Query 005126
Match_columns 713
No_of_seqs 472 out of 2730
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 18:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02844 oxidoreductase/ferric 100.0 3E-140 6E-145 1208.6 63.6 710 3-713 4-722 (722)
2 PLN02292 ferric-chelate reduct 100.0 3E-129 5E-134 1114.9 63.3 669 4-712 10-701 (702)
3 PLN02631 ferric-chelate reduct 100.0 6E-128 1E-132 1101.3 62.0 667 5-712 4-698 (699)
4 KOG0039 Ferric reductase, NADH 100.0 5.8E-76 1.2E-80 678.3 47.6 581 7-711 38-646 (646)
5 COG4097 Predicted ferric reduc 100.0 4.6E-38 1E-42 324.7 30.1 356 152-541 39-418 (438)
6 cd06186 NOX_Duox_like_FAD_NADP 100.0 2.6E-28 5.6E-33 246.9 22.2 190 315-541 2-193 (210)
7 cd06189 flavin_oxioreductase N 99.9 1.8E-26 3.9E-31 235.9 21.7 205 313-542 2-208 (224)
8 cd06215 FNR_iron_sulfur_bindin 99.9 2.7E-26 5.8E-31 235.5 22.2 209 313-542 2-215 (231)
9 cd06216 FNR_iron_sulfur_bindin 99.9 3.7E-26 8E-31 236.6 22.2 219 299-542 2-228 (243)
10 PRK08051 fre FMN reductase; Va 99.9 1.1E-25 2.5E-30 231.4 22.3 206 312-542 5-212 (232)
11 cd06210 MMO_FAD_NAD_binding Me 99.9 1E-25 2.2E-30 232.1 21.6 207 312-541 4-218 (236)
12 cd06190 T4MO_e_transfer_like T 99.9 1.1E-25 2.3E-30 231.3 21.1 206 315-542 2-214 (232)
13 cd06217 FNR_iron_sulfur_bindin 99.9 1.6E-25 3.4E-30 230.4 22.0 211 311-542 3-219 (235)
14 cd00322 FNR_like Ferredoxin re 99.9 3.3E-25 7.2E-30 225.5 22.1 204 317-542 3-209 (223)
15 cd06213 oxygenase_e_transfer_s 99.9 3.2E-25 6.9E-30 227.2 21.8 205 312-542 3-211 (227)
16 cd06187 O2ase_reductase_like T 99.9 3.3E-25 7.2E-30 226.3 20.9 205 315-542 2-208 (224)
17 cd06212 monooxygenase_like The 99.9 4.6E-25 1E-29 226.7 22.1 207 312-542 3-215 (232)
18 cd06211 phenol_2-monooxygenase 99.9 4.1E-25 8.9E-30 228.1 21.7 208 311-542 8-222 (238)
19 cd06191 FNR_iron_sulfur_bindin 99.9 5.1E-25 1.1E-29 226.2 21.9 207 313-541 2-214 (231)
20 cd06184 flavohem_like_fad_nad_ 99.9 1.1E-24 2.4E-29 226.0 23.2 210 310-542 7-227 (247)
21 cd06194 FNR_N-term_Iron_sulfur 99.9 7.8E-25 1.7E-29 223.4 21.7 201 315-542 2-205 (222)
22 cd06195 FNR1 Ferredoxin-NADP+ 99.9 6.7E-25 1.4E-29 226.9 20.9 206 314-542 2-219 (241)
23 cd06198 FNR_like_3 NAD(P) bind 99.9 1.1E-24 2.4E-29 221.4 21.6 191 322-541 7-198 (216)
24 cd06209 BenDO_FAD_NAD Benzoate 99.9 1.2E-24 2.7E-29 222.9 22.1 204 312-542 4-211 (228)
25 PRK11872 antC anthranilate dio 99.9 8.5E-25 1.8E-29 237.3 21.8 206 312-542 109-319 (340)
26 cd06221 sulfite_reductase_like 99.9 1.4E-24 3.1E-29 226.1 22.1 202 315-542 2-208 (253)
27 cd06197 FNR_like_2 FAD/NAD(P) 99.9 2.1E-24 4.5E-29 220.2 21.4 182 317-542 3-208 (220)
28 PRK07609 CDP-6-deoxy-delta-3,4 99.9 1.5E-24 3.3E-29 235.5 21.7 207 311-542 104-316 (339)
29 cd06188 NADH_quinone_reductase 99.9 1.3E-24 2.8E-29 230.3 20.3 209 312-542 12-267 (283)
30 PRK10684 HCP oxidoreductase, N 99.9 2E-24 4.4E-29 233.8 22.2 209 311-542 11-221 (332)
31 cd06214 PA_degradation_oxidore 99.9 4.7E-24 1E-28 220.4 23.7 211 311-542 3-224 (241)
32 cd06183 cyt_b5_reduct_like Cyt 99.9 4.4E-24 9.6E-29 219.3 22.1 209 313-541 2-219 (234)
33 cd06196 FNR_like_1 Ferredoxin 99.9 4.1E-24 9E-29 217.5 21.6 198 312-542 3-204 (218)
34 PRK08345 cytochrome-c3 hydroge 99.9 7.7E-24 1.7E-28 224.8 23.5 207 311-542 7-230 (289)
35 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 3.9E-23 8.6E-28 225.6 22.7 210 312-542 4-225 (352)
36 PRK13289 bifunctional nitric o 99.9 4.1E-23 8.8E-28 229.3 23.1 208 312-542 157-376 (399)
37 PTZ00274 cytochrome b5 reducta 99.9 5.3E-23 1.2E-27 220.6 22.7 214 312-540 55-279 (325)
38 cd06218 DHOD_e_trans FAD/NAD b 99.9 2.8E-23 6E-28 215.5 19.6 194 315-542 2-198 (246)
39 cd06192 DHOD_e_trans_like FAD/ 99.9 5.5E-23 1.2E-27 212.9 21.6 194 315-542 2-196 (243)
40 PLN03116 ferredoxin--NADP+ red 99.9 8.6E-23 1.9E-27 218.5 23.7 218 312-544 27-279 (307)
41 PRK10926 ferredoxin-NADP reduc 99.9 6.4E-23 1.4E-27 213.0 21.8 207 312-542 7-224 (248)
42 PRK00054 dihydroorotate dehydr 99.9 6.5E-23 1.4E-27 213.3 21.6 192 312-542 7-199 (250)
43 PRK08221 anaerobic sulfite red 99.9 8E-23 1.7E-27 214.1 21.6 200 312-542 10-210 (263)
44 cd06219 DHOD_e_trans_like1 FAD 99.9 1.2E-22 2.7E-27 211.0 21.6 194 313-542 2-198 (248)
45 PRK06222 ferredoxin-NADP(+) re 99.9 1.6E-22 3.4E-27 213.9 21.4 194 313-542 3-199 (281)
46 cd06208 CYPOR_like_FNR These f 99.9 3.6E-22 7.7E-27 211.8 24.0 216 312-542 11-257 (286)
47 TIGR02911 sulfite_red_B sulfit 99.9 2.1E-22 4.5E-27 210.7 21.0 200 312-542 8-208 (261)
48 PTZ00319 NADH-cytochrome B5 re 99.9 1.9E-22 4E-27 215.1 20.7 206 312-539 36-282 (300)
49 COG1018 Hmp Flavodoxin reducta 99.9 2.9E-22 6.3E-27 208.7 21.4 203 311-541 7-213 (266)
50 cd06182 CYPOR_like NADPH cytoc 99.9 5.4E-22 1.2E-26 208.2 21.8 203 321-542 14-233 (267)
51 PRK05464 Na(+)-translocating N 99.9 3.5E-22 7.5E-27 222.1 21.5 210 311-542 135-391 (409)
52 cd06200 SiR_like1 Cytochrome p 99.9 7.4E-22 1.6E-26 204.7 22.1 196 323-544 17-223 (245)
53 cd06220 DHOD_e_trans_like2 FAD 99.9 4E-22 8.6E-27 205.2 19.9 184 313-542 2-185 (233)
54 PRK05713 hypothetical protein; 99.9 4.6E-22 1E-26 213.6 20.0 196 311-542 93-292 (312)
55 PLN03115 ferredoxin--NADP(+) r 99.9 1.3E-21 2.8E-26 212.2 22.8 206 322-542 108-337 (367)
56 TIGR01941 nqrF NADH:ubiquinone 99.9 5.3E-22 1.1E-26 220.4 20.3 209 312-542 132-387 (405)
57 PRK05802 hypothetical protein; 99.9 3.3E-21 7.1E-26 206.8 21.9 197 312-542 67-272 (320)
58 cd06185 PDR_like Phthalate dio 99.9 5.8E-21 1.3E-25 193.3 20.5 186 316-542 2-194 (211)
59 PF08030 NAD_binding_6: Ferric 99.9 1.3E-21 2.9E-26 188.4 13.2 80 421-502 1-80 (156)
60 KOG0534 NADH-cytochrome b-5 re 99.9 2.6E-20 5.5E-25 193.0 20.9 210 312-541 54-270 (286)
61 PLN02252 nitrate reductase [NA 99.9 1.7E-20 3.8E-25 223.3 22.0 210 311-540 636-871 (888)
62 TIGR03224 benzo_boxA benzoyl-C 99.9 3.2E-20 7E-25 205.7 22.6 209 312-543 145-382 (411)
63 COG0543 UbiB 2-polyprenylpheno 99.9 4.2E-20 9.1E-25 192.1 21.2 197 312-541 10-209 (252)
64 cd06201 SiR_like2 Cytochrome p 99.9 6E-20 1.3E-24 195.0 22.7 202 311-542 47-263 (289)
65 PRK12778 putative bifunctional 99.8 8.1E-19 1.8E-23 209.5 21.6 194 313-542 3-199 (752)
66 cd06193 siderophore_interactin 99.8 2.1E-18 4.6E-23 177.8 18.1 189 315-542 2-216 (235)
67 PF08022 FAD_binding_8: FAD-bi 99.8 4.7E-21 1E-25 172.4 -1.8 98 312-414 4-104 (105)
68 PTZ00306 NADH-dependent fumara 99.8 4E-18 8.6E-23 211.1 23.3 204 320-541 928-1146(1167)
69 PRK12779 putative bifunctional 99.8 1.2E-17 2.6E-22 201.6 23.0 204 312-542 651-865 (944)
70 PRK12775 putative trifunctiona 99.8 7.7E-18 1.7E-22 204.9 20.8 195 313-542 3-199 (1006)
71 PF01794 Ferric_reduct: Ferric 99.7 6.5E-17 1.4E-21 149.6 10.9 121 157-277 1-123 (125)
72 cd06199 SiR Cytochrome p450- l 99.7 1.4E-16 2.9E-21 174.4 14.8 185 334-542 129-326 (360)
73 TIGR01931 cysJ sulfite reducta 99.7 3.4E-16 7.4E-21 181.3 14.0 184 335-542 367-563 (597)
74 cd06206 bifunctional_CYPOR The 99.7 8.3E-16 1.8E-20 169.8 15.1 185 336-542 146-346 (384)
75 cd06207 CyPoR_like NADPH cytoc 99.7 1.5E-15 3.2E-20 167.7 16.8 174 352-542 161-348 (382)
76 PRK06214 sulfite reductase; Pr 99.6 2.8E-14 6.2E-19 161.6 18.3 165 351-536 312-489 (530)
77 cd06203 methionine_synthase_re 99.6 5E-14 1.1E-18 156.2 18.9 178 352-540 171-362 (398)
78 cd06204 CYPOR NADPH cytochrome 99.6 4.4E-14 9.6E-19 157.4 17.9 185 352-542 175-382 (416)
79 PRK10953 cysJ sulfite reductas 99.5 2.8E-14 6E-19 164.8 12.8 178 335-536 370-559 (600)
80 cd06202 Nitric_oxide_synthase 99.5 3.3E-13 7.1E-18 150.0 17.0 175 353-542 175-368 (406)
81 COG2871 NqrF Na+-transporting 99.4 1.1E-12 2.4E-17 132.1 13.1 191 325-537 152-387 (410)
82 PF00175 NAD_binding_1: Oxidor 99.4 9.5E-13 2.1E-17 118.6 10.7 104 426-539 1-107 (109)
83 PF00970 FAD_binding_6: Oxidor 99.1 1.6E-10 3.4E-15 102.6 7.9 91 312-414 2-97 (99)
84 PRK06567 putative bifunctional 99.1 2.4E-09 5.1E-14 127.2 16.6 119 311-445 792-914 (1028)
85 COG0369 CysJ Sulfite reductase 99.0 1E-08 2.2E-13 117.4 17.7 167 353-539 371-550 (587)
86 KOG3378 Globins and related he 98.9 1.1E-08 2.4E-13 103.0 11.0 123 314-446 154-287 (385)
87 KOG1158 NADP/FAD dependent oxi 98.9 2.9E-08 6.2E-13 113.8 14.7 176 351-541 418-610 (645)
88 PRK05419 putative sulfite oxid 98.5 1.1E-05 2.4E-10 81.1 18.2 122 152-282 42-164 (205)
89 KOG1159 NADP-dependent flavopr 98.0 2.1E-05 4.6E-10 85.8 9.2 166 342-538 358-536 (574)
90 COG2717 Predicted membrane pro 97.7 0.0034 7.5E-08 62.6 17.7 119 187-307 71-195 (209)
91 COG2375 ViuB Siderophore-inter 94.6 0.6 1.3E-05 48.7 13.2 138 311-470 19-183 (265)
92 cd06186 NOX_Duox_like_FAD_NADP 94.0 0.039 8.3E-07 55.5 3.0 32 670-711 179-210 (210)
93 PF08021 FAD_binding_9: Sidero 93.0 0.54 1.2E-05 43.1 8.6 89 314-414 2-117 (117)
94 cd06197 FNR_like_2 FAD/NAD(P) 91.7 0.14 3.1E-06 52.2 3.3 29 669-712 192-220 (220)
95 cd06185 PDR_like Phthalate dio 91.3 0.23 5E-06 49.9 4.3 36 648-688 162-197 (211)
96 cd06212 monooxygenase_like The 91.2 0.26 5.7E-06 50.4 4.7 22 667-688 197-218 (232)
97 cd06195 FNR1 Ferredoxin-NADP+ 90.4 0.24 5.2E-06 51.0 3.6 23 666-688 200-222 (241)
98 PRK08051 fre FMN reductase; Va 88.1 0.36 7.7E-06 49.6 2.8 20 669-688 196-216 (232)
99 cd06184 flavohem_like_fad_nad_ 87.3 0.62 1.3E-05 48.1 4.1 37 648-688 194-230 (247)
100 PF00175 NAD_binding_1: Oxidor 86.7 0.75 1.6E-05 40.7 3.8 21 664-684 89-109 (109)
101 cd06209 BenDO_FAD_NAD Benzoate 86.2 0.93 2E-05 46.2 4.6 36 667-712 193-228 (228)
102 cd06188 NADH_quinone_reductase 86.1 0.94 2E-05 48.0 4.7 23 666-688 248-270 (283)
103 cd06215 FNR_iron_sulfur_bindin 85.5 0.6 1.3E-05 47.5 2.8 22 667-688 197-218 (231)
104 cd06210 MMO_FAD_NAD_binding Me 85.0 1.3 2.8E-05 45.4 4.9 21 668-688 202-222 (236)
105 cd06189 flavin_oxioreductase N 84.2 0.72 1.6E-05 46.9 2.7 22 667-688 190-211 (224)
106 cd06213 oxygenase_e_transfer_s 84.1 1.3 2.8E-05 45.1 4.5 22 667-688 193-214 (227)
107 cd06217 FNR_iron_sulfur_bindin 83.9 0.81 1.8E-05 46.7 2.9 22 667-688 201-222 (235)
108 cd06198 FNR_like_3 NAD(P) bind 83.5 0.92 2E-05 45.8 3.1 23 666-688 180-202 (216)
109 cd06187 O2ase_reductase_like T 82.4 1.8 3.9E-05 43.8 4.8 39 648-688 173-211 (224)
110 cd06191 FNR_iron_sulfur_bindin 81.8 1 2.3E-05 45.9 2.8 21 668-688 198-218 (231)
111 COG4097 Predicted ferric reduc 81.1 0.8 1.7E-05 49.6 1.6 22 669-690 403-424 (438)
112 cd06216 FNR_iron_sulfur_bindin 80.9 1.5 3.2E-05 45.2 3.5 22 667-688 210-231 (243)
113 cd06218 DHOD_e_trans FAD/NAD b 80.7 2.6 5.6E-05 43.7 5.3 39 648-688 163-201 (246)
114 cd06220 DHOD_e_trans_like2 FAD 80.1 2.4 5.2E-05 43.4 4.8 48 650-711 153-200 (233)
115 PRK10684 HCP oxidoreductase, N 80.1 1.3 2.8E-05 48.2 2.8 20 669-688 205-224 (332)
116 PRK11872 antC anthranilate dio 78.9 1.4 3.1E-05 48.0 2.8 21 668-688 302-322 (340)
117 PRK05713 hypothetical protein; 78.7 1.5 3.2E-05 47.3 2.7 21 668-688 275-295 (312)
118 TIGR02160 PA_CoA_Oxy5 phenylac 77.9 3 6.5E-05 45.6 4.9 21 668-688 208-228 (352)
119 cd06211 phenol_2-monooxygenase 77.7 2.7 6E-05 43.1 4.3 22 667-688 204-225 (238)
120 cd06194 FNR_N-term_Iron_sulfur 77.0 2 4.4E-05 43.4 3.1 23 666-688 186-208 (222)
121 cd06214 PA_degradation_oxidore 73.8 4.8 0.0001 41.2 5.0 23 666-688 205-227 (241)
122 PRK05464 Na(+)-translocating N 73.2 2.6 5.7E-05 47.2 3.0 22 667-688 373-394 (409)
123 PRK13289 bifunctional nitric o 73.2 3.7 7.9E-05 45.7 4.1 22 667-688 358-379 (399)
124 PRK07609 CDP-6-deoxy-delta-3,4 73.0 2.5 5.4E-05 46.0 2.7 22 667-688 298-319 (339)
125 cd06190 T4MO_e_transfer_like T 72.8 3 6.5E-05 42.5 3.1 23 666-688 195-217 (232)
126 cd06196 FNR_like_1 Ferredoxin 72.3 2.5 5.4E-05 42.6 2.3 21 668-688 187-207 (218)
127 PRK06222 ferredoxin-NADP(+) re 70.1 5.9 0.00013 42.0 4.6 21 669-689 183-203 (281)
128 KOG0039 Ferric reductase, NADH 70.0 3.1 6.6E-05 49.5 2.7 101 106-215 134-242 (646)
129 TIGR01941 nqrF NADH:ubiquinone 68.2 3.9 8.4E-05 45.8 2.9 22 667-688 369-390 (405)
130 cd00322 FNR_like Ferredoxin re 66.9 4 8.6E-05 41.0 2.5 23 666-688 190-212 (223)
131 PRK10926 ferredoxin-NADP reduc 66.1 4.3 9.3E-05 42.1 2.6 22 667-688 206-227 (248)
132 KOG0534 NADH-cytochrome b-5 re 64.0 6.2 0.00013 41.9 3.2 38 648-686 235-272 (286)
133 cd06208 CYPOR_like_FNR These f 60.9 9.8 0.00021 40.4 4.2 22 667-688 239-260 (286)
134 cd06201 SiR_like2 Cytochrome p 58.2 7.1 0.00015 41.6 2.6 21 668-688 246-266 (289)
135 cd06219 DHOD_e_trans_like1 FAD 58.1 14 0.0003 38.2 4.7 19 670-688 183-201 (248)
136 cd06193 siderophore_interactin 56.0 8.1 0.00018 39.6 2.5 23 666-688 197-219 (235)
137 cd06182 CYPOR_like NADPH cytoc 55.4 7.9 0.00017 40.7 2.3 20 669-688 216-236 (267)
138 COG1018 Hmp Flavodoxin reducta 54.8 11 0.00024 39.7 3.3 39 646-688 179-217 (266)
139 cd06200 SiR_like1 Cytochrome p 53.3 9.4 0.0002 39.5 2.4 20 669-688 204-224 (245)
140 PF00033 Cytochrom_B_N: Cytoch 53.2 2.1E+02 0.0047 27.4 12.1 31 183-213 40-70 (188)
141 PLN03116 ferredoxin--NADP+ red 52.3 18 0.00038 38.9 4.4 21 668-688 260-280 (307)
142 cd06183 cyt_b5_reduct_like Cyt 51.1 14 0.0003 37.5 3.2 23 666-688 200-223 (234)
143 PRK08345 cytochrome-c3 hydroge 50.4 11 0.00024 40.0 2.6 22 667-688 212-233 (289)
144 cd06192 DHOD_e_trans_like FAD/ 48.8 13 0.00027 38.3 2.5 21 669-689 180-200 (243)
145 cd06221 sulfite_reductase_like 48.7 13 0.00027 38.7 2.6 23 667-689 190-212 (253)
146 PRK00054 dihydroorotate dehydr 47.0 20 0.00043 37.1 3.7 36 649-688 167-202 (250)
147 cd06206 bifunctional_CYPOR The 45.7 14 0.0003 41.0 2.4 28 322-349 15-42 (384)
148 PLN03115 ferredoxin--NADP(+) r 44.3 29 0.00064 38.3 4.6 22 667-688 319-340 (367)
149 PTZ00274 cytochrome b5 reducta 44.1 16 0.00034 39.7 2.5 18 668-685 264-281 (325)
150 PRK05802 hypothetical protein; 40.9 19 0.00042 39.0 2.5 21 667-688 255-275 (320)
151 COG0543 UbiB 2-polyprenylpheno 40.2 21 0.00045 37.2 2.5 24 667-690 192-215 (252)
152 TIGR02911 sulfite_red_B sulfit 37.9 23 0.00051 37.0 2.6 22 667-688 190-211 (261)
153 cd06207 CyPoR_like NADPH cytoc 37.9 20 0.00043 39.8 2.1 28 322-349 15-43 (382)
154 TIGR03224 benzo_boxA benzoyl-C 35.8 40 0.00088 37.8 4.2 21 668-688 364-388 (411)
155 PF14358 DUF4405: Domain of un 34.8 45 0.00098 26.7 3.2 31 180-210 32-62 (64)
156 PF01292 Ni_hydr_CYTB: Prokary 34.7 2.8E+02 0.006 26.6 9.5 23 189-211 42-64 (182)
157 PF13706 PepSY_TM_3: PepSY-ass 33.5 51 0.0011 23.6 2.9 20 188-207 3-22 (37)
158 cd08554 Cyt_b561 Eukaryotic cy 33.4 92 0.002 28.7 5.5 23 186-208 105-127 (131)
159 cd06204 CYPOR NADPH cytochrome 33.0 28 0.0006 39.2 2.2 27 323-349 23-50 (416)
160 cd06199 SiR Cytochrome p450- l 32.5 27 0.00058 38.4 2.0 28 322-349 15-43 (360)
161 cd06202 Nitric_oxide_synthase 30.9 33 0.00071 38.4 2.4 28 322-349 15-44 (406)
162 PRK12779 putative bifunctional 29.8 35 0.00075 42.6 2.5 21 669-689 849-869 (944)
163 PRK08221 anaerobic sulfite red 29.5 39 0.00084 35.3 2.6 22 667-688 192-213 (263)
164 PF00667 FAD_binding_1: FAD bi 29.0 50 0.0011 33.5 3.2 27 352-378 176-202 (219)
165 PF03188 Cytochrom_B561: Eukar 28.7 3.4E+02 0.0073 24.9 8.6 21 187-207 105-125 (137)
166 PF10854 DUF2649: Protein of u 28.2 45 0.00098 26.5 2.0 20 14-33 47-66 (67)
167 PRK12778 putative bifunctional 27.2 41 0.0009 40.9 2.6 20 670-689 184-203 (752)
168 PTZ00319 NADH-cytochrome B5 re 26.8 43 0.00092 35.8 2.3 22 667-688 267-289 (300)
169 TIGR01282 nifD nitrogenase mol 26.5 61 0.0013 37.1 3.6 67 639-711 106-174 (466)
170 COG2717 Predicted membrane pro 26.5 4.5E+02 0.0098 26.7 9.3 59 146-210 108-166 (209)
171 PF13172 PepSY_TM_1: PepSY-ass 26.2 87 0.0019 21.8 3.0 22 187-208 3-24 (34)
172 PF03929 PepSY_TM: PepSY-assoc 25.7 78 0.0017 21.2 2.5 19 190-208 2-20 (27)
173 cd01976 Nitrogenase_MoFe_alpha 25.3 61 0.0013 36.5 3.3 67 639-711 73-141 (421)
174 PRK12775 putative trifunctiona 25.1 82 0.0018 39.7 4.7 38 650-689 166-203 (1006)
175 PRK12446 undecaprenyldiphospho 24.1 88 0.0019 34.2 4.2 24 422-445 2-27 (352)
176 PTZ00306 NADH-dependent fumara 23.6 51 0.0011 42.3 2.5 23 666-688 1128-1150(1167)
177 cd06203 methionine_synthase_re 23.6 54 0.0012 36.6 2.4 28 322-349 15-43 (398)
178 TIGR01931 cysJ sulfite reducta 23.1 49 0.0011 39.1 2.1 37 313-349 238-280 (597)
179 cd08766 Cyt_b561_ACYB-1_like P 21.6 4.7E+02 0.01 24.9 8.0 22 187-208 111-132 (144)
180 PF06210 DUF1003: Protein of u 20.9 84 0.0018 28.4 2.6 20 13-32 6-25 (108)
181 PF01794 Ferric_reduct: Ferric 20.2 1.9E+02 0.0042 25.7 5.0 45 238-282 2-52 (125)
182 PF06223 Phage_tail_T: Minor t 20.1 50 0.0011 29.5 1.0 14 645-659 5-18 (103)
No 1
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=2.7e-140 Score=1208.59 Aligned_cols=710 Identities=73% Similarity=1.235 Sum_probs=635.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhchhccCceEecccchhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 005126 3 NTALVILKMLMILICAAWIALWILKPTNLWTKIWHEAEDRARPTLFGYYGLNFAVSTFPVIALAIIGFVYLHLLPRKPRI 82 (713)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~pvl~ia~~~~~~~~~~~~~~~~ 82 (713)
+.+++++|++|+++|+||+++|||+||+.|+++|+++.|..++||||++|.++++|++|+|++|++||+|+++.++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~~t~fg~~g~~~~~~~~p~~~~a~~~~~yl~~~~~~~~~ 83 (722)
T PLN02844 4 ALTLLVLKLLMILIFAGWIALWILKPTNLWTRKWKQAEDSARHTVFGYYGLNFAVYTFPPIALAIIGLVYLSLLSQEPHR 83 (722)
T ss_pred hHHHHHHHHHHHHHHHHHHHHheeeCCHHHHhhhhhHHhcccCceecccchhhHhHhhHHHHHHHHHHHheeeccccCcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999886533
Q ss_pred c-cccccccccccceeeccccccchHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchhhHHhhhhhhhHHHHHH
Q 005126 83 R-QARSSATALSNPLVVNSIVGILSSFEILLVFLFVIFLVWTYYARISNDFKKLMPVKSLKLDTWQLKYLRVATRFGLLA 161 (713)
Q Consensus 83 ~-~~~~~~~~~~~p~~~~~~~gi~tr~e~l~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~r~G~la 161 (713)
. ..+.++..|++|++|++|+|++|.+|.+++++|+++++|.++.|++++|+.+.+.+..+.+.||.++..+|+|+|++|
T Consensus 84 ~~~~~~~~~~~~~p~lv~~~~givs~~e~~~~~~f~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~R~G~la 163 (722)
T PLN02844 84 RRGARSATIGVSNPVIVNSFIGILSCLEILAVLLFFLFLAWTFYARISNDFKKLMPVKSLNLNLWQLKYLRVATRFGLLA 163 (722)
T ss_pred ccccccccccccCcEEecCCceeeeHHHHHHHHHHHHHHHHHHHHHHHhhhhhhCccccccchhHHHHHHHHHHHHHHHH
Confidence 2 445556668999999999999999999999999999999999999999999988877667789999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHhhCCCchhhHHHHHHHHHHHHHHHHHhhccceeecccccchhhHHHHHhhcccchhhHHHH
Q 005126 162 EACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIA 241 (713)
Q Consensus 162 ~~~l~ll~l~~~Rn~~l~~l~g~~~~~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ia 241 (713)
.+|||++++|++|||++.+++|+|||+++.||||+|+++++++++|+++|++.|...+..+++++.|+.++..+++|+++
T Consensus 164 ~~~Lpll~llv~Rnn~l~~ltGis~e~~i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~~~~~~w~~~~~~~~~G~IA 243 (722)
T PLN02844 164 EACLALLLLPVLRGLALFRLLGIQFEASVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQDEIWKWQKTGRIYLAGEIA 243 (722)
T ss_pred HHHHHHHHHHHhcccHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhccCcchhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999888877766666788887777778999999
Q ss_pred HHHHHHHHHhcchHHHhhhhHHhHHHHHHHHHHHHHHhhhcCcchhhHHHHHHHHHHHHHHHHhhhccCceeEEEEEEec
Q 005126 242 LVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFP 321 (713)
Q Consensus 242 l~~~~~m~v~S~~~iRr~~YE~F~~~H~l~~v~~v~~~~H~~~~~~~~~~~~i~l~~~dR~~R~~r~~~~~~ivs~~~l~ 321 (713)
++++++|+++|++++||++||+|+++|++++++++++++|+++.+.+|++|++++|++||++|++++++..++++++.++
T Consensus 244 lv~l~iL~itSl~~iRR~~YElF~~~H~L~ivflv~~~~H~~~~~~~~v~~~i~L~~~DRllR~~~s~~~~~vvs~~~~~ 323 (722)
T PLN02844 244 LVTGLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLRIVQSRPETCILSARLFP 323 (722)
T ss_pred HHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHhhhHhhcCcchhhhHHHHHHHHHHHHhheEEEeeeEEEEEEEEec
Confidence 99999999999999999999999999999988899999999887778899999999999999999988777788899999
Q ss_pred CCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHhcccCCCCCCc
Q 005126 322 SKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMR 401 (713)
Q Consensus 322 ~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~~~~~~~~~~~ 401 (713)
++++++++++++.++|+||||+++++|..+++|||||||+|+|+.+++.+++.||+.||||++|++.+++..+.+.+...
T Consensus 324 ~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~~g~~~~~ 403 (722)
T PLN02844 324 CKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSETNQMN 403 (722)
T ss_pred CCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhccCCCCccc
Confidence 99999999998899999999999999999999999999999886567889999999999999999987643322212222
Q ss_pred ceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhh
Q 005126 402 CIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLS 481 (713)
Q Consensus 402 ~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~ 481 (713)
..++.||||||.++.+..+++++++||||+||||++|+++++.++++ ...+.+++++|+|++|+.+|+.+++++.+++.
T Consensus 404 ~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~-~~~~~~~~V~LIw~vR~~~dL~~~del~~~l~ 482 (722)
T PLN02844 404 CIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSS-SRYRFPKRVQLIYVVKKSQDICLLNPISSLLL 482 (722)
T ss_pred ceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccc-cccCCCCcEEEEEEECCHHHhhhHHHHHHHhH
Confidence 36899999999887677789999999999999999999999987532 22334578999999999999999999876554
Q ss_pred hccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCC-CeeEEcCcchHHHHHHHHHHHHHHHHHHHHhhceEE
Q 005126 482 NQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQ-SNYAVNGLESLIWMAALVGITSILFVIFLISLNHIF 560 (713)
Q Consensus 482 ~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~vcGp~~~~~~a~~~~~s~~~f~~~~~~~~~~~ 560 (713)
+...++.++++++|+|||+.+....++.+++..+.++++++++ +.+.+|||++++|+++++++|+++|++++++++|||
T Consensus 483 ~~~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~lw~~~~~~~s~~~f~~~~~~~~~~~ 562 (722)
T PLN02844 483 NQSSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFSTKCSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIF 562 (722)
T ss_pred HhHHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcCCCCCCCceEEeCCCchHHHHHHHHHHHHHHHHHHHHHheEE
Confidence 3222345899999999998776666777777677777777775 789999999999999999999999999999999999
Q ss_pred ecCCCCCcc-ccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCCCcCCCcc-----ccc
Q 005126 561 VPVEKKLPS-EKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKA-----VQV 634 (713)
Q Consensus 561 i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-----~~~ 634 (713)
||+|||++. +|++.|+++|.+++++|+|++|+|+++||+++|++|++|+++|.|+|++++.|..+++++.+ .+.
T Consensus 563 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (722)
T PLN02844 563 IPSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEIPRVSQKQGIKPEEGSMEK 642 (722)
T ss_pred eccccccccchhcccccccccccCCCchHHHHHHHHHHHHHHheecceEeEeeeccccccCCccccccccCCCCCccccc
Confidence 999999976 99999999999999999999999999999999999999999988999998888766544432 224
Q ss_pred CCCccccccceecCCCChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHHhhhhhhhhccCC-CCCCceeeeccCccC
Q 005126 635 LGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNAN-KDKPYFNFHSLNFTF 713 (713)
Q Consensus 635 ~~~~~~~~~~h~g~RP~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c~~~~~~~~~~~~-~~~~~f~fhs~sF~l 713 (713)
..++++++++|||+|||+++||++++|+++|+||||+|||||+||++||++||++|+|+|++++ +.+++|||||+||||
T Consensus 643 ~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~hs~~f~l 722 (722)
T PLN02844 643 RGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKMYFSFHSLNFTL 722 (722)
T ss_pred cccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccccccccCCceeeeecccCC
Confidence 5577899999999999999999999999999999999999999999999999999999998755 447999999999997
No 2
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=2.5e-129 Score=1114.88 Aligned_cols=669 Identities=35% Similarity=0.698 Sum_probs=567.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhh-chhcc-CceEecccchhHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 005126 4 TALVILKMLMILICAAWIALWILKPTNLWTKIWHE-AEDRA-RPTLFGYYGLNFAVSTFPVIALAIIGFVYLHLLPRKPR 81 (713)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~-~~~~~~~~g~~~~~~~~pvl~ia~~~~~~~~~~~~~~~ 81 (713)
+.++++|++|+++|+||+++|+|+||+.|+++|++ ..++. ++||||.+|.++++|++|||++|++||+|+|+.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~~~~t~fg~~g~~~~~~~~p~~~~a~~~~~~l~~~~~~~~ 89 (702)
T PLN02292 10 VIKGVIKFLMMVILMGTIVIWIMMPTSTYKTIWLPSMRAKLGKSTYFGAPGVNLLVYMFPMILLACLGCIYLHLKKQTTV 89 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeccHHHHhhccHHHHHhccCCceecccchhhHHHhhHHHHHHHHHHHHheecccccc
Confidence 45679999999999999999999999999999998 44555 69999999999999999999999999999999877521
Q ss_pred cc------cccccccccccceeeccccccchHHHHHHHHHHHHHHHHHhhhhccccccccccccccc--chhhHHhhhhh
Q 005126 82 IR------QARSSATALSNPLVVNSIVGILSSFEILLVFLFVIFLVWTYYARISNDFKKLMPVKSLK--LDTWQLKYLRV 153 (713)
Q Consensus 82 ~~------~~~~~~~~~~~p~~~~~~~gi~tr~e~l~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v 153 (713)
.. .++.+++.|++|++|++|+|++||+|.+++++|+++++|+++++.++++..+.|.+..+ .+.|+++++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~p~lv~~~~G~vt~~e~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v 169 (702)
T PLN02292 90 NQFNREVRKKGGKFGALRRPMLVKGPLGIVTVTEVMFLAMFMALLLWSLANYMYNTFVTITPQSAATDGESLWQARLDSI 169 (702)
T ss_pred cchhhcccccccceeeecCcEEeeCCcceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHHHH
Confidence 11 24456788999999999999999999999999999999999999999987766653322 45788899999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHHHhhCCCchhhHHHHHHHHHHHHHHHHHhhccceeecccccchhhHHHHHhhccc
Q 005126 154 ATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGR 233 (713)
Q Consensus 154 a~r~G~la~~~l~ll~l~~~Rn~~l~~l~g~~~~~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~~~~~~~~~~~~~ 233 (713)
|+|+|++|.+|||++++|++|||++.+++|||||+++.||||+||++++++++|+++|++.|...++.. ++..|.+.+.
T Consensus 170 g~R~Gila~~~lpll~l~~~Rnn~L~~ltG~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~~-~~~~w~~~~~ 248 (702)
T PLN02292 170 AVRLGLVGNICLAFLFYPVARGSSLLAAVGLTSESSIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQVS-QMLEWDRTGV 248 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-hhhhccccch
Confidence 999999999999999999999999999999999999999999999999999999999998886555432 3456655566
Q ss_pred chhhHHHHHHHHHHHHHhcchHHHhhhhHHhHHHHHHHHHHHHHHhhhcCcchhhHHHHHHHHHHHHHHHHhhhccCcee
Q 005126 234 IYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETC 313 (713)
Q Consensus 234 ~~~~G~ial~~~~~m~v~S~~~iRr~~YE~F~~~H~l~~v~~v~~~~H~~~~~~~~~~~~i~l~~~dR~~R~~r~~~~~~ 313 (713)
.+++|++|++++++|+++|++++||++||+|+++|++++++++++++|++..+.++++|++++|++||++|++|.+...+
T Consensus 249 ~~i~G~iAlv~~~il~v~Sl~~iRR~~YE~F~~~HiL~~v~~v~~~~H~~~~~~~~~~~~i~l~~~DR~lR~~r~~~~~~ 328 (702)
T PLN02292 249 SNLAGEIALVAGLVMWATTYPKIRRRFFEVFFYTHYLYIVFMLFFVFHVGISFALISFPGFYIFLVDRFLRFLQSRNNVK 328 (702)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhcccHhHHHHHHHHHHHHeeeehhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceE
Confidence 78999999999999999999999999999999999999888888999997655567889999999999999999887788
Q ss_pred EEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHhcc
Q 005126 314 ILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAEL 393 (713)
Q Consensus 314 ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~~~ 393 (713)
+++++.++++++++++++++.++++||||+|+++|..+.+|+|||||+|+|.+++++++++||+.|++|++|++.++.
T Consensus 329 Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~-- 406 (702)
T PLN02292 329 LVSARVLPCDTVELNFSKNPMLMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSS-- 406 (702)
T ss_pred EEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCC--
Confidence 889999999999999999888999999999999999889999999999998556778999999999999999987641
Q ss_pred cCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhH
Q 005126 394 DSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLL 473 (713)
Q Consensus 394 ~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~ 473 (713)
.++..+.++.||||||++..+..+++++++||||+||||++|+++++.++.. ++....++++|+|++|+.+|+.+.
T Consensus 407 ---gd~i~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~-~~~~~~~~V~LIw~vR~~~Dl~~l 482 (702)
T PLN02292 407 ---SDQIDRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSS-TETCKIPKITLICAFKNSSDLSML 482 (702)
T ss_pred ---CCccccceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccc-cccCCCCcEEEEEEECCHHHhhHH
Confidence 1222346899999999876566778999999999999999999999987531 111224789999999999999999
Q ss_pred HhHhHHhh--hccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCC----CCeeEEcCcchHHHHHHHHHHHHH
Q 005126 474 NSISPLLS--NQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGT----QSNYAVNGLESLIWMAALVGITSI 547 (713)
Q Consensus 474 ~~l~~~l~--~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~vcGp~~~~~~a~~~~~s~~ 547 (713)
+++.++++ .+..++.++++++|+|||+++.. ++-.......+...+++ +..+.+||||+++|+++++++|++
T Consensus 483 d~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w~~~~~~~s~~ 560 (702)
T PLN02292 483 DLILPTSGLETELSSFIDIQIKAFVTREKEAGV--KESTGNMNIIKTLWFKPNLSDQPISPILGPNSWLWLAAILSSSFL 560 (702)
T ss_pred HHHHHhhhhHHHHhhcCCceEEEEEeCCCCCCC--cccccchhhhhhhcCCCCCCCCceEEEeCCCchHHHHHHHHHHHH
Confidence 98887663 12234579999999999986653 11122223333333333 367899999999999999999999
Q ss_pred HHHHHHHhhceEEe-cCCCCCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcC---CCC
Q 005126 548 LFVIFLISLNHIFV-PVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQ---TPP 623 (713)
Q Consensus 548 ~f~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 623 (713)
+|+++++++++||| |+|||+ +++++|++++|++++||++|+++++++++ |||+++. .+.
T Consensus 561 ~f~~~~~~~~~y~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--w~~~~~~~~~~~~ 623 (702)
T PLN02292 561 IFIIIIAIITRYHIYPIDQNS---------------NKYTLAYKSLIYLLVISISVVATSTAAML--WNKKKYYKKSSQQ 623 (702)
T ss_pred HHHHHHHHhheeEeccccCCC---------------CCCccHHHHHHHHHHHHHHhhhhhhHHHh--hcccccccchhcc
Confidence 99999999999999 999988 45889999999999999999998888877 4544322 222
Q ss_pred CCc-CCCcccc--cCCCccccccceecCCCChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHHhhhhhhhhccCCCC
Q 005126 624 VSL-NQGKAVQ--VLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNANKD 700 (713)
Q Consensus 624 ~s~-~~~~~~~--~~~~~~~~~~~h~g~RP~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c~~~~~~~~~~~~~~ 700 (713)
... +..++.| +.+++++.+++|||+|||+|+||+ +++|+||||+|||||+||+|||++|++++
T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~----~~~~~~vgvlv~gp~~~~~~va~~c~s~~---------- 689 (702)
T PLN02292 624 VDNVDSPREIESSPQQLLVQRTNIHYGERPNLNKLLV----GLKGSSVGVLVCGPKKMRQKVAKICSSGL---------- 689 (702)
T ss_pred ccccccccccccCcccccccceeeeccCCCCHHHHHH----hcCCCceeEEEECcHHHHHHHHHHHhcCC----------
Confidence 211 1112222 678899999999999999999994 56899999999999999999999999944
Q ss_pred CCceeeeccCcc
Q 005126 701 KPYFNFHSLNFT 712 (713)
Q Consensus 701 ~~~f~fhs~sF~ 712 (713)
+++|||||+|||
T Consensus 690 ~~~~~~~s~sf~ 701 (702)
T PLN02292 690 AENLHFESISFS 701 (702)
T ss_pred CcceeEEeeccc
Confidence 799999999998
No 3
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=5.8e-128 Score=1101.29 Aligned_cols=667 Identities=31% Similarity=0.627 Sum_probs=560.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhch-hccCceEecccchhHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 005126 5 ALVILKMLMILICAAWIALWILKPTNLWTKIWHEAE-DRARPTLFGYYGLNFAVSTFPVIALAIIGFVYLHLLPRKPRIR 83 (713)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~pvl~ia~~~~~~~~~~~~~~~~~ 83 (713)
.++++|++|+++|+||+++|+|+||++|+++|++++ ++.++||||.+|.++++|++|||++|++||+|+|+.+++....
T Consensus 4 ~~~~~~~~~~~~f~~~~~~~~~~pt~~~~~~~~~~~~~~~~~t~fg~~g~~~l~~~~p~~~~a~~~~~yl~~~~~~~~~~ 83 (699)
T PLN02631 4 MRSLVKMLMVVLFLGWIFVWIMISTNLFKSKWTPKLAKNLNTTYFGPQGTNLVLLTVPMMFIAVLSCVYLHTQKKPTQPQ 83 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeCcHHHHhhhhHHHHhhhcCceeccccchhhhhhhHHHHHHHHHHHheeeccccCcch
Confidence 456999999999999999999999999999999999 6679999999999999999999999999999999988764322
Q ss_pred cccccccccccceeeccccccchHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchhhHHhhhhhhhHHHHHHHH
Q 005126 84 QARSSATALSNPLVVNSIVGILSSFEILLVFLFVIFLVWTYYARISNDFKKLMPVKSLKLDTWQLKYLRVATRFGLLAEA 163 (713)
Q Consensus 84 ~~~~~~~~~~~p~~~~~~~gi~tr~e~l~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~r~G~la~~ 163 (713)
..+..++.|++|++|++|+|++|..|.+++++|+++++|+++.|..++|.--.+. ....+.|+++++.+|+|+|++|.+
T Consensus 84 ~~~~~~~~~~~p~lv~~~~givs~~e~~~~~~f~~~~~w~~~~y~~~~~~~~~~~-~~~~~~~~~~l~~ig~RtGila~~ 162 (699)
T PLN02631 84 REWKLKRRMGRVIMVMNPLGIVTATELTFSLLFVALLAWSLYNYLYLSYHVHLHN-DDNAKIWQAKFRAFGLRIGYVGHI 162 (699)
T ss_pred hhccccccccCcEEeeCCceeeeHHHHHHHHHHHHHHHHHHHHHHHhhheeccCC-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 2223334599999999999999999999999999999999999999998523333 333578999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHhhCCCchhhHHHHHHHHHHHHHHHHHhhccceeecccccchhhHHHHHhhcccchhhHHHHHH
Q 005126 164 CLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALV 243 (713)
Q Consensus 164 ~l~ll~l~~~Rn~~l~~l~g~~~~~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ial~ 243 (713)
|||++++|++|||++.+++||+||+++.||||+||++++++++|+++|++.|...+... +...|......+++|++|++
T Consensus 163 ~lpll~L~a~Rnn~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~~-~~~~w~~~~~~~~~GviA~v 241 (699)
T PLN02631 163 CWAFLFFPVTRASTILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLM-ETFAWNPTYVPNLAGTIAMV 241 (699)
T ss_pred HHHHHHHHHhccCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh-hhhhcccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987776544332 23345444444689999999
Q ss_pred HHHHHHHhcchHHHhhhhHHhHHHHHHHHHHHHHHhhhcCcchhhHHHHHHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 005126 244 TGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSK 323 (713)
Q Consensus 244 ~~~~m~v~S~~~iRr~~YE~F~~~H~l~~v~~v~~~~H~~~~~~~~~~~~i~l~~~dR~~R~~r~~~~~~ivs~~~l~~~ 323 (713)
++++|+++|++++||++||+|+++|++++++++++++|+++.+.++++|++++|++||++|++|+....++++++.+++|
T Consensus 242 ~~~lm~~~Sl~~~RRr~YE~F~~~Hillaifiv~~~~H~g~~w~~~~~~~ialw~~DR~lR~~r~~~~~~lv~~~~l~~d 321 (699)
T PLN02631 242 IGIAMWVTSLPSFRRKKFELFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRFLQSTKRSRLVSARILPSD 321 (699)
T ss_pred HHHHHHHhccHHHHhhhhhHHHHHHHHHHHHHHheEEecCCchHHHHHHHHHHHHHHHHHHHHHHhceEEEEEEEEeCCC
Confidence 99999999999999999999999999998888899999988777788999999999999999998877888899999999
Q ss_pred eEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHhcccCCCCCCcce
Q 005126 324 AIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCI 403 (713)
Q Consensus 324 ~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~~~~~~~~~~~~~ 403 (713)
+++++++++++++|+||||+++++|..+.+|||||||+|+|++++++++++||+.|++|++|++.++. ...+.
T Consensus 322 ~l~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~-------~g~~i 394 (699)
T PLN02631 322 NLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSS-------SIDSL 394 (699)
T ss_pred eEEEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhc-------CCCee
Confidence 99999998888999999999999999999999999999998656788999999999999999997652 11257
Q ss_pred eEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhh-h
Q 005126 404 PVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLS-N 482 (713)
Q Consensus 404 ~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~-~ 482 (713)
++.+|||||++..+..+++++|+||||+||||++|++++++++..+ ...+.++++|+|++|+.+|+.+.+|+.+... .
T Consensus 395 ~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~-~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~ 473 (699)
T PLN02631 395 EVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQN-PSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISV 473 (699)
T ss_pred EEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccc-cccCCCcEEEEEEECCHHHhhhHHHHhhhccch
Confidence 8999999998766777899999999999999999999999875321 1223458999999999999998888865211 1
Q ss_pred ccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCC----CCeeEEcCcchHHHHHHHHHHHHHHHHHHHHhhce
Q 005126 483 QQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGT----QSNYAVNGLESLIWMAALVGITSILFVIFLISLNH 558 (713)
Q Consensus 483 ~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~vcGp~~~~~~a~~~~~s~~~f~~~~~~~~~ 558 (713)
...++.++++++|+|||+++.+ .+ +.....++.++.+ .....+.||++++|+++++++|+++|+++++++++
T Consensus 474 ~~l~~~ni~i~iyVTR~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lw~~~~~~~s~~~f~~~~~~~~~ 549 (699)
T PLN02631 474 SDISRLNLRIEAYITREDKKPE--TT--DDHRLLQTKWFKPQPLDSPISPVLGPNNFLWLGVVILSSFVMFLLLIGIVTR 549 (699)
T ss_pred hhhhcCceEEEEEEcCCCCCcc--cc--cccccccccccccCCCCCCceeeecCCccHHHHHHHHHHHHHHHHHHHhhhe
Confidence 1113469999999999976641 11 1122334444433 25688899999999999999999999999999999
Q ss_pred EEe-cCCCCCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCC--------------CC
Q 005126 559 IFV-PVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQT--------------PP 623 (713)
Q Consensus 559 ~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 623 (713)
||| |+|||+ ...+++|+++++++++.|++|+.+++++++|..+.++++. |.
T Consensus 550 y~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (699)
T PLN02631 550 YYIYPVDHNT--------------GSIYNFSYRGLWDMFLGSVCIFISSSIVFLWRKKQNKEGDKESKKQVQSVEFQTPT 615 (699)
T ss_pred eEecccCCCC--------------CcccchHHHHHHHHHHHHhheeccceeeeeechhhccccccchhhccccccCCCCC
Confidence 999 999988 3578899999999988888888788888774322222211 22
Q ss_pred CCcCCC-----ccc--ccCCCccccccceecCCCChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHHhhhhhhhhcc
Q 005126 624 VSLNQG-----KAV--QVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMN 696 (713)
Q Consensus 624 ~s~~~~-----~~~--~~~~~~~~~~~~h~g~RP~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c~~~~~~~~~~ 696 (713)
.++.++ ++. ++.+++++.+++|||+|||+|+||.| +.+++||||+|||||+||+|||++|++++
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~---~~~~~~vgvlv~gp~~~~~~va~~c~s~~------ 686 (699)
T PLN02631 616 SSPGSWFHGHERELESVPYQSIVQATSVHFGSKPNLKKILLE---AEGSEDVGVMVCGPRKMRHEVAKICSSGL------ 686 (699)
T ss_pred CCCcccccccchhhhcccccccccceeeeecCCCCHHHHHHh---ccCCCceeEEEECcHHHHHHHHHHHhcCC------
Confidence 222221 122 26778999999999999999999984 33456999999999999999999999944
Q ss_pred CCCCCCceeeeccCcc
Q 005126 697 ANKDKPYFNFHSLNFT 712 (713)
Q Consensus 697 ~~~~~~~f~fhs~sF~ 712 (713)
+++|||||+|||
T Consensus 687 ----~~~~~f~s~sf~ 698 (699)
T PLN02631 687 ----AKNLHFEAISFN 698 (699)
T ss_pred ----CcceeEEeeccc
Confidence 899999999998
No 4
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.8e-76 Score=678.33 Aligned_cols=581 Identities=27% Similarity=0.458 Sum_probs=460.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhchhccCceEecccchhHHHHHHHHHHHHHHHHHH-Hhh-cCCCCcccc
Q 005126 7 VILKMLMILICAAWIALWILKPTNLWTKIWHEAEDRARPTLFGYYGLNFAVSTFPVIALAIIGFVY-LHL-LPRKPRIRQ 84 (713)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~pvl~ia~~~~~~-~~~-~~~~~~~~~ 84 (713)
.+.+++|..++++| ..|++.++..++..|.+.+|.....|++..+...++...|..+.+..++.+ .+. ..+..++..
T Consensus 38 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (646)
T KOG0039|consen 38 EVRELIMSSISANW-LSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQIPTLLFAILLSFANLSLLLSQPLKPTR 116 (646)
T ss_pred HHHHHHHHHHHhhh-hhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhchHHHHHHHHHHHHHHhhhcccccccc
Confidence 47899999999999 999999999999999999988876699999999999999999998888886 111 111111001
Q ss_pred ccccccccccceeeccccccchHHHHHHHHHHHHHHHHHhhhhcccc-----cccc-ccccc-ccchhhHH--hhhhhhh
Q 005126 85 ARSSATALSNPLVVNSIVGILSSFEILLVFLFVIFLVWTYYARISND-----FKKL-MPVKS-LKLDTWQL--KYLRVAT 155 (713)
Q Consensus 85 ~~~~~~~~~~p~~~~~~~gi~tr~e~l~i~~~~~l~~~~~~~~~~~~-----~~~~-~~~~~-~~~~~~~~--~~~~va~ 155 (713)
.....+.++++..+....+...+.+.+++.+++++..|.++.|...+ +... .+... ...+.++. ....+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~~~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~ 196 (646)
T KOG0039|consen 117 RKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFTWRFLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRN 196 (646)
T ss_pred ccccchheeeeeeeeccceEeeeeehHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHH
Confidence 12334455566556568888999999999999999998876655433 1011 11111 11123333 3445778
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhCCCchhhHHHHHHHHHHHHHHHHHhhccceeecccccchhhHHHHHhhcccch
Q 005126 156 RFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIY 235 (713)
Q Consensus 156 r~G~la~~~l~ll~l~~~Rn~~l~~l~g~~~~~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (713)
|.|+++....++..+|..||+.+.+++|++++.++.+|+|+|++++...++|+..+..+|...++..++.+.|..++..+
T Consensus 197 ~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H~w~~~~~~~~~~ih~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (646)
T KOG0039|consen 197 RLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLHIWLHLVNFFPFLVHGLEYTISLASELFFLPKTYKWLLLGVVG 276 (646)
T ss_pred HHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchhhhhhhcCCCc
Confidence 88888877777777999999999999999999999999999999999999999999887776554434456677777788
Q ss_pred hhHHHHHHHHHHHHHhcchHHHhhhhHHhHHHHHHHHHHHHHHhhhcC-----cchhhHHHHHHHHHHHHHHHHhhhccC
Q 005126 236 LAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAG-----DRHFYMVFGGIFLFGLDKLLRFIQSRP 310 (713)
Q Consensus 236 ~~G~ial~~~~~m~v~S~~~iRr~~YE~F~~~H~l~~v~~v~~~~H~~-----~~~~~~~~~~i~l~~~dR~~R~~r~~~ 310 (713)
++|+++++++++|+++|++++||+.||.|||+||+++++++++++|+. ..|+|++.| +++|++||++|+.|+..
T Consensus 277 ~tGv~~~i~~~im~v~s~~~fRR~~~e~F~ytH~l~~v~~illi~hg~~~~~~~~w~~~~~p-~~ly~~dR~~r~~r~~~ 355 (646)
T KOG0039|consen 277 LTGVILLILMLIMFVLSLPFFRRRFYEAFWYTHHLYIVFYILLIIHGGFRLLGTTWMYIAVP-VLLYILDRILRFLRSQK 355 (646)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999998 778888888 88999999999999988
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHH
Q 005126 311 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 390 (713)
Q Consensus 311 ~~~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~ 390 (713)
+++++++.++|+|+++|+++||++++|+||||+||+||+++.+|||||||+|+| +|++++++||+.||||++|++.+.
T Consensus 356 ~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~g~wT~~L~~~~~ 433 (646)
T KOG0039|consen 356 NVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKALGDWTEKLRNAFS 433 (646)
T ss_pred CceEEEEEEcCCCeEEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEecCcHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999 678999999999999999999987
Q ss_pred h-cccCCCCC-CcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCC----------CCCCceE
Q 005126 391 A-ELDSDADQ-MRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRK----------YRFPSKV 458 (713)
Q Consensus 391 ~-~~~~~~~~-~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~----------~~~~~~v 458 (713)
+ +.+.+.+. ....++.||||||++++++.+||+++||+||+|+||++|++++++++.+.++ ....+++
T Consensus 434 ~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (646)
T KOG0039|consen 434 EVSQPPESDKSYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKV 513 (646)
T ss_pred hhcccccccccccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecce
Confidence 3 22222121 1357899999999999999999999999999999999999999998754332 2356889
Q ss_pred EEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHH
Q 005126 459 QLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWM 538 (713)
Q Consensus 459 ~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~ 538 (713)
.++|.+|+..+++|++++..++.+.. ...-.+++.|+|+.-...+ .+.
T Consensus 514 ~F~Wv~~~~~sf~wf~~~l~~v~~~~-~~~~~e~~~~~t~~~~~~d-------------------------------~~~ 561 (646)
T KOG0039|consen 514 YFYWVTREQRSFEWFKGLLTEVEEYD-SSGVIELHNYVTSSYEEGD-------------------------------ARS 561 (646)
T ss_pred eEEEEeccccchHHHHHHHHHHHHHH-hcCCchhheehhHhHhhhh-------------------------------hhh
Confidence 99999999999999999888776543 2223677777776422110 000
Q ss_pred HHHHHHHHHHHHHHHHhhceEEecCCCCCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhh
Q 005126 539 AALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLK 618 (713)
Q Consensus 539 a~~~~~s~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (713)
+. +-+.+-+++. +
T Consensus 562 ~~---------~~~~~~~~~~----------------------------------------------------------~ 574 (646)
T KOG0039|consen 562 AL---------IQMVQKLLHA----------------------------------------------------------K 574 (646)
T ss_pred HH---------HHHHHhhccc----------------------------------------------------------c
Confidence 00 0011111110 0
Q ss_pred cCCCCCCcCCCcccccCCCccccccceecCCCChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHHhhhhhhhhccCC
Q 005126 619 KQTPPVSLNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNAN 698 (713)
Q Consensus 619 ~~~~~~s~~~~~~~~~~~~~~~~~~~h~g~RP~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c~~~~~~~~~~~~ 698 (713)
++.|. ..+..+ .+|+ |||||+++|+++++.|++.+||||+|||++|.++|++.|+++++
T Consensus 575 ~~~di----------~~g~~~---~~~~-gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~------- 633 (646)
T KOG0039|consen 575 NGVDI----------VTGLKV---ETHF-GRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSS------- 633 (646)
T ss_pred cCccc----------ccccee---eeeC-CCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhccc-------
Confidence 00000 112222 3676 69999999999999999988999999999999999999999774
Q ss_pred CCCCceeeeccCc
Q 005126 699 KDKPYFNFHSLNF 711 (713)
Q Consensus 699 ~~~~~f~fhs~sF 711 (713)
.++++|+||+|||
T Consensus 634 ~~~~~~~f~~E~F 646 (646)
T KOG0039|consen 634 STATRFEFHKENF 646 (646)
T ss_pred ccCceeeeeeccC
Confidence 3689999999998
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-38 Score=324.66 Aligned_cols=356 Identities=19% Similarity=0.230 Sum_probs=245.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHHHhh-CCCchhhHHHHHHHHHHHHHHHHHhhcccee-ecccccch---hhHHH
Q 005126 152 RVATRFGLLAEACLALLLLPILRGLSLFRLL-GIQFEASVRYHIWLGTAMIFFATIHGGSTLF-VWGVSHHI---QDEMW 226 (713)
Q Consensus 152 ~va~r~G~la~~~l~ll~l~~~Rn~~l~~l~-g~~~~~~~~~Hrwlg~~~~~~~~vH~i~~~~-~~~~~~~~---~~~~~ 226 (713)
...--.|.+|.+.|+++++++.|-+.+...+ |+ |..+.+|||.|.+++++.+.|-+.+.. .|....-+ .....
T Consensus 39 ~~~qf~g~iaL~~msl~~~LA~R~~~iE~~~~Gl--D~~Y~~HK~~sIlailL~l~H~~~~~~g~w~~~~~l~~k~a~v~ 116 (438)
T COG4097 39 EFSQFLGFIALALMSLIFLLATRLPLIEAWFNGL--DKIYRFHKYTSILAILLLLAHNFILFIGNWLTLQLLNFKPAPVK 116 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHhhhhhhh--hHHhHHHHHHHHHHHHHHHHHHHHHHcCcchhcccccccccccc
Confidence 4566788999999999999999999988665 65 999999999999999999999987433 44322000 00000
Q ss_pred HHhh--cccchhhHHHHHHHHHHHHHhcchHHHhhhhHHhHHHHHHHHHHHHHHhhhcCcc--hhh-------HHH---H
Q 005126 227 RWQK--TGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDR--HFY-------MVF---G 292 (713)
Q Consensus 227 ~~~~--~~~~~~~G~ial~~~~~m~v~S~~~iRr~~YE~F~~~H~l~~v~~v~~~~H~~~~--~~~-------~~~---~ 292 (713)
.|.. .+...-.|..+..+...|.+.+. ---+-.||.|.++|.++++.+++..+|.... ..+ |.. .
T Consensus 117 ~~l~~~~~s~~elG~~~~yi~~~lllV~~-l~~~i~Ye~WR~~H~lm~vvYilg~~H~~~l~~~~~~s~~a~swl~~~~a 195 (438)
T COG4097 117 PSLAGMWRSAKELGEWSAYIFIGLLLVWR-LWLNIGYENWRIAHRLMAVVYILGLLHSYGLLNYLYLSWPAVSWLVIAFA 195 (438)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHhcCchhHHHHHHHHHHHHHHHHHHHHHhcchhHhhccHHHHHHHHHH
Confidence 1100 00001234444444333333221 1235689999999999999999999997421 111 211 1
Q ss_pred HHHHHHHHH--HHHhhhccCc-eeEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCC-CCcceeeeeeeeCCCCCC
Q 005126 293 GIFLFGLDK--LLRFIQSRPE-TCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSI-SKFQWHSFSITSSSSVDD 368 (713)
Q Consensus 293 ~i~l~~~dR--~~R~~r~~~~-~~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~-s~~q~HPFTIaS~p~~~~ 368 (713)
.+++++.-+ ..+..++++. ..++..+..+.++++++.....++.|+||||.|+.++.. ++...|||||+++. +.
T Consensus 196 llG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~--~~ 273 (438)
T COG4097 196 LLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSH--EG 273 (438)
T ss_pred HHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEEeccccccCCCCCeeeeeCC--CC
Confidence 122222222 2233344443 344445566778899988877778899999999999864 35678999999885 34
Q ss_pred CcEEEEEEeCCchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCe-EEEEEecCChhhHHHHHHHHHHhh
Q 005126 369 QTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDS-LLLVAGGIGITPFLSILQEIASAQ 447 (713)
Q Consensus 369 ~~l~~~Ik~~G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~-vvlIAGGiGITP~lsil~~l~~~~ 447 (713)
.+++|.||+.||+|+.|+|.++ +|.++.||||||.+ +++++.+ -|+||||||||||+|+++.+..+.
T Consensus 274 sel~FsIK~LGD~Tk~l~dnLk----------~G~k~~vdGPYG~F--~~~~g~~~QVWIAGGIGITPFis~l~~l~~~~ 341 (438)
T COG4097 274 SELRFSIKALGDFTKTLKDNLK----------VGTKLEVDGPYGKF--DFERGLNTQVWIAGGIGITPFISMLFTLAERK 341 (438)
T ss_pred ceEEEEehhhhhhhHHHHHhcc----------CCceEEEecCccee--ecccCCcccEEEecCcCcchHHHHHHhhcccc
Confidence 5899999999999999999876 58899999999997 5566644 999999999999999999987642
Q ss_pred ccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCee
Q 005126 448 SNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNY 527 (713)
Q Consensus 448 ~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 527 (713)
..+.|+|+|++|+.+|..+.+|+....+ +.+++++|+--+++ .|.++.+.++...+......+
T Consensus 342 ------s~~~V~L~Y~~~n~e~~~y~~eLr~~~q----kl~~~~lHiiDSs~-------~g~l~~e~ler~~~~~~~~sv 404 (438)
T COG4097 342 ------SDPPVHLFYCSRNWEEALYAEELRALAQ----KLPNVVLHIIDSSK-------DGYLDQEDLERYPDRPRTRSV 404 (438)
T ss_pred ------cCCceEEEEEecCCchhHHHHHHHHHHh----cCCCeEEEEecCCC-------CCccCHHHhhccccccCcceE
Confidence 3578999999999999999888765332 34677777722222 233443322222111112489
Q ss_pred EEcCcchHHHHHHH
Q 005126 528 AVNGLESLIWMAAL 541 (713)
Q Consensus 528 ~vcGp~~~~~~a~~ 541 (713)
+.|||.+|+++...
T Consensus 405 ~fCGP~~m~dsL~r 418 (438)
T COG4097 405 FFCGPIKMMDSLRR 418 (438)
T ss_pred EEEcCHHHHHHHHH
Confidence 99999999998754
No 6
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.96 E-value=2.6e-28 Score=246.86 Aligned_cols=190 Identities=28% Similarity=0.483 Sum_probs=148.9
Q ss_pred EEEEEec-CCeEEEEEecCCCCccCCCeEEEEeCCCC-CCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHhc
Q 005126 315 LSARVFP-SKAIELILPKHAGLKFTPTSVIFMKIPSI-SKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAE 392 (713)
Q Consensus 315 vs~~~l~-~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~-s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~~ 392 (713)
++++.++ +++++++++.+..++++||||++|++|.. +.+++|||||+|+|.+++++++|+||..+|+|+++.+.+.+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 4567788 99999999988788999999999999988 788999999999986325899999999866666777665421
Q ss_pred ccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhh
Q 005126 393 LDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICL 472 (713)
Q Consensus 393 ~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~ 472 (713)
.+...+.++.|+||||.+..+..++++++|||||+||||++|+++++..+..+ ....++++|+|++|+.+++.|
T Consensus 82 ----~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~--~~~~~~v~l~w~~r~~~~~~~ 155 (210)
T cd06186 82 ----PGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK--TSRTRRVKLVWVVRDREDLEW 155 (210)
T ss_pred ----cCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc--cCCccEEEEEEEECCHHHhHH
Confidence 12235788999999998754567899999999999999999999999875321 123578999999999999877
Q ss_pred HHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHH
Q 005126 473 LNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 541 (713)
Q Consensus 473 ~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~ 541 (713)
+.+.+....+ . .... ++++|+|+ +++|||++|.+....
T Consensus 156 ~~~~l~~~~~-~-~~~~-~~~i~~T~----------------------------v~~CGp~~~~~~~~~ 193 (210)
T cd06186 156 FLDELRAAQE-L-EVDG-EIEIYVTR----------------------------VVVCGPPGLVDDVRN 193 (210)
T ss_pred HHHHHHhhhh-c-cCCc-eEEEEEee----------------------------EEEECchhhccHHHH
Confidence 7665432111 1 1111 78899997 789999998887644
No 7
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.95 E-value=1.8e-26 Score=235.92 Aligned_cols=205 Identities=17% Similarity=0.235 Sum_probs=160.9
Q ss_pred eEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHHHHHH
Q 005126 313 CILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIH 390 (713)
Q Consensus 313 ~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~~~~~ 390 (713)
++++++..+++++++++..+..++|+||||+.|.+|.. ++|||||+|.|. +++.++++||.. |.+|++|.+.++
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~l~ 77 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPH-EDGEIELHIRAVPGGSFSDYVFEELK 77 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCC-CCCeEEEEEEecCCCccHHHHHHhcc
Confidence 45677778999999999987778999999999999864 589999999885 467899999985 889999987554
Q ss_pred hcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 005126 391 AELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 470 (713)
Q Consensus 391 ~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l 470 (713)
+|.++.|+||||.+..+...+++++|||||+||||++++++++..+. ..++++|+|++|+.+++
T Consensus 78 ----------~G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~ 141 (224)
T cd06189 78 ----------ENGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG------SKRPIHLYWGARTEEDL 141 (224)
T ss_pred ----------CCCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhc
Confidence 57889999999987654445789999999999999999999998752 24679999999999999
Q ss_pred hhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 471 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 471 ~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+.+++.+ +.+ +..++++..+++++++.+.+.++++++....+ .....+..+|+|||++|++...-.
T Consensus 142 ~~~~~l~~-l~~---~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~-~~~~~~~~v~vCGp~~m~~~~~~~ 208 (224)
T cd06189 142 YLDELLEA-WAE---AHPNFTYVPVLSEPEEGWQGRTGLVHEAVLED-FPDLSDFDVYACGSPEMVYAARDD 208 (224)
T ss_pred cCHHHHHH-HHH---hCCCeEEEEEeCCCCcCCccccccHHHHHHhh-ccCccccEEEEECCHHHHHHHHHH
Confidence 88777654 332 23578888888887655555566665533222 222234679999999999876543
No 8
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.95 E-value=2.7e-26 Score=235.50 Aligned_cols=209 Identities=18% Similarity=0.207 Sum_probs=163.5
Q ss_pred eEEEEEEecCCeEEEEEecCCC--CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHHHH
Q 005126 313 CILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 388 (713)
Q Consensus 313 ~ivs~~~l~~~~v~l~l~~~~~--~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~~~ 388 (713)
++++.+.+++++.+++++.+.. ..++||||+.|.+|..+...+|||||+|.|. +++.++|+||.. |..|+.|.+.
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~ 80 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPS-RPDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCC-CCCcEEEEEEEcCCCcchHHHHhc
Confidence 4567777899999999988765 7899999999999866666789999999885 566799999986 8899988764
Q ss_pred HHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 005126 389 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 468 (713)
Q Consensus 389 ~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~ 468 (713)
++ .|..+.|+||||.+..+....++++|||||+||||++++++++.... ..++++++|++|+.+
T Consensus 81 ~~----------~G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~ 144 (231)
T cd06215 81 LK----------VGDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR------PDADIVFIHSARSPA 144 (231)
T ss_pred CC----------CCCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC------CCCcEEEEEecCChh
Confidence 33 57889999999997544334789999999999999999999987642 246799999999999
Q ss_pred hhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCC-ccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 469 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQS-SVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 469 ~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
++.+.+++.+ +.+ +..++++++++|++++. +.+..|++++..+.+......+..+|+|||++|+..+.-+
T Consensus 145 ~~~~~~~l~~-l~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~v~icGp~~m~~~~~~~ 215 (231)
T cd06215 145 DIIFADELEE-LAR---RHPNFRLHLILEQPAPGAWGGYRGRLNAELLALLVPDLKERTVFVCGPAGFMKAVKSL 215 (231)
T ss_pred hhhHHHHHHH-HHH---HCCCeEEEEEEccCCCCcccccCCcCCHHHHHHhcCCccCCeEEEECCHHHHHHHHHH
Confidence 9988777654 322 23478899999987653 5556677776554443333334689999999999887654
No 9
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.94 E-value=3.7e-26 Score=236.56 Aligned_cols=219 Identities=21% Similarity=0.277 Sum_probs=166.7
Q ss_pred HHHHHHhhhccC-----ceeEEEEEEecCCeEEEEEecCCC-CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEE
Q 005126 299 LDKLLRFIQSRP-----ETCILSARVFPSKAIELILPKHAG-LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMS 372 (713)
Q Consensus 299 ~dR~~R~~r~~~-----~~~ivs~~~l~~~~v~l~l~~~~~-~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~ 372 (713)
+||++|.++.-. ...+++.+.+++++.++++..+.. ..|+||||+.|.+|..+...+|||||+|.|..+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 588888876521 345677777889999999987654 48999999999997656667899999998731367899
Q ss_pred EEEEeC--CchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccC
Q 005126 373 LIVKCD--GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNR 450 (713)
Q Consensus 373 ~~Ik~~--G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~ 450 (713)
++||.. |..|+.|.+.++ +|+++.|+||||.+..+...++++++||||+||||++|+++++...+
T Consensus 82 ~~ik~~~~G~~s~~l~~~~~----------~Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~--- 148 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHLA----------PGDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG--- 148 (243)
T ss_pred EEEEEcCCCcchhHHHhcCC----------CCCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC---
Confidence 999997 889999986433 57889999999987654444789999999999999999999987652
Q ss_pred CCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEc
Q 005126 451 KYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVN 530 (713)
Q Consensus 451 ~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vc 530 (713)
..+++.++|++|+.+++.+.+++.+ +.+ +..++++++++|++ +..|++++....+.....++..+|+|
T Consensus 149 ---~~~~i~l~~~~r~~~~~~~~~el~~-l~~---~~~~~~~~~~~s~~-----~~~g~~~~~~l~~~~~~~~~~~vyvc 216 (243)
T cd06216 149 ---PTADVVLLYYARTREDVIFADELRA-LAA---QHPNLRLHLLYTRE-----ELDGRLSAAHLDAVVPDLADRQVYAC 216 (243)
T ss_pred ---CCCCEEEEEEcCChhhhHHHHHHHH-HHH---hCCCeEEEEEEcCC-----ccCCCCCHHHHHHhccCcccCeEEEE
Confidence 2478999999999999877777654 322 23478888888875 22345554444333332334689999
Q ss_pred CcchHHHHHHHH
Q 005126 531 GLESLIWMAALV 542 (713)
Q Consensus 531 Gp~~~~~~a~~~ 542 (713)
||++|+....-.
T Consensus 217 Gp~~m~~~~~~~ 228 (243)
T cd06216 217 GPPGFLDAAEEL 228 (243)
T ss_pred CCHHHHHHHHHH
Confidence 999999887654
No 10
>PRK08051 fre FMN reductase; Validated
Probab=99.94 E-value=1.1e-25 Score=231.41 Aligned_cols=206 Identities=16% Similarity=0.157 Sum_probs=157.1
Q ss_pred eeEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCC--chhHHHHHHH
Q 005126 312 TCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDG--EWTSSLYQMI 389 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G--~~T~~L~~~~ 389 (713)
.++.+++.+++++.++++..+.+++|+||||++|.+|.. +.|||||+|.|. +++.++|+||..+ ..+.++.+.+
T Consensus 5 ~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~-~~~~l~~~v~~~~~~~~~~~~~~~l 80 (232)
T PRK08051 5 CKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPR-EKGFIELHIGASELNLYAMAVMERI 80 (232)
T ss_pred EEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCC-CCCcEEEEEEEcCCCcchHHHHHHc
Confidence 456677778999999999877778999999999999753 679999999885 5678999999854 3566665544
Q ss_pred HhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcch
Q 005126 390 HAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 469 (713)
Q Consensus 390 ~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~ 469 (713)
+ +|.+|.|+||||.+..+....+++||||||+||||++++++++.... ..+++.++|++|+.++
T Consensus 81 ~----------~G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~------~~~~v~l~~g~r~~~~ 144 (232)
T PRK08051 81 L----------KDGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG------PNRPITLYWGGREEDH 144 (232)
T ss_pred C----------CCCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC------CCCcEEEEEEeccHHH
Confidence 3 57899999999987654445689999999999999999999998752 2467999999999999
Q ss_pred hhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 470 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 470 l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+.+.+++.+.. + +..+++++..++++++.+.+..|++.+... +......+..+|+|||++|++...-.
T Consensus 145 ~~~~~el~~l~-~---~~~~~~~~~~~~~~~~~~~~~~g~v~~~l~-~~~~~~~~~~vyicGp~~m~~~v~~~ 212 (232)
T PRK08051 145 LYDLDELEALA-L---KHPNLHFVPVVEQPEEGWQGKTGTVLTAVM-QDFGSLAEYDIYIAGRFEMAKIAREL 212 (232)
T ss_pred hhhhHHHHHHH-H---HCCCcEEEEEeCCCCCCcccceeeehHHHH-hhccCcccCEEEEECCHHHHHHHHHH
Confidence 98777776533 2 224788888777766655555666655332 22222234679999999999877543
No 11
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.94 E-value=1e-25 Score=232.14 Aligned_cols=207 Identities=18% Similarity=0.283 Sum_probs=158.1
Q ss_pred eeEEEEEEecCCeEEEEEecCCC------CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhH
Q 005126 312 TCILSARVFPSKAIELILPKHAG------LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTS 383 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~------~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~ 383 (713)
..+++.+..+++++++++..+.+ ..|+||||+.|.+|.. .++|||||+|.|. +++.++|+||.. |.+|+
T Consensus 4 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~-~~~~l~~~i~~~~~G~~s~ 80 (236)
T cd06210 4 AEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPN-WDGRLEFLIRLLPGGAFST 80 (236)
T ss_pred EEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--ccceecccCCCCC-CCCEEEEEEEEcCCCccch
Confidence 45677788899999999987654 7899999999999853 3689999999885 467899999974 77899
Q ss_pred HHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEE
Q 005126 384 SLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 463 (713)
Q Consensus 384 ~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~ 463 (713)
.|.+.++ +|.++.|+||||.+..+...+++++|||||+||||++++++++...+ ..++++|+|+
T Consensus 81 ~l~~~~~----------~Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~------~~~~v~l~~~ 144 (236)
T cd06210 81 YLETRAK----------VGQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG------EPQEARLFFG 144 (236)
T ss_pred hhhhCcC----------CCCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC------CCceEEEEEe
Confidence 8876433 57889999999997654445678999999999999999999987642 2367999999
Q ss_pred eCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHH
Q 005126 464 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 541 (713)
Q Consensus 464 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~ 541 (713)
+|+.+++.+.+++.+ +.+ +..+++++..++++++.+.+..|.+.+..............+|+|||++|+....-
T Consensus 145 ~r~~~~~~~~~~l~~-l~~---~~~~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l~~~~~~~~vyicGp~~m~~~~~~ 218 (236)
T cd06210 145 VNTEAELFYLDELKR-LAD---SLPNLTVRICVWRPGGEWEGYRGTVVDALREDLASSDAKPDIYLCGPPGMVDAAFA 218 (236)
T ss_pred cCCHHHhhhHHHHHH-HHH---hCCCeEEEEEEcCCCCCcCCccCcHHHHHHHhhcccCCCcEEEEeCCHHHHHHHHH
Confidence 999999988777654 332 22478898888886555545556555432222112223467999999999987754
No 12
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.94 E-value=1.1e-25 Score=231.31 Aligned_cols=206 Identities=17% Similarity=0.310 Sum_probs=156.9
Q ss_pred EEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHHHHHHhc
Q 005126 315 LSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIHAE 392 (713)
Q Consensus 315 vs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~~~~~~~ 392 (713)
++.+.+++++.++++..+..+.|+||||++|.+|+.+ ..|||||+|.|. +.+.++|+||.. |..|+.|.+.++
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~~~~~vk~~~~G~~s~~l~~~~~-- 76 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLAN-ASGEWEFIIKRKPGGAASNALFDNLE-- 76 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCC-CCCEEEEEEEEcCCCcchHHHhhcCC--
Confidence 3456678999999998777788999999999998754 679999999875 457899999985 889999987433
Q ss_pred ccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhh
Q 005126 393 LDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICL 472 (713)
Q Consensus 393 ~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~ 472 (713)
.+.++.|+||||.+..+....++++|||||+||||++++++++.... .....+++|+|++|+.+++.+
T Consensus 77 --------~g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~----~~~~~~v~l~~~~r~~~~~~~ 144 (232)
T cd06190 77 --------PGDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSP----YLSDRPVDLFYGGRTPSDLCA 144 (232)
T ss_pred --------CCCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcc----cCCCCeEEEEEeecCHHHHhh
Confidence 46789999999987654445689999999999999999999998642 113478999999999999988
Q ss_pred HHhHhHHhhhccCCCccEEEEEEEeCCCCC----ccchhhhccchhHHHHhcc-CCCCeeEEcCcchHHHHHHHH
Q 005126 473 LNSISPLLSNQQSKKWHLTLKVFVTQEEQS----SVTVREVLNDLSLVRAVRF-GTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 473 ~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~----~~~~~g~~~~~~~~~~~~~-~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+++.+ +.+ ...++++++.++++++. +.+.+|++++. +.+.... .++..+|+|||++|+..+.-.
T Consensus 145 ~~el~~-l~~---~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~-l~~~~~~~~~~~~vyiCGp~~m~~~v~~~ 214 (232)
T cd06190 145 LDELSA-LVA---LGARLRVTPAVSDAGSGSAAGWDGPTGFVHEV-VEATLGDRLAEFEFYFAGPPPMVDAVQRM 214 (232)
T ss_pred HHHHHH-HHH---hCCCEEEEEEeCCCCCCcCCCccCCcCcHHHH-HHhhccCCccccEEEEECCHHHHHHHHHH
Confidence 777654 332 23478888888876532 34455666542 2232222 345789999999999877543
No 13
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.94 E-value=1.6e-25 Score=230.40 Aligned_cols=211 Identities=18% Similarity=0.232 Sum_probs=161.5
Q ss_pred ceeEEEEEEecCCeEEEEEecCCC--CccCCCeEEEEeCCCC-CCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHH
Q 005126 311 ETCILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSI-SKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSL 385 (713)
Q Consensus 311 ~~~ivs~~~l~~~~v~l~l~~~~~--~~~~pGQ~v~L~~P~~-s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L 385 (713)
...+++.+.+++++.++++..+.. ..++||||+.|.+|.. +...+|||||+|.|. +++.++++||.. |..|+.|
T Consensus 3 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~-~~~~l~l~v~~~~~G~~s~~l 81 (235)
T cd06217 3 VLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPT-QRGRVELTVKRVPGGEVSPYL 81 (235)
T ss_pred eEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCC-CCCeEEEEEEEcCCCcchHHH
Confidence 346778888899999999987766 7899999999999743 344679999999885 556899999885 6689888
Q ss_pred HHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeC
Q 005126 386 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 465 (713)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r 465 (713)
.+.++ .|+++.|+||||.+..+....+++++||||+||||++++++++...+ ..++++++|++|
T Consensus 82 ~~~l~----------~Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~------~~~~i~l~~~~r 145 (235)
T cd06217 82 HDEVK----------VGDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG------WPVPFRLLYSAR 145 (235)
T ss_pred HhcCC----------CCCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC------CCceEEEEEecC
Confidence 76433 47889999999987543334689999999999999999999988752 246899999999
Q ss_pred CcchhhhHHhHhHHhhhccCCCccEEEEEEEeCC-CCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 466 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQE-EQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 466 ~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+.+++.+.+++.+... +..+++++.++|++ ++.+.+.+|++++..+.+.....++..+|+|||++|+....-+
T Consensus 146 ~~~~~~~~~el~~~~~----~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~v~icGp~~m~~~v~~~ 219 (235)
T cd06217 146 TAEDVIFRDELEQLAR----RHPNLHVTEALTRAAPADWLGPAGRITADLIAELVPPLAGRRVYVCGPPAFVEAATRL 219 (235)
T ss_pred CHHHhhHHHHHHHHHH----HCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCCccCCEEEEECCHHHHHHHHHH
Confidence 9999987777654322 22468888888987 3334445677776554443222345789999999999877543
No 14
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.94 E-value=3.3e-25 Score=225.54 Aligned_cols=204 Identities=19% Similarity=0.311 Sum_probs=157.4
Q ss_pred EEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHHHHHHhccc
Q 005126 317 ARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIHAELD 394 (713)
Q Consensus 317 ~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~~~~~~~~~ 394 (713)
++.+++++.++++..+...+|+||||+.|.+|..+...+|||||+|.|. +++.++++||.. |.+|+.|.+. +
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~~~l~vk~~~~G~~s~~l~~~-~---- 76 (223)
T cd00322 3 TEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPD-EEGELELTVKIVPGGPFSAWLHDL-K---- 76 (223)
T ss_pred eEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCC-CCCeEEEEEEEeCCCchhhHHhcC-C----
Confidence 4456789999999887677899999999999976567899999999885 457899999997 9999999764 1
Q ss_pred CCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHH
Q 005126 395 SDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLN 474 (713)
Q Consensus 395 ~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~ 474 (713)
.++++.++||+|.+..+...++++++||||+||||++++++++.... ..++++++|++|+.+++.+.+
T Consensus 77 ------~G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~ 144 (223)
T cd00322 77 ------PGDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK------PGGEITLLYGARTPADLLFLD 144 (223)
T ss_pred ------CCCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC------CCCcEEEEEecCCHHHhhHHH
Confidence 47889999999998545567789999999999999999999998752 247899999999999998888
Q ss_pred hHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccc-hhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 475 SISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLND-LSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 475 ~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
++.+... ...++++++++++++..+....+.+.. ..........++..+|+|||++|+....-.
T Consensus 145 el~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~~m~~~~~~~ 209 (223)
T cd00322 145 ELEELAK----EGPNFRLVLALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPPAMAKAVREA 209 (223)
T ss_pred HHHHHHH----hCCCeEEEEEecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECCHHHHHHHHHH
Confidence 8765332 235788888888876554333333321 111122222345789999999998877554
No 15
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.94 E-value=3.2e-25 Score=227.20 Aligned_cols=205 Identities=16% Similarity=0.292 Sum_probs=157.5
Q ss_pred eeEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHHHHH
Q 005126 312 TCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMI 389 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~~~~ 389 (713)
..+++.+.+++++.++++..++...|+||||+.|.+|... .+|||||+|+|. +++.++|+||.. |.+|+.|.+.+
T Consensus 3 ~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 3 GTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQ-GDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred EEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCC-CCCEEEEEEEECCCCcchHHHHhcC
Confidence 4567778889999999998876778999999999998643 689999999985 567899999975 88999997754
Q ss_pred HhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcch
Q 005126 390 HAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 469 (713)
Q Consensus 390 ~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~ 469 (713)
+ +|+++.|+||||.+..+ ...++++|||||+||||++++++++..++ ..++++++|++|+.+|
T Consensus 80 ~----------~G~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~------~~~~i~l~~~~r~~~~ 142 (227)
T cd06213 80 R----------TGERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAG------TKRDVTLLFGARTQRD 142 (227)
T ss_pred C----------CCCEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcC------CCCcEEEEEeeCCHHH
Confidence 3 47889999999997543 34579999999999999999999987642 2367999999999999
Q ss_pred hhhHHhHhHHhhhccCCCccEEEEEEEeCCCCC--ccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 470 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQS--SVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 470 l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+.+.+++.+.. +. ...+++++.+++++++. +.+.+|++++.. .+.. .++..+|+|||++|+.+..-.
T Consensus 143 ~~~~~~l~~l~-~~--~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l-~~~~--~~~~~v~~CGp~~~~~~~~~~ 211 (227)
T cd06213 143 LYALDEIAAIA-AR--WRGRFRFIPVLSEEPADSSWKGARGLVTEHI-AEVL--LAATEAYLCGPPAMIDAAIAV 211 (227)
T ss_pred hccHHHHHHHH-Hh--ccCCeEEEEEecCCCCCCCccCCcccHHHHH-Hhhc--cCCCEEEEECCHHHHHHHHHH
Confidence 98877765432 21 12478888888876432 334445554422 2222 345789999999999887543
No 16
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.93 E-value=3.3e-25 Score=226.31 Aligned_cols=205 Identities=17% Similarity=0.272 Sum_probs=157.4
Q ss_pred EEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHHHHHHhc
Q 005126 315 LSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIHAE 392 (713)
Q Consensus 315 vs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~~~~~~~ 392 (713)
++.+.+++++.++++..+....|+||||+.|.+|..+. ++|||||+|.|. +++.++++||.. |.+|+.|.+.++
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~-~~~~~~~~i~~~~~G~~s~~l~~~l~-- 77 (224)
T cd06187 2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPN-EDGEIEFHVRAVPGGRVSNALHDELK-- 77 (224)
T ss_pred eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCC-CCCEEEEEEEeCCCCcchHHHhhcCc--
Confidence 45566788999999987777899999999999986543 789999999875 457899999986 889999987433
Q ss_pred ccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhh
Q 005126 393 LDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICL 472 (713)
Q Consensus 393 ~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~ 472 (713)
+++.+.|+||||.+..+...++++++||||+||||++|+++++..++ ..+++.++|++|+.+++.+
T Consensus 78 --------~G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~------~~~~v~l~~~~~~~~~~~~ 143 (224)
T cd06187 78 --------VGDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG------EPRPVHLFFGARTERDLYD 143 (224)
T ss_pred --------cCCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhhcC
Confidence 47889999999987654444789999999999999999999988642 2468999999999999988
Q ss_pred HHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 473 LNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 473 ~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+++.. +.+ +..+++++++++++++.+.+.++.+.+.... .....++..+|+|||++|+....-.
T Consensus 144 ~~~l~~-~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~v~vcGp~~~~~~v~~~ 208 (224)
T cd06187 144 LEGLLA-LAA---RHPWLRVVPVVSHEEGAWTGRRGLVTDVVGR-DGPDWADHDIYICGPPAMVDATVDA 208 (224)
T ss_pred hHHHHH-HHH---hCCCeEEEEEeCCCCCccCCCcccHHHHHHH-hccccccCEEEEECCHHHHHHHHHH
Confidence 887764 322 2346788888887655444455655543322 1222234679999999999876543
No 17
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.93 E-value=4.6e-25 Score=226.69 Aligned_cols=207 Identities=21% Similarity=0.336 Sum_probs=156.4
Q ss_pred eeEEEEEEecCCeEEEEEecCC--CCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHHH
Q 005126 312 TCILSARVFPSKAIELILPKHA--GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQ 387 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~--~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~~ 387 (713)
..+++.+.+++++.++++..+. .++|+||||+.|.+|+.. ++|||||+|.|. +++.++++||.. |.+|+.|.+
T Consensus 3 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~l~l~vk~~~~G~~s~~l~~ 79 (232)
T cd06212 3 GTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPA-DPGRLEFIIKKYPGGLFSSFLDD 79 (232)
T ss_pred eEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCC-CCCEEEEEEEECCCCchhhHHhh
Confidence 4567788889999988886533 578999999999998643 789999999885 457899999985 778988876
Q ss_pred HHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc
Q 005126 388 MIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS 467 (713)
Q Consensus 388 ~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~ 467 (713)
.++ ++.++.++||||.+..+...+++++|||||+||||++++++++...+ ..++++|+|++|+.
T Consensus 80 ~l~----------~G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~ 143 (232)
T cd06212 80 GLA----------VGDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG------SDRPVRFFYGARTA 143 (232)
T ss_pred cCC----------CCCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC------CCCcEEEEEeccch
Confidence 433 47889999999988654445789999999999999999999998752 23679999999999
Q ss_pred chhhhHHhHhHHhhhccCCCccEEEEEEEeCCCC--CccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 468 QEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ--SSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 468 ~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+++.+.+++.. +.+ +..+++++..++++++ .+.+..|.+++. ..+.....++..+|+|||++|+....-.
T Consensus 144 ~~~~~~~~l~~-l~~---~~~~~~~~~~~s~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~v~~CGp~~~~~~v~~~ 215 (232)
T cd06212 144 RDLFYLEEIAA-LGE---KIPDFTFIPALSESPDDEGWSGETGLVTEV-VQRNEATLAGCDVYLCGPPPMIDAALPV 215 (232)
T ss_pred HHhccHHHHHH-HHH---hCCCEEEEEEECCCCCCCCCcCCcccHHHH-HHhhccCccCCEEEEECCHHHHHHHHHH
Confidence 99988777654 322 2347888888887653 233345555542 2222222235679999999999877543
No 18
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.93 E-value=4.1e-25 Score=228.06 Aligned_cols=208 Identities=16% Similarity=0.214 Sum_probs=158.2
Q ss_pred ceeEEEEEEecCCeEEEEEecCCC--CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHH
Q 005126 311 ETCILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLY 386 (713)
Q Consensus 311 ~~~ivs~~~l~~~~v~l~l~~~~~--~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~ 386 (713)
..++++.+.+++++.++++..+.+ ..|+||||+.|.+|... +.|||||+|.|. +++.++|+||.. |..|+.|.
T Consensus 8 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 8 EGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--GTRAFSIASSPS-DAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred eEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCC--CccccccCCCCC-CCCEEEEEEEECCCCcchhhHh
Confidence 356777888899999999887655 48999999999998643 679999999885 567899999986 88999997
Q ss_pred HHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 005126 387 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 466 (713)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~ 466 (713)
+.++ +|.++.|+||||.+..+-...+++++||||+||||++|+++++..++ ..++++|+|++|+
T Consensus 85 ~~l~----------~G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~------~~~~v~l~~~~r~ 148 (238)
T cd06211 85 KQLK----------EGDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERG------DTRKITLFFGART 148 (238)
T ss_pred hcCC----------CCCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcC------CCCcEEEEEecCC
Confidence 5433 57889999999987544344589999999999999999999988652 1367999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCC--CccchhhhccchhHHHHhc-cCCCCeeEEcCcchHHHHHHHH
Q 005126 467 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ--SSVTVREVLNDLSLVRAVR-FGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 467 ~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~--~~~~~~g~~~~~~~~~~~~-~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+++.+.+++.+ +.+ +..+++++..++++++ .+.+.+|++++. +.+... ..++..+|+|||++|++...-.
T Consensus 149 ~~~~~~~~~l~~-l~~---~~~~~~~~~~~s~~~~~~~~~~~~g~v~~~-l~~~~~~~~~~~~vyvCGp~~m~~~~~~~ 222 (238)
T cd06211 149 RAELYYLDEFEA-LEK---DHPNFKYVPALSREPPESNWKGFTGFVHDA-AKKHFKNDFRGHKAYLCGPPPMIDACIKT 222 (238)
T ss_pred hhhhccHHHHHH-HHH---hCCCeEEEEEECCCCCCcCcccccCcHHHH-HHHhcccccccCEEEEECCHHHHHHHHHH
Confidence 999977777654 332 2246888888887643 333456666652 222222 2235689999999999887654
No 19
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.93 E-value=5.1e-25 Score=226.20 Aligned_cols=207 Identities=19% Similarity=0.223 Sum_probs=154.8
Q ss_pred eEEEEEEecCCeEEEEEecCCC--CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHHHH
Q 005126 313 CILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 388 (713)
Q Consensus 313 ~ivs~~~l~~~~v~l~l~~~~~--~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~~~ 388 (713)
++++++.+++++.++++..+.. +.|+||||+.|.++..+...+|||||+|.|. ++.+++.||.. |..|+.|.+.
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~~G~~s~~l~~~ 79 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVPGGRVSNYLREH 79 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECCCCccchHHHhc
Confidence 3566777889999888876543 5899999999998755555789999999874 57899999986 8899999864
Q ss_pred HHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 005126 389 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 468 (713)
Q Consensus 389 ~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~ 468 (713)
++ +|+++.|+||||.+..+....++++|||||+||||++|+++++.... ..++++++|++|+.+
T Consensus 80 ~~----------~Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~------~~~~v~l~~~~r~~~ 143 (231)
T cd06191 80 IQ----------PGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA------PESDFTLIHSARTPA 143 (231)
T ss_pred CC----------CCCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEecCCHH
Confidence 33 57889999999987554445689999999999999999999987642 236899999999999
Q ss_pred hhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCc--cchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHH
Q 005126 469 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS--VTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 541 (713)
Q Consensus 469 ~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~ 541 (713)
++.+.+++.+ +.+ +..+++++.++|+++... .+.++.+.+...........+..+|+|||++|+..+.-
T Consensus 144 ~~~~~~el~~-l~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vyicGp~~mv~~~~~ 214 (231)
T cd06191 144 DMIFAQELRE-LAD---KPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAALIPDRLEREAFICGPAGMMDAVET 214 (231)
T ss_pred HHhHHHHHHH-HHH---hCCCeEEEEEECCCCCCccccCCcccccHHHHHHhCccccCCeEEEECCHHHHHHHHH
Confidence 9988777654 322 235899999999875432 22333333222222222223468999999999987654
No 20
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.93 E-value=1.1e-24 Score=226.01 Aligned_cols=210 Identities=17% Similarity=0.219 Sum_probs=160.6
Q ss_pred CceeEEEEEEecCCeEEEEEecCCC---CccCCCeEEEEeCCCCC--CcceeeeeeeeCCCCCCCcEEEEEEeC--Cchh
Q 005126 310 PETCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSIS--KFQWHSFSITSSSSVDDQTMSLIVKCD--GEWT 382 (713)
Q Consensus 310 ~~~~ivs~~~l~~~~v~l~l~~~~~---~~~~pGQ~v~L~~P~~s--~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T 382 (713)
+...+++.+.+++++.++++..+.. +.|+||||+.|.+|..+ ...+|||||+|.|. ++.++|+||.. |..|
T Consensus 7 ~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~l~~~ik~~~~G~~s 84 (247)
T cd06184 7 RPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPN--GDYYRISVKREPGGLVS 84 (247)
T ss_pred EEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCC--CCeEEEEEEEcCCCcch
Confidence 3456777888899999999987643 68999999999986433 45889999999874 34899999987 9999
Q ss_pred HHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEE
Q 005126 383 SSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIY 462 (713)
Q Consensus 383 ~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw 462 (713)
+.|.+.++ +|+++.|+||||.+..+...+++++|||||+||||++++++++..+. ..++++|+|
T Consensus 85 ~~l~~~~~----------~Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~------~~~~i~l~~ 148 (247)
T cd06184 85 NYLHDNVK----------VGDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG------PGRPVTFIH 148 (247)
T ss_pred HHHHhcCC----------CCCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC------CCCcEEEEE
Confidence 99877432 57899999999997655446789999999999999999999998642 247899999
Q ss_pred EeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCc----cchhhhccchhHHHHhccCCCCeeEEcCcchHHHH
Q 005126 463 VIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS----VTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWM 538 (713)
Q Consensus 463 ~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~ 538 (713)
++|+.+++.+.+++.... + +..+++++++++++.+.+ ....|+++...+.+ ....++..+|+|||++|+..
T Consensus 149 ~~r~~~~~~~~~~l~~l~-~---~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~v~icGp~~m~~~ 223 (247)
T cd06184 149 AARNSAVHAFRDELEELA-A---RLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLRE-LLLPADADFYLCGPVPFMQA 223 (247)
T ss_pred EcCchhhHHHHHHHHHHH-h---hCCCeEEEEEECCCCcccccccccccCccCHHHHhh-ccCCCCCEEEEECCHHHHHH
Confidence 999999988777765432 2 235889999999875432 23456666543333 12234578999999999987
Q ss_pred HHHH
Q 005126 539 AALV 542 (713)
Q Consensus 539 a~~~ 542 (713)
..-.
T Consensus 224 v~~~ 227 (247)
T cd06184 224 VREG 227 (247)
T ss_pred HHHH
Confidence 6543
No 21
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.93 E-value=7.8e-25 Score=223.43 Aligned_cols=201 Identities=15% Similarity=0.211 Sum_probs=151.7
Q ss_pred EEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHHHHHHhc
Q 005126 315 LSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIHAE 392 (713)
Q Consensus 315 vs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~~~~~~~ 392 (713)
++++.+++++++++++.+..++|+||||+.|++|.. ..|||||+|.|. +++.++++||.. |.+|+.|.+.++
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~-~~~~~~~~i~~~~~G~~s~~l~~~~~-- 75 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPD-GDNELEFHIRRKPNGAFSGWLGEEAR-- 75 (222)
T ss_pred ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCC-CCCEEEEEEEeccCCccchHHHhccC--
Confidence 355667899999999987788999999999999863 569999999985 447899999984 778999887543
Q ss_pred ccCCCCCCcceeEEEECCCCCCCCCc-CCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhh
Q 005126 393 LDSDADQMRCIPVAIEGPYGPATMDF-LRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEIC 471 (713)
Q Consensus 393 ~~~~~~~~~~~~v~VeGPYG~~~~~~-~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~ 471 (713)
.|+++.|+||||.+.... ..++++++||||+||||+++++++++.+. ..++++++|++|+.+++.
T Consensus 76 --------~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~ 141 (222)
T cd06194 76 --------PGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG------HQGEIRLVHGARDPDDLY 141 (222)
T ss_pred --------CCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC------CCccEEEEEecCChhhcc
Confidence 578899999999875432 45689999999999999999999987642 247799999999999998
Q ss_pred hHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 472 LLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 472 ~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+.+++.+ +.+ +..+++++..++++++.+.. ....+. ........+...+|+|||++|++.+.-.
T Consensus 142 ~~~el~~-l~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~vyicGp~~m~~~~~~~ 205 (222)
T cd06194 142 LHPALLW-LAR---EHPNFRYIPCVSEGSQGDPR--VRAGRI-AAHLPPLTRDDVVYLCGAPSMVNAVRRR 205 (222)
T ss_pred CHHHHHH-HHH---HCCCeEEEEEEccCCCCCcc--cccchh-hhhhccccCCCEEEEeCCHHHHHHHHHH
Confidence 7777654 332 23478888888886543211 111111 1111122335789999999999987654
No 22
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.93 E-value=6.7e-25 Score=226.89 Aligned_cols=206 Identities=19% Similarity=0.303 Sum_probs=157.7
Q ss_pred EEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCC-CCcceeeeeeeeCCCCCCCcEEEEEEe--CCchhHHHHHHHH
Q 005126 314 ILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSI-SKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLYQMIH 390 (713)
Q Consensus 314 ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~-s~~q~HPFTIaS~p~~~~~~l~~~Ik~--~G~~T~~L~~~~~ 390 (713)
+++.+.+++++++++++.+....|+||||+.|.+|.. +...+|||||+|.|. ++.++|+||. .|..|+.|.+. +
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~--~~~i~~~i~~~~~G~~s~~l~~l-~ 78 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPY--EENLEFYIILVPDGPLTPRLFKL-K 78 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCC--CCeEEEEEEEecCCCCchHHhcC-C
Confidence 4567778899999999887778899999999999875 667889999999874 3789999986 48999988642 2
Q ss_pred hcccCCCCCCcceeEEEE-CCCCCCCCCcC-CCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 005126 391 AELDSDADQMRCIPVAIE-GPYGPATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 468 (713)
Q Consensus 391 ~~~~~~~~~~~~~~v~Ve-GPYG~~~~~~~-~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~ 468 (713)
.|.++.++ ||+|.+..+.. ..++++|||||+||||++++++++.... ..++++|+|++|+.+
T Consensus 79 ----------~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~------~~~~v~l~~~~r~~~ 142 (241)
T cd06195 79 ----------PGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE------RFDKIVLVHGVRYAE 142 (241)
T ss_pred ----------CCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC------CCCcEEEEEccCCHH
Confidence 47889999 99999764433 4689999999999999999999987542 246899999999999
Q ss_pred hhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhH----HHHhcc---CCCCeeEEcCcchHHHHHHH
Q 005126 469 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSL----VRAVRF---GTQSNYAVNGLESLIWMAAL 541 (713)
Q Consensus 469 ~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~----~~~~~~---~~~~~~~vcGp~~~~~~a~~ 541 (713)
|+.+.+++.+...+ ...+++++.++|++++.+ +..|++++... .+.+.. .+...+|+|||++|++...-
T Consensus 143 d~~~~~el~~l~~~---~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~ 218 (241)
T cd06195 143 ELAYQDEIEALAKQ---YNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQE 218 (241)
T ss_pred HhhhHHHHHHHHhh---cCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHH
Confidence 99887777653321 134788999999877654 34455554322 111111 13467999999999987754
Q ss_pred H
Q 005126 542 V 542 (713)
Q Consensus 542 ~ 542 (713)
.
T Consensus 219 ~ 219 (241)
T cd06195 219 L 219 (241)
T ss_pred H
Confidence 3
No 23
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.93 E-value=1.1e-24 Score=221.43 Aligned_cols=191 Identities=23% Similarity=0.358 Sum_probs=142.4
Q ss_pred CCeEEEEEecCCC-CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHhcccCCCCCC
Q 005126 322 SKAIELILPKHAG-LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQM 400 (713)
Q Consensus 322 ~~~v~l~l~~~~~-~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~~~~~~~~~~ 400 (713)
.++.++++..+.+ ..|+||||+.|.+|..+..++|||||+|.|. +++.++|+||..|++|+.|.+.++
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~l~l~vk~~G~~t~~l~~~l~---------- 75 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPD-PDGRLRFTIKALGDYTRRLAERLK---------- 75 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCC-CCCeEEEEEEeCChHHHHHHHhCC----------
Confidence 4566777766554 7899999999999876667899999999875 557899999999999999985543
Q ss_pred cceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHh
Q 005126 401 RCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLL 480 (713)
Q Consensus 401 ~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l 480 (713)
.++++.|+||||.+..+.. +++++|||||+||||++|+++++..+. ..++++++|++|+.+++.+.+++.+..
T Consensus 76 ~G~~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~~l~~l~ 148 (216)
T cd06198 76 PGTRVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG------DARPVTLFYCVRDPEDAVFLDELRALA 148 (216)
T ss_pred CCCEEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC------CCceEEEEEEECCHHHhhhHHHHHHHH
Confidence 4788999999999765433 789999999999999999999988652 246899999999999988877775432
Q ss_pred hhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHH
Q 005126 481 SNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 541 (713)
Q Consensus 481 ~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~ 541 (713)
+ +. ++++++..+++++ +....+.+ .+.....++..+|+|||++|++.+.-
T Consensus 149 -~---~~-~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~vyicGp~~m~~~v~~ 198 (216)
T cd06198 149 -A---AA-GVVLHVIDSPSDG-RLTLEQLV-----RALVPDLADADVWFCGPPGMADALEK 198 (216)
T ss_pred -H---hc-CeEEEEEeCCCCc-ccchhhhh-----hhcCCCcCCCeEEEECcHHHHHHHHH
Confidence 2 12 5666665554322 21111111 11112223468999999999987754
No 24
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.93 E-value=1.2e-24 Score=222.93 Aligned_cols=204 Identities=18% Similarity=0.311 Sum_probs=157.0
Q ss_pred eeEEEEEEecCCeEEEEEecCC--CCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHHH
Q 005126 312 TCILSARVFPSKAIELILPKHA--GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQ 387 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~--~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~~ 387 (713)
..+++.+.+++++.+++++.+. ...|+||||+.|++|... ++|||||+|.|. + +.++|+||.. |..|+.|.+
T Consensus 4 ~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ysi~s~~~-~-~~i~~~i~~~~~G~~s~~l~~ 79 (228)
T cd06209 4 ATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTD--ETRSYSFSSAPG-D-PRLEFLIRLLPGGAMSSYLRD 79 (228)
T ss_pred EEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCC--cccccccccCCC-C-CeEEEEEEEcCCCcchhhHHh
Confidence 4567788889999999998765 578999999999998643 689999999875 3 7899999974 778999887
Q ss_pred HHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc
Q 005126 388 MIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS 467 (713)
Q Consensus 388 ~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~ 467 (713)
.++ .|.++.|+||+|.+..+ ...++++|||||+||||++|+++++.... ..++++|+|++|+.
T Consensus 80 ~l~----------~G~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~------~~~~v~l~~~~r~~ 142 (228)
T cd06209 80 RAQ----------PGDRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG------SAHPVHLVYGVTRD 142 (228)
T ss_pred ccC----------CCCEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC------CCCcEEEEEecCCH
Confidence 433 57889999999987543 33478999999999999999999988652 24689999999999
Q ss_pred chhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 468 QEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 468 ~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+++.+.+++.+.. + +..+++++.+++++++ +.+.+|++++....+.. ...+..+|+|||++|++...-.
T Consensus 143 ~~~~~~~~l~~l~-~---~~~~~~~~~~~s~~~~-~~~~~g~v~~~~~~~~~-~~~~~~v~icGp~~m~~~~~~~ 211 (228)
T cd06209 143 ADLVELDRLEALA-E---RLPGFSFRTVVADPDS-WHPRKGYVTDHLEAEDL-NDGDVDVYLCGPPPMVDAVRSW 211 (228)
T ss_pred HHhccHHHHHHHH-H---hCCCeEEEEEEcCCCc-cCCCcCCccHHHHHhhc-cCCCcEEEEeCCHHHHHHHHHH
Confidence 9998877776532 2 2347899999998655 44455666543322222 1234579999999999887553
No 25
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.93 E-value=8.5e-25 Score=237.31 Aligned_cols=206 Identities=17% Similarity=0.306 Sum_probs=160.8
Q ss_pred eeEEEEEEecCCeEEEEEecC---CCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEe--CCchhHHHH
Q 005126 312 TCILSARVFPSKAIELILPKH---AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLY 386 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~---~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~--~G~~T~~L~ 386 (713)
..+++.+.+++++.++++..+ +.+.|+||||+.|.+|... .+|||||+|.|. +++.++|+||. .|..|+.|+
T Consensus 109 ~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySias~p~-~~~~l~~~ik~~~~G~~s~~L~ 185 (340)
T PRK11872 109 GVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTD--DWRSYSFANRPN-ATNQLQFLIRLLPDGVMSNYLR 185 (340)
T ss_pred EEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCC--ceeecccCCCCC-CCCeEEEEEEECCCCcchhhHh
Confidence 567788888999988888765 4678999999999998642 589999999885 56789999998 566788887
Q ss_pred HHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 005126 387 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 466 (713)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~ 466 (713)
+.++ +|.++.|+||||.+..+ ...++++|||||+||||++|+++++..++ ..++++|+|++|+
T Consensus 186 ~~l~----------~G~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~------~~~~v~l~~g~r~ 248 (340)
T PRK11872 186 ERCQ----------VGDEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQG------CSPPVHLYYGVRH 248 (340)
T ss_pred hCCC----------CCCEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcC------CCCcEEEEEecCC
Confidence 6433 57899999999998644 33579999999999999999999998642 2367999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 467 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 467 ~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+|+.+.+++.+. .+ +..+++++..++++++.+.+..|++++....+.+ ...+..+|+|||++|+..+.-.
T Consensus 249 ~~dl~~~~el~~~-~~---~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~l-~~~~~~vy~CGp~~mv~~~~~~ 319 (340)
T PRK11872 249 AADLCELQRLAAY-AE---RLPNFRYHPVVSKASADWQGKRGYIHEHFDKAQL-RDQAFDMYLCGPPPMVEAVKQW 319 (340)
T ss_pred hHHhccHHHHHHH-HH---HCCCcEEEEEEeCCCCcCCCceeeccHHHHHhhc-CcCCCEEEEeCCHHHHHHHHHH
Confidence 9999888887653 22 2347888888888766666667777764433322 1123579999999999987654
No 26
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.93 E-value=1.4e-24 Score=226.08 Aligned_cols=202 Identities=18% Similarity=0.288 Sum_probs=149.1
Q ss_pred EEEEEecCCeEEEEEecCC----CCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHH
Q 005126 315 LSARVFPSKAIELILPKHA----GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 390 (713)
Q Consensus 315 vs~~~l~~~~v~l~l~~~~----~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~ 390 (713)
.+++.+++++.++++..++ .++|+||||+.|.+|..+ .|||||+|.|. +++.++|+||..|.+|+.|.+. +
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~-~~~~l~~~Ik~~G~~S~~L~~l-~ 76 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPT-RRGPLELTIRRVGRVTEALHEL-K 76 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCC-CCCeEEEEEEeCChhhHHHHcC-C
Confidence 3455667766555555433 378999999999998653 39999999985 5678999999999999988642 2
Q ss_pred hcccCCCCCCcceeEEEECCCCCCC-CCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcch
Q 005126 391 AELDSDADQMRCIPVAIEGPYGPAT-MDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 469 (713)
Q Consensus 391 ~~~~~~~~~~~~~~v~VeGPYG~~~-~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~ 469 (713)
.|.++.++||||.+. .+...++++|+||||+||||++|+++++.++. ...++++|+|++|+.++
T Consensus 77 ----------~G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~-----~~~~~i~Li~~~r~~~~ 141 (253)
T cd06221 77 ----------PGDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNR-----EDYGKVTLLYGARTPED 141 (253)
T ss_pred ----------CCCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhcc-----ccCCcEEEEEecCChHH
Confidence 477899999999843 22225789999999999999999999998742 12478999999999999
Q ss_pred hhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 470 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 470 l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+.+.+++.+.. + + .+++++++++++++.+....+++++.. .+.....++..+|+|||++|++...-.
T Consensus 142 ~~~~~~L~~l~-~---~-~~~~~~~~~s~~~~~~~~~~g~v~~~l-~~~~~~~~~~~vyicGp~~mv~~~~~~ 208 (253)
T cd06221 142 LLFKEELKEWA-K---R-SDVEVILTVDRAEEGWTGNVGLVTDLL-PELTLDPDNTVAIVCGPPIMMRFVAKE 208 (253)
T ss_pred cchHHHHHHHH-h---c-CCeEEEEEeCCCCCCccCCccccchhH-HhcCCCcCCcEEEEECCHHHHHHHHHH
Confidence 98877766432 2 2 468888888876654444456665422 222222245789999999999876543
No 27
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.93 E-value=2.1e-24 Score=220.21 Aligned_cols=182 Identities=19% Similarity=0.308 Sum_probs=138.7
Q ss_pred EEEecCCeEEEEEecCCC---CccCCCeEEEEeCCCC----------------CCcceeeeeeeeCCCCC--CCcEEEEE
Q 005126 317 ARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSI----------------SKFQWHSFSITSSSSVD--DQTMSLIV 375 (713)
Q Consensus 317 ~~~l~~~~v~l~l~~~~~---~~~~pGQ~v~L~~P~~----------------s~~q~HPFTIaS~p~~~--~~~l~~~I 375 (713)
.+.+++++.++++..+.+ +.|+||||+.|.+|.. +...+|||||+|.|.++ .+.++++|
T Consensus 3 ~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~v 82 (220)
T cd06197 3 SEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITV 82 (220)
T ss_pred ceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEE
Confidence 345688898998887766 8999999999999853 11356889999998643 27899999
Q ss_pred EeCCchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCc---CCCCeEEEEEecCChhhHHHHHHHHHHhhccCCC
Q 005126 376 KCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF---LRYDSLLLVAGGIGITPFLSILQEIASAQSNRKY 452 (713)
Q Consensus 376 k~~G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~---~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~ 452 (713)
|..|++|++|++..... ...+..+.++||||.+..+. ..+++++|||||+||||++++++++....
T Consensus 83 k~~G~~T~~L~~~~~~~------~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~----- 151 (220)
T cd06197 83 RKKGPVTGFLFQVARRL------REQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSR----- 151 (220)
T ss_pred EeCCCCCHHHHHhhhcc------cCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcc-----
Confidence 99999999999876411 12368899999999886543 35789999999999999999999988642
Q ss_pred CCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCc
Q 005126 453 RFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGL 532 (713)
Q Consensus 453 ~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp 532 (713)
...++++|+|++|+.+++.+.+++.+ .. + ...+.+.+.|+ .+|+|||
T Consensus 152 ~~~~~v~l~~~~r~~~~~~~~~el~~-~~----~-~~~~~~~~~~~---------------------------~v~~CGP 198 (220)
T cd06197 152 NTTWDITLLWSLREDDLPLVMDTLVR-FP----G-LPVSTTLFITS---------------------------EVYLCGP 198 (220)
T ss_pred cCCCcEEEEEEecchhhHHHHHHHHh-cc----C-CceEEEEEEec---------------------------cEEEECc
Confidence 12468999999999999888777633 11 1 12333333331 6899999
Q ss_pred chHHHHHHHH
Q 005126 533 ESLIWMAALV 542 (713)
Q Consensus 533 ~~~~~~a~~~ 542 (713)
++|+.++.-.
T Consensus 199 ~~m~~~~~~~ 208 (220)
T cd06197 199 PALEKAVLEW 208 (220)
T ss_pred HHHHHHHHHH
Confidence 9999977553
No 28
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.93 E-value=1.5e-24 Score=235.53 Aligned_cols=207 Identities=14% Similarity=0.184 Sum_probs=156.9
Q ss_pred ceeEEEEEEecCCeEEEEEecC--CCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEe--CCchhHHHH
Q 005126 311 ETCILSARVFPSKAIELILPKH--AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLY 386 (713)
Q Consensus 311 ~~~ivs~~~l~~~~v~l~l~~~--~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~--~G~~T~~L~ 386 (713)
...+++.+.+++++.++++..+ ..+.|+||||+.|.+|.. ++|||||+|.|. +++.++|+||. .|..|+.|+
T Consensus 104 ~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~-~~~~l~~~ik~~~~G~~s~~l~ 179 (339)
T PRK07609 104 PCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPH-SGGPLELHIRHMPGGVFTDHVF 179 (339)
T ss_pred EEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCC-CCCEEEEEEEecCCCccHHHHH
Confidence 3566777778899999999765 357899999999999863 589999999985 55789999986 588899998
Q ss_pred HHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 005126 387 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 466 (713)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~ 466 (713)
+.++ .|+.+.++||||.+..+....++++|||||+||||++|+++++...+ ..++++|+|++|+
T Consensus 180 ~~l~----------~G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~------~~~~i~l~~g~r~ 243 (339)
T PRK07609 180 GALK----------ERDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG------IQRPVTLYWGARR 243 (339)
T ss_pred Hhcc----------CCCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC------CCCcEEEEEecCC
Confidence 7544 57789999999998654446689999999999999999999998752 2367999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCccEEEEEEEeCCC--CCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 467 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 467 ~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+|+.+.+++. .+.+ +..+++++..+++++ +.+.+.+|++++....+ ....++..+|+|||++|++.+.-.
T Consensus 244 ~~dl~~~e~l~-~~~~---~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~-~~~~~~~~vy~CGp~~m~~~~~~~ 316 (339)
T PRK07609 244 PEDLYLSALAE-QWAE---ELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLED-FPDLSGHQVYACGSPVMVYAARDD 316 (339)
T ss_pred hHHhccHHHHH-HHHH---hCCCeEEEEEecCCCCCCCccCccCcHHHHHHhh-cccccCCEEEEECCHHHHHHHHHH
Confidence 99985544443 3332 234788888899853 33344556666543322 222234689999999999877543
No 29
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.93 E-value=1.3e-24 Score=230.26 Aligned_cols=209 Identities=14% Similarity=0.241 Sum_probs=157.9
Q ss_pred eeEEEEEEecCCeEEEEEecCCC--CccCCCeEEEEeCCCC-----------------------------CCcceeeeee
Q 005126 312 TCILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSI-----------------------------SKFQWHSFSI 360 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~--~~~~pGQ~v~L~~P~~-----------------------------s~~q~HPFTI 360 (713)
..+++.+.+.+++.++++..+.+ +.|+||||+.|.+|.. +....|||||
T Consensus 12 ~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySi 91 (283)
T cd06188 12 CTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAYSL 91 (283)
T ss_pred EEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccccccCc
Confidence 45667777788999999987655 6899999999999853 1223599999
Q ss_pred eeCCCCCCCcEEEEEEe-----------CCchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEe
Q 005126 361 TSSSSVDDQTMSLIVKC-----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAG 429 (713)
Q Consensus 361 aS~p~~~~~~l~~~Ik~-----------~G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAG 429 (713)
+|+|. +++.++|+||. .|..|+.|.+ ++ .|.++.|+||+|.+..+ ...+++|||||
T Consensus 92 as~p~-~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~i~gP~G~f~l~-~~~~~~vlIAg 158 (283)
T cd06188 92 ANYPA-EEGELKLNVRIATPPPGNSDIPPGIGSSYIFN-LK----------PGDKVTASGPFGEFFIK-DTDREMVFIGG 158 (283)
T ss_pred CCCCC-CCCeEEEEEEEeccCCccCCCCCceehhHHhc-CC----------CCCEEEEECcccccccc-CCCCcEEEEEe
Confidence 99985 56789999996 6778988876 32 57899999999998654 35679999999
Q ss_pred cCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCC--CCccchh
Q 005126 430 GIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTVR 507 (713)
Q Consensus 430 GiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~--~~~~~~~ 507 (713)
|+||||++|++++++.... ..++++|+|++|+.+++.+.+++.+.. + +..++++++.+|+++ +.+.+.+
T Consensus 159 GtGItP~~s~l~~~~~~~~-----~~~~v~l~~g~r~~~d~~~~~el~~l~-~---~~~~~~~~~~~s~~~~~~~~~~~~ 229 (283)
T cd06188 159 GAGMAPLRSHIFHLLKTLK-----SKRKISFWYGARSLKELFYQEEFEALE-K---EFPNFKYHPVLSEPQPEDNWDGYT 229 (283)
T ss_pred cccHhHHHHHHHHHHhcCC-----CCceEEEEEecCCHHHhhHHHHHHHHH-H---HCCCeEEEEEECCCCccCCCCCcc
Confidence 9999999999999876421 136899999999999998888875432 2 234688888888764 3344456
Q ss_pred hhccchhHHHHhcc---CCCCeeEEcCcchHHHHHHHH
Q 005126 508 EVLNDLSLVRAVRF---GTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 508 g~~~~~~~~~~~~~---~~~~~~~vcGp~~~~~~a~~~ 542 (713)
|++++....+.... ..+..+|+|||++|+..+.-.
T Consensus 230 G~v~~~~~~~~~~~~~~~~~~~vyiCGP~~m~~~~~~~ 267 (283)
T cd06188 230 GFIHQVLLENYLKKHPAPEDIEFYLCGPPPMNSAVIKM 267 (283)
T ss_pred eeecHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHH
Confidence 77776554443321 224579999999999987554
No 30
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.93 E-value=2e-24 Score=233.79 Aligned_cols=209 Identities=16% Similarity=0.156 Sum_probs=158.6
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHHHH
Q 005126 311 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 388 (713)
Q Consensus 311 ~~~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~~~ 388 (713)
...+++.+...+++..+++..+..+.|+||||+.|.+|.. ...+|||||+|.|. +++.++|+||.. |..|+.|++.
T Consensus 11 ~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~-~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 11 RMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPG-VSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCC-CCCcEEEEEEEcCCCcchhHHHhc
Confidence 3456777778899999999876678999999999999853 33579999999885 557899999984 7789999865
Q ss_pred HHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 005126 389 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 468 (713)
Q Consensus 389 ~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~ 468 (713)
++ .|+++.+.||+|.+..+....++++|||||+||||++|+++++...+ ..++++|+|++|+.+
T Consensus 89 l~----------~Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~------~~~~v~l~y~~r~~~ 152 (332)
T PRK10684 89 VK----------RGDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR------PQADVQVIFNVRTPQ 152 (332)
T ss_pred CC----------CCCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC------CCCCEEEEEeCCChH
Confidence 43 57899999999998654445678999999999999999999987642 236899999999999
Q ss_pred hhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 469 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 469 ~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
++.+.+++.+.. + +..++++++..+++. .....+|++++..+.+......+..+|+|||++|++...-.
T Consensus 153 ~~~~~~el~~l~-~---~~~~~~~~~~~~~~~-~~~~~~grl~~~~l~~~~~~~~~~~vyiCGP~~m~~~v~~~ 221 (332)
T PRK10684 153 DVIFADEWRQLK-Q---RYPQLNLTLVAENNA-TEGFIAGRLTRELLQQAVPDLASRTVMTCGPAPYMDWVEQE 221 (332)
T ss_pred HhhhHHHHHHHH-H---HCCCeEEEEEeccCC-CCCccccccCHHHHHHhcccccCCEEEEECCHHHHHHHHHH
Confidence 999888876533 2 223566666655432 22334677776444443333335689999999999977553
No 31
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.93 E-value=4.7e-24 Score=220.38 Aligned_cols=211 Identities=19% Similarity=0.253 Sum_probs=160.4
Q ss_pred ceeEEEEEEecCCeEEEEEecCCC----CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHH
Q 005126 311 ETCILSARVFPSKAIELILPKHAG----LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSS 384 (713)
Q Consensus 311 ~~~ivs~~~l~~~~v~l~l~~~~~----~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~ 384 (713)
..++++++.+++++.++++..+.+ +.|+||||+.|.+|..+..++||||++|.|. ++.++|+||.. |..|..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~--~~~l~~~i~~~~~G~~s~~ 80 (241)
T cd06214 3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPG--DDELRITVKRVPGGRFSNW 80 (241)
T ss_pred eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCC--CCcEEEEEEEcCCCccchh
Confidence 346778888899999998887654 5899999999999865566889999999874 34899999985 778998
Q ss_pred HHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcC-CCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEE
Q 005126 385 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 463 (713)
Q Consensus 385 L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~-~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~ 463 (713)
|.+.++ .+.++.|.||+|.+..+.. ++++++|||||+||||++++++++.... ..++++++|+
T Consensus 81 l~~~~~----------~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~------~~~~v~l~~~ 144 (241)
T cd06214 81 ANDELK----------AGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE------PASRVTLVYG 144 (241)
T ss_pred HHhccC----------CCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC------CCCcEEEEEE
Confidence 875433 4678999999998755433 5789999999999999999999988752 2467999999
Q ss_pred eCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhc----cCCCCeeEEcCcchHHHHH
Q 005126 464 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVR----FGTQSNYAVNGLESLIWMA 539 (713)
Q Consensus 464 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~vcGp~~~~~~a 539 (713)
+|+.+++.+.+++.+ +.+. ...++++..++|+++..+....|.+++....+... ..+...+|+|||+.|+...
T Consensus 145 ~r~~~~~~~~~~l~~-l~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv~~v 221 (241)
T cd06214 145 NRTEASVIFREELAD-LKAR--YPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAV 221 (241)
T ss_pred eCCHHHhhHHHHHHH-HHHh--CcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHHHHHHH
Confidence 999999977777654 3222 22478888888876655544567776544433321 1234679999999999877
Q ss_pred HHH
Q 005126 540 ALV 542 (713)
Q Consensus 540 ~~~ 542 (713)
.-+
T Consensus 222 ~~~ 224 (241)
T cd06214 222 EAA 224 (241)
T ss_pred HHH
Confidence 543
No 32
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.92 E-value=4.4e-24 Score=219.27 Aligned_cols=209 Identities=16% Similarity=0.208 Sum_probs=160.2
Q ss_pred eEEEEEEecCCeEEEEEecCC---CCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHHH
Q 005126 313 CILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQ 387 (713)
Q Consensus 313 ~ivs~~~l~~~~v~l~l~~~~---~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~~ 387 (713)
.+++.+.+++++.++++..++ ...++||||+.|.+|..+....||||++|.+. +++.++|+||.. |..|+.|.+
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~-~~~~~~~~v~~~~~G~~s~~l~~ 80 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDD-DKGYFDLLIKIYPGGKMSQYLHS 80 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCC-cCCEEEEEEEECCCCcchhHHhc
Confidence 356667788898888887764 37899999999999976666899999999875 556899999985 888888864
Q ss_pred HHHhcccCCCCCCcceeEEEECCCCCCCCCcCCC-CeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 005126 388 MIHAELDSDADQMRCIPVAIEGPYGPATMDFLRY-DSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 466 (713)
Q Consensus 388 ~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~-~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~ 466 (713)
. + .+.++.++||||.+..+.... +++||||||+||||++++++++..+. ...++++++|++|+
T Consensus 81 ~-~----------~G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-----~~~~~i~l~~~~r~ 144 (234)
T cd06183 81 L-K----------PGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDP-----EDKTKISLLYANRT 144 (234)
T ss_pred C-C----------CCCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCc-----CcCcEEEEEEecCC
Confidence 2 1 478899999999875443333 89999999999999999999997642 12478999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhcc--CCCCeeEEcCcchHHH-HHHH
Q 005126 467 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRF--GTQSNYAVNGLESLIW-MAAL 541 (713)
Q Consensus 467 ~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~vcGp~~~~~-~a~~ 541 (713)
.+++.+.+++.+.. +. ...+++++.++|++++.+....|++++..+.+.... .++..+|+|||++|+. ...-
T Consensus 145 ~~~~~~~~~l~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~ 219 (234)
T cd06183 145 EEDILLREELDELA-KK--HPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIEGAVKG 219 (234)
T ss_pred HHHhhhHHHHHHHH-Hh--CcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHH
Confidence 99987777765432 21 124788888888877666667788876554444432 2346799999999998 6644
No 33
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.92 E-value=4.1e-24 Score=217.47 Aligned_cols=198 Identities=22% Similarity=0.306 Sum_probs=151.9
Q ss_pred eeEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCC-CcceeeeeeeeCCCCCCCcEEEEEEeC---CchhHHHHH
Q 005126 312 TCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSIS-KFQWHSFSITSSSSVDDQTMSLIVKCD---GEWTSSLYQ 387 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s-~~q~HPFTIaS~p~~~~~~l~~~Ik~~---G~~T~~L~~ 387 (713)
..+++.+.+++++.++++..+..+.|+||||+.|.++..+ ..++|||||+|.|. ++.++|+||.. |+.|+.|.+
T Consensus 3 ~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~~~~g~~s~~l~~ 80 (218)
T cd06196 3 VTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSYPDHDGVTEQLGR 80 (218)
T ss_pred eEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEcCCCCcHhHHHHh
Confidence 4577888889999999999887889999999999987543 34789999999874 47899999983 778988854
Q ss_pred HHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc
Q 005126 388 MIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS 467 (713)
Q Consensus 388 ~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~ 467 (713)
. + +|.++.++||||.+.. .+++||||||+||||++|+++++...+ ..++++|+|++|+.
T Consensus 81 l-~----------~G~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~------~~~~v~l~~~~r~~ 139 (218)
T cd06196 81 L-Q----------PGDTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG------KLEGNTLIFANKTE 139 (218)
T ss_pred C-C----------CCCEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC------CCceEEEEEecCCH
Confidence 2 2 5788999999998642 268999999999999999999998642 23679999999999
Q ss_pred chhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 468 QEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 468 ~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+|+.+.+++.+. . ++++..++|+++.+ ....|++++..+.+... .....+|+|||++|+..+.-+
T Consensus 140 ~~~~~~~el~~l-~-------~~~~~~~~s~~~~~-~~~~g~~~~~~l~~~~~-~~~~~vyiCGp~~m~~~~~~~ 204 (218)
T cd06196 140 KDIILKDELEKM-L-------GLKFINVVTDEKDP-GYAHGRIDKAFLKQHVT-DFNQHFYVCGPPPMEEAINGA 204 (218)
T ss_pred HHHhhHHHHHHh-h-------cceEEEEEcCCCCC-CeeeeEECHHHHHHhcC-CCCCEEEEECCHHHHHHHHHH
Confidence 999887776542 1 34566777875432 23467776544333322 224679999999999887543
No 34
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.92 E-value=7.7e-24 Score=224.77 Aligned_cols=207 Identities=21% Similarity=0.283 Sum_probs=148.7
Q ss_pred ceeEEEEEEecCC--eEEEEEecC---CCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHH
Q 005126 311 ETCILSARVFPSK--AIELILPKH---AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSL 385 (713)
Q Consensus 311 ~~~ivs~~~l~~~--~v~l~l~~~---~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L 385 (713)
..++++.+.++++ .+.+.++.+ +.+.|+||||+.|++|... .|||||+|.|. +++.++|+||..|.+|+.|
T Consensus 7 ~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~-~~~~l~l~Ik~~G~~S~~L 82 (289)
T PRK08345 7 DAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPT-RKGFFELCIRRAGRVTTVI 82 (289)
T ss_pred eEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCC-CCCEEEEEEEeCChHHHHH
Confidence 3566777777776 455555443 2467999999999998643 48999999885 5678999999999999988
Q ss_pred HHHHHhcccCCCCCCcceeEEEECCCCCC-CCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEe
Q 005126 386 YQMIHAELDSDADQMRCIPVAIEGPYGPA-TMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 464 (713)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~v~VeGPYG~~-~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~ 464 (713)
.+ ++ +++++.|+||||.+ ..+....++++|||||+||||++|++++++.+. ...++++|+|++
T Consensus 83 ~~-l~----------~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~-----~~~~~v~l~~~~ 146 (289)
T PRK08345 83 HR-LK----------EGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR-----WKYGNITLIYGA 146 (289)
T ss_pred Hh-CC----------CCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcC-----CCCCcEEEEEec
Confidence 64 22 57889999999984 322223468999999999999999999987642 123689999999
Q ss_pred CCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccc-----------hhhhccchhHHHHhccCCCCeeEEcCcc
Q 005126 465 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVT-----------VREVLNDLSLVRAVRFGTQSNYAVNGLE 533 (713)
Q Consensus 465 r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~vcGp~ 533 (713)
|+.+|+.+.+++.+... +..+++++..++++++.... .+|.+++... +.....++..+|+|||+
T Consensus 147 r~~~d~~~~deL~~l~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~~~~~~~~~~vyiCGP~ 221 (289)
T PRK08345 147 KYYEDLLFYDELIKDLA----EAENVKIIQSVTRDPEWPGCHGLPQGFIERVCKGVVTDLFR-EANTDPKNTYAAICGPP 221 (289)
T ss_pred CCHHHhhHHHHHHHHHh----cCCCEEEEEEecCCCCCcCccccccccccccccCchhhhhh-hcCCCccccEEEEECCH
Confidence 99999988888765322 33578889999986532110 1233333211 11111234679999999
Q ss_pred hHHHHHHHH
Q 005126 534 SLIWMAALV 542 (713)
Q Consensus 534 ~~~~~a~~~ 542 (713)
+|++...-.
T Consensus 222 ~m~~~v~~~ 230 (289)
T PRK08345 222 VMYKFVFKE 230 (289)
T ss_pred HHHHHHHHH
Confidence 999887553
No 35
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.91 E-value=3.9e-23 Score=225.60 Aligned_cols=210 Identities=17% Similarity=0.236 Sum_probs=156.7
Q ss_pred eeEEEEEEecCCeEEEEEecCC----CCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHH
Q 005126 312 TCILSARVFPSKAIELILPKHA----GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSL 385 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~----~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L 385 (713)
.++.+.+..++++.++++..+. .+.|+||||+.|.+|..+....|||||+|.| +++.++|+||.. |..|..|
T Consensus 4 ~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p--~~~~l~i~vk~~~~G~~S~~l 81 (352)
T TIGR02160 4 LTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAP--APGEIRVAVKKIPGGLFSTWA 81 (352)
T ss_pred eEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCC--CCCcEEEEEEEeCCCcchHHH
Confidence 4567777888999999998653 3589999999999974444567999999987 356899999984 6678888
Q ss_pred HHHHHhcccCCCCCCcceeEEEECCCCCCCCCcC--CCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEE
Q 005126 386 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFL--RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 463 (713)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~--~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~ 463 (713)
.+.++ .|+++.|.||+|.+..+.. ..++++|||||+||||++|+++++..++ ...+++|+|+
T Consensus 82 ~~~l~----------~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~------~~~~v~l~~~ 145 (352)
T TIGR02160 82 NDEIR----------PGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE------PRSTFTLVYG 145 (352)
T ss_pred HhcCC----------CCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC------CCceEEEEEE
Confidence 76543 5788999999998754322 3478999999999999999999987642 2368999999
Q ss_pred eCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhc----cCCCCeeEEcCcchHHHHH
Q 005126 464 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVR----FGTQSNYAVNGLESLIWMA 539 (713)
Q Consensus 464 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~vcGp~~~~~~a 539 (713)
+|+.+|+.+.+++.+.. +. ...+++++..++++++.+....|+++...+.+.+. ..+...+|+|||++|+...
T Consensus 146 ~r~~~d~~~~~el~~l~-~~--~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v 222 (352)
T TIGR02160 146 NRRTASVMFAEELADLK-DK--HPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDA 222 (352)
T ss_pred eCCHHHHHHHHHHHHHH-Hh--CcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHH
Confidence 99999998888876532 21 12358888888887654444556665433333221 2233679999999999987
Q ss_pred HHH
Q 005126 540 ALV 542 (713)
Q Consensus 540 ~~~ 542 (713)
.-.
T Consensus 223 ~~~ 225 (352)
T TIGR02160 223 EQA 225 (352)
T ss_pred HHH
Confidence 543
No 36
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.91 E-value=4.1e-23 Score=229.28 Aligned_cols=208 Identities=14% Similarity=0.223 Sum_probs=156.9
Q ss_pred eeEEEEEEecCCeEEEEEecCC---CCccCCCeEEEEeCCCCC--CcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHH
Q 005126 312 TCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSIS--KFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSS 384 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~---~~~~~pGQ~v~L~~P~~s--~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~ 384 (713)
.++++.+..++++.++++..+. ...|+||||+.|.+|..+ ..++|||||+|.|. ++.++|+||.. |..|+.
T Consensus 157 ~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~~~G~~S~~ 234 (399)
T PRK13289 157 FRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKREAGGKVSNY 234 (399)
T ss_pred EEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEECCCCeehHH
Confidence 4677788889999999987643 368999999999986332 33579999999874 56899999986 999999
Q ss_pred HHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEe
Q 005126 385 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 464 (713)
Q Consensus 385 L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~ 464 (713)
|.+.++ +|+++.|.||||.+..+....+++||||||+||||++|+++++..++ ..++++|+|++
T Consensus 235 L~~~l~----------~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~ 298 (399)
T PRK13289 235 LHDHVN----------VGDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ------PKRPVHFIHAA 298 (399)
T ss_pred HhhcCC----------CCCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC------CCCCEEEEEEe
Confidence 987443 57899999999998655445689999999999999999999987652 24789999999
Q ss_pred CCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCc-----cchhhhccchhHHHHhccCCCCeeEEcCcchHHHHH
Q 005126 465 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS-----VTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMA 539 (713)
Q Consensus 465 r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a 539 (713)
|+.+++.+.+++.+ +.+ +..+++++.+++++...+ ....|++++..+.+... .++..+|+|||++|+...
T Consensus 299 r~~~~~~~~~eL~~-l~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~~~~-~~~~~vyiCGp~~m~~~v 373 (399)
T PRK13289 299 RNGGVHAFRDEVEA-LAA---RHPNLKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEAWLP-DPDADFYFCGPVPFMQFV 373 (399)
T ss_pred CChhhchHHHHHHH-HHH---hCCCcEEEEEECCCccccccCCcccccCcccHHHHHhhCC-CCCCEEEEECCHHHHHHH
Confidence 99999988777654 322 224788888888754321 01246666543333322 235789999999999877
Q ss_pred HHH
Q 005126 540 ALV 542 (713)
Q Consensus 540 ~~~ 542 (713)
.-.
T Consensus 374 ~~~ 376 (399)
T PRK13289 374 AKQ 376 (399)
T ss_pred HHH
Confidence 543
No 37
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.91 E-value=5.3e-23 Score=220.56 Aligned_cols=214 Identities=14% Similarity=0.128 Sum_probs=157.8
Q ss_pred eeEEEEEEecCCeEEEEEecCC--CCccCCCeEEEEeCCCC---CCcceeeeeeeeCCCCCCCcEEEEEEe--CCchhHH
Q 005126 312 TCILSARVFPSKAIELILPKHA--GLKFTPTSVIFMKIPSI---SKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSS 384 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~--~~~~~pGQ~v~L~~P~~---s~~q~HPFTIaS~p~~~~~~l~~~Ik~--~G~~T~~ 384 (713)
.++.+.+..++++.++++..+. .+.++||||+.+.+|.. ..-.+||||++|.|. ++++++++||. .|..|+.
T Consensus 55 ~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~-~~~~le~~IK~~~~G~~S~~ 133 (325)
T PTZ00274 55 YQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANH-TKGYFDIIVKRKKDGLMTNH 133 (325)
T ss_pred EEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCC-CCCeEEEEEEEcCCCcccHH
Confidence 5677778889999998886543 68999999999877632 123589999999986 56789999998 6778999
Q ss_pred HHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEe
Q 005126 385 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 464 (713)
Q Consensus 385 L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~ 464 (713)
|.+ ++ +|+.+.+.||+|....+....++++|||||+||||++||+++++.++.........+++|+|++
T Consensus 134 L~~-lk----------~Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~ 202 (325)
T PTZ00274 134 LFG-MH----------VGDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCN 202 (325)
T ss_pred Hhc-CC----------CCCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEc
Confidence 985 33 5889999999887543334457999999999999999999998875311111123589999999
Q ss_pred CCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCC--CCccchhhhccchhHHHHhccCC--CCeeEEcCcchHHHHHH
Q 005126 465 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTVREVLNDLSLVRAVRFGT--QSNYAVNGLESLIWMAA 540 (713)
Q Consensus 465 r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~--~~~~~~~g~~~~~~~~~~~~~~~--~~~~~vcGp~~~~~~a~ 540 (713)
|+.+|+.+.+++.+ +.+.. ..+++++..+++++ +.+.+..|++++..+.+.....+ +..+|+|||++|++.++
T Consensus 203 R~~~di~~~~eL~~-La~~~--~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylCGPp~Mm~av~ 279 (325)
T PTZ00274 203 RTERHILLKGLFDD-LARRY--SNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQLLNHVA 279 (325)
T ss_pred CCHHHhhHHHHHHH-HHHhC--CCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEeCCHHHHHHhc
Confidence 99999988777654 33221 12688888888653 33455678888765444433222 24799999999998773
No 38
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.91 E-value=2.8e-23 Score=215.54 Aligned_cols=194 Identities=21% Similarity=0.351 Sum_probs=145.3
Q ss_pred EEEEEecCCeEEEEEecCC-CCccCCCeEEEEeCCC-CCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHhc
Q 005126 315 LSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPS-ISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAE 392 (713)
Q Consensus 315 vs~~~l~~~~v~l~l~~~~-~~~~~pGQ~v~L~~P~-~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~~ 392 (713)
++++.+++++.+++++.+. ...|+||||+.|.+|. .+.+++|||||+|.|. +++.++|+||..|..|+.|.+. +
T Consensus 2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~-~~~~l~l~v~~~G~~s~~l~~l-~-- 77 (246)
T cd06218 2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDP-EEGTITLLYKVVGKGTRLLSEL-K-- 77 (246)
T ss_pred cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccC-CCCEEEEEEEEECcchHHHhcC-C--
Confidence 3566778999999998766 5789999999999986 4467899999999875 5678999999999999877532 1
Q ss_pred ccCCCCCCcceeEEEECCCCC-CCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhh
Q 005126 393 LDSDADQMRCIPVAIEGPYGP-ATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEIC 471 (713)
Q Consensus 393 ~~~~~~~~~~~~v~VeGPYG~-~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~ 471 (713)
+|+++.|+||||. +..+ ...++++|||||+||||++|+++++... .++++|+|++|+.+|+.
T Consensus 78 --------~Gd~v~i~gP~G~~~~~~-~~~~~~vlIagGtGIaP~~s~l~~~~~~--------~~~v~l~~~~r~~~d~~ 140 (246)
T cd06218 78 --------AGDELDVLGPLGNGFDLP-DDDGKVLLVGGGIGIAPLLFLAKQLAER--------GIKVTVLLGFRSADDLF 140 (246)
T ss_pred --------CCCEEEEEecCCCCcCCC-CCCCcEEEEecccCHHHHHHHHHHHHhc--------CCceEEEEEccchhhhh
Confidence 5789999999996 3333 3578999999999999999999998763 25799999999999988
Q ss_pred hHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 472 LLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 472 ~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+.+++.+. . . ++ .++.+++ +.+.++.+.+ .+.+.....++..+|+|||++|+....-.
T Consensus 141 ~~~eL~~l-~----~----~~--~~~~~~~-~~~~~g~v~~-~l~~~~~~~~~~~vyiCGp~~mv~~~~~~ 198 (246)
T cd06218 141 LVEEFEAL-G----A----EV--YVATDDG-SAGTKGFVTD-LLKELLAEARPDVVYACGPEPMLKAVAEL 198 (246)
T ss_pred hHHHHHhh-C----C----cE--EEEcCCC-CCCcceehHH-HHHHHhhccCCCEEEEECCHHHHHHHHHH
Confidence 88877542 1 1 12 2233322 2234455554 23333333345789999999999887654
No 39
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.91 E-value=5.5e-23 Score=212.93 Aligned_cols=194 Identities=18% Similarity=0.296 Sum_probs=143.7
Q ss_pred EEEEEecCCeEEEEEecCC-CCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHhcc
Q 005126 315 LSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAEL 393 (713)
Q Consensus 315 vs~~~l~~~~v~l~l~~~~-~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~~~ 393 (713)
++.+.+++++.++++..+. ...++||||++|.+|.....++|||||+|.|. ++++++|+||..|..|+.|.+. +
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~-~~~~l~l~i~~~G~~t~~l~~~-~--- 76 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDP-EEGTISLLVEIRGPKTKLIAEL-K--- 76 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCC-CCCEEEEEEEEcCchHHHHHhC-C---
Confidence 3556678899999998654 36899999999999854456899999999875 5678999999999999988532 2
Q ss_pred cCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhH
Q 005126 394 DSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLL 473 (713)
Q Consensus 394 ~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~ 473 (713)
+|.++.|+||||.+.......++++|||||+||||++++++++..+ .++++++|++|+.+|+.+.
T Consensus 77 -------~G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~--------~~~v~l~~~~r~~~d~~~~ 141 (243)
T cd06192 77 -------PGEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN--------GNKVTVLAGAKKAKEEFLD 141 (243)
T ss_pred -------CCCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC--------CCeEEEEEecCcHHHHHHH
Confidence 5788999999998654333478999999999999999999998753 2679999999999998877
Q ss_pred HhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 474 NSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 474 ~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+++... . ...++++++. +.+..+.+.+. .+.....+...+|+|||++|++.+.-.
T Consensus 142 ~el~~~-~---------~~~~~~~~~~--~~~~~g~v~~~--~~~~~~~~~~~v~icGp~~mv~~~~~~ 196 (243)
T cd06192 142 EYFELP-A---------DVEIWTTDDG--ELGLEGKVTDS--DKPIPLEDVDRIIVAGSDIMMKAVVEA 196 (243)
T ss_pred HHHHhh-c---------CeEEEEecCC--CCccceeechh--hhhhhcccCCEEEEECCHHHHHHHHHH
Confidence 776432 0 1233444332 23334444432 111122223579999999999987654
No 40
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.91 E-value=8.6e-23 Score=218.53 Aligned_cols=218 Identities=16% Similarity=0.182 Sum_probs=156.0
Q ss_pred eeEEEEEEec-----CCeEEEEEecCCCCccCCCeEEEEeCCCCC------CcceeeeeeeeCCCCC---CCcEEEEEEe
Q 005126 312 TCILSARVFP-----SKAIELILPKHAGLKFTPTSVIFMKIPSIS------KFQWHSFSITSSSSVD---DQTMSLIVKC 377 (713)
Q Consensus 312 ~~ivs~~~l~-----~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s------~~q~HPFTIaS~p~~~---~~~l~~~Ik~ 377 (713)
.++++.+.+. +++.++++..+++++|+||||+.|..|... ...+|+|||+|+|..+ +.+++|+||.
T Consensus 27 ~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~ 106 (307)
T PLN03116 27 ATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRR 106 (307)
T ss_pred EEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEE
Confidence 4567777776 789999999888899999999999887421 1247999999998522 2379999985
Q ss_pred ---------------CCchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCC-Cc-CCCCeEEEEEecCChhhHHHHH
Q 005126 378 ---------------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATM-DF-LRYDSLLLVAGGIGITPFLSIL 440 (713)
Q Consensus 378 ---------------~G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~-~~-~~~~~vvlIAGGiGITP~lsil 440 (713)
.|-.|+.|.+ ++ .|+.+.|.||+|.+.. +- ...+++||||||+||||++||+
T Consensus 107 ~~~~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml 175 (307)
T PLN03116 107 AVYYDPETGKEDPAKKGVCSNFLCD-AK----------PGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFL 175 (307)
T ss_pred EEEecCCcCCCCCccCcchhhhHhh-CC----------CCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHH
Confidence 4777888876 43 5789999999998753 21 3346899999999999999999
Q ss_pred HHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHH--H
Q 005126 441 QEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVR--A 518 (713)
Q Consensus 441 ~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~--~ 518 (713)
++++..... ......++.|+|++|+.+|+.+.+++.+.. +.. ..+++++..+++++..+.+.++.+.+..... .
T Consensus 176 ~~~l~~~~~-~~~~~~~v~L~~g~R~~~d~~~~deL~~l~-~~~--~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~ 251 (307)
T PLN03116 176 RRMFMEDVP-AFKFGGLAWLFLGVANSDSLLYDDEFERYL-KDY--PDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDE 251 (307)
T ss_pred HHHHhhccc-cccCCCcEEEEEecCCcccchHHHHHHHHH-HhC--CCcEEEEEEEccCCcccCCCccchhhHHHHHHHH
Confidence 998764311 011235799999999999998888776532 211 1368888889987655443445554422211 1
Q ss_pred -hc-cCCCCeeEEcCcchHHHHHHHHHH
Q 005126 519 -VR-FGTQSNYAVNGLESLIWMAALVGI 544 (713)
Q Consensus 519 -~~-~~~~~~~~vcGp~~~~~~a~~~~~ 544 (713)
.. ..++..+|+|||++|+..+.-.+.
T Consensus 252 ~~~~~~~~~~vYiCGp~~mv~~v~~~L~ 279 (307)
T PLN03116 252 IFKLLDNGAHIYFCGLKGMMPGIQDTLK 279 (307)
T ss_pred HHhhhcCCcEEEEeCCHHHHHHHHHHHH
Confidence 11 224578999999999987655433
No 41
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.91 E-value=6.4e-23 Score=213.04 Aligned_cols=207 Identities=15% Similarity=0.201 Sum_probs=150.4
Q ss_pred eeEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEe--CCchhHHHHHHH
Q 005126 312 TCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLYQMI 389 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~--~G~~T~~L~~~~ 389 (713)
..+++.+...+++.++++..+. ..|+||||+.|.++..+...+|||||+|.|. ++.++++||. .|..|+.|.+ +
T Consensus 7 ~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~~~G~~S~~L~~-l 82 (248)
T PRK10926 7 GKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTVPEGKLSPRLAA-L 82 (248)
T ss_pred EEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEeCCCCcChHHHh-C
Confidence 4566777788999999997652 3799999999998643444579999999984 4579999988 4899999864 3
Q ss_pred HhcccCCCCCCcceeEEEECCCCC-CCCCcC-CCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc
Q 005126 390 HAELDSDADQMRCIPVAIEGPYGP-ATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS 467 (713)
Q Consensus 390 ~~~~~~~~~~~~~~~v~VeGPYG~-~~~~~~-~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~ 467 (713)
+ .|+++.|.||+|. +..+-. ..++++|||||+||||++|+++++...+ ..++++|+|++|+.
T Consensus 83 ~----------~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~------~~~~v~l~~g~r~~ 146 (248)
T PRK10926 83 K----------PGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE------RFKNLVLVHAARYA 146 (248)
T ss_pred C----------CCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC------CCCcEEEEEeCCcH
Confidence 3 5889999999844 332322 3478999999999999999999986532 23679999999999
Q ss_pred chhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchh----HHHHhcc---CCCCeeEEcCcchHHHHHH
Q 005126 468 QEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLS----LVRAVRF---GTQSNYAVNGLESLIWMAA 540 (713)
Q Consensus 468 ~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~----~~~~~~~---~~~~~~~vcGp~~~~~~a~ 540 (713)
+|+.+.+++.+ +.+. ...++++...+++++. ....+|++++.. +.+.+.. .++..+|+|||++|+..+.
T Consensus 147 ~d~~~~~el~~-l~~~--~~~~~~v~~~~s~~~~-~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~ 222 (248)
T PRK10926 147 ADLSYLPLMQE-LEQR--YEGKLRIQTVVSRETA-PGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQ 222 (248)
T ss_pred HHHHHHHHHHH-HHHh--CcCCEEEEEEECCCCC-CCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHH
Confidence 99988888764 3221 1236888888888653 223456665422 1121211 2346799999999999886
Q ss_pred HH
Q 005126 541 LV 542 (713)
Q Consensus 541 ~~ 542 (713)
-.
T Consensus 223 ~~ 224 (248)
T PRK10926 223 QL 224 (248)
T ss_pred HH
Confidence 54
No 42
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.91 E-value=6.5e-23 Score=213.33 Aligned_cols=192 Identities=17% Similarity=0.297 Sum_probs=146.0
Q ss_pred eeEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHh
Q 005126 312 TCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 391 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~ 391 (713)
..+++.+.+++++.++++..++...|+||||+.|.+|..+...+|||||+|.| +++++|+||..|..|+.|.+. +
T Consensus 7 ~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~~G~~t~~l~~l-~- 81 (250)
T PRK00054 7 MKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRKVGEGTKKLSKL-K- 81 (250)
T ss_pred EEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEEcChHHHHHhcC-C-
Confidence 56778888899999999997767889999999999997666679999999986 468999999999999988642 2
Q ss_pred cccCCCCCCcceeEEEECCCCC-CCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 005126 392 ELDSDADQMRCIPVAIEGPYGP-ATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 470 (713)
Q Consensus 392 ~~~~~~~~~~~~~v~VeGPYG~-~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l 470 (713)
++.++.|+||||. +..+ .+.+++++||||+||||++|+++++..+ .++++++|++|+.+|+
T Consensus 82 ---------~G~~v~i~gP~G~~f~l~-~~~~~~vlIagG~GiaP~~s~l~~~~~~--------~~~v~l~~~~r~~~d~ 143 (250)
T PRK00054 82 ---------EGDELDIRGPLGNGFDLE-EIGGKVLLVGGGIGVAPLYELAKELKKK--------GVEVTTVLGARTKDEV 143 (250)
T ss_pred ---------CCCEEEEEcccCCCCCCC-CCCCeEEEEeccccHHHHHHHHHHHHHc--------CCcEEEEEEcCCHHHh
Confidence 5788999999997 4332 3668999999999999999999998753 2569999999999999
Q ss_pred hhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 471 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 471 ~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+.+++.. + + +. +++.+++ +.+.++++++...... .+.+.+|+|||++|+..+.-.
T Consensus 144 ~~~~el~~-~-----~--~~----~~~~~~~-~~~~~g~v~~~l~~~~---~~~~~vyvCGp~~m~~~v~~~ 199 (250)
T PRK00054 144 IFEEEFAK-V-----G--DV----YVTTDDG-SYGFKGFVTDVLDELD---SEYDAIYSCGPEIMMKKVVEI 199 (250)
T ss_pred hhHHHHHh-c-----C--CE----EEEecCC-CCCcccchhHhHhhhc---cCCCEEEEeCCHHHHHHHHHH
Confidence 88777654 2 1 11 2222222 2334455554322111 234579999999999887553
No 43
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.90 E-value=8e-23 Score=214.10 Aligned_cols=200 Identities=16% Similarity=0.232 Sum_probs=148.1
Q ss_pred eeEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHh
Q 005126 312 TCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 391 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~ 391 (713)
..+++++..++++.++++..+ ..|+||||+.|.+|..+ .|||||++.+ ++.++|+||..|..|+.|.+ ++
T Consensus 10 ~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~---~~~~~~~Ik~~G~~S~~L~~-l~- 79 (263)
T PRK08221 10 YKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG---DGYIDLTIRRVGKVTDEIFN-LK- 79 (263)
T ss_pred EEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC---CCEEEEEEEeCCchhhHHHh-CC-
Confidence 567777888999999999864 57999999999998643 3999998763 56899999999999998864 22
Q ss_pred cccCCCCCCcceeEEEECCCCC-CCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 005126 392 ELDSDADQMRCIPVAIEGPYGP-ATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 470 (713)
Q Consensus 392 ~~~~~~~~~~~~~v~VeGPYG~-~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l 470 (713)
+|..+.|+||||. +..+-...+++||||||+||||++|+++++..+. ...++++|+|++|+.+++
T Consensus 80 ---------~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~-----~~~~~v~L~~g~r~~~~l 145 (263)
T PRK08221 80 ---------EGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENP-----QEIKSLDLILGFKNPDDI 145 (263)
T ss_pred ---------CCCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCc-----ccCceEEEEEecCCHHHh
Confidence 5788999999997 4433334579999999999999999999987642 123689999999999999
Q ss_pred hhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 471 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 471 ~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+.+++.+.. + + .++++.++++++.+....|++++..........++..+|+|||++|+..+...
T Consensus 146 ~~~~el~~~~-~----~--~~~~~~~~~~~~~~~~~~G~v~~~l~~~~~~~~~~~~vylCGp~~mv~~~~~~ 210 (263)
T PRK08221 146 LFKEDLKRWR-E----K--INLILTLDEGEEGYRGNVGLVTKYIPELTLKDIDNMQVIVVGPPIMMKFTVLE 210 (263)
T ss_pred hHHHHHHHHh-h----c--CcEEEEecCCCCCCccCccccChhhHhccCCCcCCeEEEEECCHHHHHHHHHH
Confidence 8888876432 1 1 22444455554444445677765322211122235679999999999887543
No 44
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.90 E-value=1.2e-22 Score=210.96 Aligned_cols=194 Identities=16% Similarity=0.248 Sum_probs=143.1
Q ss_pred eEEEEEEecCCeEEEEEecCCC-CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHh
Q 005126 313 CILSARVFPSKAIELILPKHAG-LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 391 (713)
Q Consensus 313 ~ivs~~~l~~~~v~l~l~~~~~-~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~ 391 (713)
.+++.+.+++++..++++.+.. ..|+||||+.|+++.. .++|||||+|.|. +++.++|+||..|+.|+.|.+. +
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~-~~~~~~~~vk~~G~~t~~l~~l-~- 76 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDP-EKGTITIVVQVVGKSTRELATL-E- 76 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcC-CCCEEEEEEEeCCchHHHHHhc-C-
Confidence 3567777889999999987543 5799999999998643 3679999999875 5678999999999999887442 2
Q ss_pred cccCCCCCCcceeE-EEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 005126 392 ELDSDADQMRCIPV-AIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 470 (713)
Q Consensus 392 ~~~~~~~~~~~~~v-~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l 470 (713)
.|.++ .++||||.+.. ..++++++|||||+||||++|+++++.+. .++++|+|++|+.+++
T Consensus 77 ---------~G~~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~--------~~~v~l~~~~r~~~~~ 138 (248)
T cd06219 77 ---------EGDKIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEA--------GNRVITIIGARTKDLV 138 (248)
T ss_pred ---------CCCEeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHc--------CCeEEEEEEcCCHHHh
Confidence 46788 69999998743 34568999999999999999999998753 2579999999999999
Q ss_pred hhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHh-ccCCCCeeEEcCcchHHHHHHHH
Q 005126 471 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAV-RFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 471 ~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+.+++.+. . + + . .+.+++. +.+..|++++. +.+.. ...+.+.+|+|||++|+..+.-.
T Consensus 139 ~~~~el~~l-~----~--~--~-~~~~~~~--~~~~~g~v~~~-l~~~~~~~~~~~~vyiCGP~~m~~~~~~~ 198 (248)
T cd06219 139 ILEDEFRAV-S----D--E--L-IITTDDG--SYGEKGFVTDP-LKELIESGEKVDLVIAIGPPIMMKAVSEL 198 (248)
T ss_pred hhHHHHHhh-c----C--e--E-EEEeCCC--CCCccccchHH-HHHHHhccCCccEEEEECCHHHHHHHHHH
Confidence 887776542 1 1 1 1 2234322 22344555542 23333 22234679999999999877543
No 45
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.90 E-value=1.6e-22 Score=213.91 Aligned_cols=194 Identities=18% Similarity=0.317 Sum_probs=144.9
Q ss_pred eEEEEEEecCCeEEEEEecCC-CCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHh
Q 005126 313 CILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 391 (713)
Q Consensus 313 ~ivs~~~l~~~~v~l~l~~~~-~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~ 391 (713)
++++.+.+++++.++++..+. ...++||||+.|+++..+ ++|||||+|.+. +++.++|+||..|..|+.|.+. +
T Consensus 3 ~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~~--~~rpySias~~~-~~~~i~l~vk~~G~~T~~L~~l-~- 77 (281)
T PRK06222 3 KILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKG--ERIPLTIADYDR-EKGTITIVFQAVGKSTRKLAEL-K- 77 (281)
T ss_pred EEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCCC--CceeeEeeEEcC-CCCEEEEEEEeCCcHHHHHhcC-C-
Confidence 467778889999999997654 357999999999997532 579999999875 5678999999999999988732 2
Q ss_pred cccCCCCCCcceeE-EEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 005126 392 ELDSDADQMRCIPV-AIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 470 (713)
Q Consensus 392 ~~~~~~~~~~~~~v-~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l 470 (713)
+|+.+ .|.||||.+.. ...++++++||||+||||++++++++.++ ..+++++|++|+.+|+
T Consensus 78 ---------~Gd~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~--------~~~v~l~~g~r~~~d~ 139 (281)
T PRK06222 78 ---------EGDSILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEA--------GNKVITIIGARNKDLL 139 (281)
T ss_pred ---------CCCEEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHC--------CCeEEEEEecCCHHHh
Confidence 57888 69999998643 34567999999999999999999998753 2479999999999999
Q ss_pred hhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCC-CCeeEEcCcchHHHHHHHH
Q 005126 471 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGT-QSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 471 ~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~vcGp~~~~~~a~~~ 542 (713)
.+.+++.+ +. . . ++++.+++ +.+.+|++++. +.+.....+ ...+|+|||++|+....-.
T Consensus 140 ~~~~el~~-~~----~--~----~~v~~~d~-~~g~~G~v~~~-l~~~~~~~~~~~~vy~CGP~~M~~~v~~~ 199 (281)
T PRK06222 140 ILEDEMKA-VS----D--E----LYVTTDDG-SYGRKGFVTDV-LKELLESGKKVDRVVAIGPVIMMKFVAEL 199 (281)
T ss_pred hcHHHHHh-hC----C--e----EEEEcCCC-CcCcccchHHH-HHHHhhcCCCCcEEEEECCHHHHHHHHHH
Confidence 88887643 21 1 1 12333332 34456666653 223322222 3579999999999887653
No 46
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.90 E-value=3.6e-22 Score=211.82 Aligned_cols=216 Identities=18% Similarity=0.242 Sum_probs=154.5
Q ss_pred eeEEEEEEec-----CCeEEEEEecCCCCccCCCeEEEEeCCCCC-----CcceeeeeeeeCCCC---CCCcEEEEEEeC
Q 005126 312 TCILSARVFP-----SKAIELILPKHAGLKFTPTSVIFMKIPSIS-----KFQWHSFSITSSSSV---DDQTMSLIVKCD 378 (713)
Q Consensus 312 ~~ivs~~~l~-----~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s-----~~q~HPFTIaS~p~~---~~~~l~~~Ik~~ 378 (713)
..+++.+.+. +++.++++..+..+.|+||||+.|..|... ....|||||+|.|.. +++.++|+||..
T Consensus 11 ~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~ 90 (286)
T cd06208 11 GKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRL 90 (286)
T ss_pred EEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEE
Confidence 4566666665 689999998777889999999999877432 234799999998853 246899999985
Q ss_pred ------------CchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCc-CCCCeEEEEEecCChhhHHHHHHHHHH
Q 005126 379 ------------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF-LRYDSLLLVAGGIGITPFLSILQEIAS 445 (713)
Q Consensus 379 ------------G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~-~~~~~vvlIAGGiGITP~lsil~~l~~ 445 (713)
|..|+.|.+. + .|++|.|.||+|.+.... ...++++|||||+||||++|+++++..
T Consensus 91 ~~~~~~~~~~~~G~~S~~L~~l-~----------~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~ 159 (286)
T cd06208 91 VYTDPETDETKKGVCSNYLCDL-K----------PGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFR 159 (286)
T ss_pred EEecCCCCceeccchHHHHhhC-C----------CCCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHH
Confidence 7788888763 2 578999999999875322 234689999999999999999999876
Q ss_pred hhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHH--Hh--cc
Q 005126 446 AQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVR--AV--RF 521 (713)
Q Consensus 446 ~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~--~~--~~ 521 (713)
... ......+++.|+|++|+.+++.+.+++.+ +.+. ...+++++..++++++.+.+.++++++..... .+ ..
T Consensus 160 ~~~-~~~~~~~~v~L~~g~r~~~d~~~~~el~~-l~~~--~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l 235 (286)
T cd06208 160 EKH-ADYKFTGLAWLFFGVPNSDSLLYDDELEK-YPKQ--YPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLL 235 (286)
T ss_pred hhh-cccCCCCCEEEEEEecCccchhHHHHHHH-HHHh--CCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHH
Confidence 521 01112467999999999999888777654 3221 12368888889987654444445554433221 11 11
Q ss_pred C-CCCeeEEcCcchHHHHHHHH
Q 005126 522 G-TQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 522 ~-~~~~~~vcGp~~~~~~a~~~ 542 (713)
. ++..+|+|||++|+....-.
T Consensus 236 ~~~~~~vYiCGp~~m~~~v~~~ 257 (286)
T cd06208 236 DKDNTHVYICGLKGMEPGVDDA 257 (286)
T ss_pred hcCCcEEEEeCCchHHHHHHHH
Confidence 2 33589999999999877554
No 47
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.90 E-value=2.1e-22 Score=210.72 Aligned_cols=200 Identities=15% Similarity=0.214 Sum_probs=145.0
Q ss_pred eeEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHh
Q 005126 312 TCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 391 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~ 391 (713)
..+++....+++++.++++.+ ..++||||+.|.+|.. ..||||+++. +++.++|+||..|+.|..|.+ ++
T Consensus 8 ~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~---~~~pySi~~~---~~~~l~~~Vk~~G~~S~~L~~-l~- 77 (261)
T TIGR02911 8 SEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKY---GEAPISVSGI---GEGYIDLTIRRVGKVTDEVFT-LK- 77 (261)
T ss_pred EEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCC---CccceecCCC---CCCeEEEEEEeCchhhHHHHc-CC-
Confidence 456666667888888888763 6799999999999864 3589999874 357899999999999998864 22
Q ss_pred cccCCCCCCcceeEEEECCCCC-CCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 005126 392 ELDSDADQMRCIPVAIEGPYGP-ATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 470 (713)
Q Consensus 392 ~~~~~~~~~~~~~v~VeGPYG~-~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l 470 (713)
.|+.+.|+||||. +..+....++++|||||+||||++++++++.++. ...++++|+|++|+.+|+
T Consensus 78 ---------~Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~-----~~~~~v~L~~~~r~~~~~ 143 (261)
T TIGR02911 78 ---------EGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNP-----KEIKSLNLILGFKTPDDI 143 (261)
T ss_pred ---------CCCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCc-----ccCceEEEEEecCCHHHh
Confidence 5788999999998 4333334679999999999999999999987642 123689999999999999
Q ss_pred hhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 471 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 471 ~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+.+++.+.. + +.++ +..+.++++.+....|++++..........++..+|+|||++|+..+.-.
T Consensus 144 ~~~~eL~~l~-~----~~~~--~~~~~~~~~~~~~~~g~v~~~l~~~~~~~~~~~~v~lCGp~~mv~~~~~~ 208 (261)
T TIGR02911 144 LFKEDIAEWK-G----NINL--TLTLDEAEEDYKGNIGLVTKYIPELTLKDIEEVQAIVVGPPIMMKFTVQE 208 (261)
T ss_pred hHHHHHHHHH-h----cCcE--EEEEcCCCCCCcCCeeccCHhHHhccCCCccceEEEEECCHHHHHHHHHH
Confidence 8888876532 2 1233 33444444444445566664332211222234679999999999887543
No 48
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.90 E-value=1.9e-22 Score=215.09 Aligned_cols=206 Identities=18% Similarity=0.261 Sum_probs=154.5
Q ss_pred eeEEEEEEecCCeEEEEEecCC---CCccCCCeEEEEeCCCCC----CcceeeeeeeeCCCCCCCcEEEEEEeC------
Q 005126 312 TCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSIS----KFQWHSFSITSSSSVDDQTMSLIVKCD------ 378 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~---~~~~~pGQ~v~L~~P~~s----~~q~HPFTIaS~p~~~~~~l~~~Ik~~------ 378 (713)
..+++.+.+++++..+++..+. ...|+||||+.|.++... ....||||++|.|. +++.++|+||..
T Consensus 36 ~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~ 114 (300)
T PTZ00319 36 FKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVHP 114 (300)
T ss_pred EEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCCC
Confidence 4567777888999888886532 367999999999997432 14689999999875 677899999975
Q ss_pred -----CchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCc---------------CCCCeEEEEEecCChhhHHH
Q 005126 379 -----GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF---------------LRYDSLLLVAGGIGITPFLS 438 (713)
Q Consensus 379 -----G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~---------------~~~~~vvlIAGGiGITP~ls 438 (713)
|..|+.|.+ ++ +|+.+.|+||+|.+..+- .+.++++|||||+||||+++
T Consensus 115 ~~~~~G~~S~~L~~-l~----------~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~s 183 (300)
T PTZ00319 115 SFPNGGRLSQHLYH-MK----------LGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQ 183 (300)
T ss_pred CCCCCCChhhhhhc-CC----------CCCEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHH
Confidence 888988843 22 588999999999863211 12358999999999999999
Q ss_pred HHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCC-CCccchhhhccchhHHH
Q 005126 439 ILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE-QSSVTVREVLNDLSLVR 517 (713)
Q Consensus 439 il~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~-~~~~~~~g~~~~~~~~~ 517 (713)
+++++..+. ...++++|+|++|+.+++.+.+++.+ +. +..+++++..+++++ ..+.+..|++++..+.+
T Consensus 184 ml~~l~~~~-----~~~~~i~liyg~r~~~dl~~~~eL~~-~~----~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~ 253 (300)
T PTZ00319 184 IIHAIKKNK-----EDRTKVFLVYANQTEDDILLRKELDE-AA----KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRA 253 (300)
T ss_pred HHHHHHhCC-----CCCceEEEEEecCCHHHhhHHHHHHH-Hh----hCCCEEEEEEECCCCCCCcccccceeCHHHHHh
Confidence 999988642 12358999999999999999888765 32 234788888888753 33444678888765555
Q ss_pred HhccC-------CCCeeEEcCcchHHHHH
Q 005126 518 AVRFG-------TQSNYAVNGLESLIWMA 539 (713)
Q Consensus 518 ~~~~~-------~~~~~~vcGp~~~~~~a 539 (713)
.+... ++..+|+|||++|+..+
T Consensus 254 ~~~~~~~~~~~~~~~~vyiCGp~~mv~~~ 282 (300)
T PTZ00319 254 HLPVPDPQNSGIKKVMALMCGPPPMLQMA 282 (300)
T ss_pred hcCCccccccccCCeEEEEECCHHHHHHH
Confidence 44321 23579999999999865
No 49
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.90 E-value=2.9e-22 Score=208.73 Aligned_cols=203 Identities=22% Similarity=0.318 Sum_probs=156.7
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCC--ccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHH
Q 005126 311 ETCILSARVFPSKAIELILPKHAGL--KFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLY 386 (713)
Q Consensus 311 ~~~ivs~~~l~~~~v~l~l~~~~~~--~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~ 386 (713)
...+.+++..++++..+++..+.+. .|+||||+.|.+|..+....+.|||+|+|. +++.+.|.||+. |..|+.|+
T Consensus 7 ~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~-~~~~~~isVk~~~~G~~S~~Lh 85 (266)
T COG1018 7 RVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPD-EDSLYRISVKREDGGGGSNWLH 85 (266)
T ss_pred EEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCC-CCceEEEEEEEeCCCcccHHHH
Confidence 3567788888999999999998877 499999999999987778999999999997 456899999984 89999999
Q ss_pred HHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 005126 387 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 466 (713)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~ 466 (713)
+.++ +|+.+.|.+|.|.+..+....++++|+||||||||++||++++...+ . .++.|++++|+
T Consensus 86 ~~lk----------~Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~------~-~~v~l~h~~R~ 148 (266)
T COG1018 86 DHLK----------VGDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG------P-ADVVLVHAART 148 (266)
T ss_pred hcCC----------CCCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC------C-CCEEEEEecCC
Confidence 8765 68999999999999877656668999999999999999999988753 3 77999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHH
Q 005126 467 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 541 (713)
Q Consensus 467 ~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~ 541 (713)
.+++.+.++ .....+.. ....+..+..+ ....++++...+.....+.. ..+|+|||.+||.....
T Consensus 149 ~~~~af~de-~~l~~~~~---~~~~~~~~~~~-----~~~~g~~~~~~l~~~~~~~~-r~~y~CGp~~fm~av~~ 213 (266)
T COG1018 149 PADLAFRDE-LELAAELP---NALLLGLYTER-----GKLQGRIDVSRLLSAAPDGG-REVYLCGPGPFMQAVRL 213 (266)
T ss_pred hhhcchhhH-HHHHhhCC---CCeeEEEEEec-----CCccccccHHHHhccCCCCC-CEEEEECCHHHHHHHHH
Confidence 999999987 44333221 12344444431 11233344332222222222 78999999999987754
No 50
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.89 E-value=5.4e-22 Score=208.17 Aligned_cols=203 Identities=19% Similarity=0.182 Sum_probs=146.8
Q ss_pred cCCeEEEEEecC--CCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC-----------CchhHHHHH
Q 005126 321 PSKAIELILPKH--AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD-----------GEWTSSLYQ 387 (713)
Q Consensus 321 ~~~~v~l~l~~~--~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~-----------G~~T~~L~~ 387 (713)
+.++.++++..+ ....|.||||+.|.+|. ....|||||+|.|+.+++.++|+||.. |..|+.|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 467888999877 57899999999999875 446899999999864467899999985 778988865
Q ss_pred HHHhcccCCCCCCcceeEEEECCCC-CCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 005126 388 MIHAELDSDADQMRCIPVAIEGPYG-PATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 466 (713)
Q Consensus 388 ~~~~~~~~~~~~~~~~~v~VeGPYG-~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~ 466 (713)
++ .|+.+.+.||+| .+..+-...+++||||||+||||++|+++++.....+ .....++.|+|++|+
T Consensus 92 -lk----------~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~--~~~~~~v~l~~g~r~ 158 (267)
T cd06182 92 -LQ----------LGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRAN--GKARGPAWLFFGCRN 158 (267)
T ss_pred -CC----------CCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhc--cccCCCEEEEEeCCC
Confidence 22 578999999999 7765444468999999999999999999998863100 112467999999999
Q ss_pred c-chhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCC-ccchhhhccchhHHHHhccCCCCeeEEcCcch-HHHHHHHH
Q 005126 467 S-QEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQS-SVTVREVLNDLSLVRAVRFGTQSNYAVNGLES-LIWMAALV 542 (713)
Q Consensus 467 ~-~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~-~~~~a~~~ 542 (713)
. +|+.+.+++.+... +..+++++..+++++.. ....++.+.+....-.....++..+|+|||++ |+....-.
T Consensus 159 ~~~d~~~~del~~~~~----~~~~~~~~~~~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp~~~m~~~v~~~ 233 (267)
T cd06182 159 FASDYLYREELQEALK----DGALTRLDVAFSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGDAKSMAKDVEDA 233 (267)
T ss_pred CcccccHHHHHHHHHh----CCCcceEEEEEccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECCcccchHHHHHH
Confidence 9 89988777654332 33578888888876543 11122222111100000122345899999999 99887554
No 51
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.89 E-value=3.5e-22 Score=222.13 Aligned_cols=210 Identities=15% Similarity=0.227 Sum_probs=157.2
Q ss_pred ceeEEEEEEecCCeEEEEEecC--CCCccCCCeEEEEeCCCC-----------------------------CCcceeeee
Q 005126 311 ETCILSARVFPSKAIELILPKH--AGLKFTPTSVIFMKIPSI-----------------------------SKFQWHSFS 359 (713)
Q Consensus 311 ~~~ivs~~~l~~~~v~l~l~~~--~~~~~~pGQ~v~L~~P~~-----------------------------s~~q~HPFT 359 (713)
...+++.+.+++++.++++..+ .+..|+||||+.|.+|.. .....||||
T Consensus 135 ~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~yS 214 (409)
T PRK05464 135 ECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYS 214 (409)
T ss_pred EEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeec
Confidence 3456677778889988888775 357899999999999842 123579999
Q ss_pred eeeCCCCCCCcEEEEEEe-----------CCchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEE
Q 005126 360 ITSSSSVDDQTMSLIVKC-----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVA 428 (713)
Q Consensus 360 IaS~p~~~~~~l~~~Ik~-----------~G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIA 428 (713)
|+|.|. +++.++|+||. .|..|+.|++ ++ +|+++.|+||+|.+..+ ...++++|||
T Consensus 215 ias~p~-~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~f~~~-~~~~~ivlIA 281 (409)
T PRK05464 215 MANYPE-EKGIIMLNVRIATPPPGNPDVPPGIMSSYIFS-LK----------PGDKVTISGPFGEFFAK-DTDAEMVFIG 281 (409)
T ss_pred cCCCCC-CCCeEEEEEEEeecCCCcCCCCCCchhhHHHh-CC----------CCCEEEEEccccCcEec-CCCceEEEEE
Confidence 999986 56689999995 4888999875 22 57899999999998643 4568999999
Q ss_pred ecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCC--Cccch
Q 005126 429 GGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ--SSVTV 506 (713)
Q Consensus 429 GGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~--~~~~~ 506 (713)
||+||||++|++++++.+.. ..++++|+|++|+.+++.+.+++.+ +.+ +..++++++.+++++. .+.+.
T Consensus 282 gGtGIaP~~sml~~~l~~~~-----~~~~v~L~~g~r~~~d~~~~~el~~-l~~---~~~~~~~~~~~s~~~~~~~~~g~ 352 (409)
T PRK05464 282 GGAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYVEDFDQ-LAA---ENPNFKWHVALSDPLPEDNWTGY 352 (409)
T ss_pred eccChhHHHHHHHHHHhCCC-----CCceEEEEEecCCHHHhhHHHHHHH-HHH---hCCCeEEEEEEcCCCCCCCCCCc
Confidence 99999999999998876421 2368999999999999988888754 322 2357888888887543 23345
Q ss_pred hhhccchhHHHHhc---cCCCCeeEEcCcchHHHHHHHH
Q 005126 507 REVLNDLSLVRAVR---FGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 507 ~g~~~~~~~~~~~~---~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+|++++....+... ..++..+|+|||++|+..+.-.
T Consensus 353 ~G~v~~~l~~~~l~~~~~~~~~~vyiCGP~~m~~av~~~ 391 (409)
T PRK05464 353 TGFIHNVLYENYLKDHEAPEDCEYYMCGPPMMNAAVIKM 391 (409)
T ss_pred cceeCHHHHHhhhhhcCCCCCeEEEEECCHHHHHHHHHH
Confidence 67776544333221 1234679999999999887543
No 52
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.89 E-value=7.4e-22 Score=204.75 Aligned_cols=196 Identities=15% Similarity=0.102 Sum_probs=140.1
Q ss_pred CeEEEEEecC-CCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC-------CchhHHHHHHHHhccc
Q 005126 323 KAIELILPKH-AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD-------GEWTSSLYQMIHAELD 394 (713)
Q Consensus 323 ~~v~l~l~~~-~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~-------G~~T~~L~~~~~~~~~ 394 (713)
++.++++..+ +..+|+||||+.|.++. ....|||||+|+|. ++.++|+||.. |..|+.|.+.++
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~--~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~~---- 88 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPA--DGALELLVRQVRHADGGLGLGSGWLTRHAP---- 88 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCC--CCEEEEEEEEeccCCCCCeeechhhhhCCC----
Confidence 5788888876 57899999999999764 45789999999984 56899999985 448888877543
Q ss_pred CCCCCCcceeEEEECCCC-CCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc-hhhh
Q 005126 395 SDADQMRCIPVAIEGPYG-PATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ-EICL 472 (713)
Q Consensus 395 ~~~~~~~~~~v~VeGPYG-~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~-~l~~ 472 (713)
+|.++.+.||.| .+..+ ...+++||||||+||||++|+++++...+ .+++.+++++|+.+ |+.+
T Consensus 89 ------~Gd~v~i~gp~gg~F~~~-~~~~~~vlIAgGtGIaP~~s~l~~~~~~~-------~~~~~l~~g~r~~~~d~~~ 154 (245)
T cd06200 89 ------IGASVALRLRENPGFHLP-DDGRPLILIGNGTGLAGLRSHLRARARAG-------RHRNWLLFGERQAAHDFFC 154 (245)
T ss_pred ------CCCEEEEEecCCCcccCC-CCCCCEEEEecCcChHHHHHHHHHHHhcc-------CCCeEEEEecCCccccHhH
Confidence 578999999876 45432 24578999999999999999999987642 25689999999984 8877
Q ss_pred HHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcc-hHHHHHHHHHH
Q 005126 473 LNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLE-SLIWMAALVGI 544 (713)
Q Consensus 473 ~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~-~~~~~a~~~~~ 544 (713)
.+++.+... +..+.++++.+++++++....++.+.+....-.....++..+|+|||+ +|+....-.+.
T Consensus 155 ~~el~~~~~----~~~~~~~~~~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~ 223 (245)
T cd06200 155 REELEAWQA----AGHLARLDLAFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLD 223 (245)
T ss_pred HHHHHHHHH----CCCcceEEEEEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHH
Confidence 777755332 234667778888775433333333322111000011234689999999 99988765433
No 53
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.89 E-value=4e-22 Score=205.23 Aligned_cols=184 Identities=21% Similarity=0.350 Sum_probs=138.9
Q ss_pred eEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHhc
Q 005126 313 CILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAE 392 (713)
Q Consensus 313 ~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~~ 392 (713)
++++.+.+++++.+++++.+ .+|+||||+.|..|.. ..|||||+|.| +.++|+||..|.+|++|.+ ++
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~----~~l~~~v~~~G~~s~~L~~-l~-- 69 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID----GPNSITVKKVGEATSALHD-LK-- 69 (233)
T ss_pred EEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC----CeEEEEEEecChHHHHHHh-cC--
Confidence 46677888999999999863 5899999999999864 35999999986 5899999999999999986 33
Q ss_pred ccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhh
Q 005126 393 LDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICL 472 (713)
Q Consensus 393 ~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~ 472 (713)
.|+.+.++||||.+. ... ++++++||||+||||++|+++++..+ ++++++|++|+.+|+.+
T Consensus 70 --------~Gd~v~i~gP~G~~f-~~~-~~~~vliAgGtGitP~~sil~~~~~~---------~~i~l~~~~r~~~d~~~ 130 (233)
T cd06220 70 --------EGDKLGIRGPYGNGF-ELV-GGKVLLIGGGIGIAPLAPLAERLKKA---------ADVTVLLGARTKEELLF 130 (233)
T ss_pred --------CCCEEEEECcCCCCc-cCC-CCeEEEEecCcChHHHHHHHHHHHhc---------CCEEEEEecCChHHChh
Confidence 578899999999732 222 78999999999999999999998752 57999999999999988
Q ss_pred HHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 473 LNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 473 ~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+++.+ . . ++ .+ .+ ++ .+...++++++.. .+.. ..+...+|+|||++|+.++.-.
T Consensus 131 ~~eL~~-~-----~--~~--~~-~~-~~-~~~~~~g~~~~~l-~~~~-~~~~~~vyicGp~~m~~~~~~~ 185 (233)
T cd06220 131 LDRLRK-S-----D--EL--IV-TT-DD-GSYGFKGFVTDLL-KELD-LEEYDAIYVCGPEIMMYKVLEI 185 (233)
T ss_pred HHHHhh-C-----C--cE--EE-EE-eC-CCCcccceehHHH-hhhc-ccCCCEEEEECCHHHHHHHHHH
Confidence 777643 1 1 11 21 22 22 2233456665532 2222 2233579999999999887554
No 54
>PRK05713 hypothetical protein; Provisional
Probab=99.89 E-value=4.6e-22 Score=213.56 Aligned_cols=196 Identities=15% Similarity=0.212 Sum_probs=144.5
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEe--CCchhHHHHHH
Q 005126 311 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLYQM 388 (713)
Q Consensus 311 ~~~ivs~~~l~~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~--~G~~T~~L~~~ 388 (713)
...+++.+.+++++.+++++.+..+.|+||||+.|.+|.. .+|||||+|.|. +++.++|+||. .|.+|+.|.+
T Consensus 93 ~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~~---~~R~ySias~p~-~~~~l~~~I~~~~~G~~s~~l~~- 167 (312)
T PRK05713 93 PARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAGG---VARPYSLASLPG-EDPFLEFHIDCSRPGAFCDAARQ- 167 (312)
T ss_pred CeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCCC---cccccccCcCCC-CCCeEEEEEEEcCCCccchhhhc-
Confidence 3567788888999999999876678999999999998742 589999999885 56789999984 6778987732
Q ss_pred HHhcccCCCCCCcceeEEEECCCCCC-CCCcC-CCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 005126 389 IHAELDSDADQMRCIPVAIEGPYGPA-TMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 466 (713)
Q Consensus 389 ~~~~~~~~~~~~~~~~v~VeGPYG~~-~~~~~-~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~ 466 (713)
++ .|+++.+.||+|.. ..+.. ..+++||||||+||||++|+++++.+++ ..++++|+|++|+
T Consensus 168 l~----------~Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~------~~~~v~l~~g~r~ 231 (312)
T PRK05713 168 LQ----------VGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG------HQGPIRLLHLARD 231 (312)
T ss_pred CC----------CCCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC------CCCcEEEEEEcCc
Confidence 22 57899999999853 22222 3578999999999999999999987652 2367999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 467 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 467 ~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+|+.+.+++.+ +.+ +..++++....+++- ...+. +.........+|+|||++|+.++.-.
T Consensus 232 ~~d~~~~~el~~-l~~---~~~~~~~~~~~~~~~------~~~l~-----~~~~~~~~~~vyiCGp~~mv~~~~~~ 292 (312)
T PRK05713 232 SAGHYLAEPLAA-LAG---RHPQLSVELVTAAQL------PAALA-----ELRLVSRQTMALLCGSPASVERFARR 292 (312)
T ss_pred hHHhhhHHHHHH-HHH---HCCCcEEEEEECcch------hhhhh-----hccCCCCCeEEEEeCCHHHHHHHHHH
Confidence 999988887754 322 224677776554321 11111 11111233679999999999987553
No 55
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.89 E-value=1.3e-21 Score=212.21 Aligned_cols=206 Identities=17% Similarity=0.242 Sum_probs=149.9
Q ss_pred CCeEEEEEecCCCCccCCCeEEEEeCCCC----CCcceeeeeeeeCCCC---CCCcEEEEEEe-----------CCchhH
Q 005126 322 SKAIELILPKHAGLKFTPTSVIFMKIPSI----SKFQWHSFSITSSSSV---DDQTMSLIVKC-----------DGEWTS 383 (713)
Q Consensus 322 ~~~v~l~l~~~~~~~~~pGQ~v~L~~P~~----s~~q~HPFTIaS~p~~---~~~~l~~~Ik~-----------~G~~T~ 383 (713)
+++.++++..+..+.|.||||+.|..|.. .+...|||||+|+|.. ++++++|+||. .|..|+
T Consensus 108 ~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~ 187 (367)
T PLN03115 108 GETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSN 187 (367)
T ss_pred CceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHh
Confidence 47889999877778999999999998743 2345799999999742 24689999995 377888
Q ss_pred HHHHHHHhcccCCCCCCcceeEEEECCCCCCCC-CcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEE
Q 005126 384 SLYQMIHAELDSDADQMRCIPVAIEGPYGPATM-DFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIY 462 (713)
Q Consensus 384 ~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~-~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw 462 (713)
.|.+ ++ +|+.|.|.||+|.+.. +.....++||||||+||||++|+++++..+... ......++.|+|
T Consensus 188 ~L~~-Lk----------~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~-~~~~~~~v~Lf~ 255 (367)
T PLN03115 188 FLCD-LK----------PGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHD-DYKFNGLAWLFL 255 (367)
T ss_pred hHhh-CC----------CcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccc-cccCCCcEEEEE
Confidence 8876 33 5889999999998642 223345899999999999999999987654211 111235799999
Q ss_pred EeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHH--Hhc--c-CCCCeeEEcCcchHHH
Q 005126 463 VIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVR--AVR--F-GTQSNYAVNGLESLIW 537 (713)
Q Consensus 463 ~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~--~~~--~-~~~~~~~vcGp~~~~~ 537 (713)
++|+.+|+.+.+++.+... . ...+++++..++|+++.+.+.++++++..... .+. + .++..+|+|||++|+.
T Consensus 256 G~R~~~dlly~dELe~l~~-~--~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp~~M~~ 332 (367)
T PLN03115 256 GVPTSSSLLYKEEFEKMKE-K--APENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLKGMEK 332 (367)
T ss_pred ccCCHHHhhHHHHHHHHHH-h--CCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCCHHHHH
Confidence 9999999988888765322 1 12478999999998876655566665533321 111 2 2346899999999987
Q ss_pred HHHHH
Q 005126 538 MAALV 542 (713)
Q Consensus 538 ~a~~~ 542 (713)
...-+
T Consensus 333 ~V~~~ 337 (367)
T PLN03115 333 GIDDI 337 (367)
T ss_pred HHHHH
Confidence 65443
No 56
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.89 E-value=5.3e-22 Score=220.41 Aligned_cols=209 Identities=14% Similarity=0.221 Sum_probs=155.1
Q ss_pred eeEEEEEEecCCeEEEEEecC--CCCccCCCeEEEEeCCCC-----------------------------CCcceeeeee
Q 005126 312 TCILSARVFPSKAIELILPKH--AGLKFTPTSVIFMKIPSI-----------------------------SKFQWHSFSI 360 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~--~~~~~~pGQ~v~L~~P~~-----------------------------s~~q~HPFTI 360 (713)
..+++.+.+++++.++++..+ .+..|+||||+.|.+|.. ....+|||||
T Consensus 132 ~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySi 211 (405)
T TIGR01941 132 CEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYSM 211 (405)
T ss_pred eEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeecC
Confidence 456666677888888888765 346899999999999742 1235699999
Q ss_pred eeCCCCCCCcEEEEEEe-----------CCchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEe
Q 005126 361 TSSSSVDDQTMSLIVKC-----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAG 429 (713)
Q Consensus 361 aS~p~~~~~~l~~~Ik~-----------~G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAG 429 (713)
+|.|. +++.++|+||. .|..|+.|.+ ++ +|+++.|+||+|.+... ...++++||||
T Consensus 212 as~p~-~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~i~gP~G~f~l~-~~~~~lvlIAg 278 (405)
T TIGR01941 212 ANYPA-EKGIIKLNVRIATPPFINSDIPPGIMSSYIFS-LK----------PGDKVTISGPFGEFFAK-DTDAEMVFIGG 278 (405)
T ss_pred CCCCC-CCCeEEEEEEEeccCcccCCCCCCcHHHHHhc-CC----------CcCEEEEEeccCCCeec-CCCCCEEEEec
Confidence 99986 56789999996 3889998875 32 58899999999998643 34578999999
Q ss_pred cCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCC--Cccchh
Q 005126 430 GIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ--SSVTVR 507 (713)
Q Consensus 430 GiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~--~~~~~~ 507 (713)
|+||||++|++++++.+.. ..++++++|++|+.+++.+.+++.+ +.+ +..++++++.+++++. .+.+.+
T Consensus 279 GtGIaP~lsmi~~~l~~~~-----~~~~v~l~~g~R~~~dl~~~~el~~-l~~---~~~~~~~~~~~s~~~~~~~~~g~~ 349 (405)
T TIGR01941 279 GAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYQEDFDQ-LEA---ENPNFVWHVALSDPQPEDNWTGYT 349 (405)
T ss_pred CcCcchHHHHHHHHHhcCC-----CCCeEEEEEecCCHHHHhHHHHHHH-HHH---hCCCeEEEEEeCCCCccCCCCCcc
Confidence 9999999999998775421 2467999999999999988888754 322 3357888888886542 334456
Q ss_pred hhccchhHHHHhc---cCCCCeeEEcCcchHHHHHHHH
Q 005126 508 EVLNDLSLVRAVR---FGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 508 g~~~~~~~~~~~~---~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
|++.+....+... ..++..+|+|||++|++...-.
T Consensus 350 G~v~~~l~~~~l~~~~~~~~~~vylCGP~~m~~av~~~ 387 (405)
T TIGR01941 350 GFIHNVLYENYLKDHDAPEDCEFYMCGPPMMNAAVIKM 387 (405)
T ss_pred ceeCHHHHHhhhcccCCCCCeEEEEeCCHHHHHHHHHH
Confidence 6666543322221 2234679999999999877543
No 57
>PRK05802 hypothetical protein; Provisional
Probab=99.88 E-value=3.3e-21 Score=206.78 Aligned_cols=197 Identities=14% Similarity=0.203 Sum_probs=141.5
Q ss_pred eeEEEEEEecCCeEEEEEecCCC---CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHH
Q 005126 312 TCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQM 388 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~---~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~ 388 (713)
..+++.+.+++++.++++..|.. ..++||||++|++|..+.+..|||||+++|. +++.+++.||..|..|+.|.+.
T Consensus 67 ~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~-~~g~l~l~ik~~G~~T~~L~~l 145 (320)
T PRK05802 67 CKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADT-EENIIKVAIEIRGVKTKKIAKL 145 (320)
T ss_pred EEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCC-CCCEEEEEEEecChhHHHHhcC
Confidence 56778888899999999986643 3479999999999865566789999999875 5678999999999999999642
Q ss_pred HHhcccCCCCCCcceeEEEECCCCCC--CCC---cCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEE
Q 005126 389 IHAELDSDADQMRCIPVAIEGPYGPA--TMD---FLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 463 (713)
Q Consensus 389 ~~~~~~~~~~~~~~~~v~VeGPYG~~--~~~---~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~ 463 (713)
+ +|+++.|.||||+. ..+ ....+++++||||+||||++++++++.+++ .+++++|+
T Consensus 146 -~----------~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~--------~~v~li~g 206 (320)
T PRK05802 146 -N----------KGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG--------NKIIVIID 206 (320)
T ss_pred -C----------CCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC--------CcEEEEEe
Confidence 2 57889999999753 221 123568999999999999999999997642 47999999
Q ss_pred eCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCc-cchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 464 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS-VTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 464 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+|+.+++.+.+++.+ +.. ++....+.+++.. ...++.+.+. +...+...+|+|||+.|+....-.
T Consensus 207 ~r~~~~~~~~~el~~-~~~--------~~~~~~~~ddG~~~~~~~g~v~~~-----l~~~~~~~vy~CGP~~M~k~v~~~ 272 (320)
T PRK05802 207 KGPFKNNFIKEYLEL-YNI--------EIIELNLLDDGELSEEGKDILKEI-----IKKEDINLIHCGGSDILHYKIIEY 272 (320)
T ss_pred CCCHHHHHHHHHHHH-hhC--------ceEEEEecccCCCCccccchHHHH-----hcCCCCCEEEEECCHHHHHHHHHH
Confidence 999999977776543 211 1122211122211 1123333322 111123679999999999877543
No 58
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.87 E-value=5.8e-21 Score=193.28 Aligned_cols=186 Identities=19% Similarity=0.251 Sum_probs=135.8
Q ss_pred EEEEecCCeEEEEEecCCC---CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCC---chhHHHHHHH
Q 005126 316 SARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDG---EWTSSLYQMI 389 (713)
Q Consensus 316 s~~~l~~~~v~l~l~~~~~---~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G---~~T~~L~~~~ 389 (713)
+.+.+.++++++++..+.. ..|+||||+.|++|. .+.|||||+|.|. +++.++|+||..+ +.|..|.+.+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~-~~~~l~~~v~~~~~g~~~s~~l~~~~ 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPA-DRDRYRIAVLREPASRGGSRYMHELL 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCC-CCCEEEEEEEeccCCCchHHHHHhcC
Confidence 3456788999999988765 389999999999986 3679999999875 5578999999843 3687776643
Q ss_pred HhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcch
Q 005126 390 HAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 469 (713)
Q Consensus 390 ~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~ 469 (713)
+ +|+++.++||||.+..+ ...+++++||||+||||++++++++... .++++++|++|+.++
T Consensus 78 ~----------~Gd~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~--------~~~v~l~~~~r~~~~ 138 (211)
T cd06185 78 R----------VGDELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR--------GADFELHYAGRSRED 138 (211)
T ss_pred C----------CCCEEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC--------CCCEEEEEEeCCCcc
Confidence 2 47889999999987543 2457999999999999999999998653 257999999999999
Q ss_pred hhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhc-cCCCCeeEEcCcchHHHHHHHH
Q 005126 470 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVR-FGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 470 l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
+.+.+++.+.. ..+ ++++.+++.+. . .+ .+.+. ..+...+|+|||+.|++...-.
T Consensus 139 ~~~~~~l~~~~------~~~--~~~~~~~~~~~-~----~~-----~~~~~~~~~~~~vyicGp~~m~~~~~~~ 194 (211)
T cd06185 139 AAFLDELAALP------GDR--VHLHFDDEGGR-L----DL-----AALLAAPPAGTHVYVCGPEGMMDAVRAA 194 (211)
T ss_pred hhHHHHHhhhc------CCc--EEEEECCCCCc-c----CH-----HHHhccCCCCCEEEEECCHHHHHHHHHH
Confidence 88777764321 123 34445543211 1 11 11111 1234689999999999887543
No 59
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.86 E-value=1.3e-21 Score=188.44 Aligned_cols=80 Identities=29% Similarity=0.538 Sum_probs=60.2
Q ss_pred CCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCC
Q 005126 421 YDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE 500 (713)
Q Consensus 421 ~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~ 500 (713)
|+++||||||+||||++|+++++.+... ++....++|+|+|++|+.+++.|+.+++.++...... .++++++|+|++.
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~-~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~-~~~~~~iyvT~~~ 78 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQN-RGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRL-GNVEVHIYVTRES 78 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHH-TT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHH-TSEEEEEEETT--
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhc-cccccccceEEEEeeCchhhhhhhhHHHHHHHHHhcc-ccceEEEEEcCCc
Confidence 7999999999999999999999998754 2334578999999999999999999877766544322 5899999999987
Q ss_pred CC
Q 005126 501 QS 502 (713)
Q Consensus 501 ~~ 502 (713)
..
T Consensus 79 ~~ 80 (156)
T PF08030_consen 79 SA 80 (156)
T ss_dssp --
T ss_pred cc
Confidence 54
No 60
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.86 E-value=2.6e-20 Score=193.03 Aligned_cols=210 Identities=19% Similarity=0.213 Sum_probs=170.2
Q ss_pred eeEEEEEEecCCeEEEEEecC---CCCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEe--CCchhHHHH
Q 005126 312 TCILSARVFPSKAIELILPKH---AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLY 386 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~---~~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~--~G~~T~~L~ 386 (713)
..+++.+.++.|+-.+.+..+ ..+....|||+++..|-.+..-.+|||..|.+. +.+++++.||. .|..|+.|.
T Consensus 54 ~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~-~~g~~~l~VK~Y~~G~mS~~l~ 132 (286)
T KOG0534|consen 54 FRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDD-DKGYFDLVVKVYPKGKMSQHLD 132 (286)
T ss_pred EEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCcc-ccceEEEEEEeccCCcccHHHh
Confidence 345666677788766666554 346788999999999987778899999999876 35799999998 899999987
Q ss_pred HHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 005126 387 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 466 (713)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~ 466 (713)
++ ..|+.|.+.||.|....+...++++.|||||+||||+++++++++... +...++.|+++.++
T Consensus 133 ~L-----------kiGd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~-----~d~tki~lly~N~t 196 (286)
T KOG0534|consen 133 SL-----------KIGDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDP-----EDTTKISLLYANKT 196 (286)
T ss_pred cC-----------CCCCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCC-----CCCcEEEEEEecCC
Confidence 65 258899999999987555556899999999999999999999998752 23688999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCC--CeeEEcCcchHHHHHHH
Q 005126 467 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQ--SNYAVNGLESLIWMAAL 541 (713)
Q Consensus 467 ~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~vcGp~~~~~~a~~ 541 (713)
.+|+.+.+++.+...+ ...+++++.+++++++.|++..|++++..+........+ ..+++|||++|...++.
T Consensus 197 e~DILlr~eL~~la~~---~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m~~~~~~ 270 (286)
T KOG0534|consen 197 EDDILLREELEELASK---YPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPMINGAAQ 270 (286)
T ss_pred ccccchHHHHHHHHhh---CcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHHHhHHHH
Confidence 9999888776654332 223899999999999889999999998887777665444 57899999999986543
No 61
>PLN02252 nitrate reductase [NADPH]
Probab=99.85 E-value=1.7e-20 Score=223.31 Aligned_cols=210 Identities=17% Similarity=0.212 Sum_probs=159.4
Q ss_pred ceeEEEEEEecCCeEEEEEecCCC---CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC---------
Q 005126 311 ETCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--------- 378 (713)
Q Consensus 311 ~~~ivs~~~l~~~~v~l~l~~~~~---~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--------- 378 (713)
...+++.+.++.++.++++..+.+ +.+.||||++|.++..+....||||++|.+. +++.++|+||..
T Consensus 636 ~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~-~~g~lel~VK~~~~~~~~~~p 714 (888)
T PLN02252 636 PCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDD-EVGHFELVIKVYFKNVHPKFP 714 (888)
T ss_pred EEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCC-CCCEEEEEEEEEeccccCccC
Confidence 356777888899999998876543 5789999999998654445689999999885 567899999974
Q ss_pred --CchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCC--------C--cCCCCeEEEEEecCChhhHHHHHHHHHHh
Q 005126 379 --GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATM--------D--FLRYDSLLLVAGGIGITPFLSILQEIASA 446 (713)
Q Consensus 379 --G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~--------~--~~~~~~vvlIAGGiGITP~lsil~~l~~~ 446 (713)
|..|+.|.+ ++ .|..|.|.||+|.+.. + ....++++|||||+||||+++++++++..
T Consensus 715 ~gG~~S~~L~~-L~----------vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~ 783 (888)
T PLN02252 715 NGGLMSQYLDS-LP----------IGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRD 783 (888)
T ss_pred CCCchhhHHhc-CC----------CCCEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhc
Confidence 788888853 22 5788999999998521 1 11347899999999999999999999864
Q ss_pred hccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCC-CCccchhhhccchhHHHHhccC-CC
Q 005126 447 QSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE-QSSVTVREVLNDLSLVRAVRFG-TQ 524 (713)
Q Consensus 447 ~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~-~~~~~~~g~~~~~~~~~~~~~~-~~ 524 (713)
. ...++++|+|++|+.+|+.+.+++.+.. +. ...++++.+.+|++. +.+.+.+|++++..+.+..... ++
T Consensus 784 ~-----~d~t~i~Liyg~Rt~~Dil~~eEL~~la-~~--~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~ 855 (888)
T PLN02252 784 P-----EDKTEMSLVYANRTEDDILLREELDRWA-AE--HPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDE 855 (888)
T ss_pred c-----CCCCcEEEEEEECCHHHhhHHHHHHHHH-Hh--CCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCC
Confidence 2 1246899999999999998888876532 22 124788888888764 4555677888876655554332 34
Q ss_pred CeeEEcCcchHHHHHH
Q 005126 525 SNYAVNGLESLIWMAA 540 (713)
Q Consensus 525 ~~~~vcGp~~~~~~a~ 540 (713)
..+|+|||++|+..++
T Consensus 856 ~~vyiCGPp~Mi~~av 871 (888)
T PLN02252 856 TLALMCGPPPMIEFAC 871 (888)
T ss_pred eEEEEeCCHHHHHHHH
Confidence 6799999999998653
No 62
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.85 E-value=3.2e-20 Score=205.72 Aligned_cols=209 Identities=14% Similarity=0.180 Sum_probs=146.0
Q ss_pred eeEEEEEEec-----CCeEEEEEecCC-CCccCCCeEEEEeCCCC----CCcceeeeeeeeCCCCC---CCcEEEEEEeC
Q 005126 312 TCILSARVFP-----SKAIELILPKHA-GLKFTPTSVIFMKIPSI----SKFQWHSFSITSSSSVD---DQTMSLIVKCD 378 (713)
Q Consensus 312 ~~ivs~~~l~-----~~~v~l~l~~~~-~~~~~pGQ~v~L~~P~~----s~~q~HPFTIaS~p~~~---~~~l~~~Ik~~ 378 (713)
.+++..+.+. +++.++++..+. .+.|+||||+.|.+|.. .+..+|||||+|+|..+ .+.++|+||..
T Consensus 145 a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v 224 (411)
T TIGR03224 145 ATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKRV 224 (411)
T ss_pred EEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEEE
Confidence 5566777673 488888887654 58899999999998852 23467999999986422 14799999974
Q ss_pred ----------CchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCC-CCcCCCCeEEEEEecCChhhHHHHHHHHHHhh
Q 005126 379 ----------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPAT-MDFLRYDSLLLVAGGIGITPFLSILQEIASAQ 447 (713)
Q Consensus 379 ----------G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~-~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~ 447 (713)
|..|+.|.+ ++ +|++|.|.||||.+. .+-....++||||||+||||++|+++++....
T Consensus 225 ~~~~~g~~~~G~~S~~L~~-lk----------~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~ 293 (411)
T TIGR03224 225 TTDHQGNAVRGVASNYLCD-LK----------KGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRR 293 (411)
T ss_pred EecCCCCcCcccchhHHhc-CC----------CcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHh
Confidence 778988877 33 588999999999743 22223468999999999999999999987632
Q ss_pred ccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHH--h---ccC
Q 005126 448 SNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRA--V---RFG 522 (713)
Q Consensus 448 ~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~--~---~~~ 522 (713)
.. ....+++|+|++|+.+|+.+.+++.+.. + ..+++++.++++++. .++++++...... + ...
T Consensus 294 ~~---~~~~~v~L~~G~Rt~~dl~y~~eL~~l~-~-----~~~~~~~~~sr~~~~---~~g~V~d~l~~~~~~v~~ll~~ 361 (411)
T TIGR03224 294 DH---GEGGKLMLFFGARTKEELPYFGPLQKLP-K-----DFIDINFAFSRTPEQ---PKRYVQDAIRERAADVAALLKD 361 (411)
T ss_pred hc---CCCCCEEEEEecCccccchHHHHHHHHH-h-----cCceEEEEeccCCcc---CcccHhhHHHHhHHHHHHHHhc
Confidence 11 1246899999999999999988875422 1 134556666765432 2344443221111 1 112
Q ss_pred CCCeeEEcCcchHHHHHHHHH
Q 005126 523 TQSNYAVNGLESLIWMAALVG 543 (713)
Q Consensus 523 ~~~~~~vcGp~~~~~~a~~~~ 543 (713)
.+..+|+|||++|+..+.-.+
T Consensus 362 ~~~~vYiCGp~~M~~~v~~~L 382 (411)
T TIGR03224 362 PNTYIYICGLKGMEEGVLDAF 382 (411)
T ss_pred CCcEEEEECCHHHHHHHHHHH
Confidence 346799999999988775543
No 63
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.85 E-value=4.2e-20 Score=192.11 Aligned_cols=197 Identities=18% Similarity=0.301 Sum_probs=146.9
Q ss_pred eeEEEEEEecCCeEEEEEecCCC-CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEE--eCCchhHHHHHH
Q 005126 312 TCILSARVFPSKAIELILPKHAG-LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVK--CDGEWTSSLYQM 388 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~-~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik--~~G~~T~~L~~~ 388 (713)
..+.+.+.+++++.++.+..+.. +.++||||+.|..|. ....|||++|.+. +++.++++|+ +.|..|+.+.+.
T Consensus 10 ~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~-~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 10 YKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPD-DKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred cEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCC-cCCcEEEEEEEEeCChHHHHHhhc
Confidence 45778888899998888876544 689999999999998 4889999999986 4565666555 499999999876
Q ss_pred HHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 005126 389 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 468 (713)
Q Consensus 389 ~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~ 468 (713)
. .++.+.++||||.+.......+++++||||+|++|++++++++.+++ ...+|+++|+.|+++
T Consensus 86 k-----------~gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~------~~~~V~~~~G~~~~~ 148 (252)
T COG0543 86 K-----------EGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG------DANKVTLLYGARTAK 148 (252)
T ss_pred c-----------CCCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC------CCceEEEEEeccChh
Confidence 1 36779999999987543333445999999999999999999998752 247899999999999
Q ss_pred hhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHH
Q 005126 469 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 541 (713)
Q Consensus 469 ~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~ 541 (713)
|+.+.+++.+... + ++++.+. +.+.+.+|.+......+.... +...+|+|||+.|+.+..-
T Consensus 149 dl~~~~el~~~~~-----~---~~~~~~~---~~~~G~~G~v~~~~~~~~~~~-~~~~v~~cGp~~M~~~v~~ 209 (252)
T COG0543 149 DLLLLDELEELAE-----K---EVHPVTD---DGWKGRKGFVTTDVLKELLDL-EVDDVYICGPPAMVKAVRE 209 (252)
T ss_pred hcccHHHHHHhhc-----C---cEEEEEC---CCCCccCcceeHHHHhhhccc-cCCEEEEECCHHHHHHHHH
Confidence 9988888754321 1 2333332 334556666633333333222 4478999999999988754
No 64
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.85 E-value=6e-20 Score=194.95 Aligned_cols=202 Identities=13% Similarity=0.118 Sum_probs=139.7
Q ss_pred ceeEEEEEEec----CCeEEEEEecCC-------CCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEe--
Q 005126 311 ETCILSARVFP----SKAIELILPKHA-------GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC-- 377 (713)
Q Consensus 311 ~~~ivs~~~l~----~~~v~l~l~~~~-------~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~-- 377 (713)
...+++.+.++ .++..+++..+. ...|+||||+.|..|+. ...|||||+|.| +++.++|+||.
T Consensus 47 ~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~--~~~R~YSias~p--~~g~l~l~Vk~~~ 122 (289)
T cd06201 47 ALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS--DVPRFYSLASSS--SDGFLEICVRKHP 122 (289)
T ss_pred ceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC--CCCceEecCCCC--CCCeEEEEEEeCC
Confidence 34566666665 588888887654 46799999999986543 357999999987 35789999997
Q ss_pred CCchhHHHHHHHHhcccCCCCCCcceeEEEE-CCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCc
Q 005126 378 DGEWTSSLYQMIHAELDSDADQMRCIPVAIE-GPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPS 456 (713)
Q Consensus 378 ~G~~T~~L~~~~~~~~~~~~~~~~~~~v~Ve-GPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~ 456 (713)
.|..|+.|.+ ++ .|..+.+. +|+|.+..+ ...++++|||||+||||++|++++... .+
T Consensus 123 ~G~~S~~L~~-l~----------~Gd~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~~---------~~ 181 (289)
T cd06201 123 GGLCSGYLHG-LK----------PGDTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANAA---------RR 181 (289)
T ss_pred CccchhhHhh-CC----------CcCEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhhc---------cC
Confidence 7889999875 32 47788887 478877543 445789999999999999999987521 36
Q ss_pred eEEEEEEeCCcc-hhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchH
Q 005126 457 KVQLIYVIKSSQ-EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESL 535 (713)
Q Consensus 457 ~v~Lvw~~r~~~-~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~ 535 (713)
+++|+|++|+.+ |+.+.+++.+.. + +..+++++..++++.. ....++.+.+....-.....++..+|+|||++|
T Consensus 182 ~v~L~~g~r~~~~d~~~~~eL~~l~-~---~~~~~~~~~~~s~~~~-~g~v~~~l~~~~~~l~~~~~~~~~vyiCGp~~M 256 (289)
T cd06201 182 PMHLYWGGRDPASDFLYEDELDQYL-A---DGRLTQLHTAFSRTPD-GAYVQDRLRADAERLRRLIEDGAQIMVCGSRAM 256 (289)
T ss_pred CEEEEEEecCcccchHHHHHHHHHH-H---cCCCceEEEEECCCCC-cccchhHHHHhHHHHHHHHHCCcEEEEECCHHH
Confidence 799999999985 777777765432 2 2235667767776532 222222211110000011123567999999999
Q ss_pred HHHHHHH
Q 005126 536 IWMAALV 542 (713)
Q Consensus 536 ~~~a~~~ 542 (713)
+....-.
T Consensus 257 ~~~v~~~ 263 (289)
T cd06201 257 AQGVAAV 263 (289)
T ss_pred HHHHHHH
Confidence 9877554
No 65
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.81 E-value=8.1e-19 Score=209.50 Aligned_cols=194 Identities=18% Similarity=0.316 Sum_probs=145.3
Q ss_pred eEEEEEEecCCeEEEEEecCC-CCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHh
Q 005126 313 CILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 391 (713)
Q Consensus 313 ~ivs~~~l~~~~v~l~l~~~~-~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~ 391 (713)
.+++.+.+++++..+++..+. ...++||||+.|+++..+ +.|||||+|.+. +++.++|+||..|..|+.|.++ +
T Consensus 3 ~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~-~~g~i~~~vk~vG~~T~~L~~l-~- 77 (752)
T PRK12778 3 KIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADP-EKGTITLVIQEVGLSTTKLCEL-N- 77 (752)
T ss_pred EEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCC-CCCEEEEEEEEcCchHHHHhcC-C-
Confidence 466777788999999997654 357999999999997543 579999999875 5678999999999999999753 2
Q ss_pred cccCCCCCCcceeE-EEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 005126 392 ELDSDADQMRCIPV-AIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 470 (713)
Q Consensus 392 ~~~~~~~~~~~~~v-~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l 470 (713)
+|+.+ .|.||||.+.. ....++++|||||+||||++++++++..++ .+++++|+.|+.+++
T Consensus 78 ---------~Gd~v~~v~GP~G~~~~-~~~~~~~llvaGG~GiaPl~~l~~~l~~~~--------~~v~l~~g~r~~~~l 139 (752)
T PRK12778 78 ---------EGDYITDVVGPLGNPSE-IENYGTVVCAGGGVGVAPMLPIVKALKAAG--------NRVITILGGRSKELI 139 (752)
T ss_pred ---------CCCEeCeEeCCCCCCcc-CCCCCeEEEEECCEeHHHHHHHHHHHHHCC--------CeEEEEeccCCHHHh
Confidence 57889 79999998753 334579999999999999999999987642 479999999999999
Q ss_pred hhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccC-CCCeeEEcCcchHHHHHHHH
Q 005126 471 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFG-TQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 471 ~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+.+++.+ +. + + ++++.++ .+.+.+|++++. +.+..... +...+|+|||++|+....-.
T Consensus 140 ~~~~el~~-~~----~--~----~~~~t~d-g~~g~~G~v~~~-l~~~~~~~~~~~~vy~CGP~~M~~~v~~~ 199 (752)
T PRK12778 140 ILEDEMRE-SS----D--E----VIIMTDD-GSYGRKGLVTDG-LEEVIKRETKVDKVFAIGPAIMMKFVCLL 199 (752)
T ss_pred hhHHHHHh-hc----C--e----EEEEECC-CCCCCcccHHHH-HHHHhhcCCCCCEEEEECCHHHHHHHHHH
Confidence 88887654 21 1 1 1233232 234456666653 22222222 23579999999999877654
No 66
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.79 E-value=2.1e-18 Score=177.78 Aligned_cols=189 Identities=11% Similarity=0.085 Sum_probs=134.8
Q ss_pred EEEEEecCCeEEEEEecCCC---CccCCCeEEEEeCCCCC-------------------CcceeeeeeeeCCCCCCCcEE
Q 005126 315 LSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSIS-------------------KFQWHSFSITSSSSVDDQTMS 372 (713)
Q Consensus 315 vs~~~l~~~~v~l~l~~~~~---~~~~pGQ~v~L~~P~~s-------------------~~q~HPFTIaS~p~~~~~~l~ 372 (713)
++.+.+++++.++++..+.. ..+.||||+.|.+|..+ ....|+||+++.+. ++++++
T Consensus 2 ~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~-~~~~l~ 80 (235)
T cd06193 2 VRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDP-EAGELD 80 (235)
T ss_pred ceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcC-CCCEEE
Confidence 45667789999999987654 67899999999997642 46789999999875 567899
Q ss_pred EEEEeC---CchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhcc
Q 005126 373 LIVKCD---GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSN 449 (713)
Q Consensus 373 ~~Ik~~---G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~ 449 (713)
|.|+.. |..|+.+.+ ++ +|+.+.+.||+|.+..+ ...+++||||||+||||++++++++...
T Consensus 81 ~~v~~~~~~G~~s~~l~~-l~----------~Gd~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~~il~~~~~~--- 145 (235)
T cd06193 81 IDFVLHGDEGPASRWAAS-AQ----------PGDTLGIAGPGGSFLPP-PDADWYLLAGDETALPAIAAILEELPAD--- 145 (235)
T ss_pred EEEEeCCCCCchHHHHhh-CC----------CCCEEEEECCCCCCCCC-CCcceEEEEeccchHHHHHHHHHhCCCC---
Confidence 999774 667888753 22 58899999999998643 3467899999999999999999977431
Q ss_pred CCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHh-ccCCCCeeE
Q 005126 450 RKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAV-RFGTQSNYA 528 (713)
Q Consensus 450 ~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~ 528 (713)
.++++++++|+.+|+..+++ ..+++++..++++++.. ..+.. ..... ...+...+|
T Consensus 146 ------~~~~~~~~~~~~~d~~~l~~-----------~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~vy 202 (235)
T cd06193 146 ------ARGTALIEVPDAADEQPLPA-----------PAGVEVTWLHRGGAEAG--ELALL----AVRALAPPAGDGYVW 202 (235)
T ss_pred ------CeEEEEEEECCHHHccccCC-----------CCCcEEEEEeCCCCCcc--hhHHH----HHhcccCCCCCeEEE
Confidence 57999999999976533221 12556665555433211 11110 11111 122346899
Q ss_pred EcCcchHHHHHHHH
Q 005126 529 VNGLESLIWMAALV 542 (713)
Q Consensus 529 vcGp~~~~~~a~~~ 542 (713)
+|||++|++.+.-.
T Consensus 203 icGp~~mv~~v~~~ 216 (235)
T cd06193 203 IAGEAGAVRALRRH 216 (235)
T ss_pred EEccHHHHHHHHHH
Confidence 99999999987553
No 67
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.79 E-value=4.7e-21 Score=172.36 Aligned_cols=98 Identities=37% Similarity=0.759 Sum_probs=7.1
Q ss_pred eeEEEEEEecCCeEEEEEecCCC-CccCCCeEEEEeCCCCC--CcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHH
Q 005126 312 TCILSARVFPSKAIELILPKHAG-LKFTPTSVIFMKIPSIS--KFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQM 388 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~-~~~~pGQ~v~L~~P~~s--~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~ 388 (713)
+.+++++.+++|+++++++++.. ++|+||||+||++|.++ .+|||||||+|+|. ++.++++||..||||++|++.
T Consensus 4 ~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~~g~~T~~L~~~ 81 (105)
T PF08022_consen 4 VRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKARGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEeCCCchHHHHHH
Confidence 34567888999999999999876 99999999999999999 56999999999984 779999999999999999998
Q ss_pred HHhcccCCCCCCcceeEEEECCCCCC
Q 005126 389 IHAELDSDADQMRCIPVAIEGPYGPA 414 (713)
Q Consensus 389 ~~~~~~~~~~~~~~~~v~VeGPYG~~ 414 (713)
+.+.. .+.....++.||||||.+
T Consensus 82 ~~~~~---~~~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 82 LSESP---SKQGNRLRVFIDGPYGAP 104 (105)
T ss_dssp ------------------TTSTTSHH
T ss_pred Hhhhc---ccCCCceEEEEECCCCCC
Confidence 76321 122346789999999964
No 68
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.79 E-value=4e-18 Score=211.09 Aligned_cols=204 Identities=13% Similarity=0.116 Sum_probs=149.3
Q ss_pred ecCCeEEEEEecCCC---CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEe-CCchhHHHHHHHHhcccC
Q 005126 320 FPSKAIELILPKHAG---LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC-DGEWTSSLYQMIHAELDS 395 (713)
Q Consensus 320 l~~~~v~l~l~~~~~---~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~-~G~~T~~L~~~~~~~~~~ 395 (713)
.+.++..++|..+.. +.+.||||+.|++|..+.-..++||++|.|+ +++.++|.||. .|..|+.|.+ ++
T Consensus 928 ~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr~~~G~~S~~L~~-l~----- 1000 (1167)
T PTZ00306 928 FGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILARGDKGTLKEWISA-LR----- 1000 (1167)
T ss_pred ccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEEcCCChhHHHHhh-CC-----
Confidence 356766666655432 5799999999998643333579999999986 56789999998 6889998853 22
Q ss_pred CCCCCcceeEEEECCCCCC----------CCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeC
Q 005126 396 DADQMRCIPVAIEGPYGPA----------TMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 465 (713)
Q Consensus 396 ~~~~~~~~~v~VeGPYG~~----------~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r 465 (713)
+|+.+.|.||+|.. ..+-...++++|||||+||||++|++++++.+.. ....++++|+|++|
T Consensus 1001 -----~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~---~~~~~~i~Llyg~r 1072 (1167)
T PTZ00306 1001 -----PGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY---VDSIESIRLIYAAE 1072 (1167)
T ss_pred -----CCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc---cCCCceEEEEEEeC
Confidence 58899999998831 1122345789999999999999999999886420 01236899999999
Q ss_pred CcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccC-CCCeeEEcCcchHHHHHHH
Q 005126 466 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFG-TQSNYAVNGLESLIWMAAL 541 (713)
Q Consensus 466 ~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~vcGp~~~~~~a~~ 541 (713)
+.+|+.+.+++.+ +.+. ...++++++.++++++.+.+..|++++..+.+.+... ++..+|+|||++|+....-
T Consensus 1073 ~~~dl~~~~eL~~-l~~~--~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCGP~~mv~~v~~ 1146 (1167)
T PTZ00306 1073 DVSELTYRELLES-YRKE--NPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICGPPVMQRAVKA 1146 (1167)
T ss_pred CHHHhhHHHHHHH-HHHH--CCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeCCHHHHHHHHH
Confidence 9999988888754 3322 1236888888887665555567888766555554333 3467999999999987654
No 69
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.77 E-value=1.2e-17 Score=201.60 Aligned_cols=204 Identities=14% Similarity=0.141 Sum_probs=143.1
Q ss_pred eeEEEEEEecCCeEEEEEecCCC-CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHH
Q 005126 312 TCILSARVFPSKAIELILPKHAG-LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 390 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~~-~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~ 390 (713)
..+++.+.+++++..+++..+.. ..++||||+.|.++..+ +.|||||++.|. +++.++++||..|..|+.|.++ +
T Consensus 651 ~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~-~~g~i~l~Vk~vG~~T~~L~~l-k 726 (944)
T PRK12779 651 QTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDA-EKGTIDLVVQGMGTSSLEINRM-A 726 (944)
T ss_pred EEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCC-CCCEEEEEEEeeccHHHHHhcC-C
Confidence 56777778899999999976543 47999999999986433 569999998865 5678999999999888766432 2
Q ss_pred hcccCCCCCCcceeEE-EECCCCCCCC-Cc-CCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc
Q 005126 391 AELDSDADQMRCIPVA-IEGPYGPATM-DF-LRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS 467 (713)
Q Consensus 391 ~~~~~~~~~~~~~~v~-VeGPYG~~~~-~~-~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~ 467 (713)
+|+.+. |.||+|.+.. +. ...+++||||||+||||++++++++..++ .+++++|++|+.
T Consensus 727 ----------~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g--------~~V~li~G~Rs~ 788 (944)
T PRK12779 727 ----------IGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG--------NHVTLISGFRAK 788 (944)
T ss_pred ----------CcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC--------CCEEEEEEeCCH
Confidence 578885 9999998742 11 12368999999999999999999987642 579999999999
Q ss_pred chhhhHHhHh--HHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccC-----CCCeeEEcCcchHHHHHH
Q 005126 468 QEICLLNSIS--PLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFG-----TQSNYAVNGLESLIWMAA 540 (713)
Q Consensus 468 ~~l~~~~~l~--~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~vcGp~~~~~~a~ 540 (713)
+++.+.+++. +.+.+.. ...++ ++++.+++ +.+.+|++++.......... +...+|+|||++||....
T Consensus 789 edl~~~del~~L~~la~~~--~~~~~--v~~ttddg-s~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~ 863 (944)
T PRK12779 789 EFLFWTGDDERVGKLKAEF--GDQLD--VIYTTNDG-SFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVS 863 (944)
T ss_pred HHhhhHHHHHHHHHHHHHc--CCCeE--EEEEecCC-CCCCccccChHHHHHHHhcccccccCCcEEEEECCHHHHHHHH
Confidence 9887766542 2232221 11233 33444433 34456777654221111111 135699999999998775
Q ss_pred HH
Q 005126 541 LV 542 (713)
Q Consensus 541 ~~ 542 (713)
-.
T Consensus 864 ~~ 865 (944)
T PRK12779 864 DL 865 (944)
T ss_pred HH
Confidence 53
No 70
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.77 E-value=7.7e-18 Score=204.92 Aligned_cols=195 Identities=11% Similarity=0.183 Sum_probs=144.9
Q ss_pred eEEEEEEecCCeEEEEEecCC-CCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHHHHHHh
Q 005126 313 CILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 391 (713)
Q Consensus 313 ~ivs~~~l~~~~v~l~l~~~~-~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~~~~~~ 391 (713)
.+++.+.+.+++..+++..|. ...++||||+.|+++..+ +.+||||++.+. +++.+++.+|..|..|++|++.++
T Consensus 3 ~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~--errplSIa~~~~-~~g~i~l~vk~vG~~T~~L~~~lk- 78 (1006)
T PRK12775 3 SIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGA--ERIPLTVADFDR-KKGTITMVVQALGKTTREMMTKFK- 78 (1006)
T ss_pred EEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCC--eeEEEEecCcCC-CCCEEEEEEEecCcHHHHHHhcCC-
Confidence 467777888999999997764 467999999999987533 579999998764 567899999999999999976543
Q ss_pred cccCCCCCCcceeE-EEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 005126 392 ELDSDADQMRCIPV-AIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 470 (713)
Q Consensus 392 ~~~~~~~~~~~~~v-~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l 470 (713)
.|+.+ .+.||+|.+.. ...+++++|||||+||||++|+++++...+ .+++++|+.|+.+++
T Consensus 79 ---------~Gd~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~g--------~~v~li~g~R~~~~l 140 (1006)
T PRK12775 79 ---------AGDTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEAG--------ARTTGIIGFRNKDLV 140 (1006)
T ss_pred ---------CCCEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhCC--------CcEEEEEeCCChHHc
Confidence 57787 79999998643 345679999999999999999999987642 569999999999988
Q ss_pred hhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 471 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 471 ~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+.+++.. +. + + ++++.+++ +.+.+|++++.. .+.....+...+|+|||++||....-+
T Consensus 141 ~~~del~~-~~----~--~----~~v~tddg-s~G~~G~vt~~l-~~~l~~~~~d~vy~CGP~~Mm~av~~~ 199 (1006)
T PRK12775 141 FWEDKFGK-YC----D--D----LIVCTDDG-SYGKPGFVTAAL-KEVCEKDKPDLVVAIGPLPMMNACVET 199 (1006)
T ss_pred ccHHHHHh-hc----C--c----EEEEECCC-CCCCCCChHHHH-HHHhccCCCCEEEEECCHHHHHHHHHH
Confidence 88777643 11 1 1 24443433 334556665432 222222223479999999999887654
No 71
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.70 E-value=6.5e-17 Score=149.62 Aligned_cols=121 Identities=40% Similarity=0.622 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhCCCchhhHHHHHHHHHHHHHHHHHhhccceeecccccch-hhHHHHHhhcccch
Q 005126 157 FGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHI-QDEMWRWQKTGRIY 235 (713)
Q Consensus 157 ~G~la~~~l~ll~l~~~Rn~~l~~l~g~~~~~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ 235 (713)
+|.+|.+++++++++++||+++...+|+++|+.+.+|||+|+++++++++|++.+...+...+.. ..+.......+..+
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYN 80 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHH
Confidence 58999999999999999999999999999999999999999999999999999987654432110 01111122244567
Q ss_pred hhHHHHHHHHHHHHHhcchHHH-hhhhHHhHHHHHHHHHHHHH
Q 005126 236 LAGEIALVTGLVMWITSLPQIR-RKKFEFFYYTHHLYIIFLIF 277 (713)
Q Consensus 236 ~~G~ial~~~~~m~v~S~~~iR-r~~YE~F~~~H~l~~v~~v~ 277 (713)
.+|.++++++++|+++|.+++| |+.||.|+++|+++++++++
T Consensus 81 ~~G~~a~~~l~~l~~tS~~~~R~r~~ye~f~~~H~~~~~~~~l 123 (125)
T PF01794_consen 81 LTGIIALLLLLILAVTSFPWIRRRRNYEIFYYLHILFYIAFLL 123 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999 89999999999997765443
No 72
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.70 E-value=1.4e-16 Score=174.36 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=130.6
Q ss_pred CCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEe----------CCchhHHHHHHHHhcccCCCCCCcce
Q 005126 334 GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCI 403 (713)
Q Consensus 334 ~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~~~ 403 (713)
..++.|||++.+..| . +.|+|||+|+|...++.++++|+. .|..|+.|.+..+ +|.
T Consensus 129 ~~~~~~gq~l~l~~~-~---~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~----------~Gd 194 (360)
T cd06199 129 PARLTAEELLDLLRP-L---QPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLK----------EGD 194 (360)
T ss_pred CCCCCHHHHHHhCcC-C---CCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCC----------CCC
Confidence 467889999998744 2 679999999997556789998874 4888888877543 477
Q ss_pred eEEEECCC-CCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc-chhhhHHhHhHHhh
Q 005126 404 PVAIEGPY-GPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLS 481 (713)
Q Consensus 404 ~v~VeGPY-G~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~-~~l~~~~~l~~~l~ 481 (713)
.+.+.+|. |.+..+-....++||||||+||||++|++++..... ...++.|+|++|+. +|+.+.+++.+..
T Consensus 195 ~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~------~~~~~~L~~G~R~~~~D~~y~~el~~~~- 267 (360)
T cd06199 195 TVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG------AKGKNWLFFGERHFATDFLYQDELQQWL- 267 (360)
T ss_pred EEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc------CCCcEEEEEcCCCCccchhHHHHHHHHH-
Confidence 89998755 466554444679999999999999999999876542 23678999999997 6887877775432
Q ss_pred hccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcc-hHHHHHHHH
Q 005126 482 NQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLE-SLIWMAALV 542 (713)
Q Consensus 482 ~~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~-~~~~~a~~~ 542 (713)
+ +..+++++...+|+++....+++.+.+....-......+..+|+|||+ .|.....-+
T Consensus 268 ~---~~~~~~~~~a~Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~ 326 (360)
T cd06199 268 K---DGVLTRLDTAFSRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAA 326 (360)
T ss_pred H---cCCCeEEEEEEccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHH
Confidence 2 234677888889876544444444433211110012235789999999 776655443
No 73
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.67 E-value=3.4e-16 Score=181.32 Aligned_cols=184 Identities=14% Similarity=0.119 Sum_probs=131.0
Q ss_pred CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEe----------CCchhHHHHHHHHhcccCCCCCCccee
Q 005126 335 LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCIP 404 (713)
Q Consensus 335 ~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~~~~ 404 (713)
.++.||||+.+..| .+.|||||+|+|..+++.++++|+. .|..|..|.+.++ +|.+
T Consensus 367 ~~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~----------~Gd~ 432 (597)
T TIGR01931 367 ADLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLK----------EGDT 432 (597)
T ss_pred CCCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCC----------CCCE
Confidence 67899999998865 3789999999987567789999885 4899999987544 4678
Q ss_pred EEEECCC-CCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC-cchhhhHHhHhHHhhh
Q 005126 405 VAIEGPY-GPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPLLSN 482 (713)
Q Consensus 405 v~VeGPY-G~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~-~~~l~~~~~l~~~l~~ 482 (713)
+.|.||. |.+..+-....++||||||+||||+++++++...++ ...++.|+|++|+ .+|+.+.+|+.....
T Consensus 433 v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~------~~g~~~LffG~R~~~~D~ly~~El~~~~~- 505 (597)
T TIGR01931 433 VPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG------AKGKNWLFFGNPHFTTDFLYQVEWQNYLK- 505 (597)
T ss_pred EEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc------CCCCEEEEECCCCCCcchhHHHHHHHHHH-
Confidence 8898865 456554445578999999999999999999887642 2367999999999 678888777755332
Q ss_pred ccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcC-cchHHHHHHHH
Q 005126 483 QQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNG-LESLIWMAALV 542 (713)
Q Consensus 483 ~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcG-p~~~~~~a~~~ 542 (713)
+....+++...+|+++....+++.+.+....-......+..+|+|| |+.|+....-.
T Consensus 506 ---~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~ 563 (597)
T TIGR01931 506 ---KGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQA 563 (597)
T ss_pred ---cCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHH
Confidence 2234456777788654444445544432211111122457899999 77887665543
No 74
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.66 E-value=8.3e-16 Score=169.76 Aligned_cols=185 Identities=16% Similarity=0.127 Sum_probs=124.3
Q ss_pred ccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEe------------CCchhHHHHHHHHhcccCCCCCCcce
Q 005126 336 KFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC------------DGEWTSSLYQMIHAELDSDADQMRCI 403 (713)
Q Consensus 336 ~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~------------~G~~T~~L~~~~~~~~~~~~~~~~~~ 403 (713)
+...||++.+. |.+ +.|||||+|+|..+++.+++.|+. .|..|+.|.+ +. .|.
T Consensus 146 ~~~~~~~l~~~-p~l---~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd 210 (384)
T cd06206 146 ALPLATFLAML-PPM---RPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSS-LR----------PGD 210 (384)
T ss_pred CCCHHHHHHhC-ccc---CCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhh-CC----------CCC
Confidence 34568888876 543 789999999986445656666654 5778888854 22 344
Q ss_pred eEE--EECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc-chhhhHHhHhHHh
Q 005126 404 PVA--IEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLL 480 (713)
Q Consensus 404 ~v~--VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~-~~l~~~~~l~~~l 480 (713)
.+. +.||+|.+..+....+++||||||+||||++|++++....... .....++.|+|++|+. +|+.+.+++.+.
T Consensus 211 ~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~--~~~~~~v~L~~G~R~~~~d~ly~~el~~~- 287 (384)
T cd06206 211 SIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQ--GRKLAPALLFFGCRHPDHDDLYRDELEEW- 287 (384)
T ss_pred eEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhc--CCCcCCEEEEEeCCCCCcccchHHHHHHH-
Confidence 544 6799998866545568999999999999999999987653211 1123579999999999 788887777543
Q ss_pred hhccCCCccEEEEEEEeCCCCC-ccchhhhccchhHHHHhccCCCCeeEEcCcchHHHHHHHH
Q 005126 481 SNQQSKKWHLTLKVFVTQEEQS-SVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 481 ~~~~~~~~~l~i~iyvTr~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
.+ ..++++...++|+++. ....++.+.+....-.....++..+|+|||++|+....-.
T Consensus 288 ~~----~~~~~l~~a~Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~M~~~v~~~ 346 (384)
T cd06206 288 EA----AGVVSVRRAYSRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGDGRMAPGVREV 346 (384)
T ss_pred HH----CCCeEEEEEecccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECCCchHHHHHHH
Confidence 22 2467888888887543 2233333322211100112345789999999988766543
No 75
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.66 E-value=1.5e-15 Score=167.69 Aligned_cols=174 Identities=16% Similarity=0.104 Sum_probs=122.7
Q ss_pred CcceeeeeeeeCCCCCCCcEEEEEEeC-----------CchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCC
Q 005126 352 KFQWHSFSITSSSSVDDQTMSLIVKCD-----------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLR 420 (713)
Q Consensus 352 ~~q~HPFTIaS~p~~~~~~l~~~Ik~~-----------G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~ 420 (713)
..+.+||||+|+|..+++.++++||.. |-.|+.|.+ ++ .|.++.+.||+|.+..+-..
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~~p~g~F~lp~~~ 229 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAG-LK----------VGQRVTVFIKKSSFKLPKDP 229 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhh-cC----------CCCEEEEEEECCcccCCCCC
Confidence 458899999999975568899999853 777888864 22 47789999999987655444
Q ss_pred CCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc-chhhhHHhHhHHhhhccCCCccEEEEEEEeCC
Q 005126 421 YDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWHLTLKVFVTQE 499 (713)
Q Consensus 421 ~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~-~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~ 499 (713)
..++||||||+||||++|++++......+ .....++.|+|++|+. +|+.+.+++.+... +..++++++..+|+
T Consensus 230 ~~plImIa~GtGIAP~rs~l~~~~~~~~~--~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~----~~~~~~~~~a~Srd 303 (382)
T cd06207 230 KKPIIMVGPGTGLAPFRAFLQERAALLAQ--GPEIGPVLLYFGCRHEDKDYLYKEELEEYEK----SGVLTTLGTAFSRD 303 (382)
T ss_pred CCCEEEEcCCccHHHHHHHHHHHHHHhhc--CccCCCEEEEECCCCCCccccHHHHHHHHHh----CCCCceEEEEecCC
Confidence 57899999999999999999987653211 1134789999999998 88878777755332 23467888888887
Q ss_pred CCCccchhhhccchhHHHHhccCCC-CeeEEcCcch-HHHHHHHH
Q 005126 500 EQSSVTVREVLNDLSLVRAVRFGTQ-SNYAVNGLES-LIWMAALV 542 (713)
Q Consensus 500 ~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~vcGp~~-~~~~a~~~ 542 (713)
++.....++.+.+....-.....+. ..+|+|||++ |+....-.
T Consensus 304 ~~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~ 348 (382)
T cd06207 304 QPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEA 348 (382)
T ss_pred CCCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHH
Confidence 6544444444433211100011222 4799999998 88876544
No 76
>PRK06214 sulfite reductase; Provisional
Probab=99.59 E-value=2.8e-14 Score=161.56 Aligned_cols=165 Identities=17% Similarity=0.203 Sum_probs=113.0
Q ss_pred CCcceeeeeeeeCCCCCCCcEEEEEEe----------CCchhHHHHHHHHhcccCCCCCCcce--eEEEECCCCCCCCCc
Q 005126 351 SKFQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCI--PVAIEGPYGPATMDF 418 (713)
Q Consensus 351 s~~q~HPFTIaS~p~~~~~~l~~~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~~~--~v~VeGPYG~~~~~~ 418 (713)
...+.|||||+|+|..+++.++++||. .|..|+.|.+.++ .|. .+.+.+|+| +..+.
T Consensus 312 p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~----------~Gd~V~v~i~~~~g-F~lp~ 380 (530)
T PRK06214 312 DPLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLA----------PGTRVRVYVQKAHG-FALPA 380 (530)
T ss_pred CCCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCC----------CCCEEEEEecCCCC-CccCC
Confidence 345889999999997557889999975 3777888876543 244 455567777 65554
Q ss_pred CCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC-cchhhhHHhHhHHhhhccCCCccEEEEEEEe
Q 005126 419 LRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPLLSNQQSKKWHLTLKVFVT 497 (713)
Q Consensus 419 ~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~-~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvT 497 (713)
....++||||+|+||||++|++++..... ...++.|+|++|+ .+|+.+.+++.+... +....++++..+
T Consensus 381 ~~~~PiImIg~GTGIAPfrsfLq~r~~~~------~~g~~~LffG~R~~~~D~ly~dEL~~l~~----~g~l~~l~~afS 450 (530)
T PRK06214 381 DPNTPIIMVGPGTGIAPFRAFLHERAATK------APGRNWLFFGHQRSATDFFYEDELNGLKA----AGVLTRLSLAWS 450 (530)
T ss_pred CCCCCEEEEcCCeeHHHHHHHHHHHHHhc------CCCCeEEEEEecCChhhhHHHHHHHHHHH----hCCceEEEEEEe
Confidence 44578999999999999999999876532 2367899999965 567777777654332 233456777888
Q ss_pred CCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHH
Q 005126 498 QEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLI 536 (713)
Q Consensus 498 r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~ 536 (713)
|+++.....++.+.+....-.....++..+|+|||..+|
T Consensus 451 Rd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M 489 (530)
T PRK06214 451 RDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRM 489 (530)
T ss_pred cCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHH
Confidence 876544455555543221111122345789999998766
No 77
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.58 E-value=5e-14 Score=156.19 Aligned_cols=178 Identities=16% Similarity=0.184 Sum_probs=119.6
Q ss_pred CcceeeeeeeeCCCCCCCcEEEEEEe-----CCchhHHHHHHHHhcccCCCCCCcceeEEEEC-CCCCCCCCcC-CCCeE
Q 005126 352 KFQWHSFSITSSSSVDDQTMSLIVKC-----DGEWTSSLYQMIHAELDSDADQMRCIPVAIEG-PYGPATMDFL-RYDSL 424 (713)
Q Consensus 352 ~~q~HPFTIaS~p~~~~~~l~~~Ik~-----~G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeG-PYG~~~~~~~-~~~~v 424 (713)
..+.|+|||+|+|..+++.+++.|+. .|-.|+.|.+..+.. ...|..+.+.| |.|.+..+.. ...++
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~------~~~G~~v~i~~~~~g~F~lp~~~~~~pi 244 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSA------SSHGVKVPFYLRSSSRFRLPPDDLRRPI 244 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhh------cCCCCEEEEEEecCCCcCCCCcCCCCCE
Confidence 44789999999997446789998877 277899998865310 11467788988 6777765544 45789
Q ss_pred EEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc-chhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCc
Q 005126 425 LLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS 503 (713)
Q Consensus 425 vlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~-~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~ 503 (713)
||||||+||||+++++++..............++.|+|++|+. +|+.+.+|+.+... +....++.+..+|+++.+
T Consensus 245 ImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~----~~~~~~~~~a~SRd~~~~ 320 (398)
T cd06203 245 IMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLE----EGILTRLIVAFSRDENDG 320 (398)
T ss_pred EEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHH----cCCCceEEEEECCCCCCC
Confidence 9999999999999999987653111111234679999999999 68888887755332 234556888889876532
Q ss_pred cchhhhccchhHHHH--h---ccCCCCeeEEcCcc-hHHHHHH
Q 005126 504 VTVREVLNDLSLVRA--V---RFGTQSNYAVNGLE-SLIWMAA 540 (713)
Q Consensus 504 ~~~~g~~~~~~~~~~--~---~~~~~~~~~vcGp~-~~~~~a~ 540 (713)
+.++++.+...... + ...++..+|+|||+ .|.....
T Consensus 321 -g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~ 362 (398)
T cd06203 321 -STPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVR 362 (398)
T ss_pred -CCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHH
Confidence 22344443322211 1 11245789999996 5655443
No 78
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.57 E-value=4.4e-14 Score=157.39 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=124.3
Q ss_pred CcceeeeeeeeCCCCCCCcEEEEEEeC-----------CchhHHHHHHHHhcc----------cCCCCCCcceeEEEECC
Q 005126 352 KFQWHSFSITSSSSVDDQTMSLIVKCD-----------GEWTSSLYQMIHAEL----------DSDADQMRCIPVAIEGP 410 (713)
Q Consensus 352 ~~q~HPFTIaS~p~~~~~~l~~~Ik~~-----------G~~T~~L~~~~~~~~----------~~~~~~~~~~~v~VeGP 410 (713)
..+.|+|||+|+|..+++.+++.|+.. |-.|+.|.+...... ....+...|+.+.+.+|
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~ 254 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVR 254 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEe
Confidence 458899999999976677888888742 778888888653110 00001124677888889
Q ss_pred CCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc-chhhhHHhHhHHhhhccCCCcc
Q 005126 411 YGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWH 489 (713)
Q Consensus 411 YG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~-~~l~~~~~l~~~l~~~~~~~~~ 489 (713)
.|.+..+.....++||||||+||||++|++++......++ ....++.|+|++|+. +|+.+.+++.+... ...+
T Consensus 255 ~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~--~~~~~v~L~~G~R~~~~d~ly~~el~~~~~----~~~~ 328 (416)
T cd06204 255 RSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESG--KKVGPTLLFFGCRHPDEDFIYKDELEEYAK----LGGL 328 (416)
T ss_pred cCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhcc--CccCCEEEEEcCCCCCcccchHHHHHHHHH----cCCc
Confidence 9987655444579999999999999999999865432111 123679999999998 68877777655332 2346
Q ss_pred EEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcch-HHHHHHHH
Q 005126 490 LTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLES-LIWMAALV 542 (713)
Q Consensus 490 l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~-~~~~a~~~ 542 (713)
+++....+|+++....+++++.+....-.....+...+|+|||++ |+....-.
T Consensus 329 ~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~ 382 (416)
T cd06204 329 LELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKT 382 (416)
T ss_pred eEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHH
Confidence 788888888765444455555432111000122347799999998 87766544
No 79
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.54 E-value=2.8e-14 Score=164.82 Aligned_cols=178 Identities=14% Similarity=0.149 Sum_probs=126.5
Q ss_pred CccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEe----------CCchhHHHHHHHHhcccCCCCCCccee
Q 005126 335 LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCIP 404 (713)
Q Consensus 335 ~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~~~~ 404 (713)
.++.||||+.+..| .+.|+|||+|+|..+++.+.+.|+. .|..|..|.+.++ .|.+
T Consensus 370 ~~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~----------~Gd~ 435 (600)
T PRK10953 370 AQLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLE----------EEGE 435 (600)
T ss_pred CCCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCC----------CCCE
Confidence 46899999988765 3679999999986556677777533 4666777765443 4778
Q ss_pred EEEECCCC-CCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC-cchhhhHHhHhHHhhh
Q 005126 405 VAIEGPYG-PATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPLLSN 482 (713)
Q Consensus 405 v~VeGPYG-~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~-~~~l~~~~~l~~~l~~ 482 (713)
+.|.||.| .+..+.....++||||+|+||||+.+++++....+ ...++.|+|++|+ ..|..+.+|+.....+
T Consensus 436 v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~------~~~~~~LffG~R~~~~D~lY~~El~~~~~~ 509 (600)
T PRK10953 436 VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG------APGKNWLFFGNPHFTEDFLYQVEWQRYVKE 509 (600)
T ss_pred EEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC------CCCCeEEEeeccCCccchhHHHHHHHHHHc
Confidence 99999886 56555445679999999999999999999876542 2367999999998 6688777777654322
Q ss_pred ccCCCccEEEEEEEeCCCCCccchhhhccchhHHHHhccCCCCeeEEcCcchHH
Q 005126 483 QQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLI 536 (713)
Q Consensus 483 ~~~~~~~l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~ 536 (713)
....+++...+|+++....+++++.+....-..+..++..+|+||+...|
T Consensus 510 ----g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M 559 (600)
T PRK10953 510 ----GLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRM 559 (600)
T ss_pred ----CCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccc
Confidence 22335778888887655566666654332221223446789999998533
No 80
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.50 E-value=3.3e-13 Score=149.97 Aligned_cols=175 Identities=15% Similarity=0.088 Sum_probs=112.5
Q ss_pred cceeeeeeeeCCCCCCCcEEEEEEe-------------CCchhHHHHHHHHhcccCCCCCCcceeEEEECCCC-CCCCCc
Q 005126 353 FQWHSFSITSSSSVDDQTMSLIVKC-------------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYG-PATMDF 418 (713)
Q Consensus 353 ~q~HPFTIaS~p~~~~~~l~~~Ik~-------------~G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG-~~~~~~ 418 (713)
.+.|+|||+|+|..+++.+++.|+. .|-.|+.|.+. + +|+.+.+.+|.| .+..+-
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l-~----------~Gd~v~v~~~~~~~F~lp~ 243 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGL-T----------PGDTVPCFVRSAPSFHLPE 243 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhC-C----------CCCEEEEEEeeCCccCCCC
Confidence 4789999999986556666666654 37778888542 2 366777766543 454443
Q ss_pred CCCCeEEEEEecCChhhHHHHHHHHHHhhc--cCCCCCCceEEEEEEeCCc-chhhhHHhHhHHhhhccCCCccEEEEEE
Q 005126 419 LRYDSLLLVAGGIGITPFLSILQEIASAQS--NRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWHLTLKVF 495 (713)
Q Consensus 419 ~~~~~vvlIAGGiGITP~lsil~~l~~~~~--~~~~~~~~~v~Lvw~~r~~-~~l~~~~~l~~~l~~~~~~~~~l~i~iy 495 (713)
....++||||||+||||++|++++...... ........++.|++++|+. +|..+.+|+.+.. + +....+++..
T Consensus 244 ~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~-~---~~~~~~~~~a 319 (406)
T cd06202 244 DPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAK-N---KGVLTEVYTA 319 (406)
T ss_pred CCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHH-H---cCCCceEEEE
Confidence 445789999999999999999998653210 0111234689999999999 7887777765432 2 2345678888
Q ss_pred EeCCCCC-ccchhhhccchhHHH-HhccCCCCeeEEcCcchHHHHHHHH
Q 005126 496 VTQEEQS-SVTVREVLNDLSLVR-AVRFGTQSNYAVNGLESLIWMAALV 542 (713)
Q Consensus 496 vTr~~~~-~~~~~g~~~~~~~~~-~~~~~~~~~~~vcGp~~~~~~a~~~ 542 (713)
++|+++. ...++..+.+....- ......+..+|+|||+.|+....-+
T Consensus 320 ~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~~~ 368 (406)
T cd06202 320 LSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDVTMAEDVSQT 368 (406)
T ss_pred EcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHHHH
Confidence 8987542 222333333221110 0111345789999999988765443
No 81
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.43 E-value=1.1e-12 Score=132.15 Aligned_cols=191 Identities=15% Similarity=0.252 Sum_probs=138.6
Q ss_pred EEEEEecCCCCccCCCeEEEEeCCCCC----C----------c---------------ceeeeeeeeCCCCCCCcEEEEE
Q 005126 325 IELILPKHAGLKFTPTSVIFMKIPSIS----K----------F---------------QWHSFSITSSSSVDDQTMSLIV 375 (713)
Q Consensus 325 v~l~l~~~~~~~~~pGQ~v~L~~P~~s----~----------~---------------q~HPFTIaS~p~~~~~~l~~~I 375 (713)
+.|.++..+...++||.|+.+.+|.-. . | ..+.||.+|.|+ +.+.+.+-|
T Consensus 152 L~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPe-E~giI~~Nv 230 (410)
T COG2871 152 LKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPE-EKGIIKLNV 230 (410)
T ss_pred heeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChh-hcCeEEEEE
Confidence 445556656789999999999998521 1 1 025788888886 667788888
Q ss_pred EeC-----------CchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHH
Q 005126 376 KCD-----------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIA 444 (713)
Q Consensus 376 k~~-----------G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~ 444 (713)
|.. |-.+..++.+ .+|++|.|.||||.+.. -+....+|+|+||.|.+|+.|.+-|.+
T Consensus 231 RIAtPPp~~~~~PpG~mSSyi~sL-----------KpGDKvtisGPfGEfFa-KdtdaemvFigGGAGmapmRSHIfDqL 298 (410)
T COG2871 231 RIATPPPRNPDAPPGQMSSYIWSL-----------KPGDKVTISGPFGEFFA-KDTDAEMVFIGGGAGMAPMRSHIFDQL 298 (410)
T ss_pred EeccCCCCCCCCCccceeeeEEee-----------cCCCeEEEeccchhhhh-ccCCCceEEEecCcCcCchHHHHHHHH
Confidence 852 3333333322 25889999999998743 234567999999999999999999988
Q ss_pred HhhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCC--CCccchhhhccchhHHHHhccC
Q 005126 445 SAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTVREVLNDLSLVRAVRFG 522 (713)
Q Consensus 445 ~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~--~~~~~~~g~~~~~~~~~~~~~~ 522 (713)
.+.. ..+++.+-|+.|+.++..+.+++.+ ++. +..|++.|+.++.+. +.|++.+|++.++..+..+...
T Consensus 299 ~rlh-----SkRkis~WYGARS~rE~fY~Ed~d~-L~a---e~pNF~wH~aLSdplpEDnW~g~TgFihnv~~en~Lk~h 369 (410)
T COG2871 299 KRLH-----SKRKISFWYGARSLREMFYQEDFDQ-LQA---ENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYENYLKDH 369 (410)
T ss_pred Hhhc-----ccceeeeeeccchHHHhHHHHHHHH-HHh---hCCCcEEEEEecCCCCcCCcccchhHHHHHHHhhhhhcC
Confidence 7642 3589999999999999988877754 332 557999999999875 4456667777666655544333
Q ss_pred ---CCCeeEEcCcchHHH
Q 005126 523 ---TQSNYAVNGLESLIW 537 (713)
Q Consensus 523 ---~~~~~~vcGp~~~~~ 537 (713)
++..+|+||||-|-.
T Consensus 370 ~aPEDceyYmCGPp~mNa 387 (410)
T COG2871 370 EAPEDCEYYMCGPPLMNA 387 (410)
T ss_pred CCchheeEEeeCcchhhH
Confidence 346899999986543
No 82
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.42 E-value=9.5e-13 Score=118.63 Aligned_cols=104 Identities=19% Similarity=0.307 Sum_probs=75.8
Q ss_pred EEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEEeCCCCCccc
Q 005126 426 LVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVT 505 (713)
Q Consensus 426 lIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~~~~~~ 505 (713)
|||||+||||++|+++++..++ ..++++|+|++|+.+|+.+.+++.+...+ . . .++++... .+++..+..
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~~l~~~~~~-~-~-~~~~~~~~-~~~~~~~~~ 70 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN------DNRKVTLFYGARTPEDLLFRDELEALAQE-Y-P-NRFHVVYV-SSPDDGWDG 70 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT------CTSEEEEEEEESSGGGSTTHHHHHHHHHH-S-T-TCEEEEEE-TTTTSSTTS
T ss_pred CeecceeHHHHHHHHHHHHHhC------CCCCEEEEEEEcccccccchhHHHHHHhh-c-c-cccccccc-cccccccCC
Confidence 7999999999999999999762 35899999999999999888887654332 2 1 13444333 334444556
Q ss_pred hhhhccchhHHHHhc---cCCCCeeEEcCcchHHHHH
Q 005126 506 VREVLNDLSLVRAVR---FGTQSNYAVNGLESLIWMA 539 (713)
Q Consensus 506 ~~g~~~~~~~~~~~~---~~~~~~~~vcGp~~~~~~a 539 (713)
.++++++....+... ..++..+|+|||++|+.++
T Consensus 71 ~~g~v~~~~~~~~~~~~~~~~~~~v~iCGp~~m~~~v 107 (109)
T PF00175_consen 71 FKGRVTDLLLEDLLPEKIDPDDTHVYICGPPPMMKAV 107 (109)
T ss_dssp EESSHHHHHHHHHHHHHHCTTTEEEEEEEEHHHHHHH
T ss_pred ceeehhHHHHHhhcccccCCCCCEEEEECCHHHHHHh
Confidence 677777766555444 3456789999999999875
No 83
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.12 E-value=1.6e-10 Score=102.58 Aligned_cols=91 Identities=21% Similarity=0.287 Sum_probs=73.5
Q ss_pred eeEEEEEEecCCeEEEEEecCC---CCccCCCeEEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEEeC--CchhHHHH
Q 005126 312 TCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLY 386 (713)
Q Consensus 312 ~~ivs~~~l~~~~v~l~l~~~~---~~~~~pGQ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~~--G~~T~~L~ 386 (713)
..+++.+.+++++..+++..+. ...+.||||+.|.++..+...+||||++|.|. +++.++++||.. |..|+.|.
T Consensus 2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEECTTSHHHHHHH
T ss_pred EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEeccCCHHHHHHH
Confidence 4577888899999888876653 36799999999999954556899999999986 677999999996 88999995
Q ss_pred HHHHhcccCCCCCCcceeEEEECCCCCC
Q 005126 387 QMIHAELDSDADQMRCIPVAIEGPYGPA 414 (713)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~v~VeGPYG~~ 414 (713)
+ ++ .|+.+.++||+|.+
T Consensus 81 ~-l~----------~Gd~v~i~gP~G~f 97 (99)
T PF00970_consen 81 Q-LK----------PGDEVEIRGPYGNF 97 (99)
T ss_dssp T-SC----------TTSEEEEEEEESSE
T ss_pred h-CC----------CCCEEEEEEccccc
Confidence 5 32 58899999999985
No 84
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.06 E-value=2.4e-09 Score=127.23 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=93.3
Q ss_pred ceeEEEEEEecCCeEEEEEecCC-CCccCCCeEEEEeCCCCC--Cc-ceeeeeeeeCCCCCCCcEEEEEEeCCchhHHHH
Q 005126 311 ETCILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSIS--KF-QWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLY 386 (713)
Q Consensus 311 ~~~ivs~~~l~~~~v~l~l~~~~-~~~~~pGQ~v~L~~P~~s--~~-q~HPFTIaS~p~~~~~~l~~~Ik~~G~~T~~L~ 386 (713)
..++++.+.+.+++.++++..|. .-.++||||+.|+.++.+ .+ +..||||++.+. +++.+++.++..|..|+.|.
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~-e~g~It~i~rvVGkgT~~Ls 870 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDV-EKGLISFIVFEVGKSTSLCK 870 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCC-CCCEEEEEEEEEChHHHHHh
Confidence 35678888889999999997764 236889999999986422 22 457999998864 56789999999999999997
Q ss_pred HHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHH
Q 005126 387 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIAS 445 (713)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~ 445 (713)
++ .+|..+.+.||+|.+. +..+++++++||||+|++| +.+.+.+
T Consensus 871 ~l-----------~~Gd~v~v~GPLG~pF-~i~~~k~vLLVgGGVGiAp---Lak~Lk~ 914 (1028)
T PRK06567 871 TL-----------SENEKVVLMGPTGSPL-EIPQNKKIVIVDFEVGNIG---LLKVLKE 914 (1028)
T ss_pred cC-----------CCCCEEEEEcccCCCC-CCCCCCeEEEEEccccHHH---HHHHHHH
Confidence 64 2477899999999864 3434689999999999997 4455543
No 85
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=98.99 E-value=1e-08 Score=117.41 Aligned_cols=167 Identities=15% Similarity=0.175 Sum_probs=118.9
Q ss_pred cceeeeeeeeCCCCCCCcEEEEEEe----------CCchhHHHHHHHHhcccCCCCCCcceeEEEECCCC-CCCCCcCCC
Q 005126 353 FQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYG-PATMDFLRY 421 (713)
Q Consensus 353 ~q~HPFTIaS~p~~~~~~l~~~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG-~~~~~~~~~ 421 (713)
+..|-|||+|+|..+++.+++.|.. .|.-|..|.++.. .+..+.|-..-+ .+..+-+..
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~----------~g~~i~v~v~~n~nf~lp~~~~ 440 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLE----------EGDTIPVFVQPNKNFRLPEDPE 440 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhc----------CCCeEEEEeccCCccccCCCCC
Confidence 3568899999998777777777654 4556667766643 234555555555 344444444
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC-cchhhhHHhHhHHhhhccCCCccEEEEEEEeCCC
Q 005126 422 DSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE 500 (713)
Q Consensus 422 ~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~-~~~l~~~~~l~~~l~~~~~~~~~l~i~iyvTr~~ 500 (713)
.+++|||-|+||+||.+++++-..++. ..+..|++++|+ ..|..+.+|+.+.. .+....++....+|++
T Consensus 441 ~PiIMIG~GTGIAPFRafvq~r~~~~~------~gk~wLfFG~R~~~~DfLY~~Ewe~~~----~~G~~~~l~~AfSRdq 510 (587)
T COG0369 441 TPIIMIGPGTGIAPFRAFVQERAANGA------EGKNWLFFGCRHFTEDFLYQEEWEEYL----KDGVLTRLDLAFSRDQ 510 (587)
T ss_pred CceEEEcCCCCchhHHHHHHHHHhccc------cCceEEEecCCCCccchhhHHHHHHHH----hcCCceeEEEEEeecC
Confidence 889999999999999999998877542 237999999999 56666666655422 2334788999999999
Q ss_pred CCccchhhhccchhHHHHhccCCCCeeEEcC-cchHHHHH
Q 005126 501 QSSVTVREVLNDLSLVRAVRFGTQSNYAVNG-LESLIWMA 539 (713)
Q Consensus 501 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcG-p~~~~~~a 539 (713)
+....++.++.+....-..+..+...+|+|| ...|..-.
T Consensus 511 ~~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV 550 (587)
T COG0369 511 EEKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDV 550 (587)
T ss_pred CCCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHH
Confidence 8888888888776554445555668999999 55555443
No 86
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.88 E-value=1.1e-08 Score=102.99 Aligned_cols=123 Identities=17% Similarity=0.190 Sum_probs=83.2
Q ss_pred EEEEEEecCCeEEEEEec-CCC---CccCCCeEEEEeCC--CCCCcceeeeeeeeCCCCCCCcEEEEEEe--CCchhHHH
Q 005126 314 ILSARVFPSKAIELILPK-HAG---LKFTPTSVIFMKIP--SISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSL 385 (713)
Q Consensus 314 ivs~~~l~~~~v~l~l~~-~~~---~~~~pGQ~v~L~~P--~~s~~q~HPFTIaS~p~~~~~~l~~~Ik~--~G~~T~~L 385 (713)
+......++|+.++.+.+ .+. ....|||||.++.. ..+.-.-+-++.+...+.-.+.+++.+|. .|-.++.+
T Consensus 154 vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~G~VS~~~ 233 (385)
T KOG3378|consen 154 VTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAGGVVSNFV 233 (385)
T ss_pred eeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehhchhhHHHh
Confidence 333334478888888743 222 45789999999863 33221112233333332246779999987 45566667
Q ss_pred HHHHHhcccCCCCCCcceeEEEECCCCCCCCC---cCCCCeEEEEEecCChhhHHHHHHHHHHh
Q 005126 386 YQMIHAELDSDADQMRCIPVAIEGPYGPATMD---FLRYDSLLLVAGGIGITPFLSILQEIASA 446 (713)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~---~~~~~~vvlIAGGiGITP~lsil~~l~~~ 446 (713)
++.++ .|+.+-+..|-|.+... .+...++++.|||+||||.++|++..+..
T Consensus 234 H~~~K----------VGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C 287 (385)
T KOG3378|consen 234 HDNLK----------VGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLC 287 (385)
T ss_pred hcccc----------ccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhc
Confidence 66544 68889999999988532 23447899999999999999999987764
No 87
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=98.85 E-value=2.9e-08 Score=113.78 Aligned_cols=176 Identities=19% Similarity=0.154 Sum_probs=110.2
Q ss_pred CCcceeeeeeeeCCCCCCCcEEEEEEe------C------CchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCC--C
Q 005126 351 SKFQWHSFSITSSSSVDDQTMSLIVKC------D------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPAT--M 416 (713)
Q Consensus 351 s~~q~HPFTIaS~p~~~~~~l~~~Ik~------~------G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~--~ 416 (713)
..++.|+|||+|+|....+.+.+.+-. . |--|+.|.++.. +.++-.-+|-+.+. +
T Consensus 418 p~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~-----------~~~~~~~~~~~~s~frl 486 (645)
T KOG1158|consen 418 PRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKP-----------GEKVPNPVPVGKSMFRL 486 (645)
T ss_pred ccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCC-----------ccccCcceeecccceec
Confidence 345899999999987666665554432 2 334556655321 11111122333332 3
Q ss_pred CcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCccEEEEEEE
Q 005126 417 DFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFV 496 (713)
Q Consensus 417 ~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~i~iyv 496 (713)
+.+...+++|||-|+||+||.+++++.......+...... +.|+++||+.++....++..+.. .......++..-.
T Consensus 487 p~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~---~~~~~l~~l~~A~ 562 (645)
T KOG1158|consen 487 PSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEY---KKAGILTRLDVAF 562 (645)
T ss_pred CCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHH---HhcCcchhheeee
Confidence 3345568999999999999999999988764333222334 89999999999875555543322 1234567788999
Q ss_pred eCCC-CCccchhhhccchhHHHHhcc-CCCCeeEEcCcch-HHHHHHH
Q 005126 497 TQEE-QSSVTVREVLNDLSLVRAVRF-GTQSNYAVNGLES-LIWMAAL 541 (713)
Q Consensus 497 Tr~~-~~~~~~~g~~~~~~~~~~~~~-~~~~~~~vcGp~~-~~~~a~~ 541 (713)
+|++ +.....+..+.+....--.-+ .++..+|+||... |+.-..-
T Consensus 563 SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~ 610 (645)
T KOG1158|consen 563 SREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQD 610 (645)
T ss_pred eccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHH
Confidence 9998 444555555554332221122 3468899999997 7765543
No 88
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=98.45 E-value=1.1e-05 Score=81.15 Aligned_cols=122 Identities=23% Similarity=0.135 Sum_probs=90.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHHHhhCCCchhhHHHHHHHHHHHHHHHHHhhccceeecccccchhhHHHHHhhc
Q 005126 152 RVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKT 231 (713)
Q Consensus 152 ~va~r~G~la~~~l~ll~l~~~Rn~~l~~l~g~~~~~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~~~~~~~~~~~ 231 (713)
.+..-+|..|...+.+.++. +++.+++|+ ++...+||++|..+++++++|.+.|.......+ . ++.+.-..+
T Consensus 42 ~~~~~tG~~Al~llll~l~l----~pL~~l~~~--~~l~~~RR~LGl~af~~a~lH~~~y~~~~~~~~-~-~~~~~~i~~ 113 (205)
T PRK05419 42 DIEHFTGLWALVFLLATLAV----TPLRRLTGQ--PLLIRTRRLLGLWAFFYATLHLLSYLLLDLGLD-W-SLLGKEIVK 113 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-H-HHHHHHHHh
Confidence 47889999999887766554 456677776 589999999999999999999987754221110 1 111111113
Q ss_pred ccchhhHHHHHHHHHHHHHhcchHHHhh-hhHHhHHHHHHHHHHHHHHhhhc
Q 005126 232 GRIYLAGEIALVTGLVMWITSLPQIRRK-KFEFFYYTHHLYIIFLIFFLFHA 282 (713)
Q Consensus 232 ~~~~~~G~ial~~~~~m~v~S~~~iRr~-~YE~F~~~H~l~~v~~v~~~~H~ 282 (713)
..+...|.++++.++.+.+||..+.||+ .| .|...|.+..+++++...|.
T Consensus 114 ~~~i~~G~ia~~lLl~LaiTS~~~~~rrLg~-~Wk~LH~l~Y~a~~L~~~H~ 164 (205)
T PRK05419 114 RPYITVGMAAFLILLPLALTSTRASQRRLGK-RWQKLHRLVYLIAILAPLHY 164 (205)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3445679999999999999999988775 56 89999998777777888893
No 89
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=98.00 E-value=2.1e-05 Score=85.82 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=100.5
Q ss_pred EEEEeCCCCCCcceeeeeeeeCCCCCCCcEEEEEE-----------eCCchhHHHHHHHHhcccCCCCCCcceeEEEECC
Q 005126 342 VIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVK-----------CDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGP 410 (713)
Q Consensus 342 ~v~L~~P~~s~~q~HPFTIaS~p~~~~~~l~~~Ik-----------~~G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGP 410 (713)
|++=.+|.+ ..+.|||+|.|. ..++++.|- ++|--|+.|.++.. + ..+++.|+
T Consensus 358 yl~d~~P~I---rPR~fSIas~~~--~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~-------g--~~i~~~v~-- 421 (574)
T KOG1159|consen 358 YLLDLLPVI---RPRAFSIASSPG--AHHLELLVAIVEYKTILKEPRRGLCSNWLASLKP-------G--DEIPIKVR-- 421 (574)
T ss_pred HHHHhcccc---ccceeeeccCCC--CCceeEEEEEEEEeeeccccccchhHHHHhhcCC-------C--CeEEEEEe--
Confidence 333345665 679999999985 334665443 25666777766521 1 23444444
Q ss_pred CCCCCCCcCCCCeEEEEEecCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcch-hhhHHhHhHHhhhccCCCcc
Q 005126 411 YGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE-ICLLNSISPLLSNQQSKKWH 489 (713)
Q Consensus 411 YG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~v~Lvw~~r~~~~-l~~~~~l~~~l~~~~~~~~~ 489 (713)
-|....+.....+++||+-|+||||+.+++++-..++ .....|+++||+.+. ..|-++..+ ...
T Consensus 422 ~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~-------~~~~~lFfGCR~K~~Df~y~~eW~~--------~~~ 486 (574)
T KOG1159|consen 422 PGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQG-------DKENVLFFGCRNKDKDFLYEDEWTE--------LNK 486 (574)
T ss_pred cCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhhc-------cCCceEEEecccCCccccccchhhh--------hhc
Confidence 2333333334569999999999999999999877542 233478889998763 434333221 112
Q ss_pred EEEEEEEeCCCCCccchhhhccchhHHHHhccC-CCCeeEEcCcchHHHH
Q 005126 490 LTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFG-TQSNYAVNGLESLIWM 538 (713)
Q Consensus 490 l~i~iyvTr~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~vcGp~~~~~~ 538 (713)
...+.-.+|+++....++..+.+......-... .+..+|+||..+.|-.
T Consensus 487 ~~~~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~ 536 (574)
T KOG1159|consen 487 RAFHTAFSRDQEQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPK 536 (574)
T ss_pred chhhhhcccccccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcH
Confidence 333446678777655566655554433332333 4578999999865543
No 90
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.66 E-value=0.0034 Score=62.59 Aligned_cols=119 Identities=17% Similarity=0.051 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccceeecccccchhhHHHHHhhcccchhhHHHHHHHHHHHHHhcchHHHhhhhHHhHH
Q 005126 187 EASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYY 266 (713)
Q Consensus 187 ~~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ial~~~~~m~v~S~~~iRr~~YE~F~~ 266 (713)
...+.+-|-+|..++++++.|...|+......+ . +..+.-.....+...|.++++.+..+.+||..+.||+.=..+..
T Consensus 71 ~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~-~-~~~~~d~~~rpyitiG~iaflll~pLalTS~k~~~rrlG~rW~~ 148 (209)
T COG2717 71 PKLIRIRRALGLWAFFYALLHFTAYLVLDLGLD-L-ALLGLDLLKRPYITIGMIAFLLLIPLALTSFKWVRRRLGKRWKK 148 (209)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 477889999999999999999998864321111 1 11111111334456899999999999999999999887799999
Q ss_pred HHHHHHHHHHHHhhhcCcc-----hhhHHHH-HHHHHHHHHHHHhhh
Q 005126 267 THHLYIIFLIFFLFHAGDR-----HFYMVFG-GIFLFGLDKLLRFIQ 307 (713)
Q Consensus 267 ~H~l~~v~~v~~~~H~~~~-----~~~~~~~-~i~l~~~dR~~R~~r 307 (713)
.|.+..+++++..+|.... ..++++. ..+.+.+.|+.+..+
T Consensus 149 LHrLvYl~~~L~~lH~~~s~K~~~~~~vlY~ii~~~lll~R~~k~~~ 195 (209)
T COG2717 149 LHRLVYLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRVTKTRS 195 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888889996321 1122222 224556777776653
No 91
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=94.62 E-value=0.6 Score=48.70 Aligned_cols=138 Identities=11% Similarity=0.135 Sum_probs=92.4
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCc----cCCCeEEEEeCCCCC-C-------------------cceeeeeeeeCCCC
Q 005126 311 ETCILSARVFPSKAIELILPKHAGLK----FTPTSVIFMKIPSIS-K-------------------FQWHSFSITSSSSV 366 (713)
Q Consensus 311 ~~~ivs~~~l~~~~v~l~l~~~~~~~----~~pGQ~v~L~~P~~s-~-------------------~q~HPFTIaS~p~~ 366 (713)
.+.++.++.++.+.+++++..+.... ...+||+.|.+|..+ . .-.++|||.+...
T Consensus 19 ~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~d~- 97 (265)
T COG2375 19 EATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAVDA- 97 (265)
T ss_pred EEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeeecc-
Confidence 35677788889999999998765333 334459999997532 1 1268999976532
Q ss_pred CCCc--EEEEEE-eCCchhHHHHHHHHhcccCCCCCCcceeEEEECCCCCCCCCcCCCCeEEEEEecCChhhHHHHHHHH
Q 005126 367 DDQT--MSLIVK-CDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEI 443 (713)
Q Consensus 367 ~~~~--l~~~Ik-~~G~~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l 443 (713)
+.++ +.|++- ..|..+..-. .+ ..|+++.+-||-|... +-..++..+|++-=+++..+..+|+++
T Consensus 98 ~~~e~~vDfVlH~~~gpas~WA~-~a----------~~GD~l~i~GP~g~~~-p~~~~~~~lLigDetAlPAIa~iLE~l 165 (265)
T COG2375 98 AAGELDVDFVLHGEGGPASRWAR-TA----------QPGDTLTIMGPRGSLV-PPEAADWYLLIGDETALPAIARILETL 165 (265)
T ss_pred cccEEEEEEEEcCCCCcchhhHh-hC----------CCCCEEEEeCCCCCCC-CCCCcceEEEeccccchHHHHHHHHhC
Confidence 3344 444444 2343333322 22 2689999999999853 456789999999999999999999987
Q ss_pred HHhhccCCCCCCceEEEEEEeCCcchh
Q 005126 444 ASAQSNRKYRFPSKVQLIYVIKSSQEI 470 (713)
Q Consensus 444 ~~~~~~~~~~~~~~v~Lvw~~r~~~~l 470 (713)
-.. .+.+.+-.+++.+|-
T Consensus 166 p~~---------~~~~a~lev~d~ad~ 183 (265)
T COG2375 166 PAD---------TPAEAFLEVDDAADR 183 (265)
T ss_pred CCC---------CceEEEEEeCChHHh
Confidence 543 233455556665543
No 92
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=94.01 E-value=0.039 Score=55.55 Aligned_cols=32 Identities=31% Similarity=0.644 Sum_probs=28.5
Q ss_pred EEEeCchhhHHHHHHHHhhhhhhhhccCCCCCCceeeeccCc
Q 005126 670 VLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 711 (713)
Q Consensus 670 V~vCGP~~l~~~va~~c~~~~~~~~~~~~~~~~~f~fhs~sF 711 (713)
|++|||++|.+++++.|++ +....++||+|+|
T Consensus 179 v~~CGp~~~~~~~~~~~~~----------~~~~~~~~~~e~f 210 (210)
T cd06186 179 VVVCGPPGLVDDVRNAVAK----------KGGTGVEFHEESF 210 (210)
T ss_pred EEEECchhhccHHHHHHhh----------cCCCceEEEeecC
Confidence 9999999999999999987 3357799999998
No 93
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=93.03 E-value=0.54 Score=43.06 Aligned_cols=89 Identities=11% Similarity=0.183 Sum_probs=50.8
Q ss_pred EEEEEEecCCeEEEEEecCC--CC-ccCCCeEEEEeCCCCCCc---------------------ceeeeeeeeCCCCCCC
Q 005126 314 ILSARVFPSKAIELILPKHA--GL-KFTPTSVIFMKIPSISKF---------------------QWHSFSITSSSSVDDQ 369 (713)
Q Consensus 314 ivs~~~l~~~~v~l~l~~~~--~~-~~~pGQ~v~L~~P~~s~~---------------------q~HPFTIaS~p~~~~~ 369 (713)
+++++.++.+.+++++..+. .+ ...||||+.|.+|....- ..+.||+-+... +.+
T Consensus 2 V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~-~~~ 80 (117)
T PF08021_consen 2 VVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDP-ETG 80 (117)
T ss_dssp EEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEET-T--
T ss_pred EEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcC-CCC
Confidence 56778888999999998754 22 246999999999854321 468899987743 556
Q ss_pred cEEEEEEeCCc---hhHHHHHHHHhcccCCCCCCcceeEEEECCCCCC
Q 005126 370 TMSLIVKCDGE---WTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPA 414 (713)
Q Consensus 370 ~l~~~Ik~~G~---~T~~L~~~~~~~~~~~~~~~~~~~v~VeGPYG~~ 414 (713)
++.|-+-..|+ -++... .++ +|+++.|-||-|++
T Consensus 81 ~l~iDfv~Hg~~Gpas~WA~-~A~----------pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDEGPASRWAR-SAR----------PGDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS--HHHHHHH-H------------TT-EEEEEEEE---
T ss_pred EEEEEEEECCCCCchHHHHh-hCC----------CCCEEEEeCCCCCC
Confidence 77776655443 444443 333 68999999998864
No 94
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=91.69 E-value=0.14 Score=52.17 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=24.7
Q ss_pred EEEEeCchhhHHHHHHHHhhhhhhhhccCCCCCCceeeeccCcc
Q 005126 669 GVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFT 712 (713)
Q Consensus 669 GV~vCGP~~l~~~va~~c~~~~~~~~~~~~~~~~~f~fhs~sF~ 712 (713)
-||+|||+.|.++|.+.+++ . .+|+|.|+
T Consensus 192 ~v~~CGP~~m~~~~~~~~~~------------~---~~~~e~f~ 220 (220)
T cd06197 192 EVYLCGPPALEKAVLEWLEG------------K---KVHRESFA 220 (220)
T ss_pred cEEEECcHHHHHHHHHHhhh------------c---eeEecccC
Confidence 48999999999999999876 1 77888885
No 95
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=91.29 E-value=0.23 Score=49.88 Aligned_cols=36 Identities=28% Similarity=0.564 Sum_probs=29.4
Q ss_pred CCCChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHHhh
Q 005126 648 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 648 ~RP~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+|++.++++.+. ..+..||+|||+.|.+++.+.+.+
T Consensus 162 ~~~~~~~~~~~~-----~~~~~vyicGp~~m~~~~~~~l~~ 197 (211)
T cd06185 162 GRLDLAALLAAP-----PAGTHVYVCGPEGMMDAVRAAAAA 197 (211)
T ss_pred CccCHHHHhccC-----CCCCEEEEECCHHHHHHHHHHHHH
Confidence 688888887653 224579999999999999999977
No 96
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=91.17 E-value=0.26 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.7
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+.-||+|||+.|.+++.+.+.+
T Consensus 197 ~~~v~~CGp~~~~~~v~~~l~~ 218 (232)
T cd06212 197 GCDVYLCGPPPMIDAALPVLEM 218 (232)
T ss_pred CCEEEEECCHHHHHHHHHHHHH
Confidence 3459999999999999999987
No 97
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=90.41 E-value=0.24 Score=51.00 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.3
Q ss_pred ceEEEEEeCchhhHHHHHHHHhh
Q 005126 666 SDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 666 ~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
++--||+|||+.|.+++++.+++
T Consensus 200 ~~~~vyiCGp~~m~~~~~~~l~~ 222 (241)
T cd06195 200 ETSHVMLCGNPQMIDDTQELLKE 222 (241)
T ss_pred ccCEEEEeCCHHHHHHHHHHHHH
Confidence 34569999999999999999987
No 98
>PRK08051 fre FMN reductase; Validated
Probab=88.12 E-value=0.36 Score=49.58 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=18.5
Q ss_pred EEEEeCchhhHHHHHHHH-hh
Q 005126 669 GVLVCGPESMKESVAKTS-QR 688 (713)
Q Consensus 669 GV~vCGP~~l~~~va~~c-~~ 688 (713)
-||+|||+.|.++|.+.+ .+
T Consensus 196 ~vyicGp~~m~~~v~~~l~~~ 216 (232)
T PRK08051 196 DIYIAGRFEMAKIARELFCRE 216 (232)
T ss_pred EEEEECCHHHHHHHHHHHHHH
Confidence 499999999999999999 76
No 99
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=87.31 E-value=0.62 Score=48.10 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=26.8
Q ss_pred CCCChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHHhh
Q 005126 648 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 648 ~RP~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+|.+...+- +. ....+.-||+|||++|.+++.+..++
T Consensus 194 g~~~~~~l~-~~---~~~~~~~v~icGp~~m~~~v~~~l~~ 230 (247)
T cd06184 194 GRIDLALLR-EL---LLPADADFYLCGPVPFMQAVREGLKA 230 (247)
T ss_pred CccCHHHHh-hc---cCCCCCEEEEECCHHHHHHHHHHHHH
Confidence 677654332 21 12346779999999999999999977
No 100
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=86.71 E-value=0.75 Score=40.72 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=17.8
Q ss_pred CCceEEEEEeCchhhHHHHHH
Q 005126 664 AGSDIGVLVCGPESMKESVAK 684 (713)
Q Consensus 664 ~~~~vGV~vCGP~~l~~~va~ 684 (713)
...+.-||+|||++|.++|++
T Consensus 89 ~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 89 DPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp CTTTEEEEEEEEHHHHHHHHH
T ss_pred CCCCCEEEEECCHHHHHHhcC
Confidence 345778999999999999875
No 101
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=86.20 E-value=0.93 Score=46.16 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=26.8
Q ss_pred eEEEEEeCchhhHHHHHHHHhhhhhhhhccCCCCCCceeeeccCcc
Q 005126 667 DIGVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFT 712 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~~~~~~~~~~~~~~~~f~fhs~sF~ 712 (713)
+..||+|||++|.+++++.+++.. -+.=+.|.|.|+
T Consensus 193 ~~~v~icGp~~m~~~~~~~l~~~G----------~~~~~i~~E~F~ 228 (228)
T cd06209 193 DVDVYLCGPPPMVDAVRSWLDEQG----------IEPANFYYEKFT 228 (228)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcC----------CCHHHEeeeccC
Confidence 556999999999999999998721 233456667764
No 102
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=86.06 E-value=0.94 Score=47.97 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.6
Q ss_pred ceEEEEEeCchhhHHHHHHHHhh
Q 005126 666 SDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 666 ~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
.+.-||+|||+.|.+++++.+.+
T Consensus 248 ~~~~vyiCGP~~m~~~~~~~l~~ 270 (283)
T cd06188 248 EDIEFYLCGPPPMNSAVIKMLDD 270 (283)
T ss_pred CCeEEEEECCHHHHHHHHHHHHH
Confidence 45679999999999999999977
No 103
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=85.52 E-value=0.6 Score=47.55 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.6
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+.-||+|||++|.+++.+..++
T Consensus 197 ~~~v~icGp~~m~~~~~~~l~~ 218 (231)
T cd06215 197 ERTVFVCGPAGFMKAVKSLLAE 218 (231)
T ss_pred CCeEEEECCHHHHHHHHHHHHH
Confidence 3469999999999999999976
No 104
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=84.96 E-value=1.3 Score=45.38 Aligned_cols=21 Identities=19% Similarity=0.563 Sum_probs=18.9
Q ss_pred EEEEEeCchhhHHHHHHHHhh
Q 005126 668 IGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 668 vGV~vCGP~~l~~~va~~c~~ 688 (713)
--||+|||+.|.+++++..++
T Consensus 202 ~~vyicGp~~m~~~~~~~l~~ 222 (236)
T cd06210 202 PDIYLCGPPGMVDAAFAAARE 222 (236)
T ss_pred cEEEEeCCHHHHHHHHHHHHH
Confidence 348999999999999999987
No 105
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=84.24 E-value=0.72 Score=46.88 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.7
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+.-||+|||+.|.+++.++.++
T Consensus 190 ~~~v~vCGp~~m~~~~~~~l~~ 211 (224)
T cd06189 190 DFDVYACGSPEMVYAARDDFVE 211 (224)
T ss_pred ccEEEEECCHHHHHHHHHHHHH
Confidence 4559999999999999999977
No 106
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=84.14 E-value=1.3 Score=45.14 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+--||+|||+.|.+++++++.+
T Consensus 193 ~~~v~~CGp~~~~~~~~~~l~~ 214 (227)
T cd06213 193 ATEAYLCGPPAMIDAAIAVLRA 214 (227)
T ss_pred CCEEEEECCHHHHHHHHHHHHH
Confidence 4459999999999999999977
No 107
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=83.90 E-value=0.81 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.8
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+--||+|||+.|.++|.+++++
T Consensus 201 ~~~v~icGp~~m~~~v~~~l~~ 222 (235)
T cd06217 201 GRRVYVCGPPAFVEAATRLLLE 222 (235)
T ss_pred CCEEEEECCHHHHHHHHHHHHH
Confidence 3459999999999999999987
No 108
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=83.48 E-value=0.92 Score=45.79 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.6
Q ss_pred ceEEEEEeCchhhHHHHHHHHhh
Q 005126 666 SDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 666 ~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
.+.-||+|||+.|.+++++.+.+
T Consensus 180 ~~~~vyicGp~~m~~~v~~~l~~ 202 (216)
T cd06198 180 ADADVWFCGPPGMADALEKGLRA 202 (216)
T ss_pred CCCeEEEECcHHHHHHHHHHHHH
Confidence 45679999999999999999987
No 109
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=82.44 E-value=1.8 Score=43.78 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=26.0
Q ss_pred CCCChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHHhh
Q 005126 648 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 648 ~RP~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
.+-...+.+.+... ...+.-||+|||+.|.+++.+..++
T Consensus 173 ~~g~~~~~~~~~~~--~~~~~~v~vcGp~~~~~~v~~~l~~ 211 (224)
T cd06187 173 RRGLVTDVVGRDGP--DWADHDIYICGPPAMVDATVDALLA 211 (224)
T ss_pred CcccHHHHHHHhcc--ccccCEEEEECCHHHHHHHHHHHHH
Confidence 34445555543321 1134559999999999999999876
No 110
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=81.83 E-value=1 Score=45.89 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=19.2
Q ss_pred EEEEEeCchhhHHHHHHHHhh
Q 005126 668 IGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 668 vGV~vCGP~~l~~~va~~c~~ 688 (713)
--||+|||+.|.+++++.+++
T Consensus 198 ~~vyicGp~~mv~~~~~~l~~ 218 (231)
T cd06191 198 REAFICGPAGMMDAVETALKE 218 (231)
T ss_pred CeEEEECCHHHHHHHHHHHHH
Confidence 469999999999999999976
No 111
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=81.14 E-value=0.8 Score=49.55 Aligned_cols=22 Identities=27% Similarity=0.685 Sum_probs=19.1
Q ss_pred EEEEeCchhhHHHHHHHHhhhh
Q 005126 669 GVLVCGPESMKESVAKTSQRKS 690 (713)
Q Consensus 669 GV~vCGP~~l~~~va~~c~~~~ 690 (713)
-||.|||++|.+++++.-+..+
T Consensus 403 sv~fCGP~~m~dsL~r~l~~~~ 424 (438)
T COG4097 403 SVFFCGPIKMMDSLRRDLKKQN 424 (438)
T ss_pred eEEEEcCHHHHHHHHHHHHHcC
Confidence 5999999999999999877633
No 112
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=80.86 E-value=1.5 Score=45.20 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.8
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+.-||+|||++|.++++++.++
T Consensus 210 ~~~vyvcGp~~m~~~~~~~l~~ 231 (243)
T cd06216 210 DRQVYACGPPGFLDAAEELLEA 231 (243)
T ss_pred cCeEEEECCHHHHHHHHHHHHH
Confidence 3579999999999999999977
No 113
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=80.71 E-value=2.6 Score=43.68 Aligned_cols=39 Identities=28% Similarity=0.427 Sum_probs=28.7
Q ss_pred CCCChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHHhh
Q 005126 648 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 648 ~RP~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
.+....+.+.+..... .+--||+|||+.|.+++.+.+++
T Consensus 163 ~~g~v~~~l~~~~~~~--~~~~vyiCGp~~mv~~~~~~L~~ 201 (246)
T cd06218 163 TKGFVTDLLKELLAEA--RPDVVYACGPEPMLKAVAELAAE 201 (246)
T ss_pred cceehHHHHHHHhhcc--CCCEEEEECCHHHHHHHHHHHHh
Confidence 3455666666544322 34689999999999999999976
No 114
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=80.11 E-value=2.4 Score=43.43 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=31.2
Q ss_pred CChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHHhhhhhhhhccCCCCCCceeeeccCc
Q 005126 650 PNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 711 (713)
Q Consensus 650 P~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c~~~~~~~~~~~~~~~~~f~fhs~sF 711 (713)
...++++.+.. ...+--||+|||+.|.+++.+..++.. - .-++|.|+|
T Consensus 153 g~~~~~l~~~~---~~~~~~vyicGp~~m~~~~~~~L~~~g---------~--~~~i~~e~f 200 (233)
T cd06220 153 GFVTDLLKELD---LEEYDAIYVCGPEIMMYKVLEILDERG---------V--RAQFSLERY 200 (233)
T ss_pred ceehHHHhhhc---ccCCCEEEEECCHHHHHHHHHHHHhcC---------C--cEEEEeccc
Confidence 34455555543 112225999999999999999987621 1 456666666
No 115
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=80.10 E-value=1.3 Score=48.19 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=18.4
Q ss_pred EEEEeCchhhHHHHHHHHhh
Q 005126 669 GVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 669 GV~vCGP~~l~~~va~~c~~ 688 (713)
-||+|||+.|.++++++.++
T Consensus 205 ~vyiCGP~~m~~~v~~~l~~ 224 (332)
T PRK10684 205 TVMTCGPAPYMDWVEQEVKA 224 (332)
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 49999999999999999876
No 116
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=78.93 E-value=1.4 Score=48.01 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=19.0
Q ss_pred EEEEEeCchhhHHHHHHHHhh
Q 005126 668 IGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 668 vGV~vCGP~~l~~~va~~c~~ 688 (713)
.-||+|||+.|.+++.+++.+
T Consensus 302 ~~vy~CGp~~mv~~~~~~L~~ 322 (340)
T PRK11872 302 FDMYLCGPPPMVEAVKQWLDE 322 (340)
T ss_pred CEEEEeCCHHHHHHHHHHHHH
Confidence 359999999999999999976
No 117
>PRK05713 hypothetical protein; Provisional
Probab=78.71 E-value=1.5 Score=47.29 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.9
Q ss_pred EEEEEeCchhhHHHHHHHHhh
Q 005126 668 IGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 668 vGV~vCGP~~l~~~va~~c~~ 688 (713)
-=||+|||+.|.+++.+.+++
T Consensus 275 ~~vyiCGp~~mv~~~~~~L~~ 295 (312)
T PRK05713 275 TMALLCGSPASVERFARRLYL 295 (312)
T ss_pred eEEEEeCCHHHHHHHHHHHHH
Confidence 349999999999999999976
No 118
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=77.90 E-value=3 Score=45.63 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=19.0
Q ss_pred EEEEEeCchhhHHHHHHHHhh
Q 005126 668 IGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 668 vGV~vCGP~~l~~~va~~c~~ 688 (713)
--||+|||++|.++++++..+
T Consensus 208 ~~vyiCGp~~m~~~v~~~L~~ 228 (352)
T TIGR02160 208 DEWFLCGPQAMVDDAEQALTG 228 (352)
T ss_pred CEEEEECCHHHHHHHHHHHHH
Confidence 459999999999999999876
No 119
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=77.72 E-value=2.7 Score=43.07 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.6
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+--||+|||+.|.+++.++..+
T Consensus 204 ~~~vyvCGp~~m~~~~~~~L~~ 225 (238)
T cd06211 204 GHKAYLCGPPPMIDACIKTLMQ 225 (238)
T ss_pred cCEEEEECCHHHHHHHHHHHHH
Confidence 4469999999999999999877
No 120
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=76.98 E-value=2 Score=43.40 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.0
Q ss_pred ceEEEEEeCchhhHHHHHHHHhh
Q 005126 666 SDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 666 ~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
++--||+|||+.|.+++++...+
T Consensus 186 ~~~~vyicGp~~m~~~~~~~L~~ 208 (222)
T cd06194 186 RDDVVYLCGAPSMVNAVRRRAFL 208 (222)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHH
Confidence 34569999999999999999876
No 121
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=73.82 E-value=4.8 Score=41.16 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.2
Q ss_pred ceEEEEEeCchhhHHHHHHHHhh
Q 005126 666 SDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 666 ~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
++.-||+|||+.|.+++.++..+
T Consensus 205 ~~~~v~icGp~~mv~~v~~~l~~ 227 (241)
T cd06214 205 EFDEAFLCGPEPMMDAVEAALLE 227 (241)
T ss_pred cCcEEEEECCHHHHHHHHHHHHH
Confidence 45669999999999999999876
No 122
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=73.25 E-value=2.6 Score=47.20 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.7
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+.-||+|||+.|.+++.+.+.+
T Consensus 373 ~~~vyiCGP~~m~~av~~~L~~ 394 (409)
T PRK05464 373 DCEYYMCGPPMMNAAVIKMLKD 394 (409)
T ss_pred CeEEEEECCHHHHHHHHHHHHH
Confidence 4569999999999999999977
No 123
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=73.15 E-value=3.7 Score=45.72 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.7
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+.-||+|||+.|.+++.+...+
T Consensus 358 ~~~vyiCGp~~m~~~v~~~L~~ 379 (399)
T PRK13289 358 DADFYFCGPVPFMQFVAKQLLE 379 (399)
T ss_pred CCEEEEECCHHHHHHHHHHHHH
Confidence 4569999999999999999876
No 124
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=72.97 E-value=2.5 Score=45.97 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.4
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+.-||+|||+.|.+++.+...+
T Consensus 298 ~~~vy~CGp~~m~~~~~~~l~~ 319 (339)
T PRK07609 298 GHQVYACGSPVMVYAARDDFVA 319 (339)
T ss_pred CCEEEEECCHHHHHHHHHHHHH
Confidence 3459999999999999999877
No 125
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=72.76 E-value=3 Score=42.48 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=19.6
Q ss_pred ceEEEEEeCchhhHHHHHHHHhh
Q 005126 666 SDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 666 ~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
.+--||+|||++|.+.+.+..++
T Consensus 195 ~~~~vyiCGp~~m~~~v~~~l~~ 217 (232)
T cd06190 195 AEFEFYFAGPPPMVDAVQRMLMI 217 (232)
T ss_pred cccEEEEECCHHHHHHHHHHHHH
Confidence 35679999999999999888765
No 126
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=72.27 E-value=2.5 Score=42.64 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=18.9
Q ss_pred EEEEEeCchhhHHHHHHHHhh
Q 005126 668 IGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 668 vGV~vCGP~~l~~~va~~c~~ 688 (713)
--||+|||+.|.+++++.+.+
T Consensus 187 ~~vyiCGp~~m~~~~~~~l~~ 207 (218)
T cd06196 187 QHFYVCGPPPMEEAINGALKE 207 (218)
T ss_pred CEEEEECCHHHHHHHHHHHHH
Confidence 349999999999999999977
No 127
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=70.05 E-value=5.9 Score=41.97 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.9
Q ss_pred EEEEeCchhhHHHHHHHHhhh
Q 005126 669 GVLVCGPESMKESVAKTSQRK 689 (713)
Q Consensus 669 GV~vCGP~~l~~~va~~c~~~ 689 (713)
=||+|||+.|.+.|++.+++.
T Consensus 183 ~vy~CGP~~M~~~v~~~l~~~ 203 (281)
T PRK06222 183 RVVAIGPVIMMKFVAELTKPY 203 (281)
T ss_pred EEEEECCHHHHHHHHHHHHhc
Confidence 399999999999999999774
No 128
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.96 E-value=3.1 Score=49.50 Aligned_cols=101 Identities=21% Similarity=0.316 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchhhHH--hhhhhhhHHHHHHHHHHHHHHHHhhhhhhHH-H--
Q 005126 106 SSFEILLVFLFVIFLVWTYYARISNDFKKLMPVKSLKLDTWQL--KYLRVATRFGLLAEACLALLLLPILRGLSLF-R-- 180 (713)
Q Consensus 106 tr~e~l~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~va~r~G~la~~~l~ll~l~~~Rn~~l~-~-- 180 (713)
-+.-...++.|+.+++..+...... | .... ..+. ....++...+.....+++++++++|||.... +
T Consensus 134 ~~~~~~~~~~~l~~~~~lf~~~~~~-y---~~~~-----~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~ 204 (646)
T KOG0039|consen 134 LWLRVWVLFLWLGLNVGLFTWRFLQ-Y---VYLG-----TRHILGLCLALARGSAETLNFNMALILLPVCRNRLTFLRCS 204 (646)
T ss_pred ceEeeeeehHHHHHHHHHHHHHHHH-H---Hhhh-----hhhhhhheeeeeccccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 4555667777777776655443211 1 0000 0000 0112344445566688999999999998643 1
Q ss_pred -hh--CCCchhhHHHHHHHHHHHHHHHHHhhccceeec
Q 005126 181 -LL--GIQFEASVRYHIWLGTAMIFFATIHGGSTLFVW 215 (713)
Q Consensus 181 -l~--g~~~~~~~~~Hrwlg~~~~~~~~vH~i~~~~~~ 215 (713)
.. -+|+++++.||+.+|........+|...+.++.
T Consensus 205 ~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H~w~~~~~~ 242 (646)
T KOG0039|consen 205 TFLFSYLPFDRNLNFHKLVALTIAVFILLHIWLHLVNF 242 (646)
T ss_pred hhhheEeeccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 389999999999999999999999999887653
No 129
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=68.18 E-value=3.9 Score=45.79 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.6
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+.-||+|||+.|.+++.+.+++
T Consensus 369 ~~~vylCGP~~m~~av~~~L~~ 390 (405)
T TIGR01941 369 DCEFYMCGPPMMNAAVIKMLED 390 (405)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH
Confidence 4459999999999999999977
No 130
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=66.93 E-value=4 Score=40.96 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.2
Q ss_pred ceEEEEEeCchhhHHHHHHHHhh
Q 005126 666 SDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 666 ~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
++.-||+|||+.|.+.+++...+
T Consensus 190 ~~~~~yvCGp~~m~~~~~~~L~~ 212 (223)
T cd00322 190 SGALVYICGPPAMAKAVREALVS 212 (223)
T ss_pred cCCEEEEECCHHHHHHHHHHHHH
Confidence 45679999999999999999876
No 131
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=66.08 E-value=4.3 Score=42.13 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.4
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+--||+|||+.|.+++.+.+.+
T Consensus 206 ~~~vy~CGp~~Mv~~~~~~l~~ 227 (248)
T PRK10926 206 TSHVMLCGNPQMVRDTQQLLKE 227 (248)
T ss_pred CCEEEEECCHHHHHHHHHHHHH
Confidence 3459999999999999999976
No 132
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=63.97 E-value=6.2 Score=41.89 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHH
Q 005126 648 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTS 686 (713)
Q Consensus 648 ~RP~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c 686 (713)
+|.+...|-+.+.....+ ++=|++|||++|.+.++...
T Consensus 235 g~It~~~i~~~l~~~~~~-~~~~liCGPp~m~~~~~~~~ 272 (286)
T KOG0534|consen 235 GFITKDLIKEHLPPPKEG-ETLVLICGPPPMINGAAQGN 272 (286)
T ss_pred CccCHHHHHhhCCCCCCC-CeEEEEECCHHHHhHHHHHH
Confidence 577766665555444444 68899999999998555443
No 133
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=60.88 E-value=9.8 Score=40.36 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=18.8
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+.-||+|||++|.++|.+.+.+
T Consensus 239 ~~~vYiCGp~~m~~~v~~~L~~ 260 (286)
T cd06208 239 NTHVYICGLKGMEPGVDDALTS 260 (286)
T ss_pred CcEEEEeCCchHHHHHHHHHHH
Confidence 3459999999999999888876
No 134
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=58.21 E-value=7.1 Score=41.55 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=17.3
Q ss_pred EEEEEeCchhhHHHHHHHHhh
Q 005126 668 IGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 668 vGV~vCGP~~l~~~va~~c~~ 688 (713)
.-||+|||+.|.++|.+...+
T Consensus 246 ~~vyiCGp~~M~~~v~~~L~~ 266 (289)
T cd06201 246 AQIMVCGSRAMAQGVAAVLEE 266 (289)
T ss_pred cEEEEECCHHHHHHHHHHHHH
Confidence 459999999998888777654
No 135
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=58.05 E-value=14 Score=38.25 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=17.7
Q ss_pred EEEeCchhhHHHHHHHHhh
Q 005126 670 VLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 670 V~vCGP~~l~~~va~~c~~ 688 (713)
||+|||+.|.+.+++..++
T Consensus 183 vyiCGP~~m~~~~~~~l~~ 201 (248)
T cd06219 183 VIAIGPPIMMKAVSELTRP 201 (248)
T ss_pred EEEECCHHHHHHHHHHHHH
Confidence 9999999999999998875
No 136
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=56.01 E-value=8.1 Score=39.60 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.3
Q ss_pred ceEEEEEeCchhhHHHHHHHHhh
Q 005126 666 SDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 666 ~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
.+.-||+|||++|.+++++.+++
T Consensus 197 ~~~~vyicGp~~mv~~v~~~l~~ 219 (235)
T cd06193 197 GDGYVWIAGEAGAVRALRRHLRE 219 (235)
T ss_pred CCeEEEEEccHHHHHHHHHHHHH
Confidence 34569999999999999999976
No 137
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=55.41 E-value=7.9 Score=40.71 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=17.3
Q ss_pred EEEEeCchh-hHHHHHHHHhh
Q 005126 669 GVLVCGPES-MKESVAKTSQR 688 (713)
Q Consensus 669 GV~vCGP~~-l~~~va~~c~~ 688 (713)
-||+|||+. |.++|.+++.+
T Consensus 216 ~vyvCGp~~~m~~~v~~~L~~ 236 (267)
T cd06182 216 HIYVCGDAKSMAKDVEDALVK 236 (267)
T ss_pred EEEEECCcccchHHHHHHHHH
Confidence 699999999 98888877766
No 138
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=54.82 E-value=11 Score=39.68 Aligned_cols=39 Identities=23% Similarity=0.473 Sum_probs=29.1
Q ss_pred ecCCCChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHHhh
Q 005126 646 FGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 646 ~g~RP~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
..+|+|...+..... ... -=+|+|||.+|.+.|+..+.+
T Consensus 179 ~~g~~~~~~l~~~~~---~~~-r~~y~CGp~~fm~av~~~l~~ 217 (266)
T COG1018 179 LQGRIDVSRLLSAAP---DGG-REVYLCGPGPFMQAVRLALEA 217 (266)
T ss_pred ccccccHHHHhccCC---CCC-CEEEEECCHHHHHHHHHHHHH
Confidence 357888877765431 112 349999999999999999876
No 139
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=53.31 E-value=9.4 Score=39.50 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.8
Q ss_pred EEEEeCch-hhHHHHHHHHhh
Q 005126 669 GVLVCGPE-SMKESVAKTSQR 688 (713)
Q Consensus 669 GV~vCGP~-~l~~~va~~c~~ 688 (713)
=||+|||+ .|.++|.+...+
T Consensus 204 ~vy~CGp~~~m~~~v~~~l~~ 224 (245)
T cd06200 204 AIYVCGSLQGMAPGVDAVLDE 224 (245)
T ss_pred EEEEECCchhhhHHHHHHHHH
Confidence 39999999 999888887654
No 140
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=53.24 E-value=2.1e+02 Score=27.41 Aligned_cols=31 Identities=16% Similarity=-0.007 Sum_probs=25.5
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhcccee
Q 005126 183 GIQFEASVRYHIWLGTAMIFFATIHGGSTLF 213 (713)
Q Consensus 183 g~~~~~~~~~Hrwlg~~~~~~~~vH~i~~~~ 213 (713)
+-..+....+|+++|.+.++...++.+..+.
T Consensus 40 ~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~ 70 (188)
T PF00033_consen 40 FPGRQLLRWLHFSLGIVFLALFLLRILWRLF 70 (188)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3357888999999999999999999876543
No 141
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=52.28 E-value=18 Score=38.90 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=17.1
Q ss_pred EEEEEeCchhhHHHHHHHHhh
Q 005126 668 IGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 668 vGV~vCGP~~l~~~va~~c~~ 688 (713)
-=||+|||++|.+.+.+.+.+
T Consensus 260 ~~vYiCGp~~mv~~v~~~L~~ 280 (307)
T PLN03116 260 AHIYFCGLKGMMPGIQDTLKR 280 (307)
T ss_pred cEEEEeCCHHHHHHHHHHHHH
Confidence 349999999999888777665
No 142
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=51.07 E-value=14 Score=37.47 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.4
Q ss_pred ceEEEEEeCchhhHH-HHHHHHhh
Q 005126 666 SDIGVLVCGPESMKE-SVAKTSQR 688 (713)
Q Consensus 666 ~~vGV~vCGP~~l~~-~va~~c~~ 688 (713)
.+.-||+|||++|.+ ++++.+++
T Consensus 200 ~~~~~~icGp~~~~~~~~~~~l~~ 223 (234)
T cd06183 200 EDTLVLVCGPPPMIEGAVKGLLKE 223 (234)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHH
Confidence 456799999999999 99999976
No 143
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=50.43 E-value=11 Score=39.98 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.3
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+--||+|||+.|.+++++..++
T Consensus 212 ~~~vyiCGP~~m~~~v~~~L~~ 233 (289)
T PRK08345 212 NTYAAICGPPVMYKFVFKELIN 233 (289)
T ss_pred ccEEEEECCHHHHHHHHHHHHH
Confidence 3459999999999999998876
No 144
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=48.85 E-value=13 Score=38.33 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.9
Q ss_pred EEEEeCchhhHHHHHHHHhhh
Q 005126 669 GVLVCGPESMKESVAKTSQRK 689 (713)
Q Consensus 669 GV~vCGP~~l~~~va~~c~~~ 689 (713)
-||+|||+.|.+++++..++.
T Consensus 180 ~v~icGp~~mv~~~~~~l~~~ 200 (243)
T cd06192 180 RIIVAGSDIMMKAVVEALDEW 200 (243)
T ss_pred EEEEECCHHHHHHHHHHHHhh
Confidence 599999999999999998773
No 145
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=48.71 E-value=13 Score=38.70 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.1
Q ss_pred eEEEEEeCchhhHHHHHHHHhhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQRK 689 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~~ 689 (713)
+--||+|||+.|.+++.+..++.
T Consensus 190 ~~~vyicGp~~mv~~~~~~L~~~ 212 (253)
T cd06221 190 NTVAIVCGPPIMMRFVAKELLKL 212 (253)
T ss_pred CcEEEEECCHHHHHHHHHHHHHc
Confidence 45699999999999999999773
No 146
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=47.00 E-value=20 Score=37.11 Aligned_cols=36 Identities=25% Similarity=0.537 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHHhh
Q 005126 649 RPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 649 RP~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+....+++.+.. ...+ -||+|||+.|.+++++..++
T Consensus 167 ~g~v~~~l~~~~---~~~~-~vyvCGp~~m~~~v~~~l~~ 202 (250)
T PRK00054 167 KGFVTDVLDELD---SEYD-AIYSCGPEIMMKKVVEILKE 202 (250)
T ss_pred ccchhHhHhhhc---cCCC-EEEEeCCHHHHHHHHHHHHH
Confidence 344555555442 1112 49999999999999999877
No 147
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=45.68 E-value=14 Score=41.05 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=21.9
Q ss_pred CCeEEEEEecCCCCccCCCeEEEEeCCC
Q 005126 322 SKAIELILPKHAGLKFTPTSVIFMKIPS 349 (713)
Q Consensus 322 ~~~v~l~l~~~~~~~~~pGQ~v~L~~P~ 349 (713)
.++..+++..+.+..|+||+++.|..+.
T Consensus 15 ~~~~~~~~~~~~~~~y~~GD~l~v~P~N 42 (384)
T cd06206 15 PSKRHLELRLPDGMTYRAGDYLAVLPRN 42 (384)
T ss_pred ccEEEEEEECCCCCccCCCCEEEEECCC
Confidence 4566777776567899999999998764
No 148
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=44.29 E-value=29 Score=38.32 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=16.8
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+.-||+|||++|.++|.++..+
T Consensus 319 ~~~vYiCGp~~M~~~V~~~l~~ 340 (367)
T PLN03115 319 NTYVYMCGLKGMEKGIDDIMVS 340 (367)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH
Confidence 4559999999997777666544
No 149
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=44.12 E-value=16 Score=39.75 Aligned_cols=18 Identities=33% Similarity=0.709 Sum_probs=15.8
Q ss_pred EEEEEeCchhhHHHHHHH
Q 005126 668 IGVLVCGPESMKESVAKT 685 (713)
Q Consensus 668 vGV~vCGP~~l~~~va~~ 685 (713)
--||+|||+.|.+.|+..
T Consensus 264 ~~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 264 KIIMLCGPDQLLNHVAGT 281 (325)
T ss_pred cEEEEeCCHHHHHHhcCC
Confidence 348999999999999876
No 150
>PRK05802 hypothetical protein; Provisional
Probab=40.93 E-value=19 Score=38.96 Aligned_cols=21 Identities=5% Similarity=0.256 Sum_probs=18.9
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
++ ||+|||+.|.+.|+++..+
T Consensus 255 ~~-vy~CGP~~M~k~v~~~l~~ 275 (320)
T PRK05802 255 NL-IHCGGSDILHYKIIEYLDK 275 (320)
T ss_pred CE-EEEECCHHHHHHHHHHHhh
Confidence 44 9999999999999999876
No 151
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=40.22 E-value=21 Score=37.25 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.4
Q ss_pred eEEEEEeCchhhHHHHHHHHhhhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQRKS 690 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~~~ 690 (713)
.-=||+|||+.|.+.+++...++.
T Consensus 192 ~~~v~~cGp~~M~~~v~~~~~~~g 215 (252)
T COG0543 192 VDDVYICGPPAMVKAVREKLKEYG 215 (252)
T ss_pred CCEEEEECCHHHHHHHHHHHHhcC
Confidence 455999999999999999987744
No 152
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=37.92 E-value=23 Score=36.95 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.2
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+--||+|||+.|.+++++...+
T Consensus 190 ~~~v~lCGp~~mv~~~~~~L~~ 211 (261)
T TIGR02911 190 EVQAIVVGPPIMMKFTVQELLK 211 (261)
T ss_pred ceEEEEECCHHHHHHHHHHHHH
Confidence 4469999999999999998776
No 153
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=37.87 E-value=20 Score=39.81 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=21.5
Q ss_pred CCeEEEEEec-CCCCccCCCeEEEEeCCC
Q 005126 322 SKAIELILPK-HAGLKFTPTSVIFMKIPS 349 (713)
Q Consensus 322 ~~~v~l~l~~-~~~~~~~pGQ~v~L~~P~ 349 (713)
.++.++++.. +.+..|+||+++.|..+.
T Consensus 15 ~~~~hl~l~~~~~~~~y~~GD~l~v~p~N 43 (382)
T cd06207 15 RSTRHIEFDLGGSGLSYETGDNLGIYPEN 43 (382)
T ss_pred ceEEEEEEecCCCCCccCCCCEEEEEcCC
Confidence 3467777774 357899999999998764
No 154
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=35.77 E-value=40 Score=37.82 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=15.3
Q ss_pred EEEEEeCchhh----HHHHHHHHhh
Q 005126 668 IGVLVCGPESM----KESVAKTSQR 688 (713)
Q Consensus 668 vGV~vCGP~~l----~~~va~~c~~ 688 (713)
--||+|||+.| .+.+++++.+
T Consensus 364 ~~vYiCGp~~M~~~v~~~L~~~~~~ 388 (411)
T TIGR03224 364 TYIYICGLKGMEEGVLDAFRDVCAT 388 (411)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHH
Confidence 44999999999 5555555543
No 155
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=34.81 E-value=45 Score=26.75 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=26.8
Q ss_pred HhhCCCchhhHHHHHHHHHHHHHHHHHhhcc
Q 005126 180 RLLGIQFEASVRYHIWLGTAMIFFATIHGGS 210 (713)
Q Consensus 180 ~l~g~~~~~~~~~Hrwlg~~~~~~~~vH~i~ 210 (713)
...|.+.+.....|.|.|..+++++.+|...
T Consensus 32 ~~~~~~~~~~~~iH~~~g~~~~~l~~~Hl~l 62 (64)
T PF14358_consen 32 PFLGLNKHFWRNIHLWAGYLFLILIILHLGL 62 (64)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777889999999999999999999864
No 156
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=34.67 E-value=2.8e+02 Score=26.61 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhccc
Q 005126 189 SVRYHIWLGTAMIFFATIHGGST 211 (713)
Q Consensus 189 ~~~~Hrwlg~~~~~~~~vH~i~~ 211 (713)
....|.++|.+.+...+++.+..
T Consensus 42 ~~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 42 VRNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999998887644
No 157
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=33.46 E-value=51 Score=23.59 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 005126 188 ASVRYHIWLGTAMIFFATIH 207 (713)
Q Consensus 188 ~~~~~Hrwlg~~~~~~~~vH 207 (713)
.....|+|+|.++.++..+=
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~~ 22 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFVI 22 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35688999999877766653
No 158
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=33.37 E-value=92 Score=28.66 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=18.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHhh
Q 005126 186 FEASVRYHIWLGTAMIFFATIHG 208 (713)
Q Consensus 186 ~~~~~~~Hrwlg~~~~~~~~vH~ 208 (713)
......+|||+|+.+++++..-.
T Consensus 105 r~~~~~~H~~~G~~~~~la~~t~ 127 (131)
T cd08554 105 RSSLLPFHRFFGLAIFVLAIATI 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998887643
No 159
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=32.98 E-value=28 Score=39.20 Aligned_cols=27 Identities=4% Similarity=0.196 Sum_probs=20.6
Q ss_pred CeEEEEEecC-CCCccCCCeEEEEeCCC
Q 005126 323 KAIELILPKH-AGLKFTPTSVIFMKIPS 349 (713)
Q Consensus 323 ~~v~l~l~~~-~~~~~~pGQ~v~L~~P~ 349 (713)
++..+++..+ .+.+|+||+++.|..+.
T Consensus 23 ~~~~~~ld~~~~~~~Y~~GD~l~I~p~N 50 (416)
T cd06204 23 SCLHIEFDISGSGIRYQTGDHLAVWPTN 50 (416)
T ss_pred cEEEEEEeCCCCCCcccCCCEEEEEcCC
Confidence 5667777643 37899999999998754
No 160
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=32.47 E-value=27 Score=38.44 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=21.4
Q ss_pred CCeEEEEEecC-CCCccCCCeEEEEeCCC
Q 005126 322 SKAIELILPKH-AGLKFTPTSVIFMKIPS 349 (713)
Q Consensus 322 ~~~v~l~l~~~-~~~~~~pGQ~v~L~~P~ 349 (713)
.++.++++..+ .++.|+||+++.|..+.
T Consensus 15 ~~~~~i~~~~~~~~~~y~~GD~l~i~p~N 43 (360)
T cd06199 15 KETRHIELDLEGSGLSYEPGDALGVYPTN 43 (360)
T ss_pred ccEEEEEEeCCCCCCcccCCCEEEEEcCC
Confidence 34677777644 37899999999998765
No 161
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=30.92 E-value=33 Score=38.45 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=20.9
Q ss_pred CCeEEEEEecC--CCCccCCCeEEEEeCCC
Q 005126 322 SKAIELILPKH--AGLKFTPTSVIFMKIPS 349 (713)
Q Consensus 322 ~~~v~l~l~~~--~~~~~~pGQ~v~L~~P~ 349 (713)
.+++.+++.-+ ++.+|+||+++.|..+.
T Consensus 15 ~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N 44 (406)
T cd06202 15 RSTILVKLDTNGAQELHYQPGDHVGIFPAN 44 (406)
T ss_pred ceEEEEEEECCCCCCCCCCCCCEEEEEeCC
Confidence 35666666643 47899999999998765
No 162
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=29.75 E-value=35 Score=42.64 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.9
Q ss_pred EEEEeCchhhHHHHHHHHhhh
Q 005126 669 GVLVCGPESMKESVAKTSQRK 689 (713)
Q Consensus 669 GV~vCGP~~l~~~va~~c~~~ 689 (713)
-||+|||+.|.+.|++++.+.
T Consensus 849 ~Vy~CGP~~Mmkav~~~l~~~ 869 (944)
T PRK12779 849 EVIAIGPPLMMRAVSDLTKPY 869 (944)
T ss_pred EEEEECCHHHHHHHHHHHHHc
Confidence 399999999999999999774
No 163
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=29.54 E-value=39 Score=35.34 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.7
Q ss_pred eEEEEEeCchhhHHHHHHHHhh
Q 005126 667 DIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~~va~~c~~ 688 (713)
+--||+|||+.|.+++.+.-++
T Consensus 192 ~~~vylCGp~~mv~~~~~~L~~ 213 (263)
T PRK08221 192 NMQVIVVGPPIMMKFTVLEFLK 213 (263)
T ss_pred CeEEEEECCHHHHHHHHHHHHH
Confidence 4559999999999999888765
No 164
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=28.96 E-value=50 Score=33.50 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=18.2
Q ss_pred CcceeeeeeeeCCCCCCCcEEEEEEeC
Q 005126 352 KFQWHSFSITSSSSVDDQTMSLIVKCD 378 (713)
Q Consensus 352 ~~q~HPFTIaS~p~~~~~~l~~~Ik~~ 378 (713)
+.+.|.|||+|+|..+++.+++.+...
T Consensus 176 ~l~PR~YSIsSS~~~~p~~v~ltv~vv 202 (219)
T PF00667_consen 176 PLQPRYYSISSSPLVHPNKVHLTVSVV 202 (219)
T ss_dssp B---EEEEB-S-TTTSTTEEEEEEEE-
T ss_pred CCCCcceeecccccCCCCEEEEEEEEE
Confidence 448899999999987788899988763
No 165
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=28.74 E-value=3.4e+02 Score=24.88 Aligned_cols=21 Identities=24% Similarity=0.475 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q 005126 187 EASVRYHIWLGTAMIFFATIH 207 (713)
Q Consensus 187 ~~~~~~Hrwlg~~~~~~~~vH 207 (713)
+...++||++|+++.+++.+=
T Consensus 105 ~~~~~~H~~~G~~~~~l~~~~ 125 (137)
T PF03188_consen 105 PIWNKWHRWLGYLIYVLAIAT 125 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457778999999998888763
No 166
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=28.18 E-value=45 Score=26.52 Aligned_cols=20 Identities=15% Similarity=0.577 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhcchhhh
Q 005126 14 ILICAAWIALWILKPTNLWT 33 (713)
Q Consensus 14 ~~~~~~~~~~~~~~p~~~~~ 33 (713)
.++|+.|..+|+++-+-.++
T Consensus 47 VilFLtWf~lwm~fKiv~~f 66 (67)
T PF10854_consen 47 VILFLTWFLLWMVFKIVGYF 66 (67)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45799999999998776554
No 167
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=27.16 E-value=41 Score=40.88 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=18.5
Q ss_pred EEEeCchhhHHHHHHHHhhh
Q 005126 670 VLVCGPESMKESVAKTSQRK 689 (713)
Q Consensus 670 V~vCGP~~l~~~va~~c~~~ 689 (713)
||+|||+.|.+.|++++++.
T Consensus 184 vy~CGP~~M~~~v~~~l~~~ 203 (752)
T PRK12778 184 VFAIGPAIMMKFVCLLTKKY 203 (752)
T ss_pred EEEECCHHHHHHHHHHHHHc
Confidence 89999999999999999764
No 168
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=26.76 E-value=43 Score=35.85 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=15.6
Q ss_pred eEEEEEeCchhhHH-HHHHHHhh
Q 005126 667 DIGVLVCGPESMKE-SVAKTSQR 688 (713)
Q Consensus 667 ~vGV~vCGP~~l~~-~va~~c~~ 688 (713)
+.-||+|||+.|.+ .+.+.-.+
T Consensus 267 ~~~vyiCGp~~mv~~~~~~~L~~ 289 (300)
T PTZ00319 267 KVMALMCGPPPMLQMAVKPNLEK 289 (300)
T ss_pred CeEEEEECCHHHHHHHHHHHHHH
Confidence 45699999999977 55544333
No 169
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=26.52 E-value=61 Score=37.08 Aligned_cols=67 Identities=19% Similarity=0.346 Sum_probs=51.9
Q ss_pred cccccceecCCCChHHHHHHHHhhcCC-ceEEEEE-eCchhhHHHHHHHHhhhhhhhhccCCCCCCceeeeccCc
Q 005126 639 EEEHEINFGGRPNFEEIFSELEKETAG-SDIGVLV-CGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 711 (713)
Q Consensus 639 ~~~~~~h~g~RP~~~~i~~~~~~~~~~-~~vGV~v-CGP~~l~~~va~~c~~~~~~~~~~~~~~~~~f~fhs~sF 711 (713)
.++.++-|||..++++-+.++.++++. +-|+|+. |.++.+.+++.+.|++.... -..+.+.+++..|
T Consensus 106 l~E~diVfGGe~kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi~av~~~~~~~------~~~pVi~v~t~gf 174 (466)
T TIGR01282 106 FQEKDIVFGGDKKLKKAIDEIEELFPLNKGISIQSECPVGLIGDDIEAVAKKASKE------LGKPVVPVRCEGF 174 (466)
T ss_pred CCccceecCcHHHHHHHHHHHHHhCCcccEEEEeCCChHHHhccCHHHHHHHHhhh------cCCcEEEEeCCCc
Confidence 456678899999999999999999876 6788886 66677788899998874422 1246778888777
No 170
>COG2717 Predicted membrane protein [Function unknown]
Probab=26.47 E-value=4.5e+02 Score=26.67 Aligned_cols=59 Identities=19% Similarity=0.005 Sum_probs=41.2
Q ss_pred hHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHhhCCCchhhHHHHHHHHHHHHHHHHHhhcc
Q 005126 146 WQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGS 210 (713)
Q Consensus 146 ~~~~~~~va~r~G~la~~~l~ll~l~~~Rn~~l~~l~g~~~~~~~~~Hrwlg~~~~~~~~vH~i~ 210 (713)
+++...+...-.|++|+.+|-.+.+ +-++...+-.| .+-.+.||| ++.+.+++.+|-..
T Consensus 108 ~~d~~~rpyitiG~iaflll~pLal--TS~k~~~rrlG---~rW~~LHrL-vYl~~~L~~lH~~~ 166 (209)
T COG2717 108 GLDLLKRPYITIGMIAFLLLIPLAL--TSFKWVRRRLG---KRWKKLHRL-VYLALILGALHYLW 166 (209)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHH--HhhHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3334455667788888887655544 34555566677 688999997 57888889999753
No 171
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=26.22 E-value=87 Score=21.82 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 005126 187 EASVRYHIWLGTAMIFFATIHG 208 (713)
Q Consensus 187 ~~~~~~Hrwlg~~~~~~~~vH~ 208 (713)
....++|+|+|..+.+..++=+
T Consensus 3 ~~~~~~H~~~g~~~~~~ll~~~ 24 (34)
T PF13172_consen 3 KFWRKIHRWLGLIAAIFLLLLA 24 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999998777666544
No 172
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=25.72 E-value=78 Score=21.16 Aligned_cols=19 Identities=21% Similarity=0.609 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 005126 190 VRYHIWLGTAMIFFATIHG 208 (713)
Q Consensus 190 ~~~Hrwlg~~~~~~~~vH~ 208 (713)
+.+|||++-++.+..++=+
T Consensus 2 ~~LH~w~~~i~al~~lv~~ 20 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFA 20 (27)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5789988887666655543
No 173
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.34 E-value=61 Score=36.53 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=50.4
Q ss_pred cccccceecCCCChHHHHHHHHhhcCC-ceEEEEE-eCchhhHHHHHHHHhhhhhhhhccCCCCCCceeeeccCc
Q 005126 639 EEEHEINFGGRPNFEEIFSELEKETAG-SDIGVLV-CGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 711 (713)
Q Consensus 639 ~~~~~~h~g~RP~~~~i~~~~~~~~~~-~~vGV~v-CGP~~l~~~va~~c~~~~~~~~~~~~~~~~~f~fhs~sF 711 (713)
..+.++-||+..++++...++.++++. +-|+|+. |-|+.+.+++...|++.... ...+.+..+...|
T Consensus 73 l~E~dvVfGg~~kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi~~v~~~~~~~------~~~pvi~v~t~gf 141 (421)
T cd01976 73 FQEKDIVFGGDKKLAKAIDEAYELFPLNKGISVQSECPVGLIGDDIEAVARKASKE------LGIPVVPVRCEGF 141 (421)
T ss_pred CCccceecCCHHHHHHHHHHHHHhCCCccEEEEECCChHHHhccCHHHHHHHHHHh------hCCCEEEEeCCCc
Confidence 455678899999999999999999876 6788776 66777789999999874321 1235666666665
No 174
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=25.11 E-value=82 Score=39.73 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=25.2
Q ss_pred CChHHHHHHHHhhcCCceEEEEEeCchhhHHHHHHHHhhh
Q 005126 650 PNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRK 689 (713)
Q Consensus 650 P~~~~i~~~~~~~~~~~~vGV~vCGP~~l~~~va~~c~~~ 689 (713)
....+.+.++.++ ...+. ||+|||+.|.+.|+++.+++
T Consensus 166 G~vt~~l~~~l~~-~~~d~-vy~CGP~~Mm~av~~~~~~~ 203 (1006)
T PRK12775 166 GFVTAALKEVCEK-DKPDL-VVAIGPLPMMNACVETTRPF 203 (1006)
T ss_pred CChHHHHHHHhcc-CCCCE-EEEECCHHHHHHHHHHHHHC
Confidence 3334455544322 11233 99999999999999998764
No 175
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=24.10 E-value=88 Score=34.23 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.5
Q ss_pred CeEEEEEecCC--hhhHHHHHHHHHH
Q 005126 422 DSLLLVAGGIG--ITPFLSILQEIAS 445 (713)
Q Consensus 422 ~~vvlIAGGiG--ITP~lsil~~l~~ 445 (713)
+++++.|||+| |.|.+++++++.+
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 46899999999 8999999999864
No 176
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=23.64 E-value=51 Score=42.27 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.1
Q ss_pred ceEEEEEeCchhhHHHHHHHHhh
Q 005126 666 SDIGVLVCGPESMKESVAKTSQR 688 (713)
Q Consensus 666 ~~vGV~vCGP~~l~~~va~~c~~ 688 (713)
.+.-||+|||+.|.+++.+...+
T Consensus 1128 ~~~~vyiCGP~~mv~~v~~~L~~ 1150 (1167)
T PTZ00306 1128 KDLLVAICGPPVMQRAVKADLLA 1150 (1167)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH
Confidence 45669999999999999999876
No 177
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=23.58 E-value=54 Score=36.61 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=21.5
Q ss_pred CCeEEEEEec-CCCCccCCCeEEEEeCCC
Q 005126 322 SKAIELILPK-HAGLKFTPTSVIFMKIPS 349 (713)
Q Consensus 322 ~~~v~l~l~~-~~~~~~~pGQ~v~L~~P~ 349 (713)
.++.+++++. +.+.+|+||+++.|..+.
T Consensus 15 ~~~~~i~~~~~~~~~~y~~GD~l~V~p~N 43 (398)
T cd06203 15 KTVVDLTLDLSPTGFDYQPGDTIGILPPN 43 (398)
T ss_pred ceEEEEEEecCCCCCcCCCCCEEEEeCCC
Confidence 4567777764 246899999999998764
No 178
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=23.10 E-value=49 Score=39.09 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=24.7
Q ss_pred eEEEEEEec-----CCeEEEEEec-CCCCccCCCeEEEEeCCC
Q 005126 313 CILSARVFP-----SKAIELILPK-HAGLKFTPTSVIFMKIPS 349 (713)
Q Consensus 313 ~ivs~~~l~-----~~~v~l~l~~-~~~~~~~pGQ~v~L~~P~ 349 (713)
.+++.+.+. .++.++++.. +.+..|+||+++-|..+.
T Consensus 238 ~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N 280 (597)
T TIGR01931 238 EVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKN 280 (597)
T ss_pred EEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCC
Confidence 444555443 2466677764 347899999999998654
No 179
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.55 E-value=4.7e+02 Score=24.88 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 005126 187 EASVRYHIWLGTAMIFFATIHG 208 (713)
Q Consensus 187 ~~~~~~Hrwlg~~~~~~~~vH~ 208 (713)
.+...+|++.|+.+.+++++=.
T Consensus 111 ~~~~p~H~~~G~~~~~la~~t~ 132 (144)
T cd08766 111 AALLPWHVFLGLAIYYLAIATA 132 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677799999999888877643
No 180
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.85 E-value=84 Score=28.42 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhcchhh
Q 005126 13 MILICAAWIALWILKPTNLW 32 (713)
Q Consensus 13 ~~~~~~~~~~~~~~~p~~~~ 32 (713)
+++++..|+++|+...+-..
T Consensus 6 Fi~~~~~~~~~Wi~~N~~~~ 25 (108)
T PF06210_consen 6 FIIIFTVFLAVWILLNILAP 25 (108)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 45566677777777665544
No 181
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=20.16 E-value=1.9e+02 Score=25.66 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcc-----hHHHhhhhHHhHHHHHHHH-HHHHHHhhhc
Q 005126 238 GEIALVTGLVMWITSL-----PQIRRKKFEFFYYTHHLYI-IFLIFFLFHA 282 (713)
Q Consensus 238 G~ial~~~~~m~v~S~-----~~iRr~~YE~F~~~H~l~~-v~~v~~~~H~ 282 (713)
|.++++.+.+..+.+. ...+...+|.....|...+ +.+++...|.
T Consensus 2 G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~ 52 (125)
T PF01794_consen 2 GILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHG 52 (125)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655555442 2345668999999999876 5667778886
No 182
>PF06223 Phage_tail_T: Minor tail protein T; InterPro: IPR009350 This family represents the minor tail protein T of Lambda-like viruses and their prophage. The minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerisation. The protein is essential for tail assembly but is not found in the mature virion [].
Probab=20.06 E-value=50 Score=29.47 Aligned_cols=14 Identities=36% Similarity=1.080 Sum_probs=12.2
Q ss_pred eecCCCChHHHHHHH
Q 005126 645 NFGGRPNFEEIFSEL 659 (713)
Q Consensus 645 h~g~RP~~~~i~~~~ 659 (713)
.| +||||+++++++
T Consensus 5 Ef-~R~dWR~MLa~M 18 (103)
T PF06223_consen 5 EF-GRPDWRRMLAEM 18 (103)
T ss_pred Hh-cCchHHHHHHhc
Confidence 36 899999999886
Done!