BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005128
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CXK|A Chain A, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|B Chain B, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|C Chain C, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|D Chain D, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|E Chain E, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
Length = 95
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 441 IRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS 500
+ D+SP+W+Y KVLI G + + + C+F +I VPA ++ V+RC P+
Sbjct: 9 VTDYSPEWSYPEGGVKVLITGPWQ-----EASNNYSCLFDQISVPASLIQPGVLRCYCPA 63
Query: 501 HAAGRVPFYITGSNRLACSEVREFEYREKPSKA 533
H G V + +N++ + V FEY+ PS
Sbjct: 64 HDTGLVTLQVAFNNQIISNSVV-FEYKSGPSSG 95
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
E G PN D G+ +H AA G++ ++ +++ G PN +D+ GRT LH+A+ G E
Sbjct: 25 ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKE 84
Query: 693 QLRVRL 698
+++ L
Sbjct: 85 IVKLLL 90
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G PN D G+ +H AA G++ ++ +++ G PN +D+ GRT LH+A+ G E +
Sbjct: 60 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIV 119
Query: 695 RVRL 698
++ L
Sbjct: 120 KLLL 123
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G PN D G+ +H AA G++ ++ +++ G PN D+ GRT L A G+ E +
Sbjct: 93 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIV 152
Query: 695 RV 696
++
Sbjct: 153 KL 154
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 652 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRL 698
AA G + ++ ++ G PN D+ GRT LH+A+ G E +++ L
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLL 57
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G PN D G+ +HLAA G++ ++ +++ G PN +D+ G+T LH A+ G E +
Sbjct: 60 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVV 119
Query: 695 RVRL 698
++ L
Sbjct: 120 KLLL 123
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
E G N D G+ +HLAA G++ ++ +++ G PN +D+ G+T LH A+ G E
Sbjct: 25 ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKE 84
Query: 693 QLRVRL 698
+++ L
Sbjct: 85 VVKLLL 90
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G PN D G+ +HLAA G++ ++ +++ G PN D+ GRT L A G+ E +
Sbjct: 93 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVV 152
Query: 695 RV 696
++
Sbjct: 153 KL 154
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Query: 613 KLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPN 672
++++ LLRN G N +D G +HLAA+LG+ + ++ G N
Sbjct: 49 EIVEVLLRN-------------GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 673 FRDARGRTALHWASYFGSWEQLRVRLR 699
+DA G T L+ A+Y+G E + V L+
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G+ +H+AAA+G+ + ++ G N D G T LH A+ G E +
Sbjct: 25 GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIV 84
Query: 695 RVRLR 699
V L+
Sbjct: 85 EVLLK 89
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 652 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRLR 699
AA G + +R ++A G N D GRT LH A+ G E + V LR
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR 56
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 627 LVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 686
+V ++ + G P++ID G +HLAA G+ + +IA G + D G T L WA+
Sbjct: 91 MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA 150
Query: 687 Y 687
Y
Sbjct: 151 Y 151
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N +DD G +HLAA G+ + ++ G N RD GRT LH A+ G E +
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIV 96
Query: 695 RVRL 698
V L
Sbjct: 97 EVLL 100
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 642 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRLRIQ 701
DD +H+AA G +R +I TGVSP ++ G TALH A FG + + +
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 702 HQHFL 706
H L
Sbjct: 77 EVHSL 81
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
E G N D G+ +HLAA G+ ++ ++ G N +D GRT LH A+ G E
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 693 QLRVRL 698
+++ L
Sbjct: 83 VVKLLL 88
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
E G N D G+ +HLAA G+ ++ ++ G N +D GRT LH A+ G E
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 693 QLRVRL 698
+++ L
Sbjct: 116 VVKLLL 121
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 645 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRL 698
G+ +HLAA G+ ++ ++ G N +D GRT LH A+ G E +++ L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
E G N D G+ +HLAA G+ ++ ++ G N +D GRT LH A+ G E
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 693 QLRVRL 698
+++ L
Sbjct: 83 VVKLLL 88
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 645 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRL 698
G+ +HLAA G+ ++ ++ G N +D GRT LH A+ G E +++ L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
E G N D G+ +H AA G++ ++ +I+ G N +D+ GRT LH+A+ G E
Sbjct: 25 ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKE 84
Query: 693 QLRV 696
+++
Sbjct: 85 IVKL 88
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G+ +H AA G++ ++ +I+ G N +D+ GRT LH+A+ G E +
Sbjct: 60 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV 119
Query: 695 RV 696
++
Sbjct: 120 KL 121
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G+ +H AA G++ ++ +I+ G N D+ GRT L A G+ E +
Sbjct: 93 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIV 152
Query: 695 RV 696
++
Sbjct: 153 KL 154
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N DD G +HLAAA G + ++ G N D+ G T LH A+Y G E +
Sbjct: 29 GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIV 88
Query: 695 RVRLR 699
V L+
Sbjct: 89 EVLLK 93
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
+ G N D G +HLAA G+ + ++ G N D G T LH A+ G E
Sbjct: 60 KNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLE 119
Query: 693 QLRVRLR 699
+ V L+
Sbjct: 120 IVEVLLK 126
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 652 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRLR 699
AAA G + +R ++A G N D G T LH A+ G E + V L+
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK 60
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N +DD G +HLAA G+ + ++ G N D+ GRT LH A+ G E +
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIV 96
Query: 695 RVRL 698
V L
Sbjct: 97 EVLL 100
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
+ G N +D G + LAA G+ + ++ G N D G T LH A+ FG E
Sbjct: 68 KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127
Query: 693 QLRVRLR 699
+ V L+
Sbjct: 128 IVEVLLK 134
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA G+ + ++ G N D G T L A+ FG E +
Sbjct: 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N +DD G +HLAA G+ + ++ G N D GRT LH A+ G E +
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIV 96
Query: 695 RVRL 698
V L
Sbjct: 97 EVLL 100
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 614 LIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF 673
+ Q LLRNR L ++H+G P + LAA L E + +I N
Sbjct: 99 VFQILLRNRATN-LNARMHDGTT-PLI----------LAARLAIEGMVEDLITADADINA 146
Query: 674 RDARGRTALHWASYFGSWEQLRVRL 698
D G+TALHWA+ + E + + L
Sbjct: 147 ADNSGKTALHWAAAVNNTEAVNILL 171
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N DD G+ +HLAA G+ + ++ G N D G T LH A+ +G E +
Sbjct: 37 GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA G+ + ++ G N D G T LH A+ G E +
Sbjct: 70 GADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIV 129
Query: 695 RVRLR 699
V L+
Sbjct: 130 EVLLK 134
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 652 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRLR 699
AA G + +R ++A G N D G+T LH A+ G E + V L+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK 68
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
E G N D G+ +H AA G++ ++ +I+ G N +D+ GRT LH A+ G E
Sbjct: 25 ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84
Query: 693 QLRV 696
+++
Sbjct: 85 VVKL 88
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G+ +H AA G++ ++ +I+ G N +D+ GRT LH A+ G E +
Sbjct: 60 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV 119
Query: 695 RV 696
++
Sbjct: 120 KL 121
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N DD G +HLAA +G+ + ++ G N RD G T LH A+ G E +
Sbjct: 37 GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA G+ + ++ G N +DA G T LH A+ G E +
Sbjct: 70 GADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIV 129
Query: 695 RVRLR 699
V L+
Sbjct: 130 EVLLK 134
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 645 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRV 696
G +H+AAA GY ++ +I N +D G T LH A+++G E R+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 35.8 bits (81), Expect = 0.096, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA G+ + ++ G N D G T LH A++FG E +
Sbjct: 37 GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
+ G N D G +HLAA G+ + ++ G N +D G T LH A+ G E
Sbjct: 68 KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLE 127
Query: 693 QLRVRLR 699
+ V L+
Sbjct: 128 IVEVLLK 134
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 652 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRLR 699
AA G + +R ++A G N D G T LH A+Y+G E + V L+
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK 68
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N ID G +HLAA +G+ + ++ G N D G T LH A+ G E +
Sbjct: 70 GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 695 RVRLR 699
V L+
Sbjct: 130 EVLLK 134
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA G+ + ++ G N D G T LH A+ G E +
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTAL 682
G N +D G +HLAA +G+ + ++ G N +D G+TA
Sbjct: 103 GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N +D+ G +HLAA LG+ + ++ G N D G T LH A+ G E +
Sbjct: 37 GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D+ G +HLAA G+ + ++ G + D G T LH A+Y+G E +
Sbjct: 37 GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 652 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRLR 699
AA G + +R ++A G N D G T LH A+Y G E + V L+
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLK 68
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 645 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRLR 699
G +HLAA G+ + ++ G N D+ G T LH A+ +G E + V L+
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTAL 682
+ G N +D G +HLAA GY + ++ G N +D G+TA
Sbjct: 101 KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N ID G +HLAA +G+ + ++ G N D G T LH A+ G E +
Sbjct: 70 GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 695 RVRLR 699
V L+
Sbjct: 130 EVLLK 134
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA G+ + ++ G N D G T LH A+ G E +
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTAL 682
G N +D G +HLAA +G+ + ++ G N +D G+TA
Sbjct: 103 GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D+ G +HLAA G+ + ++ G N +D G T LH A+Y G E +
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIV 129
Query: 695 RVRLR 699
V L+
Sbjct: 130 EVLLK 134
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA G+ + ++ G N D G T LH A+ G E +
Sbjct: 37 GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 627 LVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 686
LV +GG+ ++ ++ Q +HLA +R ++ G SP D G+TA H A
Sbjct: 28 LVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC 87
Query: 687 YFGSWEQLRVRL 698
S LR L
Sbjct: 88 EHRSPTCLRALL 99
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 652 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRLR 699
AA G + +R ++A G N RD G T LH A++FG E + V L+
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLK 68
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA G+ + ++ G N +D+ G T LH A+ G E +
Sbjct: 37 GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
+ G N D G +HLAA G+ + ++ G N D+ G T LH A+ G E
Sbjct: 68 KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLE 127
Query: 693 QLRVRLR 699
+ V L+
Sbjct: 128 IVEVLLK 134
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
+ G N D G +HLAAA G+ + ++ G N D G T LH A+ +G E
Sbjct: 68 KNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLE 127
Query: 693 QLRVRLR 699
+ V L+
Sbjct: 128 IVEVLLK 134
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D+ G +HLAA+ G+ + ++ G N D G T LH A+ G E +
Sbjct: 37 GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 631 IHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685
I++G N D G +HLAAA A + ++ N +D GRT LH A
Sbjct: 43 IYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 652 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRLR 699
AA G + +R ++A G N D G T LH A+YFG E + V L+
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK 68
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
+ G N D G +HLAA G+ + ++ G N D G T LH A+ G E
Sbjct: 68 KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLE 127
Query: 693 QLRVRLR 699
+ V L+
Sbjct: 128 IVEVLLK 134
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA G+ + ++ G N D+ G T LH A+ G E +
Sbjct: 37 GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 631 IHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685
I++G N D G+ +HLAA A + ++ N +D GRT LH A
Sbjct: 11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 631 IHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685
I++G N D G+ +HLAA A + ++ N +D GRT LH A
Sbjct: 43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
+ G N D G +HLAA G+ + ++ G N +D G T LH A+ G E
Sbjct: 56 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 115
Query: 693 QLRVRLR 699
+ V L+
Sbjct: 116 IVEVLLK 122
Score = 32.3 bits (72), Expect = 0.94, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA G+ + ++ G N +D G T LH A+ G E +
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 84
Query: 695 RVRLR 699
V L+
Sbjct: 85 EVLLK 89
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
+ G N D G +HLAA G+ + ++ G N +D G T LH A+ G E
Sbjct: 68 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 127
Query: 693 QLRVRLR 699
+ V L+
Sbjct: 128 IVEVLLK 134
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA G+ + ++ G N +D G T LH A+ G E +
Sbjct: 37 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 631 IHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685
I++G N D G+ +HLAA A + ++ N +D GRT LH A
Sbjct: 44 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
+ G N D G +HLAA G+ + ++ G N +D G T LH A+ G E
Sbjct: 56 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 115
Query: 693 QLRVRLR 699
+ V L+
Sbjct: 116 IVEVLLK 122
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA G+ + ++ G N +D G T LH A+ G E +
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 84
Query: 695 RVRLR 699
V L+
Sbjct: 85 EVLLK 89
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWE 692
+ G N +D G +HLAA G+ + ++ G N D G T LH A+ G E
Sbjct: 68 KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLE 127
Query: 693 QLRVRLR 699
+ V L+
Sbjct: 128 IVEVLLK 134
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA +G+ + ++ G N D G T LH A+ G E +
Sbjct: 37 GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N +D+ G +HLAA G+ + ++ G + D G T LH A+ G E +
Sbjct: 37 GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA + + ++ G N D G T LH A+ FG E +
Sbjct: 37 GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA LG+ + ++ G N GRT LH A++ E +
Sbjct: 37 GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 645 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRLRIQHQ 703
G+ ++H+A+ G ++ ++ G PN +D G T LH A G + V L +QH+
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK--VVELLLQHK 66
>pdb|1SP3|A Chain A, Crystal Structure Of Octaheme Cytochrome C From Shewanella
Oneidensis
Length = 443
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 258 IDNSSRNATSVLDQHGHQNFYVGQPSGADFITHKLTDARLASDSTIA---NIGTC----- 309
D + L H YV P+GA KL A++A + N G+C
Sbjct: 88 FDFKDKTKVDCLICHDTTGTYVKDPAGAGEPMAKLDLAKIAQNVGAPVRDNCGSCHFYGG 147
Query: 310 GERLITDIDVHAVTTSSQGASQVLLEHNFNLINNQCQNCPVPEVTVASVSQAGIKP 365
G + D+ + A+ V ++ + N N QCQNC E S + G+ P
Sbjct: 148 GGDAVKHGDLDSSMAYPDKATDVHMDSDGN--NFQCQNCHTTEKHQISGNAMGVSP 201
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 649 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRLR 699
+H+A+ +G+ ++ ++ G SPN + + T LH A+ G E + L+
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 639 NVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRL 698
N+ + G +HL A G+ +I GV + G T LH AS++G+ + V+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK--LVKF 329
Query: 699 RIQHQ 703
+QHQ
Sbjct: 330 LLQHQ 334
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 639 NVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQLRVRL 698
N D G +HLAA G+ + ++ G N D +G T LH A+ G E + V L
Sbjct: 74 NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 699 R 699
+
Sbjct: 134 K 134
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685
EGG P+ D +H AAA G + ++ S N +D G T LH A
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 642 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 686
DD G +H+AA+ G + ++ ++ G N + G T LH+A+
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685
EGG P+ D +H AAA G + ++ S N +D G T LH A
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 642 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 686
DD G +H+AA+ G + ++ ++ G N + G T LH+A+
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 642 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 686
DD G +H+AA+ G + ++ ++ G N + G T LH+A+
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 114
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685
EGG P+ D +H AAA G + ++ S N +D G T LH A
Sbjct: 127 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 642 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 686
DD G +H+AA+ G + ++ ++ G N + G T LH+A+
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 115
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685
EGG P+ D +H AAA G + ++ S N +D G T LH A
Sbjct: 128 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 631 IHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685
I++G N D G+ +HLAA A + ++ +D GRT LH A
Sbjct: 8 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 625 EWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHW 684
E + + + G N DDGG + A + ++ +++ G N RD LHW
Sbjct: 91 EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHW 150
Query: 685 ASYFGSWEQLRVRL 698
A++ G + + L
Sbjct: 151 AAFSGCVDIAEILL 164
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 614 LIQNLLRNRL--CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSP 671
LIQ N L CE+L+ + G N D G+G +H A LG+ + G
Sbjct: 239 LIQATAANSLLACEFLL----QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 672 NFRDARGRTALHWA 685
RD+ GR L A
Sbjct: 295 GARDSEGRDPLTIA 308
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G P++ D G V+H AA G+ ++ ++ N D G LH A+ G L
Sbjct: 60 GANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG---HL 116
Query: 695 RV 696
RV
Sbjct: 117 RV 118
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 614 LIQNLLRNRL--CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSP 671
LIQ N L CE+L+ + G N D G+G +H A LG+ + G
Sbjct: 239 LIQATAANSLLACEFLL----QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 672 NFRDARGRTALHWA 685
RD+ GR L A
Sbjct: 295 GARDSEGRDPLTIA 308
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 614 LIQNLLRNRL--CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSP 671
LIQ N L CE+L+ + G N D G+G +H A LG+ + G
Sbjct: 239 LIQATAANSLLACEFLL----QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 672 NFRDARGRTALHWA 685
RD+ GR L A
Sbjct: 295 GARDSEGRDPLTIA 308
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 639 NVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685
++ +D GQ +HLAA LG + + A G + G TALH A
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 639 NVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685
++ +D GQ +HLAA LG + + A G + G TALH A
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G P++ D G V+H AA G+ ++ ++ N D G LH A+ G L
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEG---HL 116
Query: 695 RV 696
RV
Sbjct: 117 RV 118
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGSWEQL 694
G N D G +HLAA + + ++ G N DA G T LH + +G E +
Sbjct: 37 GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIV 96
Query: 695 RVRLR 699
V L+
Sbjct: 97 EVLLK 101
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 627 LVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 686
LV +I P++ +D G +H A G+ ++ ++ GV+ N D+ G T LH A+
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 627 LVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 686
LV +I P++ +D G +H A G+ ++ ++ GV+ N D+ G T LH A+
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 649 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 686
+H+AA+ G+ + ++ G N +D TALHWA+
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT 108
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 620 RNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGR 679
R+ + E L+ + G NV++ G +HLAA+ G+ ++ ++ N + G
Sbjct: 51 RSAVVEMLIMR----GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106
Query: 680 TALHWASYFG 689
LH+A ++G
Sbjct: 107 VPLHYACFWG 116
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 620 RNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGR 679
R+ + E L+ + G NV++ G +HLAA+ G+ ++ ++ N + G
Sbjct: 46 RSAVVEMLIMR----GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 101
Query: 680 TALHWASYFG 689
LH+A ++G
Sbjct: 102 VPLHYACFWG 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,262,782
Number of Sequences: 62578
Number of extensions: 946649
Number of successful extensions: 2230
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2051
Number of HSP's gapped (non-prelim): 186
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)