BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005127
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 9/132 (6%)
Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---------N 354
E L +D G V A + EA+ G+ + Y+ L+ CS A+
Sbjct: 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85
Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
+ ++++ M K+ P +T D +++ MK+ G+ P +Y
Sbjct: 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145
Query: 415 LLVACERKDDVE 426
L RK D +
Sbjct: 146 ALFGFCRKGDAD 157
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 14/170 (8%)
Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS---------QTGDWEFACSVYDD 294
C+ G V A +Y + ++ + Y + + CS ++
Sbjct: 36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQ 95
Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-SLMGACSNAK 353
M V+P+E + A E AF+++++ K GI + SY +L G C
Sbjct: 96 MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155
Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDM 400
KA E+ HM ++ P + AL+ D D++ KT++ L D+
Sbjct: 156 A-DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 11/173 (6%)
Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA---------VDRAFDV 219
+D C+K G V +A Y R V+ + +N L+ C + A + R FD+
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
+M V V P+ T + + A ++ K + + I+ Y A+
Sbjct: 93 FKQMI--VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGF 150
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
+ GD + A V M + V+P+E L+AL+ + + ++ LQ ++
Sbjct: 151 CRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD 203
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS--- 190
+ C+K G V ++ E G++ + + Y L+ C+ A ++ G+ R
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 191 -KNVKPDRVVFNALITACGQSGAVDR-----AFDVLAEMNAEVHPVDPDHITIGALMKAC 244
K + D+VV N G AV + AFD++ +M A + P + G +
Sbjct: 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA--FGIQPRLRSYGPALFGF 150
Query: 245 ANAGQVDRAREV 256
G D+A EV
Sbjct: 151 CRKGDADKAYEV 162
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 23/194 (11%)
Query: 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
++G + E + L ++ R G+ + + ++ VC +A E+ PNP LS
Sbjct: 38 KKGDVLEALRLYDEARRNGV-QLSQYHYNVLLYVCSLAEAATES------SPNPGLSR-- 88
Query: 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
F + + + + + +T + F++ +M
Sbjct: 89 --------------GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF 134
Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
GI+P + +YG + G + G KA+ M V P+ AL+ + D+
Sbjct: 135 GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194
Query: 217 FDVLAEMNAEVHPV 230
+ L + V V
Sbjct: 195 YKTLQRLRDLVRQV 208
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 9/132 (6%)
Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---------N 354
E L +D G V A + EA+ G+ + Y+ L+ CS A+
Sbjct: 26 EALLKQKLDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85
Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
+ ++++ K+ P +T D + + K+ G+ P +Y
Sbjct: 86 LSRGFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGP 145
Query: 415 LLVACERKDDVE 426
L RK D +
Sbjct: 146 ALFGFCRKGDAD 157
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-SLMGACSNAKNWQKA 358
V+P+E + A E AF+ +++ K GI + SY +L G C KA
Sbjct: 101 VVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDA-DKA 159
Query: 359 LELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDM 400
E+ H ++ P + AL+ D D++ KT++ L D+
Sbjct: 160 YEVDAHXVESEVVPEEPELAALLKVSXDTKNADKVYKTLQRLRDL 204
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 11/132 (8%)
Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS--- 190
+ C+K G V ++ E G++ + + Y L+ C+ A ++ G+ R
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 191 -KNVKPDRVVFNALITACGQSGAV-----DRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
K D+VV N G AV + AFD + + A + P + G +
Sbjct: 93 FKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKA--FGIQPRLRSYGPALFGF 150
Query: 245 ANAGQVDRAREV 256
G D+A EV
Sbjct: 151 CRKGDADKAYEV 162
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 11/173 (6%)
Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA---------VDRAFDV 219
+D C+K G V +A Y R V+ + +N L+ C + A + R FD+
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
+ V V P+ T + + A + K + I+ Y A+
Sbjct: 93 FKQXI--VDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGF 150
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
+ GD + A V + V+P+E L+AL+ + + ++ LQ ++
Sbjct: 151 CRKGDADKAYEVDAHXVESEVVPEEPELAALLKVSXDTKNADKVYKTLQRLRD 203
>pdb|3EDV|A Chain A, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
pdb|3EDV|B Chain B, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
Length = 323
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 67 FFNVCKSQKA----IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
+ C+S++ + FRFF +V + L +++ + A K + + L + G
Sbjct: 204 LLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQG 263
Query: 123 LKADCKLYTTLITTCAKSGK 142
+KA+ TTC + GK
Sbjct: 264 IKAEIDARNDSFTTCIELGK 283
>pdb|3GZT|B Chain B, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|F Chain F, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|G Chain G, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|H Chain H, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|I Chain I, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|J Chain J, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|K Chain K, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|L Chain L, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|M Chain M, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|N Chain N, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|O Chain O, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|P Chain P, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|Q Chain Q, Vp7 Recoated Rotavirus Dlp
Length = 255
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 21/95 (22%)
Query: 585 EIHTAKVYLLT-ILKGLRHRL---AAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTT 640
E+ TA+ ++T ++ G+ H+L A + N L P E ++ VGG +DI T
Sbjct: 160 EVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPT 219
Query: 641 QAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQ 675
A R+ +RIN K+W+Q
Sbjct: 220 TAPQT--ERM------------MRIN---WKKWWQ 237
>pdb|3FMG|A Chain A, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
pdb|3IYU|A Chain A, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|F Chain F, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|G Chain G, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|H Chain H, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|I Chain I, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|J Chain J, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|K Chain K, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|L Chain L, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|M Chain M, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|N Chain N, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|O Chain O, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|P Chain P, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Q Chain Q, Atomic Model Of An Infectious Rotavirus Particle
Length = 276
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 585 EIHTAKVYLLT-ILKGLRHRL---AAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTT 640
E+ TA+ ++T ++ G+ H+L A + N L P E ++ VGG +DI T
Sbjct: 167 EVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPT 226
Query: 641 QA 642
A
Sbjct: 227 TA 228
>pdb|3HQY|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HQZ|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HR1|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 380
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 39/143 (27%)
Query: 6 KNMLQFPYPNGKHA-NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL------D 58
KN + PY N KHA AH + L + N L D+ERKGLL D
Sbjct: 103 KNYRRVPYHNWKHAVTVAHCMYAILQNNN------------GLFTDLERKGLLIACLCHD 150
Query: 59 MDKVYHARFFNVCKSQK-----------AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107
+D R F+ QK + E F + V L N+ ++ +S +
Sbjct: 151 LDH----RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 206
Query: 108 SEGAFQVLRLVQEAGLKADCKLY 130
QVL ++++A + D LY
Sbjct: 207 -----QVLEIIRKAIIATDLALY 224
>pdb|3HQW|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 376
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 39/143 (27%)
Query: 6 KNMLQFPYPNGKHA-NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL------D 58
KN + PY N KHA AH + L + N L D+ERKGLL D
Sbjct: 99 KNYRRVPYHNWKHAVTVAHCMYAILQNNN------------GLFTDLERKGLLIACLCHD 146
Query: 59 MDKVYHARFFNVCKSQK-----------AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107
+D R F+ QK + E F + V L N+ ++ +S +
Sbjct: 147 LDH----RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 202
Query: 108 SEGAFQVLRLVQEAGLKADCKLY 130
QVL ++++A + D LY
Sbjct: 203 -----QVLEIIRKAIIATDLALY 220
>pdb|2O8H|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVV|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVY|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|3QPN|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPO|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPP|A Chain A, Structure Of Pde10-Inhibitor Complex
Length = 362
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 39/143 (27%)
Query: 6 KNMLQFPYPNGKHA-NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL------D 58
KN + PY N KHA AH + L + N L D+ERKGLL D
Sbjct: 85 KNYRRVPYHNWKHAVTVAHCMYAILQNNN------------GLFTDLERKGLLIACLCHD 132
Query: 59 MDKVYHARFFNVCKSQK-----------AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107
+D R F+ QK + E F + V L N+ ++ +S +
Sbjct: 133 LDH----RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 188
Query: 108 SEGAFQVLRLVQEAGLKADCKLY 130
QVL ++++A + D LY
Sbjct: 189 -----QVLEIIRKAIIATDLALY 206
>pdb|3LXG|A Chain A, Crystal Structure Of Rat Phosphodiesterase 10a In Complex
Wi Web-3
Length = 308
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 39/143 (27%)
Query: 6 KNMLQFPYPNGKHA-NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL------D 58
KN + PY N KHA AH + L + N L D+ERKGLL D
Sbjct: 55 KNYRRVPYHNWKHAVTVAHCMYAILQNNN------------GLFTDLERKGLLIACLCHD 102
Query: 59 MDKVYHARFFNVCKSQK-----------AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107
+D R F+ QK + E F + V L N+ ++ +S +
Sbjct: 103 LDH----RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 158
Query: 108 SEGAFQVLRLVQEAGLKADCKLY 130
QVL ++++A + D LY
Sbjct: 159 -----QVLEIIRKAIIATDLALY 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,344,779
Number of Sequences: 62578
Number of extensions: 822052
Number of successful extensions: 1977
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1960
Number of HSP's gapped (non-prelim): 22
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)