Query 005127
Match_columns 713
No_of_seqs 899 out of 4051
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 16:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.9E-34 1.3E-38 323.0 45.7 416 27-456 82-562 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3E-32 1E-36 307.5 43.3 403 32-450 124-590 (597)
3 4g26_A Pentatricopeptide repea 100.0 4.1E-30 1.4E-34 279.5 26.2 203 253-455 9-221 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.2E-29 4.2E-34 275.7 25.8 188 235-422 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 5.3E-25 1.8E-29 234.1 48.1 376 33-422 7-386 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.2E-23 3.9E-28 223.7 47.3 363 68-443 6-371 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 4.7E-20 1.6E-24 199.8 40.9 267 91-367 59-357 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 6.6E-20 2.2E-24 198.6 40.6 316 89-416 23-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 5E-20 1.7E-24 203.0 36.8 402 30-445 11-483 (514)
10 2gw1_A Mitochondrial precursor 99.9 1.1E-19 3.8E-24 200.2 37.3 373 28-412 42-485 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.3E-18 4.4E-23 193.0 37.3 391 32-438 32-491 (537)
12 3ieg_A DNAJ homolog subfamily 99.8 2.3E-16 7.7E-21 164.6 42.0 312 91-438 2-335 (359)
13 3ieg_A DNAJ homolog subfamily 99.8 4.8E-16 1.6E-20 162.1 42.9 309 126-469 2-333 (359)
14 3fp2_A TPR repeat-containing p 99.8 2.6E-17 9E-22 182.4 34.7 374 22-409 56-495 (537)
15 3hym_B Cell division cycle pro 99.8 4.8E-16 1.6E-20 160.2 31.9 281 129-419 24-314 (330)
16 2xm6_A Protein corresponding t 99.8 9.4E-14 3.2E-18 152.0 51.3 365 44-441 26-435 (490)
17 3hym_B Cell division cycle pro 99.8 8.2E-16 2.8E-20 158.4 32.4 292 90-390 20-321 (330)
18 2ooe_A Cleavage stimulation fa 99.8 1.6E-14 5.5E-19 159.9 44.5 394 36-437 23-491 (530)
19 3spa_A Mtrpol, DNA-directed RN 99.8 3.6E-18 1.2E-22 190.2 14.0 118 339-456 127-248 (1134)
20 2xm6_A Protein corresponding t 99.7 1.4E-13 4.8E-18 150.6 49.4 338 38-405 56-434 (490)
21 3spa_A Mtrpol, DNA-directed RN 99.7 2E-18 6.8E-23 192.2 8.8 161 92-259 127-306 (1134)
22 1fch_A Peroxisomal targeting s 99.7 4.7E-16 1.6E-20 163.3 26.2 261 130-398 67-354 (368)
23 1fch_A Peroxisomal targeting s 99.7 5.7E-16 2E-20 162.6 24.0 285 74-364 38-355 (368)
24 1b89_A Protein (clathrin heavy 99.7 6.3E-17 2.2E-21 167.7 14.7 283 72-396 14-304 (449)
25 2ooe_A Cleavage stimulation fa 99.7 4.2E-13 1.4E-17 148.5 46.1 396 48-453 2-472 (530)
26 3mkr_A Coatomer subunit epsilo 99.7 1.2E-14 4.2E-19 147.0 29.2 257 30-300 4-266 (291)
27 4eqf_A PEX5-related protein; a 99.7 3E-15 1E-19 157.0 25.2 228 130-365 68-307 (365)
28 4eqf_A PEX5-related protein; a 99.7 2.1E-15 7.3E-20 158.2 23.6 267 161-433 64-351 (365)
29 1b89_A Protein (clathrin heavy 99.7 9.7E-16 3.3E-20 158.9 18.9 288 31-361 8-304 (449)
30 3cv0_A Peroxisome targeting si 99.7 1.2E-14 4.2E-19 149.4 27.3 152 244-398 148-310 (327)
31 3cv0_A Peroxisome targeting si 99.7 2.3E-14 7.9E-19 147.3 28.7 266 92-365 21-312 (327)
32 1xi4_A Clathrin heavy chain; a 99.7 5.1E-12 1.7E-16 145.5 47.5 374 24-456 984-1367(1630)
33 3mkr_A Coatomer subunit epsilo 99.6 5.3E-14 1.8E-18 142.3 26.7 248 137-402 9-263 (291)
34 4g1t_A Interferon-induced prot 99.6 3.8E-13 1.3E-17 146.3 32.3 359 61-438 51-459 (472)
35 1xi4_A Clathrin heavy chain; a 99.6 1.3E-11 4.4E-16 142.2 42.8 313 32-395 1056-1376(1630)
36 4g1t_A Interferon-induced prot 99.6 9.4E-13 3.2E-17 143.2 31.2 365 29-412 51-469 (472)
37 3uq3_A Heat shock protein STI1 99.5 2.1E-12 7.2E-17 127.5 26.1 90 309-400 144-233 (258)
38 3uq3_A Heat shock protein STI1 99.5 3.4E-12 1.2E-16 126.0 26.0 222 130-367 8-235 (258)
39 3e4b_A ALGK; tetratricopeptide 99.5 2E-12 6.9E-17 139.5 24.5 346 27-404 5-388 (452)
40 2pl2_A Hypothetical conserved 99.5 4.8E-12 1.6E-16 122.0 22.7 57 307-365 121-177 (217)
41 2pl2_A Hypothetical conserved 99.5 6.2E-12 2.1E-16 121.2 22.8 198 232-436 3-212 (217)
42 2ho1_A Type 4 fimbrial biogene 99.5 2.7E-11 9.3E-16 119.3 26.7 164 236-402 73-237 (252)
43 2ho1_A Type 4 fimbrial biogene 99.5 5E-11 1.7E-15 117.4 28.3 201 92-298 37-238 (252)
44 2vq2_A PILW, putative fimbrial 99.4 5.9E-11 2E-15 114.3 27.1 164 236-401 44-209 (225)
45 2vq2_A PILW, putative fimbrial 99.4 7.4E-11 2.5E-15 113.6 27.8 94 94-189 10-104 (225)
46 1ouv_A Conserved hypothetical 99.4 4.3E-10 1.5E-14 112.3 33.9 220 163-402 7-250 (273)
47 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.1E-11 3.7E-16 123.8 21.4 245 176-432 19-269 (275)
48 1ouv_A Conserved hypothetical 99.4 4.1E-10 1.4E-14 112.5 32.8 224 196-439 5-252 (273)
49 3u4t_A TPR repeat-containing p 99.4 2.6E-11 9E-16 120.9 24.1 58 238-296 78-135 (272)
50 1xnf_A Lipoprotein NLPI; TPR, 99.4 4.9E-12 1.7E-16 126.3 18.6 224 92-327 43-269 (275)
51 2q7f_A YRRB protein; TPR, prot 99.4 1.5E-11 5E-16 120.3 21.5 203 90-299 21-223 (243)
52 3u4t_A TPR repeat-containing p 99.4 5.9E-11 2E-15 118.3 24.8 231 132-368 8-250 (272)
53 2h6f_A Protein farnesyltransfe 99.4 9.6E-11 3.3E-15 122.6 27.1 230 92-330 97-344 (382)
54 2q7f_A YRRB protein; TPR, prot 99.4 2.2E-11 7.6E-16 119.0 21.0 94 307-402 128-221 (243)
55 2h6f_A Protein farnesyltransfe 99.4 9.5E-11 3.2E-15 122.7 27.0 248 127-385 97-364 (382)
56 3e4b_A ALGK; tetratricopeptide 99.4 6E-11 2E-15 127.9 23.5 342 67-440 9-389 (452)
57 4e6h_A MRNA 3'-END-processing 99.3 1.1E-08 3.6E-13 114.4 40.8 416 28-453 65-583 (679)
58 3sf4_A G-protein-signaling mod 99.3 5.5E-11 1.9E-15 125.9 19.6 304 90-425 7-363 (406)
59 3sf4_A G-protein-signaling mod 99.3 8.1E-11 2.8E-15 124.6 19.8 282 124-438 6-336 (406)
60 3vtx_A MAMA; tetratricopeptide 99.3 6.2E-10 2.1E-14 103.7 23.2 165 234-402 5-169 (184)
61 4a1s_A PINS, partner of inscut 99.3 1.1E-10 3.9E-15 124.0 20.4 277 129-438 50-372 (411)
62 2ond_A Cleavage stimulation fa 99.3 5.2E-09 1.8E-13 106.5 31.7 217 109-332 33-269 (308)
63 4a1s_A PINS, partner of inscut 99.3 6.7E-11 2.3E-15 125.9 17.7 277 94-402 50-371 (411)
64 3ro2_A PINS homolog, G-protein 99.3 9.9E-11 3.4E-15 120.1 18.4 62 376-437 265-331 (338)
65 2ond_A Cleavage stimulation fa 99.3 3.9E-09 1.3E-13 107.5 29.6 164 236-402 101-269 (308)
66 3ro2_A PINS homolog, G-protein 99.3 2.2E-10 7.7E-15 117.4 19.6 276 95-402 8-331 (338)
67 3vtx_A MAMA; tetratricopeptide 99.2 1.7E-09 5.7E-14 100.8 23.5 171 268-445 4-175 (184)
68 3ulq_A Response regulator aspa 99.2 6.3E-10 2.2E-14 117.2 22.2 163 168-330 109-290 (383)
69 3ulq_A Response regulator aspa 99.2 8.9E-10 3E-14 116.1 22.8 232 203-437 109-367 (383)
70 4abn_A Tetratricopeptide repea 99.2 5E-10 1.7E-14 121.5 20.1 215 108-331 84-319 (474)
71 3nf1_A KLC 1, kinesin light ch 99.2 6.2E-11 2.1E-15 120.5 12.3 176 92-297 27-223 (311)
72 4e6h_A MRNA 3'-END-processing 99.2 1.4E-07 4.6E-12 105.5 40.1 393 41-439 48-534 (679)
73 3nf1_A KLC 1, kinesin light ch 99.2 6.8E-11 2.3E-15 120.2 11.5 169 164-332 29-223 (311)
74 4abn_A Tetratricopeptide repea 99.2 1E-09 3.5E-14 119.0 21.4 217 142-366 83-319 (474)
75 1hz4_A MALT regulatory protein 99.1 2.8E-08 9.7E-13 104.0 29.4 232 99-330 21-279 (373)
76 1hz4_A MALT regulatory protein 99.1 3E-08 1E-12 103.8 28.7 265 172-437 24-321 (373)
77 3as5_A MAMA; tetratricopeptide 99.1 1E-08 3.5E-13 94.8 21.1 58 341-399 112-169 (186)
78 3q15_A PSP28, response regulat 99.1 3.4E-08 1.1E-12 103.7 26.8 229 204-437 108-364 (378)
79 3q15_A PSP28, response regulat 99.1 1.8E-08 6E-13 105.9 23.8 231 168-402 107-364 (378)
80 3as5_A MAMA; tetratricopeptide 99.1 2.3E-08 7.8E-13 92.4 22.1 163 199-367 10-172 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.0 2E-08 7E-13 113.5 22.4 165 234-402 9-173 (723)
82 4gyw_A UDP-N-acetylglucosamine 99.0 1.9E-08 6.6E-13 113.7 20.6 165 268-437 8-173 (723)
83 4i17_A Hypothetical protein; T 99.0 7.9E-08 2.7E-12 92.8 21.8 190 236-437 9-208 (228)
84 4i17_A Hypothetical protein; T 98.9 1E-07 3.4E-12 92.1 22.1 195 90-298 5-209 (228)
85 3edt_B KLC 2, kinesin light ch 98.9 1.1E-08 3.9E-13 101.8 14.9 158 139-296 13-196 (283)
86 3edt_B KLC 2, kinesin light ch 98.9 1.2E-08 3.9E-13 101.7 14.3 132 93-224 44-196 (283)
87 2fo7_A Synthetic consensus TPR 98.8 1.9E-07 6.4E-12 80.9 17.7 128 272-402 4-131 (136)
88 1qqe_A Vesicular transport pro 98.8 1.6E-07 5.6E-12 94.6 17.9 62 341-402 160-227 (292)
89 2fo7_A Synthetic consensus TPR 98.8 3.3E-07 1.1E-11 79.3 17.5 125 167-296 6-130 (136)
90 3mv2_B Coatomer subunit epsilo 98.8 6.9E-07 2.4E-11 88.7 20.9 247 30-299 18-283 (310)
91 3mv2_B Coatomer subunit epsilo 98.7 2.7E-06 9.3E-11 84.5 24.5 183 216-409 85-286 (310)
92 2uy1_A Cleavage stimulation fa 98.7 1.2E-05 4.1E-10 87.0 31.9 102 38-156 7-118 (493)
93 1qqe_A Vesicular transport pro 98.7 2.6E-07 8.9E-12 93.1 17.5 98 340-437 118-227 (292)
94 3qky_A Outer membrane assembly 98.7 6.7E-07 2.3E-11 88.2 19.5 99 126-225 14-125 (261)
95 3dra_A Protein farnesyltransfe 98.7 5.2E-06 1.8E-10 83.2 24.7 225 33-262 40-286 (306)
96 3urz_A Uncharacterized protein 98.7 8.4E-07 2.9E-11 84.2 18.2 73 310-384 60-132 (208)
97 3qky_A Outer membrane assembly 98.7 9.2E-07 3.1E-11 87.2 19.0 102 89-191 12-126 (261)
98 3urz_A Uncharacterized protein 98.7 6E-07 2.1E-11 85.3 16.9 191 28-243 7-199 (208)
99 2r5s_A Uncharacterized protein 98.7 3.6E-07 1.2E-11 84.2 14.8 160 27-189 8-171 (176)
100 2pzi_A Probable serine/threoni 98.6 5.3E-07 1.8E-11 102.2 18.4 170 36-212 402-583 (681)
101 3rjv_A Putative SEL1 repeat pr 98.6 4.2E-06 1.4E-10 79.6 21.3 173 111-299 5-198 (212)
102 3qou_A Protein YBBN; thioredox 98.6 1E-06 3.6E-11 88.3 17.4 161 59-222 115-280 (287)
103 3rjv_A Putative SEL1 repeat pr 98.5 6.5E-06 2.2E-10 78.3 20.3 176 145-334 4-198 (212)
104 2pzi_A Probable serine/threoni 98.5 6.5E-07 2.2E-11 101.5 15.5 155 208-366 402-561 (681)
105 2yhc_A BAMD, UPF0169 lipoprote 98.5 8.3E-06 2.8E-10 78.3 20.8 204 92-334 4-214 (225)
106 3qou_A Protein YBBN; thioredox 98.5 2.1E-06 7.2E-11 86.1 17.2 166 125-296 115-282 (287)
107 3dra_A Protein farnesyltransfe 98.5 5.6E-05 1.9E-09 75.7 27.3 115 108-225 49-174 (306)
108 2r5s_A Uncharacterized protein 98.5 1.1E-06 3.7E-11 80.9 13.8 160 238-401 10-171 (176)
109 2yhc_A BAMD, UPF0169 lipoprote 98.5 8.3E-06 2.8E-10 78.3 20.5 205 127-369 4-214 (225)
110 2vsy_A XCC0866; transferase, g 98.5 2.9E-06 9.8E-11 94.2 18.8 153 210-368 2-157 (568)
111 4ga2_A E3 SUMO-protein ligase 98.5 1.1E-06 3.9E-11 78.4 12.5 142 67-211 3-148 (150)
112 2ifu_A Gamma-SNAP; membrane fu 98.5 2.9E-06 9.9E-11 86.0 16.7 155 271-430 78-253 (307)
113 2ifu_A Gamma-SNAP; membrane fu 98.5 2.5E-06 8.5E-11 86.5 16.2 230 37-291 3-254 (307)
114 4ga2_A E3 SUMO-protein ligase 98.4 1.3E-06 4.3E-11 78.1 11.3 110 209-324 9-119 (150)
115 2vsy_A XCC0866; transferase, g 98.4 4.8E-06 1.6E-10 92.4 18.4 154 175-334 2-158 (568)
116 2uy1_A Cleavage stimulation fa 98.4 0.00027 9.3E-09 76.3 31.2 354 37-437 26-412 (493)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.8E-05 6.3E-10 74.8 19.4 127 65-192 10-151 (213)
118 1na0_A Designed protein CTPR3; 98.3 2.6E-05 8.9E-10 66.0 16.0 98 92-191 9-106 (125)
119 3u3w_A Transcriptional activat 98.3 8.5E-05 2.9E-09 74.4 22.1 60 341-400 198-263 (293)
120 3q7a_A Farnesyltransferase alp 98.3 0.00049 1.7E-08 69.7 27.0 182 95-283 57-256 (349)
121 3u3w_A Transcriptional activat 98.3 0.00011 3.9E-09 73.5 22.6 128 310-437 121-265 (293)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.3 6.3E-05 2.2E-09 71.0 19.5 125 202-333 11-150 (213)
123 1a17_A Serine/threonine protei 98.2 3.4E-05 1.1E-09 69.4 16.5 93 272-366 16-108 (166)
124 1a17_A Serine/threonine protei 98.2 5.5E-05 1.9E-09 68.0 17.3 128 236-366 15-144 (166)
125 3q7a_A Farnesyltransferase alp 98.2 0.00089 3E-08 67.8 27.6 174 139-319 66-257 (349)
126 1na0_A Designed protein CTPR3; 98.2 6E-05 2E-09 63.7 16.5 25 271-295 45-69 (125)
127 2qfc_A PLCR protein; TPR, HTH, 98.2 0.0001 3.5E-09 73.8 20.7 167 271-437 77-265 (293)
128 2qfc_A PLCR protein; TPR, HTH, 98.2 0.00019 6.5E-09 71.8 22.1 166 236-401 77-264 (293)
129 3gw4_A Uncharacterized protein 98.2 1.8E-05 6.1E-10 74.1 13.2 24 413-436 151-174 (203)
130 4f3v_A ESX-1 secretion system 98.2 9.6E-05 3.3E-09 72.3 18.5 188 104-299 18-238 (282)
131 4gco_A Protein STI-1; structur 98.2 6.9E-05 2.3E-09 64.4 15.5 97 93-191 14-110 (126)
132 2vyi_A SGTA protein; chaperone 98.1 6.2E-05 2.1E-09 64.2 15.1 118 92-212 12-129 (131)
133 2c2l_A CHIP, carboxy terminus 98.1 7.6E-06 2.6E-10 81.7 10.3 98 91-190 3-100 (281)
134 3gyz_A Chaperone protein IPGC; 98.1 1.3E-05 4.4E-10 71.4 10.7 99 91-191 35-133 (151)
135 3dss_A Geranylgeranyl transfer 98.1 0.00086 3E-08 67.5 25.3 184 37-225 41-266 (331)
136 4gco_A Protein STI-1; structur 98.1 8E-05 2.7E-09 63.9 15.5 93 238-332 17-109 (126)
137 2lni_A Stress-induced-phosphop 98.1 7.1E-05 2.4E-09 64.3 15.3 97 234-332 16-112 (133)
138 4f3v_A ESX-1 secretion system 98.1 6.3E-05 2.2E-09 73.6 16.1 190 139-334 18-238 (282)
139 2c2l_A CHIP, carboxy terminus 98.1 8.8E-06 3E-10 81.2 10.2 94 236-331 6-99 (281)
140 2vyi_A SGTA protein; chaperone 98.1 7.8E-05 2.7E-09 63.6 15.1 25 341-365 82-106 (131)
141 2lni_A Stress-induced-phosphop 98.1 5.3E-05 1.8E-09 65.1 13.9 99 91-191 15-113 (133)
142 2e2e_A Formate-dependent nitri 98.1 5.5E-05 1.9E-09 69.2 14.4 119 316-438 22-144 (177)
143 3gyz_A Chaperone protein IPGC; 98.1 2.8E-05 9.7E-10 69.2 11.9 94 341-437 38-132 (151)
144 3gw4_A Uncharacterized protein 98.1 2E-05 6.8E-10 73.8 11.6 98 92-189 26-134 (203)
145 2e2e_A Formate-dependent nitri 98.1 4E-05 1.4E-09 70.2 12.7 118 105-225 23-143 (177)
146 1p5q_A FKBP52, FK506-binding p 98.0 0.00013 4.5E-09 74.7 16.9 87 270-358 197-283 (336)
147 1p5q_A FKBP52, FK506-binding p 98.0 0.00013 4.4E-09 74.8 16.4 145 269-437 147-293 (336)
148 1elw_A TPR1-domain of HOP; HOP 98.0 0.00033 1.1E-08 58.3 16.3 97 93-191 5-101 (118)
149 2vgx_A Chaperone SYCD; alterna 98.0 5.5E-05 1.9E-09 67.1 11.3 98 338-438 20-118 (148)
150 2vgx_A Chaperone SYCD; alterna 97.9 4.1E-05 1.4E-09 68.0 10.3 20 380-399 95-114 (148)
151 1elw_A TPR1-domain of HOP; HOP 97.9 0.00042 1.4E-08 57.6 16.0 24 342-365 75-98 (118)
152 3dss_A Geranylgeranyl transfer 97.9 0.006 2E-07 61.4 26.8 181 250-437 90-303 (331)
153 3upv_A Heat shock protein STI1 97.9 0.00024 8.3E-09 60.6 14.5 87 313-401 13-99 (126)
154 3upv_A Heat shock protein STI1 97.9 0.00026 9E-09 60.3 14.6 97 93-191 5-101 (126)
155 4gcn_A Protein STI-1; structur 97.9 0.00015 5.1E-09 62.3 12.4 105 340-447 9-119 (127)
156 4gcn_A Protein STI-1; structur 97.9 0.00028 9.7E-09 60.5 13.9 103 94-199 10-118 (127)
157 4b4t_Q 26S proteasome regulato 97.8 0.00017 5.8E-09 76.5 14.7 147 26-188 5-161 (434)
158 1elr_A TPR2A-domain of HOP; HO 97.8 0.00021 7.2E-09 60.8 12.5 108 93-203 5-118 (131)
159 3q49_B STIP1 homology and U bo 97.8 0.00048 1.6E-08 59.5 14.8 98 90-189 7-104 (137)
160 2kck_A TPR repeat; tetratricop 97.8 0.0002 6.7E-09 59.1 11.8 94 130-225 9-105 (112)
161 2xcb_A PCRH, regulatory protei 97.8 0.00023 8E-09 62.3 12.4 95 94-190 20-114 (142)
162 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00055 1.9E-08 61.5 15.2 98 234-333 11-108 (164)
163 1elr_A TPR2A-domain of HOP; HO 97.8 0.00028 9.6E-09 60.1 12.4 58 272-330 7-64 (131)
164 2kck_A TPR repeat; tetratricop 97.8 0.00029 1E-08 58.0 12.0 98 92-191 6-106 (112)
165 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00071 2.4E-08 60.8 15.5 98 338-438 10-108 (164)
166 2fbn_A 70 kDa peptidylprolyl i 97.8 0.00049 1.7E-08 64.1 14.8 27 271-297 40-66 (198)
167 2dba_A Smooth muscle cell asso 97.7 0.00096 3.3E-08 58.2 15.9 95 198-297 29-127 (148)
168 2dba_A Smooth muscle cell asso 97.7 0.0011 3.8E-08 57.8 16.3 99 90-191 26-128 (148)
169 3q49_B STIP1 homology and U bo 97.7 0.00068 2.3E-08 58.5 14.7 93 236-330 11-103 (137)
170 2xcb_A PCRH, regulatory protei 97.7 0.00042 1.4E-08 60.7 13.3 90 240-331 24-113 (142)
171 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00048 1.7E-08 64.2 14.6 88 270-359 89-176 (198)
172 4b4t_Q 26S proteasome regulato 97.7 0.0016 5.4E-08 68.9 19.1 165 200-365 58-242 (434)
173 1hxi_A PEX5, peroxisome target 97.6 0.00058 2E-08 57.9 12.0 93 97-191 22-114 (121)
174 1hxi_A PEX5, peroxisome target 97.6 0.00073 2.5E-08 57.3 11.7 90 240-331 23-112 (121)
175 3ro3_A PINS homolog, G-protein 97.5 0.00058 2E-08 60.5 11.0 97 341-437 51-157 (164)
176 3ro3_A PINS homolog, G-protein 97.5 0.00064 2.2E-08 60.2 11.1 60 237-296 12-76 (164)
177 1wao_1 Serine/threonine protei 97.5 0.00081 2.8E-08 72.4 13.3 117 244-363 16-134 (477)
178 2xev_A YBGF; tetratricopeptide 97.4 0.0045 1.5E-07 52.5 15.2 62 236-298 41-105 (129)
179 2xev_A YBGF; tetratricopeptide 97.4 0.0036 1.2E-07 53.1 14.3 91 99-191 9-105 (129)
180 1wao_1 Serine/threonine protei 97.4 0.00047 1.6E-08 74.2 10.2 121 275-398 12-134 (477)
181 3rkv_A Putative peptidylprolyl 97.4 0.0019 6.4E-08 57.8 12.6 61 375-437 64-125 (162)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0024 8.1E-08 68.3 15.5 123 92-216 268-404 (457)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0024 8.1E-08 68.3 15.4 88 305-394 318-405 (457)
184 3k9i_A BH0479 protein; putativ 97.3 0.0003 1E-08 59.2 6.3 84 106-190 4-89 (117)
185 1ihg_A Cyclophilin 40; ppiase 97.3 0.0023 7.9E-08 66.2 14.1 119 237-357 226-359 (370)
186 3rkv_A Putative peptidylprolyl 97.3 0.0029 1E-07 56.5 12.8 98 93-191 12-126 (162)
187 1ihg_A Cyclophilin 40; ppiase 97.3 0.0025 8.7E-08 65.9 13.8 137 94-254 225-361 (370)
188 3k9i_A BH0479 protein; putativ 97.3 0.00056 1.9E-08 57.5 7.3 60 236-296 29-88 (117)
189 1dce_A Protein (RAB geranylger 97.1 0.015 5.1E-07 63.7 18.7 131 40-174 44-190 (567)
190 1klx_A Cysteine rich protein B 97.1 0.0058 2E-07 53.0 12.3 110 284-404 10-127 (138)
191 1dce_A Protein (RAB geranylger 97.1 0.041 1.4E-06 60.2 21.8 172 106-284 43-241 (567)
192 2if4_A ATFKBP42; FKBP-like, al 97.1 0.002 6.7E-08 65.9 10.6 147 93-263 180-328 (338)
193 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0016 5.3E-08 66.6 9.5 146 270-437 180-327 (338)
194 2hr2_A Hypothetical protein; a 97.0 0.01 3.6E-07 52.2 12.6 94 96-189 15-129 (159)
195 1klx_A Cysteine rich protein B 97.0 0.021 7.2E-07 49.4 14.7 106 108-224 11-124 (138)
196 2hr2_A Hypothetical protein; a 96.9 0.012 4.2E-07 51.8 12.7 27 271-297 59-85 (159)
197 2l6j_A TPR repeat-containing p 96.9 0.00091 3.1E-08 55.1 4.7 62 94-156 6-67 (111)
198 3n71_A Histone lysine methyltr 96.8 0.0057 2E-07 65.4 11.6 89 172-260 319-419 (490)
199 3n71_A Histone lysine methyltr 96.8 0.0057 2E-07 65.4 11.1 86 245-330 320-419 (490)
200 2l6j_A TPR repeat-containing p 96.8 0.0017 5.7E-08 53.4 5.6 56 310-366 10-65 (111)
201 1na3_A Designed protein CTPR2; 96.7 0.018 6.1E-07 45.0 11.3 62 236-298 11-72 (91)
202 1na3_A Designed protein CTPR2; 96.7 0.016 5.5E-07 45.2 10.9 62 94-156 11-72 (91)
203 2kat_A Uncharacterized protein 96.6 0.01 3.5E-07 49.2 9.6 62 234-296 19-80 (115)
204 2kat_A Uncharacterized protein 96.6 0.013 4.4E-07 48.6 10.2 77 111-189 4-80 (115)
205 1zu2_A Mitochondrial import re 96.5 0.0057 2E-07 53.8 7.1 28 424-453 106-133 (158)
206 1zu2_A Mitochondrial import re 96.4 0.011 3.8E-07 52.0 8.2 60 143-205 62-132 (158)
207 3ly7_A Transcriptional activat 96.3 0.14 4.9E-06 51.7 16.8 74 124-201 274-347 (372)
208 3ma5_A Tetratricopeptide repea 96.1 0.027 9.1E-07 45.4 9.0 62 234-296 7-68 (100)
209 3ma5_A Tetratricopeptide repea 96.0 0.036 1.2E-06 44.6 9.3 61 92-153 7-67 (100)
210 3ly7_A Transcriptional activat 95.8 0.13 4.3E-06 52.0 13.8 64 372-437 275-338 (372)
211 3mkq_A Coatomer beta'-subunit; 95.6 0.32 1.1E-05 55.7 18.7 129 131-294 633-761 (814)
212 3mkq_A Coatomer beta'-subunit; 95.5 0.26 8.8E-06 56.5 17.5 47 137-189 662-708 (814)
213 1pc2_A Mitochondria fission pr 94.9 0.33 1.1E-05 42.1 11.7 96 354-453 13-113 (152)
214 3qwp_A SET and MYND domain-con 94.8 0.14 4.7E-06 53.8 11.0 61 376-436 331-398 (429)
215 3qwp_A SET and MYND domain-con 94.7 0.26 8.8E-06 51.7 13.0 60 271-330 331-397 (429)
216 3qww_A SET and MYND domain-con 94.7 0.076 2.6E-06 55.7 8.7 85 317-401 311-409 (433)
217 3fau_A NEDD4-binding protein 2 94.6 0.08 2.7E-06 40.8 6.5 77 578-665 2-79 (82)
218 3qww_A SET and MYND domain-con 94.5 0.12 4.1E-06 54.2 9.6 60 236-295 342-408 (433)
219 2kc7_A BFR218_protein; tetratr 94.5 0.13 4.4E-06 40.8 7.9 54 137-191 10-64 (99)
220 2kc7_A BFR218_protein; tetratr 94.4 0.25 8.6E-06 39.0 9.5 55 243-298 9-64 (99)
221 3mkq_B Coatomer subunit alpha; 93.9 1.4 4.7E-05 39.2 13.8 45 173-223 16-60 (177)
222 1wy6_A Hypothetical protein ST 93.9 2.5 8.5E-05 35.4 15.5 138 174-335 19-156 (172)
223 1pc2_A Mitochondria fission pr 93.2 0.83 2.8E-05 39.6 10.9 86 320-409 14-104 (152)
224 3bee_A Putative YFRE protein; 93.2 0.75 2.6E-05 36.2 9.9 64 234-298 6-72 (93)
225 3mkq_B Coatomer subunit alpha; 93.0 4.7 0.00016 35.8 16.6 46 244-295 15-60 (177)
226 3bee_A Putative YFRE protein; 92.6 1.5 5.1E-05 34.4 10.9 66 125-191 4-72 (93)
227 1wy6_A Hypothetical protein ST 92.2 4.5 0.00016 33.9 14.6 63 306-369 93-155 (172)
228 2v5f_A Prolyl 4-hydroxylase su 91.9 1.3 4.3E-05 35.6 10.0 63 340-402 6-74 (104)
229 2v5f_A Prolyl 4-hydroxylase su 91.5 1.7 5.7E-05 34.9 10.4 62 129-190 7-74 (104)
230 4b4t_P 26S proteasome regulato 91.2 9.6 0.00033 39.8 18.4 164 201-364 141-320 (445)
231 2d9i_A NEDD4-binding protein 2 91.1 1 3.5E-05 35.7 8.3 79 576-665 8-87 (96)
232 3u64_A Protein TP_0956; tetrat 90.0 2.2 7.4E-05 41.3 10.9 93 108-202 179-282 (301)
233 3u64_A Protein TP_0956; tetrat 89.3 16 0.00056 35.3 21.4 94 250-343 179-281 (301)
234 4h7y_A Dual specificity protei 88.6 3.8 0.00013 35.1 10.0 106 88-195 9-127 (161)
235 4h7y_A Dual specificity protei 87.8 3 0.0001 35.7 9.0 51 318-369 74-124 (161)
236 1nzn_A CGI-135 protein, fissio 87.7 3.6 0.00012 34.2 9.3 90 353-446 15-109 (126)
237 1nzn_A CGI-135 protein, fissio 87.4 6.5 0.00022 32.7 10.7 87 319-409 16-107 (126)
238 4b4t_P 26S proteasome regulato 86.2 34 0.0012 35.5 18.7 149 308-456 141-305 (445)
239 2vkc_A NEDD4-binding protein 2 85.3 1.5 5.3E-05 37.2 6.1 79 577-665 54-132 (135)
240 1v54_E Cytochrome C oxidase po 83.2 7.5 0.00025 30.6 8.4 66 389-455 25-90 (109)
241 4gns_B Protein CSD3, chitin bi 81.8 5.4 0.00018 44.5 10.2 51 349-400 347-397 (754)
242 2ff4_A Probable regulatory pro 81.3 6.4 0.00022 40.3 10.1 71 271-342 173-248 (388)
243 4gns_B Protein CSD3, chitin bi 81.0 17 0.00057 40.6 13.8 54 312-366 345-398 (754)
244 2ff4_A Probable regulatory pro 80.6 7 0.00024 40.0 10.1 72 129-201 173-249 (388)
245 4fhn_B Nucleoporin NUP120; pro 80.5 39 0.0013 40.0 17.9 88 128-217 900-991 (1139)
246 1v54_E Cytochrome C oxidase po 76.5 14 0.00048 29.1 8.0 47 286-332 27-73 (109)
247 2y69_E Cytochrome C oxidase su 76.1 15 0.0005 30.7 8.4 64 391-455 70-133 (152)
248 2uwj_G Type III export protein 75.9 22 0.00077 27.8 8.8 81 37-122 18-98 (115)
249 2p58_C Putative type III secre 75.3 24 0.00081 27.7 8.8 81 37-122 19-99 (116)
250 4fhn_B Nucleoporin NUP120; pro 72.5 63 0.0021 38.3 16.6 87 271-359 901-991 (1139)
251 2p58_C Putative type III secre 69.7 26 0.0009 27.5 7.9 86 319-413 22-107 (116)
252 2uwj_G Type III export protein 67.6 25 0.00085 27.6 7.4 86 319-413 21-106 (115)
253 2y69_E Cytochrome C oxidase su 66.6 28 0.00095 29.1 8.0 49 285-333 69-117 (152)
254 1zbp_A Hypothetical protein VP 65.7 59 0.002 30.9 11.4 53 32-86 4-56 (273)
255 3lvg_A Clathrin heavy chain 1; 61.0 0.0075 2.6E-07 62.2 -17.1 260 94-395 56-325 (624)
256 3ffl_A Anaphase-promoting comp 59.0 57 0.0019 28.4 9.2 61 236-296 22-90 (167)
257 3lpz_A GET4 (YOR164C homolog); 58.3 1.5E+02 0.005 29.3 21.5 131 28-185 15-159 (336)
258 3eiq_C Programmed cell death p 57.4 1.4E+02 0.0049 29.7 13.2 77 376-453 219-297 (358)
259 1k1a_A B-cell lymphoma 3-encod 56.6 22 0.00075 32.8 7.1 23 135-157 14-36 (241)
260 4b4t_R RPN7, 26S proteasome re 56.4 56 0.0019 33.7 10.7 13 317-329 221-233 (429)
261 3esl_A Checkpoint serine/threo 56.0 18 0.00062 32.7 5.7 64 24-87 75-141 (202)
262 1qsa_A Protein (soluble lytic 54.2 2.4E+02 0.0082 30.5 30.7 355 22-411 99-487 (618)
263 4b4t_R RPN7, 26S proteasome re 52.3 74 0.0025 32.7 10.8 17 386-402 220-236 (429)
264 3o48_A Mitochondria fission 1 50.3 1.1E+02 0.0038 25.5 12.4 79 371-453 37-120 (134)
265 3ffl_A Anaphase-promoting comp 50.2 1.1E+02 0.0036 26.7 9.4 57 99-155 27-91 (167)
266 3esl_A Checkpoint serine/threo 49.9 1.5E+02 0.005 26.8 11.7 55 106-160 93-148 (202)
267 3eiq_C Programmed cell death p 47.1 2.3E+02 0.0078 28.2 13.0 70 341-411 219-290 (358)
268 3o48_A Mitochondria fission 1 47.0 1.2E+02 0.0043 25.1 10.6 72 336-409 37-111 (134)
269 4a1g_A Mitotic checkpoint seri 46.6 17 0.00058 31.2 3.8 40 89-128 98-137 (152)
270 3lvg_A Clathrin heavy chain 1; 45.1 0.03 1E-06 57.8 -15.7 261 128-433 55-315 (624)
271 2zu6_B Programmed cell death p 44.4 1.8E+02 0.0062 28.2 11.4 75 377-452 169-245 (307)
272 1zbp_A Hypothetical protein VP 44.4 2.1E+02 0.0073 27.1 12.6 49 174-223 9-57 (273)
273 3lpz_A GET4 (YOR164C homolog); 43.6 2.5E+02 0.0085 27.6 21.6 67 129-210 37-107 (336)
274 2wpv_A GET4, UPF0363 protein Y 40.1 2.7E+02 0.0092 27.0 20.9 133 27-186 15-158 (312)
275 2r9g_A AAA ATPase, central reg 39.6 1.7E+02 0.0058 26.2 9.2 36 282-318 27-62 (204)
276 3txn_A 26S proteasome regulato 39.3 3.2E+02 0.011 27.6 20.9 231 236-466 21-279 (394)
277 2wvi_A Mitotic checkpoint seri 38.6 34 0.0012 29.8 4.5 39 90-128 94-132 (164)
278 4aez_C MAD3, mitotic spindle c 37.6 52 0.0018 30.2 5.8 59 25-85 116-174 (223)
279 2nsz_A Programmed cell death p 36.7 1.8E+02 0.0061 24.0 9.0 22 239-260 12-33 (129)
280 3ltj_A Alpharep-4; protein eng 36.7 2.2E+02 0.0074 25.0 20.7 112 89-212 25-136 (201)
281 1k1a_A B-cell lymphoma 3-encod 36.3 48 0.0017 30.3 5.8 86 99-188 13-102 (241)
282 3bge_A Predicted ATPase; struc 34.7 1.6E+02 0.0055 26.3 8.2 45 274-318 9-56 (201)
283 2d2s_A Exocyst complex compone 34.7 2.5E+02 0.0087 25.9 10.3 27 269-295 91-117 (235)
284 1y8m_A FIS1; mitochondria, unk 34.0 2.1E+02 0.0073 24.1 13.5 79 371-451 36-117 (144)
285 1y8m_A FIS1; mitochondria, unk 33.3 2.2E+02 0.0075 24.0 13.1 72 336-409 36-110 (144)
286 2wpv_A GET4, UPF0363 protein Y 32.7 3.5E+02 0.012 26.2 21.7 114 129-257 35-157 (312)
287 4ady_A RPN2, 26S proteasome re 32.6 6.1E+02 0.021 29.0 34.4 84 34-120 154-258 (963)
288 1qsa_A Protein (soluble lytic 32.3 5.1E+02 0.017 27.9 38.1 84 58-143 69-152 (618)
289 2zu6_B Programmed cell death p 32.0 77 0.0026 30.9 6.4 67 237-304 169-237 (307)
290 2ion_A PDCD4, programmed cell 31.9 1.5E+02 0.0053 25.2 7.7 23 238-260 13-35 (152)
291 1wdy_A 2-5A-dependent ribonucl 31.3 63 0.0022 30.3 5.9 23 386-408 191-213 (285)
292 3ctd_A Putative ATPase, AAA fa 31.3 2.1E+02 0.0073 25.8 8.5 45 274-318 37-84 (213)
293 2d2s_A Exocyst complex compone 31.1 2.5E+02 0.0086 25.9 9.6 88 99-189 25-118 (235)
294 3ltm_A Alpha-REP4; protein eng 30.3 2.8E+02 0.0097 24.4 20.3 80 125-212 62-141 (211)
295 4a1g_A Mitotic checkpoint seri 30.2 2.6E+02 0.0088 23.9 10.7 50 111-160 84-134 (152)
296 2ion_A PDCD4, programmed cell 30.1 2.3E+02 0.0079 24.1 8.5 74 376-450 11-86 (152)
297 4ady_A RPN2, 26S proteasome re 30.1 6.7E+02 0.023 28.6 31.9 153 244-402 500-657 (963)
298 1wdy_A 2-5A-dependent ribonucl 30.0 31 0.0011 32.6 3.3 9 100-108 10-18 (285)
299 2nsz_A Programmed cell death p 29.0 2.4E+02 0.0082 23.1 9.9 73 377-450 10-84 (129)
300 3ygs_P Procaspase 9; apoptosis 27.4 1E+02 0.0034 24.0 5.3 62 46-112 25-88 (97)
301 2p1h_A APAF-1, apoptotic prote 27.2 2.1E+02 0.0071 21.8 7.3 63 44-111 24-86 (94)
302 4g8k_A 2-5A-dependent ribonucl 25.6 1.2E+02 0.0042 29.4 7.0 105 325-444 220-329 (337)
303 3eu9_A Huntingtin-interacting 24.9 28 0.00097 31.9 1.9 221 204-441 13-239 (240)
304 3hra_A Ankyrin repeat family p 24.7 51 0.0017 29.2 3.6 15 207-221 79-93 (201)
305 2wvi_A Mitotic checkpoint seri 24.2 3.5E+02 0.012 23.4 11.3 51 111-161 79-130 (164)
306 4b4t_S RPN3, 26S proteasome re 22.9 1.5E+02 0.0052 31.2 7.0 18 35-52 146-163 (523)
307 1n11_A Ankyrin; clathrin, BAND 22.5 55 0.0019 33.6 3.7 17 170-186 118-134 (437)
308 2pk8_A Uncharacterized protein 22.1 1.3E+02 0.0045 23.0 4.5 35 582-616 7-41 (103)
309 2fe3_A Peroxide operon regulat 20.8 3.3E+02 0.011 22.7 7.8 39 136-174 30-68 (145)
310 3aji_A 26S proteasome non-ATPa 20.4 1.1E+02 0.0037 27.6 5.0 15 244-258 13-27 (231)
311 3ltm_A Alpha-REP4; protein eng 20.1 4.4E+02 0.015 23.0 19.6 113 124-250 30-142 (211)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-34 Score=322.98 Aligned_cols=416 Identities=8% Similarity=-0.044 Sum_probs=354.5
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC--CCCCHHHHHHHHH
Q 005127 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMS 100 (713)
Q Consensus 27 ~~~~~~~~L~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~ 100 (713)
++...|+.++ +.|++++|+.+|++|.... |+. .....++..+...|++++|+.+|+.+ .+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4566666555 7999999999999998755 544 44456888899999999999999988 4789999999999
Q ss_pred HHHhCCChHHHHHHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 005127 101 VCASSKDSEGAFQVLRLVQ-EA--------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~-~~--------------g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (713)
+|.+.|++++|..+|+++. .. |.+++..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 9999999999999998532 11 23346889999999999999999999999999987522 34443
Q ss_pred HH--------------------------------------HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 166 GA--------------------------------------LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (713)
Q Consensus 166 ~~--------------------------------------li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 207 (713)
.. ++.+|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 33 355667889999999999999865 57999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
.+.|++++|.++|+++.... +.+..+++.++.+|.+.|++++|..+|+.+.+.. +.+..+|+.++.+|.+.|++++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 99999999999999998642 3467789999999999999999999999998665 6678999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005127 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 288 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
|.++|+++.+.... +..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999886443 68899999999999999999999999998875 45788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005127 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (713)
Q Consensus 368 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 441 (713)
.. +.+..+|+.++..|.+.|++++|+++|++|.+. +..|+ ..+|..+..+|.+.|++++|..+|+++.+.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 54 457899999999999999999999999999875 67887 7899999999999999999999999998854 3
Q ss_pred CCHHHHHHHHHHHHh
Q 005127 442 PNLVMFKCIIGMCSR 456 (713)
Q Consensus 442 p~~~~~~~li~~~~r 456 (713)
.+..+|..+..+|.+
T Consensus 548 ~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 548 NDANVHTAIALVYLH 562 (597)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 477888888887654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-32 Score=307.52 Aligned_cols=403 Identities=10% Similarity=0.012 Sum_probs=350.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCC-------------------CH
Q 005127 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-------------------TL 92 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~ 92 (713)
...+.+.|++++|+.+|+.+... +.+......++..+.+.|++++|+++|+++.+. +.
T Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 124 AQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhH
Confidence 34455899999999999988643 455667777889999999999999999964433 48
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH--------------------------------------HH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT--------------------------------------LI 134 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~--------------------------------------li 134 (713)
.+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+.. ++
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 899999999999999999999999999875 223333333 35
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (713)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 214 (713)
..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..+|+.++.+|.+.|+++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHH
Confidence 5667889999999999999866 5899999999999999999999999999999775 447888999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (713)
Q Consensus 215 ~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (713)
+|.++|+++... .+.+..+++.++.+|.+.|++++|.++|+.+.+.+ +.+..+|+.++.+|.+.|++++|+++|++
T Consensus 357 ~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 357 KLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999853 35578899999999999999999999999998865 55788999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 005127 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL 370 (713)
Q Consensus 295 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~ 370 (713)
+.+.+.. +..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +.
T Consensus 433 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 9987643 78899999999999999999999999998875 457899999999999999999999999999875 66
Q ss_pred CCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 005127 371 KPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMF 447 (713)
Q Consensus 371 ~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~ 447 (713)
.|+ ..+|+.++.+|.+.|++++|++.|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+. .|+ ...+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~ 587 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMAS 587 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHH
Confidence 787 7899999999999999999999999998864 348899999999999999999999999999984 454 3344
Q ss_pred HHH
Q 005127 448 KCI 450 (713)
Q Consensus 448 ~~l 450 (713)
..+
T Consensus 588 ~~l 590 (597)
T 2xpi_A 588 DLL 590 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.1e-30 Score=279.47 Aligned_cols=203 Identities=16% Similarity=0.247 Sum_probs=131.7
Q ss_pred HHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 005127 253 AREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VEA 322 (713)
Q Consensus 253 A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~---------~~~ 322 (713)
+..+.+.+.+.+....+. +++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 334444555555444433 4566666666666666666666666666666666666666666665443 566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 323 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.+++.+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777776654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.2e-29 Score=275.68 Aligned_cols=188 Identities=18% Similarity=0.279 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHH
Q 005127 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---------WEFACSVYDDMTKKGVIPDEV 305 (713)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~l~~~m~~~g~~p~~~ 305 (713)
..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. .++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34666777777777777777777777777777777777777777766544 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005127 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 385 (713)
||+++|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (713)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (713)
+.|+.++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999888764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=5.3e-25 Score=234.06 Aligned_cols=376 Identities=13% Similarity=0.049 Sum_probs=277.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhCCChH
Q 005127 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (713)
Q Consensus 33 ~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~ 109 (713)
..+.+.|++++|++.++++.+.. |.+...+..+...+...|++++|..+++.. .+.+..+|..+..++.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 45678899999999999988876 677777777777788888888888887653 3557778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
+|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...|...|++++|...|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888887753 3456678888888888888888888888887764 2245566777777888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 005127 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (713)
Q Consensus 190 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 269 (713)
+.. +.+..+|+.+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|...|+...+.. +.+.
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 653 3356778888888888888888888888877531 2345567777777888888888888887777654 4456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
.++..+...|.+.|++++|...|+++.+.... +..++..+..++.+.|++++|...++.+.+.. +.+..+++.+...|
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 77778888888888888888888887776443 45677777777777888888888887777653 45677777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 005127 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERK 422 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 422 (713)
.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|++.|+++.+ +.|+ ...|..+...+...
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHc
Confidence 77888888888777776542 33466777777777777888888877777776 3453 44455554444443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.2e-23 Score=223.74 Aligned_cols=363 Identities=13% Similarity=0.079 Sum_probs=316.5
Q ss_pred HHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005127 68 FNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (713)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 144 (713)
...+.+.|++++|++.|..+ .+.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 34456788999999998865 34566778888888999999999999999988764 668889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005127 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (713)
+|.+.|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|.++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999998864 3356789999999999999999999999998763 3345667788889999999999999999998
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005127 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (713)
Q Consensus 225 ~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 304 (713)
.. .+.+..+|..+...|.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++....... +.
T Consensus 163 ~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 163 ET---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred Hh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 64 13357789999999999999999999999999876 567889999999999999999999999999887543 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (713)
Q Consensus 305 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 384 (713)
.++..+..+|...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|+.+...|
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 889999999999999999999999999875 4467889999999999999999999999998763 56789999999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005127 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (713)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 443 (713)
.+.|++++|++.|+++.+. .+.+..++..+..++.+.|++++|...|+++.+ +.|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 9999999999999999874 233678899999999999999999999999987 4454
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=4.7e-20 Score=199.78 Aligned_cols=267 Identities=12% Similarity=0.062 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H---HHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-V---HTYG 166 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~---~~~~ 166 (713)
+..+|..+..++...|++++|...|+.+.+.+ +.+..++..+..+|.+.|++++|.+.|+++.+.. |+ . .++.
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~ 135 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQS 135 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHH
Confidence 45555555555555566666666665555543 3345555555566666666666666666555442 22 2 3333
Q ss_pred HHHH------------HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH
Q 005127 167 ALID------------GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (713)
Q Consensus 167 ~li~------------~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~ 234 (713)
.++. .+.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|.+.|.++... .+.+.
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 211 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL---KNDNT 211 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH---HCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCH
Confidence 3322 2455555555555555555432 234455555555555555555555555555432 12234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005127 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA------------INCCSQTGDWEFACSVYDDMTKKGVIP 302 (713)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p 302 (713)
.++..+..+|...|++++|...|+.+.+.. +.+...+..+ ...|.+.|++++|...|+++......
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~- 289 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS- 289 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 455555555555555555555555554432 2233333332 44555555555555555555443211
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005127 303 D----EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 303 ~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
+ ...+..+..++.+.|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 2244444555555555555555555544432 22345555555555555555555555555544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=6.6e-20 Score=198.62 Aligned_cols=316 Identities=12% Similarity=0.037 Sum_probs=252.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (713)
+.+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..+|...|++++|.+.|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3466788999999999999999999999999864 5578899999999999999999999999999875 3468899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHH------------HHHhcCCHHHHHHHHHHhhhCCCCCCCC
Q 005127 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNALIT------------ACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (713)
Q Consensus 169 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~~~~~~pd 233 (713)
..+|.+.|++++|...|+++.... +.+. ..+..++. .+.+.|++++|.+.|+++... .+.+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~ 176 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVWD 176 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC
Confidence 999999999999999999998763 2233 55655543 488889999999999998764 2346
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL--- 310 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--- 310 (713)
..++..+..+|.+.|++++|..+|+.+.+.+ +.+..+|..+...|...|++++|+..|+++...... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 7788889999999999999999999888764 556889999999999999999999999998876432 34444444
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005127 311 ---------IDFAGHAGKVEAAFEILQEAKNQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (713)
Q Consensus 311 ---------i~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 377 (713)
...|.+.|++++|...|..+.+.... + ..++..+..+|.+.|++++|...++++.+.. +.+...|
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 67788888888888888888775321 2 3467788888888888888888888876542 3467888
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 005127 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILL 416 (713)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 416 (713)
..+..+|...|++++|++.|+++.+ +.|+ ...+..+.
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 8888888888888888888888877 4564 34444443
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5e-20 Score=202.99 Aligned_cols=402 Identities=10% Similarity=0.016 Sum_probs=311.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhCC
Q 005127 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSK 106 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g 106 (713)
..-+.+.+.|++++|+..|+++.+.+ | +...+..++..+...|++++|+..|+.+ .+.+..+|..+..++...|
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 34456679999999999999999987 5 4566777888888999999999999865 3567789999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------------------------------
Q 005127 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------------------------------ 156 (713)
Q Consensus 107 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------ 156 (713)
++++|...|+.+.+.+ +++......++..+........+.+.+..+...
T Consensus 88 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 9999999999999876 344444444444444332222222222111100
Q ss_pred -----CC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHH
Q 005127 157 -----GI---------EPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRS-----KNV--------KPDRVVFNALITA 206 (713)
Q Consensus 157 -----g~---------~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~--------~pd~~~~~~li~~ 206 (713)
.. +.+...+..+...+.. .|++++|+.+|+++.. ..- +.+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 00 0113444444444444 8999999999999987 311 1235677888899
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (713)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (713)
+...|++++|...|.++... .|+..++..+...|...|++++|...|+.+.+.. +.+..+|..+...|...|+++
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 99999999999999998764 3447788889999999999999999999998875 456788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 287 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
+|...|++....... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999887654 56788889999999999999999999988764 3456788999999999999999999999887
Q ss_pred hCCC-CCC----HHHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 367 SIKL-KPT----VSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 367 ~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
+... .++ ...|..+...|.. .|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...|+++.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5321 122 4488999999999 999999999999988752 336778888999999999999999999999884
Q ss_pred CCCCCHH
Q 005127 439 GVIPNLV 445 (713)
Q Consensus 439 g~~p~~~ 445 (713)
.|+..
T Consensus 479 --~~~~~ 483 (514)
T 2gw1_A 479 --ARTME 483 (514)
T ss_dssp --CSSHH
T ss_pred --ccccH
Confidence 45543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.1e-19 Score=200.24 Aligned_cols=373 Identities=6% Similarity=-0.036 Sum_probs=288.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHh
Q 005127 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (713)
Q Consensus 28 ~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (713)
.......+.+.|++++|+..|+++.+.+ |.+...+..++..+...|++++|+..|+.+. +++......++..+..
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 3333455668999999999999999887 7777788888999999999999999998652 3344444444443333
Q ss_pred CCChHHHHHHHHHHHHc-----------------------------------CC---------CCCHHHHHHHHHHHHH-
Q 005127 105 SKDSEGAFQVLRLVQEA-----------------------------------GL---------KADCKLYTTLITTCAK- 139 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~-----------------------------------g~---------~pd~~~~~~li~~~~~- 139 (713)
......+.+.+..+... .. +.+...+..+...+..
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (514)
T 2gw1_A 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199 (514)
T ss_dssp HHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 22222222222111100 00 1113444444444444
Q ss_pred --cCChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005127 140 --SGKVDAMFEVFHEMVN-----AGI--------EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (713)
Q Consensus 140 --~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 204 (713)
.|++++|...|+++.+ ..- +.+..++..+...+...|++++|...|+++.+.. |+..++..+.
T Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~ 277 (514)
T 2gw1_A 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMA 277 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHH
Confidence 7999999999999987 311 2235678889999999999999999999998874 4488889999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 005127 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (713)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 284 (713)
..+...|++++|...++++... .+.+..++..+...|...|++++|...|+...+.. +.+..++..+...|...|+
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKL---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENK 353 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTT---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTC
T ss_pred HHHHHCCCHHHHHHHHHHHhhc---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCC
Confidence 9999999999999999998764 23456788999999999999999999999998876 4467899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHH
Q 005127 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VG----IISYSSLMGACSN---AKNWQ 356 (713)
Q Consensus 285 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~---~g~~~ 356 (713)
+++|...|+++.+.... +..++..+...+...|++++|...+..+.+.... ++ ..++..+...|.+ .|+++
T Consensus 354 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 354 FDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred HHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 99999999999876443 5678889999999999999999999998765311 11 4488999999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH
Q 005127 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (713)
Q Consensus 357 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (713)
+|...|+.+.+.. +.+..+|..+...|.+.|++++|.+.|++..+. .|+....
T Consensus 433 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 433 EATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHH
Confidence 9999999988753 446788999999999999999999999999884 5765443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.3e-18 Score=193.02 Aligned_cols=391 Identities=12% Similarity=0.049 Sum_probs=287.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCCh
Q 005127 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 108 (713)
-+.+.+.|++++|+..|+++.+.. |.+...+..++..+...|++++|++.|+.+. +.+..+|..+...+...|++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH
Confidence 345568999999999999999887 7778888888899999999999999998753 56788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCCHHH------------------
Q 005127 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEPNVHT------------------ 164 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~------------------ 164 (713)
++|...|+ .... .|+. ....+..+...+....|...++.+... ...|+...
T Consensus 110 ~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 99999996 3322 2322 122234445555567788888877542 11222222
Q ss_pred ------------HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHH
Q 005127 165 ------------YGALIDGCAK--------AGQVAKAFGAYGIMRSKNVKPD-------RVVFNALITACGQSGAVDRAF 217 (713)
Q Consensus 165 ------------~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd-------~~~~~~li~~~~~~g~~~~A~ 217 (713)
...+...+.. .|++++|..+|+++.+.. +.+ ..++..+...+...|++++|.
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 1222222111 247888888888888763 222 234666667788888999999
Q ss_pred HHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 218 ~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
+.|.+.... .|+..++..+...|...|++++|...|+.+.+.. +.+..+|..+...|...|++++|...|++..+
T Consensus 264 ~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 264 VLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999888764 4567788888888889999999999999888765 55678888999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCC
Q 005127 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-----LKP 372 (713)
Q Consensus 298 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-----~~p 372 (713)
.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+.. ...
T Consensus 339 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 6543 45778888888999999999999999888764 4456788888889999999999999998876431 111
Q ss_pred CHHHHHHHHHHHHhC----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 373 TVSTMNALITALCDG----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 373 ~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
....+..+...|... |++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+++.+.
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 223344555667777 89999999999888752 335677888888999999999999999888874
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=2.3e-16 Score=164.59 Aligned_cols=312 Identities=12% Similarity=0.065 Sum_probs=184.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
|+..+..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566677777778888888888888877764 4456777778888888888888888888877663 235677777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH
Q 005127 171 GCAKAGQVAKAFGAYGIMRSKNVKP----DRVVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~g~~p----d~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~ 234 (713)
.|...|++++|...|+++.+. .| +...+..+ ...+...|++++|.+.++++... .+.+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 154 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV---CVWDA 154 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCch
Confidence 888888888888888887765 33 33333333 24445555555555555554432 12234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (713)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 314 (713)
.++..+...|...|++++|...++.+.+.. +.+..+|..+...|...|++++|...|++..+.... +...+..+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~-- 230 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ-- 230 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH--
Confidence 444455555555555555555555554443 334445555555555555555555555554443221 1111111100
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhCCC
Q 005127 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-V----STMNALITALCDGDQ 389 (713)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~----~~~~~li~~~~~~g~ 389 (713)
+. .......+...+.+.|++++|...|+++.+.. |+ . ..|..+...|...|+
T Consensus 231 ---------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 231 ---------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp ---------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccC
Confidence 00 00111223555667777777777777766542 22 2 224445667777777
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 390 LPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
+++|++.|++..+. .| +..++..+..++...|++++|...|+++.+.
T Consensus 288 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 288 PVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777664 34 5666777777777777777777777777763
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=4.8e-16 Score=162.08 Aligned_cols=309 Identities=12% Similarity=0.043 Sum_probs=212.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005127 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (713)
Q Consensus 126 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 205 (713)
|...+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567777888888888888888888887764 3367788888888888888888888888887653 335677888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 005127 206 ACGQSGAVDRAFDVLAEMNAEVHPVDP----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (713)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~p----d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 281 (713)
.+...|++++|...|.+.... .| +...+..+...+. ...+..+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 888888888888888887643 44 2223322211100 0123334556667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005127 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (713)
Q Consensus 282 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 361 (713)
.|++++|...|+++.+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776665432 55666667777777777777777777776653 44566777777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHH------------HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCC
Q 005127 362 YEHMKSIKLKPTVSTMN------------ALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-----TYSILLVACERKDD 424 (713)
Q Consensus 362 ~~~m~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~ 424 (713)
|+...+.. +.+...+. .+...+.+.|++++|++.|+++.+. .|+.. .+..+..++.+.|+
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccC
Confidence 77776542 22333333 3366789999999999999999875 35432 34456789999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHHHHHhh
Q 005127 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 469 (713)
Q Consensus 425 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~ 469 (713)
+++|...+++..+.. +.+...+..+..++.+ .+++|....+...
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999998852 2255666666666554 5666666554433
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=2.6e-17 Score=182.40 Aligned_cols=374 Identities=10% Similarity=0.011 Sum_probs=283.8
Q ss_pred CCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 005127 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (713)
Q Consensus 22 ~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (713)
|.++......-..+.+.|++++|++.|+++.+.+ |.+...+..++..+...|++++|+..|+.+. .+....+..+..
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~ 132 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEP 132 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------C
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHH
Confidence 4444555555566679999999999999999887 7777888888999999999999999997542 122222233444
Q ss_pred HHhCCChHHHHHHHHHHHHc------CCCCCHHH------------------------------HHHHHHHHH-------
Q 005127 102 CASSKDSEGAFQVLRLVQEA------GLKADCKL------------------------------YTTLITTCA------- 138 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~------g~~pd~~~------------------------------~~~li~~~~------- 138 (713)
+...+....|...++.+... ...|+... ...+...+.
T Consensus 133 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (537)
T 3fp2_A 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence 55555667788888777542 11222221 122222211
Q ss_pred -HcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005127 139 -KSGKVDAMFEVFHEMVNAGIEPN-------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (713)
Q Consensus 139 -~~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 210 (713)
..+++++|..+|+++.+.... + ..++..+...+...|++++|...|+++... .|+..+|..+...+...
T Consensus 213 ~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHh
Confidence 124789999999999876422 2 235777778889999999999999999986 56688899999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005127 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (713)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 290 (713)
|++++|.+.|.++... .+.+..++..+...|...|++++|...|+...+.+ +.+..+|..+...|...|++++|..
T Consensus 290 ~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDL---NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp SCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998764 23457789999999999999999999999998876 4466889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCH
Q 005127 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNA----------KNW 355 (713)
Q Consensus 291 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~----------g~~ 355 (713)
.|+++.+.... +...+..+...+...|++++|...++.+.+.. .......+..+...|.+. |++
T Consensus 366 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 366 FFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 99999887543 56788899999999999999999999987642 112233455566778888 999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005127 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (713)
Q Consensus 356 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (713)
++|...|++..+.. +.+...|..+...|.+.|++++|.+.|++..+. .|+.
T Consensus 445 ~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~ 495 (537)
T 3fp2_A 445 NAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL--ARTM 495 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--C
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCc
Confidence 99999999998753 456788999999999999999999999999874 4543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=4.8e-16 Score=160.19 Aligned_cols=281 Identities=12% Similarity=0.021 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 208 (713)
.+..+...+...|++++|.++|+++.+.. +.+..++..++..+...|++++|..+++++.+.. +.+...|..+...+.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 34444444445555555555555544432 1123334444444455555555555555554432 223444444555555
Q ss_pred hcC-CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 209 QSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 209 ~~g-~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
..| ++++|.+.|++.... .+.+..++..+...|...|++++|...|+...+.. +.+...+..+...|...|++++
T Consensus 102 ~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTL---EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTT---CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HhhhhHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 555 555555555554432 11223444455555555555555555555554433 2233444445555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKNWQKAL 359 (713)
Q Consensus 288 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~~~~~~~~~li~~~~~~g~~~~A~ 359 (713)
|...|++..+.... +...+..+...+...|++++|...+..+.+.. .+....++..+...|.+.|++++|.
T Consensus 178 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 55555555544322 34455555555555555555555555544321 1222445566666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 005127 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC 419 (713)
Q Consensus 360 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 419 (713)
..|++..+.. +.+...|..+...|...|++++|.+.|++..+. .| +...+..+..++
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 6666655432 234455666666666666666666666665542 34 344444444444
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=9.4e-14 Score=152.04 Aligned_cols=365 Identities=11% Similarity=0.006 Sum_probs=300.8
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHh----hHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHh----CCChHHHHHH
Q 005127 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (713)
Q Consensus 44 A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l 114 (713)
++..++...+.| +...+..+...+.. .++.++|+.+|+... ..+...+..|...|.. .+++++|...
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 355555555544 22333344445544 678899999988643 4577888888888988 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 005127 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFGAYG 186 (713)
Q Consensus 115 ~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~ 186 (713)
|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...+..|...|.. .+++++|+..|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998865 67778888888888 789999999999998875 67788888888887 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 005127 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYK 258 (713)
Q Consensus 187 ~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~A~~~~~ 258 (713)
+..+.| +...+..|...|.. .++.++|.+.|.+.... .+..++..+...|.. .+++++|...|+
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 998875 67888888888888 89999999999988763 356678888888886 889999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 005127 259 MIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQE 329 (713)
Q Consensus 259 ~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~a~~~~~~ 329 (713)
...+.+ ++..+..+...|.. .+++++|+..|++..+.| +...+..+...|... ++.++|...+..
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 988765 46778888888887 899999999999998775 456777788888877 899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHH
Q 005127 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKS 402 (713)
Q Consensus 330 m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 402 (713)
..+.+ +...+..|..+|.+.| +.++|.+.|++..+. .+...+..|...|.. .+++++|++.|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99876 4677888888888866 789999999999885 478889999999998 8999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 005127 403 LGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGVI 441 (713)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~ 441 (713)
.| +...+..+-..+.+ .++.++|...|++..+.+..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 56777778888887 89999999999999987643
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=8.2e-16 Score=158.45 Aligned_cols=292 Identities=14% Similarity=0.070 Sum_probs=238.5
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (713)
.+...+..+...+...|++++|..+|+.+.+.. +.+..++..++..+...|++++|..+++++.+.. +.+..+|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455566777788888899999999999988765 4455567777888889999999999999998864 33677888899
Q ss_pred HHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcC
Q 005127 170 DGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (713)
Q Consensus 170 ~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g 248 (713)
..|...| ++++|...|++..... +.+...|..+...+...|++++|.+.|.+..... +.+..++..+...|...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHh
Confidence 9999999 9999999999998764 4457788889999999999999999999887642 234567777888999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCH
Q 005127 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--------VIPDEVFLSALIDFAGHAGKV 320 (713)
Q Consensus 249 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~li~~~~~~g~~ 320 (713)
++++|...|+...+.. +.+..++..+...|...|++++|...|++..+.. ...+..++..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998876 5678899999999999999999999999887642 123457888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhCCCh
Q 005127 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQL 390 (713)
Q Consensus 321 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~~ 390 (713)
++|...++...+.. +.+..++..+...|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 99999999988765 4467889999999999999999999999987653 34677888888777 344543
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.6e-14 Score=159.85 Aligned_cols=394 Identities=11% Similarity=0.084 Sum_probs=263.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHH-HhCCChHHHH
Q 005127 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVC-ASSKDSEGAF 112 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~-~~~g~~~~A~ 112 (713)
.+.|++++|..+|+++.+.. |.+..+....+....+.|++++|..+|++.. .|++..|...+... ...|+.+.|.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHH
Confidence 46799999999999999765 7777777778888888899999999998754 46887888777533 3567777666
Q ss_pred H----HHHHHHHc-CCCC-CHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----
Q 005127 113 Q----VLRLVQEA-GLKA-DCKLYTTLITTCAK---------SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----- 172 (713)
Q Consensus 113 ~----l~~~m~~~-g~~p-d~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----- 172 (713)
+ +|+..... |..| +...|...+....+ .|+++.|..+|++..+.........|.......
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 5 66665543 5443 46677777776654 678899999999988732111123444332211
Q ss_pred --------HHcCCHHHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHH
Q 005127 173 --------AKAGQVAKAFGAYGIMR------SKN---VKPD--------RVVFNALITACGQS----GAV----DRAFDV 219 (713)
Q Consensus 173 --------~~~g~~~~A~~l~~~m~------~~g---~~pd--------~~~~~~li~~~~~~----g~~----~~A~~~ 219 (713)
.+.+++..|..++.++. +.. ++|+ ...|...+...... ++. ..+..+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 12345667776666532 211 2343 23455544333221 222 366677
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 005127 220 LAEMNAEVHPVDPDHITIGALMKACAN-------AGQVD-------RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (713)
Q Consensus 220 ~~~m~~~~~~~~pd~~~~~~ll~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 285 (713)
|++.... .+.+...|..+...+.+ .|+++ +|..+|+...+.-.+.+...|..++..+.+.|++
T Consensus 261 y~~al~~---~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 261 YEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 7777653 13345667777766665 68876 7888888877632345678888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHH
Q 005127 286 EFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYE 363 (713)
Q Consensus 286 ~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~l~~ 363 (713)
++|..+|+++.+.... + ...|...+..+.+.|+++.|..+|....+.. +.+...|...... +...|+.++|..+|+
T Consensus 338 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 8888888888875322 2 2467777777778888888888888887653 2223333322222 335788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPN--TITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 364 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..++.++.+
T Consensus 416 ~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 416 LGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 776542 3357788888888888888888888888887753 2332 44677777777778888888888877765
No 19
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=190.16 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 339 IISYSSLMGACSNAKNWQKALELYEHMKS---IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (713)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (713)
..+||+||++||++|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|+++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655542 245566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 416 LVACERKDDV-EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (713)
Q Consensus 416 l~a~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 456 (713)
|.++++.|+. ++|.++|++|.+.|+.||..+|+|+++.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666665553 4555666666666666666666666554433
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=1.4e-13 Score=150.62 Aligned_cols=338 Identities=13% Similarity=0.042 Sum_probs=287.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHh----hHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHh----CCCh
Q 005127 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDS 108 (713)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~ 108 (713)
.+++++|+..|++..+.|. ...+..+...+.. .++.++|+.+|++.. ..+...+..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGY----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 7899999999999998762 3344456666666 788999999998754 4577888888888888 8899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 005127 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAK 180 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 180 (713)
++|+..|+...+.| +...+..|...|.. .++.++|.++|++..+.| +...+..|...|.. .+++++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999998876 67788888888887 789999999999999874 78889999999998 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 005127 181 AFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDR 252 (713)
Q Consensus 181 A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~ 252 (713)
|+.+|++..+.| +...+..+...|.. .+++++|.++|++.... .+...+..+..+|.. .+++++
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-----GNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 999999998876 67788888888876 78999999999998753 345677778888888 899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 005127 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAF 324 (713)
Q Consensus 253 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~a~ 324 (713)
|...|+...+.+ ++..+..+...|... +++++|+..|++..+.| +...+..+...|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998765 467888888888887 89999999999999875 4567777888887766 789999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHH
Q 005127 325 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEV 396 (713)
Q Consensus 325 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l 396 (713)
..|+...+.+ +...+..|..+|.. .+++++|...|++..+.+ +...+..|...|.. .++.++|...
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 67889999999998 899999999999998854 67888889999988 8999999999
Q ss_pred HHHHHHCCC
Q 005127 397 LSDMKSLGL 405 (713)
Q Consensus 397 ~~~m~~~g~ 405 (713)
|++..+.+.
T Consensus 426 ~~~A~~~~~ 434 (490)
T 2xm6_A 426 FDTASTNDM 434 (490)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHCCC
Confidence 999988753
No 21
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=192.19 Aligned_cols=161 Identities=12% Similarity=0.206 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQ---EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (713)
..|||++|++|++.|++++|.++|..|. ..|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC------HHHHHHHH
Q 005127 169 IDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALM 241 (713)
Q Consensus 169 i~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd------~~~~~~ll 241 (713)
|+++++.|+ .++|.++|++|.+.|+.||.++|+.++.++.+.+-++.+ .++. .++.|+ ..+...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv~---P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV----HKVK---PTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH----GGGC---CCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH----HHhC---cccCCCCCCcccccchHHHH
Confidence 999999998 578999999999999999999999999877765433333 3332 234433 55666677
Q ss_pred HHHHHcCC---------HHHHHHHHHH
Q 005127 242 KACANAGQ---------VDRAREVYKM 259 (713)
Q Consensus 242 ~~~~~~g~---------~~~A~~~~~~ 259 (713)
+.|.+.+. .++-...|++
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHH
Confidence 78877652 4555566653
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=4.7e-16 Score=163.25 Aligned_cols=261 Identities=13% Similarity=0.067 Sum_probs=132.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 209 (713)
+..+...+.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|+..|+++.+.. +.+..++..+...|..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3344444444444555555444444432 2234444444444555555555555554444432 2234444444455555
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCC-HHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHH
Q 005127 210 SGAVDRAFDVLAEMNAEVHPVDPD-HITIGA---------------LMKACANAGQVDRAREVYKMIHKYNIKG-TPEVY 272 (713)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~---------------ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~ 272 (713)
.|++++|.+.|.++... .|+ ...+.. .+..+...|++++|...|+.+.+..... +..++
T Consensus 145 ~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 145 ESLQRQACEILRDWLRY----TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp TTCHHHHHHHHHHHHHT----STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHHh----CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 55555555555544432 111 111100 1222225666666666666665543211 45666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (713)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 352 (713)
..+...|.+.|++++|+..|+++...... +..++..+...+...|++++|...++.+.+.. +.+..++..+..+|.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 66666666666666666666666554322 45556666666666666666666666655543 33455566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005127 353 KNWQKALELYEHMKSIKLK----------PTVSTMNALITALCDGDQLPKTMEVLS 398 (713)
Q Consensus 353 g~~~~A~~l~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (713)
|++++|...|+++.+.... ....+|..+..+|...|+.++|..+++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 6666666666655432100 014555666666666666666655554
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=5.7e-16 Score=162.56 Aligned_cols=285 Identities=11% Similarity=-0.068 Sum_probs=229.1
Q ss_pred hHHHHHHHH-HhhhCC---C--C--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 005127 74 QKAIKEAFR-FFKLVP---N--P--TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (713)
Q Consensus 74 ~~~~~~A~~-~~~~~~---~--~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 145 (713)
.+++++|+. .|+... + | +...+..+...+.+.|++++|...|+.+.+.. +.+..++..+..+|...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 467888888 777532 1 2 34567888899999999999999999999875 5578899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhc
Q 005127 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA---------------LITACGQS 210 (713)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~---------------li~~~~~~ 210 (713)
|.+.|+++.+.. +.+..++..+...|...|++++|+..|+++..... .+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 999999998875 44788999999999999999999999999987642 22222221 23344488
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005127 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (713)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 290 (713)
|++++|...|.++.... +-.++..++..+...|.+.|++++|...|+.+.+.. +.+..+|..+...|.+.|++++|+.
T Consensus 195 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998642 112257889999999999999999999999998875 5578899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCHHHHHH
Q 005127 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV----------GIISYSSLMGACSNAKNWQKALE 360 (713)
Q Consensus 291 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----------~~~~~~~li~~~~~~g~~~~A~~ 360 (713)
.|+++.+... .+...+..+..+|.+.|++++|...+..+.+..... ...+|..+..+|.+.|+.++|..
T Consensus 273 ~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999988754 367889999999999999999999999987653111 26899999999999999999998
Q ss_pred HHHH
Q 005127 361 LYEH 364 (713)
Q Consensus 361 l~~~ 364 (713)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=6.3e-17 Score=167.71 Aligned_cols=283 Identities=13% Similarity=0.152 Sum_probs=133.5
Q ss_pred HhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005127 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (713)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 151 (713)
.+.|++++|.+++++++.|+ +|..+..++.+.|++++|++.|.+ .+|..+|..++..+...|++++|.+.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34567889999999886654 899999999999999999999964 3577789999999999999999999877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 005127 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (713)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 231 (713)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 77664 4567889999999999999999888874 367789999999999999999999999876
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (713)
Q Consensus 232 pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 311 (713)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHH
Confidence 26889999999999999999999988 25789999999999999999996655542 22344456788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 005127 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 383 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~~~~p------~~~~~~~li~~ 383 (713)
..|.+.|.+++|..+++...... +-....|+-|...|++- +++.+..++|.. +.+++| +...|..+...
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887665 55577777777777764 456666666652 122222 34568899999
Q ss_pred HHhCCChhHHHHH
Q 005127 384 LCDGDQLPKTMEV 396 (713)
Q Consensus 384 ~~~~g~~~~A~~l 396 (713)
|.+.++++.|..+
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999998874
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=4.2e-13 Score=148.45 Aligned_cols=396 Identities=10% Similarity=0.071 Sum_probs=282.1
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 005127 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (713)
Q Consensus 48 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 124 (713)
|++..+.+ |.+...+..++.. .+.|++++|..+|+.+. +.+...|..++..+.+.|++++|..+|+++++. .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55666665 6666666666664 56789999999998753 457789999999999999999999999999976 4
Q ss_pred CCHHHHHHHHHHH-HHcCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHH
Q 005127 125 ADCKLYTTLITTC-AKSGKVDAMFE----VFHEMVNA-GIEP-NVHTYGALIDGCAK---------AGQVAKAFGAYGIM 188 (713)
Q Consensus 125 pd~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~l~~~m 188 (713)
|+...|...+... ...|+++.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6877777777533 45677777665 77776543 5443 56788888877665 78999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHh------hhCC-CCCCCC--------HHHHHHH
Q 005127 189 RSKNVKPDRVVFNALITAC-------------GQSGAVDRAFDVLAEM------NAEV-HPVDPD--------HITIGAL 240 (713)
Q Consensus 189 ~~~g~~pd~~~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~~-~~~~pd--------~~~~~~l 240 (713)
.+....+....|....... .+.+++..|..++.++ .... ..+.|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111123444322211 1245577777777652 1110 012343 2355555
Q ss_pred HHHHHHc----CCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHC
Q 005127 241 MKACANA----GQV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKK 298 (713)
Q Consensus 241 l~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~ 298 (713)
+...... ++. ..+..+|+...... +.++..|..++..+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433222 233 47778898888764 5678999999988876 69987 899999998863
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005127 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (713)
Q Consensus 299 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 377 (713)
-..-+...|..++..+.+.|++++|..+|+.+.+.. +.+ ..+|..++..+.+.|++++|.++|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 222367889999999999999999999999999863 223 3589999999999999999999999998752 1223333
Q ss_pred HHHHH-HHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHH
Q 005127 378 NALIT-ALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIG 452 (713)
Q Consensus 378 ~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~ 452 (713)
..... .+...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|+.+|++....+ ..|+ ...|...+.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 32222 234689999999999998874 45 57888899999999999999999999999863 3443 335555554
Q ss_pred H
Q 005127 453 M 453 (713)
Q Consensus 453 ~ 453 (713)
.
T Consensus 472 ~ 472 (530)
T 2ooe_A 472 F 472 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.2e-14 Score=147.03 Aligned_cols=257 Identities=12% Similarity=0.147 Sum_probs=191.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCCh
Q 005127 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 108 (713)
.........|++..|+..++...... |.+. ..+..+.+.+...|++++|+..++...+|+..++..+...+...++.
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcH
Confidence 34555677899999999887765433 4442 35566677888888889998888776667777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005127 109 EGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 187 (713)
++|++.++.+...+..| +...+..+...+...|++++|++.+++ +.+..++..+...|.+.|++++|...|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 89999888888776544 556667777888888899998888877 35777888888888888888888888888
Q ss_pred HHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005127 188 MRSKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (713)
Q Consensus 188 m~~~g~~pd~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 264 (713)
+.+.. |+.... ..++..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...|++..+.+
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88763 443211 12233344457888888888888764 24567778888888888888888888888877765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCC
Q 005127 265 IKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKGV 300 (713)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~ 300 (713)
+.++.++..++..+...|+.++ +.++++++.+..+
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 5577788888888888888765 5677787776643
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=3e-15 Score=157.04 Aligned_cols=228 Identities=14% Similarity=0.055 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 209 (713)
+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++|+..|+++.+.. +.+..+|..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 3333344444444444444444443332 1233344444444444444444444444444331 2233444444444444
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHH
Q 005127 210 SGAVDRAFDVLAEMNAEVHPVDPD-----------HITIGALMKACANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAIN 277 (713)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~pd-----------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~ 277 (713)
.|++++|.+.|+++... .|+ ...+..+...|.+.|++++|..+|+.+.+.... .+..+|..+..
T Consensus 146 ~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQ----NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp TTCHHHHHHHHHHHHHH----CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHh----CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 44444444444444321 111 112222334444444455555555444443211 03444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (713)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 357 (713)
.|...|++++|+..|++..+.... +..++..+..+|...|++++|...++.+.+.. +.+..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 444444444444444444443221 33344444444444444444444444443332 1223344444444444444444
Q ss_pred HHHHHHHH
Q 005127 358 ALELYEHM 365 (713)
Q Consensus 358 A~~l~~~m 365 (713)
|...|+++
T Consensus 300 A~~~~~~a 307 (365)
T 4eqf_A 300 AVSNFLTA 307 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=2.1e-15 Score=158.24 Aligned_cols=267 Identities=14% Similarity=0.019 Sum_probs=185.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 005127 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (713)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~l 240 (713)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+...|...|++++|.+.|+++.... +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 34457788888889999999999999888764 4567888888889999999999999998887641 3346788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 005127 241 MKACANAGQVDRAREVYKMIHKYNIK---------GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSAL 310 (713)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~l 310 (713)
..+|...|++++|...|+.+.+.... .....+..+...|...|++++|+..|+++.+.... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 88888899999998888888764310 01223344567777788888888888887776432 256777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 005127 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (713)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 390 (713)
...|...|++++|...++.+.+.. +.+..+++.+..+|.+.|++++|...|+++.+.. +.+..+|..+...|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 777888888888888887777654 3456777777888888888888888887776642 33467777777778888888
Q ss_pred hHHHHHHHHHHHCC---CCC--------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 391 PKTMEVLSDMKSLG---LCP--------NTITYSILLVACERKDDVEVGLMLLS 433 (713)
Q Consensus 391 ~~A~~l~~~m~~~g---~~p--------~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (713)
++|++.|+++.+.. ..| +...|..+..++...|+.+.+..+..
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888877766521 000 24566777777777777777666553
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=9.7e-16 Score=158.87 Aligned_cols=288 Identities=15% Similarity=0.145 Sum_probs=136.5
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChH
Q 005127 31 SYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (713)
Q Consensus 31 ~~~~L~-~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 109 (713)
..+.|+ +.|++++|.+.++++... .....++..+.+.|++++|++.|.+. +|..+|..++.++...|+++
T Consensus 8 a~~~ll~~~~~ld~A~~fae~~~~~-------~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 8 AVQVLIEHIGNLDRAYEFAERCNEP-------AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHhCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHH
Confidence 355566 788899999999999432 24557888899999999999999764 57779999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
+|...++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|...|..+
T Consensus 79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 79 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 999977776664 5567889999999999999999998884 478889999999999999999999999987
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 005127 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (713)
Q Consensus 190 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 269 (713)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|...... +...+
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~a 207 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 207 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCH
Confidence 36999999999999999999999977 2678999999999999999999665543 33445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISV------GIIS 341 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~------~~~~ 341 (713)
.-...++..|.+.|++++|..+++...... .-....|+-+.-+|++- +++.+.++.|.. +.+++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 556679999999999999999999988665 34667777777777653 455555555542 223333 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 005127 342 YSSLMGACSNAKNWQKALEL 361 (713)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~l 361 (713)
|..++-.|.+.++++.|...
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 88999999999999988775
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=1.2e-14 Score=149.37 Aligned_cols=152 Identities=9% Similarity=0.012 Sum_probs=72.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 323 (713)
+...|++++|...++.+.+.. +.+..++..+...|...|++++|...++++.+.... +..++..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHH
Confidence 444455555555555554443 234455555555555555555555555555443221 344444444555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhCCChhH
Q 005127 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-----------TVSTMNALITALCDGDQLPK 392 (713)
Q Consensus 324 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~ 392 (713)
...++.+.+.. +.+..++..+...|.+.|++++|.+.|++..+..... +...|..+..+|.+.|++++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 55555444432 2234444445555555555555555554443321000 23444444444555555555
Q ss_pred HHHHHH
Q 005127 393 TMEVLS 398 (713)
Q Consensus 393 A~~l~~ 398 (713)
|..+++
T Consensus 305 A~~~~~ 310 (327)
T 3cv0_A 305 VELTYA 310 (327)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 544443
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=2.3e-14 Score=147.31 Aligned_cols=266 Identities=8% Similarity=-0.092 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (713)
...|..+...+...|++++|..+|+.+.+.. +.+..++..+..++...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3455667777888899999999999888764 4577788888899999999999999999988764 3467888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHhhhCCCCCCCCHHH
Q 005127 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL--------------IT-ACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~ 236 (713)
|...|++++|...|+++.... +.+...+..+ .. .+...|++++|.+.+.++.... +.+..+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS---TTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHHH
Confidence 999999999999999988763 2222222222 22 3777889999999999987642 346788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 316 (713)
+..+...|.+.|++++|...++.+.+.. +.+..+|..+...|...|++++|...|+++.+.... +..++..+...|..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 8999999999999999999999998875 557889999999999999999999999999887543 67889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 317 AGKVEAAFEILQEAKNQGISV-----------GIISYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 317 ~g~~~~a~~~~~~m~~~g~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
.|++++|...++.+.+..... +..++..+..+|.+.|+.++|..++++.
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999987764221 4788999999999999999999998654
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.65 E-value=5.1e-12 Score=145.50 Aligned_cols=374 Identities=14% Similarity=0.169 Sum_probs=271.3
Q ss_pred CcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 005127 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (713)
Q Consensus 24 ~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (713)
++..-..+...++..|.+.+|++++++....+- +..+.....+++....+. +......+.....+-+ ..-+...|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 344445555677899999999999999985431 224445555444433332 2233333333322222 34467788
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005127 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (713)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (713)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|+
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999999853 12223344433 6788999999988663 5788999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005127 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (713)
Q Consensus 183 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 262 (713)
+.|.+. -|...|..++.+|.+.|++++|.+.|....+. .++....+.++.+|++.+++++..... +
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~----~~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 999664 37888999999999999999999999876653 344444456899999999988644442 1
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005127 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (713)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 342 (713)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+.+. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 345567778999999999999999999985 37999999999999999999999876 357899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHH--
Q 005127 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVAC-- 419 (713)
Q Consensus 343 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~-- 419 (713)
..+-.+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++.... +.|.. ..|+-+..++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHh
Confidence 999999999999999998776543 5677788999999999999999999987764 34433 3454444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHh
Q 005127 420 ERKDDVEVGLMLLSQAKEDGVIP------NLVMFKCIIGMCSR 456 (713)
Q Consensus 420 ~~~g~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~r 456 (713)
.+.++..++.+.|..-. .+.| +...|.-++-+|.+
T Consensus 1327 y~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~ 1367 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDK 1367 (1630)
T ss_pred CCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHh
Confidence 44556666666664322 3333 34556666666543
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=5.3e-14 Score=142.34 Aligned_cols=248 Identities=13% Similarity=0.106 Sum_probs=131.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 137 CAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (713)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 214 (713)
....|++..|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 33455666666555544322 2221 23344555666666666666544331 2344555555556666666666
Q ss_pred HHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 215 RAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (713)
Q Consensus 215 ~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 293 (713)
+|.+.++++... +..|+ ...+..+..+|...|++++|.+.++. +.+...+..++..|.+.|++++|.+.|+
T Consensus 83 ~A~~~l~~ll~~--~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 83 AIVAELDREMSR--SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHS--CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhc--ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666665442 22232 33344444556666666666666654 3445566666666666666666666666
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005127 294 DMTKKGVIPDEVFL---SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (713)
Q Consensus 294 ~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 370 (713)
++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+..+++.+..+|.+.|++++|...|++..+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 665543 332111 112222233356666666666665552 4455566666666666666666666666655432
Q ss_pred CCCHHHHHHHHHHHHhCCChhH-HHHHHHHHHH
Q 005127 371 KPTVSTMNALITALCDGDQLPK-TMEVLSDMKS 402 (713)
Q Consensus 371 ~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~ 402 (713)
+.+..++..++..+...|+.++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2345556666666666666554 3455555555
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=3.8e-13 Score=146.29 Aligned_cols=359 Identities=11% Similarity=-0.040 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhC------------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC------
Q 005127 61 KVYHARFFNVCKSQKAIKEAFRFFKLV------------PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG------ 122 (713)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ 122 (713)
..++..++.++...|+.++|++.|++. .+....+|+.+..+|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345555666666677777777776542 12345677777777777777777777776655421
Q ss_pred C-CCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCC
Q 005127 123 L-KADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNAGIEPNVHTYGALIDG---CAKAGQVAKAFGAYGIMRSKNVKPD 196 (713)
Q Consensus 123 ~-~pd~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~pd 196 (713)
. .....++..+..++.+. +++++|.+.|++..+... -+...+..+..+ +...++.++|++.|++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0 11244555555555443 356777777777766532 234444444433 234456667777777666543 334
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 005127 197 RVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (713)
Q Consensus 197 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 272 (713)
..++..+...+.. .++.++|.+.+++.... .+.+..++..+...|.+.|++++|...|+...+.. +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 5555555444443 34566777777766543 13345566677777777777777777777776654 4455666
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 273 TIAINCCSQT-------------------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 273 ~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
..+...|... +.++.|...|++..+.... +..++..+...|...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6555554322 1234455555554443221 2334445555555566666666666555554
Q ss_pred CCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH
Q 005127 334 GISVGII--SYSSLMG-ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (713)
Q Consensus 334 g~~~~~~--~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 410 (713)
...+... .+..+.. .+...|+.++|...|++..+. .|+...+...+ ..+.++++...... +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HHHHHHHHHHHHhC-CCCHH
Confidence 3222111 1122211 123455556666655555543 23322221111 12223333333321 22445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 411 TYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
+|..+..++...|++++|++.|++.++.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5666666666666666666666666553
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.60 E-value=1.3e-11 Score=142.24 Aligned_cols=313 Identities=12% Similarity=0.144 Sum_probs=236.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHH
Q 005127 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 111 (713)
...++..|++++|..+|++... .. .. +..+....+++++|.++.+++. +..+|..+..++...|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~----~~-~A----~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV----NT-SA----VQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC----HH-HH----HHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 3456689999999999988631 11 11 1112336678999999988774 466788999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 112 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
...|.+. .|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++. +-| .+
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleel-e~f---I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL-EEF---IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHH-HHH---Hh-
Confidence 9998553 467788889999999999999999998877654 4444444588899999888853 333 21
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 005127 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (713)
Q Consensus 192 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 271 (713)
.++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 346677778888999999999999999864 27888999999999999999999876 34588
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 999999999999988888766542 2355677789999999999999999998776554 3445567666666665
Q ss_pred c--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhCCChhHHHH
Q 005127 352 A--KNWQKALELYEHMKSIKLKP------TVSTMNALITALCDGDQLPKTME 395 (713)
Q Consensus 352 ~--g~~~~A~~l~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~ 395 (713)
. +++.++.++|..-.. ++| +...|.-++..|.+.|+++.|..
T Consensus 1327 y~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred CCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4 556677777764332 222 46679999999999999999984
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=9.4e-13 Score=143.16 Aligned_cols=365 Identities=11% Similarity=-0.018 Sum_probs=239.9
Q ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHHc-------CCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC-------C--
Q 005127 29 LHSYNRLI----RQGRISECIDLLEDMERK-------GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV-------P-- 88 (713)
Q Consensus 29 ~~~~~~L~----~~g~~~~A~~l~~~m~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~-- 88 (713)
...||.|. ..|++++|++.|++..+. ...|.....+..++.++...|++++|...|++. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 44566544 789999999999987642 112444556667888888899999999888753 1
Q ss_pred --CCCHHHHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCChhHHHHHHHHHHHCCCCCC
Q 005127 89 --NPTLSTFNMLMSVCAS--SKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEMVNAGIEPN 161 (713)
Q Consensus 89 --~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (713)
.....+++.+..++.. .+++++|...|++..+.. +-+...+..+..+ +...++.++|++.|++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1235566666555554 457999999999998874 3355556555554 445678889999999988764 335
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHH
Q 005127 162 VHTYGALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (713)
Q Consensus 162 ~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~ 237 (713)
..++..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|.+.|.+..... +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHHHH
Confidence 6667666655554 467789999999987764 5567889999999999999999999999987641 2345566
Q ss_pred HHHHHHHHHc-------------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 238 GALMKACANA-------------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 238 ~~ll~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
..+...|... +..+.|...|+...+.+ +.+..++..+...|...|++++|+..|++....
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6665555332 23567778888777655 445567888999999999999999999999887
Q ss_pred CCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005127 299 GVIPDEV--FLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375 (713)
Q Consensus 299 g~~p~~~--t~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 375 (713)
...|... .+..+.. ...+.|+.++|+..|.+..+.. |+..... +....+.++++...+.. +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHH
Confidence 5543221 1222222 2346899999999999988864 3332221 22344455555554432 45678
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHH
Q 005127 376 TMNALITALCDGDQLPKTMEVLSDMKSLG-LCPNTITY 412 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~ 412 (713)
+|+.|...|...|++++|++.|++.++.| ..|+..++
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999999988754 34554443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.1e-12 Score=127.50 Aligned_cols=90 Identities=12% Similarity=-0.007 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 005127 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (713)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 388 (713)
.+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|+...+.. +.+...|..+...|...|
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444333322 1223334444444444444444444444443321 122334444444444444
Q ss_pred ChhHHHHHHHHH
Q 005127 389 QLPKTMEVLSDM 400 (713)
Q Consensus 389 ~~~~A~~l~~~m 400 (713)
++++|.+.|++.
T Consensus 222 ~~~~A~~~~~~a 233 (258)
T 3uq3_A 222 EYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444444444443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=3.4e-12 Score=126.02 Aligned_cols=222 Identities=13% Similarity=0.088 Sum_probs=108.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 005127 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPD----RVVFNAL 203 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd----~~~~~~l 203 (713)
+..+...+...|++++|...|++..+.. .+..+|..+..+|...|++++|+..|++..+... .++ ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 3334444444444444444444444444433210 011 2344444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 005127 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (713)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 283 (713)
...+...|++++|.+.|.+.... .|+. ..+.+.|++++|...++.+.... +.+...|..+...+...|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE----HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhc----Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 44444445555555444444432 2221 22344445555555555554432 223345555555555666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 363 (713)
++++|...|++..+.... +..++..+..+|...|++++|...+....+.. +.+..++..+...|.+.|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666655554332 45555556666666666666666666655543 3345566666666666666666666666
Q ss_pred HHHh
Q 005127 364 HMKS 367 (713)
Q Consensus 364 ~m~~ 367 (713)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=2e-12 Score=139.48 Aligned_cols=346 Identities=11% Similarity=0.016 Sum_probs=190.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHH---HHHHHHhhhCCCCCHHHHHHHHHHHH
Q 005127 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCA 103 (713)
Q Consensus 27 ~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~ 103 (713)
|+...-+.+.+.|++++|+++|++..+.|.. ... ..+...+...|.. ++|+.+|+.....+...+..+...+.
T Consensus 5 p~~~la~~~~~~g~~~~A~~~~~~aa~~g~~-~A~---~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 5 PDQRLANEALKRGDTVTAQQNYQQLAELGYS-EAQ---VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLA 80 (452)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-TGG---GTCC----------------------------CHHHHHHHHH
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHCCCH-HHH---HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456667778999999999999999887732 211 1223333445555 88999988766556667777777555
Q ss_pred hCC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005127 104 SSK-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (713)
Q Consensus 104 ~~g-----~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (713)
..+ ++++|+..|++..+.|.. + .+..|...|...+..+ .+.+.+......| +...+..|...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 678888888888887633 2 5666777776655433 3444555544443 344566666677766
Q ss_pred CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc-
Q 005127 176 GQV----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA- 247 (713)
Q Consensus 176 g~~----~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~- 247 (713)
+.+ +.+..++...... +...+..|...|...| +.++|++.|.+....+ .++...+..|..+|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGG
T ss_pred CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCC
Confidence 643 3444444433322 2236666777777777 7777777777766542 34444445555556444
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 005127 248 ---GQVDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--- 318 (713)
Q Consensus 248 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--- 318 (713)
+++++|...|+... .+ ++..+..+... | ...+++++|+..|++..+.| +...+..+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 57777777777766 32 34556555555 3 45677777777777776665 4455555555555 34
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CC
Q 005127 319 --KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GD 388 (713)
Q Consensus 319 --~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g 388 (713)
++++|...|.... .| +...+..|..+|.. ..++++|...|+...+.| +......|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCC
Confidence 6777777766655 32 45556666666655 236666777666666544 22233444444442 23
Q ss_pred ChhHHHHHHHHHHHCC
Q 005127 389 QLPKTMEVLSDMKSLG 404 (713)
Q Consensus 389 ~~~~A~~l~~~m~~~g 404 (713)
+.++|...|+...+.|
T Consensus 373 d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCC
Confidence 5556666655555544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=4.8e-12 Score=122.00 Aligned_cols=57 Identities=16% Similarity=-0.042 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
+..+..++...|++++|+..|++..+.. .+...+..+..+|...|++++|...|++.
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 177 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKA 177 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333444444444443333333 23333333333344444444444444333
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=6.2e-12 Score=121.18 Aligned_cols=198 Identities=13% Similarity=-0.037 Sum_probs=141.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (713)
Q Consensus 232 pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 311 (713)
++...+..+...+.+.|++++|...|+...+.+ +.+...|..+...+.+.|++++|+..|++..+.... +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 344556666666677777777777777666654 455666777777777777777777777776665433 556666666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005127 312 DFAGHA-----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (713)
Q Consensus 312 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 380 (713)
.++... |++++|...++...+.. +-+...+..+...|...|++++|...|++..+.. .+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 677777 99999999999988864 3467888999999999999999999999998876 788899999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 381 ITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
...|...|++++|+..|++..+. .| +...+..+..++...|++++|+..|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999998874 45 66778888899999999999999887654
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=2.7e-11 Score=119.31 Aligned_cols=164 Identities=10% Similarity=-0.014 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFA 314 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~ 314 (713)
++..+...|...|++++|...|+.+.+.. +.+..++..+...|...|++++|.+.|+++...+..| +...+..+...+
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence 33333334444444444444444333332 2233344444444444444444444444443311122 223333333444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 005127 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (713)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 394 (713)
...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+.+.+.. +.+...+..+...|...|+.++|.
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHH
Confidence 44444444444444443332 1223444444444444444444444444444321 223334444444444444444444
Q ss_pred HHHHHHHH
Q 005127 395 EVLSDMKS 402 (713)
Q Consensus 395 ~l~~~m~~ 402 (713)
+.++++.+
T Consensus 230 ~~~~~~~~ 237 (252)
T 2ho1_A 230 SYGLQLKR 237 (252)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=5e-11 Score=117.41 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (713)
...|..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666667777777777777777766653 3456666667777777777777777777766653 2255666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCH
Q 005127 172 CAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~ 250 (713)
|...|++++|..+|+++...+..| +...+..+...+...|++++|.+.|.+..... +.+..++..+...|...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCH
Confidence 777777777777777666522233 34455566666666666666666666655421 22345556666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 251 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
++|...|+.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666665543 344555666666666666666666666666554
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=5.9e-11 Score=114.25 Aligned_cols=164 Identities=9% Similarity=-0.070 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDMTKKGVIPD-EVFLSALIDF 313 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~ 313 (713)
++..+...|...|++++|...|+.+.+.. +.+..++..+...|... |++++|...|+++.+.+..|+ ...+..+..+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 33333344444444444444444333322 22333444444444444 444444444444443111111 2333344444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 005127 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 393 (713)
+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+.....+...+..+...+...|+.++|
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 444444444444444443332 1223444444444444444444444444443321002333444444444444444444
Q ss_pred HHHHHHHH
Q 005127 394 MEVLSDMK 401 (713)
Q Consensus 394 ~~l~~~m~ 401 (713)
...++.+.
T Consensus 202 ~~~~~~~~ 209 (225)
T 2vq2_A 202 YEYEAQLQ 209 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=7.4e-11 Score=113.55 Aligned_cols=94 Identities=7% Similarity=-0.068 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (713)
.|..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 33344444444444444444444443332 2223334444444444444444444444433322 113333333333344
Q ss_pred Hc-CCHHHHHHHHHHHH
Q 005127 174 KA-GQVAKAFGAYGIMR 189 (713)
Q Consensus 174 ~~-g~~~~A~~l~~~m~ 189 (713)
.. |++++|...|+++.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKAL 104 (225)
T ss_dssp TTTCCHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 44 44444444444333
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=4.3e-10 Score=112.34 Aligned_cols=220 Identities=11% Similarity=-0.004 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 005127 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (713)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~ 238 (713)
.++..+...|...|++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|.+.... .+..++.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----NYSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----CCHHHHH
Confidence 334444444444444444444444444321 23334444444444 44444444444444332 1333444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 239 ALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (713)
Q Consensus 239 ~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 310 (713)
.+...|.. .+++++|...|+...+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 44444444 444444444444444432 33444444444444 445555555555444433 23334444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005127 311 IDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (713)
Q Consensus 311 i~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 382 (713)
...|.. .+++++|...++...+.+ +...+..+..+|.+ .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444 445555555555444432 23444444445555 555555555555544432 2344444444
Q ss_pred HHHh----CCChhHHHHHHHHHHH
Q 005127 383 ALCD----GDQLPKTMEVLSDMKS 402 (713)
Q Consensus 383 ~~~~----~g~~~~A~~l~~~m~~ 402 (713)
.|.+ .+++++|++.|++..+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 4544 4555555555555444
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=1.1e-11 Score=123.83 Aligned_cols=245 Identities=11% Similarity=-0.061 Sum_probs=115.1
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005127 176 GQVAKAFGAYGIMRSKNVK---PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (713)
Q Consensus 176 g~~~~A~~l~~~m~~~g~~---pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~ 252 (713)
|++++|+..|+++.+.... .+..+|..+...+...|++++|.+.|.+.... .+.+..++..+...|...|++++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHccCHHH
Confidence 4455555555555443210 12334444455555555555555555554432 12234455555555555555555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 253 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
|...|+...+.. +.+..+|..+...|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 555555555443 2234555555555555666666666665555532 2222223333333445566666666655444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005127 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK---PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (713)
Q Consensus 333 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (713)
.. +++...+ .++..+...++.++|...++...+.... .+...|..+...|...|++++|+..|++..+. .|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 32 2222222 2444455555556666666555432100 01345555666666666666666666666553 3422
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 005127 410 ITYSILLVACERKDDVEVGLMLL 432 (713)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~ 432 (713)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 111233444455555554443
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=4.1e-10 Score=112.48 Aligned_cols=224 Identities=11% Similarity=-0.023 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHH
Q 005127 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEV 271 (713)
Q Consensus 196 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 271 (713)
+..++..+...|...|++++|.+.|.+... ..+..++..+...|.. .+++++|...|++..+.+ ++.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 567788888999999999999999999876 2345678888899999 999999999999998876 6789
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005127 272 YTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYS 343 (713)
Q Consensus 272 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 343 (713)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 9999999999 999999999999999875 67888889999999 999999999999999876 577888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 344 SLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (713)
Q Consensus 344 ~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (713)
.+...|.. .+++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ | ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHH
Confidence 88889988 99999999999999875 367888889999999 999999999999998864 2 6677778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCC
Q 005127 416 LVACER----KDDVEVGLMLLSQAKEDG 439 (713)
Q Consensus 416 l~a~~~----~g~~~~a~~~~~~m~~~g 439 (713)
...+.+ .+++++|...|++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 999999999999998865
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.42 E-value=2.6e-11 Score=120.87 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
..+...|...|++++|...|+...+.. +.+..+|..+...|...|++++|+..|++..
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 333344444444444444444433332 2223334444444444444444444444433
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=4.9e-12 Score=126.32 Aligned_cols=224 Identities=11% Similarity=-0.045 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (713)
..+|..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|.+.|++..+.. +.+..++..+...
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 3455666666666777777777777666653 3356666667777777777777777777766653 2245666666677
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 005127 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~ 251 (713)
|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+.+.... .+++...+ .++..+...++.+
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~ 194 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGW-NIVEFYLGNISEQ 194 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHH-HHHHHHTTSSCHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCcchHHH-HHHHHHHHhcCHH
Confidence 77777777777777766654 233333333444445556677777776555442 12222232 2455555666666
Q ss_pred HHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 252 RAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (713)
Q Consensus 252 ~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 327 (713)
+|...+....+.... .+..+|..+...|.+.|++++|...|++....... +. .....++...|++++|++.+
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 666666655443211 01345566666666666666666666666654321 21 12233444455555554443
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=1.5e-11 Score=120.30 Aligned_cols=203 Identities=13% Similarity=0.058 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (713)
.....|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345566667777777888888888888877653 4467777777788888888888888888877664 33667777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005127 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~ 249 (713)
..|...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..+...|.+.|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCC
Confidence 78888888888888888777653 345667777777777778888888877776653 12345666777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 250 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 299 (713)
+++|...|+.+.+.. +.+..++..+...|.+.|++++|...|+++.+..
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777777776654 3456677777777777777777777777776654
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=5.9e-11 Score=118.28 Aligned_cols=231 Identities=10% Similarity=-0.058 Sum_probs=115.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 005127 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQ 209 (713)
Q Consensus 132 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~ 209 (713)
.....+...|++++|.+.|++..+... .+..++..+...|...|++++|+..|++.......|+ ..+|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 344445555555555555555554421 1233455555555555555555555555554221111 2235555555555
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (713)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (713)
.|++++|.+.|++..... +.+..++..+...|...|++++|...|+...+.. +.+..+|..+...+...+++++|.
T Consensus 87 ~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 556666655555554421 2233455555566666666666666665555542 334455555552222333666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 005127 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQG-ISVG------IISYSSLMGACSNAKNWQKAL 359 (713)
Q Consensus 290 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~~~------~~~~~~li~~~~~~g~~~~A~ 359 (713)
..|++..+.... +...+..+..++...|+ .++|...++++.+.. -.|+ ..+|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666554322 34444555555555555 445555555444321 0111 134555555555666666666
Q ss_pred HHHHHHHhC
Q 005127 360 ELYEHMKSI 368 (713)
Q Consensus 360 ~l~~~m~~~ 368 (713)
+.|++..+.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666655543
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=9.6e-11 Score=122.61 Aligned_cols=230 Identities=10% Similarity=0.064 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
...|+.+...+...|++++|+..++.+++.. +-+..+|+.+..++...|+ +++|++.|++..+.. +-+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777777778888888888888887764 4456777778888888886 888888888877764 236777777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH-cCC
Q 005127 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQ 249 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~-~g~ 249 (713)
++.+.|++++|+..|+++.... +-+...|..+..++.+.|++++|++.|+++.... +.+...|+.+..++.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCc
Confidence 8888888888888888877653 4466777777777777788888888877776531 2345667777777777 455
Q ss_pred HHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 005127 250 VDRA-----REVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---- 318 (713)
Q Consensus 250 ~~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g---- 318 (713)
.++| ...|+...+.+ +.+...|+.+...+.+.| ++++|++.+.++ +.. ..+...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccc
Confidence 4555 36666666554 445566666666666666 466666666665 222 224455566666665543
Q ss_pred -----CHHHHHHHHHHH
Q 005127 319 -----KVEAAFEILQEA 330 (713)
Q Consensus 319 -----~~~~a~~~~~~m 330 (713)
..++|.++++.+
T Consensus 328 ~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 328 DNKEDILNKALELCEIL 344 (382)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 235566666665
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=2.2e-11 Score=119.02 Aligned_cols=94 Identities=12% Similarity=0.028 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|..
T Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 128 FYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAY 205 (243)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3333333444444444444444433322 1233344444444444455555555544444321 2234445555555555
Q ss_pred CCChhHHHHHHHHHHH
Q 005127 387 GDQLPKTMEVLSDMKS 402 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~ 402 (713)
.|++++|++.|+++.+
T Consensus 206 ~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 206 KENREKALEMLDKAID 221 (243)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHc
Confidence 5555555555555444
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=9.5e-11 Score=122.66 Aligned_cols=248 Identities=11% Similarity=0.031 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005127 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (713)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~li~ 205 (713)
..+|..+...+.+.|++++|++.|++.++.. +-+..+|+.+..++...|+ +++|+..|++..... +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567788888889999999999999998875 3367889999999999996 999999999998764 446788999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCC
Q 005127 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-TGD 284 (713)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~ 284 (713)
++...|++++|+..|+++.... +.+..+|..+..++.+.|++++|...|+.+.+.+ +.+...|+.+..+|.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999988641 3457788888889999999999999999998876 5578888888888888 666
Q ss_pred HHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 005127 285 WEFA-----CSVYDDMTKKGVIPDEVFLSALIDFAGHAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---- 353 (713)
Q Consensus 285 ~~~A-----~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---- 353 (713)
.++| +..|++....... +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 4778777776544 5667777777777777 577888877776 32 3445677778888887764
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCC-HHHHHHHHHHHH
Q 005127 354 -----NWQKALELYEHM-KSIKLKPT-VSTMNALITALC 385 (713)
Q Consensus 354 -----~~~~A~~l~~~m-~~~~~~p~-~~~~~~li~~~~ 385 (713)
.+++|.++|+++ .+. .|. ...|..+...+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 257788888887 443 333 345655555443
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.36 E-value=6e-11 Score=127.95 Aligned_cols=342 Identities=11% Similarity=-0.013 Sum_probs=232.3
Q ss_pred HHHHHHhhHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 005127 67 FFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141 (713)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g- 141 (713)
+.....+.|++++|+++|+... ..+..++..+...+...|+. ++|+..|++..+. +...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 4556677899999999998753 23444555566666777877 8999999988854 5556666776555555
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--
Q 005127 142 ----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV---AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-- 212 (713)
Q Consensus 142 ----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~-- 212 (713)
++++|.++|++..+.|.. + .+..|...|...+.. .++.+.+......| +...+..|...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 778999999999987633 3 677777777776543 34555666655555 34556667777777774
Q ss_pred --HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----C
Q 005127 213 --VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 283 (713)
Q Consensus 213 --~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g 283 (713)
.+.+..++..... ..|+ .+..|..+|.+.| +.++|...|+...+.+ .++...+..+...|... +
T Consensus 159 ~~~~~a~~~~~~a~~----~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALN----TTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTT----TCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHc----CCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 4455555555432 2344 8888889999999 9999999999999988 55666667777777665 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CH
Q 005127 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 355 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~ 355 (713)
++++|+..|++.. .| +...+..+... + ...++.++|...|.+..+.| +...+..|..+|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 43 44556666665 3 46899999999999999887 6778888888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 005127 356 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEV 427 (713)
Q Consensus 356 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 427 (713)
++|...|++.. .-+...+..|...|.. ..++++|++.|++..+.|. |+. ...|-..|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A--~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSA--DFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTH--HHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHH--HHHHHHHHHhCCCCCCCHHH
Confidence 99999999877 4577788888877776 3489999999999988764 333 3344444443 468999
Q ss_pred HHHHHHHHHHCCC
Q 005127 428 GLMLLSQAKEDGV 440 (713)
Q Consensus 428 a~~~~~~m~~~g~ 440 (713)
|..+|+...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999998874
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=1.1e-08 Score=114.39 Aligned_cols=416 Identities=8% Similarity=0.017 Sum_probs=268.6
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHH---HHHHHHHhhhCC-----CCCHHHH
Q 005127 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP-----NPTLSTF 95 (713)
Q Consensus 28 ~~~~~~~L~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~-----~~~~~~~ 95 (713)
+..+|..|+ +.+.++.|..+|+.+...- |....+....+..-.+.+. ++.+..+|+... +|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455565555 5789999999999999874 6666666666666677788 999999998643 2888889
Q ss_pred HHHHHHHHhCCCh--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHH---------HcCChhHHHHHHHHHHH
Q 005127 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KAD-CKLYTTLITTCA---------KSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 96 ~~li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~pd-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 155 (713)
...+....+.++. +...++|+..+. .|. .++ ...|...+.... ..++++.+.++|+....
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888766655543 334467776554 465 453 567777776543 23457788899998885
Q ss_pred CCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHh--CCC----C-----------C-----C---H
Q 005127 156 AGIEPNVHTYGALIDGCAK-------------AGQVAKAFGAYGIMRS--KNV----K-----------P-----D---R 197 (713)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~l~~~m~~--~g~----~-----------p-----d---~ 197 (713)
.....-..+|......-.. ..+++.|...+.++.. .++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 4222223344322211111 1233445555554321 111 1 1 0 1
Q ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCCH
Q 005127 198 VVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR-EVYKMIHKYNIKGTP 269 (713)
Q Consensus 198 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~-~~~~~m~~~~~~~~~ 269 (713)
..|...+.---..+ ..+.+..+|++.... ++-+...|...+..+...|+.++|. .+|+..... ++.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 33444444332222 123456678777653 2335667777777788888888886 999888764 35677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---------IPD------------EVFLSALIDFAGHAGKVEAAFEILQ 328 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~------------~~t~~~li~~~~~~g~~~~a~~~~~ 328 (713)
..|-..+...-+.|+++.|..+|+.+..... .|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7788888888889999999999998875310 132 2357777777778888999999999
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 005127 329 EAKNQ-GISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (713)
Q Consensus 329 ~m~~~-g~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 406 (713)
...+. + .....+|...+..-.++ ++.+.|.++|+...+. ++.+...|...+......|+.+.|..+|++.......
T Consensus 459 ~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 98876 2 12233343333333444 4589999999988765 3446677788888888889999999999988875322
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 407 P--NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (713)
Q Consensus 407 p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 453 (713)
+ ....|...+.--...|+.+.+..+.+++.+. .|+......+++-
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~r 583 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNK 583 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHH
Confidence 2 2456777788888889999999999988874 3443333444443
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.31 E-value=5.5e-11 Score=125.95 Aligned_cols=304 Identities=14% Similarity=0.013 Sum_probs=152.8
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP- 160 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~- 160 (713)
.....+......+...|++++|...|+.+.+.. +.+ ..++..+...|...|++++|...|++.... +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344555566666777777777777777777653 223 245666777777777777777777765432 1111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHH
Q 005127 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDR 215 (713)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~~~~li~~~~~~g~--------------------~~~ 215 (713)
...++..+...|...|++++|+..|++...... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 234566666777777777777777766653210 011 2345555566666666 555
Q ss_pred HHHHHHHhhhCCC--CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 216 AFDVLAEMNAEVH--PVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (713)
Q Consensus 216 A~~~~~~m~~~~~--~~~p-d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (713)
|.+.+.+...... +..+ ...++..+...|...|++++|...|+...+...
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------------------- 218 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--------------------------- 218 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH---------------------------
Confidence 5555544322100 0000 122334444444444555555444444332100
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 293 DDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 293 ~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
..+..+ ...++..+...|...|++++|...+.+..+. +..+ ...++..+...|.+.|++++|...|++..
T Consensus 219 ----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 219 ----EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp ----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 000000 0123444445555555555555555544322 1000 13455556666666666666666665554
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 005127 367 SIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDV 425 (713)
Q Consensus 367 ~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~ 425 (713)
+..- .++ ..++..+...|...|++++|++.|++..+. +..+ ...++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 3100 011 345556666666666666666666664431 2111 133455555555555554
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.29 E-value=8.1e-11 Score=124.62 Aligned_cols=282 Identities=15% Similarity=0.036 Sum_probs=178.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC
Q 005127 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP 195 (713)
Q Consensus 124 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p 195 (713)
......+......+...|++++|...|++..+.... + ..+|..+...|...|++++|...|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 344556666677777778888888888877766322 3 245667777777777877777777765432 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 005127 196 -DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (713)
Q Consensus 196 -d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 274 (713)
...++..+...|...|++++|...+.+....... .++. .....++..
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~-------------------------------~~~~~~~~~ 132 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDK-------------------------------VGEARALYN 132 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccc-------------------------------cchHHHHHH
Confidence 1334555566666666666666666655431000 0010 000123444
Q ss_pred HHHHHHhcCC--------------------HHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 275 AINCCSQTGD--------------------WEFACSVYDDMTK----KGVIP-DEVFLSALIDFAGHAGKVEAAFEILQE 329 (713)
Q Consensus 275 li~~~~~~g~--------------------~~~A~~l~~~m~~----~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~ 329 (713)
+...|...|+ +++|...+.+... .+..| ...++..+...|...|++++|...+.+
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444 5555555544322 11111 134566677777778888888887777
Q ss_pred HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChhHHHHHHHH
Q 005127 330 AKNQ----GIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSD 399 (713)
Q Consensus 330 m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (713)
..+. +.. ....++..+...|...|++++|...|++..+... .++ ..++..+...|...|++++|++.|++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 6543 111 1134788899999999999999999998764210 112 56788899999999999999999998
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 400 MKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 400 m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
..+. +-.+ ...++..+..++...|++++|...+++..+.
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7652 1111 1457778889999999999999999987753
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=6.2e-10 Score=103.74 Aligned_cols=165 Identities=16% Similarity=0.050 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
..+|..+...|.+.|++++|...|++..+.+ +.+..+|..+...|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3445555555555555555555555555443 334455555555555555555555555555444332 33444444445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 005127 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 393 (713)
+...++++.|...+....+.. +.+..++..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555544432 2334445555555555555555555555554432 22344555555555555555555
Q ss_pred HHHHHHHHH
Q 005127 394 MEVLSDMKS 402 (713)
Q Consensus 394 ~~l~~~m~~ 402 (713)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.29 E-value=1.1e-10 Score=124.01 Aligned_cols=277 Identities=15% Similarity=0.021 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----N-VKPDRVV 199 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~pd~~~ 199 (713)
.+..+...+...|++++|...|+++.+.... +. .+|..+...|...|++++|+..|++.... + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445555666677777777777776665321 22 35666666666677777777776666542 0 0111233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005127 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (713)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 279 (713)
+..+...|...|++++|...+.+........ . +.+....++..+...|
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~-------------------------------~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQL-G-------------------------------DRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-T-------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-h-------------------------------chHHHHHHHHHHHHHH
Confidence 4444455555555555555555443210000 0 0011123445555555
Q ss_pred HhcCC-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 005127 280 SQTGD-----------------WEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-- 335 (713)
Q Consensus 280 ~~~g~-----------------~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-- 335 (713)
...|+ +++|+..+++..+. +..+ ...++..+...|...|++++|...+.+..+...
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 55555555554321 1111 123566666677777777777777776654310
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----
Q 005127 336 ---SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KP----TVSTMNALITALCDGDQLPKTMEVLSDMKSL---- 403 (713)
Q Consensus 336 ---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 403 (713)
.....++..+...|...|++++|...|++..+... .. ...++..+...|...|++++|++.|++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01123677888888899999999988887764210 01 1467788888999999999999999887652
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 404 GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 404 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
+-.+ ...++..+..++...|++++|...|++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 1346777888999999999999999988763
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=5.2e-09 Score=106.53 Aligned_cols=217 Identities=9% Similarity=0.106 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005127 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKV-------DAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
++|..+|++.++.. +.+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666542 4455566666655542 3554 6666666666652112244566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH-HcCCHH
Q 005127 175 AGQVAKAFGAYGIMRSKNVKPD-RV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQVD 251 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~g~~pd-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~-~~g~~~ 251 (713)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|.++|++..... +++...|........ ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCHH
Confidence 66666666666666653 232 22 55556666666666666666666655421 112222222222211 135555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIP--DEVFLSALIDFAGHAGKVEAAFEILQ 328 (713)
Q Consensus 252 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~li~~~~~~g~~~~a~~~~~ 328 (713)
+|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++.
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555444432 2234445555555555555555555555544431 122 23344444444444444444444444
Q ss_pred HHHH
Q 005127 329 EAKN 332 (713)
Q Consensus 329 ~m~~ 332 (713)
++.+
T Consensus 266 ~a~~ 269 (308)
T 2ond_A 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.27 E-value=6.7e-11 Score=125.85 Aligned_cols=277 Identities=14% Similarity=0.059 Sum_probs=162.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHT 164 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~ 164 (713)
.+..+...+...|++++|...|+.+.+.. +.+. .++..+...|...|++++|.+.|++..+. +. .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 44456677888999999999999998874 2233 47888889999999999999999887653 11 223467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 005127 165 YGALIDGCAKAGQVAKAFGAYGIMRSK----N-VKPDRVVFNALITACGQSGA-----------------VDRAFDVLAE 222 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~pd~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 222 (713)
+..+...|...|++++|...|++.... + ......++..+...|...|+ +++|.+.+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888889999999999999999887643 1 11123466677777888888 7777776665
Q ss_pred hhhCCC--CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 223 MNAEVH--PV-DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDD 294 (713)
Q Consensus 223 m~~~~~--~~-~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (713)
...... +. .....++..+...|...|++++|...|++..+.... .+ ..++..+...|...|++++|...|++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 432100 00 011234455555566666666666665554332100 00 12344444445555555555555544
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 005127 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSI----K 369 (713)
Q Consensus 295 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~ 369 (713)
...... +.+. .....++..+...|...|++++|...|++..+. +
T Consensus 289 al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 289 TLALAV-------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 332100 0000 011334555555556666666666655554431 0
Q ss_pred C-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 370 L-KPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 370 ~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
. .....++..+...|...|++++|.+.|++..+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0 00123555666666666777777666666654
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=9.9e-11 Score=120.05 Aligned_cols=62 Identities=8% Similarity=-0.084 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 376 TMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
++..+...|...|++++|.+.+++..+. +-.+ ...++..+..++...|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4444555555555555555555554321 1000 122444555556666666666666655554
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=3.9e-09 Score=107.46 Aligned_cols=164 Identities=9% Similarity=0.044 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 314 (713)
.|..++..+.+.|++++|..+|+...+.. +.+.. +|..++..+.+.|++++|..+|++..+.... +...|.......
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~ 178 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34444444444444444444444444422 11122 4555555555555555555555555443321 222232222221
Q ss_pred H-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhCCCh
Q 005127 315 G-HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKP--TVSTMNALITALCDGDQL 390 (713)
Q Consensus 315 ~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~ 390 (713)
. ..|+.++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 1 2466666666666665542 2345666666666666666666666666666542 233 345666666666666777
Q ss_pred hHHHHHHHHHHH
Q 005127 391 PKTMEVLSDMKS 402 (713)
Q Consensus 391 ~~A~~l~~~m~~ 402 (713)
++|..+++++.+
T Consensus 258 ~~a~~~~~~a~~ 269 (308)
T 2ond_A 258 ASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776666665
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.25 E-value=2.2e-10 Score=117.38 Aligned_cols=276 Identities=15% Similarity=0.055 Sum_probs=146.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCC-CCHHHH
Q 005127 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIE-PNVHTY 165 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~ 165 (713)
+......+...|++++|...|+.+.+.. +.+ ..++..+...|...|++++|.+.+++..+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444556777788888888888877763 223 356777777888888888888887775432 111 124466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 005127 166 GALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRAFDVL 220 (713)
Q Consensus 166 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 220 (713)
..+...|...|++++|...|.+...... .++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777777888888888887777653210 112 2355566666666666 66666665
Q ss_pred HHhhhCCC--CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 221 AEMNAEVH--PV-DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 221 ~~m~~~~~--~~-~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
.+...... +. .....++..+...|...|++++|...++...+... .
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------------------------------~ 215 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-------------------------------E 215 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------------------------------H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------------------------h
Confidence 54432100 00 00122344444555555555555555544432100 0
Q ss_pred CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 005127 298 KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI--- 368 (713)
Q Consensus 298 ~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 368 (713)
.+. .....++..+...+...|++++|...+....+. +.. ....++..+...|...|++++|...+++..+.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 000 001123444444444555555555544444322 100 01344555566666666666666666555431
Q ss_pred -CCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 369 -KLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 369 -~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
+-. ....++..+...|...|++++|.+.|++..+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 000 0133555666666677777777777766654
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=1.7e-09 Score=100.79 Aligned_cols=171 Identities=17% Similarity=0.078 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (713)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 347 (713)
++.+|..+...|.+.|++++|+..|++..+.... +...+..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5688999999999999999999999999987654 78889999999999999999999999988775 446778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 005127 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVE 426 (713)
Q Consensus 348 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 426 (713)
.+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+. .| +..+|..+..++.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHH
Confidence 9999999999999999987653 456888999999999999999999999999875 45 6788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 005127 427 VGLMLLSQAKEDGVIPNLV 445 (713)
Q Consensus 427 ~a~~~~~~m~~~g~~p~~~ 445 (713)
+|...|++.++ +.|+..
T Consensus 159 ~A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHHh--CCccCH
Confidence 99999999987 456543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=6.3e-10 Score=117.23 Aligned_cols=163 Identities=9% Similarity=-0.054 Sum_probs=84.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----CCHHHHH
Q 005127 168 LIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----PDHITIG 238 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----pd~~~~~ 238 (713)
....+...|++++|+..|++.... +-.+ ...++..+...|...|++++|...+.+......... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777888888887777653 1111 234566677777777777777777766543211110 1123455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 005127 239 ALMKACANAGQVDRAREVYKMIHKYNIK-G----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV-IPDEVFLS 308 (713)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~ 308 (713)
.+...|...|++++|...|+...+.... + ...++..+...|...|++++|+..|++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5556666666666666666554432100 0 1124455555555555555555555554431 11 11233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 005127 309 ALIDFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m 330 (713)
.+...|.+.|++++|...+++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4444555555555555555443
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=8.9e-10 Score=116.10 Aligned_cols=232 Identities=9% Similarity=-0.061 Sum_probs=173.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C----CCCHHHHH
Q 005127 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYN--I----KGTPEVYT 273 (713)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p---d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~----~~~~~~~~ 273 (713)
....+...|++++|...|.+.......... ...++..+...|...|+++.|...+.+..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455678899999999999998653111221 24578888899999999999999998776531 1 11235788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 005127 274 IAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYS 343 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~ 343 (713)
.+...|...|++++|+..|++..+.... ++ ..++..+...|...|++++|...+.+..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999987643111 12 246788888999999999999999988762 33 44467889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005127 344 SLMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSIL 415 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~l 415 (713)
.+...|.+.|++++|...|++..+. +-+.....++.+...|...|+ .++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999987642 111112335667778888888 78888887766 23343 3456678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005127 416 LVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~m~~ 437 (713)
...|...|++++|...|++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999988765
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=5e-10 Score=121.50 Aligned_cols=215 Identities=11% Similarity=0.007 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005127 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 186 (713)
+++++..+....... +.+...+..+...|...|++ ++|.+.|++..+.. +.+..+|..+...|.+.|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666555432 34677777778888888888 88888888877764 2357788888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc--------CC
Q 005127 187 IMRSKNVKPDRVVFNALITACGQS---------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--------GQ 249 (713)
Q Consensus 187 ~m~~~g~~pd~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~--------g~ 249 (713)
+..+. .|+...+..+...|... |++++|.+.|++..... +.+...|..+..+|... |+
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 88776 46677777788888888 88888888888877531 33467788888888887 88
Q ss_pred HHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005127 250 VDRAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (713)
Q Consensus 250 ~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 326 (713)
+++|...|+...+.+ + .+...|..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|...
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888764 3 57888999999999999999999999998876544 667788888888999999999887
Q ss_pred HHHHH
Q 005127 327 LQEAK 331 (713)
Q Consensus 327 ~~~m~ 331 (713)
+..+.
T Consensus 315 ~~~~~ 319 (474)
T 4abn_A 315 KGKTK 319 (474)
T ss_dssp TTTCC
T ss_pred hcccc
Confidence 76653
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=6.2e-11 Score=120.46 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA-------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI 158 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 158 (713)
..++..+...+...|++++|..+++.+.+. ..+....++..+...|...|++++|...|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666666666666666666666542 11223345555556666666666666666555432 11
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHH
Q 005127 159 -EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (713)
Q Consensus 159 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~ 237 (713)
.....++..+...|...|++++|...|++..+.. .... +........++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~--~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVL--GKDHPDVAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHH--CTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhc--CCCChHHHHHH
Confidence 1123344444455555555555555554443210 0000 00001122344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 238 GALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
..+...|...|++++|..+|+...+. + .+....++..+...|...|++++|...|+++.+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555544432 1 111234555666666666666666666666554
No 72
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.20 E-value=1.4e-07 Score=105.49 Aligned_cols=393 Identities=12% Similarity=0.053 Sum_probs=266.5
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCC---hHHHHHH
Q 005127 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQV 114 (713)
Q Consensus 41 ~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~l 114 (713)
..+-+..|++.+..+ |.+...+..++..+.+.+.++.|..+|+.+. +.....|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 455677778888777 7788888888888888888999999988753 5677889999998888888 9999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------
Q 005127 115 LRLVQEAG-LKADCKLYTTLITTCAKSGKV--------DAMFEVFHEMVN-AGI-EP-NVHTYGALIDGCA--------- 173 (713)
Q Consensus 115 ~~~m~~~g-~~pd~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~--------- 173 (713)
|++.+... .+|++..|..-+....+.++. +...++|+.... .|. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998764 247888888887776665554 334578887654 466 55 4578888887543
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHH----------hcCCHHHHHHHHHHhhhCCCCCC---------
Q 005127 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNA---LITACG----------QSGAVDRAFDVLAEMNAEVHPVD--------- 231 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~---li~~~~----------~~g~~~~A~~~~~~m~~~~~~~~--------- 231 (713)
..++++.+..+|++.+......-..+|.. +-..+. ....++.|...+.++.....++.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 34467889999999985322112233322 222110 01223445555554322111111
Q ss_pred ------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-
Q 005127 232 ------P-----D---HITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC- 289 (713)
Q Consensus 232 ------p-----d---~~~~~~ll~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~- 289 (713)
| + ...|...+.---..+ ..+.+..+|+...... +.+...|-..+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 133444444322222 1234566788777653 567889999999999999999997
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHH
Q 005127 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMGA 348 (713)
Q Consensus 290 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------~~------------~~~~~~~li~~ 348 (713)
.+|++..... ..+...|...+....+.|+++.|.++|+.+..... .| ...+|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999988643 33566677788888899999999999998876410 12 23468888888
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhC-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 349 CSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (713)
Q Consensus 349 ~~~~g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (713)
..+.|.++.|+.+|....+. + ......|...+..-.+. ++.+.|.++|+...+. ++-+...+...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 88899999999999999875 2 12223343333333333 4589999999998875 3335666678888888889999
Q ss_pred HHHHHHHHHHHCC
Q 005127 427 VGLMLLSQAKEDG 439 (713)
Q Consensus 427 ~a~~~~~~m~~~g 439 (713)
.|+.+|++..+..
T Consensus 522 ~AR~lferal~~~ 534 (679)
T 4e6h_A 522 QVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988753
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=6.8e-11 Score=120.15 Aligned_cols=169 Identities=15% Similarity=0.073 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCC
Q 005127 164 TYGALIDGCAKAGQVAKAFGAYGIMRSK-------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----HPVD 231 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~ 231 (713)
++..+...|...|++++|..+|+++.+. ..+....++..+...|...|++++|...+.+..... ....
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444444444444444444331 111122334444444555555555555444443210 0011
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 005127 232 PDHITIGALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK------ 298 (713)
Q Consensus 232 pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 298 (713)
....++..+...|...|++++|...|+...+. + .+....++..+...|...|++++|+..|+++...
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 22345555666666666666666666655442 1 1112345667777777777777777777776553
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 299 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 299 g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
+..| ...++..+...|...|++++|...+.++.+
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 223455566666666666666666666554
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=1e-09 Score=119.02 Aligned_cols=217 Identities=10% Similarity=-0.028 Sum_probs=189.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (713)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 220 (713)
.++++.+.+++..... +.+...+..+...|...|++ ++|+..|++..+.. +.+...|..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4577788888776553 34788999999999999999 99999999998764 445889999999999999999999999
Q ss_pred HHhhhCCCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------C
Q 005127 221 AEMNAEVHPVDPDHITIGALMKACANA---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT--------G 283 (713)
Q Consensus 221 ~~m~~~~~~~~pd~~~~~~ll~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g 283 (713)
++.... .|+..++..+...|... |++++|...|++..+.. +.+...|..+..+|... |
T Consensus 161 ~~al~~----~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALTH----CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHTT----CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhh----CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 998854 57778899999999999 99999999999998876 56789999999999998 9
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005127 284 DWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 361 (713)
++++|+..|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999886431 278899999999999999999999999998875 44677899999999999999999998
Q ss_pred HHHHH
Q 005127 362 YEHMK 366 (713)
Q Consensus 362 ~~~m~ 366 (713)
+..+.
T Consensus 315 ~~~~~ 319 (474)
T 4abn_A 315 KGKTK 319 (474)
T ss_dssp TTTCC
T ss_pred hcccc
Confidence 87765
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=2.8e-08 Score=103.96 Aligned_cols=232 Identities=12% Similarity=0.051 Sum_probs=124.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHH
Q 005127 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV----HTYGALI 169 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li 169 (713)
...+...|++++|...++.........+.. +++.+...+...|++++|.+.+++...... ..+. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556777888888777776654222222 455666677777888888877777654210 1121 2345566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC--CHHHHHHH
Q 005127 170 DGCAKAGQVAKAFGAYGIMRSK----NVK--PD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGAL 240 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~~~----g~~--pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p--d~~~~~~l 240 (713)
..+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+.+.........+ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6777778888887777766532 211 21 234455666677777777777777765542111111 12345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 005127 241 MKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT-----IAINCCSQTGDWEFACSVYDDMTKKGVIPD---EVFLSALI 311 (713)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li 311 (713)
...+...|++++|...++......-.+ ....+. ..+..+...|++++|...+++.......+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 666666777777777666554321111 101111 122335566666666666665543321110 12333444
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 005127 312 DFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m 330 (713)
..+...|++++|...++..
T Consensus 261 ~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 4555555555555555444
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.12 E-value=3e-08 Score=103.78 Aligned_cols=265 Identities=11% Similarity=-0.042 Sum_probs=144.5
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHH
Q 005127 172 CAKAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKA 243 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~pd~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~~~~~ll~~ 243 (713)
+...|++++|...+++........+.. +++.+...+...|++++|.+.+.+....... .++ ..++..+...
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHH
Confidence 334455555555555544332111111 2333444445555555555555544321000 011 1223445555
Q ss_pred HHHcCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHH
Q 005127 244 CANAGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----PDEVFLSALID 312 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~li~ 312 (713)
+...|++++|...++...+. +.. | ...++..+...|...|++++|...+++....... ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66666666666666554332 111 1 2234555666667777777777777766543211 12345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHH
Q 005127 313 FAGHAGKVEAAFEILQEAKNQGISV--GIISYS----SLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITA 383 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~li~~ 383 (713)
.+...|++++|...+++.......+ ...... ..+..+...|++++|...+++..+....+ ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 7777778887777777765431111 111111 23344667888888888887776432111 12346667778
Q ss_pred HHhCCChhHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 384 LCDGDQLPKTMEVLSDMKS----LGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
+...|++++|...+++... .|..++. .++..+..++...|+.++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888888888887653 2222222 2455566778888999998888877764
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.09 E-value=1e-08 Score=94.80 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (713)
.+..+...|.+.|++++|...|++..+.. +.+...|..+...|...|++++|.+.+++
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333333444444444444444333221 12233333344444444444444444433
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.08 E-value=3.4e-08 Score=103.73 Aligned_cols=229 Identities=11% Similarity=-0.060 Sum_probs=155.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----CCHHHHH
Q 005127 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYN--IK----GTPEVYT 273 (713)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~----~~~~~~~ 273 (713)
...+...|++++|...|.+........ +| ..++..+...|...|+++.|...+....+.. .. ....+++
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344566788888888887765431111 22 3456667777888888888888777665421 11 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005127 274 IAINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISYS 343 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~ 343 (713)
.+...|...|++++|...|.+..+. +..+ ...++..+...|...|++++|...+.+..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888888888888888876542 1111 124567777888888999999988888776 33 33367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005127 344 SLMGACSNAKNWQKALELYEHMKSIK----LKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSIL 415 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~l 415 (713)
.+...|.+.|++++|...+++..+.. -+.....++.+...|...++ ..+|+..+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88889999999999999998876531 11223455666666777777 77777777762 22333 3455667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005127 416 LVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~m~~ 437 (713)
...|...|++++|...|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999887764
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=1.8e-08 Score=105.88 Aligned_cols=231 Identities=10% Similarity=0.003 Sum_probs=164.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CC-CHHHHH
Q 005127 168 LIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV---DP-DHITIG 238 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~p-d~~~~~ 238 (713)
....+...|++++|+..|++...... .+| ..++..+...|...|+++.|...+.+........ .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456678888999888888765411 122 3467777888888899888888887765421111 11 245677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005127 239 ALMKACANAGQVDRAREVYKMIHKY----NIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLS 308 (713)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~ 308 (713)
.+...|...|++++|...|+...+. +-. ....+++.+...|...|++++|+..|++... .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7888889999999999988876553 111 1235678888899999999999999998876 4333 366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 005127 309 ALIDFAGHAGKVEAAFEILQEAKNQG----ISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNAL 380 (713)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~p~-~~~~~~l 380 (713)
.+...|.+.|++++|...+++..+.. -+.....+..+...|...++ +.+|...++... ..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHH
Confidence 88889999999999999999887642 22234456677777778888 777877777632 2222 3456678
Q ss_pred HHHHHhCCChhHHHHHHHHHHH
Q 005127 381 ITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~ 402 (713)
...|...|++++|.+.|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999988764
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.06 E-value=2.3e-08 Score=92.43 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005127 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (713)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 278 (713)
.|..+...+...|++++|.+.++++... .+.+..++..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA---DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT---TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3444455555555566665555554432 12234455555555666666666666666555543 3345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (713)
Q Consensus 279 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 358 (713)
|...|++++|...|+++...... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666554322 45556666666666666666666666665553 33456666666777777777777
Q ss_pred HHHHHHHHh
Q 005127 359 LELYEHMKS 367 (713)
Q Consensus 359 ~~l~~~m~~ 367 (713)
...++...+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766553
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.00 E-value=2e-08 Score=113.48 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
..+++.|..+|.+.|++++|.+.|++..+.. +.+..+|+.+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4566777777777777777777777776654 445677777777777777777777777777765433 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 005127 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 393 (713)
|...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|.+.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777776654 3356677777777888888888888887776652 23466777777788888888877
Q ss_pred HHHHHHHHH
Q 005127 394 MEVLSDMKS 402 (713)
Q Consensus 394 ~~l~~~m~~ 402 (713)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776643
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.97 E-value=1.9e-08 Score=113.69 Aligned_cols=165 Identities=16% Similarity=0.093 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (713)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 347 (713)
+..+|+.+...|.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|+..|++..+.. +-+...|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5678999999999999999999999999987554 67899999999999999999999999998875 446889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 005127 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVE 426 (713)
Q Consensus 348 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 426 (713)
+|.+.|++++|.+.|++..+.. +-+...|+.+...|.+.|++++|++.|++..+. .| +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999988763 345789999999999999999999999999884 56 5678999999999999999
Q ss_pred HHHHHHHHHHH
Q 005127 427 VGLMLLSQAKE 437 (713)
Q Consensus 427 ~a~~~~~~m~~ 437 (713)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.96 E-value=7.9e-08 Score=92.78 Aligned_cols=190 Identities=16% Similarity=0.084 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 315 (713)
.+......+.+.|++++|...|+...+...+++...+..+..++...|++++|+..|++..+.... +...+..+..+|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHH
Confidence 333444444444444444444444444332233344444444444444444444444444443222 3334444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 005127 316 HAGKVEAAFEILQEAKNQGISVGI-------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALC 385 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~ 385 (713)
..|++++|...++...+.. +.+. .+|..+...+.+.|++++|...|++..+. .|+ ...|..+...|.
T Consensus 88 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHH
Confidence 4455555544444444432 1122 23444445555555555665555555543 233 334444444443
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
..| ...++++...+ ..+...|.... ....+.+++|+..+++..+
T Consensus 165 ~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 165 NNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 322 22333333321 12233333222 2223445666666666555
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.94 E-value=1e-07 Score=92.05 Aligned_cols=195 Identities=9% Similarity=0.003 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (713)
.|+..|......+...|++++|...|+...+...+++...+..+..++...|++++|.+.|++..+... .+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 456677777777777788888888887777765336666666677777777888888888777776542 2456677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC---HHHHHH
Q 005127 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGA 239 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~~~~~ 239 (713)
..|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|.+.|.+.... .|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----SCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----CCCcccHHHHHH
Confidence 77777778888877777777652 2233 34556666666777777777777776542 343 344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
+..+|...| ..+++.+...+ ..+...|.... ....+.+++|+..|++..+.
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 555554333 23334433332 22233333222 12234455566666655554
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=1.1e-08 Score=101.77 Aligned_cols=158 Identities=10% Similarity=0.057 Sum_probs=85.7
Q ss_pred HcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHH
Q 005127 139 KSGKVDAMFEVFHEMVNA-------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NV-KPDRVVFNALI 204 (713)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~-~pd~~~~~~li 204 (713)
..|++++|...|++..+. ..+....++..+...|...|++++|+..|++.... +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456667776666665541 11223456777777777777888887777776543 11 11234566666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCC-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C-CCCCHHHH
Q 005127 205 TACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVY 272 (713)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~-----~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~ 272 (713)
..|...|++++|.+.|.+..... ...+....++..+...|...|++++|...|+...+. . .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 66777777777777776665420 000112344555555555566666666555555443 0 01122344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 273 TIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
..+...|...|++++|...|++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555555555555555544
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.91 E-value=1.2e-08 Score=101.73 Aligned_cols=132 Identities=14% Similarity=0.084 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC-
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEA------GLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI- 158 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~- 158 (713)
.++..+...+...|++++|+..++.+.+. +-.| ...++..+...|...|++++|.+.|++..+. ..
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555555555566666666555555433 1111 2334555555555555555555555555432 00
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005127 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (713)
+....++..+...|...|++++|...|++.... +-.| ...++..+...|...|++++|.+.|++..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112334445555555555555555555554432 0011 12334444444445555555555554443
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=1.9e-07 Score=80.91 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
|..+...+...|++++|..+|+++.+.... +...+..+...+...|++++|...+..+.+.+ +.+...+..+...|..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 344444455555555555555554443221 33444444444445555555555555444432 2234444445555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.|+++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555544332 22344455555555555555555555555443
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.79 E-value=1.6e-07 Score=94.56 Aligned_cols=62 Identities=6% Similarity=0.032 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
+++.+...|.+.|++++|...|++..+....... ..|..+..+|...|++++|+..|++..+
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555555555555555555555543211111 1344455555555555555555555543
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.78 E-value=3.3e-07 Score=79.32 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH
Q 005127 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (713)
Q Consensus 167 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~ 246 (713)
.+...|...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+..
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHH
Confidence 33334444444444444444433321 1223333334444444444444444444433210 1122333334444444
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 247 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
.|++++|...|+.+.+.. +.+..++..+...+.+.|++++|...|+++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444443332 2233344444444444444444444444443
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.76 E-value=6.9e-07 Score=88.74 Aligned_cols=247 Identities=11% Similarity=0.072 Sum_probs=142.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChH
Q 005127 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 109 (713)
....-..-.|++..|+.-...+ ..... ........+.+...|+.... ..+.|....+..+...+ ..+
T Consensus 18 f~ikn~fy~G~yq~~i~e~~~~---~~~~~-~~~~~~~~Rs~iAlg~~~~~-----~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 18 FNIKQNYYTGNFVQCLQEIEKF---SKVTD-NTLLFYKAKTLLALGQYQSQ-----DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHHHHTTTCHHHHTHHHHTS---SCCCC-HHHHHHHHHHHHHTTCCCCC-----CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHHHHhhHHHHHHHHHHhc---Cccch-HHHHHHHHHHHHHcCCCccC-----CCCCHHHHHHHHHHHHh-ccc---
Confidence 3444555679999888843322 21111 12222233444444443321 12234433433333322 222
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005127 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 188 (713)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566666666554 45566666777778888888888888887765543 125566777778888888888888888888
Q ss_pred HhCCCCC-----CHHHHHHHHHHHHh--cC--CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005127 189 RSKNVKP-----DRVVFNALITACGQ--SG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (713)
Q Consensus 189 ~~~g~~p-----d~~~~~~li~~~~~--~g--~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~ 259 (713)
.+. .| +..+...|..++.. .| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 665 45 24555555555322 23 778888888887543 34433334445577777888888877776
Q ss_pred HHhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 260 IHKYN---------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 260 m~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 299 (713)
+.+.. -+.++.+...+|......|+ +|.+++.++.+..
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 55421 13355566455555555565 6777777777654
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.74 E-value=2.7e-06 Score=84.45 Aligned_cols=183 Identities=16% Similarity=0.126 Sum_probs=92.5
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (713)
Q Consensus 216 A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (713)
|...|++.... + .++..++..+..++...|++++|++++......+- ..+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~--~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKD--K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTT--S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhc--C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555554432 1 23344444555666666666666666665544432 13445566666666666666666666666
Q ss_pred HHHCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 295 MTKKGVIP-----DEVFLSALIDFAG--HAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 295 m~~~g~~p-----~~~t~~~li~~~~--~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
|.+. .| +..+...+..++. ..| +..+|..+|+++.+.. |+..+...++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6554 23 2344444444422 223 5666666666665432 33222333333566666666666666654
Q ss_pred HhC-----C----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005127 366 KSI-----K----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (713)
Q Consensus 366 ~~~-----~----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (713)
.+. . -+.|..+.-.+|......|+ +|.++++++.+ ..|+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 431 0 02234444344444444444 56666666665 24544
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=1.2e-05 Score=86.97 Aligned_cols=102 Identities=11% Similarity=0.129 Sum_probs=60.4
Q ss_pred cCC-HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHhCCC-hHHHHH
Q 005127 38 QGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQ 113 (713)
Q Consensus 38 ~g~-~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~ 113 (713)
.|+ ++.|..+|+.+...- |. +..+.+..+|+... .|++..|...+....+.++ .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 453 666777777666532 22 45777777777643 3677788777776666553 345566
Q ss_pred HHHHHHHc-CCC-CCHHHHHHHHHHHH----HcCChhHHHHHHHHHHHC
Q 005127 114 VLRLVQEA-GLK-ADCKLYTTLITTCA----KSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 114 l~~~m~~~-g~~-pd~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~ 156 (713)
+|+..+.. |.. .+...|...+..+. ..++++.+.++|+.....
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 77766553 432 35566766666543 235677788888888764
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.74 E-value=2.6e-07 Score=93.06 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH----
Q 005127 340 ISYSSLMGACSNA-KNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT---- 409 (713)
Q Consensus 340 ~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---- 409 (713)
.+++.+...|... |++++|...|++..+... ..+ ..+|+.+...|.+.|++++|+..|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3566666777775 777777777776654210 001 345777778888888888888888887764322111
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 410 --ITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 410 --~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
.+|..+..++...|++++|...|++..+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1456666777778888888888877665
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.72 E-value=6.7e-07 Score=88.24 Aligned_cols=99 Identities=11% Similarity=0.013 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC-HHHH
Q 005127 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD-RVVF 200 (713)
Q Consensus 126 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd-~~~~ 200 (713)
+...+..+...+.+.|++++|...|+++.+.... + ..++..+..+|.+.|++++|+..|++..+... .|+ ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4555666666667777777777777777665311 2 45666666677777777777777777765421 111 3445
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHhhh
Q 005127 201 NALITACGQ--------SGAVDRAFDVLAEMNA 225 (713)
Q Consensus 201 ~~li~~~~~--------~g~~~~A~~~~~~m~~ 225 (713)
..+..++.. .|++++|...|+++..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 555566666 6667777777766654
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.68 E-value=5.2e-06 Score=83.21 Aligned_cols=225 Identities=8% Similarity=0.058 Sum_probs=146.7
Q ss_pred HHHHhcCCH-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhH--HHHHHHHHhhhCC---CCCHHHHHHHHHHH----
Q 005127 33 NRLIRQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVP---NPTLSTFNMLMSVC---- 102 (713)
Q Consensus 33 ~~L~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~li~~~---- 102 (713)
..+.+.|.+ ++|+++++.++..+ |........-..+....+ .+++++++++.+. +.+..+|+.-...+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 344455554 68999999888877 666666555566666666 7888888877643 44556676655544
Q ss_pred HhC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005127 103 ASS---KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (713)
Q Consensus 103 ~~~---g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (713)
... +++++++.+++.+.+.. +-+-.+|+.-.-.+.+.+.++ ++++.++++.+.. ..|-..|+.-...+.+.+.
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGG
T ss_pred HhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 444 67788888888887764 446667777777777777777 7888888887765 3377777766666666555
Q ss_pred ------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCH
Q 005127 178 ------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (713)
Q Consensus 178 ------~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~ 250 (713)
++++++.++++.... +-|...|+.+-..+.+.|+... +..+..++......-..+...+..+.++|.+.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 777777777777653 4567777777777766666433 33444444321100123456666677777777777
Q ss_pred HHHHHHHHHHHh
Q 005127 251 DRAREVYKMIHK 262 (713)
Q Consensus 251 ~~A~~~~~~m~~ 262 (713)
++|.++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777777664
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.68 E-value=8.4e-07 Score=84.24 Aligned_cols=73 Identities=11% Similarity=0.056 Sum_probs=30.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (713)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 384 (713)
+..+|.+.|++++|...|+...+.. +-+...+..+...|...|++++|...|++..+.. +.+...|..+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3333444444444444444444332 2233444444444444444444444444444331 12333444444443
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.67 E-value=9.2e-07 Score=87.24 Aligned_cols=102 Identities=9% Similarity=0.010 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CC-CHH
Q 005127 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EP-NVH 163 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~-~~~ 163 (713)
+.+...+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+... .| ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4456666667777788888888888888887753 223 56777788888888888888888888877532 11 245
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHhC
Q 005127 164 TYGALIDGCAK--------AGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 164 ~~~~li~~~~~--------~g~~~~A~~l~~~m~~~ 191 (713)
++..+..++.. .|++++|+..|++....
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 56677777777 88888888888888765
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.67 E-value=6e-07 Score=85.26 Aligned_cols=191 Identities=8% Similarity=-0.019 Sum_probs=128.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCC
Q 005127 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (713)
Q Consensus 28 ~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (713)
.+..-..+++.|++++|+..|++..+.+ |.+...+.... ... ........++.+..++.+.|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~--~~~-------------~~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTN--VDK-------------NSEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHH--SCT-------------TSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhh--hcc-------------hhhhhHHHHHHHHHHHHHCCC
Confidence 3444456779999999999999999876 55544332210 000 000112334557778888999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Q 005127 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAY 185 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~l~ 185 (713)
+++|...|+...+.. +.+...+..+..+|...|++++|...|++..+.. +.+..+|..+...|...|+ ...+...|
T Consensus 70 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 70 YDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999888875 4567888889999999999999999999988874 3367788888888766554 44556666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 005127 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (713)
Q Consensus 186 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~ 243 (713)
..... ..|....+..+..++...|++++|...|++... +.|+......+...
T Consensus 148 ~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~----l~P~~~~~~~l~~i 199 (208)
T 3urz_A 148 KKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL----RFPSTEAQKTLDKI 199 (208)
T ss_dssp C---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT----TSCCHHHHHHHHHH
T ss_pred HHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 65542 122233344455566778899999999998874 46777666665553
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.67 E-value=3.6e-07 Score=84.23 Aligned_cols=160 Identities=11% Similarity=0.150 Sum_probs=89.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHHHHH-HH
Q 005127 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSV-CA 103 (713)
Q Consensus 27 ~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~-~~ 103 (713)
..+..-..+.+.|++++|+..|++..+.. |.+...+..+..++...|++++|+..|+.+. .|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 34444556667888888888887777655 6666666666777777777777777777654 2233332222111 11
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 005127 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKAF 182 (713)
Q Consensus 104 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~ 182 (713)
..+....|...++...+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122233455555555442 2245555556666666666666666666655543221 2345555555666666666666
Q ss_pred HHHHHHH
Q 005127 183 GAYGIMR 189 (713)
Q Consensus 183 ~l~~~m~ 189 (713)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.64 E-value=5.3e-07 Score=102.23 Aligned_cols=170 Identities=8% Similarity=-0.035 Sum_probs=123.0
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHh
Q 005127 36 IRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (713)
...|++++|++.|++.. +.. |.+...+..+...+...|++++|+..|+... +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 57888888988888887 443 5666666667777777888888888887643 4567778888888888
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005127 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 184 (713)
.|++++|...|++..+.. +.+...+..+..+|.+.|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888887764 3356677778888888888888 88888877764 23667788888888888888888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 005127 185 YGIMRSKNVKPD-RVVFNALITACGQSGA 212 (713)
Q Consensus 185 ~~~m~~~g~~pd-~~~~~~li~~~~~~g~ 212 (713)
|++..+. .|+ ...+..+..++...+.
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 8877765 344 4556666666655443
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.62 E-value=4.2e-06 Score=79.63 Aligned_cols=173 Identities=14% Similarity=-0.022 Sum_probs=102.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 005127 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAYG 186 (713)
Q Consensus 111 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~l~~ 186 (713)
|++.|+...+.| +...+..|...|...+++++|.++|++..+.| +...+..|-..|.. + ++++|+.+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455555555543 55566666666666677777777777666653 45556666666655 5 6677777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHH----cCCHHHHHH
Q 005127 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACAN----AGQVDRARE 255 (713)
Q Consensus 187 ~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd---~~~~~~ll~~~~~----~g~~~~A~~ 255 (713)
+..+.| +...+..|...|.. .+++++|.+.|.+.... .++ ...+..|..+|.. .+++++|..
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 666554 45556666666655 56667777776665532 221 4555566666666 556666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 005127 256 VYKMIHKYNIKGTPEVYTIAINCCSQT-G-----DWEFACSVYDDMTKKG 299 (713)
Q Consensus 256 ~~~~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g 299 (713)
.|+...+. ..+...+..|...|... | ++++|...|+...+.|
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666554 12234555555555432 2 5666666666655554
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.61 E-value=1e-06 Score=88.31 Aligned_cols=161 Identities=11% Similarity=-0.001 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 005127 59 MDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT-TLI 134 (713)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~-~li 134 (713)
.....+..+...+...|++++|...|+.. .+.+...+..+...+.+.|++++|...++.+... .|+..... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 33333334444444455555555555443 1234445555555555555555555555554433 22322211 112
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCH
Q 005127 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PDRVVFNALITACGQSGAV 213 (713)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~~~~~li~~~~~~g~~ 213 (713)
..+...++.+.|.+.|++..... +.+...+..+...|...|++++|+..|.++.+.... .+...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 22334445555555555555442 224455555555555555555555555555544211 0134455555555555555
Q ss_pred HHHHHHHHH
Q 005127 214 DRAFDVLAE 222 (713)
Q Consensus 214 ~~A~~~~~~ 222 (713)
++|...|++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 555555544
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.55 E-value=6.5e-06 Score=78.30 Aligned_cols=176 Identities=11% Similarity=-0.033 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 005127 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG----AVDRAFDVL 220 (713)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~~A~~~~ 220 (713)
+|++.|++..+.| +...+..|...|...+++++|+..|++..+.| +...+..|-..|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777653 66777777777777888888888888877765 56666666666666 5 777777777
Q ss_pred HHhhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHH
Q 005127 221 AEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQ----TGDWEFACSV 291 (713)
Q Consensus 221 ~~m~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l 291 (713)
.+.... .+...+..|...|.. .+++++|...|+...+.+.. .++..+..|...|.. .+++++|+..
T Consensus 77 ~~A~~~-----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEA-----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHT-----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHC-----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 776542 244566666666665 66777777777776665421 114566666666666 5666777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 005127 292 YDDMTKKGVIPDEVFLSALIDFAGHA-G-----KVEAAFEILQEAKNQG 334 (713)
Q Consensus 292 ~~~m~~~g~~p~~~t~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 334 (713)
|++..+.+- +...+..|...|... | +.++|...|+...+.|
T Consensus 152 ~~~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 766665511 223444455555432 2 5666666666665555
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.55 E-value=6.5e-07 Score=101.49 Aligned_cols=155 Identities=14% Similarity=-0.004 Sum_probs=76.2
Q ss_pred HhcCCHHHHHHHHHHhhhC-----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 005127 208 GQSGAVDRAFDVLAEMNAE-----VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (713)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~-----~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 282 (713)
...|++++|++.+++.... ....+.+...+..+...|.+.|++++|...|+...+.+ +.+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 4556666666666665410 00112233445555555555566666665555555443 33445555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (713)
Q Consensus 283 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 362 (713)
|++++|+..|++..+.... +...+..+..+|.+.|++++ ...|++..+.+ +.+...+..+..+|.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555544322 33444444445555555555 55554444432 223344444444444455555554444
Q ss_pred HHHH
Q 005127 363 EHMK 366 (713)
Q Consensus 363 ~~m~ 366 (713)
++..
T Consensus 558 ~~al 561 (681)
T 2pzi_A 558 DEVP 561 (681)
T ss_dssp HTSC
T ss_pred Hhhc
Confidence 4443
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.53 E-value=8.3e-06 Score=78.34 Aligned_cols=204 Identities=8% Similarity=-0.036 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGA 167 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ 167 (713)
...+..+...+.+.|++++|...|+.+.+...... ...+..+..+|.+.|++++|...|+++.+....... .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 33444555566666777777777777666432111 245566666777777777777777776665322111 13333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH-HHHHHHHHHHHH
Q 005127 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACAN 246 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~~~~~ll~~~~~ 246 (713)
+..++.+.+.. .+ ..|..+...+...|+.++|...|+++... .|+. .++......
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~P~~~~a~~a~~~l--- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG----YPNSQYTTDATKRL--- 139 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT----CTTCTTHHHHHHHH---
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH----CcCChhHHHHHHHH---
Confidence 33333332210 00 01112223334456778888888877653 2332 222111100
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 005127 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAF 324 (713)
Q Consensus 247 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~ 324 (713)
+ .+...+. .....+...|.+.|++++|+..|+++.+...... ...+..+..+|.+.|+.++|.
T Consensus 140 -~------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 140 -V------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp -H------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -H------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 0 0000000 1123455667777888888888887776533211 245666777778888888888
Q ss_pred HHHHHHHHCC
Q 005127 325 EILQEAKNQG 334 (713)
Q Consensus 325 ~~~~~m~~~g 334 (713)
+.++.+...+
T Consensus 205 ~~~~~l~~~~ 214 (225)
T 2yhc_A 205 KVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhhC
Confidence 8887776654
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.53 E-value=2.1e-06 Score=86.06 Aligned_cols=166 Identities=10% Similarity=0.008 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005127 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (713)
Q Consensus 125 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 204 (713)
.+...+..+...+...|++++|...|++..+.. +-+...+..+...|.+.|++++|...|++.... .|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 344455566666667777777777777766653 225566666777777777777777777766554 34433322222
Q ss_pred -HHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhc
Q 005127 205 -TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQT 282 (713)
Q Consensus 205 -~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~ 282 (713)
..+.+.++.++|.+.+++.... -+.+...+..+...|...|++++|...|..+.+.+... +...+..++..|...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2345556666666666666543 13345566667777777777777777777776654211 255677777777777
Q ss_pred CCHHHHHHHHHHHH
Q 005127 283 GDWEFACSVYDDMT 296 (713)
Q Consensus 283 g~~~~A~~l~~~m~ 296 (713)
|+.++|...|++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 77777777666543
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.53 E-value=5.6e-05 Score=75.69 Aligned_cols=115 Identities=9% Similarity=0.004 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---CCH
Q 005127 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----AKA---GQV 178 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~ 178 (713)
.++|+.+++.++... +-+..+|+.--..+...+ +++++++.++.+..... .+..+|+.--..+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 345666666555543 223444555555555555 55566666655555432 2334444333333 233 445
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhh
Q 005127 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--RAFDVLAEMNA 225 (713)
Q Consensus 179 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~--~A~~~~~~m~~ 225 (713)
++++.+++++.+.. +-|..+|+.-.-.+.+.|.++ ++++.++++..
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 55555555555432 334444444444444444444 44555544443
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.53 E-value=1.1e-06 Score=80.91 Aligned_cols=160 Identities=12% Similarity=0.086 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 005127 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGH 316 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~ 316 (713)
..+...+.+.|++++|...|+...+.+ +.+...+..+...|...|++++|+..|++...... +...+...... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 344455666666666666666555443 34456666666667777777777777766554432 33222211111 111
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChhHHHH
Q 005127 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTME 395 (713)
Q Consensus 317 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 395 (713)
.+....|...++...+.. +.+...+..+...|...|++++|...|+++.+....+ +...+..+...|...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 112223455666655543 2345666666777777777777777777766543111 24466666677777777777777
Q ss_pred HHHHHH
Q 005127 396 VLSDMK 401 (713)
Q Consensus 396 l~~~m~ 401 (713)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.52 E-value=8.3e-06 Score=78.32 Aligned_cols=205 Identities=9% Similarity=-0.030 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCH-HHHHH
Q 005127 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-P-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PDR-VVFNA 202 (713)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~-~~~~~ 202 (713)
...+..+...+.+.|++++|...|+++.+.... | ....+..+..+|.+.|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 334455566666777777777777777664321 1 1245666667777777777777777777654211 111 12333
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 005127 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (713)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 282 (713)
+..++...+.. .+. .+..+...+...|++++|...|+.+.+.. +.+...+.+....
T Consensus 84 ~g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l---- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----
T ss_pred HHHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----
Confidence 33333322210 110 11122233445678888888888887764 2233333221110
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 005127 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKNWQKALE 360 (713)
Q Consensus 283 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~ 360 (713)
..+...+. .....+...|.+.|++++|...|+.+.+..... ....+..+..+|.+.|+.++|.+
T Consensus 140 ------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 140 ------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp ------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 00111110 112345677889999999999999998864221 13578889999999999999999
Q ss_pred HHHHHHhCC
Q 005127 361 LYEHMKSIK 369 (713)
Q Consensus 361 l~~~m~~~~ 369 (713)
.++.+...+
T Consensus 206 ~~~~l~~~~ 214 (225)
T 2yhc_A 206 VAKIIAANS 214 (225)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhC
Confidence 999988763
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.49 E-value=2.9e-06 Score=94.22 Aligned_cols=153 Identities=12% Similarity=-0.036 Sum_probs=86.9
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (713)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (713)
.|++++|.+.|++.... -+.+...+..+...|.+.|++++|...|++..+.+ +.+...|..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35667777777766542 12235566666677777777777777777766654 445666677777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 005127 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 366 (713)
Q Consensus 290 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~ 366 (713)
+.|++..+.... +...+..+..+|...|++++|.+.+++..+.. +.+...+..+...|... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 777776665432 45566666666666777777777766666553 23455666666666666 66666666666665
Q ss_pred hC
Q 005127 367 SI 368 (713)
Q Consensus 367 ~~ 368 (713)
+.
T Consensus 156 ~~ 157 (568)
T 2vsy_A 156 AQ 157 (568)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.49 E-value=1.1e-06 Score=78.44 Aligned_cols=142 Identities=8% Similarity=-0.061 Sum_probs=93.2
Q ss_pred HHHHHHhhHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 005127 67 FFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (713)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 143 (713)
++.+..+.|++++|+..|....+. +...+..+...|.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344556677888888887765432 23345566777788888888888888877764 44677777788888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005127 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNVKPDRVVFNALITACGQSG 211 (713)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~~g~~pd~~~~~~li~~~~~~g 211 (713)
++|...|++..+.. +-+..+|..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 88888888877764 22566777777777777777665554 46665542 334566665555555544
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.48 E-value=2.9e-06 Score=85.99 Aligned_cols=155 Identities=14% Similarity=0.026 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGII 340 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~ 340 (713)
+|+.+...|.+.|++++|+..|++....- -.|. ..++..+...|.. |++++|+..|++..+. +.. ....
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 45555556666666666666665543320 0111 2345555666666 7777777777665542 110 0135
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC------H
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN------T 409 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~ 409 (713)
+++.+...|.+.|++++|...|++..+. +..+. ...+..+...+...|++++|+..|++.. . .|+ .
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~ 233 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHH
Confidence 6777778888888888888888877642 11111 2256666677777788888888888876 3 332 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHH
Q 005127 410 ITYSILLVACERKDDVEVGLM 430 (713)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~ 430 (713)
.+...++.++ ..|+.+....
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHH
Confidence 2334444444 4566655544
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.48 E-value=2.5e-06 Score=86.50 Aligned_cols=230 Identities=11% Similarity=-0.020 Sum_probs=142.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 005127 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 116 (713)
..|++++|.+++++..+... .. ++...+++++|...|.. ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 45788899999988776431 10 01113456666665543 3556777788888888877
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005127 117 LVQEAGL---KA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI---EPN--VHTYGALIDGCAKAGQVAKAFGAYG 186 (713)
Q Consensus 117 ~m~~~g~---~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~li~~~~~~g~~~~A~~l~~ 186 (713)
+..+... .+ -..+|+.+..+|...|++++|...|++..+.-. .+. ..+++.+...|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 6654311 11 134677788888888888888888877654310 111 3467777777877 88888888888
Q ss_pred HHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005127 187 IMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH--PVDPD-HITIGALMKACANAGQVDRAREVYK 258 (713)
Q Consensus 187 ~m~~~----g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (713)
+.... |-.+ ...+++.+...|.+.|++++|+..|++...... +..+. ...+..+..++...|++++|...|+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76542 1100 135677778888888888888888877654211 11222 2356666677777888888888888
Q ss_pred HHHhcCCC--CC--HHHHHHHHHHHHhcCCHHHHHHH
Q 005127 259 MIHKYNIK--GT--PEVYTIAINCCSQTGDWEFACSV 291 (713)
Q Consensus 259 ~m~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~l 291 (713)
... .... .. ......++.++ ..|+.+.+..+
T Consensus 220 ~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 220 ESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 776 3211 11 12344555555 56776666553
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.43 E-value=1.3e-06 Score=78.13 Aligned_cols=110 Identities=9% Similarity=0.022 Sum_probs=54.1
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 209 QSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
..|++++|+..+...... .|+ ...+..+...|.+.|++++|...|+...+.+ +.+..+|..+..+|.+.|++++
T Consensus 9 ~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 344555555555544321 222 2233444555555555555555555555543 3345555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (713)
Q Consensus 288 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 324 (713)
|+..|++..+.... +...+..+...|.+.|+.++|.
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHH
Confidence 55555555544322 3444555555555555544433
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.43 E-value=4.8e-06 Score=92.44 Aligned_cols=154 Identities=11% Similarity=0.022 Sum_probs=110.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005127 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~ 254 (713)
.|++++|+..|++..+.. +.+...|..+...+.+.|++++|.+.|++.... .+.+...+..+..+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 477888999998887663 345778888888888999999999999888753 1334677888888889999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 005127 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA---GKVEAAFEILQEAK 331 (713)
Q Consensus 255 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~~~~~~m~ 331 (713)
..|++..+.+ +.+...|..+...|.+.|++++|.+.|++..+.... +...+..+..++... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9998888765 556788888889999999999999999988876543 567788888888888 89999999998887
Q ss_pred HCC
Q 005127 332 NQG 334 (713)
Q Consensus 332 ~~g 334 (713)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 765
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.41 E-value=0.00027 Score=76.31 Aligned_cols=354 Identities=8% Similarity=-0.019 Sum_probs=185.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHH-HHHHHHHhhhC------CCCCHHHHHHHHHHHH----hC
Q 005127 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFFKLV------PNPTLSTFNMLMSVCA----SS 105 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~------~~~~~~~~~~li~~~~----~~ 105 (713)
-.|+++.|..+|+.....- | +..+....+....+.+. .+.....|+.. ...+...|...+..+. ..
T Consensus 26 P~~~~e~~~~iferal~~~--p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 26 MSKDYRSLESLFGRCLKKS--Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp HTTCHHHHHHHHHHHSTTC--C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCCCHHHHHHHHHHHhccC--C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 3589999999999998743 5 33344445555544432 23344455532 1346788888887654 24
Q ss_pred CChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005127 106 KDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (713)
++.+.+..+|++.+.. ++. ...|......- +......+.++..+.. ..+..|..
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---------------------~~y~~ar~ 158 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGSLSELWKDFENFE-LELNKITGKKIVGDTL---------------------PIFQSSFQ 158 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------HHHHHHHH
Confidence 5788899999999873 222 12222221111 1111112222221111 11222222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005127 184 AYGIMRSKNVKPDRVVFNALITACGQSG--A-----VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (713)
Q Consensus 184 l~~~m~~~g~~pd~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~ 256 (713)
+++.+...--..+...|...+.--...+ - .+.+..+|+++... .+.+...|...+..+.+.|+++.|..+
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2222211000012233433333221110 0 23345556555542 122344555555555666666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 005127 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------GVIP---DEVFLSALIDFAGHAGKVEAAF 324 (713)
Q Consensus 257 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~p---~~~t~~~li~~~~~~g~~~~a~ 324 (713)
|+..... +.+...|.. |......++. ++.+.+. +..+ ....|...+..+.+.+..+.|.
T Consensus 236 ~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666555 333333322 1111111111 1221110 0001 1244666666666777889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 005127 325 EILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (713)
Q Consensus 325 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (713)
.+|... +.. ..+..+|......-...+ +.+.|..+|+...+.- +.+...|...+.-..+.|+.+.|..+|+++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 999888 321 234445543333333334 6899999999887642 2335566777777778899999999998873
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 404 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
.....|...+.--...|+.+.+..+++++.+
T Consensus 382 ---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 ---KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2466777777777778999999998887764
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.40 E-value=1.8e-05 Score=74.84 Aligned_cols=127 Identities=14% Similarity=-0.024 Sum_probs=105.9
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005127 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (713)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 144 (713)
..++..+...|++++|+..|+...+++...|..+...+...|++++|...++...+.. +.+...+..+..+|...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455566678889999999998888888999999999999999999999999988875 557788999999999999999
Q ss_pred HHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005127 145 AMFEVFHEMVNAGIE--------------P-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (713)
Q Consensus 145 ~A~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 192 (713)
+|.+.|++..+.... | +..++..+..+|.+.|++++|...|++..+..
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999998875321 1 12678888889999999999999999988763
No 118
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.30 E-value=2.6e-05 Score=66.02 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (713)
...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|..+|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555566666666666666666665543 3345555666666666666666666666665543 2245555556666
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 005127 172 CAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~ 191 (713)
|...|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666655544
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.29 E-value=8.5e-05 Score=74.41 Aligned_cols=60 Identities=7% Similarity=-0.110 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhCCC-hhHHHHHHHHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKS----IKLKPT-VSTMNALITALCDGDQ-LPKTMEVLSDM 400 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p~-~~~~~~li~~~~~~g~-~~~A~~l~~~m 400 (713)
++..+...|.+.|++++|...+++..+ .+..+. ..+|..+...|.+.|+ +++|++.|++.
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 445555555555555555555554432 111111 3455555555555553 35555555554
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.27 E-value=0.00049 Score=69.66 Aligned_cols=182 Identities=6% Similarity=-0.002 Sum_probs=104.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (713)
++.+.....+....++|+++++.++... +-+..+|+.--..+...+ .++++++.++.+..... .+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 3333334444555567777777777764 335556666666666666 47777777777776643 36667776666666
Q ss_pred Hc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 005127 174 KA-G-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--------RAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (713)
Q Consensus 174 ~~-g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~pd~~~~~~ll~~ 243 (713)
+. + ++++++.+++++.+.. +-|..+|+.-.-.+.+.|.++ ++++.++++... -..|..+|+.....
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYL 210 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 65 5 6777777777777653 445666665444444433333 566666655543 12345555555555
Q ss_pred HHHcCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 005127 244 CANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (713)
Q Consensus 244 ~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 283 (713)
+.+.+. ++++.+.++...... +.|...|+-+-..+.+.|
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 555544 455555555555444 344555554444444443
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.27 E-value=0.00011 Score=73.46 Aligned_cols=128 Identities=9% Similarity=0.032 Sum_probs=86.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHH
Q 005127 310 LIDFAGHAGKVEAAFEILQEAKNQGIS-VG----IISYSSLMGACSNAKNWQKALELYEHMKS----I-KLKPT-VSTMN 378 (713)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~-~~~p~-~~~~~ 378 (713)
+...+...+++++|...+..+.+.... .+ ..+++.+...|...|++++|...|++..+ . +..+. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 444444555666666666666553211 11 23577777777777777777777777662 1 11222 34788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 005127 379 ALITALCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDD-VEVGLMLLSQAKE 437 (713)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~ 437 (713)
.+...|.+.|++++|++.+++..+ .+..+. ..+|..+..++.+.|+ +++|...+++..+
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999999999999988764 232333 5678888899999994 6999999988764
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.26 E-value=6.3e-05 Score=71.03 Aligned_cols=125 Identities=12% Similarity=-0.018 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 005127 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (713)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 281 (713)
.+...+...|++++|...|.+.. .|+..++..+...|.+.|++++|...|+...+.+ +.+...|..+..+|..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 34444555555555555555432 2344455555555555555555555555555443 3344555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 282 TGDWEFACSVYDDMTKKGVI--------------P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 282 ~g~~~~A~~l~~~m~~~g~~--------------p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
.|++++|+..|++..+.... | +...+..+..+|.+.|++++|...++...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666555543221 0 1134445555555555555555555555544
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.25 E-value=3.4e-05 Score=69.42 Aligned_cols=93 Identities=14% Similarity=0.045 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
|..+...+...|++++|...|++....... +...+..+...+...|++++|...+....+.. +.+..++..+...|.+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 334444444444444444444444433221 33334444444444444444444444443332 2233344444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 005127 352 AKNWQKALELYEHMK 366 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~ 366 (713)
.|++++|...|++..
T Consensus 94 ~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 94 LGKFRAALRDYETVV 108 (166)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 444444444444443
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.22 E-value=5.5e-05 Score=67.99 Aligned_cols=128 Identities=12% Similarity=-0.013 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 315 (713)
.+..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|...|++....... +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 44555556666677777777776666544 345666677777777777777777777776665432 5566666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 316 HAGKVEAAFEILQEAKNQGISVGIISY--SSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
..|++++|...+..+.+.. +.+...+ ..+...+.+.|++++|...+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777766653 2233333 333333566677777777766543
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.22 E-value=0.00089 Score=67.76 Aligned_cols=174 Identities=6% Similarity=-0.070 Sum_probs=128.5
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 005127 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-G-AVDR 215 (713)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~-g-~~~~ 215 (713)
+....++|+++++.+..... -+..+|+.--..+...+ .+++++.+++.+.... +-+..+|+.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 34556789999999998753 36778888877888888 5999999999999875 45778888776666666 6 8899
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---
Q 005127 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD--------RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--- 284 (713)
Q Consensus 216 A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--- 284 (713)
++++++.+... -+.|..+|+--.-++.+.|.++ ++.+.++.+.+.+ +.|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~---dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLP---DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSS---CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 99999998764 2446667766655555555555 8888888888876 5577788887777777765
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005127 285 ----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (713)
Q Consensus 285 ----~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 319 (713)
++++++.+++.....+. |...|.-+-..+.+.|.
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 67888888887776655 66777666655555554
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.21 E-value=6e-05 Score=63.70 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDM 295 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m 295 (713)
++..+...+...|++++|...|+++
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3333333333333444443333333
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.21 E-value=0.0001 Score=73.80 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-----VFLSALIDFAGHAGKVEAAFEILQEAKNQGI---SVG--II 340 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~--~~ 340 (713)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+....+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556667777777777777776654322111 1233344556677788888888887765321 111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-H
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSI-KLKPT-----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN-T 409 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 409 (713)
+++.+...|...|++++|...|++..+. ...|+ ..+|+.+...|...|++++|++.+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888888889999888888877621 00122 257888888899999999999998887542 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 005127 410 ITYSILLVACERKDDVEVG-LMLLSQAKE 437 (713)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a-~~~~~~m~~ 437 (713)
.+|..+..++.+.|+.++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888889999999999 776776653
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.19 E-value=0.00019 Score=71.81 Aligned_cols=166 Identities=5% Similarity=-0.065 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGT-----PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV---IPD--EV 305 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 305 (713)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334455566677777777777766555432111 12234455666777888888888888765321 112 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-H
Q 005127 306 FLSALIDFAGHAGKVEAAFEILQEAKN---Q-GISV--GIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-V 374 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~-~ 374 (713)
++..+...|...|++++|...+.+..+ . +..+ ...+++.+...|.+.|++++|...|++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 777888888888888888888887762 2 1111 1257888888999999999999999887642 11111 5
Q ss_pred HHHHHHHHHHHhCCChhHH-HHHHHHHH
Q 005127 375 STMNALITALCDGDQLPKT-MEVLSDMK 401 (713)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A-~~l~~~m~ 401 (713)
.+|..+...|.+.|++++| ...|++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788888999999999999 77677654
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.17 E-value=1.8e-05 Score=74.08 Aligned_cols=24 Identities=8% Similarity=-0.062 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 413 SILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
..+..++...|++++|...+++..
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344444555555555555554444
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.17 E-value=9.6e-05 Score=72.34 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=111.4
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHCCCCCC---------------
Q 005127 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTL-------ITTCAKSGKVDAMFEVFHEMVNAGIEPN--------------- 161 (713)
Q Consensus 104 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------- 161 (713)
..++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677777888887777764 3356666666 3444444444444444443332 1111
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-
Q 005127 162 -------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD- 233 (713)
Q Consensus 162 -------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd- 233 (713)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|...... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-Cccc
Confidence 2233445666777778888877777776543 44334455555677777777777777644321 0 111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 234 -HITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 299 (713)
...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2245556667777777777777777766433213 23455566666777777777777777776653
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.15 E-value=6.9e-05 Score=64.36 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (713)
..|......+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345555566666666666666666666553 3455666666666666666666666666666553 22455666666666
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 005127 173 AKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~ 191 (713)
...|++++|+..|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666554
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.14 E-value=6.2e-05 Score=64.25 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (713)
...|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555556666666666666666665543 3345556666666666666666666666665542 2245555566666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005127 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 212 (713)
|.+.|++++|...|++..... +.+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666655442 2244455555555544443
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.13 E-value=7.6e-06 Score=81.66 Aligned_cols=98 Identities=8% Similarity=-0.081 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666666666666666666666543 3355666666666666666666666666666543 224556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 005127 171 GCAKAGQVAKAFGAYGIMRS 190 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~ 190 (713)
+|...|++++|+..|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666544
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.13 E-value=1.3e-05 Score=71.41 Aligned_cols=99 Identities=7% Similarity=-0.047 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|...|++..+... .+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHH
Confidence 44566667777778888888888888877764 44677777788888888888888888888777642 25667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 005127 171 GCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~ 191 (713)
+|.+.|++++|+..|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877765
No 135
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.13 E-value=0.00086 Score=67.51 Aligned_cols=184 Identities=8% Similarity=0.030 Sum_probs=122.4
Q ss_pred hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHH----------HHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 005127 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (713)
Q Consensus 37 ~~g~~~-~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~ 102 (713)
+.|.++ +|+++++.+...+ |.+..+...-..+....+. +++++.+++.+. +.+..+|+.-.-.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456665 7899999999877 6555544333333333332 577777777543 56777888777777
Q ss_pred HhCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----
Q 005127 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (713)
Q Consensus 103 ~~~g--~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 175 (713)
...+ .+++++.++..+.+.. +-|..+|+.-.-.+...|. ++++++.++.+.+.. +.|..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 7777 4788888888888775 4567777777777777777 478888888888765 34777777766666554
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhh
Q 005127 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-----------GAVDRAFDVLAEMNA 225 (713)
Q Consensus 176 ----------g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~ 225 (713)
+.++++++.+.+..... +-|...|+.+-..+.+. +.++++++.++++..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 34677777777777653 44667776555444444 235566666666654
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.13 E-value=8e-05 Score=63.92 Aligned_cols=93 Identities=11% Similarity=-0.018 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 317 (713)
......|.+.|++++|...|++..+.+ +.+..+|..+..+|.+.|++++|+..|++..+.... +...|..+..++...
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHC
Confidence 333444444444444444444444433 233444444444444444444444444444433222 333444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 005127 318 GKVEAAFEILQEAKN 332 (713)
Q Consensus 318 g~~~~a~~~~~~m~~ 332 (713)
|++++|...|+...+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.13 E-value=7.1e-05 Score=64.25 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
...+..+...+.+.|++++|...|+...+.. +.+..++..+...|...|++++|+..|++..+.... +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 3344444455555555555555555554433 223445555555555555555555555555443221 34444444445
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005127 314 AGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~ 332 (713)
+...|++++|...+....+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555554444
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.12 E-value=6.3e-05 Score=73.62 Aligned_cols=190 Identities=11% Similarity=0.016 Sum_probs=125.7
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHh------------CCCC-----
Q 005127 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-------IDGCAKAGQVAKAFGAYGIMRS------------KNVK----- 194 (713)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~------------~g~~----- 194 (713)
..++...|.+.|.+..+.. +-....|+.+ ...+.+.++..+++..+..-.. .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5799999999999999875 2367788877 4566666666666666655544 2210
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CH
Q 005127 195 ---PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TP 269 (713)
Q Consensus 195 ---pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~ 269 (713)
--...+-.+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...... .| ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 00223344567778889999999999877642 3544455566667888888888888887443322 11 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 334 (713)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3567777778888888888888887764432243 2244555566777788888888877777654
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.11 E-value=8.8e-06 Score=81.19 Aligned_cols=94 Identities=14% Similarity=-0.073 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 315 (713)
.+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|+..+++..+.... +...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34444444455555555555555444433 224444555555555555555555555554443322 3444444444555
Q ss_pred hcCCHHHHHHHHHHHH
Q 005127 316 HAGKVEAAFEILQEAK 331 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~ 331 (713)
..|++++|...|....
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555554443
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.11 E-value=7.8e-05 Score=63.57 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
.+..+...|.+.|++++|...|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3333333333444444444444333
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.10 E-value=5.3e-05 Score=65.09 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
+...|..+...+...|++++|...++...+.. +.+..++..+...|...|++++|.+.|++..+.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455555666666666666666666655542 2345555556666666666666666666655543 224455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 005127 171 GCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~ 191 (713)
+|.+.|++++|...|++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 566666666666666555543
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.09 E-value=5.5e-05 Score=69.19 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=85.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCCCh--hH
Q 005127 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 392 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 392 (713)
..|++++|...+....+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+... |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4566777777777766654 3456777788888888888888888888776543 3456677777777 7778887 88
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 393 TMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 393 A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
|+..|++..+. .| +...+..+..++...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888774 34 4667777778888888888888888888874
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.09 E-value=2.8e-05 Score=69.15 Aligned_cols=94 Identities=9% Similarity=-0.085 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC 419 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 419 (713)
.+..+...|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|++.|++..+. .| +...|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHH
Confidence 33444444444455555555554444332 223444444555555555555555555554442 23 234444444455
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 005127 420 ERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 420 ~~~g~~~~a~~~~~~m~~ 437 (713)
...|++++|...|++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555444
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.08 E-value=2e-05 Score=73.78 Aligned_cols=98 Identities=18% Similarity=0.069 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC--
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-- 160 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-- 160 (713)
..+++.+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.+.|++..+. +-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344455555555555555555555554431 111 12334555555566666666666665554432 1011
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
...++..+...+...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12334455555555566666655555543
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.05 E-value=4e-05 Score=70.15 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 005127 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG-CAKAGQV--AKA 181 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~~A 181 (713)
.|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 345555555555554443 3344555555555555555555555555555442 1244455555555 4455555 555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 005127 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 182 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (713)
...|++..... +.+...+..+...|...|++++|...|.+...
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555442 22344555555555555666666655555544
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.01 E-value=0.00013 Score=74.69 Aligned_cols=87 Identities=10% Similarity=-0.093 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
.+|..+..+|.+.|++++|+..|++..+.... +...+..+..+|...|++++|...|+...+.. +.+..++..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45555555555555555555555555554322 44455555555555555555555555555442 22344555555555
Q ss_pred HhcCCHHHH
Q 005127 350 SNAKNWQKA 358 (713)
Q Consensus 350 ~~~g~~~~A 358 (713)
.+.|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.99 E-value=0.00013 Score=74.77 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (713)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 348 (713)
...|..+...|.+.|++++|+..|++.......... . ..+.+..+- +....+|..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------------~-~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS------------F-SNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC------------C-CSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc------------C-ChHHHHHHH--------HHHHHHHHHHHHH
Confidence 345666667777777777777777776654322110 0 000111000 0013566667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 005127 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEV 427 (713)
Q Consensus 349 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 427 (713)
|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+..++.+.|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766543 335667777777777777777777777777663 34 45566666677777777777
Q ss_pred H-HHHHHHHHH
Q 005127 428 G-LMLLSQAKE 437 (713)
Q Consensus 428 a-~~~~~~m~~ 437 (713)
+ ...++.|..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 6 445555543
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.98 E-value=0.00033 Score=58.26 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (713)
..|..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555555666666666666666665543 3345555666666666666666666666665543 22455555566666
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 005127 173 AKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~ 191 (713)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666665544
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.96 E-value=5.5e-05 Score=67.10 Aligned_cols=98 Identities=9% Similarity=-0.103 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 005127 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILL 416 (713)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 416 (713)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|++.|++.... .| +...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHH
Confidence 45566777788888889999988888887653 446778888888888899999999999888774 34 556777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 005127 417 VACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.++...|++++|...|+...+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888899999999999888764
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.95 E-value=4.1e-05 Score=67.97 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=7.4
Q ss_pred HHHHHHhCCChhHHHHHHHH
Q 005127 380 LITALCDGDQLPKTMEVLSD 399 (713)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~ 399 (713)
+..+|...|++++|++.|++
T Consensus 95 lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.93 E-value=0.00042 Score=57.62 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 342 YSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
+..+..+|.+.|++++|.+.|+..
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.93 E-value=0.006 Score=61.35 Aligned_cols=181 Identities=12% Similarity=0.028 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 005127 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEI 326 (713)
Q Consensus 250 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~a~~~ 326 (713)
++++..+++.+...+ +-+..+|+.-...+.+.+ .+++++.+++.+.+.... |...|+.-.-++...|. .+++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345555555555443 334555555554555555 255666666666655444 55555555545555555 4566666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-----
Q 005127 327 LQEAKNQGISVGIISYSSLMGACSNA--------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG----- 387 (713)
Q Consensus 327 ~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~----- 387 (713)
+..+.+.. +-|...|+.....+.+. +.++++.+.+....... +-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 66665554 33455555444444433 34677777777776543 44667777655555544
Q ss_pred ------CChhHHHHHHHHHHHCCCCCCHHHHHH--HH---HHHHhcCCHHHHHHHHHHHHH
Q 005127 388 ------DQLPKTMEVLSDMKSLGLCPNTITYSI--LL---VACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 388 ------g~~~~A~~l~~~m~~~g~~p~~~t~~~--ll---~a~~~~g~~~~a~~~~~~m~~ 437 (713)
+.++++++.++++.+ +.||. .|.. ++ .+....|..++....+.++++
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 457788888888887 35754 2322 11 122235666677777777766
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00024 Score=60.55 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=33.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH
Q 005127 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 392 (713)
.+.+.|++++|...|....+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|...|++++
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 90 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 90 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHH
Confidence 3333344444444443333322 1223334444444444444444444444433321 1223334444444444444444
Q ss_pred HHHHHHHHH
Q 005127 393 TMEVLSDMK 401 (713)
Q Consensus 393 A~~l~~~m~ 401 (713)
|++.|++..
T Consensus 91 A~~~~~~al 99 (126)
T 3upv_A 91 ALETLDAAR 99 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00026 Score=60.35 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (713)
..|..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555566666677777777776666653 3355666666666666777777777776666653 22455666666666
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 005127 173 AKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~ 191 (713)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666766666666666543
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.88 E-value=0.00015 Score=62.28 Aligned_cols=105 Identities=11% Similarity=0.197 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----HHHHH
Q 005127 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYS 413 (713)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~ 413 (713)
..+..+...|.+.|++++|+..|++..+.. +.+...|+.+..+|.+.|++++|++.|++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566667777777777777777766542 3346667777777777777777777777765421 1111 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005127 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (713)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 447 (713)
.+..++...|++++|++.|++.++. .||..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 5666777777777777777776653 3554443
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.86 E-value=0.00028 Score=60.50 Aligned_cols=103 Identities=14% Similarity=0.077 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYGA 167 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~ 167 (713)
++..+...+.+.|++++|+..|++.++.. +.+..+|+.+..+|.+.|++++|++.|++..+... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666677777777777777766653 33566666777777777777777777776654321 111 124555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005127 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 199 (713)
+..+|...|++++|++.|++.... .||..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 666666666777777766666543 344443
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00017 Score=76.54 Aligned_cols=147 Identities=12% Similarity=-0.019 Sum_probs=73.8
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhC
Q 005127 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (713)
Q Consensus 26 ~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (713)
...+--...+++.|++++|++.|.++.+......+..... .......+..+ .++..+...|...
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~--------------~al~~l~~~y~~~ 68 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGA--SVDDKRRNEQE--------------TSILELGQLYVTM 68 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSS--SBCSHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHH--HHHHHHhhhHH--------------HHHHHHHHHHHHC
Confidence 4455567788999999999999999988653211110000 00000111111 1345667777777
Q ss_pred CChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHc
Q 005127 106 KDSEGAFQVLRLVQEAG-LKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVN----AGIEPN-VHTYGALIDGCAKA 175 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g-~~pd~~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~ 175 (713)
|++++|.+.+..+...- -.++.. +.+.+-..+...|+.+.|.+++..... .+..+. ..++..+...|...
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 77777777776654321 111111 122222233334556666666555432 111111 23444555555555
Q ss_pred CCHHHHHHHHHHH
Q 005127 176 GQVAKAFGAYGIM 188 (713)
Q Consensus 176 g~~~~A~~l~~~m 188 (713)
|++++|..++.+.
T Consensus 149 g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 149 KQYKDSLALINDL 161 (434)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHH
Confidence 5555555555544
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.82 E-value=0.00021 Score=60.84 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 166 (713)
..|..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...|++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455666666777777777777777776654 34566666777777777777777777777665421 111 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005127 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (713)
Q Consensus 167 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 203 (713)
.+...|.+.|++++|...|++..+. .|+...+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 6666777777777777777766654 3444444333
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.82 E-value=0.00048 Score=59.47 Aligned_cols=98 Identities=8% Similarity=-0.063 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (713)
.+...|..+...+...|++++|...|....+.. +.+...+..+..++...|++++|...|+...+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345555555555666666666666666555543 3345555555555555666666666665555543 22445555555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 005127 170 DGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~ 189 (713)
.+|...|++++|+..|.+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 55555555555555555554
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.81 E-value=0.0002 Score=59.13 Aligned_cols=94 Identities=12% Similarity=0.033 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 005127 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP--DRVVFNALITAC 207 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~~~~~li~~~ 207 (713)
+..+...+...|++++|...|++..+.. +.+..+|..+...|...|++++|+..|++..+.. +. +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3444444555555555555555554432 2234445555555555555555555555555442 22 345555555555
Q ss_pred Hhc-CCHHHHHHHHHHhhh
Q 005127 208 GQS-GAVDRAFDVLAEMNA 225 (713)
Q Consensus 208 ~~~-g~~~~A~~~~~~m~~ 225 (713)
... |++++|.+.+.+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 555 555555555555544
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.79 E-value=0.00023 Score=62.34 Aligned_cols=95 Identities=8% Similarity=-0.017 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (713)
.+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|...|+...... +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 33444445555555555555555555543 3344555555555555555555555555555543 223444555555555
Q ss_pred HcCCHHHHHHHHHHHHh
Q 005127 174 KAGQVAKAFGAYGIMRS 190 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~ 190 (713)
..|++++|...|++...
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.79 E-value=0.00055 Score=61.54 Aligned_cols=98 Identities=13% Similarity=-0.014 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
...+..+...|.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3344555555556666666666666555543 334555666666666666666666666665554332 45555555666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 005127 314 AGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~ 333 (713)
|...|++++|...|.+..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666655543
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.77 E-value=0.00028 Score=60.06 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 330 (713)
|..+...+...|++++|...|++....... +...+..+...+...|++++|...+..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333334444444444444444444333211 2333333333444444444444444433
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.76 E-value=0.00029 Score=58.03 Aligned_cols=98 Identities=9% Similarity=0.064 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALI 169 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li 169 (713)
...|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|.+.|++..+.. +. +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3445555556666666666666666665543 3345556666666666666666666666665542 22 355566666
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhC
Q 005127 170 DGCAKA-GQVAKAFGAYGIMRSK 191 (713)
Q Consensus 170 ~~~~~~-g~~~~A~~l~~~m~~~ 191 (713)
..|.+. |++++|.+.|++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666554
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.76 E-value=0.00071 Score=60.78 Aligned_cols=98 Identities=19% Similarity=0.092 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 005127 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILL 416 (713)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 416 (713)
+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+. .| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45677788888889999999999998887653 346788888999999999999999999998875 45 577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 005127 417 VACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.++...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999988874
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.75 E-value=0.00049 Score=64.14 Aligned_cols=27 Identities=11% Similarity=-0.065 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
.+..+...+.+.|++++|+..|++...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555556666666666665554
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.00096 Score=58.21 Aligned_cols=95 Identities=8% Similarity=-0.027 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 005127 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (713)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 273 (713)
..+..+...+...|++++|.+.|++.... .|+ ...+..+...|...|++++|...++...+.. +.+...|.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 33444444444444444444444444321 222 2333334444444444444444444443332 22334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 274 IAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
.+..+|...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.0011 Score=57.82 Aligned_cols=99 Identities=12% Similarity=-0.003 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (713)
.+...+..+...+...|++++|...|+...+. .|+ ...+..+..+|...|++++|.+.|++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45667777777888888888888888887765 344 5667777777788888888888888777653 2356677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 166 GALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 166 ~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
..+..+|...|++++|...|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777778888888888888777665
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.75 E-value=0.00068 Score=58.47 Aligned_cols=93 Identities=14% Similarity=-0.067 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 315 (713)
.+..+...+...|++++|...|+.....+ +.+...|..+..+|...|++++|...|++..+.... +...+..+..+|.
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 88 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 33444444444444444444444443332 223344444444444444444444444444333221 2333333444444
Q ss_pred hcCCHHHHHHHHHHH
Q 005127 316 HAGKVEAAFEILQEA 330 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m 330 (713)
..|++++|...|...
T Consensus 89 ~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 89 EMESYDEAIANLQRA 103 (137)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 444444444444433
No 170
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.75 E-value=0.00042 Score=60.66 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=40.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005127 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 319 (713)
+...+.+.|++++|...|+.....+ +.+...|..+..+|.+.|++++|+..|++....... +...+..+..+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence 3344444444444444444444433 233444444444444444444444444444443322 23334444444444444
Q ss_pred HHHHHHHHHHHH
Q 005127 320 VEAAFEILQEAK 331 (713)
Q Consensus 320 ~~~a~~~~~~m~ 331 (713)
+++|...|+...
T Consensus 102 ~~~A~~~~~~al 113 (142)
T 2xcb_A 102 LDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.74 E-value=0.00048 Score=64.17 Aligned_cols=88 Identities=17% Similarity=-0.009 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
.+|..+..+|.+.|++++|+..+++....... +...+..+..+|...|++++|...|+...+.. +.+..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 45555555666666666666666665554322 44555555555555666666666655555442 22344455555555
Q ss_pred HhcCCHHHHH
Q 005127 350 SNAKNWQKAL 359 (713)
Q Consensus 350 ~~~g~~~~A~ 359 (713)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.0016 Score=68.90 Aligned_cols=165 Identities=8% Similarity=-0.037 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-CHH
Q 005127 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKY----NIKG-TPE 270 (713)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~ 270 (713)
+..|...|...|++++|.+.+..+......+ ++. .+.+.+-..+...|+++.|..++...... +..+ -..
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4445556666666666666655543311011 111 11111222223345555555555544321 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--H
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKK--GV--IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVG--I 339 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~--~ 339 (713)
++..+...|...|++++|..++++.... +. .| ...++..++..|...|++++|..++...... +.++. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 4555666666666666666666654432 11 11 1234555555555666666666555554321 11111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 340 ISYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
..+..+...+...|++++|...|.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23444444455555555555555444
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.63 E-value=0.00058 Score=57.91 Aligned_cols=93 Identities=10% Similarity=-0.057 Sum_probs=53.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005127 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (713)
Q Consensus 97 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (713)
.+...+.+.|++++|...|+...+.. +.+...+..+..++...|++++|+..|++..+... .+...+..+..+|.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 34445555666666666666665543 33455555666666666666666666666655431 24555556666666666
Q ss_pred CHHHHHHHHHHHHhC
Q 005127 177 QVAKAFGAYGIMRSK 191 (713)
Q Consensus 177 ~~~~A~~l~~~m~~~ 191 (713)
++++|+..|++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666665543
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.56 E-value=0.00073 Score=57.29 Aligned_cols=90 Identities=10% Similarity=-0.031 Sum_probs=42.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005127 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 319 (713)
+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3344445555555555555554443 334444445555555555555555555554444322 33344444444444444
Q ss_pred HHHHHHHHHHHH
Q 005127 320 VEAAFEILQEAK 331 (713)
Q Consensus 320 ~~~a~~~~~~m~ 331 (713)
+++|...++...
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.51 E-value=0.00058 Score=60.47 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTI 410 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ 410 (713)
++..+...|...|++++|...|++..+..- .++ ...+..+...|...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 555566666666666666666666543100 011 345666667777778888887777776532 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
++..+...+...|++++|...+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566667778888888888888877664
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.50 E-value=0.00064 Score=60.18 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 237 IGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
+..+...|...|++++|...++...+.... ++ ..++..+...|...|++++|...+++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444445555555555555443322100 00 1244455555555555555555555543
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.47 E-value=0.00081 Score=72.36 Aligned_cols=117 Identities=12% Similarity=-0.029 Sum_probs=56.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 323 (713)
+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|+..+++..+.... +...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 344455555555555554443 334455555555555555555555555555554332 444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 005127 324 FEILQEAKNQGISVGIISYSSLMGA--CSNAKNWQKALELYE 363 (713)
Q Consensus 324 ~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~l~~ 363 (713)
.+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555432 1112223333333 555566666666555
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.43 E-value=0.0045 Score=52.47 Aligned_cols=62 Identities=6% Similarity=-0.101 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
.+..+..+|.+.|++++|...|+...+.. +.+ ..++..+..+|.+.|++++|...|+++...
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33334444444444444444444444432 112 334444444555555555555555554443
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.41 E-value=0.0036 Score=53.10 Aligned_cols=91 Identities=10% Similarity=-0.071 Sum_probs=50.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 005127 99 MSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGC 172 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~ 172 (713)
...+...|++++|...|+.+.+... .+. ..+..+..++...|++++|...|+...+.... + ..++..+..+|
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 3445556666666666666655431 122 34555556666666666666666666554211 2 34455555566
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 005127 173 AKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~ 191 (713)
.+.|++++|...|+++...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665544
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.39 E-value=0.00047 Score=74.19 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=89.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005127 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (713)
Q Consensus 275 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 354 (713)
+...+.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|...+++..+.. +.+..++..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 334566788999999999988876443 57888888888999999999999999888874 4467788888889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhCCChhHHHHHHH
Q 005127 355 WQKALELYEHMKSIKLKPTVSTMNALITA--LCDGDQLPKTMEVLS 398 (713)
Q Consensus 355 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~ 398 (713)
+++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998887652 2233445555444 777888889988887
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.38 E-value=0.0019 Score=57.82 Aligned_cols=61 Identities=10% Similarity=-0.119 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
..|..+..+|.+.|++++|+..+++.++. .| +...|..+..++...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34444444555555555555555554442 22 344444555555555555555555555544
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.38 E-value=0.0024 Score=68.34 Aligned_cols=123 Identities=7% Similarity=-0.068 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 157 (713)
...|..+...+.+.|++++|...|++.++...... ..+|..+..+|.+.|++++|+..|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566666777777777777777777766421111 3445555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (713)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 216 (713)
+.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2244455555555555555555555555554432 12233444444444444444443
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.37 E-value=0.0024 Score=68.30 Aligned_cols=88 Identities=9% Similarity=-0.065 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (713)
Q Consensus 305 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 384 (713)
..|..+..+|.+.|++++|+..+..+.+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...+..+...+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555554443 2234455555555555555555555555555432 12233455555555
Q ss_pred HhCCChhHHH
Q 005127 385 CDGDQLPKTM 394 (713)
Q Consensus 385 ~~~g~~~~A~ 394 (713)
.+.++.++|.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.33 E-value=0.0003 Score=59.23 Aligned_cols=84 Identities=12% Similarity=-0.080 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005127 106 KDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (713)
|++++|+..|++.++.+ -+.+..++..+..+|...|++++|.+.|++..+... -+..++..+..+|.+.|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555555432 111233444455555555555555555555544421 134444445555555555555555
Q ss_pred HHHHHHh
Q 005127 184 AYGIMRS 190 (713)
Q Consensus 184 l~~~m~~ 190 (713)
.|++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.32 E-value=0.0023 Score=66.22 Aligned_cols=119 Identities=11% Similarity=0.029 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005127 237 IGALMKACANAGQVDRAREVYKMIHKYN---------------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~---------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 301 (713)
+..+...+.+.|++++|...|+...+.. -+.+..+|..+..+|.+.|++++|+..+++..+....
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 4444555556666666666555544310 0112234445555555555555555555555544322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (713)
Q Consensus 302 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 357 (713)
+...+..+..+|...|++++|...|+...+.. +.+...+..+...+.+.++.++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555444432 1233344444444444444333
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.29 E-value=0.0029 Score=56.51 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEA-------GL----------KADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~----------~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (713)
..+......+.+.|++++|+..|...++. .- +.+..+|..+..+|.+.|++++|+..++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556666777778888888777776653 00 11234566666666666666666666666666
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
.. +.+...|..+..+|...|++++|...|++....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 53 234556666666666666666666666666554
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.27 E-value=0.0025 Score=65.90 Aligned_cols=137 Identities=9% Similarity=-0.061 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (713)
.|..+...+.+.|++++|+..|++.++.- ++. ......+.+.+ .. +.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------LQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------GH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------HH-HHHHHHHHHHHHHHH
Confidence 45666667777777777777777666410 000 00000000000 00 112344555555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005127 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A 253 (713)
+.|++++|+..+++..+.. +.+...|..+..+|...|++++|.+.|++..... +.+...+..+..++.+.++.+++
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555442 2234455555555555555555555555554321 12334444444455555554444
Q ss_pred H
Q 005127 254 R 254 (713)
Q Consensus 254 ~ 254 (713)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.27 E-value=0.00056 Score=57.51 Aligned_cols=60 Identities=12% Similarity=0.016 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
++..+..+|.+.|++++|...|+...+.+ +.+..++..+..+|.+.|++++|+..|++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444444444333 2233444444444444444444444444433
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.13 E-value=0.015 Score=63.71 Aligned_cols=131 Identities=7% Similarity=0.010 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHH----------HHHHHHHhhhCC---CCCHHHHHHHHHHHHhCC
Q 005127 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (713)
Q Consensus 40 ~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 106 (713)
.-++|++.++++...+ |........-..+....++ +++|+++++.+. +.+..+|+.-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 3456778888777766 5554443333333333333 555555555432 344555555555555555
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005127 107 --DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 107 --~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
+++++++.++++.+.. +-+..+|+.-..++.+.| .++++++.++++.+..+ .|..+|+.....+.+
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHh
Confidence 4455555555555543 334445555544455555 45555555555554432 244555544444433
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.10 E-value=0.0058 Score=53.02 Aligned_cols=110 Identities=15% Similarity=0.037 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 005127 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKAL 359 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 359 (713)
++++|++.|++..+.|. |+.. +...|...+.+++|.+.|....+.| +...+..|-.+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34455555555554442 2222 3333444444455555555555443 34444455555544 45555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCC
Q 005127 360 ELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLG 404 (713)
Q Consensus 360 ~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 404 (713)
+.|++..+. -+...+..|-..|.. .++.++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555555443 234444444444444 445555555555544443
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.09 E-value=0.041 Score=60.24 Aligned_cols=172 Identities=6% Similarity=-0.051 Sum_probs=108.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005127 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (713)
...++|++.++.+.+.. +-+..+|+.--.++...++ ++++++.++.+.+.. +.+..+|+.-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34456777777777764 3345566665555555555 777888888877765 33667777777777777
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc-----
Q 005127 176 G--QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA----- 247 (713)
Q Consensus 176 g--~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~----- 247 (713)
+ +++++++.++++.+.. +-|..+|+.-...+.+.| .++++++.++++... -..|..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhccccc
Confidence 7 6688888888877764 446777777666666777 677777777776643 133556666655555543
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 005127 248 ---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (713)
Q Consensus 248 ---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 284 (713)
+.++++.+.++.....+ +.+..+|+-+-..+.+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33455666665555544 3345555555555555444
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.09 E-value=0.002 Score=65.89 Aligned_cols=147 Identities=17% Similarity=0.082 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (713)
..|..+...+.+.|++++|...|+...+. .|+... +...++.+++...+ . ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 34566666777788888888888877764 333321 11112222221111 0 12455566666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHH-HHHcCCH
Q 005127 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKA-CANAGQV 250 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~-~~~~g~~ 250 (713)
.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|.+.... .|+ ...+..+... ....+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l----~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665542 234556666666666666666666666665432 232 2233333333 2233455
Q ss_pred HHHHHHHHHHHhc
Q 005127 251 DRAREVYKMIHKY 263 (713)
Q Consensus 251 ~~A~~~~~~m~~~ 263 (713)
+.+..+|..|...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 5566666655443
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.07 E-value=0.0016 Score=66.64 Aligned_cols=146 Identities=10% Similarity=-0.004 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
..+..+...+.+.|++++|+..|++..... |+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 446666777778888888888888876542 33221 122233333332221 13667777788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHH-HHhcCCHHH
Q 005127 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVA-CERKDDVEV 427 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a-~~~~g~~~~ 427 (713)
.+.|++++|...|++..+.. +.+...|..+..+|...|++++|++.|++..+ +.|+.. .+..+... ....+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777643 34567788888888888888888888887765 345433 33333333 233456667
Q ss_pred HHHHHHHHHH
Q 005127 428 GLMLLSQAKE 437 (713)
Q Consensus 428 a~~~~~~m~~ 437 (713)
+...|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7777777765
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.97 E-value=0.01 Score=52.24 Aligned_cols=94 Identities=11% Similarity=-0.035 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCC
Q 005127 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKA------DC-----KLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GIE 159 (713)
Q Consensus 96 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------d~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~ 159 (713)
......+.+.|++++|+..|++.++..... +. ..|+.+..++.+.|++++|+..|++.++. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 344445566667777777776666543210 11 25566666666666666666666665543 012
Q ss_pred C-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 160 P-NVHTY----GALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 160 ~-~~~~~----~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
| +...| .....++...|++++|+..|++..
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 23344 455555555555555555555543
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.97 E-value=0.021 Score=49.37 Aligned_cols=106 Identities=13% Similarity=-0.041 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 005127 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFG 183 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 183 (713)
+++|+..|++..+.| .++.. |...|...+.+++|.++|++..+.| +...+..|-..|.. .+++++|+.
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 444444444444444 22221 3333434444444555555544432 34444444444444 444555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhh
Q 005127 184 AYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMN 224 (713)
Q Consensus 184 l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 224 (713)
+|++..+.| +...+..|-..|.. .++.++|.+.|.+..
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 555444443 33444444444444 444444444444443
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.94 E-value=0.012 Score=51.81 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
.|+.+..++.+.|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555555555444
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00091 Score=55.11 Aligned_cols=62 Identities=8% Similarity=-0.053 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
.|..+...+...|++++|...|+...+.. +.+..++..+..++.+.|++++|.+.|++..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444444555555555555555554432 223444444555555555555555555554443
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.82 E-value=0.0057 Score=65.44 Aligned_cols=89 Identities=9% Similarity=-0.030 Sum_probs=45.4
Q ss_pred HHHcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCCC-HHHHHH
Q 005127 172 CAKAGQVAKAFGAYGIMRSK---NVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAE----VHPVDPD-HITIGA 239 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~---g~~p----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~pd-~~~~~~ 239 (713)
+...|++++|+.++++..+. -+.| ...+++.|..+|...|++++|..++.+.... -..-.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566777777666655431 1111 1345666666666666666666666554321 0011222 234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 005127 240 LMKACANAGQVDRAREVYKMI 260 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m 260 (713)
|...|...|++++|..++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555543
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.76 E-value=0.0057 Score=65.44 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=37.4
Q ss_pred HHcCCHHHHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHH
Q 005127 245 ANAGQVDRAREVYKMIHKY---NIKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK-----GV-IPD-EVFLSAL 310 (713)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~t~~~l 310 (713)
...|++++|..++++..+. -+.+ ...+++.|...|...|++++|..++++.+.. |. .|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445555555555444321 1111 1234455555555555555555555544321 11 111 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 005127 311 IDFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m 330 (713)
...|...|++++|..++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 44444455555554444443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0017 Score=53.44 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=22.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
+...+...|++++|...|....+.. +.+..++..+..+|.+.|++++|...|++..
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333334444444444444333332 1223334444444444444444444444443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.72 E-value=0.018 Score=44.96 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
.+..+...+...|++++|...|+...+.. +.+..++..+...|.+.|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 33444444444555555555554444432 223444444444555555555555555544443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.71 E-value=0.016 Score=45.23 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
.|..+...+...|++++|...++...+.. +.+..++..+..++.+.|++++|.+.|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444445555555555555444432 223444444444455555555555555444443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.63 E-value=0.01 Score=49.24 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
...+..+...|...|++++|...|+...+.+ +.+...|..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555555555444433 2334444444444444455555544444443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.62 E-value=0.013 Score=48.58 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 111 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
|+..|+...+.. +.+...+..+...|...|++++|...|++..+.. +.+..+|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444332 2334455555555555555555555555555442 1234445555555555555555555555444
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.48 E-value=0.0057 Score=53.82 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (713)
Q Consensus 424 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 453 (713)
++++|.+.|++.++ +.|+...|.--+.+
T Consensus 106 ~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 106 NFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45555555555554 34555555444444
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.36 E-value=0.011 Score=51.97 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005127 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-----------GQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (713)
Q Consensus 143 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 205 (713)
+++|+..|++.++... -+..+|..+..+|... |++++|+..|++..+. .|+...|...+.
T Consensus 62 ~~eAi~~le~AL~ldP-~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 62 IQEAITKFEEALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3466666666655532 2445566666666554 3666777777666654 455444444433
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.26 E-value=0.14 Score=51.65 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005127 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (713)
Q Consensus 124 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 201 (713)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5677888888777777799999999999988874 78778878888888899999999999888776 56666654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.13 E-value=0.027 Score=45.41 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
...+..+...|.+.|++++|...|+...+.+ +.+...|..+..+|.+.|++++|...|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555555554443 2233445555555555555555555554443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.01 E-value=0.036 Score=44.61 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 153 (713)
...|..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|.+.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444444444432 223334444444444444444444444443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.77 E-value=0.13 Score=52.01 Aligned_cols=64 Identities=9% Similarity=-0.059 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 372 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
.+...|.++...+...|++++|+..++++...+ |+...|..+-..+.-.|+.++|.+.|++...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344455555444444455555555555555532 5544444444555555555555555555554
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.60 E-value=0.32 Score=55.75 Aligned_cols=129 Identities=13% Similarity=0.059 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005127 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (713)
Q Consensus 131 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 210 (713)
..++..+.+.|..+.|.++.+.-. .-.......|+++.|+++.+.+ .+...|..|...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 455555666666666665442111 1123344566666666664433 2456666666666666
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005127 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (713)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 290 (713)
|+++.|.+.|..+.. |..+...|...|+.+...++-+.....|- ++....+|.+.|++++|++
T Consensus 695 ~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp TCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHH
Confidence 666666666665531 23344444455555554444444443331 2333334444555555555
Q ss_pred HHHH
Q 005127 291 VYDD 294 (713)
Q Consensus 291 l~~~ 294 (713)
++.+
T Consensus 758 ~~~~ 761 (814)
T 3mkq_A 758 LLIK 761 (814)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.54 E-value=0.26 Score=56.55 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=30.1
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
+...|++++|.++.+.+ .+...|..|...+.+.++++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 44566677766664333 255667777777777777777777776653
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.91 E-value=0.33 Score=42.14 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 005127 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVG 428 (713)
Q Consensus 354 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a 428 (713)
.+..+++-|.+..+.+ .++..+...+..++++.. +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3456667777666655 367788878888888888 5668999998887754 35 234455566788999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 429 LMLLSQAKEDGVIPNLVMFKCIIGM 453 (713)
Q Consensus 429 ~~~~~~m~~~g~~p~~~~~~~li~~ 453 (713)
+++++.+.+ ++|+..--..|..+
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHHHHH
Confidence 999999888 57766555555444
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.78 E-value=0.14 Score=53.79 Aligned_cols=61 Identities=8% Similarity=-0.065 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 376 TMNALITALCDGDQLPKTMEVLSDMKS-----LG-LCPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
+++.|...|...|++++|+.++++... .| -.|+ ..+++.|...|...|++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344444444444444444444444321 11 1121 2334445555555555555555554443
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.75 E-value=0.26 Score=51.70 Aligned_cols=60 Identities=22% Similarity=0.132 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKK-----GV-IPD-EVFLSALIDFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m 330 (713)
+++.+...|...|++++|+.++++.+.. |. .|+ ..+++.|...|...|++++|..++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444444444444444444443321 11 111 133444555555555555555555443
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.68 E-value=0.076 Score=55.70 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHH
Q 005127 317 AGKVEAAFEILQEAKNQ---GISV----GIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KPT-VSTMNALIT 382 (713)
Q Consensus 317 ~g~~~~a~~~~~~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~-~p~-~~~~~~li~ 382 (713)
.|++++|..++++..+. -+.| ...+++.|..+|...|++++|..++++..+ .|- -|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777665442 1111 135677777777777777777777776543 110 122 245666666
Q ss_pred HHHhCCChhHHHHHHHHHH
Q 005127 383 ALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~ 401 (713)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6777777777776666654
No 217
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=94.62 E-value=0.08 Score=40.77 Aligned_cols=77 Identities=14% Similarity=0.247 Sum_probs=47.3
Q ss_pred eeccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccCCccceeccCCchhhhhhhhhhHHHHHHHHHhCCCCCCC
Q 005127 578 VVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGN 657 (713)
Q Consensus 578 ~~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 657 (713)
.+|+|++++..|.-.+...|++...+.......+.+. |++|.|.|+....+.++.+|.+.|++-+..|.
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~---------II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~-- 70 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLS---------VITGRGNHSQGGVARIKPAVIKYLISHSFRFS-- 70 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE---------EECCC---------CHHHHHHHHHHHTTCCEE--
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCceEEE---------EEECCCCCCCCCcchHHHHHHHHHHhCCCcee--
Confidence 4799999999887776566665544333323345443 45788877644444599999999999876664
Q ss_pred Ccc-ceEEe
Q 005127 658 GSY-GKIRI 665 (713)
Q Consensus 658 ~~~-g~~~~ 665 (713)
+.| |.|.+
T Consensus 71 e~n~G~l~V 79 (82)
T 3fau_A 71 EIKPGCLKV 79 (82)
T ss_dssp EEETTEEEE
T ss_pred eCCCEEEEE
Confidence 446 88876
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.49 E-value=0.12 Score=54.23 Aligned_cols=60 Identities=8% Similarity=-0.074 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKY-----N--IKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (713)
+++.|..+|...|++++|..++++..+. | .+....+++.|...|...|++++|+.+|++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4455555555555555555555444321 1 0001223444455555555555555554443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.49 E-value=0.13 Score=40.80 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=24.0
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 137 CAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
+.+.|++++|.+.|++..+.. +.+.. .|..+..+|...|++++|+..|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334444444444444444432 11233 4444444444444455554444444433
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.38 E-value=0.25 Score=39.01 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=27.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 243 ACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 243 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
.+.+.|++++|...|+...+.. +.+.. .|..+..+|...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555554433 22334 4555555555555555555555555444
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.93 E-value=1.4 Score=39.24 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=22.5
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005127 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (713)
.+.|+++.|.++.+++ -+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 13445555555555555555555555443
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.90 E-value=2.5 Score=35.44 Aligned_cols=138 Identities=15% Similarity=0.105 Sum_probs=73.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005127 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A 253 (713)
-.|.+++..++..+..+.. +..-||.+|--....-+-+-..++++.+-.. .|. ..+|++...
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-----FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-----FDL----------DKCQNLKSV 80 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-----SCG----------GGCSCTHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-----cCc----------HhhhcHHHH
Confidence 3566666677766665432 4555666666666666666666666665331 111 122333333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 254 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
...+-.+-. +.......++.+...|+-++-.+++.++.. +..|+......+..||.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 222222211 113344455556666666666666666433 23445566666666666666666666666666666
Q ss_pred CC
Q 005127 334 GI 335 (713)
Q Consensus 334 g~ 335 (713)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 54
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.21 E-value=0.83 Score=39.56 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChhHHH
Q 005127 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTM 394 (713)
Q Consensus 320 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 394 (713)
+..+.+-|.+....+. ++..+...+..++++.+ +++++..+|+...+.. .| +...+-.|.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555553 56677777777777777 5567777777776643 23 2445555666778888888888
Q ss_pred HHHHHHHHCCCCCCH
Q 005127 395 EVLSDMKSLGLCPNT 409 (713)
Q Consensus 395 ~l~~~m~~~g~~p~~ 409 (713)
+.++.+.+ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 88888777 46744
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.17 E-value=0.75 Score=36.21 Aligned_cols=64 Identities=6% Similarity=-0.043 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 234 HITIGALMKACANAGQ---VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
...+..+..++...++ .++|..+|++..+.+ +.++.....+...+.+.|++++|+..|+++.+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3344444444433332 455555555555544 444555555555555666666666666665554
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.95 E-value=4.7 Score=35.79 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=24.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (713)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34555555555554443 12345555555555555555555555543
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.58 E-value=1.5 Score=34.42 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 125 ADCKLYTTLITTCAKSGK---VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 125 pd~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
.|...+..+..++...++ .++|..+|++..+.. +-+..+...+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555555543333 466666666665553 224555555556666666666666666666554
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.25 E-value=4.5 Score=33.90 Aligned_cols=63 Identities=16% Similarity=0.053 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005127 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 369 (713)
.+...++.....|+.++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344445555555665555555555433 224555555555666666666666666665555554
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.87 E-value=1.3 Score=35.59 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 340 ISYSSLMGACSNAKNWQKALELYEHMKSIK------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.-+..|...+.+.|+++.|...|+...+.- -.+....+..|..+|.+.|++++|+..+++..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445555555555555555555443210 012234445555555555555555555555544
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.55 E-value=1.7 Score=34.88 Aligned_cols=62 Identities=10% Similarity=-0.094 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAG------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 190 (713)
-+..|...+...+++..|..+|+...+.- -.+...++..|..+|.+.|+++.|+..+++..+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33445555555555555555555544320 012344455555555555555555555555544
No 230
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.16 E-value=9.6 Score=39.82 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=86.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCC----HHH
Q 005127 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEV 271 (713)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~ 271 (713)
..|...|-..|++.+|.+++.++..+..+..+. ...+...+..|...+++..|..++..+... ...++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 456677777888888888887776543332222 234555667788888888888887765321 11122 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALID----FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~----~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 346 (713)
|..++..+...+++.+|...|.+.... ...-|...+..++. ...-.+....-..+.........-++...|..|+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 566677777788888887777766432 11112222221111 1111111111112222222222234566777777
Q ss_pred HHHHhc--CCHHHHHHHHHH
Q 005127 347 GACSNA--KNWQKALELYEH 364 (713)
Q Consensus 347 ~~~~~~--g~~~~A~~l~~~ 364 (713)
.+|... .+++...+.|..
T Consensus 301 k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHhchHhhhHHHHHHHHH
Confidence 777654 345555555544
No 231
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=91.12 E-value=1 Score=35.70 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=54.5
Q ss_pred CeeeccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccCCccceeccCCchhhhhhhhhhHHHHHHHHHhCCCCC
Q 005127 576 PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQ 655 (713)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~ 655 (713)
...+|++++++..|.-.+...|+...........++.+ .|++|.|.++....+.++.+|.+.|++.+..|.
T Consensus 8 ~~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v---------~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~ 78 (96)
T 2d9i_A 8 QNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYL---------SVITGRGNHSQGGVARIKPAVIKYLISHSFRFS 78 (96)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEE---------EEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEE
T ss_pred CCeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEE---------EEEECcCCCCCCCcchHHHHHHHHHhhCCCccc
Confidence 45899999999999877766777665433322234544 345788888754445699999999999877663
Q ss_pred CCCcc-ceEEe
Q 005127 656 GNGSY-GKIRI 665 (713)
Q Consensus 656 ~~~~~-g~~~~ 665 (713)
+-+ |.+.+
T Consensus 79 --egg~Ga~~V 87 (96)
T 2d9i_A 79 --EIKPGCLKV 87 (96)
T ss_dssp --CCSTTCEEE
T ss_pred --cCCCcEEEE
Confidence 223 77765
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=89.96 E-value=2.2 Score=41.33 Aligned_cols=93 Identities=11% Similarity=0.057 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCH
Q 005127 108 SEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAK-----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-GQV 178 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~ 178 (713)
...|...+++.++. .|+ ...|..|...|.+ .|+.++|.+.|++..+....-+..++....+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666664 444 5577788888887 388888888888888764333467777777777774 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHH
Q 005127 179 AKAFGAYGIMRSKNVK--PDRVVFNA 202 (713)
Q Consensus 179 ~~A~~l~~~m~~~g~~--pd~~~~~~ 202 (713)
+.|.+.+++....... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888777555 55444443
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=89.32 E-value=16 Score=35.26 Aligned_cols=94 Identities=13% Similarity=-0.006 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 005127 250 VDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVEA 322 (713)
Q Consensus 250 ~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~ 322 (713)
...|...+++..+.+-.- +...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 345555555555543110 245667777777763 77777777777776654322345555566666663 67777
Q ss_pred HHHHHHHHHHCCCC--CCHHHHH
Q 005127 323 AFEILQEAKNQGIS--VGIISYS 343 (713)
Q Consensus 323 a~~~~~~m~~~g~~--~~~~~~~ 343 (713)
+.+.+++....... |+....|
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 77777777666544 4443333
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.57 E-value=3.8 Score=35.15 Aligned_cols=106 Identities=10% Similarity=-0.010 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHHcCChhHHHHHHHHHH
Q 005127 88 PNPTLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCK----LYTTLIT---TCAKSGKVDAMFEVFHEMV 154 (713)
Q Consensus 88 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~~----~~~~li~---~~~~~g~~~~A~~~~~~m~ 154 (713)
.+.|..+|-..+...-+.|+. +...++|++.... ++|+.. .|-.|-- .+...+++++|.++|+.+.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356778888888888888888 8888888888764 455421 1111111 1123478899999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005127 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (713)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 195 (713)
+. .+.=...|-.....-.+.|++..|.+++.+....+..|
T Consensus 88 ~~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 AN-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HH-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HH-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 65 23337777777777788899999999999988877554
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.81 E-value=3 Score=35.75 Aligned_cols=51 Identities=14% Similarity=0.025 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005127 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (713)
Q Consensus 318 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 369 (713)
++.++|.++|+.+.+.+-.- ..+|......-.+.|++..|++++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554432222 4444444444455555555555555555443
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.71 E-value=3.6 Score=34.23 Aligned_cols=90 Identities=14% Similarity=0.045 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 005127 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK---TMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEV 427 (713)
Q Consensus 353 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~ 427 (713)
..+..+.+-|......| .++..+--.+..++.+.....+ ++.++++....+ .| +....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 33445555555554433 2566665566667776666555 777777766543 23 22233345567778888888
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q 005127 428 GLMLLSQAKEDGVIPNLVM 446 (713)
Q Consensus 428 a~~~~~~m~~~g~~p~~~~ 446 (713)
|++.++.+++ ++|+..-
T Consensus 93 A~~~~~~lL~--~eP~n~Q 109 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHH--hCCCCHH
Confidence 8888877776 4555433
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.43 E-value=6.5 Score=32.65 Aligned_cols=87 Identities=10% Similarity=0.024 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChhHH
Q 005127 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKT 393 (713)
Q Consensus 319 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 393 (713)
.+..+.+-|......|. ++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555544443 566666666667777766554 777777776543 12 223344456678888888888
Q ss_pred HHHHHHHHHCCCCCCH
Q 005127 394 MEVLSDMKSLGLCPNT 409 (713)
Q Consensus 394 ~~l~~~m~~~g~~p~~ 409 (713)
.+.++.+.+ +.|+.
T Consensus 94 ~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHH--hCCCC
Confidence 888888777 46643
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.24 E-value=34 Score=35.54 Aligned_cols=149 Identities=12% Similarity=0.121 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHH
Q 005127 308 SALIDFAGHAGKVEAAFEILQEAKNQ--GISVG---IISYSSLMGACSNAKNWQKALELYEHMKS----IKLKPT--VST 376 (713)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p~--~~~ 376 (713)
..|...|...|++.+|..++..+... +.... ...+...+..|...+++..|..++..+.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556666667777777776665432 21111 34556667777777888887777776532 111222 234
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 377 MNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYS----ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 451 (713)
+..++..+...+++.+|.+.|.+..+. ...-|...+. .++.+..-++....-..+.....+....++...|..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 566666677778888887777766431 1111222221 11112222222222222333333322335667778888
Q ss_pred HHHHh
Q 005127 452 GMCSR 456 (713)
Q Consensus 452 ~~~~r 456 (713)
.++..
T Consensus 301 k~f~~ 305 (445)
T 4b4t_P 301 KLFTT 305 (445)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77653
No 239
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=85.29 E-value=1.5 Score=37.15 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=53.1
Q ss_pred eeeccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccCCccceeccCCchhhhhhhhhhHHHHHHHHHhCCCCCC
Q 005127 577 VVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQG 656 (713)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 656 (713)
..+|++++++..|.-.+...|+............+.+. |++|.|.++....+.++..|.+.|++.+..|..
T Consensus 54 ~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v~---------IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e 124 (135)
T 2vkc_A 54 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLS---------VITGRGNHSQGGVARIKPAVIKYLISHSFRFSE 124 (135)
T ss_dssp TEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCCCSEEE---------EECCSCSSSCCSCCTHHHHHHHHHHTTTCEEEE
T ss_pred ceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEE---------EEECCCcCCCCCCchHHHHHHHHHhcCCCceee
Confidence 58999999999998777667776554333333355443 457888876444455899999999998766532
Q ss_pred CCccceEEe
Q 005127 657 NGSYGKIRI 665 (713)
Q Consensus 657 ~~~~g~~~~ 665 (713)
. -.|.+.+
T Consensus 125 ~-g~G~~~V 132 (135)
T 2vkc_A 125 I-KPGCLKV 132 (135)
T ss_dssp C-STTEEEE
T ss_pred C-CCCeEEE
Confidence 1 2276665
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.22 E-value=7.5 Score=30.64 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
+.-+..+-++.+....+.|++....+.|.||.+.+++.-|.++|+-++.. +.+...+|..+++-+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELR 90 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHHh
Confidence 34467777778888889999999999999999999999999999988754 2233557888886543
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.76 E-value=5.4 Score=44.50 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005127 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (713)
Q Consensus 349 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (713)
|...|+++.|.++-++....- +-+-.+|-.|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334455555555555544331 122445555555555555555555555543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.33 E-value=6.4 Score=40.33 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISY 342 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~ 342 (713)
+...++..+...|++++|+..+..+.....- +...+..+|.++.+.|+..+|++.|+...+ .|+.|...+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445566666777777777777776655433 666777777777777777777777776543 3777776554
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.00 E-value=17 Score=40.57 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=40.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
+.|...|+++.|+.+-++....- +.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34556788888888887776653 4557788888888888888888888877764
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.58 E-value=7 Score=40.04 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFN 201 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~~~ 201 (713)
+...++..+...|+++++...+..+.... +.+...|..+|.+|.+.|+..+|++.|++... .|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34556777778888888888877776653 44777888888888888888888888887653 48888876643
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.53 E-value=39 Score=40.04 Aligned_cols=88 Identities=9% Similarity=0.080 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005127 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (713)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 203 (713)
.-|..++..+-+.+.++.+.+.-....+....-+. ..|..+.+.+...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 44677777777777777777766665543222121 2577778888888888888888877776533 35667777
Q ss_pred HHHHHhcCCHHHHH
Q 005127 204 ITACGQSGAVDRAF 217 (713)
Q Consensus 204 i~~~~~~g~~~~A~ 217 (713)
+..+|..|..+.-.
T Consensus 978 V~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 978 VNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHhCCChhhhh
Confidence 77777777765544
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.55 E-value=14 Score=29.09 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 286 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++++-++.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555443
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.10 E-value=15 Score=30.73 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
-+..+-++.+...++.|++....+.|.||-+.+++..|.++|+-++.. ..+...+|..+++-+.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqElk 133 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELR 133 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHHh
Confidence 356666777777889999999999999999999999999999988754 3344667888886543
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.88 E-value=22 Score=27.80 Aligned_cols=81 Identities=20% Similarity=0.097 Sum_probs=59.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 005127 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 116 (713)
...+.+||..+-+.+...+. ...+...-+......|++++|..+.+..+.||...|-+|-. .+.|..+++..-+.
T Consensus 18 G~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 35678899999999988763 33333333455667899999999999888999999887754 45677777777776
Q ss_pred HHHHcC
Q 005127 117 LVQEAG 122 (713)
Q Consensus 117 ~m~~~g 122 (713)
++-..|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 776665
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.30 E-value=24 Score=27.72 Aligned_cols=81 Identities=11% Similarity=0.000 Sum_probs=57.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 005127 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 116 (713)
...+.+||..+-+.+...+. ...+...-+......|++++|..+.+..+.||...|-+|-.. +.|..+++..-+.
T Consensus 19 G~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 35678899999999988763 333333334456678899999999998889999988877543 4566666666665
Q ss_pred HHHHcC
Q 005127 117 LVQEAG 122 (713)
Q Consensus 117 ~m~~~g 122 (713)
++-..|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 666555
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.51 E-value=63 Score=38.30 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 346 (713)
-|..++..+.+.+.++.+.++-....+....-+. ..|..+..++...|++++|...+-.+.....+ ......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 4677888888888888888877765543221121 25778888888999999998888877765443 45677788
Q ss_pred HHHHhcCCHHHHH
Q 005127 347 GACSNAKNWQKAL 359 (713)
Q Consensus 347 ~~~~~~g~~~~A~ 359 (713)
...|..|..+.-.
T Consensus 979 ~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 979 NQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHCCHHHHH
T ss_pred HHHHhCCChhhhh
Confidence 8778777765543
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.67 E-value=26 Score=27.48 Aligned_cols=86 Identities=15% Similarity=0.025 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005127 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (713)
Q Consensus 319 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (713)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45556666555555542 22222223345567777777777665544 677777766543 34566666666665
Q ss_pred HHHHCCCCCCHHHHH
Q 005127 399 DMKSLGLCPNTITYS 413 (713)
Q Consensus 399 ~m~~~g~~p~~~t~~ 413 (713)
++..+| .|....|.
T Consensus 94 ~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 94 RLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHTTCC-CHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 665554 44444444
No 252
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.57 E-value=25 Score=27.56 Aligned_cols=86 Identities=15% Similarity=0.061 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005127 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (713)
Q Consensus 319 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (713)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45556666555555542 22222223345567777777776655444 677777765533 35666666666666
Q ss_pred HHHHCCCCCCHHHHH
Q 005127 399 DMKSLGLCPNTITYS 413 (713)
Q Consensus 399 ~m~~~g~~p~~~t~~ 413 (713)
++..+| .|....|.
T Consensus 93 ~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 93 GLGGSS-DPALADFA 106 (115)
T ss_dssp HHHTCS-SHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 666554 44444444
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.59 E-value=28 Score=29.10 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 285 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
.-+..+-++.+...++.|+.....+.+.+|-+.+++..|..+|+-++.+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3345555555555666666666666666666666666666666665544
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.67 E-value=59 Score=30.85 Aligned_cols=53 Identities=11% Similarity=0.244 Sum_probs=44.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 005127 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (713)
.+.+++.|.+++|++....-.+.. |.+...-..++++++-.|+++.|.+-++.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~ 56 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQ 56 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 567889999999999999999987 77888778888888888888888877664
No 255
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=61.02 E-value=0.0075 Score=62.18 Aligned_cols=260 Identities=14% Similarity=0.145 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (713)
.|..|..+....++..+|++.|- + .-|+..|..+|.++.+.|.+++-.+.+....+. ..+...=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHH
Confidence 46666666666666665554431 1 124445666677766677776666666555443 223334456666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005127 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A 253 (713)
+.++..+-.+.+ -.||..-...+..-|...|.++.|.-+|..+.. |.-|...+.+.|++..|
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----------CTTTSSSSSSCSGGGSS
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----------HHHHHHHHHHHHHHHHH
Confidence 666644322221 134444455556666666666666655554321 11122223333333333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 254 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
.+.-+ -..++.||..+-.+|...+.+.-|.-.--.+.-.. | -...++..|...|.+++-+.+++.-...
T Consensus 190 VdaAr------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGAR------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTT------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHH------hcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 22111 12244567777777777776665544433333211 1 1223455566667776666666655422
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC------CHHHHHHHHHHHHhCCChhHHHH
Q 005127 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKS----IKLKP------TVSTMNALITALCDGDQLPKTME 395 (713)
Q Consensus 334 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p------~~~~~~~li~~~~~~g~~~~A~~ 395 (713)
-.....+|+-|.-.|+|-. ++ ++++.++- .+++. ....|.-++-.|++-.+++.|..
T Consensus 259 -ErAHmGmFTELaILYsKY~-Pe---KlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKFK-PQ---KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSSC-TT---HHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CchhHHHHHHHHHHHHhcC-HH---HHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 1345666777777776653 22 22222221 12111 12236666666666666665543
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=58.95 E-value=57 Score=28.42 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYN-IKGT-------PEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
++-.-+..+...|.++.|.-+.+.+.... ..++ ..++..+.+++...+++..|...|++.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33444566667777777777666543321 1222 1244555666777777777777777643
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=58.32 E-value=1.5e+02 Score=29.27 Aligned_cols=131 Identities=12% Similarity=0.048 Sum_probs=76.4
Q ss_pred hHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHh
Q 005127 28 QLHSYNRLIRQGRI---SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (713)
Q Consensus 28 ~~~~~~~L~~~g~~---~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (713)
.+.-...-+..|++ =||.+.++.+.. .+.+.+++++|++++-. -...+.+
T Consensus 15 ~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~----------------Ry~~~k~y~eAidLL~~-----------GA~~ll~ 67 (336)
T 3lpz_A 15 IIARLQRRIAEGQPEEQYEAAQETRLVAA----------------RYSKQGNWAAAVDILAS-----------VSQTLLR 67 (336)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHH-----------HHHHHHH
T ss_pred HHHHHHHHHhCCCCccccHHHHHHHHHHH----------------HHHhhcCHHHHHHHHHH-----------HHHHHHH
Confidence 34444455678888 777776665543 24456778888776432 1223455
Q ss_pred CCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHHH----CC--CCCCHHHHHHHHHHHH
Q 005127 105 SKDSEGAFQVL----RLVQEAGLKADCKLYTTLITTCAKSGKVDAM-FEVFHEMVN----AG--IEPNVHTYGALIDGCA 173 (713)
Q Consensus 105 ~g~~~~A~~l~----~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A-~~~~~~m~~----~g--~~~~~~~~~~li~~~~ 173 (713)
.|+...|-++- +-..+.++++|......|+..+.....-+-. .++.+++++ .| ..-|......+...|.
T Consensus 68 ~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~ 147 (336)
T 3lpz_A 68 SGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYV 147 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 56666555544 5555678888888888888877766532211 222222221 12 2335556666667777
Q ss_pred HcCCHHHHHHHH
Q 005127 174 KAGQVAKAFGAY 185 (713)
Q Consensus 174 ~~g~~~~A~~l~ 185 (713)
+.+++.+|..-|
T Consensus 148 ~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 148 EEGEFEAAEKHL 159 (336)
T ss_dssp HTTCHHHHHHHH
T ss_pred ccCCHHHHHHHH
Confidence 777777776665
No 258
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.43 E-value=1.4e+02 Score=29.65 Aligned_cols=77 Identities=12% Similarity=0.174 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD--VEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 453 (713)
..+.++.=|...|+.+||.+.++++..-.+. -.+....+..+.-+.++ .+...+++..+.+.|+-+.......+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3577888899999999999999998632111 13445555666666543 45677888888888777666655555444
No 259
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.59 E-value=22 Score=32.80 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=11.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHCC
Q 005127 135 TTCAKSGKVDAMFEVFHEMVNAG 157 (713)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g 157 (713)
...++.|+.+....+++.+.+.|
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 33444555555555555444444
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.37 E-value=56 Score=33.67 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=5.5
Q ss_pred cCCHHHHHHHHHH
Q 005127 317 AGKVEAAFEILQE 329 (713)
Q Consensus 317 ~g~~~~a~~~~~~ 329 (713)
.+++..|...|-+
T Consensus 221 ~r~f~~Aa~~f~e 233 (429)
T 4b4t_R 221 VRNFKEAAKLLVD 233 (429)
T ss_dssp TSCHHHHHHHHHH
T ss_pred hChHHHHHHHHHH
Confidence 3444444444433
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.02 E-value=18 Score=32.66 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=43.7
Q ss_pred CcchhHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC
Q 005127 24 DVSEQLHSYNRLIRQ---GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (713)
Q Consensus 24 ~~~~~~~~~~~L~~~---g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (713)
+..-++..|=.+++. +...++.++|..|..+|+-...+.++...+..+...|++.+|..+|+..
T Consensus 75 ND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 75 NDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445677777777753 4477888888888888876666666666666666666666666666543
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=54.23 E-value=2.4e+02 Score=30.54 Aligned_cols=355 Identities=10% Similarity=0.017 Sum_probs=186.7
Q ss_pred CCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHH-----------------HHHHHhhHHHHHHHHHh
Q 005127 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF-----------------FNVCKSQKAIKEAFRFF 84 (713)
Q Consensus 22 ~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l-----------------~~~~~~~~~~~~A~~~~ 84 (713)
|.+..-.+..+.++...|+-.+|......+...|...+ ..+..++ +......|+...|..+.
T Consensus 99 p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p-~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~ 177 (618)
T 1qsa_A 99 PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP-NACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLA 177 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC-THHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55666777888888888988888887777776653211 1111111 12222334455555555
Q ss_pred hhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005127 85 KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL---YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (713)
Q Consensus 85 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (713)
..++.........++.....- ..+..... . +.++... +...+.-+.+ .+.+.|...|....+.. ..+
T Consensus 178 ~~l~~~~~~~a~~~~al~~~p---~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~ 247 (618)
T 1qsa_A 178 GQMPADYQTIASAIISLANNP---NTVLTFAR---T--TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLN 247 (618)
T ss_dssp HTCCGGGHHHHHHHHHHHHCG---GGHHHHHH---H--SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCC
T ss_pred HhCCHHHHHHHHHHHHHHhCh---HhHHHHHh---c--cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCC
Confidence 555333222333334333322 22222111 1 1333222 2222333333 37789999998887543 234
Q ss_pred HHHHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHH
Q 005127 162 VHTYGALIDGC----AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (713)
Q Consensus 162 ~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~ 237 (713)
......+-... ...+...++...+....... ++.....-.+....+.|+++.|.+.|..|.... .......
T Consensus 248 ~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~---~~~~r~~ 322 (618)
T 1qsa_A 248 EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA---KEKDEWR 322 (618)
T ss_dssp HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG---GGSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc---cccHhHH
Confidence 43333333333 33443556666776655442 344444445555567799999999999886421 1123333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHH---HHHHH
Q 005127 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVF---LSALI 311 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t---~~~li 311 (713)
--+..++...|+.++|..+|..+.... +|-.++.+ .+.|..-. . ....+.+ .... -...+
T Consensus 323 YW~~ra~~~~g~~~~a~~~~~~~a~~~------~fYg~lAa-~~Lg~~~~-~------~~~~~~~~~~~~~~~~~~~~r~ 388 (618)
T 1qsa_A 323 YWQADLLLERGREAEAKEILHQLMQQR------GFYPMVAA-QRIGEEYE-L------KIDKAPQNVDSALTQGPEMARV 388 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC------SHHHHHHH-HHTTCCCC-C------CCCCCCSCCCCHHHHSHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCC------ChHHHHHH-HHcCCCCC-C------CCCCCChhHHhhhccChHHHHH
Confidence 345567788899999999999887531 23222221 12221100 0 0000101 0111 11234
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhC
Q 005127 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL----KPTVSTMNALITALCDG 387 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~----~p~~~~~~~li~~~~~~ 387 (713)
..+...|....|...+..+.+.. +..-...+.......|..+.+..........+. -| ..|..+|..+++.
T Consensus 389 ~~L~~~g~~~~a~~ew~~~~~~~---~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P--~~y~~~i~~~a~~ 463 (618)
T 1qsa_A 389 RELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP--LAYNDLFKRYTSG 463 (618)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC--CTTHHHHHHHHTT
T ss_pred HHHHHCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC--cchHHHHHHHHHH
Confidence 45677899999988888777642 333344555556678888877766544332110 11 1366677777776
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHH
Q 005127 388 DQLPKTMEVLSDMKSLGLCPNTIT 411 (713)
Q Consensus 388 g~~~~A~~l~~~m~~~g~~p~~~t 411 (713)
-.++.++-.---..++++.|+.++
T Consensus 464 ~gv~~~ll~Ai~~~ES~f~p~a~S 487 (618)
T 1qsa_A 464 KEIPQSYAMAIARQESAWNPKVKS 487 (618)
T ss_dssp SSSCHHHHHHHHHHHHTTCTTCBC
T ss_pred cCCCHHHHHHHHHHhCCCCCCCcC
Confidence 666665544334556777776544
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.27 E-value=74 Score=32.74 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=11.1
Q ss_pred hCCChhHHHHHHHHHHH
Q 005127 386 DGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 386 ~~g~~~~A~~l~~~m~~ 402 (713)
..+++.+|.+.|-+...
T Consensus 220 ~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 220 AVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp GTSCHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHhc
Confidence 45677777777766543
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=50.29 E-value=1.1e+02 Score=25.47 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHhCCCh---hHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005127 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (713)
Q Consensus 371 ~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (713)
.|+..|--.+..++.+.... .+++.++++..+.+ | ....+--+.-++.+.|++++|+++.+.+.+ ++|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 45665555556666665543 46777787777654 4 233444556788888888888888888876 567655
Q ss_pred HHHHHHHH
Q 005127 446 MFKCIIGM 453 (713)
Q Consensus 446 ~~~~li~~ 453 (713)
-...|-.+
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444443
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=50.17 E-value=1.1e+02 Score=26.70 Aligned_cols=57 Identities=5% Similarity=-0.018 Sum_probs=36.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005127 99 MSVCASSKDSEGAFQVLRLVQEAG-LKAD-------CKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g-~~pd-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (713)
++.+...+.++.|+-+.+.+.... ..|+ ..++..+.+++...+++..|...|++..+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 555666777777776666544321 1223 12556667778888888888888887543
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.95 E-value=1.5e+02 Score=26.77 Aligned_cols=55 Identities=5% Similarity=0.064 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005127 106 KDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 160 (713)
+....+..+|..|...|+.-. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666666665443 3345555666666666666666666666655555
No 267
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.13 E-value=2.3e+02 Score=28.20 Aligned_cols=70 Identities=7% Similarity=0.060 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCCHHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ--LPKTMEVLSDMKSLGLCPNTIT 411 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t 411 (713)
..+.++.=|...|+.++|.+.++++....+. ......++..++-+.++ .+...+++..+...|+-+....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4678899999999999999999999732111 13345556666655433 3457778888877766544433
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=46.99 E-value=1.2e+02 Score=25.15 Aligned_cols=72 Identities=6% Similarity=-0.057 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005127 336 SVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (713)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (713)
.|+..+--.+..++.+..+ ..+++.+++++.+.+.......+-.|.-|+.+.|++++|.+..+.+.+ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 3444444444455555544 334566666655433111233444555566666666666666666665 35543
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.56 E-value=17 Score=31.24 Aligned_cols=40 Identities=8% Similarity=-0.081 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 005127 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 128 (713)
..-...|......+-..|++.+|.++|+.-++++-.|-..
T Consensus 98 ~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 98 TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3445567777777777888888888888888777776443
No 270
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=45.09 E-value=0.03 Score=57.80 Aligned_cols=261 Identities=12% Similarity=0.129 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (713)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 207 (713)
.+|..|..+....+++.+|++-|-+. -|...|..+|....+.|.+++-+..+...++..- +...=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 35777777777777777776654222 2555677777777778887777777766555422 333345677778
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
++.+++.+-.+++ -.||..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++..
T Consensus 127 Ak~~rL~elEefl---------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 127 AKTNRLAELEEFI---------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HTSCSSSTTTSTT---------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HhhCcHHHHHHHH---------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 8877765533322 135655666677777777777777766655433 2334455666677766
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005127 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 288 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
|.+.-++ .-+..||.-+-.+|...+.+..|.-.--.+.-.. .-...|+..|-+.|.+++-+.+++.-..
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 6554332 1255789999999999998877654433333221 1123466778899999999999988763
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (713)
Q Consensus 368 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (713)
.. ......|+-|.-.|++- ++++-.+.++..-. +.| .--+|.+|.....|.++.-++.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHh
Confidence 22 45778899998888876 45555554433211 111 1236677777777777766554
No 271
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.45 E-value=1.8e+02 Score=28.21 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD--VEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~ 452 (713)
.+.++.-|...|+.+||.+.++++..-.+. ..+....+..+.-+.++ .+....++..+.+.|+-+.......+-.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~ 245 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYER 245 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 566788888889999999999888631111 13444555566666543 4556788888887776665555444433
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=44.38 E-value=2.1e+02 Score=27.07 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=22.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005127 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (713)
+.|++++|+.....-++.. +-|...-..|+..+|-.|+++.|.+-++..
T Consensus 9 ~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444555554444444332 333444444445555555555555444443
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.59 E-value=2.5e+02 Score=27.62 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHhCCCCCCHHHHHHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY----GIMRSKNVKPDRVVFNALI 204 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~pd~~~~~~li 204 (713)
+|.++..=|.+.+++++|.+++..-. ..+.+.|+...|-++- +-+.+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455666777888888887754432 2233445554443333 4444556667766655555
Q ss_pred HHHHhc
Q 005127 205 TACGQS 210 (713)
Q Consensus 205 ~~~~~~ 210 (713)
..+...
T Consensus 102 ~L~~~~ 107 (336)
T 3lpz_A 102 GCLRLF 107 (336)
T ss_dssp HHHTTS
T ss_pred HHHHhC
Confidence 554443
No 274
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=40.15 E-value=2.7e+02 Score=27.05 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=77.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCC
Q 005127 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (713)
Q Consensus 27 ~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 106 (713)
..+.....-+..|++=||.+.++.+.. .+.+.+++++|++++.. -...+.+.|
T Consensus 15 r~l~rl~~~I~~G~yYEAhQ~~Rtl~~----------------Ry~~~~~~~eAidlL~~-----------ga~~ll~~~ 67 (312)
T 2wpv_A 15 KTLQRFENKIKAGDYYEAHQTLRTIAN----------------RYVRSKSYEHAIELISQ-----------GALSFLKAK 67 (312)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHH-----------HHHHHHHTT
T ss_pred HHHHHHHHHhhccChHHHHHHHHHHHH----------------HHHHhcCHHHHHHHHHH-----------HHHHHHHCC
Confidence 333444445567777777777665543 23445667777776432 122345566
Q ss_pred ChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHHc
Q 005127 107 DSEGAFQV----LRLVQEAGLKADCKLYTTLITTCAKSGKVD-AMFEVFHEMV----NAG--IEPNVHTYGALIDGCAKA 175 (713)
Q Consensus 107 ~~~~A~~l----~~~m~~~g~~pd~~~~~~li~~~~~~g~~~-~A~~~~~~m~----~~g--~~~~~~~~~~li~~~~~~ 175 (713)
+...|-++ .+-..+.++++|......++..+.....-+ .=.++.+++. +.| ..-|......+...|.+.
T Consensus 68 Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e 147 (312)
T 2wpv_A 68 QGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEG 147 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhc
Confidence 66665554 444556688888888888887776643222 1123333333 222 123666777777777777
Q ss_pred CCHHHHHHHHH
Q 005127 176 GQVAKAFGAYG 186 (713)
Q Consensus 176 g~~~~A~~l~~ 186 (713)
+++.+|...|-
T Consensus 148 ~~~~~A~~H~i 158 (312)
T 2wpv_A 148 DFVYEAERYFM 158 (312)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77777776654
No 275
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=39.62 E-value=1.7e+02 Score=26.21 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005127 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (713)
Q Consensus 282 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 318 (713)
..+++.|+-.+-+|.+.| .|..+.=..++-+....|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 356677777777777777 554444444444444443
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=39.28 E-value=3.2e+02 Score=27.60 Aligned_cols=231 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHH--
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKG----TPEVYTIAINCCSQ-TGDWEFACSVYDDMTKKGVIPDEVFLS-- 308 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~-- 308 (713)
....|...|.+.|+.++...++......=... ....-..+|+.+.. .+..+.-.++..+..+....-....+.
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHH
Q 005127 309 ---ALIDFAGHAGKVEAAFEILQEAKNQGISVG-----IISYSSLMGACSNAKNWQKALELYEHMKSIK----LKPTVST 376 (713)
Q Consensus 309 ---~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----~~p~~~~ 376 (713)
-++..|...|++.+|..++..+.+.--..| ..++-.-+.+|...+++.++...+....... +.|....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Q ss_pred HHHHHHH--HH-hCCChhHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005127 377 MNALITA--LC-DGDQLPKTMEVLSDMKSLGLCPNTITYSI-----LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (713)
Q Consensus 377 ~~~li~~--~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-----ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 448 (713)
.--+..| +. ..+++.+|...|-+..+.=-......+.. ++.+.......+-..-+-......-..|+...+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~ 260 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHH
Q ss_pred HHHHHHHh-hHHHHHHHHH
Q 005127 449 CIIGMCSR-RYEKARTLNE 466 (713)
Q Consensus 449 ~li~~~~r-~~~~a~~l~~ 466 (713)
.|+.++.. .+.+...+.+
T Consensus 261 ~L~~a~~~~dl~~f~~iL~ 279 (394)
T 3txn_A 261 SVAEASHKRSLADFQAALK 279 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.57 E-value=34 Score=29.82 Aligned_cols=39 Identities=3% Similarity=-0.111 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 128 (713)
.-...|......+-..|++.+|.++|+.-++++-.|-..
T Consensus 94 ~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 344455555566666677777777777777776666443
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.64 E-value=52 Score=30.24 Aligned_cols=59 Identities=12% Similarity=0.217 Sum_probs=30.2
Q ss_pred cchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhh
Q 005127 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85 (713)
Q Consensus 25 ~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 85 (713)
..-++..|=.+++. .+++.++|..|..+|+-...+.++......+...|++.+|..+|+
T Consensus 116 D~RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 116 DVRYLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp CHHHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556666555542 346667777777666544444444444444444444444444443
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.72 E-value=1.8e+02 Score=23.96 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=10.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 005127 239 ALMKACANAGQVDRAREVYKMI 260 (713)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~m 260 (713)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555444
No 280
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.69 E-value=2.2e+02 Score=24.95 Aligned_cols=112 Identities=12% Similarity=0.051 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (713)
.+|...-...+.++.+.+.......+.+ +.. .+|..+-...+.+++..+..+.. ..+..+.. .++..+-...
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a 96 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSA 96 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHH
Confidence 4455544444555555444322222222 221 34555555555555555543322 22222222 3455555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005127 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (713)
Q Consensus 169 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 212 (713)
+.++.+.++.+ +...+..+.. .+|..+-...+.++++.++
T Consensus 97 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 97 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCC
Confidence 55555555432 2222222222 2344444444444544444
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.25 E-value=48 Score=30.32 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=44.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHH
Q 005127 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT--YGALIDGCAK 174 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~ 174 (713)
+...+..|+.+....+++.+.+.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 445566788887777777776666544322 1123344455666654 3444445554443211 1123344456
Q ss_pred cCCHHHHHHHHHHH
Q 005127 175 AGQVAKAFGAYGIM 188 (713)
Q Consensus 175 ~g~~~~A~~l~~~m 188 (713)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 66666555555443
No 282
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.70 E-value=1.6e+02 Score=26.33 Aligned_cols=45 Identities=18% Similarity=0.014 Sum_probs=28.4
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005127 274 IAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (713)
Q Consensus 274 ~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 318 (713)
-+|+++.| ..+++.|+-.+-+|++.|..|..+.=..++-+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34555543 4678888888888888887765555455555544444
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.69 E-value=2.5e+02 Score=25.91 Aligned_cols=27 Identities=11% Similarity=-0.122 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 269 PEVYTIAINCCSQTGDWEFACSVYDDM 295 (713)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (713)
+..-...+..+.+.|+.++|..+|=+.
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 344444455555555566655555443
No 284
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=34.04 E-value=2.1e+02 Score=24.08 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005127 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (713)
Q Consensus 371 ~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 447 (713)
.|+..+--.+..++.+.... .+++.++++....+-.-.....--+.-++.+.|++++|+++.+.+.+ ++|+..-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 45666555566666666543 46777777776643111223333455678888888888888888887 56765444
Q ss_pred HHHH
Q 005127 448 KCII 451 (713)
Q Consensus 448 ~~li 451 (713)
..|-
T Consensus 114 ~~Lk 117 (144)
T 1y8m_A 114 GALK 117 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 285
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=33.28 E-value=2.2e+02 Score=24.00 Aligned_cols=72 Identities=6% Similarity=-0.057 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005127 336 SVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (713)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (713)
.|+..+--.+..++.+..+ ..++..+++.+.+.+........-.|.-++.+.|++++|.+..+.+.+ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4555555555566666554 345666777666542111233444456677778888888887777776 46654
No 286
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=32.70 E-value=3.5e+02 Score=26.21 Aligned_cols=114 Identities=15% Similarity=0.086 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG----AYGIMRSKNVKPDRVVFNALI 204 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~----l~~~m~~~g~~pd~~~~~~li 204 (713)
.|.++..=|.+.+++++|.+++..-. ..+.+.|+...|-+ +.+-..+.++++|......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45566666777888888887765432 22344566544444 344455567777777666666
Q ss_pred HHHHhcCCHH-HHHHHHHHhh----hCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005127 205 TACGQSGAVD-RAFDVLAEMN----AEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (713)
Q Consensus 205 ~~~~~~g~~~-~A~~~~~~m~----~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~ 257 (713)
..+.....-+ .=.++++++. ..+..-.-|......+...|.+.|++.+|+..|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6554432111 0111222111 110011234555666666777777777766655
No 287
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=32.57 E-value=6.1e+02 Score=28.95 Aligned_cols=84 Identities=13% Similarity=0.273 Sum_probs=50.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCc------------h-HHHHHHHHHHHH--------hhHHHHHHHHHhhhCCCCCH
Q 005127 34 RLIRQGRISECIDLLEDMERKGLLDM------------D-KVYHARFFNVCK--------SQKAIKEAFRFFKLVPNPTL 92 (713)
Q Consensus 34 ~L~~~g~~~~A~~l~~~m~~~~~~~~------------~-~~~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~~ 92 (713)
..++.+.+.+|+.+.-+..+.+.++. + ..+...+...+. +..-+.-++++|...+.|+
T Consensus 154 ~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~d- 232 (963)
T 4ady_A 154 KCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCD- 232 (963)
T ss_dssp HHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCC-
T ss_pred HHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCchh-
Confidence 34489999999888766544332110 0 112222222221 1233456677777776555
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQE 120 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 120 (713)
|..+++...+.++.+.+.++|..+..
T Consensus 233 --y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 --YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566777778899999999988874
No 288
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=32.26 E-value=5.1e+02 Score=27.93 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005127 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (713)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 137 (713)
|....+.........+.+++...+.+|.. ++.+...-.....+....|+..+|......+-..| ......+..|+..+
T Consensus 69 p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~ 146 (618)
T 1qsa_A 69 PPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVW 146 (618)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHH
Confidence 33334444444445555666766666655 34455444455566666677666666666665555 23334555666666
Q ss_pred HHcCCh
Q 005127 138 AKSGKV 143 (713)
Q Consensus 138 ~~~g~~ 143 (713)
.+.|.+
T Consensus 147 ~~~g~l 152 (618)
T 1qsa_A 147 RASGKQ 152 (618)
T ss_dssp HHTTCS
T ss_pred HHCCCC
Confidence 655544
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.01 E-value=77 Score=30.90 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCH
Q 005127 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDE 304 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 304 (713)
...++.-|...|+.++|.+.++++....+. ...++..+..++-+.++ .+....++..+...|+.+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 456778888889999998888887533211 13445555555555433 45566777777777665433
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.89 E-value=1.5e+02 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 005127 238 GALMKACANAGQVDRAREVYKMI 260 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m 260 (713)
..++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33444454555555555555444
No 291
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=31.33 E-value=63 Score=30.30 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=13.3
Q ss_pred hCCChhHHHHHHHHHHHCCCCCC
Q 005127 386 DGDQLPKTMEVLSDMKSLGLCPN 408 (713)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~ 408 (713)
..+......++++.+.+.|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HccccchHHHHHHHHHHcCCCCC
Confidence 34555445566666666666554
No 292
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.32 E-value=2.1e+02 Score=25.83 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=27.6
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005127 274 IAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (713)
Q Consensus 274 ~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 318 (713)
-+|+++.| ..+++.|+-.+-+|++.|..|....=..++-+....|
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34555543 4677788888888888777665555455555544444
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.14 E-value=2.5e+02 Score=25.94 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=45.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 99 MSVCASSKDSEGAFQVLRLVQEA--GLKA----DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~--g~~p----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (713)
++.+....++++|..++++..+. ++++ +.......+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 56677778888888777665432 2221 111122222222222223334444444422 33455555566677
Q ss_pred HHcCCHHHHHHHHHHHH
Q 005127 173 AKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~ 189 (713)
.+.|+-++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77777777777776554
No 294
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.31 E-value=2.8e+02 Score=24.38 Aligned_cols=80 Identities=15% Similarity=0.067 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005127 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (713)
Q Consensus 125 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 204 (713)
+|..+-...+.++.+.++.+. ...+..+.. .+|..+-...+.++.+.++.+ +...+..+.. .++..+-...+
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 133 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAA 133 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHH
Confidence 344444455555555554322 222222222 345555555555555555432 2223333322 23444444444
Q ss_pred HHHHhcCC
Q 005127 205 TACGQSGA 212 (713)
Q Consensus 205 ~~~~~~g~ 212 (713)
.++++.|.
T Consensus 134 ~aL~~~~~ 141 (211)
T 3ltm_A 134 FALGEIGD 141 (211)
T ss_dssp HHHHHHCC
T ss_pred HHHHHcCC
Confidence 45554444
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.24 E-value=2.6e+02 Score=23.85 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005127 111 AFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (713)
Q Consensus 111 A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 160 (713)
+.++|..|..+|+... ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555544332 2334444444555555555555555555444444
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.13 E-value=2.3e+02 Score=24.07 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD--VEVGLMLLSQAKEDGVIPNLVMFKCI 450 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~l 450 (713)
..+.++.-|...|+.++|.+.++++....+. ..+....+..++-+.+. .+....++..+.+.|+-+.......+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf 86 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 86 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Confidence 3456677777777777777777776421111 23344455556655432 34566777777766665554444333
No 297
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=30.08 E-value=6.7e+02 Score=28.64 Aligned_cols=153 Identities=8% Similarity=0.063 Sum_probs=74.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCC
Q 005127 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLS--ALIDFAGHAGK 319 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~li~~~~~~g~ 319 (713)
+.-.|+-+....++..+.+.. +..+...+.-+ +...|+.+.+..+.+.+.... .|....-. ++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 445566666666666555422 22233323333 335567766666666665531 12111111 22334556667
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh-hHHHHHHH
Q 005127 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTMEVLS 398 (713)
Q Consensus 320 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~ 398 (713)
.....+++..+.... ..++.-...+.-++...|+.+.+.++++.+.+.+ .|.+..-.++.-|....|.. .+|++++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 655555666665532 1222222222223334555555666665555433 34444444444455555544 46667777
Q ss_pred HHHH
Q 005127 399 DMKS 402 (713)
Q Consensus 399 ~m~~ 402 (713)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 7653
No 298
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=30.03 E-value=31 Score=32.62 Aligned_cols=9 Identities=11% Similarity=0.117 Sum_probs=3.8
Q ss_pred HHHHhCCCh
Q 005127 100 SVCASSKDS 108 (713)
Q Consensus 100 ~~~~~~g~~ 108 (713)
...++.|+.
T Consensus 10 ~~A~~~g~~ 18 (285)
T 1wdy_A 10 IKAVQNEDV 18 (285)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHcCCH
Confidence 333444444
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.01 E-value=2.4e+02 Score=23.13 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD--VEVGLMLLSQAKEDGVIPNLVMFKCI 450 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~l 450 (713)
.+.++.-|...|+.++|.+.++++....+. ..+....+..++-+.+. .+....++..+.+.|+-+.......+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf 84 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 84 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Confidence 455666777777777777777776421111 22344445555555432 35566677777766655554443333
No 300
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.42 E-value=1e+02 Score=23.97 Aligned_cols=62 Identities=8% Similarity=0.072 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHh--hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHH
Q 005127 46 DLLEDMERKGLLDMDKVYHARFFNVCKS--QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (713)
Q Consensus 46 ~l~~~m~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 112 (713)
.+++.+...|++..... -.+-.. ....+.|.++++.++.....+|..++.++...++..-|.
T Consensus 25 ~vld~L~~~~vlt~~~~-----e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHMI-----EDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSSCHHHH-----HHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCCCHHHH-----HHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 36777777776643221 111112 246788888888888877788888888887766655443
No 301
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.21 E-value=2.1e+02 Score=21.79 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHH
Q 005127 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 44 A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 111 (713)
.-.+++.+...|++.....- .+-......+.|.++++.++.....+|..++.++...+...-|
T Consensus 24 v~~lld~L~~~~vlt~~~~e-----~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEE-----KVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHH-----HHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHH-----HHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 44677788888876543211 1112346678888999888888888888888888877654433
No 302
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.61 E-value=1.2e+02 Score=29.43 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=50.5
Q ss_pred HHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCChhHHHHHHHH
Q 005127 325 EILQEAKNQGISVGII--SYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSD 399 (713)
Q Consensus 325 ~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (713)
.+.+.+.+.|..++.. ...+.+...+..|..+....+++. .|..+ |..-++.|..+ ++.|+.+ +.+-
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHH
Confidence 3444456666554321 112334455667777666555432 12222 22223344333 3455543 4444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005127 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (713)
Q Consensus 400 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 444 (713)
+++.|..||..+ .+...++.|..+ +.+.+++.|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 566777777554 233334556654 44555677777764
No 303
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.92 E-value=28 Score=31.85 Aligned_cols=221 Identities=14% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 005127 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (713)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 283 (713)
+...++.|+.+....+++.-. .+......-.+.+...++.|+.+-+..+++.-.......+..-++.+..+.....
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGY----DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred HHHHHHcCChHHHHHHHHcCC----CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 005127 284 DWEFACSVYDDMTKKGVIPDEVFLS--ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS--SLMGACSNAKNWQKAL 359 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 359 (713)
.++++.+.+.|..++..... +.+...+..|..+ +++.+.+.|..++..... +.+...+..+......
T Consensus 89 -----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~ 159 (240)
T 3eu9_A 89 -----LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPT 159 (240)
T ss_dssp -----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred -----HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHH
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS--ILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 360 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
+++.+....--..+...-.+.+...+..|+.+ +.+.+.+.|..|+..... +.+....+.|..+-+..+++...+
T Consensus 160 ~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT----VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHH----HHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHhcCCCcchhhccCCCcHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Q ss_pred CCCC
Q 005127 438 DGVI 441 (713)
Q Consensus 438 ~g~~ 441 (713)
.++.
T Consensus 236 ~~~~ 239 (240)
T 3eu9_A 236 KGYD 239 (240)
T ss_dssp ----
T ss_pred cCcC
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.66 E-value=51 Score=29.16 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=7.4
Q ss_pred HHhcCCHHHHHHHHH
Q 005127 207 CGQSGAVDRAFDVLA 221 (713)
Q Consensus 207 ~~~~g~~~~A~~~~~ 221 (713)
.+..|+.+-+..+++
T Consensus 79 A~~~~~~~~~~~Ll~ 93 (201)
T 3hra_A 79 AGAQGRTEILAYMLK 93 (201)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 344555555544443
No 305
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.16 E-value=3.5e+02 Score=23.36 Aligned_cols=51 Identities=12% Similarity=0.280 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005127 111 AFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (713)
Q Consensus 111 A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (713)
+..+|..|..+|+... ...|......+-..|++.+|.++|..-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4556666666665433 33455555555566666666666666666555553
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.91 E-value=1.5e+02 Score=31.15 Aligned_cols=18 Identities=6% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 005127 35 LIRQGRISECIDLLEDME 52 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~ 52 (713)
|+.++++++|.++-..+.
T Consensus 146 L~d~k~~~~~~~~~~~~~ 163 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVV 163 (523)
T ss_dssp ------------------
T ss_pred HhccccHHHHHHHHHHHH
Confidence 337888888887766554
No 307
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.49 E-value=55 Score=33.56 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=8.3
Q ss_pred HHHHHcCCHHHHHHHHH
Q 005127 170 DGCAKAGQVAKAFGAYG 186 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~ 186 (713)
...++.|+.+-+..+++
T Consensus 118 ~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 118 HIAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33445566555444443
No 308
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=22.09 E-value=1.3e+02 Score=22.98 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=25.1
Q ss_pred ccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEE
Q 005127 582 RKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNIL 616 (713)
Q Consensus 582 ~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~v 616 (713)
++++.....|-++..+++-...++..|+-||+.++
T Consensus 7 ~~~~~rgdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 7 HGSSTRGDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ccccccccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 45556666777777788888888999999998654
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.82 E-value=3.3e+02 Score=22.70 Aligned_cols=39 Identities=8% Similarity=-0.098 Sum_probs=15.8
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005127 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
.+...+..-.|.++++.+.+.+...+..|..--++.+..
T Consensus 30 ~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 30 YLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp HHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 333333444445555555444333333333333333333
No 310
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.42 E-value=1.1e+02 Score=27.65 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=6.5
Q ss_pred HHHcCCHHHHHHHHH
Q 005127 244 CANAGQVDRAREVYK 258 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~ 258 (713)
.++.|+++....++.
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 344444444444443
No 311
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=20.13 E-value=4.4e+02 Score=23.03 Aligned_cols=113 Identities=18% Similarity=0.097 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005127 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (713)
Q Consensus 124 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 203 (713)
.+|..+-...+..+.+.+..+ +...+..+.. .+|..+-...+.++.+.+..+ +...+..+.. .+|..+-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 345555555566666665533 2333333332 345555555666666665532 3333333332 2455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCH
Q 005127 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (713)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~ 250 (713)
+.++++.++.+ +...+..+.. .++..+-...+.++.+.|+.
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALK-----DEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT-----CSSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHhCcHH-HHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCH
Confidence 55666655533 2233333322 34444444555555555543
Done!