
.+...|..+-..|.+.|++++|..+|++..+..- -+...+. .+-..|.+.|++++|.+.|++..+.
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn------------~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG------------PALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh------------HHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3566888999999999999999999999887532 2344454 5778889999999999999998865
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 523 -EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 523 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
.| +...|..+-.+|.+.|+.++|.+.+++..+..
T Consensus 171 ~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 171 VVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 34 67889999999999999999999999987753
No 375
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=3.1e-05 Score=68.48 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=67.0
Q ss_pred CceEEEeec--Cch--hHHHHHHHHHHHHhC---CCcEEEEEeCCCcH-------------------------hhHHHcC
Q 005125 630 GMAVVLFCS--KAE--HKQVLQLMEQVCKRF---PSVNFLKVEVEDHP-------------------------YIAKSEG 677 (713)
Q Consensus 630 ~~~vv~f~~--cg~--c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~-------------------------~~~~~~~ 677 (713)
..+++.|++ |++ |....|.+.++.+++ .++.++.|++|..+ .++..++
T Consensus 34 k~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 113 (150)
T 3fw2_A 34 KSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYS 113 (150)
T ss_dssp SEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred CEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHcC
Confidence 456777888 999 999999999999887 45899999998765 6888999
Q ss_pred CCcccEEEEE-ECCeEeeeecCCCHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
|..+|+++++ ++|+.+.... +.+.|.+.|++.
T Consensus 114 v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~l 146 (150)
T 3fw2_A 114 IYKIPANILLSSDGKILAKNL--RGEELKKKIENI 146 (150)
T ss_dssp CCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHH
T ss_pred CCccCeEEEECCCCEEEEccC--CHHHHHHHHHHH
Confidence 9999999999 6899888775 677787777654
No 376
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=97.96 E-value=1.7e-05 Score=73.00 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=66.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--Cc------EEEEEeCCC-cHhhHHHc----------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SV------NFLKVEVED-HPYIAKSE---------------------- 676 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~------~~~~v~~d~-~~~~~~~~---------------------- 676 (713)
..+++.|++ |++|....|.|.++.++++ ++ .|+.|+++. .+.....+
T Consensus 60 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 139 (183)
T 3lwa_A 60 QVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASL 139 (183)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGGGT
T ss_pred CEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHHHh
Confidence 456677888 9999999999999998873 26 999999998 56555554
Q ss_pred ---CCCcccEE-EEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 677 ---GVSSIPAF-KIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 677 ---~v~~~Pt~-~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|..+|++ ++.++|+.+..+.|. +.+.|.++|++.
T Consensus 140 ~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 179 (183)
T 3lwa_A 140 GGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPL 179 (183)
T ss_dssp TTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHH
T ss_pred ccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 68899954 445789999999998 999999999875
No 377
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=97.93 E-value=3.5e-05 Score=68.32 Aligned_cols=79 Identities=8% Similarity=0.136 Sum_probs=65.3
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHh-----------------------hHHHcCCCccc
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPY-----------------------IAKSEGVSSIP 682 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~-----------------------~~~~~~v~~~P 682 (713)
..+++.|++ |++|....|.+.++.++++ ++.++.|++|..+. ++..++|..+|
T Consensus 36 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P 115 (152)
T 2lrt_A 36 KVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLP 115 (152)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSCS
T ss_pred CEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccCc
Confidence 456777888 9999999999999998874 48999999987664 78889999999
Q ss_pred EEEEE-ECCeEeeeecCC-CHHHHHHHH
Q 005125 683 AFKIY-KNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 683 t~~~~-~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
+++++ ++|+.+....|. +.+.....+
T Consensus 116 ~~~lid~~G~i~~~~~g~~~~e~~~~~~ 143 (152)
T 2lrt_A 116 SVFLVNRNNELSARGENIKDLDEAIKKL 143 (152)
T ss_dssp EEEEEETTTEEEEETTTCSCHHHHHHHH
T ss_pred eEEEECCCCeEEEecCCHHHHHHHHHHH
Confidence 99988 589999999998 665554433
No 378
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=97.92 E-value=3.1e-05 Score=67.77 Aligned_cols=79 Identities=8% Similarity=0.093 Sum_probs=64.0
Q ss_pred CceEEEeec--CchhHHHHHHHHH---HHHhC--CCcEEEEEeCCCcHh------------------------hHHHcCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQ---VCKRF--PSVNFLKVEVEDHPY------------------------IAKSEGV 678 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~---l~~~~--p~~~~~~v~~d~~~~------------------------~~~~~~v 678 (713)
..+++.||+ |++|+...|.+.+ +.+.+ .++.++.|+.|..+. ++..++|
T Consensus 32 k~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v 111 (142)
T 3eur_A 32 EYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDL 111 (142)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSCC
T ss_pred CEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcCC
Confidence 556777888 9999999999999 88776 569999999987643 3677899
Q ss_pred CcccEEEEE-ECCeEeeeecCCCHHHHHHHHHh
Q 005125 679 SSIPAFKIY-KNGSRVKEIPGHQCELLEKSVKL 710 (713)
Q Consensus 679 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~ 710 (713)
.++|+++++ ++|+.+.+..| .++|+++|++
T Consensus 112 ~~~P~~~lid~~G~i~~~~~~--~~~l~~~l~e 142 (142)
T 3eur_A 112 RAIPTLYLLDKNKTVLLKDAT--LQKVEQYLAE 142 (142)
T ss_dssp TTCSEEEEECTTCBEEEEEEC--HHHHHHHHHC
T ss_pred CcCCeEEEECCCCcEEecCCC--HHHHHHHHhC
Confidence 999998888 46888877654 6889988864
No 379
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=97.92 E-value=4.8e-05 Score=78.43 Aligned_cols=92 Identities=12% Similarity=0.227 Sum_probs=74.1
Q ss_pred hHHHHHhhcC-CceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCC--CcHhhHHHcCCCc--ccEEEEEECCe
Q 005125 620 ERFRHFVTSP-GMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVE--DHPYIAKSEGVSS--IPAFKIYKNGS 691 (713)
Q Consensus 620 ~~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d--~~~~~~~~~~v~~--~Pt~~~~~~g~ 691 (713)
+.+...+... ...+++|++ |++|..+.+.++++++.+ +.+.|+.||++ +.+.++..+||.. +|++.+|..|.
T Consensus 125 ~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~ 204 (361)
T 3uem_A 125 QTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE 204 (361)
T ss_dssp TTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC-
T ss_pred ccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCC
Confidence 3455554443 344666876 999999999999999998 46999999999 7899999999998 99999999876
Q ss_pred Eeeeec---CC-CHHHHHHHHHhh
Q 005125 692 RVKEIP---GH-QCELLEKSVKLY 711 (713)
Q Consensus 692 ~~~~~~---g~-~~~~~~~~~~~~ 711 (713)
....+. |. +.+.|.+|++.+
T Consensus 205 ~~~ky~~~~~~~~~~~l~~fi~~~ 228 (361)
T 3uem_A 205 EMTKYKPESEELTAERITEFCHRF 228 (361)
T ss_dssp -CCEECCSSCCCCHHHHHHHHHHH
T ss_pred cccccCCCccccCHHHHHHHHHHH
Confidence 655554 55 999999999876
No 380
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=97.91 E-value=2.9e-05 Score=67.91 Aligned_cols=82 Identities=7% Similarity=0.135 Sum_probs=63.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHH---HHHhC--CCcEEEEEeCCCcHhh------------------------HHHcC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQ---VCKRF--PSVNFLKVEVEDHPYI------------------------AKSEG 677 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~---l~~~~--p~~~~~~v~~d~~~~~------------------------~~~~~ 677 (713)
...+++.|++ |++|+...|.+.+ +.+.+ .++.++.|++|..+.. +..++
T Consensus 27 gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 106 (142)
T 3ewl_A 27 AQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYD 106 (142)
T ss_dssp CSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSC
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHcC
Confidence 3456667888 9999999998887 77666 3589999999866543 34789
Q ss_pred CCcccEEEEE-ECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
|..+|+++++ ++|+.+.. +.+.++|+++|++..
T Consensus 107 v~~~P~~~lid~~G~i~~~--~~~~~~l~~~l~~~~ 140 (142)
T 3ewl_A 107 IRATPTIYLLDGRKRVILK--DTSMEQLIDYLATQA 140 (142)
T ss_dssp CCSSSEEEEECTTCBEEEC--SCCHHHHHHHHHC--
T ss_pred CCCCCeEEEECCCCCEEec--CCCHHHHHHHHHHHc
Confidence 9999999988 57887762 348999999998753
No 381
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=97.89 E-value=1.5e-05 Score=62.00 Aligned_cols=70 Identities=13% Similarity=0.274 Sum_probs=54.5
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHH---HcCCCcccEEEEEECCeEeeeecCCCHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK---SEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 706 (713)
.+++|+. |++|+.+.+++++. ++.+..+|+++.+.+.. .+++.++|++ |.+|+. +.|.++++|.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~---~~g~~~~~l~~ 71 (81)
T 1h75_A 2 RITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLS---WSGFRPDMINR 71 (81)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEE---EESCCHHHHGG
T ss_pred EEEEEcCCCChhHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEE---EecCCHHHHHH
Confidence 3566776 99999999998863 46778899988776654 4799999997 458864 56778999998
Q ss_pred HHHhh
Q 005125 707 SVKLY 711 (713)
Q Consensus 707 ~~~~~ 711 (713)
+|+++
T Consensus 72 ~l~~~ 76 (81)
T 1h75_A 72 LHPAP 76 (81)
T ss_dssp GSCCC
T ss_pred HHhcc
Confidence 88764
No 382
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=97.88 E-value=3.9e-05 Score=58.46 Aligned_cols=67 Identities=10% Similarity=0.230 Sum_probs=53.3
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHH---HcCCCcccEEEEEECCeEeeeecCCCHHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK---SEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKS 707 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 707 (713)
+++|+. |++|+.+.++++++ ++.+..+|++..+.+.. .+++.++|++. .+|+. +.|.++++|.++
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~--~~g~~---~~g~~~~~l~~~ 72 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVE--VDGEH---WSGFRPERIKQL 72 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEE--ETTEE---EESCCHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHcCCCccCEEE--ECCeE---EcCCCHHHHHHH
Confidence 556766 99999999998865 36777889988776665 78999999986 37764 668899999988
Q ss_pred HH
Q 005125 708 VK 709 (713)
Q Consensus 708 ~~ 709 (713)
|+
T Consensus 73 l~ 74 (75)
T 1r7h_A 73 QA 74 (75)
T ss_dssp HC
T ss_pred Hh
Confidence 74
No 383
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=97.87 E-value=4e-05 Score=69.82 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=65.3
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-----------------------CcHhhHHHcCCCcccE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE-----------------------DHPYIAKSEGVSSIPA 683 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d-----------------------~~~~~~~~~~v~~~Pt 683 (713)
...+++.|++ |++|....|.+.++.++ ++.++.|+++ ....++..++|..+|+
T Consensus 58 gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 135 (176)
T 3kh7_A 58 GKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPE 135 (176)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCE
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCe
Confidence 3566777888 99999999999999887 6888888753 3346778899999996
Q ss_pred EEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 684 FKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 684 ~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++++ ++|+.+..+.|. +.+.+.+.|++.
T Consensus 136 ~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 165 (176)
T 3kh7_A 136 TYLIDKQGIIRHKIVGVVDQKVWREQLAPL 165 (176)
T ss_dssp EEEECTTCBEEEEEESCCCHHHHHHHTHHH
T ss_pred EEEECCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 6655 689999999998 888888877654
No 384
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=97.84 E-value=3.1e-05 Score=72.04 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=67.0
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC-----------------------------CcHhhHHHcCC
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE-----------------------------DHPYIAKSEGV 678 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d-----------------------------~~~~~~~~~~v 678 (713)
+++.|++ |++|+...|.+.++.++++ ++.++.|+++ ....++..++|
T Consensus 49 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 128 (196)
T 2ywi_A 49 TVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDA 128 (196)
T ss_dssp EEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhCC
Confidence 7777888 9999999999999998874 4899999884 34578889999
Q ss_pred CcccEEEEE-ECCeEeee---------ecCC-CHHHHHHHHHhh
Q 005125 679 SSIPAFKIY-KNGSRVKE---------IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 679 ~~~Pt~~~~-~~g~~~~~---------~~g~-~~~~~~~~~~~~ 711 (713)
..+|+++++ ++|+.+.. +.|. +.++|.+.|++.
T Consensus 129 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~l 172 (196)
T 2ywi_A 129 ACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDAL 172 (196)
T ss_dssp CEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHH
T ss_pred CCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHH
Confidence 999999888 57988877 5677 889999988765
No 385
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.83 E-value=0.00015 Score=60.20 Aligned_cols=93 Identities=16% Similarity=0.066 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH---HHHHHHHHhccC-C-CCHHHHHHHHH
Q 005125 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKE---ACYAYSEGLEHE-A-YNSVLLCNRAA 535 (713)
Q Consensus 461 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~ 535 (713)
.....+...|.+.+..++....+.+ ++|+++....+..+ ++..++..+..+ | ..-+.++.||.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F------------~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAv 82 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQF------------EYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHH------------HHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHH------------HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 3456677788888887887777776 78999988876666 999999999887 5 56789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 536 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+.++|+|++|..+++..|+.+|++..+..
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999977665
No 386
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=97.83 E-value=4.1e-05 Score=70.65 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=65.6
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCC-----------------------------CcHhhHHHcC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVE-----------------------------DHPYIAKSEG 677 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d-----------------------------~~~~~~~~~~ 677 (713)
..+++.|++ |++|+...|.+.++.+++++ +.++.|+.+ ....++..++
T Consensus 34 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 113 (188)
T 2cvb_A 34 PLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYR 113 (188)
T ss_dssp SEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTT
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHcC
Confidence 456777888 99999999999999999865 889999873 3456888999
Q ss_pred CCcccEEEEE-ECCeEeee--------ecCC-CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKE--------IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~--------~~g~-~~~~~~~~~~~~ 711 (713)
|..+|+++++ ++|+.+.. ..|. +.++|.+.|++.
T Consensus 114 v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~l 157 (188)
T 2cvb_A 114 ALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEAL 157 (188)
T ss_dssp CCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred CCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHH
Confidence 9999999888 57888776 2233 578888888765
No 387
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=97.80 E-value=4.4e-05 Score=77.34 Aligned_cols=83 Identities=10% Similarity=0.073 Sum_probs=69.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC---------------------------cHhhHHHcC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED---------------------------HPYIAKSEG 677 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~---------------------------~~~~~~~~~ 677 (713)
...+++.|++ |++|+...|.|.++.++++ ++.++.|+++. ...++..++
T Consensus 82 GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~yg 161 (352)
T 2hyx_A 82 GKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYR 161 (352)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHTT
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHcC
Confidence 3456777888 9999999999999998885 48999998653 246888899
Q ss_pred CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|..+|+++++ ++|+.+..+.|. +.++|.++|++.
T Consensus 162 V~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~l 197 (352)
T 2hyx_A 162 NRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQL 197 (352)
T ss_dssp CCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHH
T ss_pred CCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 9999998887 789999999998 899999988765
No 388
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=97.75 E-value=5.6e-05 Score=66.41 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=57.5
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCc------------------------HhhHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDH------------------------PYIAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~------------------------~~~~~~~~v~ 679 (713)
...+++.|++ |++|+...|.+.++.++++ ++.++.|++|.. ..++..++|.
T Consensus 28 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 107 (146)
T 1o8x_A 28 GKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVE 107 (146)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCC
T ss_pred CCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCCC
Confidence 3456777888 9999999999999998875 588888888763 4688899999
Q ss_pred cccEEEEEE--CCeEeeeecC
Q 005125 680 SIPAFKIYK--NGSRVKEIPG 698 (713)
Q Consensus 680 ~~Pt~~~~~--~g~~~~~~~g 698 (713)
++|+++++. +|+.+.+..+
T Consensus 108 ~~Pt~~lid~~~G~i~~~~~~ 128 (146)
T 1o8x_A 108 SIPTLIGVDADSGDVVTTRAR 128 (146)
T ss_dssp SSSEEEEEETTTCCEEESCHH
T ss_pred CCCEEEEEECCCCeEEEecch
Confidence 999999997 7888776543
No 389
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=97.73 E-value=8.8e-05 Score=67.48 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=60.5
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC---------------------------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED--------------------------------------- 668 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~--------------------------------------- 668 (713)
..+|+.|+. |++|+.+.|.++++.++++++.+...+...
T Consensus 23 ~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~~~ 102 (175)
T 3gyk_A 23 DVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANETG 102 (175)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSHHH
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHHH
Confidence 456667887 999999999999999989887766666432
Q ss_pred ------------------------------cHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 669 ------------------------------HPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 669 ------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
...++..+||.++|||++ +|+ .+.|. +.+.|.+.|++.
T Consensus 103 l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~ 171 (175)
T 3gyk_A 103 VLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRA 171 (175)
T ss_dssp HHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHH
Confidence 224566789999999876 775 56788 999999999865
No 390
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=97.72 E-value=6.8e-05 Score=65.65 Aligned_cols=69 Identities=10% Similarity=0.193 Sum_probs=57.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCc------------------------HhhHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDH------------------------PYIAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~------------------------~~~~~~~~v~ 679 (713)
...+++.|++ |++|+...|.+.++.++++ ++.++.|++|.. ..++..++|.
T Consensus 28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 107 (144)
T 1i5g_A 28 GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVK 107 (144)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCCC
Confidence 3466777888 9999999999999998875 588888888863 4688899999
Q ss_pred cccEEEEEE--CCeEeeeec
Q 005125 680 SIPAFKIYK--NGSRVKEIP 697 (713)
Q Consensus 680 ~~Pt~~~~~--~g~~~~~~~ 697 (713)
++|+++++. +|+.+....
T Consensus 108 ~~P~~~lid~~~G~i~~~~~ 127 (144)
T 1i5g_A 108 SIPTLVGVEADSGNIITTQA 127 (144)
T ss_dssp SSSEEEEEETTTCCEEESCH
T ss_pred CCCEEEEEECCCCcEEeccc
Confidence 999999995 788877653
No 391
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=97.72 E-value=6.6e-05 Score=65.74 Aligned_cols=69 Identities=12% Similarity=0.255 Sum_probs=56.8
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCc------------------------HhhHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDH------------------------PYIAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~------------------------~~~~~~~~v~ 679 (713)
...+++.|++ |++|+...|.+.++.++++ ++.++.|++|.. ..++..++|.
T Consensus 28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 107 (144)
T 1o73_A 28 GKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVE 107 (144)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCC
T ss_pred CCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCC
Confidence 3456777888 9999999999999998875 588888888863 4688889999
Q ss_pred cccEEEEEE--CCeEeeeec
Q 005125 680 SIPAFKIYK--NGSRVKEIP 697 (713)
Q Consensus 680 ~~Pt~~~~~--~g~~~~~~~ 697 (713)
.+|+++++. +|+.+....
T Consensus 108 ~~Pt~~lid~~~G~i~~~~~ 127 (144)
T 1o73_A 108 SIPTLITINADTGAIIGTQA 127 (144)
T ss_dssp SSSEEEEEETTTCCEEESCH
T ss_pred CCCEEEEEECCCCeEEecch
Confidence 999999998 788877653
No 392
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=97.71 E-value=0.00014 Score=63.88 Aligned_cols=84 Identities=11% Similarity=0.063 Sum_probs=64.0
Q ss_pred cCCceEEEeec--CchhHHHHHHH---HHHHHhC-CCcEEEEEeCCC--cHhhHHHcCCCcccEEEEEE-C-CeEeeeec
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLM---EQVCKRF-PSVNFLKVEVED--HPYIAKSEGVSSIPAFKIYK-N-GSRVKEIP 697 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~-p~~~~~~v~~d~--~~~~~~~~~v~~~Pt~~~~~-~-g~~~~~~~ 697 (713)
.....++.|++ |..|+.|.+.+ +++.+.. .+.+++++|++. ...+...|+|.++|+++|+. + |+.+..+.
T Consensus 41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~ 120 (153)
T 2dlx_A 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWH 120 (153)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEES
T ss_pred cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecC
Confidence 45677777888 99999997543 2333222 258999999976 34688899999999999986 3 77888887
Q ss_pred CCCHHHHHHHHHhh
Q 005125 698 GHQCELLEKSVKLY 711 (713)
Q Consensus 698 g~~~~~~~~~~~~~ 711 (713)
|.+++++.+.|+++
T Consensus 121 g~~~~~fl~~L~~~ 134 (153)
T 2dlx_A 121 QLDVSSFLDQVTGF 134 (153)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 77999998888765
No 393
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.71 E-value=0.00032 Score=58.27 Aligned_cols=92 Identities=14% Similarity=0.045 Sum_probs=78.5
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHH
Q 005125 270 YNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIE---ALVECKEAIRID-P-CYHRAHHRLAMLYFRLGEAE 344 (713)
Q Consensus 270 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~ 344 (713)
........+...|.+.+..++....+.+++|.++....+... ++..++..+..+ | ..-++++.||..++++|+|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 344556777888888888888889999999999999887766 999999988876 5 45788999999999999999
Q ss_pred HHHHHHHHHhhhhccccH
Q 005125 345 KAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 345 ~A~~~~~~al~~~~p~~~ 362 (713)
+|+.+++.+++ .+|++.
T Consensus 92 ~A~~~~~~lL~-~eP~n~ 108 (126)
T 1nzn_A 92 KALKYVRGLLQ-TEPQNN 108 (126)
T ss_dssp HHHHHHHHHHH-HCTTCH
T ss_pred HHHHHHHHHHH-hCCCCH
Confidence 99999999999 999885
No 394
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=97.71 E-value=0.00014 Score=63.49 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=63.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcH--------------------------hhHHHcCCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHP--------------------------YIAKSEGVS 679 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~--------------------------~~~~~~~v~ 679 (713)
..+++.|++ |++|....|.+.++.++++ ++.++.|+.|..+ .++..++|.
T Consensus 33 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 112 (143)
T 4fo5_A 33 RYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLR 112 (143)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTGG
T ss_pred CEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcCCC
Confidence 456667888 9999999999999999985 4889999888432 466789999
Q ss_pred cccEEEEEE-CCeEeeeecCCCHHHHHHHHHh
Q 005125 680 SIPAFKIYK-NGSRVKEIPGHQCELLEKSVKL 710 (713)
Q Consensus 680 ~~Pt~~~~~-~g~~~~~~~g~~~~~~~~~~~~ 710 (713)
.+|+++++. +|+.+.+.. ..++|.+.|++
T Consensus 113 ~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ 142 (143)
T 4fo5_A 113 KGFKNFLINDEGVIIAANV--TPEKLTEILKA 142 (143)
T ss_dssp GCCCEEEECTTSBEEEESC--CHHHHHHHHTC
T ss_pred CCCcEEEECCCCEEEEccC--CHHHHHHHHHh
Confidence 999877775 788887654 46888888764
No 395
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=97.69 E-value=8.1e-05 Score=66.94 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=57.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCc------------------------HhhHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDH------------------------PYIAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~------------------------~~~~~~~~v~ 679 (713)
...+++.|++ |++|+...|.+.++.++++ ++.++.|++|.. ..++..++|.
T Consensus 48 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 127 (165)
T 3s9f_A 48 GKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVE 127 (165)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCC
Confidence 3456677888 9999999999999998875 578888888876 6788999999
Q ss_pred cccEEEEEE--CCeEeeeec
Q 005125 680 SIPAFKIYK--NGSRVKEIP 697 (713)
Q Consensus 680 ~~Pt~~~~~--~g~~~~~~~ 697 (713)
.+|+++++. +|+.+.+..
T Consensus 128 ~~Pt~~lid~~~G~iv~~~~ 147 (165)
T 3s9f_A 128 SIPTLIGLNADTGDTVTTRA 147 (165)
T ss_dssp SSSEEEEEETTTCCEEESCH
T ss_pred CCCEEEEEeCCCCEEEeccc
Confidence 999999998 388777644
No 396
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.69 E-value=0.00066 Score=57.52 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=92.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARF------EDALALYDRAIAINSSK--------ATYRSNKSAALIGLGRQIEALVECKEA 319 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a 319 (713)
+.|.+++.|..........|+. ++-++.|++|+..-|-. ...|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 6799999999999999999999 99999999999876632 3455566644 5669999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+.++...+.+|...|..-.++|+...|...+.+++. +.|...
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG-~~~k~~ 128 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE-RGAVPL 128 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBCH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-cCCCcH
Confidence 999888999999999999999999999999999999 888874
No 397
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=97.67 E-value=0.00011 Score=66.44 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=65.2
Q ss_pred CceEEEeec--Cch-hHHHHHHHHHHHHhC------CCcEEEEEeCCCc----------------------------Hhh
Q 005125 630 GMAVVLFCS--KAE-HKQVLQLMEQVCKRF------PSVNFLKVEVEDH----------------------------PYI 672 (713)
Q Consensus 630 ~~~vv~f~~--cg~-c~~~~~~~~~l~~~~------p~~~~~~v~~d~~----------------------------~~~ 672 (713)
..+++.|++ |++ |....|.+.++.+++ +++.++.|.+|.. ..+
T Consensus 27 k~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (171)
T 2rli_A 27 QWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQA 106 (171)
T ss_dssp SEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHHH
T ss_pred CEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHH
Confidence 456666887 998 999999999998876 4788888887731 247
Q ss_pred HHHcCCCccc---------------EE-EEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 673 AKSEGVSSIP---------------AF-KIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 673 ~~~~~v~~~P---------------t~-~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+..++|..+| ++ ++-++|+.+..+.|. +.++|.+.|++.
T Consensus 107 ~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 162 (171)
T 2rli_A 107 SHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRH 162 (171)
T ss_dssp HHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHH
T ss_pred HHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 7789999888 54 444689999999998 888998888765
No 398
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=97.67 E-value=5.1e-05 Score=62.31 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=53.6
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-------HhhHHHcCCCcccEEEEEECCeEeeeec---CC
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-------PYIAKSEGVSSIPAFKIYKNGSRVKEIP---GH 699 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~---g~ 699 (713)
.+++|+. |++|+.+.++|+++...+++ +..+|++.. ..+...+|+.++|++ |.+|+.++... +.
T Consensus 13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i~g~~~~~~~ 88 (105)
T 1kte_A 13 KVVVFIKPTCPFCRKTQELLSQLPFKEGL--LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKECIGGCTDLESM 88 (105)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHSCBCTTS--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEEEESHHHHHHH
T ss_pred CEEEEEcCCCHhHHHHHHHHHHcCCCCCc--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCEEEeccHHHHHH
Confidence 4666776 99999999999987766655 444555544 357778899999996 56898766432 22
Q ss_pred -CHHHHHHHHHhh
Q 005125 700 -QCELLEKSVKLY 711 (713)
Q Consensus 700 -~~~~~~~~~~~~ 711 (713)
...+|.++|+..
T Consensus 89 ~~~g~L~~~l~~~ 101 (105)
T 1kte_A 89 HKRGELLTRLQQV 101 (105)
T ss_dssp HHHTHHHHHHHHH
T ss_pred HHCCcHHHHHHHc
Confidence 356677777653
No 399
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=97.64 E-value=0.00021 Score=65.65 Aligned_cols=82 Identities=10% Similarity=0.238 Sum_probs=65.8
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCc-----HhhHHHcCCC---------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDH-----PYIAKSEGVS--------------------- 679 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~-----~~~~~~~~v~--------------------- 679 (713)
..+++.|++ |++|....|.+.++.+.++ ++.++.|++|.. ..+...+++.
T Consensus 61 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 140 (186)
T 1jfu_A 61 KTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGR 140 (186)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTC
T ss_pred CEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccccc
Confidence 456667888 9999999999999998875 688888888754 3455666664
Q ss_pred --cccEEEEE-ECCeEeeeecCC-C--HHHHHHHHHhh
Q 005125 680 --SIPAFKIY-KNGSRVKEIPGH-Q--CELLEKSVKLY 711 (713)
Q Consensus 680 --~~Pt~~~~-~~g~~~~~~~g~-~--~~~~~~~~~~~ 711 (713)
.+|+++++ ++|+.+..+.|. + .++|.++|+..
T Consensus 141 ~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 178 (186)
T 1jfu_A 141 ALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAA 178 (186)
T ss_dssp CSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHH
Confidence 89998888 689999999887 3 78899988875
No 400
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=96.77 E-value=8.3e-06 Score=73.04 Aligned_cols=82 Identities=10% Similarity=0.107 Sum_probs=63.4
Q ss_pred CceEEEeec--CchhHHHHHHHHH-HHHhCC---CcEEEEEeCCCcHhhHHHcC------------------------CC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQ-VCKRFP---SVNFLKVEVEDHPYIAKSEG------------------------VS 679 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~-l~~~~p---~~~~~~v~~d~~~~~~~~~~------------------------v~ 679 (713)
..+++.|++ |++|+...|.+.+ +...+. ++.++.|++|+.+.....+. +.
T Consensus 34 k~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 113 (159)
T 2ls5_A 34 KVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDA 113 (159)
Confidence 456667888 9999999999998 776654 68888898887654443332 56
Q ss_pred cccEEEEE-ECCeEeeeecCCCHHHHHHHHHhh
Q 005125 680 SIPAFKIY-KNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 680 ~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
++|+++++ ++|+.+....|.+++.+.++|++.
T Consensus 114 ~~P~~~lid~~G~i~~~~~g~~~~~l~~~l~~l 146 (159)
T 2ls5_A 114 GITRNVLIDREGKIVKLTRLYNEEEFASLVQQI 146 (159)
Confidence 79999888 789999988888777888877654
No 401
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=97.59 E-value=0.00018 Score=64.49 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=64.6
Q ss_pred CceEEEeec--Cch-hHHHHHHHHHHHHhC------CCcEEEEEeCCCc----------------------------Hhh
Q 005125 630 GMAVVLFCS--KAE-HKQVLQLMEQVCKRF------PSVNFLKVEVEDH----------------------------PYI 672 (713)
Q Consensus 630 ~~~vv~f~~--cg~-c~~~~~~~~~l~~~~------p~~~~~~v~~d~~----------------------------~~~ 672 (713)
..+++.|++ |++ |....|.+.++.+++ +++.++.|.+|.. ..+
T Consensus 24 k~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~ 103 (164)
T 2ggt_A 24 QWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQV 103 (164)
T ss_dssp CEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHHH
T ss_pred CEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHH
Confidence 456667887 998 999999999988766 3788888887642 137
Q ss_pred HHHcCCCccc----------------EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 673 AKSEGVSSIP----------------AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 673 ~~~~~v~~~P----------------t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+..++|..+| +|++-++|+.+..+.|. ++++|.+.|++.
T Consensus 104 ~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 159 (164)
T 2ggt_A 104 ARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATH 159 (164)
T ss_dssp HHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHH
T ss_pred HHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 7789999999 44555689999999988 889998888765
No 402
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=97.53 E-value=0.00027 Score=63.91 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=65.4
Q ss_pred CceEEEeec--Cch-hHHHHHHHHHHHHhCC-----CcEEEEEeCCCc----------------------------HhhH
Q 005125 630 GMAVVLFCS--KAE-HKQVLQLMEQVCKRFP-----SVNFLKVEVEDH----------------------------PYIA 673 (713)
Q Consensus 630 ~~~vv~f~~--cg~-c~~~~~~~~~l~~~~p-----~~~~~~v~~d~~----------------------------~~~~ 673 (713)
..+++.|++ |++ |....|.+.++.++++ ++.++.|++|.. ..++
T Consensus 36 k~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 115 (172)
T 2k6v_A 36 KVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAA 115 (172)
T ss_dssp SEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHHHH
T ss_pred CEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHHHH
Confidence 456666888 997 9999999999998886 689999987742 2455
Q ss_pred HHcC---------------CCcccEEEEEECCeEeeeecCC---CHHHHHHHHHhh
Q 005125 674 KSEG---------------VSSIPAFKIYKNGSRVKEIPGH---QCELLEKSVKLY 711 (713)
Q Consensus 674 ~~~~---------------v~~~Pt~~~~~~g~~~~~~~g~---~~~~~~~~~~~~ 711 (713)
..++ |..+|+++++.+|+.+..+.|. ++++|.+.|++.
T Consensus 116 ~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 116 QTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQAL 171 (172)
T ss_dssp HHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred HhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHh
Confidence 5555 4578999888899999988877 789999998864
No 403
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.52 E-value=0.00076 Score=58.62 Aligned_cols=95 Identities=9% Similarity=0.023 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSK---------ATYRSNKSAALIGLGRQIEALVECKEAIRID------P 324 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p 324 (713)
.+++.....++..|.|+.|+.....++.+..++ ..++..+|.+++..++|..|...|+++|... +
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 358888899999999999999999987764322 3478899999999999999999999997651 1
Q ss_pred -------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005125 325 -------------------CYHRAHHRLAMLYFRLGEAEKAVSHYKKSS 354 (713)
Q Consensus 325 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 354 (713)
...+..+.+|.||..++++++|+..++.+-
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 113688999999999999999999988753
No 404
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=97.50 E-value=0.00022 Score=67.36 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=64.5
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCC-----------------------------CcHhhHHHcCC
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVE-----------------------------DHPYIAKSEGV 678 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d-----------------------------~~~~~~~~~~v 678 (713)
+++.|++ |++|....|.|.++.+++++ +.|+.|+++ ....++..++|
T Consensus 62 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v 141 (218)
T 3u5r_E 62 LLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGA 141 (218)
T ss_dssp EEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTC
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCC
Confidence 6777888 99999999999999998843 899999984 35678899999
Q ss_pred CcccEEEEE-ECCeEeeee---------cCC-CHHHHHHHHHhh
Q 005125 679 SSIPAFKIY-KNGSRVKEI---------PGH-QCELLEKSVKLY 711 (713)
Q Consensus 679 ~~~Pt~~~~-~~g~~~~~~---------~g~-~~~~~~~~~~~~ 711 (713)
..+|+++++ ++|+.+.+. .+. +.+.|++.|++.
T Consensus 142 ~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~l 185 (218)
T 3u5r_E 142 ACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAV 185 (218)
T ss_dssp CEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHH
Confidence 999999998 678877542 122 578888888765
No 405
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.45 E-value=0.0013 Score=55.74 Aligned_cols=114 Identities=10% Similarity=-0.012 Sum_probs=86.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEA------EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVI 395 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 395 (713)
+.|++++.|..........|+. ++-++.|++|+..+.|.....+..+....-....+...++.++|.+.|+.++
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5788888888888888888888 7888889988884445432222222222222334466799999999999999
Q ss_pred HcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhh
Q 005125 396 SFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEY 436 (713)
Q Consensus 396 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 436 (713)
.+.... +.+|...|..-.+.|+...|...+.+++.+.|..
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 986666 7899999999999999999999999999988854
No 406
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=97.43 E-value=5e-05 Score=63.42 Aligned_cols=77 Identities=10% Similarity=0.243 Sum_probs=54.0
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH-------hhHHHcCCCcccEEEEEECCeEeeeecC---
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP-------YIAKSEGVSSIPAFKIYKNGSRVKEIPG--- 698 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~-------~~~~~~~v~~~Pt~~~~~~g~~~~~~~g--- 698 (713)
..+++|+. |++|+.+.++|+++...++. |..+|++..+ .+...+|+.++|++ |.+|+.++...+
T Consensus 19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~igg~~~~~~ 94 (114)
T 2hze_A 19 NKVTIFVKYTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGKTVPRI--FFGKTSIGGYSDLLE 94 (114)
T ss_dssp TCEEEEECTTCHHHHHHHHHHTTSCBCTTS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEE--EETTEEEESHHHHHH
T ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCcCc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEEeCcHHHHH
Confidence 45666777 99999999998765433332 7777877664 78888999999986 458988764432
Q ss_pred C-CHHHHHHHHHhh
Q 005125 699 H-QCELLEKSVKLY 711 (713)
Q Consensus 699 ~-~~~~~~~~~~~~ 711 (713)
. ...+|.++|+..
T Consensus 95 ~~~~~~L~~~L~~~ 108 (114)
T 2hze_A 95 IDNMDALGDILSSI 108 (114)
T ss_dssp HHHTTCHHHHHHHT
T ss_pred HHHCChHHHHHHHc
Confidence 2 345677777653
No 407
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.42 E-value=0.00079 Score=58.50 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHH
Q 005125 294 TYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---------HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
.+++.-...++..|.|+.|+-....++.+..++ ..++..+|.+++..++|..|...|+++++ ....-...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq-~~k~l~k~ 99 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ-QKKALSKT 99 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHCC---
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHHHhcC
Confidence 456666778888999999999999987764322 35889999999999999999999999988 22211000
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
... .. . .+. .......... ....++.+.++.||.+++++++|+..++......
T Consensus 100 ~s~-~~--~-------~~~----~ss~p~s~~~--~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~----------- 152 (167)
T 3ffl_A 100 SKV-RP--S-------TGN----SASTPQSQCL--PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ----------- 152 (167)
T ss_dssp -------------------------------CC--CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG-----------
T ss_pred CCc-cc--c-------ccc----cCCCcccccc--cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh-----------
Confidence 000 00 0 000 0000000111 1123788999999999999999999999865422
Q ss_pred CcHHHHHHHHHHH
Q 005125 445 GGAYLLIVRAQVY 457 (713)
Q Consensus 445 ~~~~~~~~lg~~~ 457 (713)
..+.+...+|.+|
T Consensus 153 Rt~kvnm~LakLy 165 (167)
T 3ffl_A 153 RTPKINMLLANLY 165 (167)
T ss_dssp CCHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHh
Confidence 3455677777765
No 408
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00018 Score=61.56 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=55.4
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc---Hh----hHHHcCCCcccEEEEEECC
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH---PY----IAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~---~~----~~~~~~v~~~Pt~~~~~~g 690 (713)
..+...+... .+++|+. |++|+.+.++|+++. +.|..+|++.. +. ++..+++.++|++ |.+|
T Consensus 18 ~~~~~~i~~~--~vvvf~~~~Cp~C~~~~~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l--~i~G 88 (130)
T 2cq9_A 18 NQIQETISDN--CVVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRI--FVNG 88 (130)
T ss_dssp HHHHHHHHHS--SEEEEECSSCSHHHHHHHHHHHHT-----CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEE--EETT
T ss_pred HHHHHHHcCC--cEEEEEcCCChHHHHHHHHHHHcC-----CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEE--EECC
Confidence 3455555443 3555766 999999999998863 33455666654 43 7778899999987 4689
Q ss_pred eEeee---ecCC-CHHHHHHHHHhh
Q 005125 691 SRVKE---IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~---~~g~-~~~~~~~~~~~~ 711 (713)
+.+.. +.+. ...+|.++|+.+
T Consensus 89 ~~igg~~~l~~~~~~~~L~~~L~~~ 113 (130)
T 2cq9_A 89 TFIGGATDTHRLHKEGKLLPLVHQC 113 (130)
T ss_dssp EEEEEHHHHHHHHHHTSSHHHHHHH
T ss_pred EEEcChHHHHHHHHcCcHHHHHHHc
Confidence 87764 3333 445677777654
No 409
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=97.41 E-value=0.00045 Score=63.69 Aligned_cols=83 Identities=11% Similarity=0.146 Sum_probs=63.0
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC--------cH---hhH-HH-----------------
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED--------HP---YIA-KS----------------- 675 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~--------~~---~~~-~~----------------- 675 (713)
...+++.|++ |++|....|.|.++.+++. ++.++.|++|. .. ... ..
T Consensus 48 Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~~ 127 (190)
T 2vup_A 48 GSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGEN 127 (190)
T ss_dssp TSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSSTT
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCccc
Confidence 3466777888 9999999999999998874 48899998762 11 112 11
Q ss_pred ------------cCCCccc-------EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 676 ------------EGVSSIP-------AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 676 ------------~~v~~~P-------t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++|.++| +|++-++|+.+..+.|. +++.|.+.|++.
T Consensus 128 ~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 183 (190)
T 2vup_A 128 AHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPL 183 (190)
T ss_dssp BCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 3777888 55655789999999998 899999888765
No 410
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=97.39 E-value=0.00024 Score=66.59 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=58.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC----------------------------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE---------------------------------------- 667 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d---------------------------------------- 667 (713)
..+++.|+. |++|+.+.|.++++.+. ++.+......
T Consensus 87 k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~~~ 164 (211)
T 1t3b_A 87 KHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTP 164 (211)
T ss_dssp SEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCS
T ss_pred CEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHHHH
Confidence 456777888 99999999999998763 3544433221
Q ss_pred ----CcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 668 ----DHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 668 ----~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
....++..+||.++|||++ .+|+ .++|. +++.|.++|++..
T Consensus 165 ~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~~ 210 (211)
T 1t3b_A 165 NIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEETA 210 (211)
T ss_dssp SHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhcc
Confidence 2345677899999999887 6886 67898 9999999998754
No 411
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=96.50 E-value=2.5e-05 Score=68.34 Aligned_cols=66 Identities=14% Similarity=0.290 Sum_probs=54.7
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcH-------------------------hhHHHcCCC
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHP-------------------------YIAKSEGVS 679 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~-------------------------~~~~~~~v~ 679 (713)
.+++.|++ |++|+...|.+.++.+.+ +++.++.|++|..+ .++..++|.
T Consensus 28 ~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 107 (143)
T 2lus_A 28 IIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGIT 107 (143)
Confidence 56777888 999999999999998877 46888888877553 688889999
Q ss_pred cccEEEEEE-CCeEeeee
Q 005125 680 SIPAFKIYK-NGSRVKEI 696 (713)
Q Consensus 680 ~~Pt~~~~~-~g~~~~~~ 696 (713)
++|+++++. +|+.+...
T Consensus 108 ~~P~~~lid~~G~i~~~~ 125 (143)
T 2lus_A 108 GIPALVIVKKDGTLISMN 125 (143)
Confidence 999999987 78877754
No 412
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=97.32 E-value=0.00031 Score=66.24 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=56.8
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC-----------------------------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV----------------------------------------- 666 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~----------------------------------------- 666 (713)
..+++.|+. |++|+.+.|.++++.+. ++.+..+..
T Consensus 87 k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~~~ 164 (216)
T 1eej_A 87 KHVITVFTDITCGYCHKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCD 164 (216)
T ss_dssp CEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCS
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhHHH
Confidence 456777888 99999999999998764 444443322
Q ss_pred ---CCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 667 ---EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 667 ---d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+....++..+||.++||+ ++.+|. .++|. +++.|.++|++.
T Consensus 165 ~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~ 209 (216)
T 1eej_A 165 VDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEH 209 (216)
T ss_dssp CCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHh
Confidence 223457788999999998 566784 56888 899999998765
No 413
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=97.29 E-value=0.00045 Score=54.91 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=50.3
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-----Cc----HhhHHHcCCCcccEEEEEECCeEeeeecCCC
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE-----DH----PYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ 700 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d-----~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 700 (713)
.+++|+. |+.|+.+.++++++.. .+-.+|++ +. +++....++.++|++.+ +|+. +.|++
T Consensus 13 ~v~ly~~~~Cp~C~~~~~~L~~~gi-----~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G~~ 82 (92)
T 3ic4_A 13 EVLMYGLSTCPHCKRTLEFLKREGV-----DFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLGYN 82 (92)
T ss_dssp SSEEEECTTCHHHHHHHHHHHHHTC-----CCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EESCC
T ss_pred eEEEEECCCChHHHHHHHHHHHcCC-----CcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeCCC
Confidence 4666666 9999999999987642 23345554 23 66777889999998765 7753 56789
Q ss_pred HHHHHHHHH
Q 005125 701 CELLEKSVK 709 (713)
Q Consensus 701 ~~~~~~~~~ 709 (713)
+++|.++|+
T Consensus 83 ~~~l~~~l~ 91 (92)
T 3ic4_A 83 EEKLKELIR 91 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999986
No 414
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=97.28 E-value=0.00091 Score=59.65 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=62.4
Q ss_pred eEEEee-c--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC---------------------CcHhhHHHcCCCc----c
Q 005125 632 AVVLFC-S--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE---------------------DHPYIAKSEGVSS----I 681 (713)
Q Consensus 632 ~vv~f~-~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d---------------------~~~~~~~~~~v~~----~ 681 (713)
+++.|+ + |++|....|.+.++.++++ ++.++.|+.| ....++..|+|.+ +
T Consensus 32 vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~ 111 (161)
T 3drn_A 32 IVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPA 111 (161)
T ss_dssp EEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSSCC
T ss_pred EEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCccc
Confidence 677788 6 9999999999999998873 4899999887 4557888999999 9
Q ss_pred cEEEEE-ECCeEeeeecC-C-C---HHHHHHHHHh
Q 005125 682 PAFKIY-KNGSRVKEIPG-H-Q---CELLEKSVKL 710 (713)
Q Consensus 682 Pt~~~~-~~g~~~~~~~g-~-~---~~~~~~~~~~ 710 (713)
|+++++ ++|+.+....| . . .+++.+.|++
T Consensus 112 P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~ 146 (161)
T 3drn_A 112 RITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQ 146 (161)
T ss_dssp CEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHH
Confidence 987777 58999999888 2 3 3455555543
No 415
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=97.27 E-value=0.00039 Score=63.91 Aligned_cols=82 Identities=15% Similarity=0.091 Sum_probs=66.8
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-------------------------cHhhHHHcCCC
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-------------------------HPYIAKSEGVS 679 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-------------------------~~~~~~~~~v~ 679 (713)
..+++.|+ + |++|....|.|.++.+++. ++.++.|++|. ...++..++|.
T Consensus 32 k~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 111 (187)
T 1we0_A 32 KWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVL 111 (187)
T ss_dssp SEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCE
T ss_pred CCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCCC
Confidence 45677788 6 9999999999999988774 68888888875 24577889998
Q ss_pred ------cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 680 ------SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 680 ------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
.+|+++++ ++|+.+....|. +.++|.+.|++.
T Consensus 112 ~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 155 (187)
T 1we0_A 112 NEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA 155 (187)
T ss_dssp ETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred cCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 89999998 689999888775 578888888764
No 416
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=97.25 E-value=0.00057 Score=63.25 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=66.6
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-------------------------cHhhHHHcCCC
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-------------------------HPYIAKSEGVS 679 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-------------------------~~~~~~~~~v~ 679 (713)
..+++.|+ + |++|....|.+.++.++++ ++.++.|++|. ...++..|+|.
T Consensus 46 k~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 125 (195)
T 2bmx_A 46 KWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVL 125 (195)
T ss_dssp CEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCB
T ss_pred CcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCc
Confidence 45677788 6 9999999999999988874 58899888874 23577788999
Q ss_pred -----cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 680 -----SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 680 -----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
.+|+++++ ++|+.+....|. +.++|.+.|++.
T Consensus 126 ~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 168 (195)
T 2bmx_A 126 NADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL 168 (195)
T ss_dssp CTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred ccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99998888 589998888765 578999888875
No 417
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=97.25 E-value=0.00029 Score=61.40 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=54.6
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc---H----hhHHHcCCCcccEEEEEECC
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH---P----YIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~---~----~~~~~~~v~~~Pt~~~~~~g 690 (713)
..+...+... .+++|+. |++|+.+.++|+++. +.+..+|++.. + .++..+|+.++|++ |.+|
T Consensus 40 ~~~~~~i~~~--~Vvvf~~~~Cp~C~~~k~~L~~~~-----i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~i--fi~G 110 (146)
T 2ht9_A 40 NQIQETISDN--CVVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRI--FVNG 110 (146)
T ss_dssp HHHHHHHHHC--SEEEEECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEE--EETT
T ss_pred HHHHHHhcCC--CEEEEECCCChhHHHHHHHHHHcC-----CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeE--EECC
Confidence 4555555443 3555776 999999999999874 23445555544 4 37778999999987 5689
Q ss_pred eEeeee---cCC-CHHHHHHHHHhh
Q 005125 691 SRVKEI---PGH-QCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~---~g~-~~~~~~~~~~~~ 711 (713)
+.++.. .+. ....|.++|+..
T Consensus 111 ~~igG~d~l~~l~~~g~L~~~L~~~ 135 (146)
T 2ht9_A 111 TFIGGATDTHRLHKEGKLLPLVHQC 135 (146)
T ss_dssp EEEESHHHHHHHHHTTCHHHHHHHT
T ss_pred EEEeCchHHHHHHHcChHHHHHHHc
Confidence 876542 233 344566666653
No 418
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=97.20 E-value=0.00094 Score=59.46 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=63.5
Q ss_pred ceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC-----------------------cHhhHHHcCCC---
Q 005125 631 MAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED-----------------------HPYIAKSEGVS--- 679 (713)
Q Consensus 631 ~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~-----------------------~~~~~~~~~v~--- 679 (713)
.+++.|+ + |++|....|.+.++.+++ .++.++.|++|. ...++..++|.
T Consensus 38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~ 117 (160)
T 1xvw_A 38 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQ 117 (160)
T ss_dssp EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETT
T ss_pred CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcccc
Confidence 5677787 6 999999999999999888 358899988874 45688889998
Q ss_pred -ccc---EEEEEECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 680 -SIP---AFKIYKNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 680 -~~P---t~~~~~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
++| +|++-++|+.+....|. ..++|.+.|++.
T Consensus 118 ~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 158 (160)
T 1xvw_A 118 AGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL 158 (160)
T ss_dssp TTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred CCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 999 55555789999888876 346666666654
No 419
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.16 E-value=0.0024 Score=53.10 Aligned_cols=78 Identities=6% Similarity=-0.120 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKAR---FEDALALYDRAIAINSS-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+.+.+.+|.++.+..+ ..++|.+++..++.+|. .-+.++.+|..+.++|+|++|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45678888888887654 45688888888888874 467888899999999999999999999999999887776554
Q ss_pred HH
Q 005125 334 AM 335 (713)
Q Consensus 334 a~ 335 (713)
..
T Consensus 119 ~~ 120 (134)
T 3o48_A 119 SM 120 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 420
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=97.11 E-value=0.0014 Score=62.77 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=59.5
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-----------------------------------------
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE----------------------------------------- 667 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d----------------------------------------- 667 (713)
.+|++|+. |+.|+.+.+.+.++.+. +++.+..++..
T Consensus 99 ~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~~~ 177 (241)
T 1v58_A 99 VIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPANV 177 (241)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSSC
T ss_pred eEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCccccC
Confidence 35667877 99999999999988776 46766655442
Q ss_pred ---------CcHhhHHHcCCCcccEEEEEE-CCeEeeeecCC-CHHHHHHHHHhh
Q 005125 668 ---------DHPYIAKSEGVSSIPAFKIYK-NGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 668 ---------~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
....++..+||.++|||++.. +|+ +..++|+ +.+.|.++|++.
T Consensus 178 ~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~-~~~~~G~~~~~~L~~~l~~~ 231 (241)
T 1v58_A 178 STEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT-LQQAVGLPDQKTLNIIMGNK 231 (241)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE-EEEEESSCCHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHHHHH
Confidence 123456778999999999887 364 4678998 999999998765
No 421
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.10 E-value=0.0056 Score=51.61 Aligned_cols=79 Identities=6% Similarity=-0.123 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKAR---FEDALALYDRAIAINSS-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
..+++.+++|.++.+..+ ..+++.+++..+...|. .-+.++.+|..++++|+|++|..+++.+|+..|++..+...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 456678888888887654 45688888888888874 46788888999999999999999999999999988777654
Q ss_pred HHH
Q 005125 333 LAM 335 (713)
Q Consensus 333 la~ 335 (713)
...
T Consensus 117 k~~ 119 (144)
T 1y8m_A 117 KSM 119 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 422
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=97.09 E-value=0.0057 Score=51.32 Aligned_cols=93 Identities=10% Similarity=0.217 Sum_probs=73.5
Q ss_pred cceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEEC
Q 005125 612 NLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~ 689 (713)
....+.+.+++..++......|+-|+. |++| .+.|.+++..++++.|+.++. +.++..+++. .|++++|+.
T Consensus 22 ~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~~d~~F~~t~~---~~v~~~~~v~-~~~vvlfkk 94 (124)
T 2l4c_A 22 EPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKFPGVSFGISTD---SEVLTHYNIT-GNTICLFRL 94 (124)
T ss_dssp CCEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHCTTSEEEEECC---HHHHHHTTCC-SSCEEEEET
T ss_pred cceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhCCCceEEEECh---HHHHHHcCCC-CCeEEEEEc
Confidence 334477778888888776666766776 7777 677888888888899998865 7789999998 899999997
Q ss_pred Ce-EeeeecC----C-CHHHHHHHHHhh
Q 005125 690 GS-RVKEIPG----H-QCELLEKSVKLY 711 (713)
Q Consensus 690 g~-~~~~~~g----~-~~~~~~~~~~~~ 711 (713)
+. ....+.| . +.+.|.+||+..
T Consensus 95 fde~~~~~~g~~~~~~~~~~L~~FI~~n 122 (124)
T 2l4c_A 95 VDNEQLNLEDEDIESIDATKLSRFIEIN 122 (124)
T ss_dssp TTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCceeecCcccCCCCHHHHHHHHHHh
Confidence 53 4455776 4 999999999875
No 423
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.00081 Score=60.68 Aligned_cols=82 Identities=10% Similarity=0.188 Sum_probs=59.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC-----------CcHhhH--------------------
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE-----------DHPYIA-------------------- 673 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d-----------~~~~~~-------------------- 673 (713)
.+.+++.|++ |++|+ ..|.|.++.+++. ++.++.|++| ....+.
T Consensus 32 Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~~ 110 (171)
T 3cmi_A 32 GKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGN 110 (171)
T ss_dssp TCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSSTT
T ss_pred CCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCcc
Confidence 3456677888 99999 9999999998874 4888888653 111111
Q ss_pred ----------HHcCCCccc-------EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 674 ----------KSEGVSSIP-------AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 674 ----------~~~~v~~~P-------t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
..++|..+| +|++-++|+.+..+.|. +++.|.+.|++.
T Consensus 111 ~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 166 (171)
T 3cmi_A 111 EDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEEL 166 (171)
T ss_dssp BCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHH
T ss_pred chHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 135788899 45555789999999997 888888888765
No 424
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=97.07 E-value=0.00077 Score=62.53 Aligned_cols=82 Identities=12% Similarity=0.171 Sum_probs=65.6
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC----------------------------cHhhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED----------------------------HPYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~----------------------------~~~~~~~~ 676 (713)
..+++.|+ + |++|....|.+.++.+++ .++.++.|+.|. ...++..+
T Consensus 34 k~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (198)
T 1zof_A 34 NGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDY 113 (198)
T ss_dssp SEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHT
T ss_pred CcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHHHh
Confidence 45677788 6 999999999999988776 358888888874 34677889
Q ss_pred CCC-----cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GVS-----SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+|. .+|+++++ ++|+.+....|. +.++|.+.|++.
T Consensus 114 ~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 159 (198)
T 1zof_A 114 DVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159 (198)
T ss_dssp TCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred CCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 999 99988777 589998888775 568888888764
No 425
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=97.04 E-value=0.0027 Score=50.00 Aligned_cols=73 Identities=12% Similarity=0.268 Sum_probs=54.8
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHc-----CCCcccEEEEEECCeEeeeecCCCHHH
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE-----GVSSIPAFKIYKNGSRVKEIPGHQCEL 703 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~-----~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 703 (713)
..|++|.. |+.|..+..+|.+. ++.|.++|++..+...+.+ |.+++|+++ +.+|.. +.|.+.++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~-----gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~-i~Dg~~---l~~~~~~e 74 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTAN-----RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVK-FADGST---LTNPSADE 74 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEE-ETTSCE---EESCCHHH
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhc-----CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEE-EeCCEE---EeCCCHHH
Confidence 45677777 99999999988653 4778899999887655433 788999754 456653 45778999
Q ss_pred HHHHHHhhh
Q 005125 704 LEKSVKLYS 712 (713)
Q Consensus 704 ~~~~~~~~~ 712 (713)
|+++|++..
T Consensus 75 l~~~L~el~ 83 (92)
T 2lqo_A 75 VKAKLVKIA 83 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998764
No 426
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=97.02 E-value=0.00093 Score=60.95 Aligned_cols=83 Identities=11% Similarity=0.117 Sum_probs=62.5
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC--------cH---hhHHH-------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED--------HP---YIAKS------------------- 675 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~--------~~---~~~~~------------------- 675 (713)
+.+++.|++ |++|....|.|.++.++++ ++.++.|++|. .. ..+..
T Consensus 50 k~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~~~ 129 (181)
T 2p31_A 50 SVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGA 129 (181)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTS
T ss_pred CEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCccc
Confidence 456667888 9999999999999998874 38889998753 11 12222
Q ss_pred -----cCCCccc--------EEEEEECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 676 -----EGVSSIP--------AFKIYKNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 676 -----~~v~~~P--------t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+++..+| +|++-++|+.+..+.|. ++++|.+.|++..
T Consensus 130 ~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 180 (181)
T 2p31_A 130 HPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 180 (181)
T ss_dssp CHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred hhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 1244578 66666889999999998 9999999998764
No 427
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.98 E-value=0.056 Score=46.45 Aligned_cols=175 Identities=14% Similarity=0.078 Sum_probs=109.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h---------
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR--I--------- 322 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~--------- 322 (713)
+-|..++.-..++..++-.|.|..|+-++.. -+...+.+..+.||..+++|..|+..++..++ .
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 5566667778888999999999988877653 35577788889999999999999999999883 2
Q ss_pred ------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHH-----------HHHHHHHHHHhhcH
Q 005125 323 ------DPCYHR-AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHK-----------HLTKCNEARELKRW 384 (713)
Q Consensus 323 ------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 384 (713)
+|.+.+ .+..+|.++...|+.++|+.+|..... .+|-.......+.. ....+..-.+...+
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~-~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~ 181 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG-KSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYV 181 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCHHHHHHHHHTTCCCCCC-----------CHHHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC-CccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhh
Confidence 233333 456789999999999999999988877 66554321111000 00001100011111
Q ss_pred HHHH--------HHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCCh
Q 005125 385 NDLL--------KETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCL 434 (713)
Q Consensus 385 ~~A~--------~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 434 (713)
.... ...++-...-|.-........+..|+.+|-.++...+|...-..+|
T Consensus 182 ~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 182 SDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 1111 2222333334544334445567888999999999999987766555
No 428
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.88 E-value=0.0058 Score=50.80 Aligned_cols=68 Identities=12% Similarity=-0.014 Sum_probs=59.2
Q ss_pred HHHHHHHHcc---cHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 498 LRGNLLFKAS---KYKEACYAYSEGLEHEAY-NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 498 ~lg~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+.|+++.+.. +..+++..++..+...|. .-+.++.||..+.++|+|++|..+.+..+++.|++..+..
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 6788887765 456799999999988884 4789999999999999999999999999999999977655
No 429
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=96.88 E-value=0.00042 Score=58.04 Aligned_cols=68 Identities=15% Similarity=0.318 Sum_probs=48.1
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHH-HHHHHHHHHhCCCcEEEEEeCCCcH-------hhHHHcCCCcccEEEEEECC
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQV-LQLMEQVCKRFPSVNFLKVEVEDHP-------YIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~-~~~~~~l~~~~p~~~~~~v~~d~~~-------~~~~~~~v~~~Pt~~~~~~g 690 (713)
.+...+... .|++|+. |++|+.+ .++|+++.. +.+.|..+|++..+ .+...+|+.++|++ |.+|
T Consensus 17 ~~~~~i~~~--~Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~g 90 (118)
T 3c1r_A 17 HVKDLIAEN--EIFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YING 90 (118)
T ss_dssp HHHHHHHHS--SEEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETT
T ss_pred HHHHHHccC--cEEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EECC
Confidence 444444333 4566766 9999999 888866531 23777788887654 57888999999975 7799
Q ss_pred eEee
Q 005125 691 SRVK 694 (713)
Q Consensus 691 ~~~~ 694 (713)
+.++
T Consensus 91 ~~ig 94 (118)
T 3c1r_A 91 KHIG 94 (118)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 430
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=96.87 E-value=0.0017 Score=58.28 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=61.5
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC--------cH---hhHH-Hc----------------
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED--------HP---YIAK-SE---------------- 676 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~--------~~---~~~~-~~---------------- 676 (713)
...+++.|++ |++|....|.+.++.+++. ++.++.|++|. .. .... .+
T Consensus 32 gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 111 (170)
T 2p5q_A 32 GKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGEN 111 (170)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSSTT
T ss_pred CCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCCc
Confidence 3456667888 9999999999999998874 48899998752 11 1222 22
Q ss_pred -------------CC--Cccc---E-EEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 677 -------------GV--SSIP---A-FKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 677 -------------~v--~~~P---t-~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+| ..+| + |++-++|+.+..+.|. +++.|.+.|++.
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 166 (170)
T 2p5q_A 112 ASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQL 166 (170)
T ss_dssp BCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred hHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHH
Confidence 34 6678 4 4544789999999998 888999988875
No 431
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=96.83 E-value=0.0011 Score=52.17 Aligned_cols=56 Identities=13% Similarity=0.325 Sum_probs=43.4
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC--CcHhhHHHc-CCCcccEEEEEECCeEee
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE--DHPYIAKSE-GVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d--~~~~~~~~~-~v~~~Pt~~~~~~g~~~~ 694 (713)
.+++|+. |+.|+.+.+++++. ++.|..+|++ ..+++...+ ++.++|++ |.+|+.+.
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~-----~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l--~~~g~~i~ 67 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKK-----GVKYTDIDASTSLRQEMVQRANGRNTFPQI--FIGDYHVG 67 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHH-----TCCEEEECSCHHHHHHHHHHHHSSCCSCEE--EETTEECC
T ss_pred eEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCHHHHHHHHHHhCCCCCcCEE--EECCEEEe
Confidence 4666776 99999999999875 2567788888 566788888 99999987 45887543
No 432
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=96.81 E-value=0.0031 Score=50.70 Aligned_cols=59 Identities=12% Similarity=0.225 Sum_probs=44.5
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHc-----CCCcccEEEEEECCeEee
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE-----GVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~-----~v~~~Pt~~~~~~g~~~~ 694 (713)
....|++|+. |+.|+.+.++|++.. +.|..+|++..+.....+ |+.++|++ |.+|+.++
T Consensus 14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~-----i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~ig 79 (99)
T 3qmx_A 14 VSAKIEIYTWSTCPFCMRALALLKRKG-----VEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHIG 79 (99)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHHHHHT-----CCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEEE
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-----CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEEe
Confidence 3456777777 999999999998763 556778888777655544 89999976 67887664
No 433
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.81 E-value=0.14 Score=52.26 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC----HH-
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATY-----RSNKSAALIG-LGRQIEALVECKEAIRIDPCY----HR- 328 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~----~~- 328 (713)
.+.+.+|..|...|++++-.+++......-+.-+.+ ...+-..+.. -+..+.-++.+..+++-..+. ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999888765544333222 2223333322 255566667777776542222 11
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC----C--CC
Q 005125 329 -AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG----A--DS 401 (713)
Q Consensus 329 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p--~~ 401 (713)
.-..+|..|+..|+|.+|+..+.+..+.+...+ .....+..++.....+...+++.++...+.++.... + .-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d-d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLD-DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 233789999999999999999988877332211 123344555556666666677777766666664432 1 11
Q ss_pred hHHHHHHHHHHHH-HccCHHHHHHHhhccc
Q 005125 402 APQVYALQAEALL-RLQRHQEAHDSYNKSP 430 (713)
Q Consensus 402 ~~~~~~~la~~~~-~~g~~~~A~~~~~~al 430 (713)
.+.+...-|..++ ..++|.+|..+|-+++
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1233344456666 5666666666666554
No 434
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=96.79 E-value=0.003 Score=58.71 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=65.0
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC----------------------------cHhhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED----------------------------HPYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~----------------------------~~~~~~~~ 676 (713)
..+++.|+ + |+.|....+.|.++.+++ .++.++.|++|. ...++..|
T Consensus 37 k~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~y 116 (202)
T 1uul_A 37 KWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSY 116 (202)
T ss_dssp SEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHH
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHHc
Confidence 45677788 6 999999999999998887 468999998874 23577788
Q ss_pred CCC------cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GVS------SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+|. .+|+++++ ++|+.+....|. +.++|.+.|+..
T Consensus 117 gv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l 163 (202)
T 1uul_A 117 GVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 163 (202)
T ss_dssp TCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 999 99988777 579888877654 468888888764
No 435
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=96.78 E-value=0.0025 Score=58.34 Aligned_cols=82 Identities=9% Similarity=0.091 Sum_probs=60.7
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC--------cHhhHH-----------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED--------HPYIAK----------------------- 674 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~--------~~~~~~----------------------- 674 (713)
..+++.|++ |++|....|.+.++.+++. ++.++.|.+|. ...+..
T Consensus 47 k~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~ 126 (187)
T 3dwv_A 47 SPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENA 126 (187)
T ss_dssp SCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC-C
T ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCcch
Confidence 466777888 9999999999999998874 48888887651 122211
Q ss_pred -------------HcCCCccc---EEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 675 -------------SEGVSSIP---AFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 675 -------------~~~v~~~P---t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.+++..+| ++.++ ++|..+..+.|. +++.|.+.|++.
T Consensus 127 ~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~l 181 (187)
T 3dwv_A 127 HPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPL 181 (187)
T ss_dssp CHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 12344677 55554 789999999998 999999999875
No 436
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=96.77 E-value=0.0034 Score=59.17 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=65.5
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC----------------------------cHhhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED----------------------------HPYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~----------------------------~~~~~~~~ 676 (713)
..+++.|+ + |+.|....+.|.++.+++ .++.++.|.+|. ...++..|
T Consensus 57 k~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~y 136 (220)
T 1zye_A 57 KYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDY 136 (220)
T ss_dssp SEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHT
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHHh
Confidence 56677788 5 999999999999999887 578898888764 23577889
Q ss_pred CCC------cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GVS------SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+|. .+|+++++ ++|+.+....|. +.++|.+.|+..
T Consensus 137 gv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l 183 (220)
T 1zye_A 137 GVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF 183 (220)
T ss_dssp TCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred CCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 998 99999988 579888776554 568888888764
No 437
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.76 E-value=0.2 Score=43.08 Aligned_cols=115 Identities=12% Similarity=0.020 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHcccHHHHH-------
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK-----AMASARLRGNLLFKASKYKEAC------- 513 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~------- 513 (713)
....+..+|.++...|+.++|+.+|......+|-.+.+-+++-.-. .-.-....|.--.+...+...+
T Consensus 113 kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s 192 (242)
T 3kae_A 113 EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLS 192 (242)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhcc
Confidence 4456778899999999999999999999988887665543210000 0000000000000001111111
Q ss_pred -HHHHHHhccCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 514 -YAYSEGLEHEAYNSVL-LCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 514 -~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
...++-.+.-|.-... ..+.|..|+.+|-.++...+|...-..+|..
T Consensus 193 ~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 193 PSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 2222333344544333 3456788999999999999999999999864
No 438
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=96.76 E-value=0.0037 Score=55.99 Aligned_cols=82 Identities=9% Similarity=0.105 Sum_probs=59.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC--------cHh---h-HHHc-----------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED--------HPY---I-AKSE----------------- 676 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~--------~~~---~-~~~~----------------- 676 (713)
..+++.|++ |++|....|.+.++.+++. ++.++.|++|. ... . ...+
T Consensus 32 k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 111 (169)
T 2v1m_A 32 HVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDA 111 (169)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSSTTS
T ss_pred CEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCccc
Confidence 456667888 9999999999999998874 48888888753 111 1 1211
Q ss_pred ------------C-----CCcccEE-EEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 677 ------------G-----VSSIPAF-KIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 677 ------------~-----v~~~Pt~-~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+ |..+|++ ++-++|+.+..+.|. +++.|.+.|++.
T Consensus 112 ~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 165 (169)
T 2v1m_A 112 DDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMEL 165 (169)
T ss_dssp CHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred cHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 3 3335654 444689999999998 888898888765
No 439
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=96.75 E-value=0.0032 Score=57.91 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=60.0
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCc------------------------------------
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDH------------------------------------ 669 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~------------------------------------ 669 (713)
...+|+.|+. |++|..+.|.++++.+++++ +.|..+++.-.
T Consensus 25 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~~ 104 (192)
T 3h93_A 25 GKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKK 104 (192)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCCC
T ss_pred CCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcC
Confidence 3456777888 99999999999999999974 67776665310
Q ss_pred -------------------------------------HhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 670 -------------------------------------PYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 670 -------------------------------------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
...+...||.++|||++ +|+.+....|. +.+.+.+.|+..
T Consensus 105 ~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~l 182 (192)
T 3h93_A 105 LATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADYL 182 (192)
T ss_dssp CCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHHH
Confidence 11244568999999876 88877665577 888888877654
No 440
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.72 E-value=0.037 Score=46.69 Aligned_cols=68 Identities=12% Similarity=-0.014 Sum_probs=58.3
Q ss_pred HHHHHHHHccc---HHHHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 498 LRGNLLFKASK---YKEACYAYSEGLEHEAY-NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 498 ~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+.|+++.+..+ ..+++..++..+...|. .-+.++.||..+.++|+|++|..+++..|+..|++..+..
T Consensus 44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 44 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 68888887654 56899999999998884 5789999999999999999999999999999998865543
No 441
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=96.72 E-value=0.0029 Score=57.76 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=59.5
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC--------cHhh---HHH-------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED--------HPYI---AKS------------------- 675 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~--------~~~~---~~~------------------- 675 (713)
..+++.|++ |++|....|.|.++.+++. ++.++.|++|. ...+ +..
T Consensus 48 k~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~ 127 (183)
T 2obi_A 48 FVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAH 127 (183)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTTSC
T ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcchh
Confidence 456666888 9999999999999998874 48888887652 1111 111
Q ss_pred --c----------C-----CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 676 --E----------G-----VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 676 --~----------~-----v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+ + |..+|++.++ ++|+.+..+.|. ++++|.+.|++.
T Consensus 128 ~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 182 (183)
T 2obi_A 128 PLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 182 (183)
T ss_dssp HHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred HHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence 1 3 3346876655 689999999998 889998888764
No 442
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=96.70 E-value=0.017 Score=54.54 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=70.5
Q ss_pred hhHHHHHhhcCCce-EEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCC--cHhhHHHcCCC--cccEEEEEECC
Q 005125 619 NERFRHFVTSPGMA-VVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVED--HPYIAKSEGVS--SIPAFKIYKNG 690 (713)
Q Consensus 619 ~~~~~~~l~~~~~~-vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~--~~~~~~~~~v~--~~Pt~~~~~~g 690 (713)
.+.+........+. +++|.. |++|..+.+.+.++++.+ +.+.|+.+|.+. .+.++..+|+. .+|++.++..+
T Consensus 120 ~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~ 199 (227)
T 4f9z_D 120 PVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTL 199 (227)
T ss_dssp HHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESS
T ss_pred cccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECC
Confidence 34555555444333 344655 889999999999999988 569999999974 77788999998 79999999853
Q ss_pred e-Eeeeec-CC-CHHHHHHHHHhhh
Q 005125 691 S-RVKEIP-GH-QCELLEKSVKLYS 712 (713)
Q Consensus 691 ~-~~~~~~-g~-~~~~~~~~~~~~~ 712 (713)
. ....++ |. +++.|.+||+.+.
T Consensus 200 ~~~ky~~~~~~~t~~~i~~Fv~~~~ 224 (227)
T 4f9z_D 200 DDEWDTLPTAEVSVEHVQNFCDGFL 224 (227)
T ss_dssp SCCEEEETTCCCCHHHHHHHHHHHH
T ss_pred CCccccCCcCCCCHHHHHHHHHHHh
Confidence 3 233444 45 9999999999874
No 443
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.70 E-value=0.12 Score=56.38 Aligned_cols=242 Identities=13% Similarity=-0.006 Sum_probs=131.1
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------
Q 005125 271 NKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL---------- 340 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------- 340 (713)
+.+++..-+.+|.. .|.+...-+..+.+....|+..+|....+++.......+.....+-..+...
T Consensus 84 ~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~ 159 (618)
T 1qsa_A 84 RREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLE 159 (618)
T ss_dssp HTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHH
T ss_pred hCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHH
Confidence 46677776665554 3777777788888888888888787777776655444444444444444433
Q ss_pred --------CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-cCCCChHHHHHHHHH
Q 005125 341 --------GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVIS-FGADSAPQVYALQAE 411 (713)
Q Consensus 341 --------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~la~ 411 (713)
|+...|...... +.+........+. .+...-..+ ...+. ..+..........+.
T Consensus 160 R~~~al~~~~~~~a~~l~~~----l~~~~~~~a~~~~------al~~~p~~~-------~~~~~~~~~~~~~~~~~~~~~ 222 (618)
T 1qsa_A 160 RIRLAMKAGNTGLVTVLAGQ----MPADYQTIASAII------SLANNPNTV-------LTFARTTGATDFTRQMAAVAF 222 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHT----CCGGGHHHHHHHH------HHHHCGGGH-------HHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHh----CCHHHHHHHHHHH------HHHhChHhH-------HHHHhccCCChhhHHHHHHHH
Confidence 333333322211 1111100000000 000000000 00111 112211122333455
Q ss_pred HHHHccCHHHHHHHhhcccc---CChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPK---FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 488 (713)
......+.+.|...+..... +.+.. .......++..+...+...++...+.++..... +......
T Consensus 223 ~rlar~d~~~A~~~~~~~~~~~~~~~~~---------~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~-- 290 (618)
T 1qsa_A 223 ASVARQDAENARLMIPSLAQAQQLNEDQ---------IQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIER-- 290 (618)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCHHH---------HHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHH--
T ss_pred HHHHhcCHHHHHHHHHhhhhccCCCHHH---------HHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHH--
Confidence 55556688888888866532 22211 122333444444445535677777777655433 3333321
Q ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 489 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
..+ ..++.|+++.|...|...-......+...+.+|.++..+|+.++|...|+++..
T Consensus 291 ---------~~r-~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 291 ---------RVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp ---------HHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---------HHH-HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 233 345679999999999876665445678889999999999999999999998875
No 444
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=96.68 E-value=0.0033 Score=57.83 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=65.2
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC----------------------------cHhhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED----------------------------HPYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~----------------------------~~~~~~~~ 676 (713)
..+++.|+ + |++|....|.|.++.+++ .++.++.|++|. ...++..|
T Consensus 32 k~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 111 (192)
T 2h01_A 32 KYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSY 111 (192)
T ss_dssp CEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHT
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHh
Confidence 45677788 5 999999999999988877 568888888874 23577889
Q ss_pred CCC-----cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GVS-----SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+|. .+|++.++ ++|+.+....|. +.++|.+.|+..
T Consensus 112 gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 157 (192)
T 2h01_A 112 DVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 157 (192)
T ss_dssp TCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred CCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 999 89999888 689988887764 478888877754
No 445
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=96.62 E-value=0.0049 Score=57.10 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=56.0
Q ss_pred CCceEEEeec--Cch-hHHHHHHHHHHHHhC-----CCcEEEEEeCCC----------------------------cHhh
Q 005125 629 PGMAVVLFCS--KAE-HKQVLQLMEQVCKRF-----PSVNFLKVEVED----------------------------HPYI 672 (713)
Q Consensus 629 ~~~~vv~f~~--cg~-c~~~~~~~~~l~~~~-----p~~~~~~v~~d~----------------------------~~~~ 672 (713)
...+++.|++ |++ |....|.|.++.+.+ .++.++.|++|. ...+
T Consensus 41 Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~ 120 (200)
T 2b7k_A 41 GKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNA 120 (200)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHH
T ss_pred CCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHH
Confidence 3456777887 997 999999998865543 368888887762 1246
Q ss_pred HHHcCCC-ccc----------------EEEEEECCeEeeeecCC-CHHHHHHHHHh
Q 005125 673 AKSEGVS-SIP----------------AFKIYKNGSRVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 673 ~~~~~v~-~~P----------------t~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 710 (713)
+..|||. ..| +|++-++|+.+..+.|. +++.+.+.|.+
T Consensus 121 ~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~ 176 (200)
T 2b7k_A 121 CKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVE 176 (200)
T ss_dssp HHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHH
T ss_pred HHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHH
Confidence 6778887 444 35666789999999886 76666666654
No 446
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.60 E-value=0.1 Score=59.68 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=31.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 303 LIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 303 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
....|++++|.+.++ ..++...|..+|..+...++++.|..+|.++-.
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 345566666665543 234567777778877788888888777776544
No 447
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=96.60 E-value=0.0084 Score=48.57 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=47.2
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-----HhhH----HHcCCCcccEEEEEECCeEeeeecC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-----PYIA----KSEGVSSIPAFKIYKNGSRVKEIPG 698 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-----~~~~----~~~~v~~~Pt~~~~~~g~~~~~~~g 698 (713)
...+++|+. |++|+.+.+++++.. +.+-.++++.. +++. ...++.++|++.+ +|. ..+.|
T Consensus 21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~-----i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~--~~igg 91 (103)
T 3nzn_A 21 RGKVIMYGLSTCVWCKKTKKLLTDLG-----VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE--KAIVG 91 (103)
T ss_dssp CSCEEEEECSSCHHHHHHHHHHHHHT-----BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT--EEEES
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcC-----CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC--EEEEc
Confidence 345677777 999999999998763 33444555431 2232 3458999998654 551 23557
Q ss_pred CCHHHHHHHHH
Q 005125 699 HQCELLEKSVK 709 (713)
Q Consensus 699 ~~~~~~~~~~~ 709 (713)
.++++|.++|+
T Consensus 92 ~~~~~l~~~L~ 102 (103)
T 3nzn_A 92 FKEKEIRESLG 102 (103)
T ss_dssp CCHHHHHHHTT
T ss_pred CCHHHHHHHhC
Confidence 79999998874
No 448
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=96.53 E-value=0.0068 Score=49.30 Aligned_cols=66 Identities=14% Similarity=0.304 Sum_probs=46.2
Q ss_pred HHHHHhhcCCceEEEee-----c-CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhh----HHHcCCCcccEEEEEECC
Q 005125 621 RFRHFVTSPGMAVVLFC-----S-KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYI----AKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~-----~-cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~----~~~~~v~~~Pt~~~~~~g 690 (713)
.+...+... .+++++. . |++|+.+.++|.++. +.|..+|++..+.+ ....|+.++|++ |.+|
T Consensus 9 ~~~~~i~~~-~vvvf~~g~~~~~~C~~C~~~~~~L~~~~-----i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~i~g 80 (105)
T 2yan_A 9 RLKVLTNKA-SVMLFMKGNKQEAKCGFSKQILEILNSTG-----VEYETFDILEDEEVRQGLKAYSNWPTYPQL--YVKG 80 (105)
T ss_dssp HHHHHHTSS-SEEEEESBCSSSBCTTHHHHHHHHHHHHT-----CCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EETT
T ss_pred HHHHHhccC-CEEEEEecCCCCCCCccHHHHHHHHHHCC-----CCeEEEECCCCHHHHHHHHHHHCCCCCCeE--EECC
Confidence 445555433 4444443 4 999999999998763 56778888877764 445789999986 6788
Q ss_pred eEee
Q 005125 691 SRVK 694 (713)
Q Consensus 691 ~~~~ 694 (713)
+.++
T Consensus 81 ~~ig 84 (105)
T 2yan_A 81 ELVG 84 (105)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
No 449
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=96.52 E-value=0.0064 Score=56.13 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=64.0
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCc----------------------------HhhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDH----------------------------PYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~----------------------------~~~~~~~ 676 (713)
..+++.|+ + |++|....+.|.++.+++ .++.++.|++|.. ..++..|
T Consensus 35 k~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~ 114 (197)
T 1qmv_A 35 KYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDY 114 (197)
T ss_dssp SEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHT
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhCCCCCCceEEEECCcHHHHHHc
Confidence 45677788 6 999999999999998877 4689999988742 2577888
Q ss_pred CCC------cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GVS------SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+|. .+|+++++ ++|..+....|. +.++|.+.|+..
T Consensus 115 gv~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~e~l~~l~~l 161 (197)
T 1qmv_A 115 GVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF 161 (197)
T ss_dssp TCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCccCCCCceeeEEEEECCCCcEEEEEeCCCCCCCCHHHHHHHHHhc
Confidence 998 79977666 679888877664 568888888754
No 450
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=96.50 E-value=0.0044 Score=53.87 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=31.8
Q ss_pred HhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 670 PYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 670 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
..++..+||+++|||++ .+|+ .++|+ +.+.|.++|++..
T Consensus 99 ~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~~ 138 (147)
T 3gv1_A 99 TSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKNQ 138 (147)
T ss_dssp HHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHTS
T ss_pred HHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHHH
Confidence 35667789999999987 6786 47899 9999999998753
No 451
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=96.49 E-value=0.0092 Score=45.80 Aligned_cols=66 Identities=14% Similarity=0.275 Sum_probs=45.5
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH----hhHHHcCCCcccEEEEEECCeEeeeecCCCHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP----YIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~----~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 706 (713)
+++|+. |+.|+.+.+++++. ++.+..+|++..+ ++....++.++|++ |.+|+.+. |. +.|.+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l--~~~g~~i~---g~--~~i~~ 70 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQI--FIDAQHIG---GY--DDLYA 70 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEE--EETTEEEE---SH--HHHHH
T ss_pred EEEEECCCChhHHHHHHHHHHC-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe---CH--HHHHH
Confidence 556665 99999999999875 2456667776543 35567899999987 45887653 33 55666
Q ss_pred HHHh
Q 005125 707 SVKL 710 (713)
Q Consensus 707 ~~~~ 710 (713)
+++.
T Consensus 71 ~~~~ 74 (82)
T 1fov_A 71 LDAR 74 (82)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 6543
No 452
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=96.48 E-value=0.0071 Score=56.59 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=63.7
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC----------------------------cHhhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED----------------------------HPYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~----------------------------~~~~~~~~ 676 (713)
..+++.|+ + |+.|....|.|.++.+++ .++.++.|.+|. ...++..|
T Consensus 53 k~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~y 132 (213)
T 2i81_A 53 KYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDY 132 (213)
T ss_dssp CEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHT
T ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHHh
Confidence 45677788 5 999999999999998887 568888888764 23577788
Q ss_pred CCC-----cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GVS-----SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+|. .+|++.++ ++|+.+....|. +.++|.+.|+..
T Consensus 133 gv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l 178 (213)
T 2i81_A 133 NVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI 178 (213)
T ss_dssp TCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred CCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 998 89977666 579888877553 578888888754
No 453
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.15 Score=45.19 Aligned_cols=47 Identities=26% Similarity=0.183 Sum_probs=27.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
...|+++.|.+..+.. ++...|..||......|+++-|..+|.++-.
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3456666666655543 3455666666666666666666666665544
No 454
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=96.36 E-value=0.0036 Score=51.83 Aligned_cols=66 Identities=23% Similarity=0.396 Sum_probs=43.0
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC----cHh----hHHHcCCCcccEEEEEECC
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED----HPY----IAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~----~~~----~~~~~~v~~~Pt~~~~~~g 690 (713)
.+...+.... |++|+. |++|+.+.++|+++. +.+..+|++. .+. +....|+.++|++ |.+|
T Consensus 11 ~~~~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~g 81 (113)
T 3rhb_A 11 SIRKTVTENT--VVIYSKTWCSYCTEVKTLFKRLG-----VQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVCG 81 (113)
T ss_dssp HHHHHHHHSS--EEEEECTTCHHHHHHHHHHHHTT-----CCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EETT
T ss_pred HHHHHHhcCC--EEEEECCCChhHHHHHHHHHHcC-----CCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EECC
Confidence 3444444333 666766 999999999998753 3334455543 233 5555689999986 6799
Q ss_pred eEeee
Q 005125 691 SRVKE 695 (713)
Q Consensus 691 ~~~~~ 695 (713)
+.++.
T Consensus 82 ~~igG 86 (113)
T 3rhb_A 82 KHIGG 86 (113)
T ss_dssp EEEES
T ss_pred EEEcC
Confidence 87653
No 455
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=96.34 E-value=0.0053 Score=55.77 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=58.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-----------cHhhHHH-cCCC--------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-----------HPYIAKS-EGVS-------------- 679 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-----------~~~~~~~-~~v~-------------- 679 (713)
..+++.|++ |++|....|.+.++.++++ ++.++.|.++. ...++.. +++.
T Consensus 39 k~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 118 (180)
T 3kij_A 39 KVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEG 118 (180)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTC
T ss_pred CEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCccc
Confidence 456666888 9999999999999998884 38888887543 1233334 3321
Q ss_pred ------------ccc-----EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 680 ------------SIP-----AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 680 ------------~~P-----t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.+| +|++-++|+.+..+.|. +++.|.+.|++.
T Consensus 119 ~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 168 (180)
T 3kij_A 119 EPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAAL 168 (180)
T ss_dssp CHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHH
T ss_pred cHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 145 57777899999999998 776666666543
No 456
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=96.31 E-value=0.0075 Score=54.44 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=58.1
Q ss_pred CceEEEeec---CchhHHHHHHHHHHHHhCCCcEEEEEeCCC----------------------cHhhHHHcCCCcc---
Q 005125 630 GMAVVLFCS---KAEHKQVLQLMEQVCKRFPSVNFLKVEVED----------------------HPYIAKSEGVSSI--- 681 (713)
Q Consensus 630 ~~~vv~f~~---cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~----------------------~~~~~~~~~v~~~--- 681 (713)
..+++.|++ |++|....|.|.++.++ .++.++.|++|. ...++..|+|...
T Consensus 45 k~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~ 123 (175)
T 1xvq_A 45 KSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGP 123 (175)
T ss_dssp SCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCSST
T ss_pred CEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccccc
Confidence 456777885 99999999999999888 789999998872 2357778888877
Q ss_pred ------cEEEEE-ECCeEeeeecC--C-CHHHHHHHHHh
Q 005125 682 ------PAFKIY-KNGSRVKEIPG--H-QCELLEKSVKL 710 (713)
Q Consensus 682 ------Pt~~~~-~~g~~~~~~~g--~-~~~~~~~~~~~ 710 (713)
|++.++ ++|+.+....| . +.+.+.++|+.
T Consensus 124 ~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~ 162 (175)
T 1xvq_A 124 MAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAA 162 (175)
T ss_dssp TTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHH
T ss_pred cCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHH
Confidence 755544 58999888864 2 33345544443
No 457
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=96.27 E-value=0.013 Score=54.02 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=32.6
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVE 667 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d 667 (713)
..+|+.|+. |+.|+.+.|.++++.+.++ ++.|..++++
T Consensus 26 ~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~ 66 (195)
T 3hd5_A 26 KIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA 66 (195)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred CeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence 456777888 9999999999999999997 5888888885
No 458
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.25 E-value=0.14 Score=52.28 Aligned_cols=125 Identities=15% Similarity=0.021 Sum_probs=86.4
Q ss_pred HHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH
Q 005125 407 ALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID---PNNKEV 483 (713)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 483 (713)
..+|..|+..|+|.+|...+.+.........+ .....+++.....+|...+++.++...|.+|.... +.++..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd----~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDD----KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC----THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc----chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 46899999999999999998887653221100 01235677888899999999999999999987653 233433
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCCC-----CHHHHHHHHHHHHHcCCH
Q 005125 484 IKGVKMAKAMASARLRGNLLF-KASKYKEACYAYSEGLEHEAY-----NSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~ 543 (713)
...+ ...-|..+. ..++|.+|..+|-++++-... ...+...++.|-...++.
T Consensus 179 ~a~i--------~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 179 QGAL--------DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHH--------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHH--------HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 3221 125788888 899999999999998754321 123445566666666663
No 459
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=96.22 E-value=0.011 Score=54.97 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=31.3
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE 667 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d 667 (713)
..+++.||+ |++|+...|.|.++.+++. ++.++.|+++
T Consensus 48 k~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d 89 (208)
T 2f8a_A 48 KVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN 89 (208)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence 456667888 9999999999999998873 4888888875
No 460
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.16 E-value=0.092 Score=60.11 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=87.1
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHc
Q 005125 269 AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR--------IDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~ 340 (713)
....|++++|.++.+ ..++...|..+|..+...++++.|+.+|.++-. ....+.+.+..++......
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345666666666543 335688999999999999999999999998621 2244556666777777777
Q ss_pred CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHccC
Q 005125 341 GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS--APQVYALQAEALLRLQR 418 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~la~~~~~~g~ 418 (713)
|++..|..+|.+.-. .-.....+...++|++|+...++ ..|.. .+.+....+..+...|+
T Consensus 737 ~~~~~A~~~~~~~g~---------------~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~ 798 (814)
T 3mkq_A 737 GKFNLAFNAYWIAGD---------------IQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGK 798 (814)
T ss_dssp TCHHHHHHHHHHHTC---------------HHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CchHHHHHHHHHcCC---------------HHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccc
Confidence 777777766655322 12233456667788877766553 55665 55666666777777776
Q ss_pred HH
Q 005125 419 HQ 420 (713)
Q Consensus 419 ~~ 420 (713)
.+
T Consensus 799 ~~ 800 (814)
T 3mkq_A 799 NT 800 (814)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 461
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=96.13 E-value=0.021 Score=50.85 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=62.5
Q ss_pred CCceEEEeec---CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-----------------------cHhhHHHcCCCc--
Q 005125 629 PGMAVVLFCS---KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-----------------------HPYIAKSEGVSS-- 680 (713)
Q Consensus 629 ~~~~vv~f~~---cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-----------------------~~~~~~~~~v~~-- 680 (713)
...+++.|++ |++|....|.+.++.++++++.++.|+.|. ...++..++|..
T Consensus 44 gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~ 123 (167)
T 2jsy_A 44 GKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKE 123 (167)
T ss_dssp TSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTT
T ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcccc
Confidence 3456777776 999999999999999887778999998874 124666788876
Q ss_pred ----ccEEEEE-ECCeEeeeecCC------CHHHHHHHHHhh
Q 005125 681 ----IPAFKIY-KNGSRVKEIPGH------QCELLEKSVKLY 711 (713)
Q Consensus 681 ----~Pt~~~~-~~g~~~~~~~g~------~~~~~~~~~~~~ 711 (713)
.|++.++ ++|+.+....|. +.++|.+.|++.
T Consensus 124 ~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l 165 (167)
T 2jsy_A 124 LRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL 165 (167)
T ss_dssp TCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred CCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence 3876666 579988887653 347888888765
No 462
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=96.05 E-value=0.011 Score=53.93 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=58.3
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-----------cHhhHHHc------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-----------HPYIAKSE------------------ 676 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-----------~~~~~~~~------------------ 676 (713)
..+++.|++ |++|....|.+.++.+++. ++.++.|++|. ...++..+
T Consensus 50 k~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~ 129 (185)
T 2gs3_A 50 FVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAH 129 (185)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTTBC
T ss_pred CEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChhhh
Confidence 456666888 9999999999999998874 48888887652 11122222
Q ss_pred -------------CCC-----cccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 677 -------------GVS-----SIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 677 -------------~v~-----~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++. .+|+..++ ++|+.+..+.|. ++++|.+.|++.
T Consensus 130 ~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 184 (185)
T 2gs3_A 130 PLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 184 (185)
T ss_dssp HHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred HHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence 222 24655555 689999999998 888888888764
No 463
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.92 E-value=0.089 Score=54.14 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSK----------------------ATYRSNKSAALIGLGRQIEALVECKEA 319 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~a 319 (713)
+...|......|+.++|+..+.+|+.+.... ..+...++..+...|++.+|+..+.++
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555666789999999999999874211 123456677888999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+..+|-+..+|..+-.+|...|+..+|+..|+++..
T Consensus 198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998766
No 464
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=95.89 E-value=0.015 Score=45.83 Aligned_cols=56 Identities=13% Similarity=0.329 Sum_probs=40.9
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHh----hHHHcCCCcccEEEEEECCeEee
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY----IAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.+++|+. |+.|+.+.+++++. ++.|..+|++..+. +...+++.++|++ |.+|+.+.
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i~ 68 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHVG 68 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 4666666 99999999988764 35677788876654 4447789999964 56887654
No 465
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=95.88 E-value=0.026 Score=53.12 Aligned_cols=81 Identities=12% Similarity=0.146 Sum_probs=62.0
Q ss_pred CceEEEeec---CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCc----------------------------HhhHHHc
Q 005125 630 GMAVVLFCS---KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDH----------------------------PYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~~---cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~----------------------------~~~~~~~ 676 (713)
..+++.|++ |++|....|.|.++.+++ .++.++.|.+|.. ..++..|
T Consensus 70 k~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~y 149 (222)
T 3ztl_A 70 KYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAY 149 (222)
T ss_dssp SEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHT
T ss_pred CeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHHHc
Confidence 456777885 999999999999999887 4588888888742 2466778
Q ss_pred CCC------cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHh
Q 005125 677 GVS------SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKL 710 (713)
Q Consensus 677 ~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~ 710 (713)
+|. .+|+++++ ++|+.+....|. ..++|.+.|+.
T Consensus 150 gv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~ 195 (222)
T 3ztl_A 150 GVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA 195 (222)
T ss_dssp TCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred CCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 888 89988777 579888877665 45667666654
No 466
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.033 Score=61.75 Aligned_cols=60 Identities=17% Similarity=0.038 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 294 TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353 (713)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 353 (713)
..+...+..+...|+++-|+.+.++|+...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 355566777778889999999999999999998999999999999999999988776655
No 467
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=95.74 E-value=0.033 Score=50.10 Aligned_cols=37 Identities=8% Similarity=0.045 Sum_probs=27.7
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhC--C-CcEEEEEeC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRF--P-SVNFLKVEV 666 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~--p-~~~~~~v~~ 666 (713)
...|+.|+. |+.|..+.+.+.++.+++ + ++.++..+.
T Consensus 28 ~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~ 69 (175)
T 1z6m_A 28 PVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF 69 (175)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence 345666777 999999999988888776 3 566666554
No 468
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=95.56 E-value=0.15 Score=44.10 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=64.4
Q ss_pred HHHHHhhcCCceEEE-eec--CchhHHHHHHHHHHHHhC-CCcEEEEEeC--CCcHhhHHHcCCCc--ccEEEEEEC-Ce
Q 005125 621 RFRHFVTSPGMAVVL-FCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEV--EDHPYIAKSEGVSS--IPAFKIYKN-GS 691 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~-f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~--d~~~~~~~~~~v~~--~Pt~~~~~~-g~ 691 (713)
.+.......-...++ |.. -.....+.+.|.++++.+ +.+.|+.||. +....+...+|+.. +|++.++.. +.
T Consensus 23 n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v~i~~~~~~ 102 (147)
T 3bj5_A 23 TAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEE 102 (147)
T ss_dssp THHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTCCGGGCSEEEEEECSSS
T ss_pred cHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCCCcccCCEEEEEecccc
Confidence 344444333333333 443 234667889999999998 5699999999 67777889999986 999998875 22
Q ss_pred -Eeeeec-CC-CHHHHHHHHHhhh
Q 005125 692 -RVKEIP-GH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 -~~~~~~-g~-~~~~~~~~~~~~~ 712 (713)
..-... +. +++.|.+|++.+.
T Consensus 103 ~~Ky~~~~~~~t~~~i~~Fv~d~l 126 (147)
T 3bj5_A 103 MTKYKPESEELTAERITEFCHRFL 126 (147)
T ss_dssp CEEECCSCCCCCHHHHHHHHHHHH
T ss_pred cccCCCCcccCCHHHHHHHHHHHH
Confidence 222333 45 8999999999874
No 469
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=95.48 E-value=0.058 Score=47.53 Aligned_cols=67 Identities=7% Similarity=0.078 Sum_probs=51.1
Q ss_pred ceEEEee-c--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC---------------------cHhhHHHcCCCccc--
Q 005125 631 MAVVLFC-S--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED---------------------HPYIAKSEGVSSIP-- 682 (713)
Q Consensus 631 ~~vv~f~-~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~---------------------~~~~~~~~~v~~~P-- 682 (713)
.+++.|+ + |+.|....|.|.++.+++. + .++-|..|. ...++..|+|...|
T Consensus 37 ~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~ 115 (159)
T 2a4v_A 37 VVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS 115 (159)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred eEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccC
Confidence 3556665 4 9999999999999887763 3 666676653 22466778888888
Q ss_pred -----EEEEEECCeEeeeecCC
Q 005125 683 -----AFKIYKNGSRVKEIPGH 699 (713)
Q Consensus 683 -----t~~~~~~g~~~~~~~g~ 699 (713)
+|++ ++|..+....|.
T Consensus 116 g~~~~~~li-~~G~i~~~~~g~ 136 (159)
T 2a4v_A 116 GSIRSHFIF-VDGKLKFKRVKI 136 (159)
T ss_dssp CBCCEEEEE-ETTEEEEEEESC
T ss_pred CccceEEEE-cCCEEEEEEccC
Confidence 7888 999999999887
No 470
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=95.46 E-value=0.011 Score=50.17 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=45.1
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHH-HHHHHHHHHhCCCcEEEEEeCCCc-------HhhHHHcCCCcccEEEEEEC
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQV-LQLMEQVCKRFPSVNFLKVEVEDH-------PYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~-~~~~~~l~~~~p~~~~~~v~~d~~-------~~~~~~~~v~~~Pt~~~~~~ 689 (713)
..+...+... .|++|+. |+.|..+ .++|+++... .+.+..+|++.. ..+....|+.++|++ |.+
T Consensus 28 ~~v~~~i~~~--~Vvvy~~~~Cp~C~~a~k~~L~~~~~~--~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--fi~ 101 (129)
T 3ctg_A 28 AHVKDLIGQK--EVFVAAKTYCPYCKATLSTLFQELNVP--KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--YIN 101 (129)
T ss_dssp HHHHHHHHHS--SEEEEECTTCHHHHHHHHHHHTTSCCC--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred HHHHHHHcCC--CEEEEECCCCCchHHHHHHHHHhcCcc--CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--EEC
Confidence 3455555433 3666666 9999999 8888765421 144445555433 357778899999984 788
Q ss_pred CeEee
Q 005125 690 GSRVK 694 (713)
Q Consensus 690 g~~~~ 694 (713)
|+.++
T Consensus 102 g~~ig 106 (129)
T 3ctg_A 102 GKHIG 106 (129)
T ss_dssp TEEEE
T ss_pred CEEEc
Confidence 88764
No 471
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.21 Score=44.18 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=68.8
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHH
Q 005125 374 KCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVR 453 (713)
Q Consensus 374 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l 453 (713)
+.....+.|+++.|.+..+.. + ....|..+|...+..|+++-|+.+|.++-.. -.+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l-----~-~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------------------~~L 66 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL-----N-DSITWERLIQEALAQGNASLAEMIYQTQHSF------------------DKL 66 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----C-CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------------------HHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh-----C-CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH------------------HHH
Confidence 345566788999888887654 2 2478888999999999999999999887432 224
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 454 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
..+|...|+.+.-...-+.+.... ++. ....+++.+|+++++++.|.+
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~~g-~~n----------------~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQTRE-DFG----------------SMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTT-CHH----------------HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHCc-cHH----------------HHHHHHHHcCCHHHHHHHHHH
Confidence 566667777766554444443322 211 133456677888888777654
No 472
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=95.34 E-value=0.029 Score=50.26 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=58.8
Q ss_pred CceEEEeec--Cc-hhHHHHHHHHHHHHhCC----CcEEEEEeCCC---cH-------------------------hhHH
Q 005125 630 GMAVVLFCS--KA-EHKQVLQLMEQVCKRFP----SVNFLKVEVED---HP-------------------------YIAK 674 (713)
Q Consensus 630 ~~~vv~f~~--cg-~c~~~~~~~~~l~~~~p----~~~~~~v~~d~---~~-------------------------~~~~ 674 (713)
..+++.|++ |+ +|....+.+.++.+.++ ++.++.|++|. .+ .+..
T Consensus 34 k~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 113 (174)
T 1xzo_A 34 EVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIE 113 (174)
T ss_dssp CCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHHH
T ss_pred CEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHHHH
Confidence 456777888 99 99999999998887662 38888888762 11 1111
Q ss_pred H----------------cCCCcccEEEEE-ECCeEeeeecCC---CHHHHHHHHHhhh
Q 005125 675 S----------------EGVSSIPAFKIY-KNGSRVKEIPGH---QCELLEKSVKLYS 712 (713)
Q Consensus 675 ~----------------~~v~~~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~ 712 (713)
. +++..+|++.++ ++|+.+..+.|. +.++|.+.|++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll 171 (174)
T 1xzo_A 114 EFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAS 171 (174)
T ss_dssp HHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred HHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 1 235667865444 689999999987 3789999988753
No 473
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=95.25 E-value=0.07 Score=47.16 Aligned_cols=82 Identities=11% Similarity=0.085 Sum_probs=59.2
Q ss_pred CceEEEeec---CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCc---------------------HhhHHHcCCCc---
Q 005125 630 GMAVVLFCS---KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDH---------------------PYIAKSEGVSS--- 680 (713)
Q Consensus 630 ~~~vv~f~~---cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~---------------------~~~~~~~~v~~--- 680 (713)
..+++.|+. |+.|....|.+.++.+++ .++.++-|..|.. ..++..+++..
T Consensus 36 k~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~ 115 (163)
T 3gkn_A 36 HWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKN 115 (163)
T ss_dssp SCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEEE
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccccc
Confidence 356677775 999999999999998776 3588888887732 24566677776
Q ss_pred ---------ccEEEEE-ECCeEeeeecCC----CHHHHHHHHHhh
Q 005125 681 ---------IPAFKIY-KNGSRVKEIPGH----QCELLEKSVKLY 711 (713)
Q Consensus 681 ---------~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~~~~ 711 (713)
+|++.++ ++|..+....|. ..++|.+.|++.
T Consensus 116 ~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l 160 (163)
T 3gkn_A 116 MYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH 160 (163)
T ss_dssp ETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred cccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence 8988777 478888777665 346666666654
No 474
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=95.20 E-value=0.037 Score=43.06 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=45.3
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc----HhhHHHcCC-----CcccEEEEEECCeEeeeecCC
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH----PYIAKSEGV-----SSIPAFKIYKNGSRVKEIPGH 699 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~----~~~~~~~~v-----~~~Pt~~~~~~g~~~~~~~g~ 699 (713)
..+++|+. |+.|+.+.+++.+... ...+..+|.+.. +++....|. .++|++ |.+|+.+. |.
T Consensus 4 m~v~ly~~~~Cp~C~~~~~~L~~~~i---~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i--~i~g~~i~---g~ 75 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAKQWFEENNI---AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQI--FIDDEHIG---GF 75 (89)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEE--EETTEEEE---SH
T ss_pred eEEEEEEcCCChhHHHHHHHHHHcCC---CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEE--EECCEEEe---Ch
Confidence 45677776 9999999998876532 245555555544 356666777 899987 45887654 44
Q ss_pred CHHHHHHHHH
Q 005125 700 QCELLEKSVK 709 (713)
Q Consensus 700 ~~~~~~~~~~ 709 (713)
+.|.++++
T Consensus 76 --~~i~~~~~ 83 (89)
T 3msz_A 76 --TELKANAD 83 (89)
T ss_dssp --HHHHHTHH
T ss_pred --HHHHHHHH
Confidence 44555444
No 475
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=95.19 E-value=0.094 Score=49.41 Aligned_cols=99 Identities=9% Similarity=0.209 Sum_probs=74.5
Q ss_pred cccccceeecchhHHHHHhhcCCceEEEeecCchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 608 KFGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 608 ~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+....+.+.+++..++......++-|++ ..|....+.|.+++..++++.|..+. .+.++..++|.. |++.+|
T Consensus 6 ~~~~~~~~l~s~~~~~~~l~~~~v~vVgff~-~~~~~~~~~f~~~A~~l~~~~F~~t~---~~~v~~~~~v~~-p~i~lf 80 (227)
T 4f9z_D 6 GAAQEPTWLTDVPAAMEFIAATEVAVIGFFQ-DLEIPAVPILHSMVQKFPGVSFGIST---DSEVLTHYNITG-NTICLF 80 (227)
T ss_dssp ---CCCEECCSHHHHHHHHHTSSEEEEEECS-CSCSTHHHHHHHHTTTCTTSEEEEEC---CHHHHHHTTCCS-SEEEEE
T ss_pred CCcCCCeeeCCHHHHHHHHhcCCeEEEEEec-CCCchhHHHHHHHHHhCCCceEEEEC---CHHHHHHcCCCC-CeEEEE
Confidence 3455677778888898888777766766766 24778889999999888788888764 578889999987 999999
Q ss_pred ECCe-EeeeecC----C-CHHHHHHHHHhh
Q 005125 688 KNGS-RVKEIPG----H-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~-~~~~~~g----~-~~~~~~~~~~~~ 711 (713)
+.+. ....+.| . +.+.|.+||...
T Consensus 81 k~~~~~~~~~~~~~~g~~~~~~l~~fi~~~ 110 (227)
T 4f9z_D 81 RLVDNEQLNLEDEDIESIDATKLSRFIEIN 110 (227)
T ss_dssp ETTTTEEEEECHHHHHTCCHHHHHHHHHHH
T ss_pred EecCcccccccccccCCCCHHHHHHHHHHh
Confidence 9742 3334553 4 999999999875
No 476
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.13 E-value=0.42 Score=49.03 Aligned_cols=126 Identities=12% Similarity=0.025 Sum_probs=93.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHH--HHHH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Q 005125 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNK------EVIKG--VKMA--KAMASARLRGNLLFKASKYKEACYAYSEGLEH 522 (713)
Q Consensus 453 lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~--~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 522 (713)
.|......|+.+.|...+++|+.+..... ..|.. -..+ ....++..++..+...|++.+|+..+..++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34445567899999999999998743221 11111 1111 12445557888899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHHHhCCCCHH
Q 005125 523 EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV-------MPSYSKARLEAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 523 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~~A~~~~~~al~~~p~~~~ 584 (713)
+|-+-.+|..+-.+|...|+..+|+..|+++.+. +|.. +-.+.|+.++.-+|....
T Consensus 201 ~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~------~l~~l~~~il~~~~~~~~ 263 (388)
T 2ff4_A 201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP------TLRALNERILRQQPLDAK 263 (388)
T ss_dssp STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH------HHHHHHHHHHTTCCCCHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999999999887542 4542 344566777777776654
No 477
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.14 Score=56.90 Aligned_cols=122 Identities=11% Similarity=0.060 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHH--Hc-cCHHHHHHHhhccccC--------ChhhHHhhhcccCcHHHHHH
Q 005125 384 WNDLLKETQNVISFGADSAPQVYALQAEALL--RL-QRHQEAHDSYNKSPKF--------CLEYYTKLFGLAGGAYLLIV 452 (713)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~--~~-g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~ 452 (713)
++.|+..+++....+|... +++..+.+.. .. .+--+|+..+.++++. .+.+.....-......++..
T Consensus 265 ~~~a~~~le~L~~~~p~~~--~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHD--IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 5778889999888888763 3332222222 22 2345677777666532 11110000000112446777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005125 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEG 519 (713)
Q Consensus 453 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 519 (713)
.+..+...|+++-|+++.++|+...|..-..|. .|+.+|..+|+|+.|+-.+..+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~------------~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWY------------NLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHH------------HHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHH------------HHHHHHHHhccHHHHHHHHhcC
Confidence 788888999999999999999999999999998 6999999999999999888765
No 478
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=1.3 Score=46.29 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ---IDPNN 480 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~ 480 (713)
.+...++.+|...|++.+|...+.....-.-... ......+++.....+|...+++.+|...+.++.. ..+.+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~----~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSM----EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence 5667789999999999999999988642100000 0012356788889999999999999999998743 24444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Q 005125 481 KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522 (713)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 522 (713)
+.... ..+...|.++...++|.+|..+|..++..
T Consensus 214 ~~lk~--------~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 214 ESLKL--------EYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 44332 12236899999999999999999988754
No 479
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=95.09 E-value=0.12 Score=47.16 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=28.6
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeC
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEV 666 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~ 666 (713)
..|+.|+. |+.|..+.+.+.++.+.++ .+.|..+++
T Consensus 27 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 65 (193)
T 2rem_A 27 IEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA 65 (193)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred eEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence 35666777 9999999999999998886 467766655
No 480
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.92 E-value=0.13 Score=54.39 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
.+..+|+.......+..|..+|.+|+.+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5667888888888888888888888888888888888888888888888888888888888776678888888776654
No 481
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=94.82 E-value=0.08 Score=48.47 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=29.2
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEV 666 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~ 666 (713)
...|+.|+. |+.|..+.|.+.++.++++ .+.|..+++
T Consensus 23 ~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 62 (195)
T 2znm_A 23 KIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV 62 (195)
T ss_dssp SEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred CcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence 445666777 9999999999999998886 466666664
No 482
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=94.59 E-value=0.074 Score=50.64 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=58.9
Q ss_pred Eeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCc---------------------------HhhHHHcCCC----
Q 005125 635 LFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDH---------------------------PYIAKSEGVS---- 679 (713)
Q Consensus 635 ~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~---------------------------~~~~~~~~v~---- 679 (713)
.|++ |+.|....+.|.++.+++. ++.++.|.+|.. ..++..|||.
T Consensus 40 ~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~ 119 (249)
T 3a2v_A 40 SHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAES 119 (249)
T ss_dssp CCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTC
T ss_pred EEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccC
Confidence 3566 9999999999999887773 688888888752 2467778887
Q ss_pred ---cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 680 ---SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 680 ---~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
++|++.++ .+|..+..+.|. +.++|.+.|+..
T Consensus 120 g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al 160 (249)
T 3a2v_A 120 ATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 160 (249)
T ss_dssp SSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence 89976666 478887776543 689999888764
No 483
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=94.57 E-value=0.062 Score=44.24 Aligned_cols=66 Identities=15% Similarity=0.286 Sum_probs=43.5
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-------HhhHHHcCCCcccEEEEEECC
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-------PYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-------~~~~~~~~v~~~Pt~~~~~~g 690 (713)
..+...+.. ..+++|+. |+.|+.+.++|.++. +.+..+|++.. ..+....|..++|++ |.+|
T Consensus 8 ~~~~~~i~~--~~v~vy~~~~Cp~C~~ak~~L~~~~-----i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~v--fi~g 78 (114)
T 3h8q_A 8 RHLVGLIER--SRVVIFSKSYCPHSTRVKELFSSLG-----VECNVLELDQVDDGARVQEVLSEITNQKTVPNI--FVNK 78 (114)
T ss_dssp HHHHHHHHH--CSEEEEECTTCHHHHHHHHHHHHTT-----CCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEE--EETT
T ss_pred HHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHcC-----CCcEEEEecCCCChHHHHHHHHHHhCCCccCEE--EECC
Confidence 345555533 34555666 999999999998752 34555666532 235566788999976 5588
Q ss_pred eEee
Q 005125 691 SRVK 694 (713)
Q Consensus 691 ~~~~ 694 (713)
+.++
T Consensus 79 ~~ig 82 (114)
T 3h8q_A 79 VHVG 82 (114)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7665
No 484
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.50 E-value=0.26 Score=46.58 Aligned_cols=61 Identities=25% Similarity=0.220 Sum_probs=50.0
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005125 268 EAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR 328 (713)
Q Consensus 268 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 328 (713)
.+++.|++++|+......++.+|.++.....+...+.-.|+|+.|.+.++.+.+++|....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4567788888888888888888888888888888888888888888888888888887643
No 485
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=94.48 E-value=0.076 Score=43.28 Aligned_cols=66 Identities=12% Similarity=0.289 Sum_probs=45.8
Q ss_pred HHHHHhhcCCceEEEee-----c-CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhh----HHHcCCCcccEEEEEECC
Q 005125 621 RFRHFVTSPGMAVVLFC-----S-KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYI----AKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~-----~-cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~----~~~~~v~~~Pt~~~~~~g 690 (713)
.+...+.. ..++++.. . |+.|+.+.++|... ++.|..+|++..+.+ ....|..++|. +|.+|
T Consensus 7 ~~~~~i~~-~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~--ifi~g 78 (109)
T 1wik_A 7 GLKVLTNK-ASVMLFMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQ--LYVRG 78 (109)
T ss_dssp CHHHHHTT-SSEEEEESSTTTCCCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCE--EECSS
T ss_pred HHHHHhcc-CCEEEEEecCCCCCCCchHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHhCCCCCCE--EEECC
Confidence 34455543 34455555 4 99999999998764 467888999887654 44557889996 57888
Q ss_pred eEee
Q 005125 691 SRVK 694 (713)
Q Consensus 691 ~~~~ 694 (713)
+.++
T Consensus 79 ~~ig 82 (109)
T 1wik_A 79 DLVG 82 (109)
T ss_dssp SEEE
T ss_pred EEEc
Confidence 7654
No 486
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.22 E-value=1 Score=42.62 Aligned_cols=60 Identities=20% Similarity=0.131 Sum_probs=54.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 302 ALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 302 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
.+++.|+.++|+..+...++.+|.+......|..+++-.|+++.|...++.+.+ ++|...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~-l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK-LFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCchhh
Confidence 456778999999999999999999999999999999999999999999999999 998874
No 487
>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19
Probab=94.08 E-value=0.29 Score=46.66 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=54.9
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc------------------HhhHHHcCCCcc--cEEEEEE
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH------------------PYIAKSEGVSSI--PAFKIYK 688 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~------------------~~~~~~~~v~~~--Pt~~~~~ 688 (713)
..|.+|+. |+.|..+..++.++...+ ++..+..++++. +.++..+|.+++ |. +|.
T Consensus 44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~~-~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPq--I~I 120 (270)
T 2axo_A 44 GVVELFTSQGCASCPPADEALRKMIQKG-DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQ--AIL 120 (270)
T ss_dssp CEEEEEECTTCTTCHHHHHHHHHHHHHT-SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSE--EEE
T ss_pred cEEEEEeCCCCCChHHHHHHHHHhhccC-CeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCE--EEE
Confidence 56777888 999999999999998775 454333333322 246778899999 97 455
Q ss_pred CCeEeeeecCCCHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+|+. .+.|++++.|.+.|.+.
T Consensus 121 ng~~--~v~G~d~~~l~~~l~~~ 141 (270)
T 2axo_A 121 NGRD--HVKGADVRGIYDRLDAF 141 (270)
T ss_dssp TTTE--EEETTCHHHHHHHHHHH
T ss_pred CCEE--eecCCCHHHHHHHHHHh
Confidence 7764 36788889999888653
No 488
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=93.97 E-value=0.061 Score=48.67 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=28.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEe
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVE 665 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~ 665 (713)
..+|+.|.. |+.|..+.+.+.++.+++++ +.+..+.
T Consensus 22 ~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~ 60 (184)
T 4dvc_A 22 SPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNH 60 (184)
T ss_dssp SCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred CCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEe
Confidence 456777777 99999999999999999864 5554443
No 489
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.94 E-value=0.32 Score=51.30 Aligned_cols=80 Identities=15% Similarity=0.049 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
.+..+|.+......++.|..+|.+|+.+.|++...++ .+|.+....|+.-+|+-+|.+++....-.+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~n------------qLavla~~~~~~l~a~y~y~rsl~~~~Pf~~ 221 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYN------------QLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHH------------HHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHH------------HHHHHHhcccccHHHHHHHHHHHhcCCCChh
Confidence 6677899999999999999999999999999999998 6999999999999999999999988777899
Q ss_pred HHHHHHHHHHHc
Q 005125 529 LLCNRAACRSKL 540 (713)
Q Consensus 529 ~~~~la~~~~~~ 540 (713)
+..|+...+.+.
T Consensus 222 a~~nL~~~f~~~ 233 (497)
T 1ya0_A 222 ASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888653
No 490
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.67 E-value=7.7 Score=40.33 Aligned_cols=169 Identities=8% Similarity=-0.023 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HH-HcCCHHHHHHHHHHHHHh----CCC-----
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAA---LI-GLGRQIEALVECKEAIRI----DPC----- 325 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---~~-~~g~~~~A~~~~~~al~~----~p~----- 325 (713)
..++..+...++..++|+...+++.-..........+...+... +. .....+. ......+.. ..+
T Consensus 56 ~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE 133 (445)
T 4b4t_P 56 KEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVE 133 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHH
Confidence 44577778888899999888777765544433333222222211 11 1121111 111222221 111
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH---cCCC
Q 005125 326 --YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVIS---FGAD 400 (713)
Q Consensus 326 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~ 400 (713)
.......|+.+|...|++.+|...+.......... ......+..++.....+...++|.+|...+.++.. ..+.
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 24556788999999999999999888876422111 11223344455555566666666666665555421 1111
Q ss_pred C---hHHHHHHHHHHHHHccCHHHHHHHhhccc
Q 005125 401 S---APQVYALQAEALLRLQRHQEAHDSYNKSP 430 (713)
Q Consensus 401 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~al 430 (713)
. ....+...|.++...++|.+|-.+|..++
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1 11334444555555555555555555443
No 491
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.42 Score=49.78 Aligned_cols=96 Identities=8% Similarity=-0.043 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSS---KATYRSNKSAALIGLGRQIEALVECKEAIRIDP--CY----HRAH 330 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~ 330 (713)
.++..+|..|+..|++++|+++|.++...... ..+.+.....++...++|..+..++.++..+.. .+ ....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35789999999999999999999999876432 367888899999999999999999999876521 12 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
...|.++...++|.+|..+|..+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 5667788889999999999988876
No 492
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.33 E-value=2.3 Score=48.40 Aligned_cols=97 Identities=7% Similarity=-0.091 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQ-----IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
...+..+-..|.+.|+.++|...|.+..+ ..|+ ...|+ .+-..|.+.|++++|.+.|++..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYN------------tLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYN------------AVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHH------------HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHH------------HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34678888999999999999999977543 2343 44555 588899999999999999999886
Q ss_pred c--CCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Q 005125 522 H--EAYNSVLLCNRAACRSKLGQY-EKAVEDCTAALIVM 557 (713)
Q Consensus 522 ~--~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~ 557 (713)
. .| +...|..+-.++.+.|+. ++|.+.+++..+..
T Consensus 194 ~G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 194 AGLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp TTCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 5 45 788899899999999985 78999999998864
No 493
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.13 Score=43.14 Aligned_cols=71 Identities=17% Similarity=0.378 Sum_probs=44.3
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-H----hhHHHcCCCcccEEEEEECCeE
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-P----YIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-~----~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
.+|..++... .|++|.. |+.|..+..+|.+.....+....+.||.+.. + .+....|..++|.+ |.+|+.
T Consensus 5 ~~~~~ii~~~--~Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~I--fI~G~~ 80 (127)
T 3l4n_A 5 KEYSLILDLS--PIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNL--LVNGVS 80 (127)
T ss_dssp HHHHHHHTSC--SEEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEE
T ss_pred HHHHHHHccC--CEEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceE--EECCEE
Confidence 4566665443 3666666 9999999999987421123455556665432 2 23344588899975 678876
Q ss_pred ee
Q 005125 693 VK 694 (713)
Q Consensus 693 ~~ 694 (713)
|+
T Consensus 81 IG 82 (127)
T 3l4n_A 81 RG 82 (127)
T ss_dssp CC
T ss_pred Ec
Confidence 53
No 494
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=93.09 E-value=0.24 Score=46.23 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=59.4
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCcH----------------------------hhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDHP----------------------------YIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~~----------------------------~~~~~~ 676 (713)
..+++.|+ + |+.|....|.|.++.+++ .++.++-|.+|... .++..|
T Consensus 57 k~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~y 136 (221)
T 2c0d_A 57 KYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNY 136 (221)
T ss_dssp CEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHT
T ss_pred CeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHHc
Confidence 45677788 6 999999999999988776 46888888776421 244556
Q ss_pred CC-----CcccEEEEEE-CCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GV-----SSIPAFKIYK-NGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v-----~~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+| ..+|+++++. +|..+....|. +.++|.+.|+..
T Consensus 137 gv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L 182 (221)
T 2c0d_A 137 NVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI 182 (221)
T ss_dssp TCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred CCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 77 3679887774 68888776552 678888888754
No 495
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=93.05 E-value=0.34 Score=43.05 Aligned_cols=84 Identities=5% Similarity=-0.067 Sum_probs=57.4
Q ss_pred CCceEEEeec--Cc-hhHHHHHHHHHHHHhC----CCcEEEEEeCCC--c-----------------------------H
Q 005125 629 PGMAVVLFCS--KA-EHKQVLQLMEQVCKRF----PSVNFLKVEVED--H-----------------------------P 670 (713)
Q Consensus 629 ~~~~vv~f~~--cg-~c~~~~~~~~~l~~~~----p~~~~~~v~~d~--~-----------------------------~ 670 (713)
...+++.|+. |+ .|....+.+.++.+++ .++.++.|.+|. . .
T Consensus 28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~ 107 (170)
T 3me7_A 28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF 107 (170)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence 3456666777 96 6999999999988776 347777776651 1 1
Q ss_pred hhHHHcCC---------CcccEEEEE-ECCeEeeeecCC--CHHHHHHHHHhhh
Q 005125 671 YIAKSEGV---------SSIPAFKIY-KNGSRVKEIPGH--QCELLEKSVKLYS 712 (713)
Q Consensus 671 ~~~~~~~v---------~~~Pt~~~~-~~g~~~~~~~g~--~~~~~~~~~~~~~ 712 (713)
.++..+|+ ...|++.++ ++|..+..+.|. ++++|.+.|++..
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~ 161 (170)
T 3me7_A 108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLAR 161 (170)
T ss_dssp HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHT
T ss_pred HHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence 23333332 334655555 478888888887 8999999998763
No 496
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=93.02 E-value=0.48 Score=47.87 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=71.4
Q ss_pred cccceeecchhHHHHHhh-cCCceEEEeecCchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 610 GSNLVFVSSNERFRHFVT-SPGMAVVLFCSKAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 610 g~~i~~~~~~~~~~~~l~-~~~~~vv~f~~cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+..+.+.+.+..++. .....++.|+.- .|....+.|.+++..+ +.+.|+.+. .+.++..++|. .|++.+|
T Consensus 122 ~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~-~~~~~~~~~~~~A~~~~~~~~f~~~~---~~~~~~~~~v~-~p~i~~~ 196 (350)
T 1sji_A 122 EDPVEIINSKLEVQAFERIEDQIKLIGFFKS-EESEYYKAFEEAAEHFQPYIKFFATF---DKGVAKKLSLK-MNEVDFY 196 (350)
T ss_dssp SCSEEECCSHHHHHHHHHCCSSCEEEEECSC-TTSHHHHHHHHHHHHTTTTSEEEEEC---CHHHHHHHTCC-TTCEEEE
T ss_pred CCcceeccchHHHHHHhccCCCcEEEEEECC-CCcHHHHHHHHHHHhhccCcEEEEEC---CHHHHHHcCCC-CCcEEEE
Confidence 345566666677887776 556666667662 2445567888888887 778898874 46789999999 9999999
Q ss_pred ECC-eEeeeecCC--CHHHHHHHHHhh
Q 005125 688 KNG-SRVKEIPGH--QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g-~~~~~~~g~--~~~~~~~~~~~~ 711 (713)
+.+ +....+.|. +.+.|.+||...
T Consensus 197 ~~~~~~~~~y~g~~~~~~~l~~fi~~~ 223 (350)
T 1sji_A 197 EPFMDEPIAIPDKPYTEEELVEFVKEH 223 (350)
T ss_dssp CTTCSSCEECSSSSCCHHHHHHHHHHH
T ss_pred eCCCCCceecCCCCCCHHHHHHHHHHc
Confidence 863 333457774 899999999875
No 497
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}
Probab=92.90 E-value=0.67 Score=44.24 Aligned_cols=98 Identities=8% Similarity=0.159 Sum_probs=71.5
Q ss_pred ccccceeecchhHHHHHhhcCCceEEEeecCchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 609 FGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 609 ~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
.|..+..+.+.+.+..++......++.|+.- .|......|.+++..+ +++.|+.+. .+.++..+++.. |++++|
T Consensus 4 ~gP~v~~l~s~~~~~~~l~~~~v~vvgff~~-~~~~~~~~f~~~A~~lr~~~~F~~~~---~~~v~~~~~~~~-p~i~~f 78 (252)
T 2h8l_A 4 GSPASVPLRTEEEFKKFISDKDASIVGFFDD-SFSEAHSEFLKAASNLRDNYRFAHTN---VESLVNEYDDNG-EGIILF 78 (252)
T ss_dssp --CCEEECCSHHHHHHHHTSSSCEEEEEESC-TTSHHHHHHHHHHHHTTTTSCEEEEC---CHHHHHHHCSSS-EEEEEE
T ss_pred CCCCceeecCHHHHHHHhhcCCeEEEEEECC-CCChHHHHHHHHHHhcccCcEEEEEC---hHHHHHHhCCCC-CcEEEE
Confidence 3566777877788888887766666666662 3555667788888887 788888884 367889999996 999999
Q ss_pred ECC-------eEeeee-cCC-CHHHHHHHHHhh
Q 005125 688 KNG-------SRVKEI-PGH-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g-------~~~~~~-~g~-~~~~~~~~~~~~ 711 (713)
+.+ +....+ .|. +.+.|.+||...
T Consensus 79 k~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~ 111 (252)
T 2h8l_A 79 RPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQEN 111 (252)
T ss_dssp CCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHH
T ss_pred cchhhcccccccccccCCCCcCHHHHHHHHHhc
Confidence 842 222345 676 999999999875
No 498
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.52 E-value=0.11 Score=54.27 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
.....+++.+-..|+..+.+++|..+..++.-....... ...+..++.+|.++.-.++|.+|.+++..|+...|.
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn-----~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSS-----SLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCH-----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 333477888899999999999999999998521111001 123567889999999999999999999999998876
Q ss_pred CH
Q 005125 480 NK 481 (713)
Q Consensus 480 ~~ 481 (713)
+.
T Consensus 303 ~~ 304 (523)
T 4b4t_S 303 NS 304 (523)
T ss_dssp SS
T ss_pred ch
Confidence 54
No 499
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.33 E-value=1.5 Score=49.83 Aligned_cols=101 Identities=9% Similarity=-0.143 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAI----NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--DPCYHRAHHRL 333 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 333 (713)
..|..+-..|.+.|+.++|..+|.+..+. -.-+...|..+-..|.+.|+.++|.+.|+++.+. .| +...|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 36888999999999999999999876532 2335778999999999999999999999999875 45 47788888
Q ss_pred HHHHHHcCC-HHHHHHHHHHHhhh-hcccc
Q 005125 334 AMLYFRLGE-AEKAVSHYKKSSSL-ANQKD 361 (713)
Q Consensus 334 a~~~~~~g~-~~~A~~~~~~al~~-~~p~~ 361 (713)
-.++.+.|+ .++|.+.|+++... +.|+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCCh
Confidence 889999998 57889999988772 34543
No 500
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.18 E-value=1.1 Score=53.30 Aligned_cols=100 Identities=13% Similarity=-0.009 Sum_probs=78.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAI-----------------------NSSKATYRSNKSAALIGLGRQI 310 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~g~~~ 310 (713)
..+.++..-+.+|.++...|++++|..+|+++-.- ....+.+|.....++.+.+.++
T Consensus 837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~ 916 (1139)
T 4fhn_B 837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI 916 (1139)
T ss_dssp HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence 34677778899999999999999999999887321 0112356777888899999999
Q ss_pred HHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 311 EALVECKEAIRIDPC-YH----RAHHRLAMLYFRLGEAEKAVSHYKKS 353 (713)
Q Consensus 311 ~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~a 353 (713)
.+++..+.|++..+. +. ..|.++-..+...|+|++|...+...
T Consensus 917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 917 DALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 999999999987543 32 26778888899999999998777544
Done!