Query 005130
Match_columns 713
No_of_seqs 899 out of 4051
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 18:32:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 8E-117 2E-121 1008.4 85.1 692 22-713 367-1060(1060)
2 PLN03077 Protein ECB2; Provisi 100.0 4.8E-81 1E-85 729.1 49.3 583 27-650 150-819 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.7E-76 3.6E-81 674.9 47.9 519 89-650 120-657 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 4.8E-66 1E-70 602.9 48.6 518 29-570 55-657 (857)
5 PLN03218 maturation of RBCL 1; 100.0 1.3E-61 2.8E-66 554.7 59.5 465 30-503 411-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.7E-56 3.6E-61 510.6 49.3 403 36-455 98-505 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.3E-24 9.4E-29 254.3 63.0 509 34-564 338-866 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.4E-24 9.4E-29 254.3 62.6 512 30-562 368-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 5.3E-20 1.1E-24 196.9 34.9 302 101-410 44-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 3.9E-19 8.4E-24 190.2 36.9 303 134-445 42-354 (389)
11 KOG4626 O-linked N-acetylgluco 99.8 4.2E-18 9E-23 173.6 33.3 421 28-471 51-479 (966)
12 PRK11447 cellulose synthase su 99.8 9.6E-17 2.1E-21 193.0 51.2 387 34-438 278-700 (1157)
13 PRK11447 cellulose synthase su 99.8 3.1E-15 6.6E-20 180.1 61.7 373 20-401 57-522 (1157)
14 PRK15174 Vi polysaccharide exp 99.8 7.9E-16 1.7E-20 173.2 45.8 322 70-402 51-380 (656)
15 TIGR00990 3a0801s09 mitochondr 99.8 2.1E-15 4.6E-20 170.3 48.8 389 33-438 135-571 (615)
16 PRK15174 Vi polysaccharide exp 99.8 1.3E-15 2.9E-20 171.4 45.9 331 95-438 45-381 (656)
17 PRK10049 pgaA outer membrane p 99.8 2.9E-15 6.2E-20 172.3 47.7 403 28-445 17-461 (765)
18 TIGR00990 3a0801s09 mitochondr 99.8 3.2E-15 6.9E-20 168.8 47.2 357 34-403 169-571 (615)
19 KOG4626 O-linked N-acetylgluco 99.8 2.5E-16 5.4E-21 160.8 33.6 389 36-444 93-489 (966)
20 KOG4422 Uncharacterized conser 99.8 1.7E-14 3.7E-19 141.6 44.6 416 12-438 103-590 (625)
21 PRK14574 hmsH outer membrane p 99.7 2.5E-13 5.4E-18 153.4 50.6 424 36-473 45-515 (822)
22 PRK10049 pgaA outer membrane p 99.7 1.3E-13 2.8E-18 158.7 46.1 364 67-444 21-426 (765)
23 PRK09782 bacteriophage N4 rece 99.7 4.1E-12 8.9E-17 146.6 54.3 503 37-564 56-706 (987)
24 PRK09782 bacteriophage N4 rece 99.7 1.5E-11 3.2E-16 142.1 54.0 452 38-512 121-686 (987)
25 PRK14574 hmsH outer membrane p 99.6 2.7E-11 5.8E-16 137.1 47.8 398 68-474 41-482 (822)
26 KOG4422 Uncharacterized conser 99.6 2.6E-11 5.6E-16 119.6 41.0 313 91-410 115-469 (625)
27 KOG2002 TPR-containing nuclear 99.6 2.8E-11 6E-16 131.1 42.2 428 20-454 265-726 (1018)
28 KOG2002 TPR-containing nuclear 99.6 7.1E-11 1.5E-15 128.0 41.8 404 37-451 319-758 (1018)
29 KOG2003 TPR repeat-containing 99.6 7.4E-12 1.6E-16 123.9 29.7 409 37-456 213-706 (840)
30 KOG2076 RNA polymerase III tra 99.5 4.8E-10 1E-14 120.9 39.0 368 30-402 144-554 (895)
31 PRK10747 putative protoheme IX 99.5 1.8E-10 4E-15 122.4 35.0 283 105-400 97-387 (398)
32 PF13429 TPR_15: Tetratricopep 99.5 3.3E-13 7.2E-18 136.9 12.7 216 139-362 56-271 (280)
33 PF13429 TPR_15: Tetratricopep 99.5 5E-13 1.1E-17 135.6 13.4 257 32-296 15-275 (280)
34 TIGR00540 hemY_coli hemY prote 99.5 3.8E-10 8.1E-15 120.7 35.7 291 73-366 96-397 (409)
35 PRK10747 putative protoheme IX 99.5 4E-10 8.7E-15 119.8 35.2 281 74-367 97-389 (398)
36 KOG2076 RNA polymerase III tra 99.4 2.8E-09 6.1E-14 115.2 40.5 361 71-436 149-553 (895)
37 KOG2003 TPR repeat-containing 99.4 3.4E-10 7.3E-15 112.3 30.1 376 36-425 248-710 (840)
38 TIGR00540 hemY_coli hemY prote 99.4 7E-10 1.5E-14 118.6 35.2 290 103-400 95-396 (409)
39 KOG1155 Anaphase-promoting com 99.4 6.6E-09 1.4E-13 104.1 38.6 163 270-436 331-493 (559)
40 KOG0495 HAT repeat protein [RN 99.4 9.5E-08 2.1E-12 99.7 47.9 415 25-456 376-799 (913)
41 KOG1155 Anaphase-promoting com 99.4 1.1E-08 2.4E-13 102.6 39.7 289 136-435 236-533 (559)
42 KOG1915 Cell cycle control pro 99.4 4.6E-08 9.9E-13 98.3 43.3 400 37-452 85-515 (677)
43 COG2956 Predicted N-acetylgluc 99.4 4.6E-09 1E-13 100.7 34.2 271 105-418 48-324 (389)
44 KOG1126 DNA-binding cell divis 99.3 4.4E-10 9.5E-15 117.7 26.1 282 143-438 335-620 (638)
45 KOG0495 HAT repeat protein [RN 99.3 8.1E-07 1.8E-11 92.9 47.9 341 102-455 416-764 (913)
46 COG3071 HemY Uncharacterized e 99.3 1.2E-08 2.6E-13 101.0 33.0 286 105-402 97-389 (400)
47 COG2956 Predicted N-acetylgluc 99.3 1.6E-08 3.5E-13 97.0 31.7 273 175-455 48-326 (389)
48 PF13041 PPR_2: PPR repeat fam 99.3 7E-12 1.5E-16 89.6 6.6 50 372-421 1-50 (50)
49 KOG1126 DNA-binding cell divis 99.3 1.3E-09 2.8E-14 114.3 25.6 198 197-402 421-619 (638)
50 KOG0547 Translocase of outer m 99.3 3.3E-08 7.1E-13 99.8 34.4 384 34-437 124-565 (606)
51 KOG1915 Cell cycle control pro 99.3 1.2E-06 2.5E-11 88.4 44.9 359 71-439 83-467 (677)
52 KOG4318 Bicoid mRNA stability 99.3 3.6E-09 7.8E-14 113.7 28.0 249 116-389 14-286 (1088)
53 PF13041 PPR_2: PPR repeat fam 99.2 3E-11 6.6E-16 86.3 6.8 50 160-209 1-50 (50)
54 KOG2047 mRNA splicing factor [ 99.2 3.4E-07 7.3E-12 95.6 38.6 407 35-451 112-629 (835)
55 KOG4318 Bicoid mRNA stability 99.2 5.3E-10 1.2E-14 119.9 18.7 254 148-425 11-287 (1088)
56 TIGR02521 type_IV_pilW type IV 99.2 1.4E-08 3E-13 99.7 27.6 197 128-329 32-228 (234)
57 PRK12370 invasion protein regu 99.2 1.2E-08 2.6E-13 113.4 29.9 249 74-334 274-536 (553)
58 COG3071 HemY Uncharacterized e 99.2 1.5E-07 3.2E-12 93.4 33.6 287 74-372 97-394 (400)
59 TIGR02521 type_IV_pilW type IV 99.2 2.4E-08 5.2E-13 98.0 27.7 200 234-437 31-231 (234)
60 KOG1173 Anaphase-promoting com 99.2 1.8E-07 4E-12 96.4 32.6 284 158-454 240-532 (611)
61 PRK12370 invasion protein regu 99.1 6E-08 1.3E-12 107.9 31.9 231 212-454 276-519 (553)
62 KOG1129 TPR repeat-containing 99.1 3E-08 6.4E-13 95.1 22.6 228 166-402 227-457 (478)
63 KOG1173 Anaphase-promoting com 99.1 5.9E-07 1.3E-11 92.8 32.5 284 123-418 240-531 (611)
64 KOG2376 Signal recognition par 99.1 2E-05 4.4E-10 82.1 43.2 416 28-467 15-516 (652)
65 KOG1156 N-terminal acetyltrans 99.0 4.2E-05 9.1E-10 80.7 44.6 389 37-439 19-469 (700)
66 PF12569 NARP1: NMDA receptor- 99.0 2.1E-06 4.6E-11 92.4 35.9 289 136-437 13-333 (517)
67 KOG1840 Kinesin light chain [C 99.0 9E-07 2E-11 94.1 32.4 241 167-436 204-477 (508)
68 KOG1129 TPR repeat-containing 99.0 4.4E-08 9.6E-13 93.9 19.7 233 130-373 226-461 (478)
69 KOG1174 Anaphase-promoting com 99.0 2E-05 4.4E-10 78.5 37.8 397 29-437 47-499 (564)
70 PF12569 NARP1: NMDA receptor- 99.0 2E-06 4.3E-11 92.7 32.2 232 94-334 40-292 (517)
71 KOG0547 Translocase of outer m 98.9 2E-05 4.4E-10 80.2 36.6 188 244-438 336-532 (606)
72 KOG1156 N-terminal acetyltrans 98.9 6.3E-05 1.4E-09 79.4 40.7 359 74-445 20-440 (700)
73 KOG3785 Uncharacterized conser 98.8 0.00015 3.3E-09 70.9 38.4 377 32-432 29-451 (557)
74 PRK11189 lipoprotein NlpI; Pro 98.8 5.8E-06 1.3E-10 84.2 29.2 218 212-439 41-266 (296)
75 PRK11189 lipoprotein NlpI; Pro 98.8 1.9E-06 4.1E-11 87.8 25.5 95 95-191 67-161 (296)
76 KOG1840 Kinesin light chain [C 98.8 1.3E-06 2.8E-11 93.0 24.2 234 133-366 205-477 (508)
77 KOG3785 Uncharacterized conser 98.8 6.4E-05 1.4E-09 73.5 33.2 405 28-454 58-504 (557)
78 cd05804 StaR_like StaR_like; a 98.8 4.1E-05 8.9E-10 80.7 35.7 303 129-437 8-335 (355)
79 KOG2047 mRNA splicing factor [ 98.8 0.00049 1.1E-08 72.7 47.6 452 26-503 24-585 (835)
80 cd05804 StaR_like StaR_like; a 98.8 5.8E-05 1.3E-09 79.6 35.0 197 203-402 120-335 (355)
81 PRK04841 transcriptional regul 98.7 0.00016 3.4E-09 86.6 42.5 337 102-438 384-760 (903)
82 COG3063 PilF Tfp pilus assembl 98.7 1.5E-05 3.3E-10 73.6 24.4 199 129-332 37-235 (250)
83 KOG1174 Anaphase-promoting com 98.6 0.00073 1.6E-08 67.7 35.8 291 106-409 210-504 (564)
84 KOG2376 Signal recognition par 98.6 0.00049 1.1E-08 72.1 36.0 380 33-432 54-514 (652)
85 COG3063 PilF Tfp pilus assembl 98.6 4E-05 8.7E-10 70.9 24.7 186 243-432 44-230 (250)
86 PF12854 PPR_1: PPR repeat 98.6 4.5E-08 9.8E-13 62.7 4.1 32 369-400 2-33 (34)
87 PF04733 Coatomer_E: Coatomer 98.6 2E-06 4.3E-11 86.3 17.9 253 31-298 7-265 (290)
88 KOG4162 Predicted calmodulin-b 98.6 0.0018 3.8E-08 70.2 41.8 221 38-262 297-541 (799)
89 PRK04841 transcriptional regul 98.6 0.00038 8.3E-09 83.3 39.8 332 72-403 385-760 (903)
90 KOG3616 Selective LIM binding 98.6 0.0002 4.2E-09 76.3 31.8 194 134-363 739-932 (1636)
91 PF12854 PPR_1: PPR repeat 98.6 9.7E-08 2.1E-12 61.2 4.2 32 157-188 2-33 (34)
92 KOG4162 Predicted calmodulin-b 98.5 0.0011 2.4E-08 71.7 35.9 391 34-438 332-783 (799)
93 PF04733 Coatomer_E: Coatomer 98.5 6.2E-06 1.3E-10 82.8 18.4 128 304-437 131-264 (290)
94 KOG0985 Vesicle coat protein c 98.5 0.0011 2.3E-08 73.4 35.3 317 22-387 981-1326(1666)
95 KOG0624 dsRNA-activated protei 98.5 0.00024 5.3E-09 69.3 26.5 302 59-369 36-371 (504)
96 KOG1914 mRNA cleavage and poly 98.5 0.0023 4.9E-08 66.6 34.8 387 58-452 17-480 (656)
97 KOG3617 WD40 and TPR repeat-co 98.4 0.0022 4.8E-08 69.6 34.3 71 36-116 811-882 (1416)
98 KOG0624 dsRNA-activated protei 98.4 0.0028 6E-08 62.2 33.1 310 91-438 37-370 (504)
99 KOG0548 Molecular co-chaperone 98.4 0.0018 4E-08 67.3 32.2 373 32-438 9-421 (539)
100 KOG1070 rRNA processing protei 98.4 0.00022 4.7E-09 81.5 26.6 224 91-319 1457-1686(1710)
101 PLN02789 farnesyltranstransfer 98.3 0.00073 1.6E-08 68.9 27.5 213 96-316 41-267 (320)
102 KOG4340 Uncharacterized conser 98.3 0.002 4.2E-08 62.0 28.0 187 31-226 16-207 (459)
103 KOG3616 Selective LIM binding 98.3 0.00061 1.3E-08 72.7 26.7 108 101-221 741-848 (1636)
104 KOG1070 rRNA processing protei 98.3 0.00051 1.1E-08 78.6 27.4 225 196-427 1457-1689(1710)
105 KOG0985 Vesicle coat protein c 98.3 0.0033 7E-08 69.9 32.0 198 199-433 1106-1303(1666)
106 KOG1125 TPR repeat-containing 98.2 0.00013 2.7E-09 76.4 20.3 216 33-260 293-524 (579)
107 KOG1128 Uncharacterized conser 98.2 7.3E-05 1.6E-09 80.0 19.0 212 132-366 403-614 (777)
108 KOG1127 TPR repeat-containing 98.2 0.0021 4.5E-08 71.4 30.0 182 38-225 471-658 (1238)
109 KOG1125 TPR repeat-containing 98.2 0.00015 3.3E-09 75.7 20.4 221 207-436 295-525 (579)
110 PLN02789 farnesyltranstransfer 98.2 0.0015 3.2E-08 66.7 27.2 209 135-351 45-267 (320)
111 KOG1128 Uncharacterized conser 98.2 0.00026 5.5E-09 76.0 21.8 215 96-333 402-616 (777)
112 TIGR03302 OM_YfiO outer membra 98.2 0.00023 5E-09 70.0 20.7 58 275-332 172-231 (235)
113 TIGR03302 OM_YfiO outer membra 98.2 0.00023 5E-09 70.1 20.7 187 89-298 30-232 (235)
114 KOG3081 Vesicle coat complex C 98.1 0.0017 3.8E-08 61.6 23.6 139 114-264 95-237 (299)
115 KOG0548 Molecular co-chaperone 98.1 0.006 1.3E-07 63.7 29.6 353 70-451 11-399 (539)
116 KOG1914 mRNA cleavage and poly 98.1 0.016 3.5E-07 60.5 35.8 424 26-455 17-521 (656)
117 COG4783 Putative Zn-dependent 98.1 0.014 3E-07 60.5 31.5 218 213-455 253-473 (484)
118 KOG4340 Uncharacterized conser 98.1 0.0029 6.2E-08 60.9 24.7 187 102-300 20-209 (459)
119 PRK10370 formate-dependent nit 98.1 0.00073 1.6E-08 64.1 20.6 97 338-437 72-172 (198)
120 COG5010 TadD Flp pilus assembl 98.1 0.00079 1.7E-08 63.9 20.1 154 100-259 74-227 (257)
121 TIGR00756 PPR pentatricopeptid 98.1 6E-06 1.3E-10 53.6 4.4 33 376-408 2-34 (35)
122 PRK10370 formate-dependent nit 98.1 0.00096 2.1E-08 63.2 21.1 116 249-367 54-172 (198)
123 PRK15179 Vi polysaccharide bio 98.0 0.001 2.2E-08 74.8 23.9 236 126-387 27-268 (694)
124 COG5010 TadD Flp pilus assembl 98.0 0.0015 3.3E-08 62.0 20.9 124 236-362 102-225 (257)
125 KOG3617 WD40 and TPR repeat-co 98.0 0.0014 3.1E-08 71.0 22.6 60 89-154 723-784 (1416)
126 PRK14720 transcript cleavage f 98.0 0.0039 8.4E-08 71.1 26.3 140 33-191 39-178 (906)
127 KOG1127 TPR repeat-containing 97.9 0.0099 2.1E-07 66.4 28.2 145 39-189 506-657 (1238)
128 PRK14720 transcript cleavage f 97.9 0.0044 9.6E-08 70.6 26.5 239 89-385 28-268 (906)
129 COG4783 Putative Zn-dependent 97.9 0.0035 7.6E-08 64.7 23.0 114 208-326 317-430 (484)
130 PRK15359 type III secretion sy 97.9 0.00058 1.3E-08 61.1 15.8 95 95-191 27-121 (144)
131 PRK15359 type III secretion sy 97.9 0.00066 1.4E-08 60.8 16.0 89 312-402 32-120 (144)
132 PRK15179 Vi polysaccharide bio 97.9 0.0052 1.1E-07 69.3 26.6 234 92-352 28-268 (694)
133 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.4E-10 51.2 4.0 32 376-407 3-34 (34)
134 KOG3081 Vesicle coat complex C 97.9 0.0068 1.5E-07 57.7 22.7 153 274-437 113-270 (299)
135 TIGR00756 PPR pentatricopeptid 97.9 2.3E-05 4.9E-10 50.8 4.5 33 164-196 2-34 (35)
136 TIGR02552 LcrH_SycD type III s 97.8 0.00094 2E-08 59.1 15.4 89 312-402 25-113 (135)
137 KOG2053 Mitochondrial inherita 97.8 0.11 2.3E-06 58.0 43.9 224 35-264 19-256 (932)
138 PF13812 PPR_3: Pentatricopept 97.8 3.6E-05 7.7E-10 49.5 4.0 33 163-195 2-34 (34)
139 TIGR02552 LcrH_SycD type III s 97.7 0.0017 3.8E-08 57.4 15.2 95 129-225 19-113 (135)
140 PF01535 PPR: PPR repeat; Int 97.7 4.4E-05 9.6E-10 47.9 3.1 29 376-404 2-30 (31)
141 PF10037 MRP-S27: Mitochondria 97.6 0.00076 1.6E-08 70.5 13.4 120 303-422 65-186 (429)
142 PF10037 MRP-S27: Mitochondria 97.6 0.0012 2.7E-08 69.0 14.1 124 194-317 63-186 (429)
143 KOG2053 Mitochondrial inherita 97.6 0.22 4.8E-06 55.6 41.7 222 74-301 22-258 (932)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0042 9.1E-08 64.8 17.6 120 274-400 174-294 (395)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0041 8.9E-08 64.8 16.8 124 165-296 172-295 (395)
146 PF01535 PPR: PPR repeat; Int 97.5 0.0001 2.2E-09 46.2 3.1 29 164-192 2-30 (31)
147 PF08579 RPM2: Mitochondrial r 97.5 0.0015 3.3E-08 53.6 10.4 76 97-172 30-114 (120)
148 PF09976 TPR_21: Tetratricopep 97.5 0.0063 1.4E-07 54.6 15.9 124 130-259 15-143 (145)
149 PF14432 DYW_deaminase: DYW fa 97.5 1.7E-05 3.7E-10 67.3 -0.9 71 569-650 2-85 (116)
150 KOG3060 Uncharacterized conser 97.5 0.1 2.2E-06 49.7 23.6 116 318-437 100-219 (289)
151 KOG3060 Uncharacterized conser 97.5 0.1 2.3E-06 49.5 24.0 82 283-366 100-181 (289)
152 PF09976 TPR_21: Tetratricopep 97.4 0.007 1.5E-07 54.3 15.4 19 344-362 123-141 (145)
153 PF08579 RPM2: Mitochondrial r 97.4 0.0033 7.2E-08 51.6 11.1 81 129-209 27-116 (120)
154 KOG2041 WD40 repeat protein [G 97.4 0.065 1.4E-06 57.7 23.0 333 77-451 679-1064(1189)
155 PF06239 ECSIT: Evolutionarily 97.3 0.0024 5.3E-08 59.2 11.0 71 353-423 66-152 (228)
156 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.012 2.5E-07 50.5 14.2 17 206-222 48-64 (119)
157 PF06239 ECSIT: Evolutionarily 97.2 0.0052 1.1E-07 57.1 11.6 105 89-212 44-153 (228)
158 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.016 3.6E-07 49.6 14.2 100 200-299 5-106 (119)
159 cd00189 TPR Tetratricopeptide 97.2 0.0085 1.8E-07 48.3 11.8 89 133-223 6-94 (100)
160 cd00189 TPR Tetratricopeptide 97.1 0.011 2.3E-07 47.7 12.1 20 344-363 73-92 (100)
161 PF05843 Suf: Suppressor of fo 97.1 0.013 2.8E-07 59.0 14.4 142 306-452 3-148 (280)
162 KOG2041 WD40 repeat protein [G 97.0 0.74 1.6E-05 50.0 28.4 53 374-426 1019-1074(1189)
163 PF05843 Suf: Suppressor of fo 97.0 0.015 3.2E-07 58.6 13.8 130 199-333 3-136 (280)
164 PLN03088 SGT1, suppressor of 96.9 0.021 4.5E-07 59.7 15.1 85 350-437 13-98 (356)
165 PF04840 Vps16_C: Vps16, C-ter 96.9 0.64 1.4E-05 47.5 27.9 106 273-398 181-286 (319)
166 PRK10153 DNA-binding transcrip 96.9 0.062 1.4E-06 58.8 18.4 63 373-437 419-481 (517)
167 PLN03088 SGT1, suppressor of 96.9 0.034 7.5E-07 58.1 15.8 106 310-419 8-113 (356)
168 PRK02603 photosystem I assembl 96.9 0.057 1.2E-06 50.0 15.7 83 272-355 38-122 (172)
169 PF14938 SNAP: Soluble NSF att 96.8 0.14 3E-06 51.7 19.4 26 272-297 158-183 (282)
170 PF14559 TPR_19: Tetratricopep 96.7 0.0056 1.2E-07 46.5 6.8 62 35-98 1-64 (68)
171 PRK10866 outer membrane biogen 96.7 0.25 5.4E-06 48.5 19.9 54 345-398 181-236 (243)
172 KOG0553 TPR repeat-containing 96.7 0.017 3.7E-07 56.2 11.1 93 35-131 91-186 (304)
173 PRK15363 pathogenicity island 96.7 0.052 1.1E-06 48.3 13.2 93 273-367 39-131 (157)
174 PRK15363 pathogenicity island 96.7 0.055 1.2E-06 48.1 13.2 90 98-189 41-130 (157)
175 PF12895 Apc3: Anaphase-promot 96.7 0.0042 9.1E-08 49.7 5.8 80 352-434 2-83 (84)
176 CHL00033 ycf3 photosystem I as 96.6 0.063 1.4E-06 49.5 14.2 80 270-350 36-117 (168)
177 KOG2796 Uncharacterized conser 96.6 0.71 1.5E-05 44.2 20.9 143 270-415 178-325 (366)
178 PRK10866 outer membrane biogen 96.6 0.47 1E-05 46.6 20.7 177 240-436 38-239 (243)
179 PRK02603 photosystem I assembl 96.6 0.097 2.1E-06 48.4 15.2 93 91-184 34-128 (172)
180 PRK10153 DNA-binding transcrip 96.6 0.2 4.3E-06 55.0 19.6 146 263-413 331-490 (517)
181 PF12895 Apc3: Anaphase-promot 96.5 0.0059 1.3E-07 48.8 5.8 18 345-362 31-48 (84)
182 CHL00033 ycf3 photosystem I as 96.5 0.044 9.6E-07 50.5 12.2 25 165-189 38-62 (168)
183 PF12688 TPR_5: Tetratrico pep 96.3 0.2 4.4E-06 42.8 14.0 55 278-332 10-66 (120)
184 PF14938 SNAP: Soluble NSF att 96.2 0.11 2.4E-06 52.4 14.4 54 314-367 124-183 (282)
185 PF12688 TPR_5: Tetratrico pep 96.2 0.21 4.5E-06 42.7 13.5 55 171-225 10-66 (120)
186 PF14559 TPR_19: Tetratricopep 96.2 0.02 4.3E-07 43.4 6.8 51 140-191 4-54 (68)
187 PF04840 Vps16_C: Vps16, C-ter 96.1 2 4.3E-05 44.0 28.2 105 307-431 180-284 (319)
188 PF13432 TPR_16: Tetratricopep 96.1 0.026 5.6E-07 42.4 6.9 55 347-402 5-59 (65)
189 KOG0553 TPR repeat-containing 96.1 0.08 1.7E-06 51.7 11.5 95 315-414 92-187 (304)
190 KOG1538 Uncharacterized conser 96.1 0.15 3.3E-06 54.5 14.3 216 128-374 557-806 (1081)
191 KOG0550 Molecular chaperone (D 96.0 1.3 2.8E-05 45.4 20.0 176 232-438 166-350 (486)
192 PF13525 YfiO: Outer membrane 96.0 0.93 2E-05 43.2 18.6 57 100-156 13-71 (203)
193 KOG2280 Vacuolar assembly/sort 95.9 3 6.6E-05 46.1 23.4 123 31-155 443-574 (829)
194 PF13525 YfiO: Outer membrane 95.9 1.3 2.8E-05 42.2 19.0 22 346-367 148-169 (203)
195 smart00463 SMR Small MutS-rela 95.8 0.037 7.9E-07 43.7 6.9 76 577-666 2-78 (80)
196 COG4235 Cytochrome c biogenesi 95.8 0.45 9.6E-06 46.9 15.5 98 303-402 155-255 (287)
197 PF13432 TPR_16: Tetratricopep 95.7 0.049 1.1E-06 40.8 7.1 55 242-297 5-59 (65)
198 PF13414 TPR_11: TPR repeat; P 95.6 0.055 1.2E-06 41.1 7.2 60 236-296 5-65 (69)
199 PRK10803 tol-pal system protei 95.6 0.19 4.1E-06 49.8 12.4 58 165-224 146-207 (263)
200 PF03704 BTAD: Bacterial trans 95.5 0.73 1.6E-05 41.1 15.1 57 273-330 66-122 (146)
201 KOG1538 Uncharacterized conser 95.4 1.3 2.9E-05 47.7 18.2 39 44-86 619-657 (1081)
202 PF13414 TPR_11: TPR repeat; P 95.4 0.077 1.7E-06 40.3 7.3 61 93-154 4-65 (69)
203 PRK10803 tol-pal system protei 95.4 0.34 7.3E-06 48.0 13.4 96 129-226 145-246 (263)
204 COG4235 Cytochrome c biogenesi 95.4 0.93 2E-05 44.7 15.9 113 266-382 153-268 (287)
205 KOG3941 Intermediate in Toll s 95.4 0.12 2.7E-06 49.7 9.6 112 82-212 55-173 (406)
206 PF12921 ATP13: Mitochondrial 95.3 0.3 6.4E-06 42.2 11.2 80 198-277 3-96 (126)
207 PF03704 BTAD: Bacterial trans 95.1 0.14 3.1E-06 45.8 9.1 71 236-307 64-139 (146)
208 KOG2796 Uncharacterized conser 95.1 3.4 7.4E-05 39.8 24.2 132 164-298 179-315 (366)
209 PF13371 TPR_9: Tetratricopept 95.0 0.15 3.2E-06 39.2 7.7 54 348-402 4-57 (73)
210 PF12921 ATP13: Mitochondrial 95.0 0.35 7.5E-06 41.8 10.5 97 338-454 1-98 (126)
211 KOG1130 Predicted G-alpha GTPa 94.8 0.38 8.3E-06 48.9 11.7 50 101-151 26-79 (639)
212 COG4700 Uncharacterized protei 94.7 3.2 7E-05 37.8 18.3 102 195-298 87-189 (251)
213 KOG3941 Intermediate in Toll s 94.7 0.24 5.1E-06 47.8 9.3 117 124-261 64-186 (406)
214 PF13281 DUF4071: Domain of un 94.7 5.4 0.00012 41.4 19.9 31 408-438 304-334 (374)
215 smart00299 CLH Clathrin heavy 94.4 2.7 5.9E-05 37.1 15.6 41 133-174 13-53 (140)
216 PF04053 Coatomer_WDAD: Coatom 94.4 1.6 3.6E-05 46.7 16.3 169 24-223 260-428 (443)
217 KOG1130 Predicted G-alpha GTPa 94.4 1.5 3.3E-05 44.8 14.6 265 135-401 25-342 (639)
218 PF09205 DUF1955: Domain of un 94.4 2.7 5.9E-05 36.0 13.8 58 276-334 93-150 (161)
219 PF13371 TPR_9: Tetratricopept 94.3 0.29 6.2E-06 37.5 7.9 54 102-156 5-58 (73)
220 KOG0550 Molecular chaperone (D 94.3 7.5 0.00016 40.1 24.9 90 278-368 258-350 (486)
221 KOG2114 Vacuolar assembly/sort 94.3 6.9 0.00015 44.0 20.5 175 32-223 341-516 (933)
222 PF04053 Coatomer_WDAD: Coatom 94.1 1.5 3.2E-05 47.1 15.2 132 128-294 296-427 (443)
223 PF13281 DUF4071: Domain of un 94.1 8.4 0.00018 40.0 19.8 92 132-223 146-252 (374)
224 smart00299 CLH Clathrin heavy 93.9 3.7 8.1E-05 36.2 15.4 125 238-385 11-136 (140)
225 COG4700 Uncharacterized protei 93.9 4.9 0.00011 36.7 19.4 131 159-292 86-216 (251)
226 COG4649 Uncharacterized protei 93.9 1.6 3.6E-05 39.1 12.2 122 35-156 68-196 (221)
227 PRK15331 chaperone protein Sic 93.8 0.5 1.1E-05 42.4 9.2 82 73-155 49-133 (165)
228 PF13170 DUF4003: Protein of u 93.7 7.8 0.00017 39.2 18.8 130 285-416 78-224 (297)
229 PF13424 TPR_12: Tetratricopep 93.5 0.25 5.4E-06 38.6 6.2 61 376-436 7-73 (78)
230 COG3898 Uncharacterized membra 93.3 11 0.00024 38.6 30.0 148 285-444 245-398 (531)
231 PF13170 DUF4003: Protein of u 93.2 4.6 0.0001 40.8 16.2 131 178-310 78-223 (297)
232 PLN03098 LPA1 LOW PSII ACCUMUL 93.1 1.6 3.4E-05 45.9 12.7 37 19-55 69-105 (453)
233 COG3118 Thioredoxin domain-con 93.1 10 0.00022 37.6 17.5 150 137-292 144-295 (304)
234 PLN03098 LPA1 LOW PSII ACCUMUL 93.1 2.4 5.2E-05 44.6 14.0 63 91-155 74-140 (453)
235 COG3118 Thioredoxin domain-con 93.0 10 0.00022 37.5 17.8 142 171-318 143-286 (304)
236 PF07079 DUF1347: Protein of u 93.0 13 0.00029 38.9 41.2 418 36-467 17-520 (549)
237 PRK15331 chaperone protein Sic 93.0 0.94 2E-05 40.6 9.5 86 245-332 48-133 (165)
238 COG4105 ComL DNA uptake lipopr 93.0 9.4 0.0002 37.0 16.9 54 381-435 174-230 (254)
239 COG3898 Uncharacterized membra 92.9 12 0.00027 38.3 31.6 278 75-368 98-392 (531)
240 PF09205 DUF1955: Domain of un 92.9 5.5 0.00012 34.2 14.2 64 306-370 88-151 (161)
241 PF13424 TPR_12: Tetratricopep 92.8 0.31 6.7E-06 38.0 5.8 22 201-222 9-30 (78)
242 KOG2610 Uncharacterized conser 92.7 7.8 0.00017 38.8 16.0 151 281-434 115-272 (491)
243 KOG0543 FKBP-type peptidyl-pro 92.5 3.8 8.3E-05 42.2 14.2 93 94-189 259-353 (397)
244 PF10300 DUF3808: Protein of u 92.4 10 0.00022 41.3 18.7 94 129-224 190-294 (468)
245 KOG4555 TPR repeat-containing 91.9 4.9 0.00011 34.3 11.8 91 348-439 52-145 (175)
246 KOG4555 TPR repeat-containing 91.3 6.9 0.00015 33.5 12.0 90 102-192 53-145 (175)
247 PF08631 SPO22: Meiosis protei 91.2 18 0.00039 36.4 24.9 62 199-263 86-150 (278)
248 PF10300 DUF3808: Protein of u 91.2 10 0.00023 41.3 17.0 129 237-367 191-333 (468)
249 KOG2066 Vacuolar assembly/sort 90.6 34 0.00073 38.6 28.2 152 30-189 361-532 (846)
250 COG0457 NrfG FOG: TPR repeat [ 90.1 17 0.00036 34.2 30.8 200 235-438 60-265 (291)
251 COG1729 Uncharacterized protei 90.1 6.2 0.00013 38.5 12.4 22 203-224 184-205 (262)
252 COG3629 DnrI DNA-binding trans 89.9 3.5 7.6E-05 40.8 10.8 77 129-206 155-236 (280)
253 KOG2114 Vacuolar assembly/sort 89.9 21 0.00046 40.4 17.5 177 165-366 337-517 (933)
254 COG3629 DnrI DNA-binding trans 89.6 3.9 8.5E-05 40.5 10.9 61 340-401 154-214 (280)
255 KOG0543 FKBP-type peptidyl-pro 89.5 7.3 0.00016 40.2 12.9 95 270-366 258-353 (397)
256 KOG2610 Uncharacterized conser 89.4 8.3 0.00018 38.6 12.7 113 175-292 116-232 (491)
257 COG4105 ComL DNA uptake lipopr 89.1 23 0.0005 34.4 20.8 58 344-402 172-232 (254)
258 PF13512 TPR_18: Tetratricopep 88.9 11 0.00025 33.0 12.0 24 240-263 53-76 (142)
259 COG1729 Uncharacterized protei 88.9 6.1 0.00013 38.6 11.5 90 209-298 153-244 (262)
260 KOG2280 Vacuolar assembly/sort 88.8 45 0.00097 37.4 32.3 301 119-435 424-770 (829)
261 COG0457 NrfG FOG: TPR repeat [ 88.7 21 0.00046 33.5 30.8 202 198-403 60-265 (291)
262 COG5107 RNA14 Pre-mRNA 3'-end 88.4 36 0.00078 35.8 22.7 57 164-221 399-456 (660)
263 PF04184 ST7: ST7 protein; In 88.3 39 0.00085 36.1 18.2 59 131-189 263-322 (539)
264 PRK11906 transcriptional regul 88.2 25 0.00055 37.3 16.1 142 75-222 272-432 (458)
265 PF13428 TPR_14: Tetratricopep 87.8 2.1 4.6E-05 28.9 5.6 23 240-262 7-29 (44)
266 KOG1258 mRNA processing protei 87.1 51 0.0011 36.1 39.7 132 23-156 39-180 (577)
267 PF10602 RPN7: 26S proteasome 87.1 14 0.00029 34.3 12.3 97 129-225 38-141 (177)
268 PF13428 TPR_14: Tetratricopep 87.0 2.2 4.7E-05 28.9 5.3 30 271-300 3-32 (44)
269 PF07035 Mic1: Colon cancer-as 87.0 24 0.00051 32.1 15.1 51 257-311 17-67 (167)
270 KOG1585 Protein required for f 86.6 32 0.00069 33.2 17.4 24 95-118 34-57 (308)
271 PF07079 DUF1347: Protein of u 86.5 47 0.001 35.1 34.8 400 39-451 59-532 (549)
272 PF07035 Mic1: Colon cancer-as 86.4 26 0.00055 31.9 15.1 133 183-332 15-148 (167)
273 PF04184 ST7: ST7 protein; In 86.2 52 0.0011 35.3 17.2 56 310-365 265-321 (539)
274 KOG1920 IkappaB kinase complex 86.1 82 0.0018 37.5 26.9 131 276-434 915-1051(1265)
275 KOG0276 Vesicle coat complex C 86.0 10 0.00022 41.1 11.9 157 29-222 590-746 (794)
276 KOG1941 Acetylcholine receptor 86.0 43 0.00093 34.2 15.4 166 199-365 85-272 (518)
277 KOG1550 Extracellular protein 85.7 66 0.0014 36.0 21.5 146 41-192 228-394 (552)
278 KOG1941 Acetylcholine receptor 85.6 26 0.00056 35.7 13.7 127 310-436 128-273 (518)
279 PRK11906 transcriptional regul 85.5 55 0.0012 34.9 18.2 17 37-53 46-62 (458)
280 PF04097 Nic96: Nup93/Nic96; 85.3 65 0.0014 36.5 18.9 88 170-263 266-356 (613)
281 PRK09687 putative lyase; Provi 84.7 46 0.001 33.4 30.0 234 88-348 33-276 (280)
282 PF09613 HrpB1_HrpK: Bacterial 84.6 25 0.00055 31.6 12.0 50 37-88 22-71 (160)
283 COG5107 RNA14 Pre-mRNA 3'-end 84.4 58 0.0013 34.3 37.8 386 58-452 39-510 (660)
284 KOG1585 Protein required for f 84.0 42 0.00092 32.4 17.8 13 282-294 203-215 (308)
285 PF10602 RPN7: 26S proteasome 84.0 12 0.00025 34.7 10.3 61 164-224 38-100 (177)
286 KOG1586 Protein required for f 83.3 32 0.00069 32.9 12.5 20 351-370 166-185 (288)
287 KOG4570 Uncharacterized conser 83.2 16 0.00035 36.3 11.0 96 303-402 63-163 (418)
288 PF07575 Nucleopor_Nup85: Nup8 82.7 48 0.001 37.2 16.6 147 289-453 390-539 (566)
289 PF13512 TPR_18: Tetratricopep 82.7 33 0.00072 30.2 12.7 74 101-174 19-94 (142)
290 PF13176 TPR_7: Tetratricopept 82.5 3 6.5E-05 26.7 4.2 23 165-187 2-24 (36)
291 PF09613 HrpB1_HrpK: Bacterial 82.5 37 0.0008 30.5 12.7 50 103-156 21-73 (160)
292 KOG4570 Uncharacterized conser 82.4 15 0.00032 36.6 10.3 101 334-438 59-164 (418)
293 PF13176 TPR_7: Tetratricopept 82.3 2.9 6.3E-05 26.8 4.0 23 377-399 2-24 (36)
294 TIGR02561 HrpB1_HrpK type III 82.2 17 0.00038 32.0 9.8 65 37-103 22-87 (153)
295 PF02284 COX5A: Cytochrome c o 81.8 27 0.00059 28.6 10.7 62 392-455 28-90 (108)
296 COG4649 Uncharacterized protei 80.3 46 0.001 30.3 14.4 124 244-367 68-195 (221)
297 KOG1550 Extracellular protein 79.8 1.1E+02 0.0024 34.3 25.3 180 108-301 228-429 (552)
298 PF00515 TPR_1: Tetratricopept 79.0 4.6 9.9E-05 25.2 4.1 27 376-402 3-29 (34)
299 PF13762 MNE1: Mitochondrial s 78.3 39 0.00086 29.8 10.8 80 377-456 42-127 (145)
300 TIGR02508 type_III_yscG type I 77.8 37 0.00079 27.7 9.7 81 38-122 18-98 (115)
301 PF08631 SPO22: Meiosis protei 77.7 81 0.0018 31.6 28.1 160 103-267 4-190 (278)
302 PF01713 Smr: Smr domain; Int 76.9 11 0.00023 29.8 6.6 61 579-656 1-61 (83)
303 PF13431 TPR_17: Tetratricopep 76.5 3.5 7.6E-05 26.1 2.9 24 266-289 10-33 (34)
304 COG2976 Uncharacterized protei 76.4 37 0.00081 31.5 10.4 118 37-157 65-189 (207)
305 PF11207 DUF2989: Protein of u 76.4 24 0.00053 33.0 9.4 21 268-288 177-197 (203)
306 KOG0276 Vesicle coat complex C 76.3 33 0.00071 37.4 11.5 99 173-294 648-746 (794)
307 PRK09687 putative lyase; Provi 75.3 94 0.002 31.2 30.7 137 268-420 141-278 (280)
308 PF11207 DUF2989: Protein of u 75.3 27 0.00058 32.7 9.4 22 337-358 176-197 (203)
309 KOG1920 IkappaB kinase complex 75.0 1.9E+02 0.0042 34.6 24.4 160 211-401 894-1053(1265)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 74.8 44 0.00095 27.1 10.2 64 389-454 22-86 (103)
311 PF00515 TPR_1: Tetratricopept 71.9 9.8 0.00021 23.6 4.3 28 410-437 2-29 (34)
312 PF13374 TPR_10: Tetratricopep 71.9 9 0.00019 25.0 4.4 26 376-401 4-29 (42)
313 PF07719 TPR_2: Tetratricopept 71.8 9.1 0.0002 23.6 4.1 26 377-402 4-29 (34)
314 cd00923 Cyt_c_Oxidase_Va Cytoc 71.7 33 0.00072 27.8 7.8 45 287-331 25-69 (103)
315 PF00637 Clathrin: Region in C 71.7 1.2 2.5E-05 39.7 -0.3 84 345-435 13-96 (143)
316 COG1747 Uncharacterized N-term 71.5 1.5E+02 0.0033 31.9 24.5 181 90-279 64-249 (711)
317 PF13431 TPR_17: Tetratricopep 70.6 6.1 0.00013 25.0 3.0 16 129-144 15-30 (34)
318 KOG1464 COP9 signalosome, subu 70.2 1.1E+02 0.0025 29.9 16.0 168 22-189 23-218 (440)
319 TIGR02508 type_III_yscG type I 69.6 54 0.0012 26.8 8.5 87 320-414 21-107 (115)
320 PF13374 TPR_10: Tetratricopep 69.4 12 0.00026 24.4 4.5 27 270-296 3-29 (42)
321 PRK11619 lytic murein transgly 67.5 2.3E+02 0.005 32.4 31.3 360 22-412 126-514 (644)
322 PF13762 MNE1: Mitochondrial s 66.7 93 0.002 27.6 10.6 81 342-422 42-128 (145)
323 PF02284 COX5A: Cytochrome c o 66.6 28 0.00062 28.5 6.6 45 288-332 29-73 (108)
324 KOG4648 Uncharacterized conser 65.1 40 0.00087 34.1 8.7 105 71-181 107-214 (536)
325 COG4455 ImpE Protein of avirul 65.0 42 0.0009 31.8 8.2 51 169-220 8-58 (273)
326 TIGR02561 HrpB1_HrpK type III 64.9 1E+02 0.0022 27.4 11.2 49 104-156 22-73 (153)
327 PF00637 Clathrin: Region in C 64.1 2.6 5.6E-05 37.4 0.4 52 135-186 15-66 (143)
328 PF13929 mRNA_stabil: mRNA sta 63.9 1.6E+02 0.0035 29.4 18.1 116 284-399 143-263 (292)
329 PF10345 Cohesin_load: Cohesin 63.4 2.7E+02 0.0058 31.7 38.0 191 27-223 28-251 (608)
330 PF07719 TPR_2: Tetratricopept 63.2 20 0.00043 22.0 4.4 20 134-153 8-27 (34)
331 COG3947 Response regulator con 62.7 1.7E+02 0.0037 29.2 15.9 59 272-331 282-340 (361)
332 PHA02875 ankyrin repeat protei 61.3 1.7E+02 0.0036 31.2 13.9 44 292-339 184-230 (413)
333 COG2976 Uncharacterized protei 60.3 1.5E+02 0.0032 27.7 13.4 88 205-299 97-189 (207)
334 PF08311 Mad3_BUB1_I: Mad3/BUB 59.4 43 0.00094 28.9 7.1 59 25-85 65-123 (126)
335 PF13929 mRNA_stabil: mRNA sta 58.7 2E+02 0.0044 28.7 22.2 118 175-293 141-262 (292)
336 PRK11619 lytic murein transgly 57.4 3.4E+02 0.0074 31.0 39.0 50 381-433 414-463 (644)
337 COG3947 Response regulator con 57.4 2.1E+02 0.0046 28.6 16.2 60 306-366 281-340 (361)
338 KOG2034 Vacuolar sorting prote 57.1 3.7E+02 0.008 31.3 27.2 79 26-115 359-438 (911)
339 COG4455 ImpE Protein of avirul 56.7 69 0.0015 30.4 8.1 56 97-153 6-61 (273)
340 KOG2063 Vacuolar assembly/sort 56.5 4E+02 0.0086 31.5 17.5 57 30-88 312-373 (877)
341 KOG2297 Predicted translation 56.3 2.2E+02 0.0049 28.5 19.9 70 280-359 266-341 (412)
342 PF07163 Pex26: Pex26 protein; 55.9 1.2E+02 0.0026 30.0 10.0 87 311-397 90-181 (309)
343 PF06552 TOM20_plant: Plant sp 54.6 1.7E+02 0.0036 27.0 10.1 60 392-455 53-124 (186)
344 PF09477 Type_III_YscG: Bacter 53.4 1.3E+02 0.0028 25.0 8.6 82 37-122 18-99 (116)
345 PF07721 TPR_4: Tetratricopept 52.3 20 0.00044 20.9 2.7 18 345-362 7-24 (26)
346 PF13181 TPR_8: Tetratricopept 52.0 38 0.00082 20.8 4.3 27 376-402 3-29 (34)
347 KOG4077 Cytochrome c oxidase, 51.8 1.2E+02 0.0026 26.0 8.0 62 392-454 67-128 (149)
348 PRK15180 Vi polysaccharide bio 51.5 1.3E+02 0.0027 32.1 9.9 147 194-345 286-432 (831)
349 PHA02875 ankyrin repeat protei 51.3 3.3E+02 0.0071 29.0 15.7 53 314-374 175-230 (413)
350 PF13174 TPR_6: Tetratricopept 50.8 27 0.00059 21.1 3.5 19 136-154 9-27 (33)
351 cd08819 CARD_MDA5_2 Caspase ac 50.6 96 0.0021 24.7 6.9 64 289-358 22-85 (88)
352 PF13181 TPR_8: Tetratricopept 50.5 44 0.00095 20.4 4.4 26 271-296 3-28 (34)
353 TIGR03362 VI_chp_7 type VI sec 49.1 3E+02 0.0066 27.9 12.4 47 27-75 101-147 (301)
354 KOG1258 mRNA processing protei 47.5 4.3E+02 0.0094 29.2 29.3 369 37-425 91-491 (577)
355 PF04910 Tcf25: Transcriptiona 47.1 3.6E+02 0.0078 28.2 18.5 64 91-154 99-166 (360)
356 PF02259 FAT: FAT domain; Int 46.8 3.4E+02 0.0074 27.9 23.8 28 270-297 147-174 (352)
357 COG4785 NlpI Lipoprotein NlpI, 46.6 2.7E+02 0.0058 26.6 18.2 161 268-439 98-267 (297)
358 PF07163 Pex26: Pex26 protein; 45.9 2.3E+02 0.005 28.1 10.2 87 99-185 90-181 (309)
359 KOG1464 COP9 signalosome, subu 45.9 3.1E+02 0.0066 27.0 17.5 59 238-296 149-218 (440)
360 KOG4648 Uncharacterized conser 45.9 1.2E+02 0.0027 30.8 8.5 50 278-329 106-156 (536)
361 TIGR03504 FimV_Cterm FimV C-te 45.6 49 0.0011 22.4 4.1 22 416-437 6-27 (44)
362 TIGR03504 FimV_Cterm FimV C-te 44.7 45 0.00097 22.6 3.8 23 345-367 5-27 (44)
363 PF11663 Toxin_YhaV: Toxin wit 44.7 22 0.00048 30.7 2.8 31 139-171 107-137 (140)
364 PF09477 Type_III_YscG: Bacter 44.6 1.8E+02 0.004 24.2 7.8 86 319-412 21-106 (116)
365 PF10366 Vps39_1: Vacuolar sor 44.2 97 0.0021 25.9 6.7 27 376-402 41-67 (108)
366 COG5108 RPO41 Mitochondrial DN 43.0 1.8E+02 0.0039 32.4 9.8 75 309-386 33-115 (1117)
367 COG5159 RPN6 26S proteasome re 42.6 3.6E+02 0.0077 26.9 16.0 219 168-401 9-253 (421)
368 COG4785 NlpI Lipoprotein NlpI, 42.4 3.1E+02 0.0068 26.2 20.5 182 70-264 74-267 (297)
369 PF14853 Fis1_TPR_C: Fis1 C-te 41.9 1.2E+02 0.0026 21.5 5.8 36 416-453 8-43 (53)
370 KOG4234 TPR repeat-containing 41.1 3.1E+02 0.0068 25.8 10.0 18 349-366 178-195 (271)
371 cd08819 CARD_MDA5_2 Caspase ac 40.4 1.2E+02 0.0027 24.0 6.1 33 74-107 49-81 (88)
372 smart00777 Mad3_BUB1_I Mad3/BU 40.4 85 0.0018 27.0 5.8 42 43-84 81-122 (125)
373 PF11663 Toxin_YhaV: Toxin wit 40.3 30 0.00066 29.9 3.0 31 387-419 108-138 (140)
374 PF11848 DUF3368: Domain of un 40.1 91 0.002 21.5 4.9 32 420-451 13-44 (48)
375 KOG4077 Cytochrome c oxidase, 39.5 2.1E+02 0.0046 24.6 7.7 47 287-333 67-113 (149)
376 PF11848 DUF3368: Domain of un 39.1 1.1E+02 0.0025 21.0 5.3 31 316-346 14-44 (48)
377 PF10579 Rapsyn_N: Rapsyn N-te 38.9 95 0.0021 24.2 5.2 46 174-219 18-65 (80)
378 PF04097 Nic96: Nup93/Nic96; 38.8 6.4E+02 0.014 28.7 18.7 88 276-368 265-356 (613)
379 PF06552 TOM20_plant: Plant sp 38.7 3.2E+02 0.007 25.3 10.9 46 390-443 96-141 (186)
380 TIGR01503 MthylAspMut_E methyl 38.4 1.7E+02 0.0037 31.2 8.6 144 318-468 68-236 (480)
381 PF04190 DUF410: Protein of un 38.1 4.1E+02 0.0089 26.3 16.2 25 126-150 89-113 (260)
382 PF14561 TPR_20: Tetratricopep 37.4 1.2E+02 0.0026 24.3 6.0 35 21-55 18-52 (90)
383 PF10579 Rapsyn_N: Rapsyn N-te 37.1 1E+02 0.0023 24.0 5.1 46 386-431 18-65 (80)
384 KOG2471 TPR repeat-containing 36.1 5.9E+02 0.013 27.6 12.6 105 349-455 250-380 (696)
385 PF11846 DUF3366: Domain of un 35.7 1.5E+02 0.0033 27.6 7.5 32 371-402 141-172 (193)
386 smart00028 TPR Tetratricopepti 35.4 69 0.0015 18.1 3.6 22 379-400 6-27 (34)
387 PF14689 SPOB_a: Sensor_kinase 34.8 79 0.0017 23.3 4.2 23 379-401 28-50 (62)
388 PRK14700 recombination factor 34.5 3.9E+02 0.0084 27.0 10.1 46 274-319 128-176 (300)
389 KOG4234 TPR repeat-containing 34.2 4.1E+02 0.0088 25.1 10.4 92 315-410 106-202 (271)
390 COG5108 RPO41 Mitochondrial DN 32.8 3E+02 0.0066 30.8 9.5 91 167-262 33-131 (1117)
391 PRK10564 maltose regulon perip 32.5 79 0.0017 31.7 4.9 37 377-413 260-296 (303)
392 COG2909 MalT ATP-dependent tra 32.4 8.8E+02 0.019 28.5 27.1 25 344-368 623-647 (894)
393 PRK10564 maltose regulon perip 31.8 86 0.0019 31.4 5.1 30 165-194 260-289 (303)
394 cd00280 TRFH Telomeric Repeat 31.1 4.4E+02 0.0095 24.5 9.4 22 99-120 118-139 (200)
395 PF14853 Fis1_TPR_C: Fis1 C-te 30.8 1.6E+02 0.0036 20.8 5.0 34 380-415 7-40 (53)
396 COG5187 RPN7 26S proteasome re 30.7 5.6E+02 0.012 25.7 12.4 98 376-473 117-224 (412)
397 PF11846 DUF3366: Domain of un 29.8 2.2E+02 0.0048 26.5 7.5 34 335-368 140-173 (193)
398 PF04762 IKI3: IKI3 family; I 29.3 1.1E+03 0.023 28.5 15.5 198 167-400 699-927 (928)
399 PF10366 Vps39_1: Vacuolar sor 28.9 2.7E+02 0.0059 23.2 7.0 26 130-155 42-67 (108)
400 cd00280 TRFH Telomeric Repeat 28.6 3.7E+02 0.0081 24.9 8.0 22 346-367 118-139 (200)
401 COG0735 Fur Fe2+/Zn2+ uptake r 28.5 3.4E+02 0.0073 24.1 7.9 45 116-161 10-54 (145)
402 KOG2063 Vacuolar assembly/sort 28.3 1.1E+03 0.023 28.1 19.2 19 35-53 356-374 (877)
403 PRK00423 tfb transcription ini 27.8 4.6E+02 0.01 26.7 9.9 31 485-515 239-273 (310)
404 KOG1308 Hsp70-interacting prot 27.7 28 0.0006 35.3 1.0 86 75-162 128-217 (377)
405 KOG4507 Uncharacterized conser 27.0 4.4E+02 0.0096 29.2 9.5 132 251-385 590-721 (886)
406 KOG1586 Protein required for f 26.9 6E+02 0.013 24.7 21.9 91 385-475 165-263 (288)
407 PRK13342 recombination factor 26.9 8E+02 0.017 26.2 19.0 46 272-317 230-278 (413)
408 KOG4507 Uncharacterized conser 26.9 4.1E+02 0.0089 29.4 9.2 57 168-225 648-704 (886)
409 cd08326 CARD_CASP9 Caspase act 26.6 3E+02 0.0064 21.8 6.4 62 45-111 19-80 (84)
410 KOG0686 COP9 signalosome, subu 26.4 7.9E+02 0.017 26.0 14.8 92 374-467 231-329 (466)
411 KOG0403 Neoplastic transformat 26.1 8.3E+02 0.018 26.2 16.0 74 343-421 513-586 (645)
412 PF09868 DUF2095: Uncharacteri 25.9 2.5E+02 0.0053 23.6 5.8 25 133-157 67-91 (128)
413 cd08332 CARD_CASP2 Caspase act 25.3 2.8E+02 0.0061 22.2 6.2 57 46-107 24-80 (90)
414 PF02847 MA3: MA3 domain; Int 25.2 3.9E+02 0.0085 22.0 9.0 72 378-451 6-79 (113)
415 PF11338 DUF3140: Protein of u 25.0 69 0.0015 25.7 2.5 21 666-686 9-29 (92)
416 PF12862 Apc5: Anaphase-promot 24.9 2.7E+02 0.0059 22.3 6.2 23 133-155 47-69 (94)
417 KOG2297 Predicted translation 24.8 7.4E+02 0.016 25.1 17.3 16 376-391 323-338 (412)
418 PF08311 Mad3_BUB1_I: Mad3/BUB 24.7 4.5E+02 0.0098 22.6 9.9 43 110-152 81-124 (126)
419 KOG0376 Serine-threonine phosp 24.4 1.3E+02 0.0028 32.2 5.1 49 32-82 11-59 (476)
420 KOG2066 Vacuolar assembly/sort 24.4 1.1E+03 0.025 27.2 27.4 102 99-209 363-467 (846)
421 KOG3807 Predicted membrane pro 23.7 7.9E+02 0.017 25.1 10.9 130 108-250 232-364 (556)
422 PF14689 SPOB_a: Sensor_kinase 23.7 90 0.0019 23.0 2.8 31 23-53 21-51 (62)
423 PF13986 DUF4224: Domain of un 23.4 93 0.002 21.5 2.6 31 639-670 16-46 (47)
424 PF11768 DUF3312: Protein of u 23.2 1E+03 0.023 26.3 11.7 21 168-188 414-434 (545)
425 PF12862 Apc5: Anaphase-promot 23.1 3.7E+02 0.008 21.5 6.7 18 384-401 51-68 (94)
426 KOG0687 26S proteasome regulat 22.8 8.4E+02 0.018 25.0 16.0 29 445-473 184-213 (393)
427 COG2909 MalT ATP-dependent tra 22.6 1.3E+03 0.028 27.2 26.6 252 75-329 394-684 (894)
428 PF09670 Cas_Cas02710: CRISPR- 22.3 9.3E+02 0.02 25.4 12.7 52 280-332 142-197 (379)
429 COG0735 Fur Fe2+/Zn2+ uptake r 22.1 4.2E+02 0.0091 23.4 7.3 45 274-318 25-69 (145)
430 PF10255 Paf67: RNA polymerase 21.3 9.9E+02 0.021 25.4 10.9 130 25-154 37-191 (404)
431 KOG3677 RNA polymerase I-assoc 21.1 1E+03 0.022 25.3 11.7 62 200-261 238-299 (525)
432 COG1747 Uncharacterized N-term 21.1 1.1E+03 0.024 25.8 25.7 48 161-210 65-112 (711)
433 PF08424 NRDE-2: NRDE-2, neces 21.1 9E+02 0.02 24.7 18.0 62 144-207 48-109 (321)
434 PF11838 ERAP1_C: ERAP1-like C 21.1 8.7E+02 0.019 24.5 19.0 190 99-294 45-262 (324)
435 PF10475 DUF2450: Protein of u 21.0 8.6E+02 0.019 24.5 10.3 111 168-294 104-222 (291)
436 KOG4567 GTPase-activating prot 20.9 7.5E+02 0.016 25.1 9.1 43 290-332 264-306 (370)
437 KOG1166 Mitotic checkpoint ser 20.5 2.4E+02 0.0051 33.7 6.7 61 28-88 81-141 (974)
438 KOG4521 Nuclear pore complex, 20.2 1.6E+03 0.036 27.4 14.9 131 35-179 930-1071(1480)
439 KOG2908 26S proteasome regulat 20.2 9.6E+02 0.021 24.7 10.1 80 136-215 84-175 (380)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.3e-117 Score=1008.44 Aligned_cols=692 Identities=77% Similarity=1.226 Sum_probs=674.7
Q ss_pred CCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 005130 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (713)
Q Consensus 22 ~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (713)
+.+..+++..|+.|++.|++++|+++|++|.+.|+++++..++..++..|.+.|.+++|+++|+.|+.||..+||.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005130 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (713)
|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005130 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (713)
Q Consensus 182 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 261 (713)
+++|++|.+.|+.||.++|+.||.+|++.|++++|.++|++|.....++.||.++|+++|.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987556899999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005130 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (713)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 341 (713)
+.++.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005130 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (713)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (713)
|++||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCCccccccHHHHHHHHHHHHHcCCCcc
Q 005130 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT 501 (713)
Q Consensus 422 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~P~ 501 (713)
.|++++|.++|++|.+.|+.||..+|++||++|.+++++|+.+.++...|+.+.+.+...|+.+|+.+|++|++.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999988899999999999999998888889999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHcCCCcccccccccccchhcccccchHHHHHHHHHHhCCCCCCcccCCCCeeecc
Q 005130 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDA 581 (713)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~~~~~~~ 581 (713)
.+||+.+|+|+...++.+++..|.+.+++.+...++..|+++++++|.+.++|+.++++|..+|++|+.+++.+.|++|.
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~ 926 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDA 926 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEc
Confidence 99999999999999999999999999999999999999999999999888899999999999999999998777999999
Q ss_pred ccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccCCccceeccCCchhhhhhhhhhHHHHHHHHHhCCCCCCCCccc
Q 005130 582 RKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYG 661 (713)
Q Consensus 582 ~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~g 661 (713)
+++++++|++++++||+.|+++++++.++|++.+++|++++++.++.|+++++..++++++|.+|||||++|||++++.|
T Consensus 927 ~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~g 1006 (1060)
T PLN03218 927 EELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESHG 1006 (1060)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEechHhHHhhhcCcCCCCCCCCCCCCch--hhhhhhHHHHHhhhhccCCcCC
Q 005130 662 KIRINGLALKRWFQPKLASPFSGKPGELSS--LQLGKFITHQQRNIRTGNLSLE 713 (713)
Q Consensus 662 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 713 (713)
||+++|+++++|||+|.++||+++|+++++ ++|||+|+|||||||+||+|||
T Consensus 1007 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1060)
T PLN03218 1007 KLRINGLSLRRWFQPKLKSPFSGKPEDLSSSQSRLGKGIADQQRAIRLGNLSLE 1060 (1060)
T ss_pred eEEeccHHHHHHhcccCCCCCCCCccccccchhhhhhhHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999774 9999999999999999999996
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.8e-81 Score=729.08 Aligned_cols=583 Identities=19% Similarity=0.278 Sum_probs=490.0
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 005130 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (713)
Q Consensus 27 ~~~~~~~~L~----~~g~~~~A~~l~~~m~~~~~~~~~~~~----------------------------------~~~l~ 68 (713)
++.++||.++ +.|++++|+++|++|...|+.|+...+ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 4556666655 899999999999999998877654333 34456
Q ss_pred HHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005130 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (713)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 148 (713)
..+.+.|++++|.++|+.|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 005130 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (713)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (713)
++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||.++||++|.+|++.|++++|+++|++|...
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999999999999988888888888888888888888875 467777777777777777777777777777654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH--------------------
Q 005130 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA-------------------- 288 (713)
Q Consensus 229 ~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A-------------------- 288 (713)
++.||..||++++.+|++.|+++.|.++++.|.+.|+.++..+||+||++|++.|++++|
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 566666666666666666666666666666666666655555555555555555555555
Q ss_pred -----------HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005130 289 -----------CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (713)
Q Consensus 289 -----------~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 357 (713)
+.+|++|.. ++.||..||++++.+|++.|.++.+.+++..+.+.|+.+|..++|+||++|+++|++++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 455555543 47888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 005130 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK- 436 (713)
Q Consensus 358 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~- 436 (713)
|.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.
T Consensus 543 A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 543 AWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 99999987 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCCccccccHHHHHHHHHHHHHcCCCccHHHHHHHHhhcCCCC
Q 005130 437 EDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 516 (713)
Q Consensus 437 ~~g~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~P~~~~~~~~l~~~~~~~ 516 (713)
+.|+.|+..+|+||+++|+| +|++.+ |.+++++| +++||..+|++++++|+.++
T Consensus 618 ~~gi~P~~~~y~~lv~~l~r----~G~~~e-------------------A~~~~~~m---~~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 618 KYSITPNLKHYACVVDLLGR----AGKLTE-------------------AYNFINKM---PITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HhCCCCchHHHHHHHHHHHh----CCCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 57999999999999999876 333333 44556665 47999999999999999999
Q ss_pred chhHHHHHHHHc-CCCcc-cccccccccchhcccccchHHHHHHHHHHhCCCC--CCcccCCC----CeeeccccCcchH
Q 005130 517 NADIRERLVENL-GVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIV--PCVSFKEI----PVVVDARKLEIHT 588 (713)
Q Consensus 517 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~g~~--p~~~~~~~----~~~~~~~~~~~~~ 588 (713)
+.++++.+.+.+ .+.|+ +..|..+.+++...|+|++ |.+++++|+++|+. ||+||++. |.|+.+|++||++
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~-a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~ 750 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE-VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH-HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcch
Confidence 999999887654 34443 3333334567888999987 55999999999996 99999864 7889999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCCeEEEccC---CccceeccCCchh------hhhhhhhhHHHHHHHHHh
Q 005130 589 AKVYLLTILKGLRHRLAAGAKLPNVNILLPV---EKTQIMSVGGEKT------IDIAERTTQAIAALLRRL 650 (713)
Q Consensus 589 ~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~---~~~~~~~~~~~~~------~~~~~~~~~~v~~~l~~~ 650 (713)
.+||. .|+.|..+|++.||+||+.+++++ +|+..+++||||+ ++++++++++|.||||-+
T Consensus 751 ~~i~~--~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c 819 (857)
T PLN03077 751 KEINT--VLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMC 819 (857)
T ss_pred HHHHH--HHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeC
Confidence 99997 999999999999999999998876 5899999999998 888999999999999954
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-76 Score=674.93 Aligned_cols=519 Identities=21% Similarity=0.308 Sum_probs=482.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005130 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (713)
.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+||++
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~l 195 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTI 195 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999997 6899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcC
Q 005130 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (713)
Q Consensus 169 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g 248 (713)
|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+. ++.||..+|++|+++|+++|
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT--GVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh--CCCccceeHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999875 88999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (713)
Q Consensus 249 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 328 (713)
++++|.++|+.|.+ +|..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|.
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999975 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005130 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (713)
Q Consensus 329 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (713)
.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||..+||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999997 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCCccccccHHHHH
Q 005130 409 TITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 487 (713)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~ 487 (713)
.+||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|++||++|++ +|++.+ |.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~~e-------------------A~ 482 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EGLLDE-------------------AY 482 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cCCHHH-------------------HH
Confidence 99999999999999999999999999986 5999999999999999876 343433 33
Q ss_pred HHHHHHHHcCCCccHHHHHHHHhhcCCCCchhHHHHHHHH-cCCCcc-cccccccccchhcccccchHHHHHHHHHHhCC
Q 005130 488 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN-LGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFG 565 (713)
Q Consensus 488 ~~~~~m~~~g~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~g 565 (713)
++|++| ++.||..+|++++++|+.+++.+.++.+.+. +++.|+ ...|..+.+++...|+|++ |.+++++|.++|
T Consensus 483 ~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~-A~~v~~~m~~~g 558 (697)
T PLN03081 483 AMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE-AAKVVETLKRKG 558 (697)
T ss_pred HHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHH-HHHHHHHHHHcC
Confidence 444443 6899999999999999999999988887765 455554 4566666677888899976 779999999999
Q ss_pred CC--CCcccCCC----CeeeccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccC----CccceeccCCchh---
Q 005130 566 IV--PCVSFKEI----PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPV----EKTQIMSVGGEKT--- 632 (713)
Q Consensus 566 ~~--p~~~~~~~----~~~~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~----~~~~~~~~~~~~~--- 632 (713)
+. ||++|++. |.|+.+|.+||++.+||. .|+.|..+|++.||+||+.+++|| +|+..+++||||+
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~--~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a 636 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ--KLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIA 636 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHH--HHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHH
Confidence 95 99999754 689999999999999997 999999999999999999999998 6888999999998
Q ss_pred ---hhhhhhhhHHHHHHHHHh
Q 005130 633 ---IDIAERTTQAIAALLRRL 650 (713)
Q Consensus 633 ---~~~~~~~~~~v~~~l~~~ 650 (713)
++++++++++|.||||-+
T Consensus 637 ~~l~~~~~~~~i~i~knlr~c 657 (697)
T PLN03081 637 FGLINTSEWTPLQITQSHRIC 657 (697)
T ss_pred hhCccCCCCCeEEEecCCEEC
Confidence 888899999999999954
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.8e-66 Score=602.94 Aligned_cols=518 Identities=19% Similarity=0.290 Sum_probs=451.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHHHHHHhh
Q 005130 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFFNVCKSQ 74 (713)
Q Consensus 29 ~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~----------------------------------~~~l~~~~~~~ 74 (713)
......|++.|++++|+.+|++|.+.|+.|....+ ...++..+.+.
T Consensus 55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~ 134 (857)
T PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC
Confidence 44455667999999999999999998765443322 13344456678
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH------------------------
Q 005130 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY------------------------ 130 (713)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~------------------------ 130 (713)
|+++.|.++|+.|++||+++||++|.+|++.|++++|+++|++|...|+.||.+||
T Consensus 135 g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 214 (857)
T PLN03077 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214 (857)
T ss_pred CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999988887776
Q ss_pred -----------HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005130 131 -----------TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (713)
Q Consensus 131 -----------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 199 (713)
++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||.+|
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 455666677777778888887775 56788888888888888888888888888888889999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005130 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (713)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 279 (713)
|+.+|.+|++.|+.+.|.+++..|... |+.||..+|++|+.+|+++|++++|.++|+.|.. ||..+||++|.+|
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~ 364 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGY 364 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999999988875 7889999999999999999999999999999864 5678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005130 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (713)
Q Consensus 280 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 359 (713)
++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++++.|.+.|+.|+..+||+||++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005130 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (713)
Q Consensus 360 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 439 (713)
++|++|. .+|..+||+||.+|+++|+.++|+++|++|.. ++.||.+||+++|.+|++.|.++.+.+++..+.+.|
T Consensus 445 ~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 9999998 58999999999999999999999999999986 599999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCCccccccHH------------HHHHHHHHHHHcCCCccHHHHHH
Q 005130 440 VIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSK 507 (713)
Q Consensus 440 ~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~------------~A~~~~~~m~~~g~~P~~~~~~~ 507 (713)
+.+|..++++||++|++ +|++.+|...|+.+ ..+..+|+. +|+.+|++|...|+.||.+||..
T Consensus 520 ~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 520 IGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred CCccceechHHHHHHHH----cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 99999999999999654 67777777777776 667777876 59999999999999999999999
Q ss_pred HHh-hcCCC---CchhHHHHHHHHcCCCcccccccccccchhcccccchHHHHHHHHHHhCCCCCCc
Q 005130 508 VLG-CLQLP---YNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570 (713)
Q Consensus 508 ~l~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~g~~p~~ 570 (713)
++. |++.+ ...++++.|.+.+|+.|+..+|+++..++...|+++ +|.+++++| .+.|+.
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~-eA~~~~~~m---~~~pd~ 657 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT-EAYNFINKM---PITPDP 657 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH-HHHHHHHHC---CCCCCH
Confidence 984 55433 345678888888999999999986555555566554 488888887 355654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-61 Score=554.69 Aligned_cols=465 Identities=23% Similarity=0.399 Sum_probs=418.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHhC
Q 005130 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASS 105 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 105 (713)
..++.+.+.|.+++|+.+|+.|.. | +...+..++..|.+.|++++|.++|+.|. .||..+||++|.+|++.
T Consensus 411 ~li~~~~~~g~~~eAl~lf~~M~~----p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~ 485 (1060)
T PLN03218 411 KFFKACKKQRAVKEAFRFAKLIRN----P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCC----C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 344556689999999999999974 3 45556678888999999999999999874 68999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005130 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 185 (713)
|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|
T Consensus 486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005130 186 GIMRS--KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (713)
Q Consensus 186 ~~m~~--~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 263 (713)
++|.. .|+.||.++|++||.+|++.|++++|.++|++|... ++.|+..+|+++|.+|++.|++++|.++|++|.+.
T Consensus 566 ~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 99976 678999999999999999999999999999999875 88999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005130 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (713)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 343 (713)
|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+||
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN 723 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 005130 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-- 421 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-- 421 (713)
+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|.+|.+.|+.||..+|++++..|.+
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y 803 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF 803 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred --c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHHHHHhhhccCCCCcc
Q 005130 422 --K-------------------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI 478 (713)
Q Consensus 422 --~-------------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~ 478 (713)
. +..++|..+|++|++.|+.||..+|+.+|.++.. ....+..+.+.+.. .. ...+
T Consensus 804 ~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~-~~~~ 881 (1060)
T PLN03218 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SA-DSQK 881 (1060)
T ss_pred HHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CC-CCcc
Confidence 1 2347899999999999999999999999965533 34444444432211 01 1111
Q ss_pred c----------cccHHHHHHHHHHHHHcCCCccHH
Q 005130 479 E----------NKWTSLALMVYREAIVAGTIPTVE 503 (713)
Q Consensus 479 ~----------~~~~~~A~~~~~~m~~~g~~P~~~ 503 (713)
. ..+..+|+.+|++|...|+.|+..
T Consensus 882 ~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 882 QSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 1 123457999999999999999874
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-56 Score=510.58 Aligned_cols=403 Identities=18% Similarity=0.262 Sum_probs=205.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHhCCChHHH
Q 005130 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A 111 (713)
.+.|++++|+++|++|...+....+...+..++..|.+.++++.|.+++..+. .||..+||.++.+|++.|+++.|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 35555555555555555443222233333344444444445555555444332 34555555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005130 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 112 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
.++|+.|. .||.++||++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+.
T Consensus 178 ~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 178 RRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred HHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 55555543 24455555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 005130 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (713)
Q Consensus 192 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 271 (713)
|+.||..+||+||.+|++.|++++|.++|++|. .+|.++||++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 555555555555555555555555555555443 23445555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005130 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
|++++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555554432 344555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005130 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLM 430 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 430 (713)
.|+.++|.++|++|.+.|+.||..||+++|.+|++.|..++|.++|++|.+ .|+.|+..+|+.++.++++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 555555555555555555555555555555555555555555555555543 3455555555555555555555555554
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH
Q 005130 431 LLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 431 ~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
++++| ++.|+..+|++|+++|.
T Consensus 484 ~~~~~---~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 484 MIRRA---PFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHC---CCCCCHHHHHHHHHHHH
Confidence 44322 34455555555555544
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=4.3e-24 Score=254.31 Aligned_cols=509 Identities=16% Similarity=0.076 Sum_probs=313.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHH
Q 005130 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEG 110 (713)
Q Consensus 34 ~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 110 (713)
.+.+.|++++|+..++.+...+ |.+......+...+...|++++|.++|+.+. +.+...|..+...+...|++++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Confidence 3345566666666665555443 3334444445555555566666666665432 2344455555555666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005130 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (713)
Q Consensus 111 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 190 (713)
|...++.+.+.. +.+......++..+.+.|++++|.++++.+.... +.+..+|..+...|...|++++|...|+++.+
T Consensus 416 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 416 AIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 666666655543 1223344455566666666666666666665542 34566677777777777777777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH
Q 005130 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (713)
Q Consensus 191 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 270 (713)
.. +.+...+..+...+...|++++|.+.|+++... .+.+..++..+...+.+.|+.++|..+|+.+.+.+ +.+..
T Consensus 494 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 568 (899)
T TIGR02917 494 IE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIE 568 (899)
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchh
Confidence 53 334556666777777777777777777777653 13355667777777777777777777777776654 44556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005130 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 350 (713)
.+..++..|.+.|++++|..+++.+..... .+..+|..+..+|...|++++|...++.+.+.. +.+...+..+..+|.
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA 646 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 677777777888888888888877776543 356677777888888888888888888777654 345667777778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005130 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430 (713)
Q Consensus 351 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 430 (713)
+.|++++|..+|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|..
T Consensus 647 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888777643 3456777888888888888888888888877653 3456667777778888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHHHHHhhhccCCCCcccc------------ccHHHHHHHHHHHHHc
Q 005130 431 LLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIEN------------KWTSLALMVYREAIVA 496 (713)
Q Consensus 431 ~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~~~------------~~~~~A~~~~~~m~~~ 496 (713)
.|+.+.+.+ |+..++..+..++.+ ++++|....+...... |.+.. +-...|...|++++..
T Consensus 725 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 725 AYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 888877643 444555555555443 4555544433222211 11111 1123478888888764
Q ss_pred CCCccHH-HHHHHH-hhcCCCCchhHHHHHHHHcCCCcc-cccccccccchhcccccchHHHHHHHHHHhC
Q 005130 497 GTIPTVE-VVSKVL-GCLQLPYNADIRERLVENLGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASF 564 (713)
Q Consensus 497 g~~P~~~-~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~ 564 (713)
.|+.. ++..+. .+...+. .+..+.+.+.+...|+ +..+.++..++-..|++++ |...++.+.+.
T Consensus 800 --~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-A~~~~~~a~~~ 866 (899)
T TIGR02917 800 --APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR-ALPLLRKAVNI 866 (899)
T ss_pred --CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH-HHHHHHHHHhh
Confidence 34443 333322 1222222 3333333333333443 2222223344455666544 77888888755
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=4.4e-24 Score=254.27 Aligned_cols=512 Identities=13% Similarity=0.058 Sum_probs=398.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCC
Q 005130 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 106 (713)
.....+.+.|++++|.+.|+++.+.. |.+...+..+...+...|+.++|++.|+.+. +.+...+..++..+.+.|
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 445 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG 445 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcC
Confidence 33445568999999999999998876 6666677777788888899999999998653 234456677788899999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005130 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (713)
Q Consensus 107 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 186 (713)
++++|..+++.+.... +++..++..+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 446 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998753 5678889999999999999999999999998764 3456778889999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005130 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (713)
Q Consensus 187 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 266 (713)
++.... +.+..++..+...+.+.|+.++|..++.++... .+.+...+..+...|.+.|++++|..+++.+.+.. +
T Consensus 524 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 524 KVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred HHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 998764 457788899999999999999999999998754 24456678889999999999999999999998755 6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005130 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (713)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 346 (713)
.+..+|..+...|...|++++|...|+++.+.... +...+..+..++...|++++|...+..+.+.. +.+..++..+.
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 67889999999999999999999999999876543 66778889999999999999999999998764 45678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005130 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (713)
Q Consensus 347 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (713)
..+.+.|++++|.++++.+.+.. +++...+..+...|...|++++|++.|+++... .|+..++..+..++.+.|+++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHH
Confidence 99999999999999999998765 457778888999999999999999999999875 466678888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHHHHHhhhccCCCCccccccH-----------HHHHHHHHHH
Q 005130 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT-----------SLALMVYREA 493 (713)
Q Consensus 427 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~~~~~~-----------~~A~~~~~~m 493 (713)
+|.+.++.+.+.. ..+...+..+..+|.. .+++|....+......+ .+...+. ..|+..+++.
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~A~~~~~~~ 829 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP---DNAVVLNNLAWLYLELKDPRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999988753 3456677777777653 56666665544333222 2111111 3488888888
Q ss_pred HHcCCCccHHHHHHHHhhc--CCCCchhHHHHHHHHcCCCc-ccccccccccchhcccccchHHHHHHHHHH
Q 005130 494 IVAGTIPTVEVVSKVLGCL--QLPYNADIRERLVENLGVSA-DALKRSNLCSLIDGFGEYDPRAFSLLEEAA 562 (713)
Q Consensus 494 ~~~g~~P~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~ 562 (713)
+.. .|+.......++.+ ..+.-.+..+.+.+.+...| ++..+.++...+...|++++ |..+++.++
T Consensus 830 ~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 898 (899)
T TIGR02917 830 LKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE-ARKELDKLL 898 (899)
T ss_pred Hhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHh
Confidence 764 56655443334332 23332333333333343344 45555555556666787654 778888764
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=5.3e-20 Score=196.91 Aligned_cols=302 Identities=13% Similarity=0.106 Sum_probs=171.9
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCC
Q 005130 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 177 (713)
.+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455677777777777777653 33445667777777777777777777777765432211 2456666777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 005130 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAR 254 (713)
Q Consensus 178 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~~~~~ll~~~~~~g~~~~A~ 254 (713)
+++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.... +..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 777777777776542 3455666777777777777777777777665431 11111 112334455555666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005130 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (713)
Q Consensus 255 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 334 (713)
..|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+......++..++.+|.+.|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666665543 233445555566666666666666666666554322223345555555555555555555555555442
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHH
Q 005130 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTI 410 (713)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~ 410 (713)
|+...+..+...+.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.++++.+|++|.+.++.|++.
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 33334455555555555555555555555443 3555555555554443 335555555555555544444443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3.9e-19 Score=190.22 Aligned_cols=303 Identities=17% Similarity=0.110 Sum_probs=254.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 005130 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD---RVVFNALITACGQS 210 (713)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~li~~~~~~ 210 (713)
...+...|++++|...|.++.+.+ +.+..++..+...|...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445667899999999999999874 33567899999999999999999999999987642222 25678889999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHH
Q 005130 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWE 286 (713)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~ 286 (713)
|++++|..+|.++... .+++..++..++..|.+.|++++|.+.++.+.+.+..+. ...|..+...+.+.|+++
T Consensus 121 g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999763 245678899999999999999999999999988653332 224567888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 287 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
+|...|+++.+.... +...+..+...+.+.|++++|.+++.++.+.+......+++.++.+|.+.|++++|...++.+.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999886532 4667888889999999999999999999886533335678999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 005130 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPN 443 (713)
Q Consensus 367 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~g~~p~ 443 (713)
+. .|+...+..++..+.+.|++++|+.+|+++.+. .|+..++..++..+.. .|+.+++..++++|.+.++.|+
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 76 577777789999999999999999999998874 7999999988887765 5689999999999998877776
Q ss_pred HH
Q 005130 444 LV 445 (713)
Q Consensus 444 ~~ 445 (713)
..
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 65
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=4.2e-18 Score=173.60 Aligned_cols=421 Identities=13% Similarity=0.114 Sum_probs=324.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHh
Q 005130 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCAS 104 (713)
Q Consensus 28 ~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~ 104 (713)
.+.+...+.+.|++.+|.+.....-..+ |.+.....++...+.+..+.+.....-.. ..+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 4445566779999999998887766655 33333333344444444444444332221 223456789999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHH
Q 005130 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCAKAGQVAKAFG 183 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~ 183 (713)
.|+++.|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+. .|+.....+ +.......|++.+|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999999864 335678999999999999999999999998876 566554443 4444555799999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005130 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHK 262 (713)
Q Consensus 184 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 262 (713)
.|.+..+.. +-=.+.|+.|...+-..|+...|++.|++... ++|+ ...|-.|...|...+.+++|...|.....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 999888762 22367788999999999999999999998874 4555 45788899999999999999999988776
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005130 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (713)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 342 (713)
.. +...+++..|...|...|..+.|+..|++..+.... =...|+.|..++-..|++.+|.+.+....... +......
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 54 445678888888999999999999999998876433 24689999999999999999999999988864 3346788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 005130 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACE 420 (713)
Q Consensus 343 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~ 420 (713)
+.|...|...|.+++|..+|....+. .|. ....|.|...|-+.|+.++|+..+++.++ +.|+- ..|+.+-..|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 89999999999999999999988764 455 45788999999999999999999999887 78874 67888889999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhhHHHHHHHHHHhhhc
Q 005130 421 RKDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGMCSRRYEKARTLNEHVLSF 471 (713)
Q Consensus 421 ~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~r~~~~a~~l~~a~~~~ 471 (713)
..|+++.|.+.+.+.+. +.|...- .+.|-.. +.++|.+.+|+.+|
T Consensus 434 e~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi----~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASI----YKDSGNIPEAIQSY 479 (966)
T ss_pred HhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHH----hhccCCcHHHHHHH
Confidence 99999999999988887 4565432 3333333 55666666655443
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=9.6e-17 Score=192.97 Aligned_cols=387 Identities=12% Similarity=0.057 Sum_probs=295.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCC---HHHHHH-----------
Q 005130 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT---LSTFNM----------- 97 (713)
Q Consensus 34 ~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~---~~~~~~----------- 97 (713)
.++..|++++|+..|++..+.. |.+...+..+...+.+.|+.++|+..|++.. .|+ ...|..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4557899999999999999876 7777778888888888999999999988653 222 222222
Q ss_pred -HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005130 98 -LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (713)
Q Consensus 98 -li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (713)
....+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 2345678899999999999998874 4466778888999999999999999999988764 234666777777774 46
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-CHHHHHHHHHHHHHc
Q 005130 177 QVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANA 247 (713)
Q Consensus 177 ~~~~A~~l~~~m~~~g~~--------pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~~~~~ll~~~~~~ 247 (713)
+.++|+.+++.+...... .....+..+...+...|++++|.+.|++.... .| +...+..+...|.+.
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc
Confidence 789998888765432100 01123455667788899999999999998764 34 456777888899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcC
Q 005130 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAG 318 (713)
Q Consensus 248 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~li~~~~~~g 318 (713)
|++++|...|+.+.+.. +.++..+..+...+...++.++|+..++.+......++.. .+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999988754 4456666666667788999999999998865443322221 1234566788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005130 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (713)
Q Consensus 319 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (713)
+.++|..+++. .+.+...+..+...|.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999998872 24566777889999999999999999999998763 4467889999999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 399 DMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 399 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
...+. .| +..++..+..++...|++++|.++++.+.+.
T Consensus 662 ~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 662 KLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 87763 45 4455666778888999999999999998874
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=3.1e-15 Score=180.06 Aligned_cols=373 Identities=16% Similarity=0.127 Sum_probs=220.3
Q ss_pred CCCCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH----------------HHHHHHHHhhHHHHHHHHH
Q 005130 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRF 83 (713)
Q Consensus 20 ~~~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~ 83 (713)
-.|.++.........+++.|+.++|.+.++++.+.. |.+..++ ....+.+...|++++|++.
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~ 134 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALAS 134 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHH
Confidence 345556666666666778899999999999988876 4443332 1223355667888999888
Q ss_pred hhhCC---CCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-
Q 005130 84 FKLVP---NPTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI- 158 (713)
Q Consensus 84 ~~~~~---~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 158 (713)
|+... +++.. ............|+.++|...++++.+.. +.+...+..+...+...|+.++|++.++++.+...
T Consensus 135 ~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~ 213 (1157)
T PRK11447 135 YDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG 213 (1157)
T ss_pred HHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc
Confidence 88754 23321 11111222234588888999998888764 44666777888888888888888888888754311
Q ss_pred -----------------C--------------CCHHHH---------------------HHHHHHHHHcCCHHHHHHHHH
Q 005130 159 -----------------E--------------PNVHTY---------------------GALIDGCAKAGQVAKAFGAYG 186 (713)
Q Consensus 159 -----------------~--------------~~~~~~---------------------~~li~~~~~~g~~~~A~~l~~ 186 (713)
. |+.... ......+...|++++|+..|+
T Consensus 214 ~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 214 RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0 000000 011234566788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHH------------HHHHHHHHHcCCHHHHH
Q 005130 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRAR 254 (713)
Q Consensus 187 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~------------~~ll~~~~~~g~~~~A~ 254 (713)
+..+.. +.+...+..+...+.+.|++++|...|++...... -.++...+ ......+.+.|++++|.
T Consensus 294 ~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p-~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 294 QAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDP-HSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 887763 34677788888888888888888888888765321 11111111 12234567888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005130 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (713)
Q Consensus 255 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 334 (713)
..|+++.+.. +.+...+..+...|...|++++|++.|++..+.... +...+..+...|. .++.++|...++.+....
T Consensus 372 ~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~ 448 (1157)
T PRK11447 372 RLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQ 448 (1157)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH
Confidence 8888888765 456677778888888888888888888888776432 3334444433332 223344443333221110
Q ss_pred C--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005130 335 I--------SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 335 ~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
. ......+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...|+++.
T Consensus 449 ~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 449 RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 0001122233334444444455554444444331 1123334444444444445555544444444
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=7.9e-16 Score=173.22 Aligned_cols=322 Identities=9% Similarity=0.015 Sum_probs=164.5
Q ss_pred HHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 005130 70 VCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (713)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 146 (713)
.+.+.|++++|+.+++.+. +.+...+..++.++...|+++.|...++.+.+.. +.+...+..+...+...|++++|
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 3344455555555554331 2223333344444445566666666666555542 23344555555555566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 005130 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (713)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (713)
...|++..+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+.+.|++++|...++.+...
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 66666655542 22344555555556666666666666655544321 122222222 2345556666666666555432
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCC
Q 005130 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIP 302 (713)
Q Consensus 227 ~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p 302 (713)
. ..++...+..+...+.+.|++++|...|+...+.. +.+...+..+...|...|++++ |...|++.......
T Consensus 207 ~--~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~- 282 (656)
T PRK15174 207 F--ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD- 282 (656)
T ss_pred C--CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-
Confidence 1 11222233333445555666666666666555543 3345555556666666666553 55666665554332
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 005130 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST-MNALI 381 (713)
Q Consensus 303 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~-~~~li 381 (713)
+...+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|++++|...|+.+.+. .|+... +..+.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a 359 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAA 359 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHH
Confidence 44455555566666666666666666655543 223444555555666666666666666655543 233322 22234
Q ss_pred HHHHhCCChhHHHHHHHHHHH
Q 005130 382 TALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.++...|+.++|++.|++..+
T Consensus 360 ~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 455566666666666666544
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=2.1e-15 Score=170.26 Aligned_cols=389 Identities=13% Similarity=0.051 Sum_probs=262.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChH
Q 005130 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (713)
Q Consensus 33 ~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (713)
+.+.+.|++++|+..|++..+.. |. ..++..+...+...|++++|+..++... +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 34557889999999999888765 43 4456666777778888888888887643 446678888888888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHHHH----------------------
Q 005130 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPNVHTY---------------------- 165 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~---------------------- 165 (713)
+|+.-|......+-..+.. ...++..+... .+........+... .|.....
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9888887665543222222 22222211111 11111111111100 0000000
Q ss_pred -----HHHHHHH------HHcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC
Q 005130 166 -----GALIDGC------AKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (713)
Q Consensus 166 -----~~li~~~------~~~g~~~~A~~l~~~m~~~g-~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p 232 (713)
..++..+ ...+++++|...|++....+ ..| +...|+.+...+...|++++|+..|++.... .|
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P 362 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DP 362 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC
Confidence 0001100 12357888888888888654 223 3456777777888888999999988887653 44
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005130 233 D-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (713)
Q Consensus 233 d-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 311 (713)
+ ...|..+...+...|++++|...|+...+.+ +.+..+|..+...|...|++++|+..|++..+.... +...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHH
Confidence 4 4577777888888889999999888887765 556788888888888889999999999888876543 566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CH-HHHHHHHHHHH
Q 005130 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-----TV-STMNALITALC 385 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-----~~-~~~~~li~~~~ 385 (713)
.++.+.|++++|+..++...+.. +.+..+++.+...|...|++++|.+.|++..+..-.. +. ..++..+..+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 88888899999999888887653 4457788888888888899999999888877642111 11 11222223344
Q ss_pred hCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 386 DGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
..|++++|.+++++.... .| +...+..+...+...|++++|...|++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 468888999888887764 35 4456778888888899999998888887764
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.3e-15 Score=171.38 Aligned_cols=331 Identities=11% Similarity=0.037 Sum_probs=270.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005130 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
...++..+.+.|+++.|+.+++........ +...+..++.++...|++++|.+.|+++.... +.+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 344567788999999999999999887533 34455556677778999999999999999874 3356788889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 005130 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRA 253 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A 253 (713)
.|++++|...|+++.... +.+...+..+...+...|++++|...+..+... .|+ ...+..+ ..+...|++++|
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----~P~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE----VPPRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CCCCHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999998763 445778888999999999999999999988653 233 2333333 357889999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHH
Q 005130 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQE 329 (713)
Q Consensus 254 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~----a~~~~~~ 329 (713)
...++.+.+....++...+..+...+...|++++|...|++....... +...+..+...+...|++++ |...++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999999887654444555666778899999999999999999987644 67778889999999999986 8999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005130 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (713)
Q Consensus 330 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (713)
..+.. +.+..++..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|++.|+++... .|+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~ 351 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVT 351 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc
Confidence 98864 4467899999999999999999999999998763 334667888899999999999999999999874 5665
Q ss_pred HH-HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 410 IT-YSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 410 ~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.. +..+..++...|+.++|...|++..+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44 444567889999999999999998874
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=2.9e-15 Score=172.34 Aligned_cols=403 Identities=10% Similarity=0.002 Sum_probs=303.9
Q ss_pred hHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHH
Q 005130 28 QLHSYNR-LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCA 103 (713)
Q Consensus 28 ~~~~~~~-L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 103 (713)
.+.=|.. ....|+.++|++++.+..... |.....+..+...+...|++++|+.+|+.. .+.+...+..+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3334443 448999999999999998644 556666788888899999999999999983 3556777888889999
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005130 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (713)
Q Consensus 104 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (713)
..|++++|+..++.+.+.. +.+.. +..+..++...|+.++|+..++++.+... .+...+..+..++...+..+.|+.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999999873 44566 88899999999999999999999998753 356667778888999999999999
Q ss_pred HHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHhhhCCCCCCCCHH-HH----HHHHHHH
Q 005130 184 AYGIMRSKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMKAC 244 (713)
Q Consensus 184 l~~~m~~~g~~pd~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~~~~~~pd~~-~~----~~ll~~~ 244 (713)
.++.... .|+. .....++.... ..+++ ++|++.++.+.... ...|+.. .+ ...+.++
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHHH
Confidence 9987664 2321 11222222222 22234 77888888887531 1233321 11 1113345
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCH
Q 005130 245 ANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKV 320 (713)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~ 320 (713)
...|++++|...|+.+.+.+.+ |+ ..-..+...|...|++++|+.+|+++....... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6779999999999999887632 22 222335778999999999999999987654321 134566677788999999
Q ss_pred HHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005130 321 EAAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 321 ~~a~~~~~~m~~~g~-----------~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
++|...++.+.+... .|+ ...+..+...+...|++++|+++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 999999999887631 123 2356677888999999999999999998653 4567889999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005130 387 GDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (713)
.|++++|++.+++.... .|+ ...+......+...|++++|..+++.+++. .|+..
T Consensus 406 ~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 99999999999999874 575 556667777899999999999999999984 44443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=3.2e-15 Score=168.84 Aligned_cols=357 Identities=8% Similarity=-0.057 Sum_probs=261.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHH
Q 005130 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEG 110 (713)
Q Consensus 34 ~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 110 (713)
.+.+.|++++|++.++..++.+ |.....+..+...+...|++++|+..|.... ..+......++..+.. ..
T Consensus 169 ~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~ 242 (615)
T TIGR00990 169 CHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KF 242 (615)
T ss_pred HHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HH
Confidence 4558899999999999999876 7777777778889999999999998876432 2222222222222111 11
Q ss_pred HHHHHHHHHHcCCC--CCHH------------------------------HHHHHHHH---HHHcCChhHHHHHHHHHHH
Q 005130 111 AFQVLRLVQEAGLK--ADCK------------------------------LYTTLITT---CAKSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 111 A~~l~~~m~~~g~~--pd~~------------------------------~~~~li~~---~~~~g~~~~A~~~~~~m~~ 155 (713)
+........+.... |... .+..+... ....+++++|.+.|+....
T Consensus 243 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~ 322 (615)
T TIGR00990 243 AESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALD 322 (615)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 11111111111100 0000 00001000 0123678999999999987
Q ss_pred CC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC
Q 005130 156 AG-IEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (713)
Q Consensus 156 ~g-~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd 233 (713)
.+ ..| +...|+.+...+...|++++|+..|++..... +.+...|..+...+...|++++|...|++.... -+.+
T Consensus 323 ~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~ 398 (615)
T TIGR00990 323 LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL---NSED 398 (615)
T ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC
Confidence 65 223 45678888899999999999999999998763 234668888899999999999999999998764 1334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005130 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
..++..+...|...|++++|...|+...+.+ +.+...+..+...+.+.|++++|+..|++..+.... +...+..+..+
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~ 476 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGEL 476 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 6788889999999999999999999998876 556788889999999999999999999999876432 57788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 005130 314 AGHAGKVEAAFEILQEAKNQGISVGI------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 387 (713)
+...|++++|...|+...+.....+. ..++.....+...|++++|.+++++..+.. +.+...+..+...+.+.
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQ 555 (615)
T ss_pred HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc
Confidence 99999999999999998876422111 122333334455799999999999987653 33456789999999999
Q ss_pred CChhHHHHHHHHHHHC
Q 005130 388 DQLPKTMEVLSDMKSL 403 (713)
Q Consensus 388 g~~~~A~~l~~~m~~~ 403 (713)
|++++|++.|++..+.
T Consensus 556 g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 556 GDVDEALKLFERAAEL 571 (615)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999998763
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=2.5e-16 Score=160.79 Aligned_cols=389 Identities=14% Similarity=0.143 Sum_probs=321.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHH
Q 005130 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAF 112 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 112 (713)
.+..+++...+--....+.. |........+..+++..|++++|+++++.+. +..+..|..+..++...|+.+.|.
T Consensus 93 ~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~ 170 (966)
T KOG4626|consen 93 FQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAV 170 (966)
T ss_pred hcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccH
Confidence 35556666666555555554 6777777888999999999999999998754 456789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005130 113 QVLRLVQEAGLKADCKLY-TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 113 ~l~~~m~~~g~~pd~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
+.|...++. .|+.+.. +.+...+...|++.+|..-|.+.++... --...|+.|...+-..|+...|+.-|++..+.
T Consensus 171 ~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 171 QCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 999998875 5665543 3445555567999999999988887631 23567999999999999999999999999876
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 005130 192 NVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (713)
Q Consensus 192 g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 269 (713)
.|+ ...|-.|-..|...+.+++|...|.+.... .|+ .+++..+...|-..|.++.|...|++..+.. +.-+
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~ 320 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFP 320 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCch
Confidence 444 567888999999999999999999987643 555 5678888888999999999999999998865 3447
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005130 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
..|+.|..++-..|+..+|.+.|.+.+..... -....+.|..+|...|.++.|..+|....+.. +--....|.|...|
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIY 398 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHH
Confidence 89999999999999999999999998886443 45678889999999999999999999888753 22356789999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 005130 350 SNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 427 (713)
-+.|++++|..-|++..+. .|+ ...|+.|-..|-..|+.+.|++.+.+.+. +.|. ...++.|.+.+-.+|++.+
T Consensus 399 kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHH
Confidence 9999999999999998864 676 46899999999999999999999999887 5675 4678899999999999999
Q ss_pred HHHHHHHHHHCCCCCCH
Q 005130 428 GLMLLSQAKEDGVIPNL 444 (713)
Q Consensus 428 a~~~~~~m~~~g~~p~~ 444 (713)
|++-++...+ ++||.
T Consensus 475 AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHHHc--cCCCC
Confidence 9999999988 45664
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.7e-14 Score=141.57 Aligned_cols=416 Identities=16% Similarity=0.190 Sum_probs=288.0
Q ss_pred CCCCCCCCCCCCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-HH------------------
Q 005130 12 PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CK------------------ 72 (713)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~-~~------------------ 72 (713)
|....+....|..+. +-...-.++.+|.+.++.-+|+.|...|+ |-...+...++++ |.
T Consensus 103 ~~F~P~~l~~~~~V~-~E~nL~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~ 180 (625)
T KOG4422|consen 103 PVFRPRHLADPLQVE-TENNLLKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMR 180 (625)
T ss_pred cccCchhcCCchhhc-chhHHHHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcc
Confidence 333333334343333 33344466789999999999999999885 3322222223222 11
Q ss_pred ----------hhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005130 73 ----------SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142 (713)
Q Consensus 73 ----------~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 142 (713)
+.|++ |- ++-+..+.+..+|..+|.+.++-...+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 181 ~~~E~S~~sWK~G~v--Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 181 NFGEDSTSSWKSGAV--AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred ccccccccccccccH--HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 11222 22 4444555677899999999999999999999999998888899999999999875543
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 005130 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AF 217 (713)
Q Consensus 143 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-A~ 217 (713)
...++..+|....+.||..|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 337899999999999999999999999999998765 46778899999999999999999999999887643 44
Q ss_pred HHHHHhhhC--CCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCC
Q 005130 218 DVLAEMNAE--VHPVD----PDHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQTGD 284 (713)
Q Consensus 218 ~~~~~m~~~--~~~~~----pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~ 284 (713)
.++.++... +..++ .|..-|.+.++.|.+..+.+.|.++...+.... +.|+ ..-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 555554332 11222 246677888999999999999999887665431 2222 2346778888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH--------
Q 005130 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NW-------- 355 (713)
Q Consensus 285 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~-------- 355 (713)
.+.....|+.|.-.-+-|+..+...++++..-.+.++-..+++..++..|...+....--++..+++.. ..
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 999999999999988889999999999999999999999999999988875555544444444444433 10
Q ss_pred H-----HHHHHHH-------HHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHH
Q 005130 356 Q-----KALELYE-------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG----LCPNTITYSILLVAC 419 (713)
Q Consensus 356 ~-----~A~~l~~-------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~ 419 (713)
. -|..+++ +|.+. .-.....+...-.+.+.|+.++|.++|.-..+.+ ..|......-++.+.
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 0 0111111 12212 2234445555666667777777777776664433 223333333455555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005130 420 ERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 420 ~~~g~~~~a~~~~~~m~~~ 438 (713)
........|..+++.|...
T Consensus 572 ~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HhcCCHHHHHHHHHHHHHc
Confidence 5666666666666666543
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=2.5e-13 Score=153.42 Aligned_cols=424 Identities=13% Similarity=0.121 Sum_probs=302.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHH-HHHHH--HHHHHhCCChHHH
Q 005130 36 IRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS-TFNML--MSVCASSKDSEGA 111 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~~~A 111 (713)
.+.|+++.|++.|++..+.. |.+. .++ -++.++...|+.++|+.++++...|+.. .+..+ ...+...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 38999999999999999887 5542 333 5566667779999999999987765433 33333 5578888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005130 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 112 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
+++++.+.+.. +.+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 99999999875 445677778899999999999999999999876 566666655555554566776799999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHH------HHHHHHH-----HHcCCH---HHHHHHH
Q 005130 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC-----ANAGQV---DRAREVY 257 (713)
Q Consensus 192 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~------~~ll~~~-----~~~g~~---~~A~~~~ 257 (713)
. +-+...+..+..+..+.|-...|.++..+-.. -+.+....+ ..++..- ....++ +.|+.-+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 4 44677778889999999999999988765331 111211111 1111100 012233 4455555
Q ss_pred HHHHhc--CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 258 KMIHKY--NIKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (713)
Q Consensus 258 ~~m~~~--~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 331 (713)
+.+... ..++....| --.+-++...|++.++++.|+.|...+...-..+-..+.++|...+..++|..++..+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 555542 112222222 34566788899999999999999998865444578889999999999999999999987
Q ss_pred HCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCHH-HHHHHHHHHHhCCChhH
Q 005130 332 NQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------------LKPTVS-TMNALITALCDGDQLPK 392 (713)
Q Consensus 332 ~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-------------~~p~~~-~~~~li~~~~~~g~~~~ 392 (713)
... ..++......|..+|...+++++|..+++.+.+.. ..||-. .+..++..+...|+..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 653 23355556889999999999999999999998731 122322 34456777889999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHH--HhhHHHHHHHHHHh
Q 005130 393 TMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGMC--SRRYEKARTLNEHV 468 (713)
Q Consensus 393 A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~--~r~~~~a~~l~~a~ 468 (713)
|.+.++++... .| |......+.+.+...|.+.+|++.++..... .|+... ........ ...+.+|..+.+.+
T Consensus 435 Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 435 AQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999774 45 7788888889999999999999999776653 555322 22222221 23567777766665
Q ss_pred hhccC
Q 005130 469 LSFNS 473 (713)
Q Consensus 469 ~~~~~ 473 (713)
....+
T Consensus 511 ~~~~P 515 (822)
T PRK14574 511 ISRSP 515 (822)
T ss_pred HhhCC
Confidence 55444
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=1.3e-13 Score=158.69 Aligned_cols=364 Identities=13% Similarity=0.091 Sum_probs=272.6
Q ss_pred HHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 005130 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (713)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 143 (713)
...+..-.|+.++|++++.... +.+...+..+...+...|++++|..+++...+.. +.+...+..+..++...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 4455667788999999988643 3556679999999999999999999999988763 44567788889999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005130 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (713)
++|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++..
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999998873 33555 8889999999999999999999999874 335666677888888899999999999866
Q ss_pred hhCCCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHHhcC
Q 005130 224 NAEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCSQTG 283 (713)
Q Consensus 224 ~~~~~~~~pd~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~-~~~----~~li~~~~~~g 283 (713)
.. .|+. .....++..+. ..+++ ++|...++.+.+. ...|+. ..+ ...+..+...|
T Consensus 177 ~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 177 NL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred CC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 43 3331 11222222222 22334 7788888888754 112221 111 11134556779
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 005130 284 DWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKAL 359 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~ 359 (713)
++++|+..|+.+.+.+.. |+.. ...+..+|...|++++|...|+.+.+..... .......|..++.+.|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987642 4432 2235778999999999999999987654211 1345667777889999999999
Q ss_pred HHHHHHHhCC-----------CCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 005130 360 ELYEHMKSIK-----------LKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDD 424 (713)
Q Consensus 360 ~l~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 424 (713)
.+++.+.+.. -.|+ ...+..+...+...|+.++|+++++++... .| +...+..+...+...|+
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 9999998642 0123 234566778889999999999999999875 45 66778888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 005130 425 VEVGLMLLSQAKEDGVIPNL 444 (713)
Q Consensus 425 ~~~a~~~~~~m~~~g~~p~~ 444 (713)
+++|++.+++..+. .|+.
T Consensus 409 ~~~A~~~l~~al~l--~Pd~ 426 (765)
T PRK10049 409 PRAAENELKKAEVL--EPRN 426 (765)
T ss_pred HHHHHHHHHHHHhh--CCCC
Confidence 99999999998874 4553
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=4.1e-12 Score=146.60 Aligned_cols=503 Identities=12% Similarity=0.005 Sum_probs=258.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHhCCChHHHHHH
Q 005130 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQV 114 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 114 (713)
..|++++|++.|+...+.. |.+...+..+.+++...|+.++|+..+++.. .|+...|..++..+ +++.+|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 4599999999999998877 7777788888888888899999998888754 33333333333222 777788888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH--------HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHH
Q 005130 115 LRLVQEAGLKADCKLYTTLITT--------CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-IDGCAKAGQVAKAFGAY 185 (713)
Q Consensus 115 ~~~m~~~g~~pd~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~l~ 185 (713)
++++.+.. +-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.+++++|++++
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 88887653 2233344434333 4333 33333333 2222222333333333 55666666666666666
Q ss_pred HHHHhCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHH
Q 005130 186 GIMRSKNV------------------------------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235 (713)
Q Consensus 186 ~~m~~~g~------------------------------~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~ 235 (713)
.++.+.+. +-|...+..+...|.+.|+.++|.+++.++.... .-.|+..
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~-~~~~~~~ 284 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF-TTDAQEK 284 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc-cCCCccH
Confidence 66555531 1234444445555555555555555555543211 0011111
Q ss_pred HH------------------------------HHHHHHHHHcCCHHHHHHHHHHHHh--------cCC------------
Q 005130 236 TI------------------------------GALMKACANAGQVDRAREVYKMIHK--------YNI------------ 265 (713)
Q Consensus 236 ~~------------------------------~~ll~~~~~~g~~~~A~~~~~~m~~--------~~~------------ 265 (713)
++ -.++..+.+.++++.+.++...-.. ...
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 11 1112233333333333332210000 000
Q ss_pred --------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC---HHHHHHH------
Q 005130 266 --------KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGK---VEAAFEI------ 326 (713)
Q Consensus 266 --------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~g~---~~~a~~~------ 326 (713)
+.+....-.+.-...+.|+.++|..+|+..... ...++.....-++..|.+.+. ..++..+
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 001111222222345678888999888887652 122344444466666666554 2222222
Q ss_pred ----------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005130 327 ----------------LQEAKNQ-GI-SV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 327 ----------------~~~m~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
....... +. ++ +...|..+..++.. ++.++|...|.+.... .|+......+...+..
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQ 521 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHH
Confidence 1111111 11 23 56667777766666 6777777766666544 4554433333444457
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--hhHHHHHH
Q 005130 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEKART 463 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~--r~~~~a~~ 463 (713)
.|++++|+..|+++... .|+...+..+..++.+.|+.++|...+++..+.. |+.. .+..+...+. .++++|..
T Consensus 522 ~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 522 VEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred CCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 78888888888776543 4554555566667777788888888887777643 3332 2222222220 23555554
Q ss_pred HHHHhhhccCCCCccccccH------------HHHHHHHHHHHHcCCCccHHHHHHHHhhcC--CCCchhHHHHHHHHcC
Q 005130 464 LNEHVLSFNSGRPQIENKWT------------SLALMVYREAIVAGTIPTVEVVSKVLGCLQ--LPYNADIRERLVENLG 529 (713)
Q Consensus 464 l~~a~~~~~~~~~~~~~~~~------------~~A~~~~~~m~~~g~~P~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~ 529 (713)
..+.....++. ...|. ..|+..|++.+. ..|+...+...++.+. .+...+....+.+.+.
T Consensus 598 ~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 598 DLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44332222221 11222 246677777665 4677766555555322 2222222233333443
Q ss_pred CCcc-cccccccccchhcccccchHHHHHHHHHHhC
Q 005130 530 VSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASF 564 (713)
Q Consensus 530 ~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~ 564 (713)
+.|+ +..+.++..++...|+.++ |...++.+.+.
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~e-A~~~l~~Al~l 706 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAA-TQHYARLVIDD 706 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHhc
Confidence 4443 2333334455566676443 66777777644
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=1.5e-11 Score=142.08 Aligned_cols=452 Identities=9% Similarity=0.017 Sum_probs=227.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH--------HHhhHHHHHHHHHhhhCC-CCCHHHHHHH-HHHHHhCCC
Q 005130 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNV--------CKSQKAIKEAFRFFKLVP-NPTLSTFNML-MSVCASSKD 107 (713)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~-~~~~~~~~~l-i~~~~~~g~ 107 (713)
-+++++|..+++++.+.. |.+..+...+... +.+.+...+|+. .+... .|+....... ...|.+.++
T Consensus 121 i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 121 IPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred hccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 345555555555555443 3333333333333 333344444444 22221 2234433333 677788888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005130 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 186 (713)
+++|+.++..+.+.+ +.+..-...|..+|.. .++ +.+..++... +.-|...+..+...|.+.|+.++|..+++
T Consensus 198 w~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 198 WSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888876 3345556666667776 355 7777775532 23578888899999999999999999999
Q ss_pred HHHhCCCC-CCHHHHHHH------------------------------HHHHHhcCCHHHHHHHHH--------------
Q 005130 187 IMRSKNVK-PDRVVFNAL------------------------------ITACGQSGAVDRAFDVLA-------------- 221 (713)
Q Consensus 187 ~m~~~g~~-pd~~~~~~l------------------------------i~~~~~~g~~~~A~~~~~-------------- 221 (713)
++...-.. |...+|-.+ +..+.+.++++.+.++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAV 351 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhh
Confidence 87643211 222222211 233344444444443321
Q ss_pred ---------------HhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCC
Q 005130 222 ---------------EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTPEVYTIAINCCSQTGD 284 (713)
Q Consensus 222 ---------------~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~ 284 (713)
.|... .+-+.....-+--...+.|+.++|.++|+..... +...+....+-++..|...+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~---~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQ---EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred ccccCchhHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 11100 0011122222222345567777777777666542 122234444455566655544
Q ss_pred ---HHHHHHH----------------------HHHHHH-CCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005130 285 ---WEFACSV----------------------YDDMTK-KGV-IP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (713)
Q Consensus 285 ---~~~A~~l----------------------~~~m~~-~g~-~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 335 (713)
..++..+ ...... .+. .+ +...|..+..++.. ++.++|...+.......
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~- 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ- 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence 2233222 111111 011 12 34445555544444 56666666555555432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHH
Q 005130 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSI 414 (713)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ 414 (713)
|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|.+.|++..+.. |+ ...+..
T Consensus 507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~ 581 (987)
T PRK09782 507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWW 581 (987)
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHH
Confidence 33333333333445666666666666665433 3444445555556666666666666666666532 32 222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHHHHHhhhccCCCCcc---------ccccH
Q 005130 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI---------ENKWT 483 (713)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~---------~~~~~ 483 (713)
+...+...|++++|...+++..+ +.|+...+..+..++.+ ++++|....+.....++..+.. ..+..
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 33344455666666666666665 23454455444444433 3444444333322222221110 01122
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHhhc
Q 005130 484 SLALMVYREAIVAGTIPTVEVVSKVLGCL 512 (713)
Q Consensus 484 ~~A~~~~~~m~~~g~~P~~~~~~~~l~~~ 512 (713)
..|+..|++.++ ..|+.......++.+
T Consensus 660 eeAi~~l~~AL~--l~P~~~~a~~nLA~a 686 (987)
T PRK09782 660 AQSREMLERAHK--GLPDDPALIRQLAYV 686 (987)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 357777777766 467766544444433
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=2.7e-11 Score=137.14 Aligned_cols=398 Identities=10% Similarity=0.048 Sum_probs=282.0
Q ss_pred HHHHHhhHHHHHHHHHhhhCC--CCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005130 68 FNVCKSQKAIKEAFRFFKLVP--NPTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (713)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 144 (713)
+-...+.|+++.|+..|++.. .|+. .....++..+...|+.++|+..+++..... .........+...|...|+++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334567789999999998765 3442 122388888889999999999999988211 223344444466888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005130 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (713)
+|+++|+++.+.... |...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999988533 5677778889999999999999999999876 5666666555555545666767999999998
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH------HHHHHHH-----HhcCC---HHHHHH
Q 005130 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------TIAINCC-----SQTGD---WEFACS 290 (713)
Q Consensus 225 ~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------~~li~~~-----~~~g~---~~~A~~ 290 (713)
.. .+.+...+..+..+..+.|-...|.++...-+..- .+....+ ..+|..- ....+ .+.|+.
T Consensus 197 ~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 197 RL---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred Hh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 64 13346677888889999999999988776544221 1111000 1111100 01122 345566
Q ss_pred HHHHHHHC-CCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005130 291 VYDDMTKK-GVIPDEV-----FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (713)
Q Consensus 291 l~~~m~~~-g~~p~~~-----t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 364 (713)
-++.+... +..|... ...-.+-++...|+..++++.|+.+...+.+....+--++.++|...+.+++|..+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 66665542 2224321 12234557788999999999999999998776778999999999999999999999999
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-------------CCCCHHH-HHHHHHHHHhcCCH
Q 005130 365 MKSIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-------------LCPNTIT-YSILLVACERKDDV 425 (713)
Q Consensus 365 m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~ 425 (713)
+.... ..++......|..+|...+++++|..+++++.+.- ..||-.. +..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 86542 13345556789999999999999999999998731 1233333 34456778899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHHHHHhhhccCC
Q 005130 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG 474 (713)
Q Consensus 426 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~ 474 (713)
.+|.+.++.+.... +-|......+-+++.. ...+|..+.++....++.
T Consensus 433 ~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 433 PTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 99999999998752 3355556666666553 678888887776666543
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=2.6e-11 Score=119.57 Aligned_cols=313 Identities=21% Similarity=0.273 Sum_probs=237.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCChhHH-HHHHHHHHHCC----------
Q 005130 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA--KSGKVDAM-FEVFHEMVNAG---------- 157 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~--~~g~~~~A-~~~~~~m~~~g---------- 157 (713)
.+.+=|.|+.. ..+|....+.-+++.|...|++....+-..|+..-+ ...++--| .+.|-.|.+.|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34566666664 456889999999999999998877776665554332 22222211 12333332221
Q ss_pred ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 005130 158 ---------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (713)
Q Consensus 158 ---------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (713)
.+.+..+|.+||.+.|+.-..+.|.++|++-.....+.+..+||.+|.+-.-.. ..+++.+|...
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-- 267 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ-- 267 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh--
Confidence 144678999999999999999999999999998888999999999997765432 37788899876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CC
Q 005130 229 PVDPDHITIGALMKACANAGQVDRA----REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KG 299 (713)
Q Consensus 229 ~~~pd~~~~~~ll~~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g 299 (713)
.+.||..|+|+++++.++.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 7899999999999999999988765 5677899999999999999999999999888754 4444444432 22
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005130 300 VIP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI 368 (713)
Q Consensus 300 ~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 368 (713)
++| |...|...+..|.+..+.+.|.+++.-+.... +.|+ .+-|..+....|.....+.-...|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 322 55678889999999999999999988765431 2233 245677888889999999999999999877
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH
Q 005130 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (713)
Q Consensus 369 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 410 (713)
-+-|+..+...++.+....|.++-.-+++.+|+..|..-+..
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 667888888899999999999988888888888776433333
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=2.8e-11 Score=131.09 Aligned_cols=428 Identities=13% Similarity=0.083 Sum_probs=283.9
Q ss_pred CCCCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCH--HH
Q 005130 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL--ST 94 (713)
Q Consensus 20 ~~~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~--~~ 94 (713)
.+++++..-.++-|.+.-.|++..++++.+.+...... +.-..-+..+++.+-..|++++|..+|-+.. .+|. ..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 45677788888889999999999999999999876521 1111224445677778899999999987643 3333 34
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005130 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
+--+...+...|+++.+...|+.+.+.. +.+..|...|...|+..+ ..+.|..+..+..+.- +.|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 4556788999999999999999998863 445667777777777764 4567777777766553 346778877777
Q ss_pred HHHHcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCCCH------HHHHH
Q 005130 171 GCAKAGQVAKAFGAYGIM----RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDH------ITIGA 239 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m----~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~pd~------~~~~~ 239 (713)
.|-...-+ .++.+|... ...+-.+.....|.+...+...|+++.|...|........ ...+|. .+--.
T Consensus 423 l~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 77654443 447766654 3455567788999999999999999999999988765310 122333 12223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005130 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 319 (713)
+...+-..++.+.|.+.|..+.+.. +.-+..|--+...--..+...+|...+.+.....-. |...++.+...+.+...
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhh
Confidence 4455566678888888888887754 222333444433333345667777777776654321 33444445555666666
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005130 320 VEAAFEILQEAKNQG-ISVGIISYSSLMGACSN------------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 320 ~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
+..|.+-|..+.+.- ..+|..+.-+|.+.|.. .+..++|.++|.+..+.. +.|...-|-+...++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 666666555554442 22566666666665542 234667777777776553 4566667777777788
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 005130 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~ 454 (713)
.|++.+|..+|.+.++... -+..+|..+..+|...|++-.|++.|+...+. .-.-+..+.++|-.++
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 8888888888888777532 23445667777788888888888888776653 4444555555555543
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.58 E-value=7.1e-11 Score=127.99 Aligned_cols=404 Identities=13% Similarity=0.102 Sum_probs=302.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCC----Ch
Q 005130 37 RQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK----DS 108 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g----~~ 108 (713)
..|+++.|...|.+....+ +.+ ..-+.-+++.....|+++.|...|+.+. +.+..+.-.|...|+..+ ..
T Consensus 319 a~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred hhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH
Confidence 6899999999999988766 555 4445567788889999999999999764 345566667777777665 45
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005130 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM----VNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 184 (713)
+.|..++....+.- +.|...|-.+...+-.. +...++.+|... ...+-.+-....|.+...+...|++++|...
T Consensus 397 d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 67777777766653 55777888888777654 444447666554 4455567888999999999999999999999
Q ss_pred HHHHHhC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 005130 185 YGIMRSK---NVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAR 254 (713)
Q Consensus 185 ~~~m~~~---g~~pd~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~ 254 (713)
|...... -..+|. .+--.+...+-..++.+.|.+.|..+... .|. +..|--++.+....+...+|.
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke----hp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE----HPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----CchhHHHHHHhhHHHHhccCcHHHH
Confidence 9988765 122333 12223455566678999999999999875 344 233444443444457788999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHH
Q 005130 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVE 321 (713)
Q Consensus 255 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~------------~g~~~ 321 (713)
..++.....+ ..++.+++.+...|.+...+..|.+-|....+. ...+|..+.-+|...|.+ .+..+
T Consensus 551 ~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~ 629 (1018)
T KOG2002|consen 551 LLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQE 629 (1018)
T ss_pred HHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHH
Confidence 9999888876 667889999999999999999999977776553 233677777777776553 24577
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005130 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 322 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
.|+++|.++.+.. +.|...-|-+.-.++.+|++.+|..+|.+..+... .+..+|-.+..+|...|++..|+++|+.-.
T Consensus 630 KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 630 KALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998875 56888889999999999999999999999987642 345678899999999999999999998854
Q ss_pred -HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005130 402 -SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (713)
Q Consensus 402 -~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 451 (713)
...-.-+......|..++...|.+.++.+..-........-....+|..+
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 44444467778888899999999999999988777653333334444443
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=7.4e-12 Score=123.88 Aligned_cols=409 Identities=13% Similarity=0.195 Sum_probs=273.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC----CCCC----HHHHHHHHHHHHhCCCh
Q 005130 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPT----LSTFNMLMSVCASSKDS 108 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~----~~~~~~li~~~~~~g~~ 108 (713)
-+.-..+|+..++-+.+...+|+.-.+...+..++.+.+.+..|+++|+.. |.-+ +...|.+.-.+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 456678888888888887777766666566677777888999999998753 3222 23455555668889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC------------CHHHHHHH-----HHH
Q 005130 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP------------NVHTYGAL-----IDG 171 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------------~~~~~~~l-----i~~ 171 (713)
+.|+..|+...+. .|+..+--.|+-++..-|+-++..+.|.+|+.....| +....|-- +.-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999988775 6787776667777777899999999999998653333 33222222 222
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCCHHH---H----------H--------HHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 005130 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV---F----------N--------ALITACGQSGAVDRAFDVLAEMNAEVH 228 (713)
Q Consensus 172 ~~~~g--~~~~A~~l~~~m~~~g~~pd~~~---~----------~--------~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (713)
.-+.+ +.++++-.-.++..--+.||-.. | . .-..-+.+.|+++.|.+++.-+.....
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22221 22233222222222222222110 0 0 112357788888888888776654321
Q ss_pred CCCCCHHHHHHHH------------------------------------HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 005130 229 PVDPDHITIGALM------------------------------------KACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (713)
Q Consensus 229 ~~~pd~~~~~~ll------------------------------------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 272 (713)
... ...-+.|. +.....|++++|.+.|++....+.......|
T Consensus 451 k~~--saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 451 KTA--SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred hhh--HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 111 01111110 0112347888888888888776533222333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005130 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (713)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 352 (713)
|. .-.+-..|+.++|++.|-++...= .-+...+.-+...|....+..+|++++.+.... ++.|+.+.+-|.+.|-+.
T Consensus 529 ni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 NI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred Hh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 33 334567889999999988765432 226667777888888889999999988776554 567889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHH
Q 005130 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-ERKDDVEVGLML 431 (713)
Q Consensus 353 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~ 431 (713)
|+-..|.+.+-+-.+. ++-|..+..-|..-|....-+++|+..|++.-- ++|+..-|..++..| .+.|++..|.++
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999998876554322 245677777777888888889999999998755 689999999888655 568999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh
Q 005130 432 LSQAKEDGVIPNLVMFKCIIGMCSR 456 (713)
Q Consensus 432 ~~~m~~~g~~p~~~~~~~li~~~~r 456 (713)
++...+. +.-|......|+..|+.
T Consensus 683 yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhcc
Confidence 9887653 66777778888887764
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.49 E-value=4.8e-10 Score=120.93 Aligned_cols=368 Identities=13% Similarity=0.139 Sum_probs=274.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHhCC
Q 005130 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASSK 106 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g 106 (713)
.-.|.|.-.|++++|..++.+.+++. |.+..-+..++.++.+.|+.++++..+-. ..+.|...|-.+-....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 34455666799999999999999988 77888888899999999999999987653 34667789999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHHHH
Q 005130 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG----ALIDGCAKAGQVAKAF 182 (713)
Q Consensus 107 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~~A~ 182 (713)
+++.|.-.|.+.++.. +++-..+-.-...|-+.|+...|.+-|.++.....+.|..-.. .++..|...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999886 5555555566778899999999999999999875322322222 3455666777779999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------------------------CCCCCCCHHH
Q 005130 183 GAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPDHIT 236 (713)
Q Consensus 183 ~l~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------------~~~~~pd~~~ 236 (713)
+.++..... +-..+...++.++..+.+...++.|......+... +.++.++..+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 999888763 22344567888888899999999998887776551 0112223333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005130 237 IGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 314 (713)
+ -++-++.+....+....+.....+.++ ..+...|.-+..+|...|++.+|+++|..+......-+...|-.+..+|
T Consensus 381 ~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 I-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred H-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1 122234445555555555566666663 3456778999999999999999999999999876666788899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHh
Q 005130 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITALCD 386 (713)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~~~~p~~~~~~~li~~~~~ 386 (713)
...|..++|.+.|..+.... +.+..+--+|-..|-+.|+.++|.+.+..+.. .+..|+...--.....|.+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 99999999999999988764 44556677788889999999999999998652 2233444444445567778
Q ss_pred CCChhHHHHHHHHHHH
Q 005130 387 GDQLPKTMEVLSDMKS 402 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~ 402 (713)
.|+.++=+.+-.+|..
T Consensus 539 ~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 539 VGKREEFINTASTLVD 554 (895)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8888876666665543
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=1.8e-10 Score=122.39 Aligned_cols=283 Identities=13% Similarity=0.049 Sum_probs=136.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHH
Q 005130 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 182 (713)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 46666666555554433111 1222222233335566666666666666554 33332221 2244566666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH------HHHHHHHHHHHHcCCHHHHHHH
Q 005130 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (713)
Q Consensus 183 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~------~~~~~ll~~~~~~g~~~~A~~~ 256 (713)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666553 3345555566666666666666666666665431 111111 1122222222233333444444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005130 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (713)
Q Consensus 257 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 336 (713)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 4444332 1334455555555555555555555555555543 222211 11112223355555555555554442 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005130 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (713)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (713)
-|...+.++...|.+.|++++|.+.|+...+. .|+...+..|...+.+.|+.++|.+++++-
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444555555555555555555555555543 355555555555555555555555555543
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.47 E-value=3.3e-13 Score=136.90 Aligned_cols=216 Identities=18% Similarity=0.174 Sum_probs=50.8
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005130 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (713)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 218 (713)
..++.+.|.+.++++...+.. +...+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++.+
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 131 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEE 131 (280)
T ss_dssp ------------------------------------------------------------------H-HHHTT-HHHHHH
T ss_pred ccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHH
Confidence 334444444444444433211 22333333333 3444444444444333322 1233333334444444444444444
Q ss_pred HHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 219 ~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
+++..... ...+++...|..+...+.+.|+.++|.+.++...+.. +.+....+.++..+...|+.+++.+++....+.
T Consensus 132 ~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 132 LLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 44443321 1122333334444444444444444444444444332 223333444444444444444444443333332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005130 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (713)
Q Consensus 299 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 362 (713)
. ..|...+..+..+|...|+.++|...+....+.. +.|+.+...+.+++...|+.++|.++.
T Consensus 210 ~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 210 A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp --HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT------------
T ss_pred C-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 1 1122233333444444444444444444433322 223333344444444444444444433
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=5e-13 Score=135.61 Aligned_cols=257 Identities=18% Similarity=0.153 Sum_probs=86.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhCCCh
Q 005130 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDS 108 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 108 (713)
-+.+.+.|++++|+++++........|.+..+...+..++...++.+.|++.++.+.. .+...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4455677888888888855443322255556666666666777777777777776542 234455555555 566777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005130 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 187 (713)
++|.+++....+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.|++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777665544 2445556666677777777777777777765432 234566667777777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005130 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (713)
Q Consensus 188 m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 267 (713)
..+.. +-|....+.++..+...|+.+++.+++...... .+.|...+..+..+|...|+.++|...|+...+.. +.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 76652 224566666777777777777766666665543 13344456666677777777777777777766644 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 268 TPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
|+.+...+..++.+.|+.++|..+..+..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 66666677777777777777776666543
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=3.8e-10 Score=120.69 Aligned_cols=291 Identities=10% Similarity=-0.049 Sum_probs=176.8
Q ss_pred hhHHHHHHHHHhhhCC--CCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005130 73 SQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (713)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 149 (713)
..|+++.|.+.+.... .|+ ...+-....+..+.|+++.|.+.+....+....++..........+...|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 4566777777665543 233 2333334455666778888888887776543222222334446667777888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHhhh
Q 005130 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITAC---GQSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~ 225 (713)
++.+.+.. +-+..++..+...|.+.|++++|.+++..+.+.++.+ ...+. .-..++ ...+..+.+.+.+..+..
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88877765 2356677777778888888888888888887776432 22221 111111 222222323334443333
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005130 226 EVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (713)
Q Consensus 226 ~~~-~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 303 (713)
... ..+.+...+..+...+...|+.+.|.++++...+......... ...........++.+.+.+.++...+.... |
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~ 332 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-K 332 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-C
Confidence 200 1123666777777788888888888888887777542221111 112222233456777788888777665332 3
Q ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 304 E--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 304 ~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 45667777888888888888888854444446777778888888888888888888888753
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=4e-10 Score=119.79 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=218.2
Q ss_pred hHHHHHHHHHhhhCCCC--CHHH-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCChhHHHH
Q 005130 74 QKAIKEAFRFFKLVPNP--TLST-FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT--TLITTCAKSGKVDAMFE 148 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~--~li~~~~~~g~~~~A~~ 148 (713)
.|+++.|.+.+...+.. ++.. |-....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 48889999888876532 2333 333344558899999999999999875 55544333 44678889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLA 221 (713)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~li~~~~~~g~~~~A~~~~~ 221 (713)
.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999886 347888999999999999999999999999988654332 233444444445556667777777
Q ss_pred HhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005130 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (713)
Q Consensus 222 ~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 301 (713)
.+... .+.+......+...+...|+.++|.++++...+. ++++.. .++.+....++.+++++..+...+....
T Consensus 254 ~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 254 NQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred hCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 66542 3456778888999999999999999999988874 444422 2344445669999999999999987654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005130 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 302 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
|...+.++...|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677889999999999999999999999886 58899999999999999999999999987653
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.44 E-value=2.8e-09 Score=115.17 Aligned_cols=361 Identities=14% Similarity=0.091 Sum_probs=267.8
Q ss_pred HHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 005130 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (713)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 147 (713)
....|+.++|.+++.++. +.+...|.+|...|-+.|+.+++...+-..-... +.|...|..+.....+.|.++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 344599999999998764 5677899999999999999999988775554443 556788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHh
Q 005130 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA----LITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~----li~~~~~~g~~~~A~~~~~~m 223 (713)
-.|.+.++.. +++...+---+..|-+.|+...|..-|.++.....+.|..-+.. +++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999875 33544444557789999999999999999987743223233333 445566677779999988887
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------------------CHHHHHHHH
Q 005130 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---------------------------TPEVYTIAI 276 (713)
Q Consensus 224 ~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~---------------------------~~~~~~~li 276 (713)
... .+-..+...++.++..|.+...++.|......+..+...+ +..+. -++
T Consensus 307 ~s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ 384 (895)
T KOG2076|consen 307 LSK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLM 384 (895)
T ss_pred Hhh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHh
Confidence 663 2334556678888999999999999988887776622222 22221 222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005130 277 NCCSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (713)
Q Consensus 277 ~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 354 (713)
-++......+....+...+.... +.-+...|.-+..+|...|++..|+.+|..+......-+..+|--+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 33444444455555555555555 3335667888999999999999999999999988666678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCCHH
Q 005130 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--------LGLCPNTITYSILLVACERKDDVE 426 (713)
Q Consensus 355 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~g~~p~~~t~~~ll~a~~~~g~~~ 426 (713)
.++|.+.|+...... +-+...--.|-..|-+.|+.++|++++..|.. .+..|+..........+...|+.+
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999998652 23345556677788899999999999998642 334556655566667788888888
Q ss_pred HHHHHHHHHH
Q 005130 427 VGLMLLSQAK 436 (713)
Q Consensus 427 ~a~~~~~~m~ 436 (713)
+=..+-..|+
T Consensus 544 ~fi~t~~~Lv 553 (895)
T KOG2076|consen 544 EFINTASTLV 553 (895)
T ss_pred HHHHHHHHHH
Confidence 7555555554
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=3.4e-10 Score=112.32 Aligned_cols=376 Identities=15% Similarity=0.168 Sum_probs=248.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHH----HHHHHHHhhHHHHHHHHHhhhCC--CCCHHH-HHHHHHHHHhCCCh
Q 005130 36 IRQGRISECIDLLEDMERKGLLDMDKVYHA----RFFNVCKSQKAIKEAFRFFKLVP--NPTLST-FNMLMSVCASSKDS 108 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~g~~ 108 (713)
.+...+..|+..++-.+.+- .+-+..... .+.-.+.+.|.+++|+.-|+... .||..+ ||.+| .+...|+.
T Consensus 248 ~kkr~fskaikfyrmaldqv-psink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ 325 (840)
T KOG2003|consen 248 FKKREFSKAIKFYRMALDQV-PSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDA 325 (840)
T ss_pred eehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcH
Confidence 36678889999887766542 223333322 23334567899999999998753 577654 55544 44456889
Q ss_pred HHHHHHHHHHHHcCCC------------CCHHHHHHHHH-----HHHHcCC--hhHHHHHHHHHHHCCCCCCHHH-----
Q 005130 109 EGAFQVLRLVQEAGLK------------ADCKLYTTLIT-----TCAKSGK--VDAMFEVFHEMVNAGIEPNVHT----- 164 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~------------pd~~~~~~li~-----~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~----- 164 (713)
++..+.|..|+..-.. |+....+.-|. -.-+.++ -++++-.-.+++.--+.||-..
T Consensus 326 ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc 405 (840)
T KOG2003|consen 326 EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC 405 (840)
T ss_pred HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH
Confidence 9999999999864322 23333332221 1111111 1111111111111111222100
Q ss_pred --------H--------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--H---------------------
Q 005130 165 --------Y--------GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI--T--------------------- 205 (713)
Q Consensus 165 --------~--------~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li--~--------------------- 205 (713)
+ -.-..-|.+.|+++.|++++.-..+..-+.-...-+.|- .
T Consensus 406 le~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 406 LESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 0 011235788999999988888776543111111111110 0
Q ss_pred -------------HHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 005130 206 -------------ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL---MKACANAGQVDRAREVYKMIHKYNIKGTP 269 (713)
Q Consensus 206 -------------~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~l---l~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 269 (713)
....+|++++|.+.|.+.... |.....+| .-.+-..|++++|++.|-++... +..+.
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n------dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~ 558 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNA 558 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhH
Confidence 011357899999999987643 22222222 23577889999999999877543 23456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005130 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
.+...+.+.|-...++..|++++.+.... +..|...++.|...|-+.|+-.+|++.+-.--+. ++.+..+..-|...|
T Consensus 559 evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayy 636 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYY 636 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHH
Confidence 78888899999999999999999877554 3347888999999999999999999988765544 577888999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005130 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (713)
....-+++|+..|++..- ++|+..-|..||..| .+.|++.+|++++++..+. ++-|.....-|+..|...|.-
T Consensus 637 idtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 999999999999998654 389999999998655 5789999999999998765 556778888888888877753
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=7e-10 Score=118.59 Aligned_cols=290 Identities=11% Similarity=-0.005 Sum_probs=162.1
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005130 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (713)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (713)
...|+++.|.+.+....+. .|+ ...+-....++.+.|+.+.|.+.+.+..+....+.....-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3467888888887776654 333 3334444566677788888888887776543222223344456677778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHH
Q 005130 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-ALMKAC---ANAGQVDRAREVY 257 (713)
Q Consensus 182 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~-~ll~~~---~~~g~~~~A~~~~ 257 (713)
...++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+. +.. +...+. .-..++ ...+..+.+.+.+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~--~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA--GLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 88888887764 335566777777888888888888888777654 221 211121 111111 2222222222233
Q ss_pred HHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 005130 258 KMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF--AGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 258 ~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~a~~~~~~m~~ 332 (713)
..+.+.. .+.++..+..+...+...|+.++|.+++++..+.........+. ++.. ....++.+.+.+.++...+
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHH
Confidence 3333221 12356677777777777777777777777776653321111111 1111 1223555556666655554
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005130 333 QGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (713)
Q Consensus 333 ~g~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (713)
.. +-|+ ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 42 2233 4455666666666666666666663222222566666666666666666666666666653
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6.6e-09 Score=104.14 Aligned_cols=163 Identities=15% Similarity=0.026 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005130 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
.|+..+.+.|+-.++.++|...|++.++.+.. ....|+.+..-|....+...|.+-++...+-+ +-|-..|-.|..+|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 44444455555555555555555555544332 33444444455555555555555555554443 33444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005130 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (713)
.-.+...-|.-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......| ..+...+..+...+.+.++.++|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHH
Confidence 55555555555555544432 2344555555555555555555555555554433 223344555555555555555555
Q ss_pred HHHHHHH
Q 005130 430 MLLSQAK 436 (713)
Q Consensus 430 ~~~~~m~ 436 (713)
+.|+..+
T Consensus 487 ~~yek~v 493 (559)
T KOG1155|consen 487 QYYEKYV 493 (559)
T ss_pred HHHHHHH
Confidence 5554443
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.42 E-value=9.5e-08 Score=99.69 Aligned_cols=415 Identities=13% Similarity=0.099 Sum_probs=324.0
Q ss_pred cchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhh---hCCCCCHHHHHHHHHH
Q 005130 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMSV 101 (713)
Q Consensus 25 ~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~li~~ 101 (713)
...++.+|..-+.....++|+-++....+- .|....+...+ .+..-++.|..+++ +..+.+...|.+-...
T Consensus 376 iP~sv~LWKaAVelE~~~darilL~rAvec--cp~s~dLwlAl----arLetYenAkkvLNkaRe~iptd~~IWitaa~L 449 (913)
T KOG0495|consen 376 IPRSVRLWKAAVELEEPEDARILLERAVEC--CPQSMDLWLAL----ARLETYENAKKVLNKAREIIPTDREIWITAAKL 449 (913)
T ss_pred CCchHHHHHHHHhccChHHHHHHHHHHHHh--ccchHHHHHHH----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Confidence 456788999999988889999999998874 35544433333 33344556666654 4556788888888777
Q ss_pred HHhCCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc
Q 005130 102 CASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAKA 175 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~----m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~ 175 (713)
=-.+|+.+....+..+ +...|+..+...|-.=...|-..|.+-.+..+....+..|++- -..||+.-...|.+.
T Consensus 450 EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~ 529 (913)
T KOG0495|consen 450 EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR 529 (913)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc
Confidence 7888999988888764 4567888999999888899999999999999999988888653 245888889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005130 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (713)
Q Consensus 176 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~ 255 (713)
+.++-|..+|....+- ++.+...|......--..|..+....+|++.... ++.....|-....-+-..|++..|..
T Consensus 530 ~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 530 PAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred chHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 9999999999988876 3556778888887777889999999999988764 34455667667777888999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005130 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (713)
Q Consensus 256 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 335 (713)
++....+.. +.+..+|-+-+.....+..++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+. +
T Consensus 606 il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-f 681 (913)
T KOG0495|consen 606 ILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-F 681 (913)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-C
Confidence 999998876 557889999999999999999999999998775 456666666555566678999999999888876 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005130 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (713)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (713)
+.-...|-.+...+-+.++++.|...|..-.+. ++-.+..|-.|...--+.|.+-+|..+|++.+-.+ +-|...|...
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~ 759 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLES 759 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHH
Confidence 334567888889999999999999988765443 33445678888888888899999999999887653 3377889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005130 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (713)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 456 (713)
|..-.+.|+.+.|..+..+.++. +..+-..|..-|-+-.+
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 99999999999999888877654 33444556555555443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.1e-08 Score=102.57 Aligned_cols=289 Identities=10% Similarity=0.043 Sum_probs=176.1
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCH
Q 005130 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--PDRVVFNALITACGQSGAV 213 (713)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~li~~~~~~g~~ 213 (713)
++-.....+++..=.+.....|++-+...-+....+.-...+++.|+.+|+++.+...- -|..+|+.++-.--....+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 34444455556555556666665544444444444444556667777777766655210 1455565555222111111
Q ss_pred -HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005130 214 -DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (713)
Q Consensus 214 -~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (713)
--|..++. + ....|. |...+.+-|+-.++.++|...|+...+.+ +.....|+.|.+-|....+...|..-+
T Consensus 316 s~LA~~v~~-i----dKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 316 SYLAQNVSN-I----DKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHH-h----ccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 11222221 1 122332 55556666777777788888888777766 455677888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005130 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (713)
Q Consensus 293 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 372 (713)
+...+.... |-..|-.|.++|.-.+...-|+-.|++..... +.|...|.+|.++|.+.+++++|++-|......| ..
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 877776554 77777888888888888777887777776653 4567788888888888888888888887777654 33
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHH----CCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 005130 373 TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTITYS--ILLVACERKDDVEVGLMLLSQA 435 (713)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m 435 (713)
+...+..|...|-+.++.++|.+.|.+-.+ .|..-+..... -|..-+.+.+++++|..+....
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 556777778888888888888777766443 23222211111 1234445566666665544333
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=4.6e-08 Score=98.31 Aligned_cols=400 Identities=12% Similarity=0.089 Sum_probs=237.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHH
Q 005130 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (713)
.++.+..|..+|+..+..+ ..+..+....+..-.+++.+..|..+++... +.-...|--.+-.=-..|+...|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 3556666777777776544 2233333334444456666777777776532 1222344444444455677777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C
Q 005130 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N 192 (713)
Q Consensus 114 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g 192 (713)
+|++-.+. .||...|.+.|+.=.+.+.++.|..+|+..+-. .|++.+|---...=.++|.+..|..+|....+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 77766543 677777777777777777777777777776543 577777777666666777777777777766543 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHH
Q 005130 193 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIH 261 (713)
Q Consensus 193 ~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--~~~~~~ll~~~~~~g~~~~A~~~--------~~~m~ 261 (713)
- .-+...|++....=.++..++.|.-+|.-.... ++.+ ...|..+...--+-|+....... ++.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 0 011222333333333445566666666655542 2222 33344333333334443332222 23333
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH----H-HH---HhcCCHHHHHHHHHHHH
Q 005130 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALI----D-FA---GHAGKVEAAFEILQEAK 331 (713)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li----~-~~---~~~g~~~~a~~~~~~m~ 331 (713)
+.+ +.|-.+|--.+..-...|+.+...++|++.... +.|-. ..|..-| + +| ....+.+.+.++++..+
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333 445566777777777778888888888877654 33321 1111111 1 11 23567777888887777
Q ss_pred HCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 005130 332 NQGISVGIISYSSLMGACS----NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (713)
Q Consensus 332 ~~g~~~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (713)
+. ++-..+|+.-+--+|+ ++.++..|.+++.... |..|-..+|-..|..-.+.+.++....++++.++. .|
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~P 468 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SP 468 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--Ch
Confidence 63 3444556655555554 5677888888877655 44677888888888888888888888888888774 45
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 005130 408 -NTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIG 452 (713)
Q Consensus 408 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~ 452 (713)
|..+|......-...|+.+.|+.+|+..+.. .+......+.+.|+
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 6677777777777788888888888887764 23333444555554
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=4.6e-09 Score=100.66 Aligned_cols=271 Identities=11% Similarity=0.067 Sum_probs=131.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCH
Q 005130 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 178 (713)
+++.++|.++|-+|.+.. +.+..+--+|.+.|.+.|.+|.|+++++.+.+. ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 356777777777777632 223445556777777777777777777777653 332 2333455556666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005130 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (713)
Q Consensus 179 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (713)
|.|..+|..+.+.| .--......|+..|-...+|++|+++-.++... +-.+. +.-|
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~--~~q~~----~~eI----------------- 179 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL--GGQTY----RVEI----------------- 179 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc--CCccc----hhHH-----------------
Confidence 66666666666543 112334455666666666666666665554432 11111 1100
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005130 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (713)
Q Consensus 259 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 338 (713)
...|.-+...+....+.+.|..++.+..+.+.+ .+..--.+.+.....|+++.|.+.++.+.+.+...-
T Consensus 180 ----------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 180 ----------AQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred ----------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 112333333344444444444444444443222 112222233344445555555555555555443333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005130 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (713)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 418 (713)
..+...|..+|...|+.++....+..+.+. .++...-+.|-..-....-.+.|...+.+-... +|+...|..++..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 444555555555555555555555554443 222222223333222233333444433333321 4555555555543
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=4.4e-10 Score=117.70 Aligned_cols=282 Identities=14% Similarity=0.078 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 005130 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAV-DRAFDV 219 (713)
Q Consensus 143 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~~~~~li~~~~~~g~~-~~A~~~ 219 (713)
..+|...|..+...- .-...+..-+..+|...+++++|.++|+.+++.. .--+...|.+.+--+-+.-.+ --|..+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 356666666644431 1123444555666666666666666666665541 112345555555333221111 112222
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005130 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 220 ~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 299 (713)
.+.. +-...+|.++.++|.-.++.+.|.+.|+...+.+ +....+|+.+..-+.....+|.|...|+..+...
T Consensus 414 i~~~-------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 414 IDTD-------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HhhC-------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 2211 1224466666666666677777777776666654 3345666666666666666777777776665543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005130 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (713)
Q Consensus 300 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 379 (713)
.. +-..|..+.-.|.+.++++.|.--|+.+.+-+ +.+.+....+...+-+.|+.++|+++|++..... +.|+..---
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 22 33344455566667777777777776666654 3345556666666667777777777777666443 234444444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.+..+...+++++|++.++++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55566666777777777777766 35543 44555566777777777777766666653
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.32 E-value=8.1e-07 Score=92.94 Aligned_cols=341 Identities=16% Similarity=0.122 Sum_probs=177.8
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHcCC
Q 005130 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE----MVNAGIEPNVHTYGALIDGCAKAGQ 177 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~li~~~~~~g~ 177 (713)
+++...++.|..++....+. ++.+...|.+-...=-..|+.+...++.++ +...|+..+...|-.=...|-..|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 33444455566666555543 344555555555444555555555555544 2334555565556555555555565
Q ss_pred HHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005130 178 VAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (713)
Q Consensus 178 ~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~ 255 (713)
.--+..+....+.-|+.-. ..||+.-...|.+.+.++-|..+|....+. ++.+...|......--..|..+....
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 5555555555554444322 345555555566666666666666555432 23334445444444444555666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005130 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (713)
Q Consensus 256 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 335 (713)
+|++....- +-....|-....-+-..|+...|..++.+..+.... +...|-+-+..-.....++.|..+|.+....
T Consensus 572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 665555432 333445555555555556666666666665554433 4455555555555566666666666555443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHH
Q 005130 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYS 413 (713)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 413 (713)
.++..+|.--+...--.++.++|.+++++..+. .|+- ..|-.+-..+-+.++.+.|.+.|..-.+ ..|+ ...|.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWl 723 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWL 723 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHH
Confidence 244444444444444455566666666555543 3442 3455555555566666666655544333 2333 33444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005130 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
.+...-.+.|.+-.|+.++++..-.+ .-+...|-..|.+=.
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHH
Confidence 44445555556666666665554432 223444555554433
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=1.2e-08 Score=100.98 Aligned_cols=286 Identities=16% Similarity=0.128 Sum_probs=204.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005130 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 184 (713)
.|++..|+.+..+-.+.+- -....|..-..+.-..|+.+.+-.++.+.-+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5889999988888777763 334566667777788889999999988888764466677777888888888998888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHH
Q 005130 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (713)
Q Consensus 185 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-------~~~~~~ll~~~~~~g~~~~A~~~~ 257 (713)
.+++.+.+ +.+.........+|.+.|++.....++..+.+. +.-.| ..+|..+++-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka--~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKA--GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc--cCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88888775 446777788888999999999999998888775 33322 235666666555555555555566
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005130 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (713)
Q Consensus 258 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 337 (713)
+..+.. .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...++ .+.+.++...-.+..+.-.+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC-CC
Confidence 555443 244566777777788888888888888888877776655 22222 3445566655555555544432 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
++-.+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..+|.+.|+..+|.+++++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4467777888888888888888888866554 67888888888888888888888888777553
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=1.6e-08 Score=97.01 Aligned_cols=273 Identities=16% Similarity=0.162 Sum_probs=183.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 005130 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDR 252 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--~~~~~~ll~~~~~~g~~~~ 252 (713)
+++.++|.++|-+|.+.. +.+..+--+|-+.|-+.|..|.|+.+++.+... .+...+ ..+...|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 345556666666665431 112223334555566666666666666655432 111111 2233445566777788888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQ 328 (713)
Q Consensus 253 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~ 328 (713)
|+.+|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888887777644 223456677888888889999999998888887766543 357778888888899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005130 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (713)
Q Consensus 329 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (713)
+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++.+..+.++.+.. ++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 998875 334555566778899999999999999999987433334567889999999999999999999988753 33
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005130 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
...-..+..--....-.+.|..++.+-++ -.|+...+..||+.-.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHL 326 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhh
Confidence 33333333333334445566666554444 3699999999998643
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=7e-12 Score=89.58 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005130 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (713)
Q Consensus 372 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (713)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887764
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=1.3e-09 Score=114.29 Aligned_cols=198 Identities=12% Similarity=0.043 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 005130 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (713)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 275 (713)
+.+|.++...|.-.++.+.|++.|++..+ +.| ..++|+.+..-+.....+|.|...|+.....+ +.+-..|.-+
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGl 495 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGL 495 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhh
Confidence 44444444444444445555554444432 223 34444444444444444444444444443322 1111222233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005130 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (713)
Q Consensus 276 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 355 (713)
.-.|.+.++++.|+-.|++..+.+.. +.+....+...+.+.|+.++|+++++++..... .|+..--.-...+...++.
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcch
Confidence 44444444455554444444444333 344444444444444444555554444444331 1222222223333344444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 356 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
++|...++++++.- +.+...|-.+...|.+.|+.+.|+.-|.-|.+
T Consensus 574 ~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 574 VEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 44554444444331 11233344444444444444444444444443
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=3.3e-08 Score=99.84 Aligned_cols=384 Identities=12% Similarity=0.100 Sum_probs=220.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCC-HHHHHHHHHHHHhCCChHH
Q 005130 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEG 110 (713)
Q Consensus 34 ~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~ 110 (713)
...++|++++|++.+.+.++.. |+..+++......+...|++++..+..-... +|+ +-.+..-.+++-..|++++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 3447899999999999998865 6656777777777888888888888766544 233 3345555566667777777
Q ss_pred HHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHHc-----------
Q 005130 111 AFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-AG--IEPNVHTYGALIDGCAKA----------- 175 (713)
Q Consensus 111 A~~l~~~m~-~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g--~~~~~~~~~~li~~~~~~----------- 175 (713)
|+.=..-.. -.|+. |..+--.+=+.+- ..|.+...+-.+ .+ +-|+....++..+.+...
T Consensus 202 al~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 202 ALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred HHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 653222111 11111 1100000000000 111111111111 11 224433333333322110
Q ss_pred --------------C---CHHHHHHHHHHHHh---CCCCC---CH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 005130 176 --------------G---QVAKAFGAYGIMRS---KNVKP---DR------VVFNALITACGQSGAVDRAFDVLAEMNAE 226 (713)
Q Consensus 176 --------------g---~~~~A~~l~~~m~~---~g~~p---d~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (713)
+ .+.+|...+.+-.. ..... |. .+...-...+.-.|+.-.|.+-|+.....
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 0 12222222221110 00000 11 11111111223356777777777776643
Q ss_pred CCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005130 227 VHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (713)
Q Consensus 227 ~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 305 (713)
.|. ...|--+..+|....+.++....|....+.+ +.++.+|..-...+.-.+++++|..=|++....... +..
T Consensus 356 ----~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~ 429 (606)
T KOG0547|consen 356 ----DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAY 429 (606)
T ss_pred ----CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhH
Confidence 222 2226666667888888888888888887776 556677777777777778888888888887776443 445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------H--HH
Q 005130 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-------V--ST 376 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-------~--~~ 376 (713)
.|.-+--+..+.++++++...|++.+++ ++..+.+|+-....+...++++.|.+.|+...+. .|+ . ..
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhh
Confidence 5555555556777888888888887766 4556778888888888888888888888877654 222 1 11
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
--+++..- =.+++..|++++++..+. .| ....|.+|...-.+.|+.++|+++|+....
T Consensus 507 ~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 507 HKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11111111 237788888888887763 44 456777888888888888888888876553
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=1.2e-06 Score=88.45 Aligned_cols=359 Identities=15% Similarity=0.116 Sum_probs=267.3
Q ss_pred HHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 005130 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (713)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 147 (713)
-.+++++..|..+|+... ..++..|--.+..=.++.....|..++++.+..-...|. .|-.-+.+=-..|++.-|.
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHH
Confidence 345788889999999765 467778888888889999999999999999875323233 4444555566779999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 005130 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (713)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (713)
++|+.-.+- .|+...|++.|+.=.+.+.++.|..+|++.+-. .|++.+|---...=-++|....|.++|......-
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999998875 899999999999999999999999999999854 7999999988888889999999999999876531
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH--------HHHHHHC
Q 005130 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQTGDWEFACSV--------YDDMTKK 298 (713)
Q Consensus 228 ~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l--------~~~m~~~ 298 (713)
..-.-+...+.+...--.++..++.|.-+|+-..+.-... ....|..+...--+-|+....... |+.+.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1111223345555555566788999999998877653221 145566666665666665443333 3445555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH--------HHHhcCCHHHHHHHHHHHHhC
Q 005130 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI--ISYSSLMG--------ACSNAKNWQKALELYEHMKSI 368 (713)
Q Consensus 299 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~ 368 (713)
+.. |-.+|--.+..-...|+.+...++|+..+.. ++|-. ..|...|. .-....+++.+.++|+...+.
T Consensus 318 np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 NPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred CCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 433 6677777888778889999999999998876 34421 12222221 113578899999999988873
Q ss_pred CCCCCHHHHHHHHHHH----HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005130 369 KLKPTVSTMNALITAL----CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (713)
Q Consensus 369 ~~~p~~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 439 (713)
++....||.-+--.| .++.+...|.+++...+ |..|-..+|...|..-.+.+.++..+.+++..++.+
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 233455655544444 46788999999998776 578999999999999999999999999999999853
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=3.6e-09 Score=113.65 Aligned_cols=249 Identities=16% Similarity=0.148 Sum_probs=145.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005130 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (713)
Q Consensus 116 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 195 (713)
..+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-...+-+...++.++.+...+++.+.+. .|
T Consensus 14 a~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep 81 (1088)
T KOG4318|consen 14 ALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EP 81 (1088)
T ss_pred HHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CC
Confidence 34444455555555555555555555555444 4444444444444444555555444444444333 34
Q ss_pred CHHHHHHHHHHHHhcCCHH-----------------------HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005130 196 DRVVFNALITACGQSGAVD-----------------------RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (713)
Q Consensus 196 d~~~~~~li~~~~~~g~~~-----------------------~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~ 252 (713)
-..||..|..+|...||+. ....++..+... .+.-||..+ ++....-.|-++.
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~-p~~lpda~n---~illlv~eglwaq 157 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC-PHSLPDAEN---AILLLVLEGLWAQ 157 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC-cccchhHHH---HHHHHHHHHHHHH
Confidence 4445555555555554432 222222222111 233344332 3333455566666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (713)
Q Consensus 253 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 331 (713)
+.+++..++...... +... ++.-+.... .+++-...-....+ .|+..+|..++.+...+|+.+.|..++.+|+
T Consensus 158 llkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 666665554432111 1111 133222222 22332222222222 5899999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 005130 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (713)
Q Consensus 332 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 389 (713)
+.|++.+..-|..|+-+ .++..-+..+.+.|.+.|+.|+..|+...+..+.++|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999998888888765 78888889999999999999999999988888877665
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=3e-11 Score=86.26 Aligned_cols=50 Identities=36% Similarity=0.658 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005130 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (713)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 209 (713)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=3.4e-07 Score=95.59 Aligned_cols=407 Identities=17% Similarity=0.196 Sum_probs=216.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 005130 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 114 (713)
|+++|++..-...|+..++.-.+.....+.-..+++..+.+-.+-++++++.-..-++..-+-.|..++..+++++|-+.
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~ 191 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQR 191 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHH
Confidence 44788888888888887776544444455555666666666666677776655444444455666666666777666666
Q ss_pred HHHHHHcC------CCCCH--------------------------------------HHHHHHHHHHHHcCChhHHHHHH
Q 005130 115 LRLVQEAG------LKADC--------------------------------------KLYTTLITTCAKSGKVDAMFEVF 150 (713)
Q Consensus 115 ~~~m~~~g------~~pd~--------------------------------------~~~~~li~~~~~~g~~~~A~~~~ 150 (713)
+...+... .+.+. ..|++|.+-|.+.|.++.|..+|
T Consensus 192 la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 192 LATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 65543210 11222 24555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHHHHhCC-----------CCCCH
Q 005130 151 HEMVNAGIEPNVHTYGALIDGCAKAGQ----------------------VAKAFGAYGIMRSKN-----------VKPDR 197 (713)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~----------------------~~~A~~l~~~m~~~g-----------~~pd~ 197 (713)
++.... ...+.-|+.+.++|++... ++-.+.-|+.+.... -+-++
T Consensus 272 eeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 272 EEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 554443 2233334444444443211 111111222221110 00011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---
Q 005130 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--- 268 (713)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~--- 268 (713)
..|..-. -...|+..+-...|.+.... +.|- ...|..+.+.|-..|+++.|..+|++..+...+.-
T Consensus 350 ~eW~kRV--~l~e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 350 EEWHKRV--KLYEGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred HHHHhhh--hhhcCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 1111111 11123344445555554432 2221 23466677777788888888888887766554322
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----------P-------DEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (713)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p-------~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 331 (713)
..+|..-...-.+..+++.|+++.++.....-. | +...|+..++.-...|-++....+++.+.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345555566666777777777777665432111 1 22345555555555677777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCC
Q 005130 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCD---GDQLPKTMEVLSDMKSLGLCP 407 (713)
Q Consensus 332 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p 407 (713)
+..+.....+.|- .-.+-....++++.++|++-...--.|++ ..||..+.-+.+ .-..+.|..+|++..+ |++|
T Consensus 505 dLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 505 DLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 6654322222221 11233445577777777765544334554 467776655543 3457888888888877 6666
Q ss_pred CHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 005130 408 NTITYSILL--VACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCII 451 (713)
Q Consensus 408 ~~~t~~~ll--~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li 451 (713)
...-+.-|+ ..-...|....|+.++++... ++.+. ..+||..|
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 543322222 222345777778888877543 23332 33455555
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.22 E-value=5.3e-10 Score=119.86 Aligned_cols=254 Identities=17% Similarity=0.157 Sum_probs=184.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 005130 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (713)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (713)
.++..+...|+.||.+||..+|.-||..|+++.|- +|.-|.-+..+.+...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 9999988888888999999999999988876543
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCCHHHH---------------HHHHHHHHhcCCH
Q 005130 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-------YNIKGTPEVY---------------TIAINCCSQTGDW 285 (713)
Q Consensus 228 ~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~---------------~~li~~~~~~g~~ 285 (713)
.|...||..|+.+|...||+..-..+-+.+.. .|+. ....| ...+.-..-.|.+
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 56677999999999999997652222222221 1211 11111 1233334445666
Q ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005130 286 EFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (713)
Q Consensus 286 ~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 364 (713)
+.+++++..|....- .|-.+ +++-+..... -..++........-.|++.+|.++++.-...|+++.|..++.+
T Consensus 156 aqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 666666665543321 12212 2333332222 2233333322221258999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005130 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (713)
Q Consensus 365 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (713)
|++.|++-+..-|-.|+.+ .+...-+..+++.|.+.|+.|+..|+...+..|...|..
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 9999999998888888877 788888889999999999999999999888888775543
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=1.4e-08 Score=99.74 Aligned_cols=197 Identities=16% Similarity=0.112 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005130 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (713)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 207 (713)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344555555555566666666555555432 2234455555555555555655655555555442 22344444555555
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005130 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
...|++++|.+.+.+..... ........+..+...+...|++++|...|....+.. +.+...+..+...+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554320 111122233334444455555555555555444432 2233344444444444555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005130 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (713)
Q Consensus 288 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 329 (713)
|...+++.... ...+...+..+...+...|+.+.|..+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55554444433 112233333344444444444444444433
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=1.2e-08 Score=113.40 Aligned_cols=249 Identities=12% Similarity=0.011 Sum_probs=175.3
Q ss_pred hHHHHHHHHHhhhCC--CC-CHHHHHHHHHHHH---------hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005130 74 QKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 141 (713)
.+..++|+.+|++.. .| +...|..+..++. ..+++++|...+++..+.. +.+..++..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456788999988754 33 4556665554433 2345789999999998875 456778888888899999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (713)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 221 (713)
++++|...|++..+.. +.+...+..+...|...|++++|+..+++..+.... +...+..++..+...|++++|...+.
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999998875 335677888889999999999999999999887422 23333444555667899999999998
Q ss_pred HhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 005130 222 EMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-G 299 (713)
Q Consensus 222 ~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g 299 (713)
+.... ..|+ ...+..+..++...|++++|...+..+.... +.+....+.+...|...| +.|...++.+.+. .
T Consensus 431 ~~l~~---~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 431 ELRSQ---HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHh---ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 87653 1243 4456677788889999999999998875543 334455667777777777 4788877776553 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005130 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (713)
Q Consensus 300 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 334 (713)
..|....+..+ .|.-.|+-+.+... +++.+.+
T Consensus 505 ~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 22222333333 34445666666655 7777664
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=1.5e-07 Score=93.38 Aligned_cols=287 Identities=13% Similarity=0.066 Sum_probs=226.1
Q ss_pred hHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005130 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 150 (713)
.|++..|.++..+.. +.....|-.-..+.-+.|+.+.+-..+.+.-+.--.++...+-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 478888888876532 23344555556677788999999999999887643566777888888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005130 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~li~~~~~~g~~~~A~~~~~~m 223 (713)
+.+.+.+ +.+........++|.+.|++.....+...|.+.|.-.|. .+|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9988876 447788999999999999999999999999999876654 45777887777777777766677666
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC
Q 005130 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIP 302 (713)
Q Consensus 224 ~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p 302 (713)
... ...+...-.+++.-+.++|+.++|.++..+..+++..++.. ..-.+.+-++.+.-++..++-.+. +..
T Consensus 256 pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~- 327 (400)
T COG3071 256 PRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED- 327 (400)
T ss_pred cHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC-
Confidence 542 34556677788889999999999999999998887766521 223456677887777777775554 444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005130 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (713)
Q Consensus 303 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 372 (713)
...+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+++++....-.+|
T Consensus 328 -p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 -PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred -hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 478899999999999999999999977765 6899999999999999999999999998876433333
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=2.4e-08 Score=97.99 Aligned_cols=200 Identities=14% Similarity=0.056 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005130 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
...+..+...|...|++++|...++...+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555566666666666666666655543 334555666666666666666666666666555332 34455556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH
Q 005130 314 AGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 392 (713)
+...|++++|...+....+... ......+..+...|...|++++|...|++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666655321 2233455556666777777777777777766542 2245566667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
|.+.+++..+. .+.+...+..+...+...|+.+++..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777776664 233455555666666677777777776665543
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.8e-07 Score=96.39 Aligned_cols=284 Identities=10% Similarity=0.071 Sum_probs=223.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHH
Q 005130 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (713)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~ 237 (713)
..-|......-.+-+-..+++.+..++++...+.. +++...+..=|..+...|+..+-..+=.++... .+....+|
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~---yP~~a~sW 315 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL---YPSKALSW 315 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCCcch
Confidence 34466666666777788899999999999998774 566677777777888888887777666666642 34557899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHH
Q 005130 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GV-IPDEVFLSALIDFA 314 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~-~p~~~t~~~li~~~ 314 (713)
-++.--|.-.|+..+|++.|.+....+ +.-...|-.+...|+-.|..++|...+...-+. |. .| ..| +.--|
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LY--lgmey 390 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLY--LGMEY 390 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHH--HHHHH
Confidence 999988999999999999999876654 222468999999999999999999988776553 32 22 222 33347
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHhCC
Q 005130 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI--KLK----PTVSTMNALITALCDGD 388 (713)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~----p~~~~~~~li~~~~~~g 388 (713)
.+.+.++.|.+.|.+..... +.|+.+++-+.-...+.+.+.+|...|+..... .+. .-..+++.|..+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 88999999999999888763 668889999988888999999999999987621 011 13456888999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005130 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (713)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (713)
.+++|+..|++.+.. .+-|..|++++.-.+...|+++.|.+.|.+..- +.|+..+...++..+
T Consensus 470 ~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 999999999998874 234788999999999999999999999987764 789988888887654
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=6e-08 Score=107.87 Aligned_cols=231 Identities=10% Similarity=0.043 Sum_probs=141.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 005130 212 AVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACA---------NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (713)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 281 (713)
++++|.++|++.... .|+ ...|..+..+|. ..+++++|...+++..+.+ +.+...+..+...+..
T Consensus 276 ~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 276 SLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 356777777777643 443 334444444333 2234677888887777765 5566777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005130 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (713)
Q Consensus 282 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 361 (713)
.|++++|...|++..+.+.. +...+..+..++...|++++|...++...+.... +...+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence 88888888888887776543 4556667777777788888888888877776422 222333344445667778888888
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC-
Q 005130 362 YEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI-LLVACERKDDVEVGLMLLSQAKED- 438 (713)
Q Consensus 362 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~m~~~- 438 (713)
+++..+.. .| +...+..+...|...|+.++|.+.+.++... .|+..+... +...+...| +.+...++.+.+.
T Consensus 429 ~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 429 GDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 77776442 23 3445666677777788888888887776543 454444333 334445555 4666666665543
Q ss_pred CCCCCHHHHHHHHHHH
Q 005130 439 GVIPNLVMFKCIIGMC 454 (713)
Q Consensus 439 g~~p~~~~~~~li~~~ 454 (713)
...|......+++..+
T Consensus 504 ~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 504 QRIDNNPGLLPLVLVA 519 (553)
T ss_pred hHhhcCchHHHHHHHH
Confidence 3333333334444443
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=3e-08 Score=95.10 Aligned_cols=228 Identities=14% Similarity=0.083 Sum_probs=129.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHH-HHHHHHHH
Q 005130 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKAC 244 (713)
Q Consensus 166 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~-~~~ll~~~ 244 (713)
+.|.++|.+.|.+.+|.+-|+.-... .|-+.||-.|-++|.+..+...|+.+|.+-... .|-.+| ..-+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhHHHH
Confidence 45666666666666666666665554 445556666666666666666666666655432 233333 23344555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005130 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (713)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 324 (713)
-..++.++|.++|+...+.. +.++.....+...|.-.++++.|+..|+++++.|+. +...|..+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 56666666666666665544 334455555555566666666666666666666665 5555666666666666666666
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 325 EILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 325 ~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.-|.+....--.|+ ..+|-.|-......|++..|.+-|+-..... ..+...+|.|.-.-.+.|+.++|..+++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66665554332222 2345555555555666666666666554432 22345555555555566666666666655543
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=5.9e-07 Score=92.78 Aligned_cols=284 Identities=15% Similarity=0.090 Sum_probs=219.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005130 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (713)
Q Consensus 123 ~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 202 (713)
..-+........+-|...+++.+..++++...+.. +++...+..-|.++...|+..+-+.+=.+|.+. .+-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 44566666677777888899999999999988764 456667777778888999888888887888776 3556789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHH
Q 005130 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCS 280 (713)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~ 280 (713)
+.--|...|+..+|.+.|.....- .|. ...|-.....|+-.|..|.|...+...-+.-.. .-+..|.. --|.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~l----D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg--mey~ 391 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTL----DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG--MEYM 391 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhc----CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH--HHHH
Confidence 998888889999999999887543 333 347778888899999999999888766543111 11233433 3477
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCC
Q 005130 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS--VGIISYSSLMGACSNAKN 354 (713)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~~~~~~~~li~~~~~~g~ 354 (713)
+.+..+.|.+.|.+.....+. |+...+-+.-.....+.+.+|...|+..... +-. .-..+++.|..+|.+++.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 788999999999988766443 6667777766677788999999999877622 101 124568999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005130 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (713)
Q Consensus 355 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 418 (713)
+++|+..|++..... +.|..++.++.-.|...|+++.|.+.|.+..- +.||..+-+.+|..
T Consensus 471 ~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 999999999987654 66889999999999999999999999999875 78999888887763
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2e-05 Score=82.12 Aligned_cols=416 Identities=16% Similarity=0.141 Sum_probs=237.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHH--HHHH--
Q 005130 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML--MSVC-- 102 (713)
Q Consensus 28 ~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l--i~~~-- 102 (713)
-....|...++|.+++|.+...+++..+ |++ ..+|..++ ...+.+.+++|+.+.+.-.. ..+++.. =.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvV-alIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVV-ALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHh-hhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHH
Confidence 3444567779999999999999999876 444 33444333 34567889999977665331 1222222 3444
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005130 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (713)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (713)
.+.+..++|+..+. |..++ ..+...-...+.+.+++++|+++|+.+.+.+.+ .+...+.+-+.. ...+
T Consensus 90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a--~~a~ 158 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLA--VAAA 158 (652)
T ss_pred HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHH--HHHh
Confidence 46788999998887 33333 346666677788999999999999999776422 122222111100 0001
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHhhh--------CCCC---CCCCHH-HHHHHHHHHHH
Q 005130 182 FGAYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDHI-TIGALMKACAN 246 (713)
Q Consensus 182 ~~l~~~m~~~g~~pd~~~~~~li---~~~~~~g~~~~A~~~~~~m~~--------~~~~---~~pd~~-~~~~ll~~~~~ 246 (713)
... +.|......| ..+|..+. ..+...|++.+|++++..... ...+ +..+.. .-.-|.-++-.
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 0122222222 22333332 345567888888888776611 1000 000111 11223345667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcC----------------------------------------
Q 005130 247 AGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTG---------------------------------------- 283 (713)
Q Consensus 247 ~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g---------------------------------------- 283 (713)
.|+-++|..++..+.+.+....+ ..-|.++..-....
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888877776633221 11222222111111
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005130 284 -----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (713)
Q Consensus 284 -----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 356 (713)
..+.+.++-... .+-.|. ..+..++..+.+. .....+.+++...-+....-...+.-.++......|+++
T Consensus 317 ~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 011111111111 112232 3444555444332 235566666666655543333567777788889999999
Q ss_pred HHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC--CCCCCHHHHHHH----HHHHHhc
Q 005130 357 KALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSIL----LVACERK 422 (713)
Q Consensus 357 ~A~~l~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~l----l~a~~~~ 422 (713)
.|.+++. .+.+.+..|-. ..++...|.+.++.+-|..++.+.... .-.+......++ ...-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 66665555554 445667777777777787777776531 112222333333 3334567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-hHHHHHHHHHH
Q 005130 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEH 467 (713)
Q Consensus 423 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r-~~~~a~~l~~a 467 (713)
|+-++|...++++.+.. .+|..+..++|.+|++ ..++|..+...
T Consensus 472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~eka~~l~k~ 516 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDPEKAESLSKK 516 (652)
T ss_pred CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCHHHHHHHhhc
Confidence 99999999999999853 5788899999999988 66777766654
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.04 E-value=4.2e-05 Score=80.68 Aligned_cols=389 Identities=13% Similarity=0.116 Sum_probs=192.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHH
Q 005130 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (713)
..+++..-+.+.+.+.+.- |......++.+-.....|+.++|........ ..+.+.|..+.-.+....++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 4566666666666666532 3333333333333334455666666655433 2345666666666666667777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Q 005130 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN- 192 (713)
Q Consensus 114 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 192 (713)
.|+.....+ +.|...+.-+--.-++.++++-.......+.+.. +.....|..+..++.-.|+...|..+.++..+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777666654 3345555555444455566666655555555442 2234456666666666666666666666665543
Q ss_pred CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005130 193 VKPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (713)
Q Consensus 193 ~~pd~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 266 (713)
-.|+...|.-.. ....+.|..++|.+.+..-.. .+......--+-...+.+.+++++|..++..+..++ +
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-P 250 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-P 250 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-c
Confidence 234444443222 223445666666665554322 111112222233455666666666666666666654 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH-HHHH----------------------------------HHHHCCCCCCHHHHHHHH
Q 005130 267 GTPEVYTIAINCCSQTGDWEFAC-SVYD----------------------------------DMTKKGVIPDEVFLSALI 311 (713)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~-~l~~----------------------------------~m~~~g~~p~~~t~~~li 311 (713)
.+..-|-.+..++.+-.+.-+++ .+|. .+.+.|+.+ ++..+.
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 22333333333333222222222 3333 334444432 233333
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005130 312 DFAGHAGKVEAAFEILQEAKN----QG----------ISVGIIS--YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~----~g----------~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 375 (713)
..|-.....+-..++.-.+.. .| -+|.... +-.++..|-+.|+++.|....+....+ .|+.+
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH
Confidence 333222211111111111111 00 0233332 234455566666666676666666654 45432
Q ss_pred -HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005130 376 -TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (713)
Q Consensus 376 -~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 439 (713)
.|..-.+.+...|.+++|...+++..+.+ .||...=+--..-..++.++++|.++....-+.|
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 34444455666666777766666666543 3444333333344455666666666666665554
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=2.1e-06 Score=92.44 Aligned_cols=289 Identities=13% Similarity=0.130 Sum_probs=165.1
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhc---
Q 005130 136 TCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITACGQS--- 210 (713)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~-~li~~~~~~--- 210 (713)
.+...|++++|++.++.-.+. -+| ..........+.+.|+.++|..+|..+.+.+ |+...|. .+..+.+-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 345556666666666554333 223 3334455556666666666666666666653 3333333 333333111
Q ss_pred --CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005130 211 --GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 211 --g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
.+.+...++|+++... -|-......+.-.+..-..+ ..+...+..+...|++ .+++.+-..|......+-
T Consensus 89 ~~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 2345556666665432 12222221111111111112 2344445556666654 566666666665555555
Q ss_pred HHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005130 288 ACSVYDDMTKK----G----------VIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 288 A~~l~~~m~~~----g----------~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
...++...... + -.|.. .++..+...|-..|++++|++.++..++.. +..+..|..-...|-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 55555554322 1 12333 344556677778888888888888887764 2236677777888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHHhcC
Q 005130 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT------Y--SILLVACERKD 423 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t------~--~~ll~a~~~~g 423 (713)
.|++.+|.+.++...+.. .-|...-+-.+..+.++|+.++|.+++....+.+..|-... | .-...+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888877654 23555555566777788888888888887776654442211 1 23347788888
Q ss_pred CHHHHHHHHHHHHH
Q 005130 424 DVEVGLMLLSQAKE 437 (713)
Q Consensus 424 ~~~~a~~~~~~m~~ 437 (713)
++..|++-|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888877766654
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.02 E-value=9e-07 Score=94.15 Aligned_cols=241 Identities=20% Similarity=0.168 Sum_probs=136.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhCC---C-CCCCC-H
Q 005130 167 ALIDGCAKAGQVAKAFGAYGIMRSK-----N-VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEV---H-PVDPD-H 234 (713)
Q Consensus 167 ~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~---~-~~~pd-~ 234 (713)
.|..+|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++.... . ...|. .
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3445555555555555555444322 1 1222222 2235556667777777777776664310 1 11222 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 005130 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-VFLSALIDF 313 (713)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~ 313 (713)
.+++.|...|.+.|++++|...++...+ ++++.... ..|.. .-++.+...
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~-~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGA-SHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhcc-ChHHHHHHHHHHHHH
Confidence 4566667778888888888776654332 22221000 00111 123334444
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHH
Q 005130 314 AGHAGKVEAAFEILQEAKNQ-----GI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLK--P-TVSTMNA 379 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~-----g~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~--p-~~~~~~~ 379 (713)
|+..+++++|..+++...+. |. ..-..+++.|...|.+.|++++|.++|++.... +.. + ....++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 45555555555554443221 10 112357788888888888888888888876532 111 1 2346777
Q ss_pred HHHHHHhCCChhHHHHHHHHHH----HCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 380 LITALCDGDQLPKTMEVLSDMK----SLGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~----~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
|...|.+.+++.+|.++|.+.. ..|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8888888888888888887743 3231 233 3678889999999999999999887765
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=4.4e-08 Score=93.93 Aligned_cols=233 Identities=13% Similarity=0.078 Sum_probs=195.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHH
Q 005130 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITACG 208 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~-~li~~~~ 208 (713)
-+.+..+|.+.|.+.+|.+-|+.-.+. .|-+.||-.|-+.|.+..+++.|+.+|.+-.+. .|-.+||. -+.+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 367889999999999999999998877 677888999999999999999999999998876 56666664 4667788
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005130 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (713)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (713)
..++.++|.++++...+. -+.++.....+...|.-.++++-|.+.|+.+.+.|+ .++..|+.+.-+|.-.+++|.+
T Consensus 302 am~~~~~a~~lYk~vlk~---~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKL---HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHhHHHHHHHHHHHHhc---CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhh
Confidence 889999999999998764 134555666777788889999999999999999995 5788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 289 CSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 289 ~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
+.-|.+.+..-..|+. ..|-.+-......|++..|.+.|+.....+ ..+...+|.|.-.-.+.|++++|..+++...
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999998876554443 356677777788899999999999888765 4457889999988999999999999999887
Q ss_pred hCCCCCC
Q 005130 367 SIKLKPT 373 (713)
Q Consensus 367 ~~~~~p~ 373 (713)
.. .|+
T Consensus 457 s~--~P~ 461 (478)
T KOG1129|consen 457 SV--MPD 461 (478)
T ss_pred hh--Ccc
Confidence 54 454
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2e-05 Score=78.46 Aligned_cols=397 Identities=12% Similarity=0.052 Sum_probs=178.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC------------------CCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCC
Q 005130 29 LHSYNRLIRQGRISECIDLLEDMERKG------------------LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP 90 (713)
Q Consensus 29 ~~~~~~L~~~g~~~~A~~l~~~m~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 90 (713)
.+.++.+-+...+..|.+-|....... +.+.+.......+..+...++-+.|+.....+|+.
T Consensus 47 ~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t 126 (564)
T KOG1174|consen 47 LYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPT 126 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCcc
Confidence 344555557778888888888776532 11222222233344455567778888888777643
Q ss_pred C-HHHHHHHHHHHHhCCC-hHHHH--------------HHHHHHHHcC---------------CCCCHHHHHHHHHHHHH
Q 005130 91 T-LSTFNMLMSVCASSKD-SEGAF--------------QVLRLVQEAG---------------LKADCKLYTTLITTCAK 139 (713)
Q Consensus 91 ~-~~~~~~li~~~~~~g~-~~~A~--------------~l~~~m~~~g---------------~~pd~~~~~~li~~~~~ 139 (713)
- ..-.|.++..+.+.|- -.++. +.+.-..+.+ ++|...+...-+.+++.
T Consensus 127 ~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq 206 (564)
T KOG1174|consen 127 LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQ 206 (564)
T ss_pred ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHH
Confidence 2 2333444444333321 11111 1111111111 11222222223333332
Q ss_pred c--CChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHH
Q 005130 140 S--GKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV-FNALITACGQSGAVDR 215 (713)
Q Consensus 140 ~--g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~ 215 (713)
+ ++...|...+-.+.... ++-|+.....+.+.+...|+.++|+..|++.... .|+..+ ...-.-.+.+.|+++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 2 33333333333332221 2334555555566666666666666666555433 222111 1111112334455555
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005130 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (713)
Q Consensus 216 A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (713)
...+...+.... +-....|-.-........+++.|+.+-++..+.+ +.+...|-.-...+.+.+++++|.-.|+..
T Consensus 285 ~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 285 DSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred HHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 544444443210 0111122222223334445555555555554443 223334444444455556666666666555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC
Q 005130 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS-NAKNWQKALELYEHMKSIKLKPT 373 (713)
Q Consensus 296 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~-~~g~~~~A~~l~~~m~~~~~~p~ 373 (713)
+...+. +...|..|+..|...|++.+|.-+-....+. ++.+..+.+.+. ..|. ...--++|.++++.-... .|+
T Consensus 361 q~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~ 436 (564)
T KOG1174|consen 361 QMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPI 436 (564)
T ss_pred Hhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCc
Confidence 443211 4455666666666666665555444443332 122233333221 1111 111224555555544432 343
Q ss_pred H-HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 374 V-STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 374 ~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
. ...+.+...+...|..++++.+++.... ..||....+.|...+...+.+.++...|.....
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2 3344445555555666666666655544 355555555555555555566666555555444
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.95 E-value=2e-06 Score=92.66 Aligned_cols=232 Identities=15% Similarity=0.132 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005130 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY-TTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~-~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (713)
........+.+.|+.++|..+++.+++++ |+...| ..+..+..-. .+.+...++|+++...- |...+...
T Consensus 40 ~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~r 115 (517)
T PF12569_consen 40 VLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRR 115 (517)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhH
Confidence 33445566777777788888887777764 444444 3344433222 24566677777776542 33322222
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC------------CCCCCCH
Q 005130 168 LIDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------------HPVDPDH 234 (713)
Q Consensus 168 li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------~~~~pd~ 234 (713)
+.-.+..-..+ ..+...+..+..+|++ .+|+.|-..|......+-..+++....... ..-.|..
T Consensus 116 l~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~ 192 (517)
T PF12569_consen 116 LPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPST 192 (517)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchH
Confidence 22222221222 2344455666677753 356666666665555554555554443210 0012332
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005130 235 I--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (713)
Q Consensus 235 ~--~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 312 (713)
. ++.-+...|...|++++|..+.+...+.. +..+..|..-...|-+.|++.+|.+.++........ |...-+-.+.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aK 270 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHH
Confidence 2 33444555666666666666666666554 333556666666666666666666666666665544 5555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 005130 313 FAGHAGKVEAAFEILQEAKNQG 334 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g 334 (713)
.+.++|++++|.+++....+.+
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCC
Confidence 6666666666666666555544
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2e-05 Score=80.21 Aligned_cols=188 Identities=16% Similarity=0.111 Sum_probs=132.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005130 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 323 (713)
+.-+|+.-.|..-|+...+....+ ...|--+..+|.+..+.++-...|.+..+.+.. |..+|-.-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 344678888888888887766333 233777777888888888888888888876654 555666666666677888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 005130 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (713)
Q Consensus 324 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (713)
..-|++..... +.++..|-.+.-+..+.+.+++++..|++.++. ++.-+..||.....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 88888887764 335666777777777888888899999888754 3444678888888888888999999888887652
Q ss_pred CCCCC-------HHHHH--HHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 404 GLCPN-------TITYS--ILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 404 g~~p~-------~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.|+ ..++. .++.. .-.+++..|..+++...+.
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL 532 (606)
T ss_pred --ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc
Confidence 333 22221 12211 1337888888888887763
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=6.3e-05 Score=79.39 Aligned_cols=359 Identities=13% Similarity=0.107 Sum_probs=233.3
Q ss_pred hHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005130 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 150 (713)
.+++...+++.+.+. +....|.....-.+...|+.++|....+.-.+.. ..+.+.|..+.-.+....++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 445555555554432 1122344444444566799999999988877754 346678888888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 005130 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230 (713)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 230 (713)
......+ +-|...|.-+--.-++.++++.......+..+.. +.....|..+..++--.|+...|..++++..+... -
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-~ 175 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-T 175 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Confidence 9999876 3477788877777778888888888777776652 33567788888899999999999999999877531 3
Q ss_pred CCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005130 231 DPDHITIGALM------KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (713)
Q Consensus 231 ~pd~~~~~~ll------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 304 (713)
.|+...+.-.. ....+.|.++.|.+.+......- ......-.+-...+.+.+++++|..++..++... ||.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 45655554332 34567888898888876554331 2222334566778899999999999999999874 566
Q ss_pred HHHHHHHH-HHHhcCCHHHHH-HHHHHHH----------------------------------HCCCCCCHHHHHHHHHH
Q 005130 305 VFLSALID-FAGHAGKVEAAF-EILQEAK----------------------------------NQGISVGIISYSSLMGA 348 (713)
Q Consensus 305 ~t~~~li~-~~~~~g~~~~a~-~~~~~m~----------------------------------~~g~~~~~~~~~~li~~ 348 (713)
.-|.-.+. ++.+--+.-++. .+|.... +.|+++ ++..+...
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SL 329 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSL 329 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHH
Confidence 65554444 333232222332 3444332 233221 22333333
Q ss_pred HHhcCCHHH----HHHHHHHHHhCC----------CCCCHHHHH--HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-H
Q 005130 349 CSNAKNWQK----ALELYEHMKSIK----------LKPTVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-T 411 (713)
Q Consensus 349 ~~~~g~~~~----A~~l~~~m~~~~----------~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t 411 (713)
|-.-...+- +..+...+...| -+|....|+ .++..|-..|+++.|+..++..++. .|+.+ .
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEl 407 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIEL 407 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHH
Confidence 322111111 111111111111 145555554 4677888999999999999998874 67654 4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005130 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (713)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (713)
|..=...+.+.|++++|..++++..+.. .||..
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~ 440 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA 440 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence 5555688999999999999999988754 34443
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=0.00015 Score=70.93 Aligned_cols=377 Identities=13% Similarity=0.096 Sum_probs=224.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCCh
Q 005130 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 108 (713)
..-++.+.++..|+.+++--...+- .....+..-+.......|++++|+..+..+. .++...+-.|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4556788889999998886664442 2223344445555567889999998887643 45666666666666667788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005130 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 188 (713)
.+|..+-.... .++-.-..|++...+.++-++-....+.+... ..---+|.+..-..-.+++|+++|.+.
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88877654332 22333334455555667766666666665432 122233444444445677888888877
Q ss_pred HhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc--CCH---------------
Q 005130 189 RSKNVKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--GQV--------------- 250 (713)
Q Consensus 189 ~~~g~~pd~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~--g~~--------------- 250 (713)
... .|+-...|.-+ -+|.+..-++-+.++++--... ++.+.+..|.......+. |+.
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 765 34555555433 3455556666666666655542 233334444333322221 221
Q ss_pred ------------------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005130 251 ------------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (713)
Q Consensus 251 ------------------~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 312 (713)
+.|++++--+.+. -+..--.++-.|.+.++..+|..+.+++.- ..|-......++.
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 1222222111111 124455677788999999999999887643 3454444444443
Q ss_pred HH-H----hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005130 313 FA-G----HAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 313 ~~-~----~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
+. + ....+.-|.+.|+..-..+..-|.. --.++...+.-..++++..-.++.+...-...|...+| +..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 22 1 1223556777777665555443332 23445555566677888888888887665455666555 7789999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 005130 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLL 432 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~ 432 (713)
.|.+.+|.++|-+.....+ -|..+|.+++ .+|.+.+..+.|+.++
T Consensus 406 tgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred hcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999976654333 3667777655 7788999999987765
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.83 E-value=5.8e-06 Score=84.18 Aligned_cols=218 Identities=11% Similarity=-0.021 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005130 212 AVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (713)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~pd--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (713)
..+.++.-+.++.... ...|+ ...|..+...|.+.|+.++|...|+...+.+ +.++..|+.+...|...|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4455555555555321 22222 2345556666777777777777777777665 455677777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005130 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (713)
Q Consensus 290 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 369 (713)
..|++..+.... +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 777777765433 45566667777777788888887777777653 222111122222344567788888886544321
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005130 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-----LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (713)
Q Consensus 370 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 439 (713)
.|+...| ...+...|+..++ +.+..+.+.- +.| ....|..+...+.+.|++++|+..|++..+.+
T Consensus 196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2332222 1222334555444 3444444210 111 23467777788888888888888888888754
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.83 E-value=1.9e-06 Score=87.76 Aligned_cols=95 Identities=13% Similarity=-0.036 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005130 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|.+.|+...+... -+..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4444444555555555555555555432 22344555555555555555555555555554321 133444445555555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 005130 175 AGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~ 191 (713)
.|++++|++.|++..+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555443
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.81 E-value=1.3e-06 Score=92.95 Aligned_cols=234 Identities=16% Similarity=0.147 Sum_probs=135.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhC-----C--CCCCHH
Q 005130 133 LITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVHT-YGALIDGCAKAGQVAKAFGAYGIMRSK-----N--VKPDRV 198 (713)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~pd~~ 198 (713)
|...|...|+++.|..+++...+. |. .|.+.+ .+.+...|...+++++|..+|+++... | .+.-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 555666666666666666655442 11 122222 223455666667777777776666431 2 111234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC----
Q 005130 199 VFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHI-TIGALMKACANAGQVDRAREVYKMIHKY---NIK---- 266 (713)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~~pd~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~---~~~---- 266 (713)
+++.|..+|.+.|++++|...+++...- ..+ ..|.+. .++.+...|+..+++++|..+++...+. -+.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 5556666677777766665555443220 011 122222 3455566677777777777777644331 011
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC
Q 005130 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-----G-VIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN----QGI 335 (713)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~ 335 (713)
.-..+++.|...|.+.|++++|.++|++.... | ..+ ....++-+...|.+.+...+|.++|.+... .|.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 12356778888888888888888888776532 1 111 234566777778788887777777765432 221
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 336 --SVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 336 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
+-...+|..|...|.+.|+++.|.++.+...
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2234678888888888888888888877665
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=6.4e-05 Score=73.45 Aligned_cols=405 Identities=11% Similarity=0.066 Sum_probs=207.8
Q ss_pred hHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhC
Q 005130 28 QLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (713)
Q Consensus 28 ~~~~~~~L~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (713)
++..|-+.+ +.|++++|+..+.-+....-.|....+ .+.-...-.|.+.+|..+-...+ .++..-..|....-+.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v--nLAcc~FyLg~Y~eA~~~~~ka~-k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV--NLACCKFYLGQYIEAKSIAEKAP-KTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch--hHHHHHHHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHh
Confidence 455565544 678888888888776655432222212 12222223566777777665544 2333444455556666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHH
Q 005130 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-DGCAKAGQVAKAFGA 184 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~l 184 (713)
++-++-..+++.+... ..---+|.+.....-.+.+|+++|...... .|+-...|.-+ -+|.+..-++-+.++
T Consensus 135 ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 7766666666655532 122233444444445677888888887765 34444444333 356666777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH--------HH--------------------
Q 005130 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH--------IT-------------------- 236 (713)
Q Consensus 185 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~--------~~-------------------- 236 (713)
++-..+. ++-++..-|.......+.=.-..|.+-..++......--|-. ++
T Consensus 208 l~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPE 286 (557)
T KOG3785|consen 208 LKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPE 286 (557)
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChH
Confidence 7766654 223344444444433333222233333333322110001100 00
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHH-H
Q 005130 237 -IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-------DWEFACSVYDDMTKKGVIPDEVF-L 307 (713)
Q Consensus 237 -~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t-~ 307 (713)
-..|+--|.+.+++.+|..+.+++. +.++.-|-.-.-.+...| ...-|...|+-.-+++..-|... -
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR 362 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence 0112224566677777776655442 222333322111222222 24455555555444443323221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHh
Q 005130 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA-LITALCD 386 (713)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~-li~~~~~ 386 (713)
-++..++.-..++++.+-.+..+...-...|.+.+| +..+++..|++.+|+++|-.+....+ .|..+|-+ |..+|.+
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHh
Confidence 233334444556677776666665543333444443 56777778888888888876654332 34455544 4467778
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005130 387 GDQLPKTMEVLSDMKSLGLCPNTITYSIL-LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (713)
+++++-|.+++-.+.. ..+..+...+ .+-|.+.+.+--|-+.|+.+.. ..|+.+.|..=-.+|
T Consensus 441 nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGAC 504 (557)
T ss_pred cCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchH
Confidence 8888877766544432 2234443333 3667777777777777766655 456666555444444
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=4.1e-05 Score=80.69 Aligned_cols=303 Identities=15% Similarity=0.025 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---H
Q 005130 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA---L 203 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~---l 203 (713)
.|..+...+...++.+.+.+.+....+... .++.. ........+...|++++|..++++..... +.|...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344444444445555555444444333211 11211 11112223445566666666666665542 223333331 1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 005130 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (713)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 282 (713)
.......+..+.+.+.+... .+..|+ ......+...+...|++++|...++...+.. +.+...+..+...|...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11111233444444444331 122233 2333344456666777777777777766654 44455666666777777
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCH
Q 005130 283 GDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAKNW 355 (713)
Q Consensus 283 g~~~~A~~l~~~m~~~g~-~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~-~--~li~~~~~~g~~ 355 (713)
|++++|...+++...... .|+. ..|..+...+...|+.++|..+++....... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 777777777776655422 1222 2344556666677777777777776643321 1111111 1 223333333432
Q ss_pred HHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-------C-CHHHHHHHHHHHHhcC
Q 005130 356 QKALEL---YEHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-------P-NTITYSILLVACERKD 423 (713)
Q Consensus 356 ~~A~~l---~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-------p-~~~t~~~ll~a~~~~g 423 (713)
..+.+. ...-..... ............++...|+.++|..++..+...... . ..........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 111111100 011122224566677788888888888887653211 0 1111222224556788
Q ss_pred CHHHHHHHHHHHHH
Q 005130 424 DVEVGLMLLSQAKE 437 (713)
Q Consensus 424 ~~~~a~~~~~~m~~ 437 (713)
+.++|.+.+.....
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877664
No 79
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.77 E-value=0.00049 Score=72.71 Aligned_cols=452 Identities=11% Similarity=0.160 Sum_probs=281.9
Q ss_pred chhHHHHHHHH--hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHH-HH------HH-------hhHHHHHHHHHhhhCC
Q 005130 26 SEQLHSYNRLI--RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFF-NV------CK-------SQKAIKEAFRFFKLVP 88 (713)
Q Consensus 26 ~~~~~~~~~L~--~~g~~~-~A~~l~~~m~~~~~~~~~~~~~~~l~-~~------~~-------~~~~~~~A~~~~~~~~ 88 (713)
.-++.+|-+++ +.|... .-..+|+...+.= +......+..+- +. |. -++.++.++.++..||
T Consensus 24 p~svk~W~RYIe~k~~sp~k~~~~lYERal~~l-p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmp 102 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAGSPDKQRNLLYERALKEL-PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMP 102 (835)
T ss_pred chhHHHHHHHHHHHccCChHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 35678898888 455443 4555677777653 223344444331 11 11 1233444555554554
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005130 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (713)
..|-..+......++...-...|+..+..- +......|...+......+-++.+..++++..+. ++..-+-
T Consensus 103 ----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~ee 174 (835)
T KOG2047|consen 103 ----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREE 174 (835)
T ss_pred ----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHH
Confidence 467777788888999999999998877542 2233457888888888889999999999999864 4455777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCCCC--HHH
Q 005130 168 LIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVVFNALITACGQSGAVDR---AFDVLAEMNAEVHPVDPD--HIT 236 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~pd--~~~ 236 (713)
-|..+++.+++++|-+.+...... .-+.+-..|.-+-...+++.+.-. ...++..+. +.-+| -..
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi----~rftDq~g~L 250 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI----RRFTDQLGFL 250 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc----ccCcHHHHHH
Confidence 888999999999999999887643 124556667777776666544332 233444443 33455 357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------------cCC------HHHHHHHHHH
Q 005130 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----------------TGD------WEFACSVYDD 294 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----------------~g~------~~~A~~l~~~ 294 (713)
|++|.+-|.+.|.++.|..+|++....-.. ..-|+.+-++|++ .++ ++-...-|+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 899999999999999999999987664221 1223333333322 111 2223333444
Q ss_pred HHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHH
Q 005130 295 MTKKGV-----------IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GIISYSSLMGACSNAKNWQK 357 (713)
Q Consensus 295 m~~~g~-----------~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~------~~~~~~~li~~~~~~g~~~~ 357 (713)
+..... .-++.+|..-+.. ..|+..+-...+.++.+. +.| -...|..+...|-+.|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 332211 0123333333322 346677777788877664 122 23568889999999999999
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHC----------CCCC-------CHHHHHHHHH
Q 005130 358 ALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL----------GLCP-------NTITYSILLV 417 (713)
Q Consensus 358 A~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----------g~~p-------~~~t~~~ll~ 417 (713)
|+.+|++..+..++.- ..+|..-...-.++.+++.|+++.++.... |-.| +...|+..++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999886543221 234555555666788999999988876531 1111 1224555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCHHH-HHHHHHHHHhhHHHHHHHHHHhhhccCCCC-----ccccccHH------
Q 005130 418 ACERKDDVEVGLMLLSQAKEDGV-IPNLVM-FKCIIGMCSRRYEKARTLNEHVLSFNSGRP-----QIENKWTS------ 484 (713)
Q Consensus 418 a~~~~g~~~~a~~~~~~m~~~g~-~p~~~~-~~~li~~~~r~~~~a~~l~~a~~~~~~~~~-----~~~~~~~~------ 484 (713)
.-...|-++....+++++++..+ .|.+.. |..+ +++-..++++...|+.+-+ ..-..|+.
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmf-------LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF-------LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 66667888888889999888644 344433 2222 4444555666666665522 22234543
Q ss_pred ---------HHHHHHHHHHHcCCCccHH
Q 005130 485 ---------LALMVYREAIVAGTIPTVE 503 (713)
Q Consensus 485 ---------~A~~~~~~m~~~g~~P~~~ 503 (713)
.|..+|++.++ |+.|...
T Consensus 559 ~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 48999999988 7777764
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.75 E-value=5.8e-05 Score=79.55 Aligned_cols=197 Identities=14% Similarity=0.026 Sum_probs=90.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCC--HHHHHHHHHHH
Q 005130 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGT--PEVYTIAINCC 279 (713)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~--~~~~~~li~~~ 279 (713)
+...+...|++++|.+.+++.... .+.+...+..+..+|...|++++|...++....... .++ ...|..+...+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~---~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALEL---NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 334445555555555555555432 122233444455555555555555555555444321 111 12334455556
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CCCHHHHHHHHHHHHh
Q 005130 280 SQTGDWEFACSVYDDMTKKGV-IPDEVFL-S--ALIDFAGHAGKVEAAFEI---LQEAKNQGI-SVGIISYSSLMGACSN 351 (713)
Q Consensus 280 ~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~li~~~~~~g~~~~a~~~---~~~m~~~g~-~~~~~~~~~li~~~~~ 351 (713)
...|++++|..+|++...... .+..... + .++.-+...|....+.+. ......... ............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 666666666666666543221 1111111 1 222222223322222211 111111100 1111222345666777
Q ss_pred cCCHHHHHHHHHHHHhCCCC---C-----CHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 352 AKNWQKALELYEHMKSIKLK---P-----TVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~~~~---p-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.|+.+.|..+++.+...... - .+...-...-++...|+.++|++++.+...
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888887653211 0 111122222345578899999998887654
No 81
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=0.00016 Score=86.59 Aligned_cols=337 Identities=9% Similarity=-0.038 Sum_probs=174.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHH
Q 005130 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI------EPNV--HTYGALIDGCA 173 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~~--~~~~~li~~~~ 173 (713)
....|++..+...+..+.......+..........+...|+++++..++......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 334556665555554432111111222223334445566777777777776543210 0111 11122233455
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---CCHHHHHHHHHHHHH
Q 005130 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDHITIGALMKACAN 246 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---pd~~~~~~ll~~~~~ 246 (713)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+......... ....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 677888888877776543111121 2334455556667888887777776643211111 112344455566777
Q ss_pred cCCHHHHHHHHHHHHhc----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHH
Q 005130 247 AGQVDRAREVYKMIHKY----NIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIP--DEVFLSALIDFAG 315 (713)
Q Consensus 247 ~g~~~~A~~~~~~m~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~~~t~~~li~~~~ 315 (713)
.|+++.|...+++.... +... ....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 78888887777655432 2111 1223444555566678888887777765442 1111 1233344455666
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 005130 316 HAGKVEAAFEILQEAKNQG--ISVGII--S--YSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCD 386 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~g--~~~~~~--~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~ 386 (713)
..|+.+.|...+....... ...... . ....+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 7778887777776664321 011000 0 01122334556777777777666543211111 1113345556777
Q ss_pred CCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.|++++|...+.+.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888887777776542 22222 234445556677778888888777777654
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.71 E-value=1.5e-05 Score=73.65 Aligned_cols=199 Identities=16% Similarity=0.071 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005130 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 208 (713)
+...|.-.|...|+...|.+-+++..+.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34456667777888888888888877764 2245677777778888888888888888777653 334566677777777
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005130 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (713)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (713)
..|.+++|.+.|++.... ....--..+|..+.-+..+.|+.+.|...|+...+.+ +..+.+.-.+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 778888888888777653 1122223466666666777788888888888777765 34456666777777778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 289 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
...++.....+. ++..+.-..|......|+.+.+-+.=..+.+
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888877777666 6777777777777777777766665555544
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=0.00073 Score=67.73 Aligned_cols=291 Identities=12% Similarity=0.043 Sum_probs=204.4
Q ss_pred CChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHH
Q 005130 106 KDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT-YGALIDGCAKAGQVAKAFG 183 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~ 183 (713)
++...|.+.+-.+... -++.|+.....+...+...|+.++|...|+..... .|+..+ .....-.+.+.|+.+....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 4444444444444333 35667788999999999999999999999998754 333221 1112223457788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005130 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (713)
Q Consensus 184 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 263 (713)
+...+.... .-+...|-.-....-...++..|+.+-+...... +.++..|-.-...+...+++++|.-.|+.....
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 877776542 2234445444455556788999998888766431 223334444446778899999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005130 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI-DFAG-HAGKVEAAFEILQEAKNQGISVGIIS 341 (713)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~ 341 (713)
. +.+..+|.-|+..|...|++.+|.-+-++..+. ...+..+.+.+. ..|. ...--++|..+++...+.. +.-...
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~A 440 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPA 440 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHH
Confidence 4 456789999999999999999998887765443 112445554442 2222 2233468888888776653 223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005130 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (713)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (713)
.+.+...|...|..+.+..+++.-... .||...-+.|...+...+.+.+|++.|..... +.|+.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 778888899999999999999987754 79999999999999999999999999998877 45643
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=0.00049 Score=72.11 Aligned_cols=380 Identities=12% Similarity=0.093 Sum_probs=213.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHH
Q 005130 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (713)
Q Consensus 33 ~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 112 (713)
-.||+.++|++|+.+.+.-.... ..+..... -.....+.+..++|+..++...+.+..+...-...|.+.+++++|+
T Consensus 54 ValIq~~ky~~ALk~ikk~~~~~--~~~~~~fE-KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydeal 130 (652)
T KOG2376|consen 54 VALIQLDKYEDALKLIKKNGALL--VINSFFFE-KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEAL 130 (652)
T ss_pred hhhhhhhHHHHHHHHHHhcchhh--hcchhhHH-HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHH
Confidence 35779999999996665433211 11111111 1112346788999999999666666667777778899999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHH
Q 005130 113 QVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI---DGCAKAGQVAKAFGAYGIM 188 (713)
Q Consensus 113 ~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m 188 (713)
.+|+.+.+++.+- |...-..++.+-.. -.+ ++.+... ..| ..+|..+. ..+...|++.+|+++++..
T Consensus 131 diY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 131 DIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-QLLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-HHHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9999998876331 11111222221111 011 1222222 222 22333333 3455678888888888877
Q ss_pred HhC-------C------CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHH-HHHHHHHHHHHcCC----
Q 005130 189 RSK-------N------VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACANAGQ---- 249 (713)
Q Consensus 189 ~~~-------g------~~pd~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~-~~~~ll~~~~~~g~---- 249 (713)
... + +.-+..+ -..|.-.+-..|+.++|.+++.........-.|... .-|.|+. .....+
T Consensus 202 ~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva-~~~d~~~~d~ 280 (652)
T KOG2376|consen 202 LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVA-LSKDQNYFDG 280 (652)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhh-hccccccCch
Confidence 221 1 1111111 112344556678888888888877764322121111 1122221 111000
Q ss_pred ------------------------------------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCCH
Q 005130 250 ------------------------------------------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ--TGDW 285 (713)
Q Consensus 250 ------------------------------------------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~ 285 (713)
.+.+.++-... .+..|. ..+.+++....+ ...+
T Consensus 281 ~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~ 357 (652)
T KOG2376|consen 281 DLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKH 357 (652)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHH
Confidence 00000000000 011122 233333333322 2346
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005130 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSLMGACSNAKNWQK 357 (713)
Q Consensus 286 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~--------~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 357 (713)
..|.+++...-+....-.....-..+......|+++.|.+++. .+.+.+.. +.+..+++..|.+.++-+.
T Consensus 358 ~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 358 KKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred hhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCcc
Confidence 6777777777665433234566667777888999999999999 55554444 4566778888999888888
Q ss_pred HHHHHHHHHhC--CCCCCHHH----HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005130 358 ALELYEHMKSI--KLKPTVST----MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431 (713)
Q Consensus 358 A~~l~~~m~~~--~~~p~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 431 (713)
|..++.+.... .-.+.... |.-+...-.++|+-++|..+++++.+. .++|..+...++.+|++. +++.|..+
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 88888776531 00122233 333334445789999999999999985 367888999999998875 45666654
Q ss_pred H
Q 005130 432 L 432 (713)
Q Consensus 432 ~ 432 (713)
-
T Consensus 514 ~ 514 (652)
T KOG2376|consen 514 S 514 (652)
T ss_pred h
Confidence 4
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.63 E-value=4e-05 Score=70.93 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=78.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005130 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322 (713)
Q Consensus 243 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 322 (713)
.|...|++..|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+-|++....... +....|.....+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHH
Confidence 4444444444444444444443 333344444444444444444444444444433222 22333333334444444444
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005130 323 AFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 323 a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
|...|+....... ..-..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.|.....+.|++-.|...++...
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4444444443311 1112334444444444444444444444444331 1112233344444444444445544444444
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005130 402 SLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (713)
Q Consensus 402 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (713)
..+. ++..+.-..|..-...|+.+.+-++=
T Consensus 201 ~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 201 QRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred hccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3332 44444444444444444444444433
No 86
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=4.5e-08 Score=62.72 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005130 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (713)
Q Consensus 369 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (713)
|+.||..|||+||.+||+.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666665
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=2e-06 Score=86.35 Aligned_cols=253 Identities=13% Similarity=0.152 Sum_probs=118.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHH
Q 005130 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (713)
Q Consensus 31 ~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 110 (713)
......-.|++..|+.-.+ ..... .+........+.+.....|+.+.++.-.....+|.......+...+....+-+.
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHH
Confidence 3344455677777776555 22221 111223334455556666666666555544445555554444333333233333
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005130 111 AFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 111 A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
++.-+.........+ +..........+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333322222221 2222222233444556666666665432 245555556666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005130 190 SKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (713)
Q Consensus 190 ~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 265 (713)
+.+ .|. +...|..++.. ...+.+|..+|+++.. ...++..+.+.+..++...|++++|..++.+..+.+
T Consensus 159 ~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 159 QID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp CCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred hcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 542 232 22223333322 2246666666666543 234455555666666666666666666666555443
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 005130 266 KGTPEVYTIAINCCSQTGDW-EFACSVYDDMTKK 298 (713)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~ 298 (713)
+.++.+...+|.+....|+. +.+.+.+.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 33444544455555555554 4455555555543
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.61 E-value=0.0018 Score=70.23 Aligned_cols=221 Identities=13% Similarity=0.053 Sum_probs=130.5
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhCCChHHH
Q 005130 38 QGRISECIDLLEDMERK---GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 38 ~g~~~~A~~l~~~m~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 111 (713)
..+.++++...--+.++ +.+.++..+.-.+.-.....|++..+.+.|++..+ .....|+.+-..+...|.-..|
T Consensus 297 Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~A 376 (799)
T KOG4162|consen 297 RENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKA 376 (799)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHH
Confidence 44555555443333221 22335555555555556677888888888886542 3456788888888888888888
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHH-cCChhHHHHHHHHHHHC--C--CCCCHHHHHHHHHHHHHc----------
Q 005130 112 FQVLRLVQEAGLKA-DCKLYTTLITTCAK-SGKVDAMFEVFHEMVNA--G--IEPNVHTYGALIDGCAKA---------- 175 (713)
Q Consensus 112 ~~l~~~m~~~g~~p-d~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~--g--~~~~~~~~~~li~~~~~~---------- 175 (713)
..+++.-....-.| |...+-..-..|.+ .+.+++++..-.+.... + -......|-.+.-+|...
T Consensus 377 v~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR 456 (799)
T KOG4162|consen 377 VNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER 456 (799)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH
Confidence 88887655433224 33334333334433 35666666665555541 1 122334455555555432
Q ss_pred -CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005130 176 -GQVAKAFGAYGIMRSKNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (713)
Q Consensus 176 -g~~~~A~~l~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A 253 (713)
....++++.+++..+.+. .|+..-| +.--|+..++++.|++...+..+- +-..+...|..|.-.+...+++.+|
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l--~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALAL--NRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhhHHH
Confidence 124567777777766542 3333333 334466677788888888887764 2245667777777778888888888
Q ss_pred HHHHHHHHh
Q 005130 254 REVYKMIHK 262 (713)
Q Consensus 254 ~~~~~~m~~ 262 (713)
+.+.+....
T Consensus 533 l~vvd~al~ 541 (799)
T KOG4162|consen 533 LDVVDAALE 541 (799)
T ss_pred HHHHHHHHH
Confidence 888775543
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=0.00038 Score=83.28 Aligned_cols=332 Identities=9% Similarity=0.003 Sum_probs=210.7
Q ss_pred HhhHHHHHHHHHhhhCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHH
Q 005130 72 KSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KAD--CKLYTTLITTCAK 139 (713)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~------~pd--~~~~~~li~~~~~ 139 (713)
...|.++.+.++++.++. .+..........+...|++++|...+....+.-- .+. ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 345667777777776641 1222223344556678999999999987754311 111 1122233445667
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHhc
Q 005130 140 SGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNV---KPD--RVVFNALITACGQS 210 (713)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~~~~~li~~~~~~ 210 (713)
.|++++|...+++....-...+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999988763212222 3455666677889999999999988764210 111 23445566778889
Q ss_pred CCHHHHHHHHHHhhhCC--CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHh
Q 005130 211 GAVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQ 281 (713)
Q Consensus 211 g~~~~A~~~~~~m~~~~--~~~~--p-d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~~~~~li~~~~~ 281 (713)
|++++|...+.+..... .+.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999887764421 1111 1 23344555667778899999999988765421 111 23445556777889
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 005130 282 TGDWEFACSVYDDMTKKGVI-PDEVFL-----SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNA 352 (713)
Q Consensus 282 ~g~~~~A~~l~~~m~~~g~~-p~~~t~-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~ 352 (713)
.|++++|.+.+.+....... .....+ ...+..+...|+.+.|...+........... ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 99999999999887542111 011111 1122445568899999988776543221111 11245667778899
Q ss_pred CCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 005130 353 KNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (713)
Q Consensus 353 g~~~~A~~l~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (713)
|+.++|...+++.... |..++ ..+...+..+|...|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999987642 22222 245666777888999999999999998875
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.59 E-value=0.0002 Score=76.28 Aligned_cols=194 Identities=15% Similarity=0.178 Sum_probs=109.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005130 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (713)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 213 (713)
|.+......+.+|+.+++.+.... .-..-|..+.+-|+..|+++.|.++|.+. ..++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344445566666666666665442 12233555666677777777777766543 1245556667777777
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (713)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 293 (713)
+.|.++-.+.. +.......|-+-..-+-+.|++.+|.++|-.+...+ ..|..|-+.|..++.+++..
T Consensus 808 ~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~---------~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 808 EDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD---------KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch---------HHHHHHHhhCcchHHHHHHH
Confidence 77766655542 333444455554555556666666666654332211 23556666666666666655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (713)
Q Consensus 294 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 363 (713)
+-.... -..|...+..-|...|++..|..-|-+. .-|.+-+++|-..+.+++|.++-+
T Consensus 875 k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 875 KHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 432111 1234445555566677777776655432 235566777777777777766643
No 91
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=9.7e-08 Score=61.18 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005130 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (713)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 188 (713)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.53 E-value=0.0011 Score=71.69 Aligned_cols=391 Identities=15% Similarity=0.085 Sum_probs=249.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--C--C-CHHHHHHHHHHHHh-CCC
Q 005130 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--N--P-TLSTFNMLMSVCAS-SKD 107 (713)
Q Consensus 34 ~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~-~~~~~~~li~~~~~-~g~ 107 (713)
.|...|+++.+.+.|++...-- +.....++. +.-.+...|.-..|+.+.+.-. . | |+..+-..-..|.+ .+.
T Consensus 332 al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~-~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~ 409 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFS-FGEHERWYQ-LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKL 409 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHH-HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhh
Confidence 3458999999999999876532 222333333 2222334455677888887532 2 3 34444444455554 467
Q ss_pred hHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 005130 108 SEGAFQVLRLVQEA--GL--KADCKLYTTLITTCAKS-----------GKVDAMFEVFHEMVNAG-IEPNVHTYGALIDG 171 (713)
Q Consensus 108 ~~~A~~l~~~m~~~--g~--~pd~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~ 171 (713)
.++++..-.+.... +. ......|..+.-+|... ....++++.+++..+.+ -.|++..|-++ -
T Consensus 410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q 487 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--Q 487 (799)
T ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--H
Confidence 77777777766652 11 12344555555555432 12356778888887765 34444444443 5
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 005130 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~ 251 (713)
|+..++++.|.+..++..+.+-.-+...|..|.-.+.-.+++.+|+.+.+....+ ...|......-+..-...++.+
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E---~~~N~~l~~~~~~i~~~~~~~e 564 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE---FGDNHVLMDGKIHIELTFNDRE 564 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---hhhhhhhchhhhhhhhhcccHH
Confidence 7778899999999999998866778999999999999999999999999887654 1122222222222233355555
Q ss_pred HHHHHHHHHHhc---------------------C-------CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCC-
Q 005130 252 RAREVYKMIHKY---------------------N-------IKGTPEVYTIAINCCS-QTGDWEFACSVYDDMTKKGVI- 301 (713)
Q Consensus 252 ~A~~~~~~m~~~---------------------~-------~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~- 301 (713)
++......+... + ....+.++..+..-.. +.....-... |...-+.
T Consensus 565 ~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~----Lp~s~~~~ 640 (799)
T KOG4162|consen 565 EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK----LPSSTVLP 640 (799)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc----cCcccccC
Confidence 555444333210 0 0001122222111111 0000000000 2222122
Q ss_pred -CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005130 302 -PD------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374 (713)
Q Consensus 302 -p~------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 374 (713)
|+ ...|......+.+.+..++|...+.+..+.. +....+|......+...|..++|.+.|....... +-++
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv 718 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHV 718 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCc
Confidence 22 2345566778888999999998888877653 5567788888888999999999999999887653 3346
Q ss_pred HHHHHHHHHHHhCCChhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 375 STMNALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.+.+++...+.+.|+..-|.. ++.++.+.+ +-|...|-.+-..+.+.|+.++|.+.|....+.
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 789999999999999888888 999998854 337889999999999999999999999887764
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.52 E-value=6.2e-06 Score=82.83 Aligned_cols=128 Identities=17% Similarity=0.174 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005130 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC----SNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (713)
Q Consensus 304 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 379 (713)
.......+..|.+.++++.|.+.++.|.+.+ .|. +...|..++ .-...+.+|..+|+++.+. +.+++.+.|.
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng 206 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNG 206 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHH
Confidence 3344444445555555555555555544332 121 122222222 1122455555555555432 2345555555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 005130 380 LITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDV-EVGLMLLSQAKE 437 (713)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~ 437 (713)
+..++...|++++|.+++.+.... .| |..|...++.++...|+. +.+.+++.++.+
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555555666666666655554432 22 334455555555555555 445555555554
No 94
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.0011 Score=73.44 Aligned_cols=317 Identities=14% Similarity=0.173 Sum_probs=177.0
Q ss_pred CCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHH---------------------------h
Q 005130 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCK---------------------------S 73 (713)
Q Consensus 22 ~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~~l~~~~~---------------------------~ 73 (713)
..|+.+-.++-.++...+-..+-+++++++.-.+ .++.+.-+..+++-... .
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 4456667777788899999999999999987543 34444444443332222 2
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005130 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 153 (713)
.+-+++|+..|+... -+..+.+.||.- -++++.|.+.-++.. .+.+|+.+..+-.+.|.+.+|.+-|-+.
T Consensus 1061 ~~LyEEAF~ifkkf~-~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD-MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred hhHHHHHHHHHHHhc-ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 233344444443321 222333333321 123333333332221 2345666666666666666666555333
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC
Q 005130 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (713)
Q Consensus 154 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd 233 (713)
-|+..|.-+++...+.|.+++-.+.+...+++.-+|... +.||-+|++.+++.+..+++. -|+
T Consensus 1131 ------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---------gpN 1193 (1666)
T KOG0985|consen 1131 ------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---------GPN 1193 (1666)
T ss_pred ------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---------CCC
Confidence 255566666666666666666666666555554444433 346666666666665544431 355
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005130 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
+.....+.+-|...+.++.|.-+|..+ .-|..|...+...|+++.|..--++. .+..||.-+-.+
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFA 1258 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHH
Confidence 555566666666666666666665443 34566666677777777776655443 244577777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhC
Q 005130 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDG 387 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~ 387 (713)
|...+.+..| +|-..++-....-..-|+..|-..|.+++-..+++.-. |+. .....|+-|.-.|++-
T Consensus 1259 Cvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1259 CVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc
Confidence 7666555433 22222233334455667777888888888877776543 222 2234566665556543
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.47 E-value=0.00024 Score=69.28 Aligned_cols=302 Identities=11% Similarity=0.084 Sum_probs=166.9
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHH---HHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 005130 59 MDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM---SVCASSKDSEGAFQVLRLVQEAGLKADCKLY-TTLI 134 (713)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~-~~li 134 (713)
.+..-|.-+.+.+...|++.+|+..|.....-|+..|.++. ..|...|+...|+.-+.++++. +||-..- ..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34444555555555555556666555555444444444433 2355555555555555555543 4443211 1122
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC------------HH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005130 135 TTCAKSGKVDAMFEVFHEMVNAGIEPN------------VH--TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (713)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~------------~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 200 (713)
..+.+.|.++.|..-|+.+.+....-+ .. .....+..+.-.|+...|+.....+++.. +-|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 334555666666666665555421100 00 11223334445566666666666665542 2344445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH----HHHH--
Q 005130 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE----VYTI-- 274 (713)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~-- 274 (713)
..-..+|...|.+..|+.-+....+. -..+..++--+-..+...|+.+.++...++..+.+ |+-. .|..
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askL---s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKL---SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc---cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHH
Confidence 55556666666666665555444321 12233444444555566666666666666555543 2111 1111
Q ss_pred -----H--HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005130 275 -----A--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFL---SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344 (713)
Q Consensus 275 -----l--i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 344 (713)
+ +......++|.++++-.+...+.......+.+ ..+-.++...+.+.+|++.-.++.... +.|+.++.-
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~d 346 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHH
Confidence 1 12234567888888888888776544233333 344455667788899998888887753 345888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 005130 345 LMGACSNAKNWQKALELYEHMKSIK 369 (713)
Q Consensus 345 li~~~~~~g~~~~A~~l~~~m~~~~ 369 (713)
-..+|.-...++.|+.-|+...+.+
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8899998999999999999888753
No 96
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.47 E-value=0.0023 Score=66.60 Aligned_cols=387 Identities=12% Similarity=0.122 Sum_probs=207.1
Q ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005130 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (713)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 134 (713)
|.+......+++.+..+ .++++...++++. +-....|..-|..-.+.++++..+.+|.+.+..-+ +...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 77777777777777766 8999999999875 34567899999999999999999999998876533 455565555
Q ss_pred HHHHH-cCChhH----HHHHHHH-HHHCCCCCC-HHHHHHHHHH---------HHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 005130 135 TTCAK-SGKVDA----MFEVFHE-MVNAGIEPN-VHTYGALIDG---------CAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (713)
Q Consensus 135 ~~~~~-~g~~~~----A~~~~~~-m~~~g~~~~-~~~~~~li~~---------~~~~g~~~~A~~l~~~m~~~g~~pd~~ 198 (713)
+--.+ .++... ..+.|+- +.+.|.++- ...|+..+.. |..+.+++...++|.++...-+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 43322 233333 2233443 333454433 2346555543 344557778888888887542211111
Q ss_pred HHH------HHHHHH-------HhcCCHHHHHHHHHHhhhCCCCCCCCHHH---------------HHHHHHHHHHcC--
Q 005130 199 VFN------ALITAC-------GQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMKACANAG-- 248 (713)
Q Consensus 199 ~~~------~li~~~-------~~~g~~~~A~~~~~~m~~~~~~~~pd~~~---------------~~~ll~~~~~~g-- 248 (713)
.|+ .=|+.. -+...+..|.+++++......|+..+..+ |-.+|..--..+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 222 111111 12334666777776664432333322222 333333111111
Q ss_pred ----CH--HHHHHHHHHH-HhcCCCCCHHHHHHHHHH-------HHhcCC-------HHHHHHHHHHHHHCCCCCCHHHH
Q 005130 249 ----QV--DRAREVYKMI-HKYNIKGTPEVYTIAINC-------CSQTGD-------WEFACSVYDDMTKKGVIPDEVFL 307 (713)
Q Consensus 249 ----~~--~~A~~~~~~m-~~~~~~~~~~~~~~li~~-------~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~ 307 (713)
.+ ....-++++. .-.+.. +.+|----.. +...|+ -+++..+++.....-..-+..+|
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0111112211 111222 2222211111 111222 45666777665543333344445
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 005130 308 SALIDFAGHAG---KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITA 383 (713)
Q Consensus 308 ~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~ 383 (713)
..+.+.-...- ..+....+++++...-..--..+|..+++.-.+..-+..|+.+|.+..+.+..+ ++..++++|.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 44443211111 244555555555544222223466667777777777777777777777766555 66677777776
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 005130 384 LCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIG 452 (713)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~ 452 (713)
||. ++.+-|.++|+--.+. -+|. .--...++-+.+.++-..++.+|++....++.|| ..+|..+|+
T Consensus 412 ~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 664 5566777777653332 2333 3333556666777777777777777776655544 356666664
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=0.0022 Score=69.57 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=42.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHhCCChHHHHHH
Q 005130 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFNMLMSVCASSKDSEGAFQV 114 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l 114 (713)
+..|-+++|..+|++..+-+ ++-+++.+.|.+++|+++-+.-..- =..||.....-+-..++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 47888999999998887755 2345566677777777765532211 112444444444445566666555
Q ss_pred HH
Q 005130 115 LR 116 (713)
Q Consensus 115 ~~ 116 (713)
|+
T Consensus 881 yE 882 (1416)
T KOG3617|consen 881 YE 882 (1416)
T ss_pred HH
Confidence 54
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.40 E-value=0.0028 Score=62.18 Aligned_cols=310 Identities=15% Similarity=0.117 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HH
Q 005130 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG-AL 168 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~l 168 (713)
++.-.--+.+.+...|++..|+.-|...++- .|+ -.++-.-...|...|+...|+.-+....+. +||-..-. .-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 4444455677788889999999999988864 333 223444456788889999999999998876 67753221 22
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----HH------------HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC
Q 005130 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRV----VF------------NALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (713)
Q Consensus 169 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p 232 (713)
...+.+.|.++.|..-|+..++.. |+.. .+ ...+..+.-.|+...|+.....+... .+=
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi---~~W 187 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI---QPW 187 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc---Ccc
Confidence 345778999999999999998763 3211 11 11223334445555555555555432 112
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005130 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (713)
Q Consensus 233 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 312 (713)
|...+..-..+|...|++..|..-++...+.. ..+...+--+-..+...|+.+.++...++.++. .||....-.
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~--- 261 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP--- 261 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH---
Confidence 33344444555566666666555555444433 233344444455555556665555555555543 233221110
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HH---HHHHHHHHHHhC
Q 005130 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VS---TMNALITALCDG 387 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~---~~~~li~~~~~~ 387 (713)
.|-+ +.+..+.+..|. .....+++.++.+-.+...+. .|. .+ .+..+-.+|...
T Consensus 262 ~YKk---lkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 262 FYKK---LKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHH---HHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeeccccc
Confidence 1111 111111111111 122344555555555555443 233 22 233445566677
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 388 DQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 388 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
|++.+|++.-.+..+ +.|| ..++.--..||.-...++.|+.-|+...+.
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 888888888877776 4564 667777777777777888888888777664
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=0.0018 Score=67.34 Aligned_cols=373 Identities=14% Similarity=0.055 Sum_probs=202.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCC-HHHHHHHHHHHHhCCCh
Q 005130 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDS 108 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~ 108 (713)
-|..+..|+++.|+.+|-+.+... |.+.+.+..-...+.+.|++++|++--.+.. .|+ .-.|+-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 356678899999999999988766 5566666666667777788888876544322 333 45788888888888999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHcCCHHHHHH
Q 005130 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-----DGCAKAGQVAKAFG 183 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~ 183 (713)
++|+..|..-++.. +.+...++-+.+++... ..+.+.|. +...|..+. +.+...-.+..-++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 99999888877653 44566777777776111 01111111 111111111 11111111111111
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH-HHHH------------HHhhhCCCCCCCC----------HHHHHH
Q 005130 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRA-FDVL------------AEMNAEVHPVDPD----------HITIGA 239 (713)
Q Consensus 184 l~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A-~~~~------------~~m~~~~~~~~pd----------~~~~~~ 239 (713)
.+..-... +...+ ...++.+.......+.- ...- ..+... ....-| ..-...
T Consensus 154 ~~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNG-FPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HhhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCC-CCccchhHHHHHHHHhhhHHHH
Confidence 11100000 00000 00111111110000000 0000 000000 000001 112345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHH
Q 005130 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL-------SALID 312 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-------~~li~ 312 (713)
+.++.-+..+++.|.+-+....+.. .+..-++....+|...|.+.++...-....+.|.. ...-| ..+..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 6666777778888888888777665 34445566777788888877777666665555432 11222 22334
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCChh
Q 005130 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLP 391 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~ 391 (713)
+|.+.++++.++..|.+.....-.|+. ..+....+++....+...-. .|+.. -.-.-...+.+.|++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHH
Confidence 666677888888888876655444332 22334445555554444322 23321 1111245677888999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
+|+..|.+++... +-|...|+.-.-+|.+.|.+..|+.-.+..++.
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999888763 336778888888888899988888877777664
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.35 E-value=0.00022 Score=81.47 Aligned_cols=224 Identities=11% Similarity=0.163 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005130 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKA---DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 166 (713)
+...|-..+....+.++.+.|.+++++.+.. ++.- -.-.|.++++.-...|.-+...++|+++.+.. -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4567888888888899999999998887753 1111 12356677776666677788889999888752 1244678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH
Q 005130 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (713)
Q Consensus 167 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~ 246 (713)
.|...|.+...+++|.++|+.|.++ +......|...+..+.+..+-+.|..++.+....- +-.-......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 8889999999999999999999876 33567788888888888888888888888877531 111123445556667788
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC
Q 005130 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGK 319 (713)
Q Consensus 247 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~ 319 (713)
.|+.++++.+|+...... +--...|+..|+.-.+.|+.+.+..+|++....++.|-. +.|...+..=-..|+
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 899999999998877654 334578999999999999999999999998888776532 334444443333344
No 101
>PLN02789 farnesyltranstransferase
Probab=98.31 E-value=0.00073 Score=68.92 Aligned_cols=213 Identities=11% Similarity=0.011 Sum_probs=127.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005130 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 96 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
..+-..+...++.++|+.+...+++.. +-+..+|+..-.++...+ ++++++..++++.+... .+..+|+..--.+.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHH
Confidence 333344555667777888887777653 223445655555555666 46778888777776642 355566655545555
Q ss_pred cCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc---CC
Q 005130 175 AGQV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQ 249 (713)
Q Consensus 175 ~g~~--~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~---g~ 249 (713)
.|.. ++++.+++++.+.. +-|..+|+....++.+.|+++++++.++++.... ..|..+|+....++.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhcccccc
Confidence 5542 56677777777654 4466777777777777777788888777776531 33445555555444443 22
Q ss_pred H----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005130 250 V----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (713)
Q Consensus 250 ~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 316 (713)
. +++......+.... +.+...|+-+...+... +...+|.+.+.+....++. +...+..|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 2 34555555555544 44566777666666652 3334566666666554432 55566666666654
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.002 Score=61.95 Aligned_cols=187 Identities=13% Similarity=0.088 Sum_probs=122.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHH-HHHHHhCCC
Q 005130 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML-MSVCASSKD 107 (713)
Q Consensus 31 ~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l-i~~~~~~g~ 107 (713)
+.-.|++..++.+|++++..-.+.. |.+..-...+...+....++..|-..++++. .|...-|... ...+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 3447899999999999999888776 5566666666666667778888888888764 3444444322 344566788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005130 108 SEGAFQVLRLVQEAGLKADCKLYTTLITT--CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 185 (713)
+..|+.+...|... |+...-..-+.+ ....+++..+..+.++.... -+..+.+.......+.|+++.|.+-|
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHH
Confidence 88888888877642 221111111222 22457777788887777632 23444444444556788899998888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 005130 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (713)
Q Consensus 186 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (713)
....+-+--.....||.-+ +..+.|+.+.|++...++...
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh
Confidence 8877654344467777555 445667888888888877654
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.30 E-value=0.00061 Score=72.66 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=49.0
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005130 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (713)
+......+.+|+.+++.+..... -.--|..+.+.|+..|+++.|.++|.+.- .++-.|.+|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 33444555555555555444321 11224444555555555555555554331 13344555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (713)
Q Consensus 181 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 221 (713)
|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 555543332 222233333333333444455555555543
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=0.00051 Score=78.60 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH
Q 005130 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (713)
Q Consensus 196 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-----d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 270 (713)
....|-.-|.-..+.++.++|.+++++.... +.+ -.-.|.++++.-..-|.-+...++|++..+..- .-.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t---IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT---INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYT 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh---CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHH
Confidence 4566777777778888888888888887652 211 134677777777777777888888888877531 235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 005130 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGAC 349 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~ 349 (713)
+|..|...|.+.+.+++|.++|+.|.+.-- -....|...+..+.+..+-+.|..++.+..+.-.+ -.+....-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 788888888888889999999988887522 35677888888888888888888888887765211 1345566667777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 005130 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (713)
.++|+.+.++.+|+.....- +.-...|+.+|..-.++|+.+.+..+|++.+..++.|-. +.|.-.|..-...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 88999999999999887642 345678999999999999999999999999988877743 455555554444555333
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0033 Score=69.86 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005130 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (713)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 278 (713)
.|+.+..+-.+.|.+.+|.+-|-+. .|...|.-+++...+.|.+++-.+.+....+..-.| .+=+.||-+
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~A 1175 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFA 1175 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHH
Confidence 3444444444444444444444321 123344444555555555555444444443333222 122344444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005130 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (713)
Q Consensus 279 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 358 (713)
|++.++..+..+++. .||......+.+-|...+.++.|.-+|.. +.-|..|...+...|+++.|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 444444443333221 23444444444444444444444444432 22344444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (713)
Q Consensus 359 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (713)
..--++. .+..||-.+-.+|...+.+.-| +|....+..-..-..-++.-|...|-+++.+.+++
T Consensus 1240 VD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 4433222 2344454444444443332211 12211122223334445555555555555555443
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=0.00013 Score=76.35 Aligned_cols=216 Identities=14% Similarity=0.130 Sum_probs=143.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHhCCChH
Q 005130 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASSKDSE 109 (713)
Q Consensus 33 ~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 109 (713)
-.|+++|.+.+|.-.|+...+++ |.+......++..-...++-..|+..+.+ +.+.|....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 35678888999999999999887 77776666666666555555555555554 34556667777777788888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-----------HHHHHcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCC
Q 005130 110 GAFQVLRLVQEAGLKADCKLYTTLI-----------TTCAKSGKVDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQ 177 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~ 177 (713)
.|+..++.-++...+ |..+. ..+.....+....++|-++.. .+..+|..++..|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 888888766554311 00000 011111223344555555543 3434677777777777888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 005130 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREV 256 (713)
Q Consensus 178 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~ 256 (713)
+++|++.|+..+... +-|...||-|-..++...+.++|..-|.+..+ +.|. +.+...|.-.|...|.+++|.+.
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 888888888887663 44567788888888888888888888888765 3555 33444455567788888888777
Q ss_pred HHHH
Q 005130 257 YKMI 260 (713)
Q Consensus 257 ~~~m 260 (713)
|-..
T Consensus 521 lL~A 524 (579)
T KOG1125|consen 521 LLEA 524 (579)
T ss_pred HHHH
Confidence 7544
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=7.3e-05 Score=80.03 Aligned_cols=212 Identities=14% Similarity=0.066 Sum_probs=96.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005130 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (713)
Q Consensus 132 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 211 (713)
.+...+.+.|-...|..+|+++. .|.-.|.+|+..|+..+|..+..+-.++ +||...|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 34444555555555555555443 2444455555555555555555555442 455555555555554444
Q ss_pred CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005130 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (713)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 291 (713)
-+++|.++++..... +-..+.....+.++++++.+.|+.-.+.+ +....+|-....+..+.++++.|.+.
T Consensus 472 ~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 455555555443221 00011111122344555555554433332 22334444444444455555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 292 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
|..-....+. +...|+.+-.+|.+.++..+|...+.+..+.+ .-+..+|-..+....+.|.+++|.+.+.++.
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 5444433221 33345555555555555555555555544444 2233344444444444455555544444443
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.23 E-value=0.0021 Score=71.44 Aligned_cols=182 Identities=11% Similarity=0.050 Sum_probs=130.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHH
Q 005130 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (713)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 114 (713)
..+...|+..|-+..+.+ +.-......++.+++.-.+...|.+.|+... ..+..++......|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 445778888888877766 4445556667888877778888888888653 56777888999999999999999998
Q ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005130 115 LRLVQEAGL-KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193 (713)
Q Consensus 115 ~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 193 (713)
.-..-+... ..-...|....-.|...++...|...|+...+.. +.|...|..+..+|..+|++..|+++|.+....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 433322210 0011223334445667788999999999988775 347889999999999999999999999988765
Q ss_pred CCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhhh
Q 005130 194 KPDRVVFNA--LITACGQSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 194 ~pd~~~~~~--li~~~~~~g~~~~A~~~~~~m~~ 225 (713)
.|+ .+|.. ....-+..|.+.+|...+.....
T Consensus 626 rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 343 23332 22345667889999888877654
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00015 Score=75.75 Aligned_cols=221 Identities=13% Similarity=0.066 Sum_probs=148.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 005130 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (713)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (713)
+.+.|++.+|.-.|+....+. +-+...|.-|....+..++-..|+..+.+..+.+ +.+..+.-.|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 456677777777777666541 3345677777777777777777777777777766 556677777777788888777
Q ss_pred HHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005130 287 FACSVYDDMTKKGVI--------PDEVFLSALIDFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNWQK 357 (713)
Q Consensus 287 ~A~~l~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~ 357 (713)
.|++.++.-....++ ++..+-.. ........+.+..++|-++. ..+..+|+.+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888877776543211 00000000 11112222334445554444 34545777788888888888889999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 358 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
|.+.|+...... +-|...||-|-..++...+.++|+..|.+.++ ++|+- ....-|.-+|...|.+++|...|=..+
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999998887653 33567899999999998999999999998887 57764 344445668888899998888775543
No 110
>PLN02789 farnesyltranstransferase
Probab=98.21 E-value=0.0015 Score=66.69 Aligned_cols=209 Identities=7% Similarity=0.000 Sum_probs=133.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 005130 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA- 212 (713)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~- 212 (713)
..+...++.++|+.+.+++++.. +-+..+|+.--.++...| .+++++..++++.+.. +.+..+|+.-...+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445578889999999988763 224456776666666667 5789999998888764 3455667655545555555
Q ss_pred -HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCH---
Q 005130 213 -VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---GDW--- 285 (713)
Q Consensus 213 -~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~--- 285 (713)
.++++.+++.+... -+.|..+|+...-++.+.|+++++.+.++.+.+.+ +.+..+|+.....+.+. |..
T Consensus 123 ~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 123 AANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccccc
Confidence 26677788777653 23456778877777888888888888888888877 44556776665555443 222
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005130 286 -EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 286 -~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
++++....++....+. |...|+-+...+... +...+|...+.+..+.+ ..+......|++.|+.
T Consensus 199 ~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3556666566655443 556666666666552 33445666666655533 3345566666666664
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=0.00026 Score=76.03 Aligned_cols=215 Identities=12% Similarity=0.053 Sum_probs=148.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005130 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (713)
Q Consensus 96 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (713)
-.+...+...|-...|..+|+++. .|..+|.+|...|+..+|..+..+-.+. +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 345566777778888888887665 4556777788888888887777776663 67777788877777776
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005130 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (713)
Q Consensus 176 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~ 255 (713)
.-+++|.++++....+ .-..+.....+.+++.++.+.|+.-.... + --..+|-.+..+..+++++..|.+
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-p--lq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-P--LQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-c--cchhHHHhccHHHHHHhhhHHHHH
Confidence 7778888877765322 11122222334677888888777655431 2 234477777777778888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 256 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
.|....... +.+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|..-+....+.|.+++|++.+.++...
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 887776654 456678888888888888888888888888777633 4455666666677888888888888776543
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.20 E-value=0.00023 Score=70.05 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=29.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 275 AINCCSQTGDWEFACSVYDDMTKKGV-IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 275 li~~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
+...|.+.|++++|+..|+....... .| ....+..+..++.+.|+.++|..+++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33445555555555555555554321 11 234455555555556666666555555543
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.20 E-value=0.00023 Score=70.06 Aligned_cols=187 Identities=10% Similarity=-0.017 Sum_probs=126.7
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--H
Q 005130 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--H 163 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~ 163 (713)
......+..+...+...|+++.|...|+.+.... +.+. .++..+..++.+.|++++|...|+++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677778888889999999999999887753 2222 46677888888999999999999998876422111 2
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH
Q 005130 164 TYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (713)
Q Consensus 164 ~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~ 234 (713)
++..+..++.+. |+.++|.+.|+.+... .|+. ..+..+..... ... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~---------- 166 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA---------- 166 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH----------
Confidence 444455555544 6788888888888766 3332 22222211100 000 000
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 235 ITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
.....+...|.+.|++++|...|+...+... +.....+..+..++.+.|++++|...++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112456678899999999999998876532 234678889999999999999999998888765
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0017 Score=61.59 Aligned_cols=139 Identities=12% Similarity=0.133 Sum_probs=74.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005130 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193 (713)
Q Consensus 114 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 193 (713)
+.+.+.......+......-...|...+++++|++...... +......=+..+.+..+++-|.+.+++|.+-.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 33444444334443444444455666666666666655421 22223233344555666666666666666442
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005130 194 KPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (713)
Q Consensus 194 ~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 264 (713)
+..|.+.|..++.+ .+.+.+|.-+|++|.. ...|+..+.+-...++...|++++|..+++......
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 44555555555443 2446666666666653 245566666666666666666666666666665554
No 115
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.006 Score=63.67 Aligned_cols=353 Identities=12% Similarity=0.088 Sum_probs=192.4
Q ss_pred HHHhhHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhH
Q 005130 70 VCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDA 145 (713)
Q Consensus 70 ~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~ 145 (713)
...+.|+++.|+.+|-. +.++|.+.|..-..+|+..|++++|++=-.+-.+. .|+ ...|+....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 45567889999999875 34678888998899999999999988766666554 555 6688888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHH--HHhCCCCCCH--------HHHHHHHHHHHhc----
Q 005130 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF-GAYGI--MRSKNVKPDR--------VVFNALITACGQS---- 210 (713)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~--m~~~g~~pd~--------~~~~~li~~~~~~---- 210 (713)
|+.-|.+-.+.. +.|...++-+..++ ..+.+. +.|.. |. .++.-++ ..|..++..+-+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~-~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFTKPYFH-EKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhccCcHHH-HHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 999999887764 33566677777776 111111 11110 00 0001111 1122222222111
Q ss_pred ---CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc-CCHH----HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHh
Q 005130 211 ---GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA-GQVD----RAREVYKMIHK-YNIKGTPEVYTIAINCCSQ 281 (713)
Q Consensus 211 ---g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~-g~~~----~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~ 281 (713)
.+.+...+....+... ... .+...-...... ..+. .......++.+ ....--..-...+.++..+
T Consensus 163 ~~~l~d~r~m~a~~~l~~~----~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGV----DEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred hcccccHHHHHHHHHHhcC----ccc--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 0011111111111000 000 000000000000 0000 00000000000 0000001224567777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C----HHHHHHHHHHHHhcCCH
Q 005130 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--G----IISYSSLMGACSNAKNW 355 (713)
Q Consensus 282 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~----~~~~~~li~~~~~~g~~ 355 (713)
..+++.|++-+....+.. -+..-++....+|...|.+.+....-....+.|-.. + ...+..+..+|.+.+++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 888999999998888775 255556666677888888777766666555554211 0 11222344477778889
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHH
Q 005130 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSILLVACERKDDVEVGLMLLSQ 434 (713)
Q Consensus 356 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~ 434 (713)
+.|...|.+.....-.||.. .+....+++++......- +.|.... ...=.+.+.+.|++..|+..+.+
T Consensus 315 ~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999998876543343332 223445555555544433 3454321 22225778899999999999999
Q ss_pred HHHCCCCCCH-HHHHHHH
Q 005130 435 AKEDGVIPNL-VMFKCII 451 (713)
Q Consensus 435 m~~~g~~p~~-~~~~~li 451 (713)
+++.. |+. ..|+---
T Consensus 384 AIkr~--P~Da~lYsNRA 399 (539)
T KOG0548|consen 384 AIKRD--PEDARLYSNRA 399 (539)
T ss_pred HHhcC--CchhHHHHHHH
Confidence 99864 544 4444433
No 116
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.14 E-value=0.016 Score=60.48 Aligned_cols=424 Identities=11% Similarity=0.117 Sum_probs=260.3
Q ss_pred chhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHHHH
Q 005130 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (713)
Q Consensus 26 ~~~~~~~~~L~---~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~ 100 (713)
.-++.+|..|+ +..-++++.+.++++... +|....+....++.-...++++....+|.+.. .-++..|...|+
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 56788999998 456899999999999864 46665555555666666788899999987643 456777887776
Q ss_pred HHHh-CCChHH----HHHHHHHH-HHcCCCCCH-HHHHHHHHH---------HHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 005130 101 VCAS-SKDSEG----AFQVLRLV-QEAGLKADC-KLYTTLITT---------CAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (713)
Q Consensus 101 ~~~~-~g~~~~----A~~l~~~m-~~~g~~pd~-~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 164 (713)
--.+ .++... -.+.|+.. .+.|+.+-. ..|+.-+.. +....+++..+++|.++....+.-=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 5433 233322 23344433 344544322 234444433 3344567778888888876432211122
Q ss_pred HH------HHHHHH-------HHcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHhcCC--
Q 005130 165 YG------ALIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSGA-- 212 (713)
Q Consensus 165 ~~------~li~~~-------~~~g~~~~A~~l~~~m~~--~g~~pd~~~---------------~~~li~~~~~~g~-- 212 (713)
|+ .=|+-. -+...+..|.++++++.. +|+..+..+ |-.+|.-=-.++.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 22 111111 123456778888877753 343222222 4444433221111
Q ss_pred ----H--HHHHHHHHHhhhCCCCCCCCHHHH-HHHH----HHHHHcCC-------HHHHHHHHHHHHhcCCCCCHHHHHH
Q 005130 213 ----V--DRAFDVLAEMNAEVHPVDPDHITI-GALM----KACANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTI 274 (713)
Q Consensus 213 ----~--~~A~~~~~~m~~~~~~~~pd~~~~-~~ll----~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~ 274 (713)
. ....-.+++...- .+..|++.-. ...+ +.+...|+ -+++..+++.....-..-+...|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1111122222211 1334443221 1111 23333443 5778888887666544444556655
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 005130 275 AINCCSQT---GDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (713)
Q Consensus 275 li~~~~~~---g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~ 349 (713)
+.+.--.. ...+.....+++++.. ...|+ .+|...+....+..-+..|..+|.+..+.+..+ ++.++++++..|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 55432222 2367777788877664 33443 568888888888999999999999999987776 889999999977
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 005130 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (713)
| .++.+-|.++|+--.+. +.-+..--+..+.-+...++-..|..+|++....++.|+. ..|..+|.--+.-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 6 56788999999864433 1223444466777788889999999999999988777764 689999999999999999
Q ss_pred HHHHHHHHHHC-C--CCCCHHHHHHHHHHHH
Q 005130 428 GLMLLSQAKED-G--VIPNLVMFKCIIGMCS 455 (713)
Q Consensus 428 a~~~~~~m~~~-g--~~p~~~~~~~li~~~~ 455 (713)
..++-+++... . ..|..-+-..+++.|+
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~ 521 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYG 521 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHh
Confidence 99998887653 2 3333334445555543
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.014 Score=60.54 Aligned_cols=218 Identities=13% Similarity=0.050 Sum_probs=144.2
Q ss_pred HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005130 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (713)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (713)
+.++...-+.+......-.|+...+...+.+......-..+...+.+..+. .....+--..-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHH
Confidence 444454555554433233455555555555444333333333333332221 11233333344556778889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005130 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (713)
Q Consensus 293 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 371 (713)
+.+...-.. |...+....+.+...++.++|.+.++.+.... |+ ....-.+..+|.+.|++.+|..+++...... +
T Consensus 330 ~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p 405 (484)
T COG4783 330 QPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-P 405 (484)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-C
Confidence 998776443 66677777788889999999999999888764 43 6667778888999999999999888876543 5
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHH
Q 005130 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED--GVIPNLVMFKC 449 (713)
Q Consensus 372 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ 449 (713)
-|...|..|..+|...|+..+|....-+ ++...|+++.|...+....+. ...|+-.-+..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~da 467 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADA 467 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 5788899999999999988888766544 355678888888888877764 33566666666
Q ss_pred HHHHHH
Q 005130 450 IIGMCS 455 (713)
Q Consensus 450 li~~~~ 455 (713)
.|+...
T Consensus 468 ri~~~~ 473 (484)
T COG4783 468 RIDQLR 473 (484)
T ss_pred HHHHHH
Confidence 666543
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0029 Score=60.86 Aligned_cols=187 Identities=13% Similarity=0.076 Sum_probs=86.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHH
Q 005130 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCAKAGQVAK 180 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~ 180 (713)
+.+..++..|++++..-.++. +.+....+.|..+|....++..|-..|+++... .|...-|.. -...+-+.+.+..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHH
Confidence 344445555555555544442 224444555555555555566666666555543 233322221 1223334555556
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005130 181 AFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (713)
Q Consensus 181 A~~l~~~m~~~g~~pd~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (713)
|+++...|... |+...-..-+.+ ....+++..+..+.++...+ .+..+.+.......+.|+++.|.+-|+
T Consensus 97 ALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 97 ALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHHHHHHHHH
Confidence 66665555432 111111111111 22345555555555554321 122233333334455666666666666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005130 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (713)
Q Consensus 259 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 300 (713)
...+.+--.....||.-+. ..+.|+++.|++...++.+.|+
T Consensus 169 aAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 5555432223344544432 3344556666666666655554
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.08 E-value=0.00073 Score=64.05 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhCCC--hhHHHHHHHHHHHCCCCC-CHHHHH
Q 005130 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQ--LPKTMEVLSDMKSLGLCP-NTITYS 413 (713)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~l~~~m~~~g~~p-~~~t~~ 413 (713)
|...|..|...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+. .| +...+.
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~ 148 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALM 148 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHH
Confidence 34444444444444444444444444444332 12333344333332 33333 24444444444442 22 233333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 414 ILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
.+..++...|++++|...++++.+
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444444444444443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00079 Score=63.93 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=79.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005130 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (713)
Q Consensus 100 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (713)
..+...|+-+.+..+....... .+.|.......+....+.|++..|...|.+..... ++|..+|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3444445555444444443221 12334444445555555566666666665555433 345555666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005130 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (713)
Q Consensus 180 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~ 259 (713)
.|..-|.+..+.- .-+...+|.|.-.+.-.|+.+.|..++...... -..|..+-..+.-.....|++++|.++-..
T Consensus 152 ~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 152 EARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666555555441 223444555555555556666666655555432 122444555555555556666666555543
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6e-06 Score=53.59 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005130 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (713)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.07 E-value=0.00096 Score=63.24 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHH
Q 005130 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAFE 325 (713)
Q Consensus 249 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~--~~~a~~ 325 (713)
+.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444444333 334444555544555555555555555444444322 33333333333 233333 244444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005130 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 326 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
++++..+.+ +.+..++..+...+.+.|++++|...|+++.+
T Consensus 132 ~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444443 22334444444444444444444444444443
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.04 E-value=0.001 Score=74.84 Aligned_cols=236 Identities=10% Similarity=0.093 Sum_probs=159.2
Q ss_pred CHHHHHHHHHHHHHcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005130 126 DCKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (713)
Q Consensus 126 d~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 204 (713)
++...+.+=.+.+..|..++| .+++.+..+ ++....+-....+++.-...... ....+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 344444444455566666665 456665553 23333333333333322222222 2355688888899
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 005130 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (713)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 283 (713)
....+.|.+++|..+++.... +.|| ......+...+.+.+++++|...++.....+ +.+......+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Confidence 999999999999999999875 3566 4566677888999999999999999998876 667788888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 363 (713)
++++|..+|++....+.. +..++..+..++...|+.++|...|....+.- .+...-|+.++ +++..-..+++
T Consensus 169 ~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 169 QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHH
Confidence 999999999999985443 57788888899999999999999999887763 34455565554 23344445555
Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHhC
Q 005130 364 HMKSI----KLKPTVSTMNALITALCDG 387 (713)
Q Consensus 364 ~m~~~----~~~p~~~~~~~li~~~~~~ 387 (713)
.+.-. |..-.+.+...+|.-|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 55422 2222334455555555543
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.0015 Score=62.02 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005130 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 315 (713)
.....+....+.|++..|...|++..... ++|...|+.+.-+|.+.|++++|..-|.+..+.... +...++.+.-.+.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHH
Confidence 33334444444455555555554444433 444444555555555555555555444444443222 2233344444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005130 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 362 (713)
-.|+++.|..++......+ .-|..+-..|.-.....|++++|.++-
T Consensus 180 L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 4445555554444444332 223344444444444455555544443
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.0014 Score=70.97 Aligned_cols=60 Identities=15% Similarity=0.313 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHH--HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005130 89 NPTLSTFNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (713)
Q Consensus 89 ~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (713)
+-|..|--.+++ .|...|+.+.|.+-.+.++ ...+|..+.++|.+..++|-|.-.+..|.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 445555555543 2455566665555544332 34456666666666666666555555553
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.95 E-value=0.0039 Score=71.08 Aligned_cols=140 Identities=11% Similarity=0.021 Sum_probs=94.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHH
Q 005130 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (713)
Q Consensus 33 ~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 112 (713)
+.+...+++++|+++.+...+.. |....++...+-++.+.++.++|..+ .++.......++....
T Consensus 39 ~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 39 DAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVE 103 (906)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccchhHHH
Confidence 33448999999999999777765 55544444444455555554444333 4444444555554444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005130 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 113 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
.+...|... .-+..++..+..+|-+.|+.++|..+|+++.+.. +-|..+.|-+...|+.. ++++|.+++.+....
T Consensus 104 ~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 104 HICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 455555553 3344577778888888888888888888888876 44777888888888888 888888888777643
No 127
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.95 E-value=0.0099 Score=66.36 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCC---CH--HHHHHHHHHHHhCCChHHHHH
Q 005130 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---TL--STFNMLMSVCASSKDSEGAFQ 113 (713)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--~~~~~li~~~~~~g~~~~A~~ 113 (713)
.+...|.+.|+...+.+ +.+......+...+.....++.|....-...+. -. ..|-...-.+.+.++...|..
T Consensus 506 ~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 506 DDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred HHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHH
Confidence 35667888888877665 445555556667777777777777663322211 11 122233334666777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 005130 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA--LIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 114 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~ 189 (713)
-|+...+.. +.|...|..+..+|..+|++..|.++|++.... .|+. +|.. ....-+..|.+.+|+..+....
T Consensus 584 ~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 584 EFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777777654 446667778888888888888888888776654 2322 2221 1223345667777776666554
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.0044 Score=70.63 Aligned_cols=239 Identities=8% Similarity=0.034 Sum_probs=133.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005130 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (713)
+.+...|..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 456677888888888888888888888866654 3432 2333333356666665555444 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc
Q 005130 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~ 247 (713)
+++......++.-+..++..|... .-+...+..+..+|-+.|+.++|..+++++..-. +-|..+.|.+...|+..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh
Confidence 223333333343333333444433 2244466677777777777888877777777532 34566777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005130 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (713)
Q Consensus 248 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 327 (713)
++++|..++...... |...+++..+.++|.++....+. |...+..++
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~---------------- 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE---------------- 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------
Confidence 777777777665543 44555666777777776665332 211211111
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005130 328 QEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (713)
Q Consensus 328 ~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 385 (713)
+.+... |..--+.++-.|-..|-+..+++++..+++.+.+.. +.|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 111111 112223344445555566666666666666665543 234444555555554
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.92 E-value=0.0035 Score=64.74 Aligned_cols=114 Identities=14% Similarity=0.038 Sum_probs=55.7
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005130 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
...|.+++|+..++.+... .+.|..-.....+.+.+.++.++|.+.++.+.... +.....+-.+..+|.+.|++.+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 3445555555555555432 12223333334455555555555555555555443 2224444455555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005130 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (713)
Q Consensus 288 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 326 (713)
|..+++........ |...|..|..+|...|+..++...
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHH
Confidence 55555555444332 445555555555555555444433
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.92 E-value=0.00058 Score=61.12 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005130 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
+..+...+...|++++|...|+...... +.+..+|..+..++.+.|++++|...|+...... +.+..++..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344455556666666666666665543 3355556666666666666666666666666543 2355556666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 005130 175 AGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~ 191 (713)
.|++++|+..|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.92 E-value=0.00066 Score=60.80 Aligned_cols=89 Identities=11% Similarity=-0.008 Sum_probs=37.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChh
Q 005130 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 391 (713)
.++...|++++|...|....... +.+...+..+..++.+.|++++|...|+...+.. +.+...+..+..++...|+.+
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 33344444444444444444332 2233444444444444444444444444444322 223334444444444444444
Q ss_pred HHHHHHHHHHH
Q 005130 392 KTMEVLSDMKS 402 (713)
Q Consensus 392 ~A~~l~~~m~~ 402 (713)
+|+..|+...+
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.91 E-value=0.0052 Score=69.31 Aligned_cols=234 Identities=12% Similarity=0.102 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHhCCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005130 92 LSTFNMLMSVCASSKDSEGAF-QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
+.....+=.+.+..|..++|- +++.++. .++...+......+++.-....... +..+...+-.|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHH
Confidence 333444444566666666653 3333322 3444444444444444333333332 3557889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcC
Q 005130 171 GCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAG 248 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g 248 (713)
...+.|.+++|..+++...+. .|| ......+...+.+.+++++|+..+++.... .|+ ......+..++.+.|
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~----~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG----GSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999887 455 556777889999999999999999998863 454 556677778899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (713)
Q Consensus 249 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 328 (713)
++++|..+|+++...+ +.+..++..+...+...|+.++|...|+......- |-...|+..+ +++..-...++
T Consensus 169 ~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 169 QSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred chHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHHH------HHHHHHHHHHH
Confidence 9999999999999843 55688999999999999999999999999876522 3334444443 23333444555
Q ss_pred HHHHC----CCCCCHHHHHHHHHHHHhc
Q 005130 329 EAKNQ----GISVGIISYSSLMGACSNA 352 (713)
Q Consensus 329 ~m~~~----g~~~~~~~~~~li~~~~~~ 352 (713)
.+.-. |....+.+....|.-|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 54333 3333445555555555444
No 133
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=1.6e-05 Score=51.24 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 005130 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (713)
+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0068 Score=57.71 Aligned_cols=153 Identities=14% Similarity=0.071 Sum_probs=88.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 005130 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-- 351 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 351 (713)
.-...|++.|++++|++...... +......=+..+.+..+.+.|.+.++.|.+-. +..+.+.|..++.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la 183 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLA 183 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHh
Confidence 33445666666666666655411 12222222333445566666666666666542 34555555555443
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-H
Q 005130 352 --AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV-G 428 (713)
Q Consensus 352 --~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~-a 428 (713)
.+.+.+|.-+|++|.++ ..|+..+.|-+..++...|++++|..++++..... .-+..|...++.+-...|...+ -
T Consensus 184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHH
Confidence 34567777777777653 35777777777777777777777777777776653 2345566666655556665543 3
Q ss_pred HHHHHHHHH
Q 005130 429 LMLLSQAKE 437 (713)
Q Consensus 429 ~~~~~~m~~ 437 (713)
.+.+.+++.
T Consensus 262 ~r~l~QLk~ 270 (299)
T KOG3081|consen 262 ERNLSQLKL 270 (299)
T ss_pred HHHHHHHHh
Confidence 344555554
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.89 E-value=2.3e-05 Score=50.79 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 005130 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 196 (713)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.82 E-value=0.00094 Score=59.13 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=37.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChh
Q 005130 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 391 (713)
..+...|++++|...++.+...+ +.+...+..+...|.+.|++++|...|+...+.. +.+...+..+...|...|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHH
Confidence 33444444444444444443332 2233444444444444444444444444443322 223333334444444444444
Q ss_pred HHHHHHHHHHH
Q 005130 392 KTMEVLSDMKS 402 (713)
Q Consensus 392 ~A~~l~~~m~~ 402 (713)
+|++.|++..+
T Consensus 103 ~A~~~~~~al~ 113 (135)
T TIGR02552 103 SALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.79 E-value=0.11 Score=57.99 Aligned_cols=224 Identities=10% Similarity=0.007 Sum_probs=133.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhCCChHHH
Q 005130 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 111 (713)
++..+++..|++...++.++- |+....-.+-.-...+.|+.++|...++.. ...|..|...+-..|...++.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 457788888888888888875 433222222222345667788888777653 234777888888888888888999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHH
Q 005130 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------VAKA 181 (713)
Q Consensus 112 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A 181 (713)
..++++..+. -|+......+..+|.+.+++.+-.++--+|.+. .+.+.+.+=++++.+.+.-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 8888888765 566777777788888877765543333333332 23345555555665554321 3456
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005130 182 FGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (713)
Q Consensus 182 ~~l~~~m~~~g-~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m 260 (713)
.+.++.+.+.+ -.-+..-...-...+-..|.+++|.+++..-.... -...+...-+--++.+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66666666553 11122222222334456677888888874322221 12233334445566667777777766666666
Q ss_pred HhcC
Q 005130 261 HKYN 264 (713)
Q Consensus 261 ~~~~ 264 (713)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 6655
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.78 E-value=3.6e-05 Score=49.53 Aligned_cols=33 Identities=45% Similarity=0.794 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005130 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (713)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 195 (713)
.+|+++|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355566666666666666666666665555554
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.70 E-value=0.0017 Score=57.41 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005130 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 208 (713)
....+...+...|++++|.+.|+.+...+ +.+...|..+...|.+.|++++|..+|++....+ +.+...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34444455555555666665555555443 2244555555555555566666665555554442 334444555555555
Q ss_pred hcCCHHHHHHHHHHhhh
Q 005130 209 QSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 209 ~~g~~~~A~~~~~~m~~ 225 (713)
..|++++|.+.|+....
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55666666665555543
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=4.4e-05 Score=47.86 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 005130 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (713)
+||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 141
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.64 E-value=0.00076 Score=70.51 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005130 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (713)
Q Consensus 303 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 380 (713)
+...+..++..+....+++.+..++...... ....-..|..++|..|.+.|..+++..++..=...|+-||..|+|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555555555555555555555555443 11122233345566666666666666665555555666666666666
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005130 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (713)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (713)
|..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666665555555555555555555444443
No 142
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.59 E-value=0.0012 Score=68.95 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 005130 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (713)
Q Consensus 194 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 273 (713)
+.+.+....+++.+....+++.+..++.+.........--..|..+++..|.+.|..+.+..+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33445555555555555555666665555544322221222334466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005130 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 317 (713)
.||+.+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666655555544555555555555443
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.57 E-value=0.22 Score=55.58 Aligned_cols=222 Identities=12% Similarity=0.057 Sum_probs=154.4
Q ss_pred hHHHHHHHHHhhhCC--CCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005130 74 QKAIKEAFRFFKLVP--NPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~--~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 149 (713)
.+++..|+.....+. .||. .|...+.+ ..+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 456677777666543 3554 34445554 56889999999999888776644 888999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHH
Q 005130 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA----------VDRAFDV 219 (713)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~----------~~~A~~~ 219 (713)
|+..... .|+......+..+|++-+++.+-.++=-+|-+. ++-+.+.|-++++.+.+.-. ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9999876 677888888999999988876544444444332 34456666677776665421 3456666
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 220 ~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
++.+.... |---+..-.-.-+......|++++|.+++. ...+.-...+...-+.-+..+...++|.+..++-.++...
T Consensus 177 ~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 177 VQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 77776653 322222222233445677889999999994 4444444445566677788888889999888888888887
Q ss_pred CCC
Q 005130 299 GVI 301 (713)
Q Consensus 299 g~~ 301 (713)
|..
T Consensus 256 ~~D 258 (932)
T KOG2053|consen 256 GND 258 (932)
T ss_pred CCc
Confidence 653
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.56 E-value=0.0042 Score=64.76 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005130 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 353 (713)
+++..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|.+++.+..+.. +.+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555666666666655553 332 2234444444555555555555554332 223444444444455555
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005130 354 NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDM 400 (713)
Q Consensus 354 ~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (713)
+.+.|..+.+++.+. .|+ ..+|..|..+|.+.|++++|+..++.+
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555443 232 235555555555555555555544443
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.51 E-value=0.0041 Score=64.83 Aligned_cols=124 Identities=16% Similarity=0.117 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 005130 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~ 244 (713)
..+|+..+...++++.|+.+|+++.+.. |+. ...+++.+...++-.+|.+++.+.... .+.|......-...|
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~---~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE---NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 3344555555666777777777766552 432 233555665666666666666666542 122344444444556
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
.+.++++.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666666666543 3344566666666666666666666666554
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.50 E-value=0.0001 Score=46.16 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005130 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 192 (713)
+||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.50 E-value=0.0015 Score=53.56 Aligned_cols=76 Identities=17% Similarity=0.400 Sum_probs=44.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005130 97 MLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSG--------KVDAMFEVFHEMVNAGIEPNVHTYGA 167 (713)
Q Consensus 97 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (713)
..|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555556777777777777777777 677777777776665542 12234445555555555555555555
Q ss_pred HHHHH
Q 005130 168 LIDGC 172 (713)
Q Consensus 168 li~~~ 172 (713)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55444
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.49 E-value=0.0063 Score=54.60 Aligned_cols=124 Identities=16% Similarity=0.159 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH
Q 005130 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR--VVFNALI 204 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~~li 204 (713)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33444444 3566666666666666542 112 122223445566666666666666666665422211 1233345
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005130 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (713)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~ 259 (713)
..+...|++++|+..++..... ......+....++|.+.|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~----~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE----AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc----chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5566666666666666543221 22233444555666666666666666653
No 149
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=97.49 E-value=1.7e-05 Score=67.32 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=51.7
Q ss_pred CcccCCCCeeeccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccC----Cc--------cceeccCCchh-hhh
Q 005130 569 CVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPV----EK--------TQIMSVGGEKT-IDI 635 (713)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~----~~--------~~~~~~~~~~~-~~~ 635 (713)
||+|++.+.|+.+|++||+...+ .++...||+|++..++|+ ++ +..+++||||+ +.+
T Consensus 2 ~~~w~~~h~F~sgd~shp~~~~~----------~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiaf 71 (116)
T PF14432_consen 2 GCSWIEVHSFVSGDRSHPQSELI----------NKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAF 71 (116)
T ss_pred CCCccceEEEEeCCCcCccHHHH----------HHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHh
Confidence 78999999999999999998333 345577999999999887 12 34789999998 222
Q ss_pred hhhhhHHHHHHHHHh
Q 005130 636 AERTTQAIAALLRRL 650 (713)
Q Consensus 636 ~~~~~~~v~~~l~~~ 650 (713)
. -+..+|++||+|+
T Consensus 72 g-li~~~vvkn~~Rv 85 (116)
T PF14432_consen 72 G-LINTRVVKNLKRV 85 (116)
T ss_pred c-ccceeEEecCCcc
Confidence 1 1222777777443
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.1 Score=49.65 Aligned_cols=116 Identities=10% Similarity=0.117 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 005130 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (713)
Q Consensus 318 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 397 (713)
|.+++|.++++.+.+.+ +.|..++-.=+.+.-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.+
T Consensus 100 ~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 34444444444444333 223333333333333333333444433333322 1345555555555555555555555555
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 005130 398 SDMKSLGLCP-NTITYSILLVACER---KDDVEVGLMLLSQAKE 437 (713)
Q Consensus 398 ~~m~~~g~~p-~~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~ 437 (713)
++|.- +.| ++..|..+...+.- ..+++-++++|.+..+
T Consensus 178 EE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 178 EELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55544 234 33333333333322 2234456666666665
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.1 Score=49.53 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005130 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (713)
Q Consensus 283 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 362 (713)
|++++|.++++.+.+.+.. |.+++-.=+...-..|+--+|++-+....+. +..|...|.-|.+.|...|++++|.-.+
T Consensus 100 ~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3344444444444433321 3333333333333333333343333333332 2334444444444444444444444444
Q ss_pred HHHH
Q 005130 363 EHMK 366 (713)
Q Consensus 363 ~~m~ 366 (713)
+++.
T Consensus 178 EE~l 181 (289)
T KOG3060|consen 178 EELL 181 (289)
T ss_pred HHHH
Confidence 4443
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.44 E-value=0.007 Score=54.31 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=7.8
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 005130 344 SLMGACSNAKNWQKALELY 362 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~ 362 (713)
...+.|.+.|+.++|...|
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 3334444444444444443
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.39 E-value=0.0033 Score=51.62 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 005130 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVV 199 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~pd~~~ 199 (713)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 899999999999887753 34567888999998889999999
Q ss_pred HHHHHHHHHh
Q 005130 200 FNALITACGQ 209 (713)
Q Consensus 200 ~~~li~~~~~ 209 (713)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 154
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.065 Score=57.66 Aligned_cols=333 Identities=12% Similarity=0.087 Sum_probs=161.1
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCC--------CHHHHHHHHHHHHHcCChhHHH
Q 005130 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE-AGLKA--------DCKLYTTLITTCAKSGKVDAMF 147 (713)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p--------d~~~~~~li~~~~~~g~~~~A~ 147 (713)
+++|.++.+. +|.+..|..+.......-.++.|+..|-+... .|++. +...-.+=|.+ --|.+++|.
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhh
Confidence 5666666554 56677888888777777777788777755432 12210 00011111222 248889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 005130 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (713)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (713)
++|-+|-++. ..|..+.+.|++-.+.++++.--.. .-..-...|+.+...++....+++|.+.|..-...
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9988886542 3466677777777766665432100 00011345666766666666677777666543210
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005130 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (713)
Q Consensus 227 ~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 306 (713)
...+.++.+..++++-+.+-..+.+ +....-.|..++...|.-++|.+.|-+-- . |
T Consensus 826 -----------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p---- 881 (1189)
T KOG2041|consen 826 -----------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P---- 881 (1189)
T ss_pred -----------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c----
Confidence 1234444444444444433333322 22334444555555555555554443211 0 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--------------HHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 005130 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------------YSSLMGACSNAKNWQKALELYEHMKSI---- 368 (713)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--------------~~~li~~~~~~g~~~~A~~l~~~m~~~---- 368 (713)
...+..|...+++.+|.++-+...- |.+.+ .---|..+.+.|..-.|-+++.+|.+.
T Consensus 882 -kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K 956 (1189)
T KOG2041|consen 882 -KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEK 956 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhc
Confidence 1223334444444444443322110 00000 011244556666655555555555432
Q ss_pred CCCCCH----HHHHHH-HHHH----------HhCCChhHHHHHHHHHHHC-------CCCC--CHHHHHHHHHHHHhcCC
Q 005130 369 KLKPTV----STMNAL-ITAL----------CDGDQLPKTMEVLSDMKSL-------GLCP--NTITYSILLVACERKDD 424 (713)
Q Consensus 369 ~~~p~~----~~~~~l-i~~~----------~~~g~~~~A~~l~~~m~~~-------g~~p--~~~t~~~ll~a~~~~g~ 424 (713)
+.++-. ....++ +.-+ -.+|..++|..+++.-... +.-- ....|..+..--...|.
T Consensus 957 ~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~ 1036 (1189)
T KOG2041|consen 957 YVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGR 1036 (1189)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhch
Confidence 222211 111111 1111 1356667777655443211 0111 22334444444556788
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 005130 425 VEVGLMLLSQAKED-GVIPNLVMFKCII 451 (713)
Q Consensus 425 ~~~a~~~~~~m~~~-g~~p~~~~~~~li 451 (713)
++.|++.--.+.+. .+-|...+|+.|.
T Consensus 1037 v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1037 VKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred HHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 88887765555543 5667777776543
No 155
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0024 Score=59.20 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------------CCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005130 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCD----------------GDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (713)
Q Consensus 353 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (713)
|.++=....+..|.+.|+..|..+|+.|+..+=+ ..+.+-|++++++|...|+.||..|+..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3344444444555555555555555555554432 122344455555555555555555555555
Q ss_pred HHHHhcC
Q 005130 417 VACERKD 423 (713)
Q Consensus 417 ~a~~~~g 423 (713)
+.+++.+
T Consensus 146 ~iFG~~s 152 (228)
T PF06239_consen 146 NIFGRKS 152 (228)
T ss_pred HHhcccc
Confidence 5554443
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.25 E-value=0.012 Score=50.52 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=6.3
Q ss_pred HHHhcCCHHHHHHHHHH
Q 005130 206 ACGQSGAVDRAFDVLAE 222 (713)
Q Consensus 206 ~~~~~g~~~~A~~~~~~ 222 (713)
.+.+.|+++.|.+.|+.
T Consensus 48 ~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 48 AYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHhhccHHHHHHHHHH
Confidence 33333333333333333
No 157
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.20 E-value=0.0052 Score=57.07 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 005130 89 NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 163 (713)
..|-.+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3455566666665543 35566666677777777777777778777777654 2221 111222111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005130 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 212 (713)
.-| -.+.+-|++++++|...|+-||..++..|+..+++.+.
T Consensus 113 ------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 011 12445677778888888888888888888877776554
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.15 E-value=0.016 Score=49.56 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHH
Q 005130 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK--GTPEVYTIAIN 277 (713)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~ 277 (713)
+..+...+.+.|++++|.+.|..+.....+-......+..+..++.+.|+++.|...|+.+...... ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444555555666666666666655421110111223444555566666666666666655543211 12344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 005130 278 CCSQTGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~g 299 (713)
++.+.|++++|...++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 5556666666666666655553
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.15 E-value=0.0085 Score=48.28 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=37.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005130 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (713)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 212 (713)
+...+...|++++|..+|++..+.. +.+...+..+...+...+++++|.+.|....... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3333444444444444444444332 1122334444444444444444444444444332 2222344444444444444
Q ss_pred HHHHHHHHHHh
Q 005130 213 VDRAFDVLAEM 223 (713)
Q Consensus 213 ~~~A~~~~~~m 223 (713)
.+.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.11 E-value=0.011 Score=47.67 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=7.6
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 005130 344 SLMGACSNAKNWQKALELYE 363 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~~ 363 (713)
.+...+...|+.+.|...+.
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33333333333333333333
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.08 E-value=0.013 Score=59.00 Aligned_cols=142 Identities=12% Similarity=0.084 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005130 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 384 (713)
+|..++..+-+.+..+.|..+|.+..+.+ ..+..+|-....+-.. .++.+.|.++|+...+. +..+...|...+.-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666666432 2222333333333222 34455577777666543 244556666666666
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005130 385 CDGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (713)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 452 (713)
...++.+.|..+|++.... +.++. ..|...+.--.+.|+++....+.+++.+. .|+......+++
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 6777777777777766653 22222 36777777777777777777777777663 344333333443
No 162
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.74 Score=49.97 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=31.6
Q ss_pred HHHHHHHH--HHHHhCCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHH
Q 005130 374 VSTMNALI--TALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVE 426 (713)
Q Consensus 374 ~~~~~~li--~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~ 426 (713)
...|..|| .-....|..+.|++.--.+.+ ..+-|-...|+.+.-+.+....+.
T Consensus 1019 AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1019 AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFG 1074 (1189)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhh
Confidence 33444444 445567899999887555543 346677777877665544443333
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.98 E-value=0.015 Score=58.61 Aligned_cols=130 Identities=15% Similarity=0.239 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005130 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (713)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 278 (713)
+|..+++..-+.+..+.|.++|.+.... .....+++...+++. |...++.+.|..+|+...+. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4555555555555555555555555432 112222222222221 12234444455555555443 24445555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 279 CSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 279 ~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
+.+.++.+.|..+|++.... .|.. ..|...+..=.+.|+++.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55556666666666555443 2222 25555555555566666666666555553
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.95 E-value=0.021 Score=59.72 Aligned_cols=85 Identities=12% Similarity=0.125 Sum_probs=39.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005130 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVG 428 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 428 (713)
...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..++++++. .| +...|..+..+|...|++++|
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHHH
Confidence 34444455555444444332 223344444444445555555555555554442 23 333444444455555555555
Q ss_pred HHHHHHHHH
Q 005130 429 LMLLSQAKE 437 (713)
Q Consensus 429 ~~~~~~m~~ 437 (713)
...|++.++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555554444
No 165
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.88 E-value=0.64 Score=47.45 Aligned_cols=106 Identities=12% Similarity=0.106 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005130 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (713)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 352 (713)
+..|.-+...|+...|.++-.+. -.||...|-..+.+++..+++++-..+-.. +-++.-|-.++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 33344455556555555554433 135666666666666666666554443221 11234555666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005130 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (713)
Q Consensus 353 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (713)
|...+|..+...+. +..-+..|.+.|++.+|.+.-.
T Consensus 251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 66666665554421 1334555566666666655433
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.87 E-value=0.062 Score=58.80 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
+...|.++...+...|++++|...+++..+. .|+...|..+..+|...|+.++|...+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555555555566777777777776663 45666666666667777777777777766665
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.85 E-value=0.034 Score=58.11 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=88.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 005130 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (713)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 389 (713)
-...+...|+++.|+..|.++++.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3456678899999999999999875 4567889999999999999999999999998764 3467789999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005130 390 LPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (713)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 419 (713)
+++|+..|++..+ +.|+...+...+.-|
T Consensus 86 ~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999987 467766665555333
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.85 E-value=0.057 Score=50.01 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005130 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..+|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44444444445555555555554443322211 2344444445555555555555555544432 12233444444444
Q ss_pred HhcCCH
Q 005130 350 SNAKNW 355 (713)
Q Consensus 350 ~~~g~~ 355 (713)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 444443
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.82 E-value=0.14 Score=51.74 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 272 YTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
+..+...+.+.|++++|.++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555566666666666665544
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.74 E-value=0.0056 Score=46.53 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=46.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHH
Q 005130 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (713)
|++.|++++|+++|+++.... |.+..+...++..+.+.|++++|.++++.+. .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 467899999999999998876 6677777777888888888888888888765 4554444444
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.74 E-value=0.25 Score=48.50 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=25.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005130 345 LMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (713)
Q Consensus 345 li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (713)
+...|.+.|.+..|..-|+.+.+. +.+......-.|+.+|...|..++|.+...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334455555555555555555543 111122333444555555555555554443
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.72 E-value=0.017 Score=56.19 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=51.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhCCChHHH
Q 005130 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 111 (713)
+.++++|.+|++.+.+.++.. |.+.+++..-..++.+.|.++.|++-.+.... .-..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345666666666666666544 55666666556666666666666655554332 2233555555566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHH
Q 005130 112 FQVLRLVQEAGLKADCKLYT 131 (713)
Q Consensus 112 ~~l~~~m~~~g~~pd~~~~~ 131 (713)
.+.|++.++ +.|+..+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 666555554 345544443
No 173
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.72 E-value=0.052 Score=48.26 Aligned_cols=93 Identities=8% Similarity=-0.113 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005130 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (713)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 352 (713)
-.+..-+...|++++|.++|+-+...... +..-|-.|..+|-..|++++|+..|....... +-|+..+-.+..++.+.
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 34444555666666666666666655443 44555566666666667777777766666655 34555666666666667
Q ss_pred CCHHHHHHHHHHHHh
Q 005130 353 KNWQKALELYEHMKS 367 (713)
Q Consensus 353 g~~~~A~~l~~~m~~ 367 (713)
|+.+.|++-|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777666665553
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.68 E-value=0.055 Score=48.08 Aligned_cols=90 Identities=12% Similarity=0.063 Sum_probs=44.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005130 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (713)
Q Consensus 98 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (713)
+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|.......+ -|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 3334445555555555555554432 22333344444455555555555555555554442 244445555555555555
Q ss_pred HHHHHHHHHHHH
Q 005130 178 VAKAFGAYGIMR 189 (713)
Q Consensus 178 ~~~A~~l~~~m~ 189 (713)
.+.|.+.|+..+
T Consensus 119 ~~~A~~aF~~Ai 130 (157)
T PRK15363 119 VCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.68 E-value=0.0042 Score=49.69 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 005130 352 AKNWQKALELYEHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGL 429 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 429 (713)
.|+++.|..+|+++.+... .++...|..+..+|.+.|++++|++++++ .+ ..|+. .....+..+|...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666666666655421 11333444466666666666666666665 21 12222 22333356666666666666
Q ss_pred HHHHH
Q 005130 430 MLLSQ 434 (713)
Q Consensus 430 ~~~~~ 434 (713)
.++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66653
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.63 E-value=0.063 Score=49.51 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005130 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 347 (713)
..|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+....+.. +.....++.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 445555556666666666666666665443222 12355556666666666666666666665542 222344444444
Q ss_pred HHH
Q 005130 348 ACS 350 (713)
Q Consensus 348 ~~~ 350 (713)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 177
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.71 Score=44.24 Aligned_cols=143 Identities=13% Similarity=0.137 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 005130 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM--- 346 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li--- 346 (713)
.+.+.++..+.-.|.+.-...++.+..+....-+....+.+.+.-.+.|+.+.|...|+...+..-+.|....+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556666666667777777777777776655677777777777778888888888887766543333333333333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005130 347 --GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (713)
Q Consensus 347 --~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (713)
..|.-..++.+|...|.++.... ..|...-|.-.-+..-.|+..+|++.++.|.+. .|...+-+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 33455667777777777776543 334444454444444567888888888888764 4555444433
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.61 E-value=0.47 Score=46.58 Aligned_cols=177 Identities=10% Similarity=-0.014 Sum_probs=105.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005130 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 316 (713)
....+.+.|++++|.+.|+.+..... .+.... -.++.+|.+.+++++|...|++..+..+.-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 34445667777788877777766542 222322 34566777888888888888887776443233334334433331
Q ss_pred --cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005130 317 --AG---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376 (713)
Q Consensus 317 --~g---------------~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 376 (713)
.+ + ...|+.. +..++.-|-+..-..+|...+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 11 1 1123333 334444444445556666555554421 0111
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 377 MNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
--.+..-|.+.|.+.-|+.-|+.+.+. +.+........+..+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 114556688999999999999999874 223345566678899999999999988776554
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.59 E-value=0.097 Score=48.44 Aligned_cols=93 Identities=11% Similarity=0.088 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005130 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (713)
....|..+...+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566777778888888888888888876543322 3577788888888888888888888887753 2245566667
Q ss_pred HHHHHHcCCHHHHHHH
Q 005130 169 IDGCAKAGQVAKAFGA 184 (713)
Q Consensus 169 i~~~~~~g~~~~A~~l 184 (713)
...|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777765544433
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.57 E-value=0.2 Score=54.96 Aligned_cols=146 Identities=10% Similarity=-0.078 Sum_probs=105.1
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 005130 263 YNIKGTPEVYTIAINCCSQTG-----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--------KVEAAFEILQE 329 (713)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--------~~~~a~~~~~~ 329 (713)
...+.+...|...+.+..... ..+.|..+|++..+.... +...|..+..++.... ++..+.+....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345678899999988865433 367999999999987543 4455555544443321 12334444444
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005130 330 AKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (713)
Q Consensus 330 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (713)
.... ....+...|.++.-.+...|++++|...|++..+. .|+...|..+...|...|+.++|.+.+++... +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 3332 23445678888877777889999999999999987 47888999999999999999999999999877 4676
Q ss_pred HHHHH
Q 005130 409 TITYS 413 (713)
Q Consensus 409 ~~t~~ 413 (713)
..||.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 66654
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.54 E-value=0.0059 Score=48.82 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=7.2
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 005130 345 LMGACSNAKNWQKALELY 362 (713)
Q Consensus 345 li~~~~~~g~~~~A~~l~ 362 (713)
+..+|.+.|++++|..++
T Consensus 31 la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 333344444444444444
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.49 E-value=0.044 Score=50.50 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 005130 165 YGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
|..+...+...|++++|+..|++..
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al 62 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAM 62 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333334444444444444444443
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.31 E-value=0.2 Score=42.79 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 278 CCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555444322 12233334444455555555555554443
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.24 E-value=0.11 Score=52.44 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=24.5
Q ss_pred HHhc-CCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005130 314 AGHA-GKVEAAFEILQEAKNQ----GIS-VGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 314 ~~~~-g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
|... |++++|.+.|.+..+. +.. .-..++..+...+.+.|++++|.++|+++..
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444 5666666665554332 100 0122344455555566666666666665544
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.20 E-value=0.21 Score=42.74 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=25.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 005130 171 GCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (713)
++-..|+.++|+.+|++....|...+ ...+-.+.+.+...|++++|..+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555443322 12233344445555555555555554443
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.19 E-value=0.02 Score=43.43 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=23.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005130 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
.|++++|.++|+.+...... |...+..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555554443211 3444444445555555555555555544443
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.10 E-value=2 Score=43.96 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005130 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
.+..|.-|...|....|.++-.+. . -|+...|..-+.+|++.++|++-.++... +..++-|-..+..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 344455555667766666654433 2 35667777777777777777766654322 2344667777777777
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005130 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 431 (713)
.|+..+|.....++ + +..-+..|.+.|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 77777777766551 1 13334455666666666544
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.09 E-value=0.026 Score=42.38 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=29.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 347 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
..+.+.|++++|...|+.+.+.. +-+...|..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555556666666666555443 22344555555555566666666666655554
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.08 E-value=0.08 Score=51.70 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=50.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHH
Q 005130 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKT 393 (713)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A 393 (713)
.+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..... .|. ..+|..|-.+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 34455555655555555543 334444555555556666555555555554432 222 34555555556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHH
Q 005130 394 MEVLSDMKSLGLCPNTITYSI 414 (713)
Q Consensus 394 ~~l~~~m~~~g~~p~~~t~~~ 414 (713)
++.|++.++ +.|+..+|-.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHH
Confidence 666555554 4555554443
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.07 E-value=0.15 Score=54.52 Aligned_cols=216 Identities=14% Similarity=0.178 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCCCCCC
Q 005130 128 KLYTTLITTCAKSGKVDAMFEVF---------HEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKNVKPD 196 (713)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~pd 196 (713)
..+.+=+..|...|.+++|.++- +.+... ..+..-++..=++|.+-.+. -+.+.-+++|+++|-.|+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 33444455566667777665531 111111 11233345555566665543 344555677888887788
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------HHH--h-----
Q 005130 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-------MIH--K----- 262 (713)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~-------~m~--~----- 262 (713)
... +...|+-.|++.+|-++|.+--.+ |..+.+|.....++.|.++.. +|. +
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~~G~e-----------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKRSGHE-----------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHHcCch-----------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 654 344566678888888888764221 234455555555555555542 111 1
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----H-HHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDD-----M-TKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-----m-~~~g~---~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
+++... .+....+...|+.++|..+.-+ | .+.+- ..+..+...+...+-+...+..|-++|..|-.
T Consensus 701 r~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD- 775 (1081)
T KOG1538|consen 701 RNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD- 775 (1081)
T ss_pred hhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-
Confidence 011100 1223334445555555554321 1 11111 12344555555556666777778888876643
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005130 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374 (713)
Q Consensus 334 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 374 (713)
..+++++....+++.+|..+-+...+. .||+
T Consensus 776 --------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dV 806 (1081)
T KOG1538|consen 776 --------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDV 806 (1081)
T ss_pred --------HHHHhhheeecccchHhHhhhhhCccc--cccc
Confidence 245677888889999998888876653 4444
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=1.3 Score=45.40 Aligned_cols=176 Identities=14% Similarity=0.085 Sum_probs=104.3
Q ss_pred CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005130 232 PDHITIGALM-KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308 (713)
Q Consensus 232 pd~~~~~~ll-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 308 (713)
|...++-.+- .++...|++++|..+-..+.+.+- ...+...+++ +.-.++.+.|...|++-+..+ |+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~-- 238 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQK-- 238 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhh--
Confidence 4444444332 345667777777777666665542 1233333333 234566777777777766653 33222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHH
Q 005130 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALC 385 (713)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~p~~~~~~~li~~~~ 385 (713)
.+..-...+.+..+.+.| +...+.|++..|.+.|.+.... ...|+...|-.......
T Consensus 239 --------sk~~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 239 --------SKSASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred --------HHhHhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 122222223333344443 3456788888888888887653 34556666777777788
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHC
Q 005130 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
+.|+..+|+.--++... .|..-.-.+ ..++.-.+++++|++.|+...+.
T Consensus 299 rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999888777654 233322222 24555678888898888887764
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.98 E-value=0.93 Score=43.17 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=30.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005130 100 SVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 100 ~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
..+...|++.+|...|+.+...-... -....-.++.++.+.|+++.|...|+...+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666666666666666542111 1233445566666666666666666666554
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=3 Score=46.05 Aligned_cols=123 Identities=16% Similarity=0.149 Sum_probs=57.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhh--HHHHHHHHHhh-hCCC--CCHHHHHHHHHHHHhC
Q 005130 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ--KAIKEAFRFFK-LVPN--PTLSTFNMLMSVCASS 105 (713)
Q Consensus 31 ~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~-~~~~--~~~~~~~~li~~~~~~ 105 (713)
..++|+..+.+..|+++...+...-... +.++ .--.....++ ..-+++++..+ ++.. ..-.+|..+.+-....
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl-~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVL-LEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHH-HHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 4556677788888888877775332111 1222 1112222211 11122333222 2222 3445676776666777
Q ss_pred CChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005130 106 KDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~----pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (713)
|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+.+
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 7777777666532222110 0111233344444555555555555555543
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.86 E-value=1.3 Score=42.19 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=11.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 005130 346 MGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 346 i~~~~~~g~~~~A~~l~~~m~~ 367 (713)
...|.+.|.+..|..-|+.+.+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 195
>smart00463 SMR Small MutS-related domain.
Probab=95.83 E-value=0.037 Score=43.67 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=57.7
Q ss_pred eeeccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccCCccceeccCCchhhhhhhhhhHHHHHHHHHhCCCCCC
Q 005130 577 VVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQG 656 (713)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 656 (713)
+.+|+|+++...|...+..+|+..... +.-+.+ .+++|.|.++....+.++..|.++|...+.+|..
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~----~~~~~~---------~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~ 68 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARLK----GLEQKL---------VIITGKGKHSLGGKSGVKPALKEHLRVESFRFAE 68 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHHc----CCCceE---------EEEEcccCCCccchhhHHHHHHhchhhcccccCC
Confidence 479999999999988887788766643 211233 3568888887655567999999999999999987
Q ss_pred CCcc-ceEEec
Q 005130 657 NGSY-GKIRIN 666 (713)
Q Consensus 657 ~~~~-g~~~~~ 666 (713)
+ .| |.+++.
T Consensus 69 ~-~~~G~~~v~ 78 (80)
T smart00463 69 E-GNSGVLVVK 78 (80)
T ss_pred C-CCCeEEEEE
Confidence 6 56 988864
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.45 Score=46.87 Aligned_cols=98 Identities=12% Similarity=0.010 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005130 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMKSIKLKPTVSTMNA 379 (713)
Q Consensus 303 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~~~~p~~~~~~~ 379 (713)
|...|-.|..+|...|+.+.|...|....+.. .+++..+..+..++... ..-.++..+|+++.... .-|+.+-..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 44555555555555555555555555554431 22333333333332221 12334555555555432 223444444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 005130 380 LITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
|...+...|++.+|...|+.|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 44555555555555555555554
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.74 E-value=0.049 Score=40.85 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=28.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
..+.+.|++++|...|+.+.+.. +.+...+..+..++.+.|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555544 33445555555555555555555555555544
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.65 E-value=0.055 Score=41.11 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 005130 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMT 296 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~ 296 (713)
+|..+...+...|++++|...|++..+.+ +.+...|..+..+|.+.| ++++|++.|++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 44444444444555555555554444443 333444444444444444 3455554444443
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.58 E-value=0.19 Score=49.76 Aligned_cols=58 Identities=22% Similarity=0.106 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005130 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (713)
|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+...|...|++++|...|..+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333334445555555555555543 2221 233344455555555555555555554
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.50 E-value=0.73 Score=41.13 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005130 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 330 (713)
..++..+...|++++|..+.+.+....+- |...|..+|.+|...|+...|.+.|..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444445555555555554444332 4444555555555555555555544443
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.43 E-value=1.3 Score=47.71 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 005130 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (713)
Q Consensus 44 A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (713)
-+--++++.++|-.|+... +...|.-.|++.+|-++|.+
T Consensus 619 li~EL~~~k~rge~P~~iL----lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLL----LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHhcCCCchHHH----HHHHHHhhhhHHHHHHHHHH
Confidence 3334455555554444332 33445556666666666653
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.42 E-value=0.077 Score=40.28 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHH
Q 005130 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 154 (713)
.+|..+...+...|++++|+..|.+.++.. +.+...|..+..+|...| ++++|++.|+...
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444455555555554444432 223344444444444444 3444444444443
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.39 E-value=0.34 Score=48.02 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHH
Q 005130 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNA 202 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~ 202 (713)
.|...+..+.+.|++++|...|+.+.+. .|+. .++-.+...|...|++++|...|+.+.+.-. +.....+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4554444445556677777777776665 2322 3555666666677777777777777664410 111333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC
Q 005130 203 LITACGQSGAVDRAFDVLAEMNAE 226 (713)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~ 226 (713)
+...+...|+.++|..+|+++...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455566667777777777766653
No 204
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.93 Score=44.70 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 005130 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAFEILQEAKNQGISVGIISY 342 (713)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~ 342 (713)
+.|...|-.|...|...|+++.|..-|.+..+.... |...+..+..++.... ...++..+|+++.+.. +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 567788999999999999999999999888775332 5555555555554432 3457888898888875 4567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005130 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (713)
Q Consensus 343 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 382 (713)
.-|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 778888889999999999999998763 44445555554
No 205
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.36 E-value=0.12 Score=49.65 Aligned_cols=112 Identities=19% Similarity=0.269 Sum_probs=67.9
Q ss_pred HHhhhCC--CCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005130 82 RFFKLVP--NPTLSTFNMLMSVCASS-----KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (713)
Q Consensus 82 ~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (713)
..|..++ ..|-.+|-+.+..+... +..+--...++.|.+-|+..|..+|+.||+.+-+..-... .+|+
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ--- 129 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQ--- 129 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHH---
Confidence 3444444 45556666666555432 4455555666677777777777777777766544321110 1111
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005130 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (713)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 212 (713)
...--|- .+-+-+++++++|...|+.||..+-..|+.++++.+-
T Consensus 130 ------------~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 ------------KVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------------HHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111121 2334578899999999999999999999999988765
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.32 E-value=0.3 Score=42.23 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhh-------------hCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c
Q 005130 198 VVFNALITACGQSGAVDRAFDVLAEMN-------------AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-Y 263 (713)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~-------------~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~ 263 (713)
.++.++|.++++.|+++....+++..- ....+..|+..+..+++.+|+..|++..|.++.+.+.+ .
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555544444321 11123444555555555555555555555555544432 2
Q ss_pred CCCCCHHHHHHHHH
Q 005130 264 NIKGTPEVYTIAIN 277 (713)
Q Consensus 264 ~~~~~~~~~~~li~ 277 (713)
+++.+...|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33333444444443
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.12 E-value=0.14 Score=45.81 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 005130 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT-----KKGVIPDEVFL 307 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t~ 307 (713)
+...++..+...|+++.|..+.+.+...+ +.+...|..+|.+|...|+...|.++|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556667778888888888888888776 6677888888888888888888888888764 34777776553
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=3.4 Score=39.81 Aligned_cols=132 Identities=10% Similarity=0.047 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHH----
Q 005130 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA---- 239 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~---- 239 (713)
+-+.++..+.-.|.+.-...++.+.++...+.++.....|.+.-.+.|+.+.|...|++..+.. -..|..+.+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~--~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT--QKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--hhhhccchhHHHHh
Confidence 3455666666667777777777777776656666777777777777777777777777655431 1222222222
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 240 -LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 240 -ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
....|.-.+++..|...|.++...+ +.++..-|.-.-+..-.|+..+|++..+.|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2234455566666666666666655 334444444333444456666677777666665
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.96 E-value=0.15 Score=39.21 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=25.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 348 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.|.+.+++++|.++++.+.... +.+...|......|.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555555555555544432 22333444444445555555555555555444
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.95 E-value=0.35 Score=41.81 Aligned_cols=97 Identities=7% Similarity=-0.007 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005130 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (713)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 417 (713)
|..++.++|.++++.|+++....+.+..= |+..+. -...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~---------~~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNG---------KKKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCC---------ccccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566777777777777777666665432 111111 000000 1123457899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 005130 418 ACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (713)
Q Consensus 418 a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~ 454 (713)
+++..|++..|.++.+...+. +++-+..+|..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999988764 8888888888888653
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.82 E-value=0.38 Score=48.86 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=37.8
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHH
Q 005130 101 VCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFH 151 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~ 151 (713)
-+++.|+......+|+..++.|- -|. ..|..|.++|.-.+++++|++.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 37788888888889988888873 343 356777778888888888888764
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.75 E-value=3.2 Score=37.82 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHH
Q 005130 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GTPEVYT 273 (713)
Q Consensus 195 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~ 273 (713)
|+...-..|..+..+.|+..+|...|.+.... .+..|....-.+.++....+++..|...++.+-+.+.. .++...-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG--~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSG--IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc--ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 44444444555555666666666666555432 23344444445555555555555555555554443210 0122223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 274 IAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
.+...|.-.|.+.+|..-|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 3334444444444444444444433
No 213
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.66 E-value=0.24 Score=47.83 Aligned_cols=117 Identities=21% Similarity=0.298 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 005130 124 KADCKLYTTLITTCAK-----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (713)
Q Consensus 124 ~pd~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 198 (713)
+.|-.+|-+.+..+.. .+.++-....+..|.+.|++.|..+|+.|++.+-+-. +.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence 3455666666666654 3567777778888999999999999999888764422 1222 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 005130 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIH 261 (713)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~-~~A~~~~~~m~ 261 (713)
.|....--|-+. -+-+.+++++|.. +|+.||..+-..|++++.+.+-. .+..++.--|.
T Consensus 127 vfQ~~F~HYP~Q--Q~C~I~vLeqME~--hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYPQQ--QNCAIKVLEQMEW--HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCchh--hhHHHHHHHHHHH--cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 222222222222 3457889999986 59999999999999999998874 33334444443
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.66 E-value=5.4 Score=41.37 Aligned_cols=31 Identities=19% Similarity=0.061 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 408 NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
|--.+.+++.++.-.|+.+.|.+..+.|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445667777777788888888888887765
No 215
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.45 E-value=2.7 Score=37.12 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=18.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005130 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
++..+...+........++.+...+. .+...+|.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33344444444444444444444432 344444444444444
No 216
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.41 E-value=1.6 Score=46.74 Aligned_cols=169 Identities=12% Similarity=0.155 Sum_probs=104.3
Q ss_pred CcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 005130 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (713)
Q Consensus 24 ~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 103 (713)
...+...-|...+-+++++++.++.+.-.-..-+| ...+..+++++.+.|..+.|+.+-. |. ..-.....
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl 329 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELAL 329 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHH
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHH
Confidence 34566777888888899999877774111111122 3345667788888888888887743 22 22344566
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005130 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (713)
Q Consensus 104 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (713)
+.|+++.|.++.+. ..+...|..|.+.+.+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 77888888776542 23666888888888888888888888877652 5667777778888877777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005130 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 184 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (713)
+-+.....|- +|....++.-.|+.++..+++.+-
T Consensus 395 l~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7777666652 555556666678888877777654
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.39 E-value=1.5 Score=44.78 Aligned_cols=265 Identities=17% Similarity=0.078 Sum_probs=131.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHH--HhC--CCC-CCHHHHHHHHH
Q 005130 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQVAKAFGAYGIM--RSK--NVK-PDRVVFNALIT 205 (713)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m--~~~--g~~-pd~~~~~~li~ 205 (713)
.-+++.|+......+|+..++.|-+ |.. +|..|-++|.-.+++++|++....= ..+ |-+ -...+...|-.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4478999999999999999998844 433 5667777888888999998875421 110 100 00111112222
Q ss_pred HHHhcCCHHHHHHHHHHh----hhCCCCCCCCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q 005130 206 ACGQSGAVDRAFDVLAEM----NAEVHPVDPDHITIGALMKACANAGQ--------------------VDRAREVYKMIH 261 (713)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m----~~~~~~~~pd~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~m~ 261 (713)
.+--.|.+++|.-.-.+- .+.+..+ .....+-.+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 233334445444321110 0000000 112233344555544432 223333332111
Q ss_pred ----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 262 ----KYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (713)
Q Consensus 262 ----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 331 (713)
+.|-. ..-..|..|.+.|.-.|+++.|+...+.-+. -|-. .....++.+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 11100 0012344555555556777777665543221 1111 122345566666666777777776665432
Q ss_pred ----HCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005130 332 ----NQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----I-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 332 ----~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
+.| -......+.+|.+.|.-..++++|+..+.+-.. . ...-....+-+|..+|...|..++|+.+.+.-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 222 122344556666666666667777666654221 0 001234455566666666666666666555443
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.37 E-value=2.7 Score=35.96 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005130 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (713)
Q Consensus 276 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 334 (713)
++.+.+.|+-+.-.+++.++.+ +-.+++.....+..||.+.|+..++-+++.+.-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444433 112344444444444444444444444444444444
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.32 E-value=0.29 Score=37.54 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=24.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005130 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
+.+.++++.|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444444444444432 223334444444444444444444444444443
No 220
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=7.5 Score=40.13 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=54.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005130 278 CCSQTGDWEFACSVYDDMTKK---GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (713)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 354 (713)
-..+.|.+..|.+.|.+.+.. ++.|+...|.....+..+.|++++|+.--....+.. ..-+..|..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHH
Confidence 345677777888877776654 345556666666667777788877777666655432 0011222223344555667
Q ss_pred HHHHHHHHHHHHhC
Q 005130 355 WQKALELYEHMKSI 368 (713)
Q Consensus 355 ~~~A~~l~~~m~~~ 368 (713)
|++|.+-|+...+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777766543
No 221
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=6.9 Score=43.99 Aligned_cols=175 Identities=12% Similarity=0.099 Sum_probs=100.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh-CCCCCHHHHHHHHHHHHhCCChHH
Q 005130 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL-VPNPTLSTFNMLMSVCASSKDSEG 110 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 110 (713)
.+.|++..-++-|+.+.+.-.... ..-..+|...+..+...|++++|...|-+ +.--++ ..+|.-|....+..+
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHH
Confidence 445666667777776664432211 22355777788888899999999988754 332222 234555666666677
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005130 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (713)
Q Consensus 111 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 190 (713)
--..++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+.-. .|.. ..-....+..+-+.+-.++|..+-.+...
T Consensus 416 Lt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 416 LTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 77788888888854 44455678999999988877666554433 2211 01123445555555555555544433321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005130 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 191 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (713)
+......+ +-..+++++|++.+..+
T Consensus 492 -----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 -----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred -----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 12222222 22345566666665544
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.13 E-value=1.5 Score=47.07 Aligned_cols=132 Identities=12% Similarity=0.133 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005130 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (713)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 207 (713)
.-.+.++..+-+.|..+.|+++-..-. .-.....+.|+++.|.++-++. .+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 346666666666677777766533221 2244455667777766554332 2556777777777
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005130 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
.+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++-+.....| -+|....++...|+.++
T Consensus 358 L~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEE 420 (443)
T ss_dssp HHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHH
Confidence 77777777777776543 24455556666677666666666555554 24445555555566666
Q ss_pred HHHHHHH
Q 005130 288 ACSVYDD 294 (713)
Q Consensus 288 A~~l~~~ 294 (713)
..+++.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.07 E-value=8.4 Score=39.98 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=56.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005130 132 TLITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (713)
Q Consensus 132 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 205 (713)
.++-.|....+++...++.+.+.... +.-...+--...-++.+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44556777888888888888887641 11122222233334555 7888888888888665555677777777666
Q ss_pred HHHhc---------CCHHHHHHHHHHh
Q 005130 206 ACGQS---------GAVDRAFDVLAEM 223 (713)
Q Consensus 206 ~~~~~---------g~~~~A~~~~~~m 223 (713)
.|-.. ...+.|...|.+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 55321 2255566666543
No 224
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.94 E-value=3.7 Score=36.20 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005130 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 317 (713)
..++..+.+.+.......+++.+...+ ..++..+|.++..|++.+ ..+..+.+.. .++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555666666666777776666655 355566677777776553 2333333332 11223344455666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005130 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (713)
Q Consensus 318 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 385 (713)
+.++++..++..+.. +...+..+.+. ++++.|.+.+.+ ..+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 666666665554321 11122222222 556666665543 124445555555443
No 225
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.94 E-value=4.9 Score=36.69 Aligned_cols=131 Identities=17% Similarity=0.128 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 005130 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (713)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~ 238 (713)
-|++.---.|..+....|+..+|...|.+...--+.-|....-.+.++....++...|...++.+-+-. +-..+..+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN-PAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-CccCCCCchH
Confidence 456666667788888888888888888888765556677777778888888888888888888775431 1111223444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005130 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (713)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (713)
.+...|...|.+.+|+.-|+.....- |+...-.-....+.+.|+.+++..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 56677888888888888888877653 33333222333455666655554433
No 226
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.87 E-value=1.6 Score=39.13 Aligned_cols=122 Identities=12% Similarity=0.169 Sum_probs=80.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCC----CCHH-HHHHHHH--HHHhCCC
Q 005130 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS-TFNMLMS--VCASSKD 107 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~li~--~~~~~g~ 107 (713)
|.+.+..++|+.-|.++.+.|.-............+..+.|+...|+..|+++.. |-+. -..-|-. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 5589999999999999999886555555555556667778999999999997642 2221 1111111 2455677
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005130 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
++......+-+-..+-+.-...-..|.-+..+.|++..|.++|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 7776666665554443333444556666666778888888888777654
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=93.85 E-value=0.5 Score=42.36 Aligned_cols=82 Identities=17% Similarity=0.069 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005130 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (713)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 149 (713)
..|++++|..+|..+. .-|..-|..|...|-..+++++|+..|......+ .-|+..+-....+|...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 4456666666665432 2334444444455555566666666665554443 22333344456666666777777777
Q ss_pred HHHHHH
Q 005130 150 FHEMVN 155 (713)
Q Consensus 150 ~~~m~~ 155 (713)
|+....
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 766665
No 228
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.74 E-value=7.8 Score=39.16 Aligned_cols=130 Identities=18% Similarity=0.282 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 005130 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AG----KVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN- 354 (713)
Q Consensus 285 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~--~g----~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~- 354 (713)
+++.+.+++.|.+.|+.-+..+|-+....... .. ....|..+|+.|++... .++...+..|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777666665553333222 11 24567788888877643 2344555555544 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005130 355 ---WQKALELYEHMKSIKLKPTV-STMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILL 416 (713)
Q Consensus 355 ---~~~A~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (713)
.+.++..|+.+.+.|+.++- ..+.+-|-+++.... ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 35567777777776665543 344444444443222 346777888888888887776666554
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.52 E-value=0.25 Score=38.56 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 376 TMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
+|+.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555444321 011 11 2344445555555566666655555443
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.26 E-value=11 Score=38.63 Aligned_cols=148 Identities=17% Similarity=0.056 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH----
Q 005130 285 WEFACSVYDDMTKKGVIPDEVF-LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL---- 359 (713)
Q Consensus 285 ~~~A~~l~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~---- 359 (713)
...|...-.+..+ +.||.+- -..-..++.+.|++.++-.+++.+-+....|++. ++..+.+.|+.-...
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHH
Confidence 4444444444333 2344322 2233456788899999999999988876555542 333456666532211
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 005130 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKED 438 (713)
Q Consensus 360 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~ 438 (713)
+-++.|+ +.+..+--.+..+-...|++..|..--+.... ..|....|..+.+.-.. .|+-.++++.+.+..+.
T Consensus 319 ~~L~slk----~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 KKLESLK----PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhcC----ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1122333 34566777777888888998888776666555 47888888877766544 49999999999999887
Q ss_pred CCCCCH
Q 005130 439 GVIPNL 444 (713)
Q Consensus 439 g~~p~~ 444 (713)
.-+|+-
T Consensus 393 PrdPaW 398 (531)
T COG3898 393 PRDPAW 398 (531)
T ss_pred CCCCcc
Confidence 666654
No 231
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.23 E-value=4.6 Score=40.78 Aligned_cols=131 Identities=14% Similarity=0.258 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhhCCCCC-CCCHHHHHHHHHHHHHcCC-
Q 005130 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ--SG----AVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQ- 249 (713)
Q Consensus 178 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~~~-~pd~~~~~~ll~~~~~~g~- 249 (713)
+++.+.+++.|.+.|+..+..+|-+....... .. ....|..+|+.|++...-+ .++..++..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34555667777777777666665543222222 11 2456777888887653221 2445555555543 2233
Q ss_pred ---HHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005130 250 ---VDRAREVYKMIHKYNIKGTP--EVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSAL 310 (713)
Q Consensus 250 ---~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~l 310 (713)
.+.++.+|+.+.+.|+..+. ...+.++........ ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34556666666666654422 222222222221111 33566667777777766655555443
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.08 E-value=1.6 Score=45.93 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=25.2
Q ss_pred CCCCCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005130 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (713)
Q Consensus 19 ~~~~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~ 55 (713)
...|.+.......-..|.+.|++++|+..|++.++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN 105 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3445555555555566778888888888888877765
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=10 Score=37.59 Aligned_cols=150 Identities=17% Similarity=0.099 Sum_probs=83.0
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005130 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (713)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 216 (713)
....|++.+|..+|+.......+ +...--.|..+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34566777777777766655322 34455566677777777777777777765442122222222334444444444444
Q ss_pred HHHHHHhhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005130 217 FDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVY 292 (713)
Q Consensus 217 ~~~~~~m~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (713)
.++-.+... .| |...-..+...+...|+.+.|.+.+-.+.+++. -.|...-..+++.+.--|.-+.+...+
T Consensus 223 ~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 223 QDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 444444432 23 555556666777777777777766665554432 224456666777776666444333333
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.06 E-value=2.4 Score=44.59 Aligned_cols=63 Identities=11% Similarity=-0.024 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005130 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (713)
+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|++++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666666666666666666654 3332 2466666666666666666666666664
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=10 Score=37.51 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=70.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCH
Q 005130 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~ 250 (713)
.....|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+..... .........-|..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHHHHHHHhcC
Confidence 3445666666666666665542 22233444566666666777777777666543210 11111122233444444444
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 005130 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAG 318 (713)
Q Consensus 251 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~g 318 (713)
.+...+-...-. + +.|...-..+...|...|+.+.|++.+-.+.+. |.. |...-..+++.+.-.|
T Consensus 220 ~~~~~l~~~~aa-d-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA-D-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 333333333322 1 234555556666666667777666666555443 222 3344455555555555
No 236
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.99 E-value=13 Score=38.86 Aligned_cols=418 Identities=13% Similarity=0.137 Sum_probs=209.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC----chHHHHHHHHHHHHhhHHHHHH---HHHhhhCCCCCHHHHHHHHHH--HHhCC
Q 005130 36 IRQGRISECIDLLEDMERKGLLD----MDKVYHARFFNVCKSQKAIKEA---FRFFKLVPNPTLSTFNMLMSV--CASSK 106 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~~~~~~~~~li~~--~~~~g 106 (713)
-+.+++.+|..+|.+.-..---. ....+.+.++.++... +++.- +..+++-.. ...|-.+..+ +.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhh
Confidence 38999999999999887543111 1233444455544432 22222 222333222 2234444433 45678
Q ss_pred ChHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHH
Q 005130 107 DSEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGAL 168 (713)
Q Consensus 107 ~~~~A~~l~~~m~~~--g~~p------------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~l 168 (713)
+++.|++.+..-... +-.| |-..-+..++++...|++.+++.+++++... .+.-|..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999888766554 3222 2223356678888999999999998887654 345788999987
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhh
Q 005130 169 IDGCAKAGQ---------------VAKAFGAYGIMRSK------NVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNA 225 (713)
Q Consensus 169 i~~~~~~g~---------------~~~A~~l~~~m~~~------g~~pd~~~~~~li~~~~~~--g~~~~A~~~~~~m~~ 225 (713)
+-+++++=- ++.+.-...+|... .+.|-...+..++.-..-. .+..--++++..-..
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 777665311 22222222333221 1233333333333222111 112222333332221
Q ss_pred CCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005130 226 EVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (713)
Q Consensus 226 ~~~~~~pd~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 300 (713)
+-+.|+- .+...|...+.. +.+++..+-+.+....+.+ -..++..+++...+.++...|...+.-+..-..
T Consensus 254 --~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 254 --FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred --hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 2344542 233444444444 4555544444333221111 125677788888888888888888776654422
Q ss_pred CCCHHHH-------HHHHHHHH-h---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCC-HHHHHHHHHHH
Q 005130 301 IPDEVFL-------SALIDFAG-H---AGKVEAAFEILQEAKNQGISVGIISYSSL---MGACSNAKN-WQKALELYEHM 365 (713)
Q Consensus 301 ~p~~~t~-------~~li~~~~-~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~l---i~~~~~~g~-~~~A~~l~~~m 365 (713)
+...- ..+.+..+ . .-++..=+.++......++.- -....-| ..-+.+.|. -++|..+++.+
T Consensus 330 --~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 330 --RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred --cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 22111 11111111 0 111222334444444333211 1111112 223445555 77888888887
Q ss_pred HhCCCCCCHHHHHHHH----HHHHhC---CChhHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHhcCCHHHHHHHH
Q 005130 366 KSIKLKPTVSTMNALI----TALCDG---DQLPKTMEVLSDMKSLGLCPNTI----TYSILLVA--CERKDDVEVGLMLL 432 (713)
Q Consensus 366 ~~~~~~p~~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a--~~~~g~~~~a~~~~ 432 (713)
.+.. .-|..+-|.+. ..|.+. ..+.+-+.+-+-..+.|+.|-.+ .-+.+.+| +...|++.++.-.-
T Consensus 407 l~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 407 LQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred HHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 7642 23443333322 234332 23444444444456778777433 33333332 45678888876554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH---hhHHHHHHHHHH
Q 005130 433 SQAKEDGVIPNLVMFKCIIGMCS---RRYEKARTLNEH 467 (713)
Q Consensus 433 ~~m~~~g~~p~~~~~~~li~~~~---r~~~~a~~l~~a 467 (713)
.-+.+ +.|.+.+|.-+- +|. ++|.+|......
T Consensus 486 ~WL~~--iaPS~~~~RLlG-l~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 486 SWLTK--IAPSPQAYRLLG-LCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHH--hCCcHHHHHHHH-HHHHHHhhHHHHHHHHHh
Confidence 44444 778888876543 332 367777666543
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=92.97 E-value=0.94 Score=40.64 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=40.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005130 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (713)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 324 (713)
...|++++|..+|.-+.-.+ .-+..-|..|..++-..+++++|+..|......+.. |...+-....++...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 34555555555555554443 223334444555555555555555555544332221 2222333444455555555555
Q ss_pred HHHHHHHH
Q 005130 325 EILQEAKN 332 (713)
Q Consensus 325 ~~~~~m~~ 332 (713)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55554444
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.96 E-value=9.4 Score=37.00 Aligned_cols=54 Identities=4% Similarity=-0.137 Sum_probs=33.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005130 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTI---TYSILLVACERKDDVEVGLMLLSQA 435 (713)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m 435 (713)
..-|.+.|.+..|..-+++|++. .+-+.. .+-.+..+|.+.|..++|...-.-+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 44577788888888888888775 222223 3444456777777777776654433
No 239
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.91 E-value=12 Score=38.27 Aligned_cols=278 Identities=15% Similarity=0.115 Sum_probs=172.3
Q ss_pred HHHHHHHHHhhhC---CCCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHHH
Q 005130 75 KAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAMF 147 (713)
Q Consensus 75 ~~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~--~~~~li~~~~~~g~~~~A~ 147 (713)
|+-..|.++-.+. ...|....-.++.+ -.-.|+++.|.+-|+.|.. .|... -...|.-..-+.|+.+.|.
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 4555555554332 23344444444433 3446899999999999985 22222 1233444445678888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHHh---cCCHHHHHHHHH
Q 005130 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVV--FNALITACGQ---SGAVDRAFDVLA 221 (713)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~--~~~li~~~~~---~g~~~~A~~~~~ 221 (713)
..-+..-..- +--...+.+.+...|..|+++.|+++.+.-+... +.+|..- -..|+.+-.. .-+...|...-.
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 8887776543 2245678889999999999999999998776542 3444332 2234433222 234556666555
Q ss_pred HhhhCCCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC
Q 005130 222 EMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KG 299 (713)
Q Consensus 222 ~m~~~~~~~~pd~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g 299 (713)
+..+ +.||.+-- ..-..++.+.|+..++-.+++.+-+... .+.++... .+.+.|+ .++.-++...+ ..
T Consensus 254 ~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP--HP~ia~lY--~~ar~gd--ta~dRlkRa~~L~s 323 (531)
T COG3898 254 EANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP--HPDIALLY--VRARSGD--TALDRLKRAKKLES 323 (531)
T ss_pred HHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--ChHHHHHH--HHhcCCC--cHHHHHHHHHHHHh
Confidence 5443 35553322 2334678999999999999999987754 44444332 2344554 33333333222 11
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 005130 300 VIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELYEHMKSI 368 (713)
Q Consensus 300 ~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~ 368 (713)
.+| +..+...+..+....|++..|..--+...+. .|....|..|.+.-. ..|+-.++...+.+..+.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 223 5567777888888899998888766666553 577777877777664 459999999999888764
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.89 E-value=5.5 Score=34.16 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005130 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 370 (713)
.....+.+....|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555666677676666766665532 55666666677777777777777777777666654
No 241
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.83 E-value=0.31 Score=38.00 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=8.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 005130 201 NALITACGQSGAVDRAFDVLAE 222 (713)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~ 222 (713)
+.+...|...|++++|+..|++
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3333444444444444444433
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.70 E-value=7.8 Score=38.79 Aligned_cols=151 Identities=9% Similarity=-0.017 Sum_probs=103.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHH
Q 005130 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI----ISYSSLMGACSNAKNWQ 356 (713)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~ 356 (713)
-.|+..+|-..++++++.-+. |...+...=.+|.-.|+.+.-...++++... ..+|. .+-..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457777788888888876443 7777888888888899988888888888765 12333 22333344456889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---GLCPNTITYSILLVACERKDDVEVGLMLLS 433 (713)
Q Consensus 357 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (713)
+|++.-++..+.+ +-|...-.++...+-.+|+..++.++..+-... +--.-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999988887654 456677778888888999999999887653321 000011223333334555689999999996
Q ss_pred H
Q 005130 434 Q 434 (713)
Q Consensus 434 ~ 434 (713)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=3.8 Score=42.18 Aligned_cols=93 Identities=18% Similarity=0.098 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 005130 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV-HTYGALIDGC 172 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~ 172 (713)
+++.+...+.+.+++..|++.....+..+ ++|+...-.-..+|...|+++.|+..|+.+.+. .|+. .+-+-|+.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 45555556666677777777776666655 556666666666666677777777777777665 3333 3333343333
Q ss_pred HHcCCHH-HHHHHHHHHH
Q 005130 173 AKAGQVA-KAFGAYGIMR 189 (713)
Q Consensus 173 ~~~g~~~-~A~~l~~~m~ 189 (713)
-+..... ...++|..|.
T Consensus 336 ~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 3333322 2345555554
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.45 E-value=10 Score=41.30 Aligned_cols=94 Identities=12% Similarity=0.082 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHH
Q 005130 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRV 198 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ 198 (713)
.+..+++..+-.|+-+.+++.+.+..+.+--... .+|...+..++- ....+.|.++++.+.+. .|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 3456677777778888888888876653211122 234444443333 34566777777777665 56655
Q ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHhh
Q 005130 199 VFNALI-TACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 199 ~~~~li-~~~~~~g~~~~A~~~~~~m~ 224 (713)
.|...- +.+...|++++|.+.|++..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 554332 44555677777777777543
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.92 E-value=4.9 Score=34.33 Aligned_cols=91 Identities=16% Similarity=0.103 Sum_probs=61.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCC--CHHHHHHHHHHHHhcCC
Q 005130 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCP--NTITYSILLVACERKDD 424 (713)
Q Consensus 348 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p--~~~t~~~ll~a~~~~g~ 424 (713)
+.+..|+++.|++.|.+....- +.....||.-..+|.-.|+.++|++-+++..+. |-+- -...|..--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4667788888888887766532 345677888888888888888888888777653 2111 11224433455677888
Q ss_pred HHHHHHHHHHHHHCC
Q 005130 425 VEVGLMLLSQAKEDG 439 (713)
Q Consensus 425 ~~~a~~~~~~m~~~g 439 (713)
.+.|+.-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888776665
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.33 E-value=6.9 Score=33.47 Aligned_cols=90 Identities=10% Similarity=0.046 Sum_probs=46.9
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHcCCH
Q 005130 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA---LIDGCAKAGQV 178 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---li~~~~~~g~~ 178 (713)
.+..|+++.|++.|.+.+..- +-....||.-..++.-.|+.++|++-+++..+..-........+ -...|-..|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455566666666666555432 33455666666666666666666666665554321222222222 12234455666
Q ss_pred HHHHHHHHHHHhCC
Q 005130 179 AKAFGAYGIMRSKN 192 (713)
Q Consensus 179 ~~A~~l~~~m~~~g 192 (713)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666665554444
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.19 E-value=18 Score=36.36 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005130 199 VFNALITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (713)
Q Consensus 199 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 263 (713)
+...++.+|...+.. ++|..+++.+..+ .+-+ ..++..-+..+.+.++.+.+.+++..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555555443 3444455544332 1212 223333444455556666666666665543
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.15 E-value=10 Score=41.26 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 005130 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTP------EVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVF 306 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t 306 (713)
+..+++...-.||-+.+.+.+....+.+-...+ -.|..++..++. ....+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555555556666666666554432211111 123333333332 34456667777766665 344444
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005130 307 LSAL-IDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 307 ~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
|... ...+...|++++|.+.|+...... .+.....+--+.-.+.-.+++++|.+.|..+.+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 4332 233445666777777766544211 011122333344445555556666666655554
No 249
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.65 E-value=34 Score=38.56 Aligned_cols=152 Identities=10% Similarity=0.088 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCC
Q 005130 30 HSYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (713)
..++-|++.+.+++|+++.+..... .+. -......++..+...|++++|-...-.|...+..-|.--+..++..++
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 3456689999999999988766532 232 222333444445566788888888777777777778777777777766
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH------------------HHHCCCCCCHHHHHHHH
Q 005130 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE------------------MVNAGIEPNVHTYGALI 169 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~------------------m~~~g~~~~~~~~~~li 169 (713)
..... ..+.......+...|..++..+.. .+...-.++..+ ..+. .-+...-..|.
T Consensus 439 l~~Ia---~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La 512 (846)
T KOG2066|consen 439 LTDIA---PYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLA 512 (846)
T ss_pred cchhh---ccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHH
Confidence 54322 222222112345566666666655 222111111111 0000 11222233467
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 005130 170 DGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~ 189 (713)
..|...+++..|+.++-..+
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77777788888887777665
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.14 E-value=17 Score=34.25 Aligned_cols=200 Identities=17% Similarity=0.070 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 005130 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (713)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~- 312 (713)
..+......+...+++..+...+...... ........+......+...+.+..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44455555566666666666665555432 2233344555555566666666666666666665443321 11222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCC
Q 005130 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQ 389 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~ 389 (713)
.+...|+++.|...+........ ......+......+...++.+.|...+....... .. ....+..+-..+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777777777777644221 1233444444444667777888888877776542 12 35667777777777778
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 390 LPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.++|...+...... .|+ ...+..+...+...+..+++...+.+..+.
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888777763 343 333444444444666777777777776653
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.07 E-value=6.2 Score=38.54 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=10.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh
Q 005130 203 LITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~ 224 (713)
|...+...|++++|..+|..+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~ 205 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVV 205 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHH
Confidence 4444444444444444444443
No 252
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.93 E-value=3.5 Score=40.83 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 005130 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~~~~l 203 (713)
++..++..+..+|+.+.+.+.++++.... +-|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566777777777777777777777664 33677777888888888888888777777654 4677766666555
Q ss_pred HHH
Q 005130 204 ITA 206 (713)
Q Consensus 204 i~~ 206 (713)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.87 E-value=21 Score=40.36 Aligned_cols=177 Identities=15% Similarity=0.153 Sum_probs=107.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 005130 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC----GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~l 240 (713)
...-++..++...++.|+.+-+.- + .|..+...+...| .+.|++++|...|-+-.. -++|. .+
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~---~le~s-----~V 403 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG---FLEPS-----EV 403 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc---cCChH-----HH
Confidence 345566677777777777664432 2 2334444444444 356888888887776543 23332 34
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005130 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (713)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 320 (713)
|.-|....++..-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+.-. .|.. .+-....+..|.+.+-+
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 55566666667777777788877753 44556778888888888877776666544 3322 11245566677777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 321 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
++|..+-..... +..+...+ +-..|++++|.+.+..+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 777665543322 23333333 345677888888877664
No 254
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.59 E-value=3.9 Score=40.50 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005130 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
.++..++..+..+|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 345555666666666666666666665443 3355566666666666666666666666554
No 255
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=7.3 Score=40.21 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005130 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
.+++.+..+|.+.+++..|+..-.+.+..+.. |...+-.-..+|...|+++.|+..|+.+.+.. +.|-.+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34556666677777777777777766665543 55555555666666777777777777766643 22333333344333
Q ss_pred HhcCCHH-HHHHHHHHHH
Q 005130 350 SNAKNWQ-KALELYEHMK 366 (713)
Q Consensus 350 ~~~g~~~-~A~~l~~~m~ 366 (713)
-+..... ...++|..|.
T Consensus 336 ~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 3333322 2345555554
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.44 E-value=8.3 Score=38.60 Aligned_cols=113 Identities=10% Similarity=-0.030 Sum_probs=58.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHH----HHHHHcCCH
Q 005130 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM----KACANAGQV 250 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll----~~~~~~g~~ 250 (713)
.|...+|-..++++.+. .+.|...++..=.+|.-.|+.+.-...++++.. ...+|...|.-+= -++..+|-+
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip---~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP---KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc---ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 45666666666666654 455666666666677777776666666666553 2344443332222 222345555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005130 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (713)
Q Consensus 251 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (713)
++|++.-++..+.+ +.|.-+-.+....+--.|++.++.+..
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 55555555544443 223333334444444445555444443
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.12 E-value=23 Score=34.42 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.+..-|.+.|.+..|..-+++|.+. .+-+. ...-.|..+|...|..++|-+.-.-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3455677777777777777777765 22222 2344456677777777777666554443
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.94 E-value=11 Score=33.03 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=10.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 005130 240 LMKACANAGQVDRAREVYKMIHKY 263 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~ 263 (713)
++.+|.+.+++++|...++...+.
T Consensus 53 l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444444444444444444443
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.91 E-value=6.1 Score=38.57 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=36.9
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHH
Q 005130 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWE 286 (713)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~ 286 (713)
+.|++..|.+.|......-.+-.-....+--|...+...|++++|..+|..+.+.-. +--+..+--|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555554432111111111233344445555555555555544443211 111233444444444444444
Q ss_pred HHHHHHHHHHHC
Q 005130 287 FACSVYDDMTKK 298 (713)
Q Consensus 287 ~A~~l~~~m~~~ 298 (713)
+|...|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 260
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=45 Score=37.43 Aligned_cols=301 Identities=13% Similarity=0.093 Sum_probs=170.6
Q ss_pred HHcCCCCCHHHHH-----HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhC
Q 005130 119 QEAGLKADCKLYT-----TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSK 191 (713)
Q Consensus 119 ~~~g~~pd~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~ 191 (713)
...|++.+..-|. .+|+-+...+.+..|.++-..+...-.. +..+|.....-+.+..+. +++++..++=.+.
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 3456666655554 4567777788888898887776522111 156666666666665322 2333333322222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Q 005130 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKACANAGQVDRAREVYKMIHKYN----- 264 (713)
Q Consensus 192 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----- 264 (713)
.. .+.++|..+.+-....|+.+-|..+++.=......+ --+..-+...+.-+.+.|+.+....++-++...-
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 12 345678888877778899999988886432221111 1122334556667777888887777776654431
Q ss_pred ------CCCCHHHHHHHHH---------HHHhcCCHHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHHhcCCHH--
Q 005130 265 ------IKGTPEVYTIAIN---------CCSQTGDWEFACSVYD--DMT----KKGVIPDEVFLSALIDFAGHAGKVE-- 321 (713)
Q Consensus 265 ------~~~~~~~~~~li~---------~~~~~g~~~~A~~l~~--~m~----~~g~~p~~~t~~~li~~~~~~g~~~-- 321 (713)
.+.....|.-++. .|-+..+. ++...|. ... ..+..|+. .....++++.....
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e 657 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFE 657 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhH
Confidence 1111122222221 11111112 2222111 100 11333332 33334444443311
Q ss_pred -HH-------HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH
Q 005130 322 -AA-------FEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (713)
Q Consensus 322 -~a-------~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 392 (713)
+| ..+.+.+..+ |......+.+--+.-+...|+..+|.++-.+.+ -||...|---+.+++..+++++
T Consensus 658 ~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 658 AKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHH
Confidence 11 1222222221 322333445555666778899999999988877 7999999999999999999988
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005130 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (713)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 435 (713)
-.++-+.++ .++-|.-...+|.+.|+.++|.+++.+.
T Consensus 734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 777665543 2466777889999999999999998654
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.66 E-value=21 Score=33.47 Aligned_cols=202 Identities=17% Similarity=0.134 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005130 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (713)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 277 (713)
..+......+...+.+..+...+...... .........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 33444444444455555554444443320 0112223334444444444455555555555544433221 111111222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005130 278 -CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (713)
Q Consensus 278 -~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 354 (713)
.+...|+++.|...|.+...... ......+......+...++.+.+...+..............+..+...+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 55666666666666666544211 112233333333455667777777777776665322135667777777777778
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 005130 355 WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (713)
Q Consensus 355 ~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (713)
++.|...+...... .|+ ...+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888777654 233 344444444555666788888877777653
No 262
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=88.37 E-value=36 Score=35.75 Aligned_cols=57 Identities=12% Similarity=0.227 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLA 221 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 221 (713)
+|...|+.-.+..-++.|..+|-+..+.| +.+++..++++|.-++ .|+...|..+|+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ife 456 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFE 456 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHH
Confidence 34444444444444555555555555444 3444444555444333 234444444444
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.33 E-value=39 Score=36.14 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005130 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 131 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
..|..++-+.|+.++|.+.|.+|.+.... -+..+...|+.++...+.+.++..++.+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34555555667777777777776653211 123355566667777777777776666654
No 264
>PRK11906 transcriptional regulator; Provisional
Probab=88.23 E-value=25 Score=37.31 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhhCC---CCC---HHHHHHHHHHHH---------hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005130 75 KAIKEAFRFFKLVP---NPT---LSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (713)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~---~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 139 (713)
-..+.|+.+|.+.. +-| ...|..+-..+. ...+..+|.++.++..+.+ +.|......+..+..-
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 35567777777654 222 333333322211 1234556777777777776 6688888888887788
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHH
Q 005130 140 SGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNALITACGQSGAVDR 215 (713)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~ 215 (713)
.++++.|..+|++....+ || ..+|....-...-+|+.++|.+.+++..+. .|.. ......+..|+.++ ++.
T Consensus 351 ~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~ 425 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKN 425 (458)
T ss_pred hcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhh
Confidence 888999999999888763 44 445555555566689999999999886654 3332 22233344666554 667
Q ss_pred HHHHHHH
Q 005130 216 AFDVLAE 222 (713)
Q Consensus 216 A~~~~~~ 222 (713)
|.++|-+
T Consensus 426 ~~~~~~~ 432 (458)
T PRK11906 426 NIKLYYK 432 (458)
T ss_pred hHHHHhh
Confidence 7776643
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.81 E-value=2.1 Score=28.93 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=9.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 005130 240 LMKACANAGQVDRAREVYKMIHK 262 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~ 262 (713)
+...|.+.|++++|.++|+...+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 266
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.09 E-value=51 Score=36.06 Aligned_cols=132 Identities=10% Similarity=0.152 Sum_probs=92.9
Q ss_pred CCcchhHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHH
Q 005130 23 HDVSEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTF 95 (713)
Q Consensus 23 ~~~~~~~~~~~~L~~~g----~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~ 95 (713)
...+.+...|..|+..+ ..+.+..++..++.. .|....+...+...=.+.|..+.+.++|++.. +-++..|
T Consensus 39 ~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW 116 (577)
T KOG1258|consen 39 SNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLW 116 (577)
T ss_pred ccchhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 33466777788888433 334455566666654 37777777777777788899999999999743 4566677
Q ss_pred HHHHHHHH-hCCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005130 96 NMLMSVCA-SSKDSEGAFQVLRLVQEA-GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 96 ~~li~~~~-~~g~~~~A~~l~~~m~~~-g~~-pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
...+..+. ..|+.+.....|+..+.. |.. .....|...|..-..++++.....+|++..+.
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 77665544 567888888888877753 221 13446777777777888999999999999864
No 267
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.06 E-value=14 Score=34.25 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH--HH
Q 005130 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP-DRVVFN--AL 203 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~--~l 203 (713)
.+..+...|.+.|+.+.|.+.|.++......+. ...+-.+|+.....+++..+.....+....--.+ |...-| ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666666666666666666655432222 2244555666666666666666555543321111 111111 11
Q ss_pred HH--HHHhcCCHHHHHHHHHHhhh
Q 005130 204 IT--ACGQSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 204 i~--~~~~~g~~~~A~~~~~~m~~ 225 (713)
.. .+...+++..|-+.|-+...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 11 12345677777777766543
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.05 E-value=2.2 Score=28.88 Aligned_cols=30 Identities=7% Similarity=-0.043 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005130 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 300 (713)
+|..+...|...|++++|.++|++..+...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 455666666777777777777777666543
No 269
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.03 E-value=24 Score=32.15 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005130 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (713)
Q Consensus 257 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 311 (713)
.+.+.+.+++++...|..+|+.+.+.|++. .+.++...++.||.......+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHH
Confidence 334445556666666666666666666543 334444455555555544444
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.57 E-value=32 Score=33.16 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=11.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Q 005130 95 FNMLMSVCASSKDSEGAFQVLRLV 118 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m 118 (713)
|.-...+|....++++|...+.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 334444444455555554444333
No 271
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.51 E-value=47 Score=35.07 Aligned_cols=400 Identities=11% Similarity=0.097 Sum_probs=217.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh----CC---C-----------CCHHHHHHHHH
Q 005130 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VP---N-----------PTLSTFNMLMS 100 (713)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~---~-----------~~~~~~~~li~ 100 (713)
.+++.....+..+.+.. |....++..-+-.+.+.+.+++|+..+.. .. + +|...=+..+.
T Consensus 59 ~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hhHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 34444444444554443 43333333333445667788888877642 11 1 12222345567
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcC--------ChhHHHHHHH-------HHHHC-----
Q 005130 101 VCASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSG--------KVDAMFEVFH-------EMVNA----- 156 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~~----pd~~~~~~li~~~~~~g--------~~~~A~~~~~-------~m~~~----- 156 (713)
.+...|++.++..+++++...=++ -+..+|+.++-.+++.= ..+-+-..|+ +|...
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y 216 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY 216 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence 788999999999999988865444 68889998777776641 1111111111 11110
Q ss_pred -CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC-
Q 005130 157 -GIEPNVHTYGALIDGCAKA--GQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEV-HPV- 230 (713)
Q Consensus 157 -g~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~pd~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~- 230 (713)
.+.|-......++....-- .+..--.+++..-...-+.|+-. +...|+..+.. +.+++..+-+.+.... ..+
T Consensus 217 ~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lk 294 (549)
T PF07079_consen 217 EKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLK 294 (549)
T ss_pred HhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHH
Confidence 1122222222222222111 11111222222223333455532 22334444443 3444444443332210 000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 005130 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-----EVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVI 301 (713)
Q Consensus 231 ~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~ 301 (713)
+.-..++..++....+.++...|.+.+..+.-.+...+. .+-..+.+..+. .-+...=+.+|+.....++.
T Consensus 295 e~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 295 EELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 112457888888999999999999988877654422110 011222333331 12234445666666665542
Q ss_pred CCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCC
Q 005130 302 PDEVFLSALID---FAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLM----GACSN---AKNWQKALELYEHMKSIKL 370 (713)
Q Consensus 302 p~~~t~~~li~---~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~~~ 370 (713)
.......++. -+-+.|. -++|+.+++.+.+-. .-|...-|.+. ..|.. ...+..-..+-+-+.+.|+
T Consensus 375 -rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 375 -RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred -HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 1122222333 2334454 788999999887753 33444433332 33332 3445666666667778888
Q ss_pred CCCHH----HHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005130 371 KPTVS----TMNALITA--LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (713)
Q Consensus 371 ~p~~~----~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 444 (713)
.|-.+ .-|.|..+ +..+|++.++.-.-..+.+ +.|+..+|..+.-+.....++++|+.++.. ++|+.
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~ 525 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNE 525 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCch
Confidence 77443 34445443 4578999999876666665 789999999998888999999999999854 57788
Q ss_pred HHHHHHH
Q 005130 445 VMFKCII 451 (713)
Q Consensus 445 ~~~~~li 451 (713)
.++++=+
T Consensus 526 ~~~dskv 532 (549)
T PF07079_consen 526 RMRDSKV 532 (549)
T ss_pred hhHHHHH
Confidence 8877765
No 272
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.41 E-value=26 Score=31.92 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=67.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005130 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (713)
Q Consensus 183 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 262 (713)
+..+.+.+.+++|+...+..++..+.+.|.+....+++.- ++-+|.......+-.+. +....+.++=-.|.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 3444555566777777777777777777776665555432 23344333332221111 122222222222222
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 263 Y-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 263 ~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
+ + ..+..+++.+...|++-+|+++.+..... +......++++..+.++...-..+++...+
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2 24556666777777777777777664322 112234455565556665554455544443
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.20 E-value=52 Score=35.28 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005130 310 LIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
+..++-+.|+.++|.+.+.+|.+.... .+..+...|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333344455555555555555443211 12234444555555555555555555544
No 274
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.11 E-value=82 Score=37.50 Aligned_cols=131 Identities=15% Similarity=0.200 Sum_probs=74.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005130 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF----AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 276 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~----~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
++.--+.|.+.+|+.++ .|+...+.-+..+ +.....+++|--.|...-+ ..-.+.+|-.
T Consensus 915 ~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~ 977 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKE 977 (1265)
T ss_pred HHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHH
Confidence 33333444455554444 3455444444433 3445566666555543211 1233566777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005130 352 AKNWQKALELYEHMKSIKLKPTVST--MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (713)
+|+|++|..+..++.. ..|... --.|+.-+...+++-+|-++..+.... | .-.+..+++...+++|.
T Consensus 978 ~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 978 CGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred hccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHH
Confidence 8888888888777752 222222 256777788888888888888776542 2 22334456666777777
Q ss_pred HHHHH
Q 005130 430 MLLSQ 434 (713)
Q Consensus 430 ~~~~~ 434 (713)
++-..
T Consensus 1047 rva~~ 1051 (1265)
T KOG1920|consen 1047 RVASK 1051 (1265)
T ss_pred HHHHh
Confidence 66543
No 275
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.05 E-value=10 Score=41.06 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCCh
Q 005130 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (713)
Q Consensus 29 ~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 108 (713)
+.-|..++-.|+++.|-.++..+.+ ..+..+..+..++|-.++|+.+- +.||- - .....+.|++
T Consensus 590 vleyqt~vmrrd~~~a~~vLp~I~k--------~~rt~va~Fle~~g~~e~AL~~s---~D~d~-r----Felal~lgrl 653 (794)
T KOG0276|consen 590 VLEYQTLVLRRDLEVADGVLPTIPK--------EIRTKVAHFLESQGMKEQALELS---TDPDQ-R----FELALKLGRL 653 (794)
T ss_pred HHHHHHHhhhccccccccccccCch--------hhhhhHHhHhhhccchHhhhhcC---CChhh-h----hhhhhhcCcH
Confidence 3344555566666666655444332 22334455555666666665542 11211 1 1223345666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005130 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 188 (713)
+.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-...
T Consensus 654 ~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 654 DIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred HHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH
Confidence 66665554332 344566666666666666666666655442 445555555566655444444444
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005130 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (713)
Q Consensus 189 ~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (713)
.+.|. .|.-.-+|...|+++++.+++.+
T Consensus 719 ~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 719 KKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred Hhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 44431 12222344555666666666544
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.95 E-value=43 Score=34.19 Aligned_cols=166 Identities=12% Similarity=0.037 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCCHH
Q 005130 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKYNI-----KGTPE 270 (713)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~ 270 (713)
.|..+.+++-+..++.+++.+-..-... .|..|- -....++..++.-.+.++++++.|+...+.-. .....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3444445555545555555544332221 122221 12223344556666677777777775543211 11235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC
Q 005130 271 VYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFL-----SALIDFAGHAGKVEAAFEILQEAKN----QGISV 337 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~-----~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~ 337 (713)
+|..|-+.|.+..++++|+-+..+..+ -++.--..-| ..+.-++...|.+.+|.+.-++..+ .|-.+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677788888888888877766554432 2222111112 2233355666777666666555433 33221
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005130 338 -GIISYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 338 -~~~~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
-......+.+.|...|+.+.|+.-|++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1233455667777788887777766654
No 277
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.67 E-value=66 Score=36.00 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHH---HHhhHHHHHHHHHhhhCCC--------CCHHHHHHHHHHHHhCC---
Q 005130 41 ISECIDLLEDMERKGLLDMDKVYHARFFNV---CKSQKAIKEAFRFFKLVPN--------PTLSTFNMLMSVCASSK--- 106 (713)
Q Consensus 41 ~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g--- 106 (713)
..+|.+.++...+.|.. ...+..-+.-. .....+++.|+.+|+.+.. -+....+-+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~--~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS--EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhcch--HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 56677777777766632 11111111111 1234566666666654321 12223344444444422
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcCCHH
Q 005130 107 --DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA----KAGQVA 179 (713)
Q Consensus 107 --~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~ 179 (713)
+.+.|..++...-+.| .|+...+-..+..... ..+...|.++|...-+.|.. .. +-.+..+|. ...+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A--~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LA--IYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HH--HHHHHHHHHhCCCcCCCHH
Confidence 4455666666666555 3343333222222222 23455666666666665522 11 111111211 123455
Q ss_pred HHHHHHHHHHhCC
Q 005130 180 KAFGAYGIMRSKN 192 (713)
Q Consensus 180 ~A~~l~~~m~~~g 192 (713)
.|..+|.+.-+.|
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 6666666665555
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.60 E-value=26 Score=35.71 Aligned_cols=127 Identities=17% Similarity=0.065 Sum_probs=78.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHH-
Q 005130 310 LIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----IKLKPTVSTMNA- 379 (713)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p~~~~~~~- 379 (713)
+-.+....+.++++++.|+...+.- ......+|.+|-..|.+..++++|.-+..+..+ .++..-..-|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4455555666778887777665431 122346788888888888888887766655432 222111122332
Q ss_pred ----HHHHHHhCCChhHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 380 ----LITALCDGDQLPKTMEVLSDMK----SLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 380 ----li~~~~~~g~~~~A~~l~~~m~----~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
|.-+|...|...+|.+.-++.. ..|-+|. ......+.+.|...|+.|.|+.-|++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 4456777888888887777643 3343332 2334456678888999999888877654
No 279
>PRK11906 transcriptional regulator; Provisional
Probab=85.51 E-value=55 Score=34.91 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=10.1
Q ss_pred hcCCHHHHHHHHHHHHH
Q 005130 37 RQGRISECIDLLEDMER 53 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~ 53 (713)
+.|++-.-.++++.+..
T Consensus 46 n~grVVSRdeLle~VWg 62 (458)
T PRK11906 46 SAGHVVLKDMIIESVWK 62 (458)
T ss_pred CCCceEcHHHHHHHhcC
Confidence 45666566666666654
No 280
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.29 E-value=65 Score=36.54 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=34.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH---
Q 005130 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN--- 246 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~--- 246 (713)
..+.-.|+++.|++.+-+ ..+...|.+.+...+.-|+-.+-.+... ..+.....+ .|...-+..||..|++
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~-~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPG-DPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCC-CCCCcCHHHHHHHHHHHHh
Confidence 344456777777777665 1222445555554444333221111111 111111001 1112456677777765
Q ss_pred cCCHHHHHHHHHHHHhc
Q 005130 247 AGQVDRAREVYKMIHKY 263 (713)
Q Consensus 247 ~g~~~~A~~~~~~m~~~ 263 (713)
..++.+|.++|-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 34566777766655544
No 281
>PRK09687 putative lyase; Provisional
Probab=84.68 E-value=46 Score=33.39 Aligned_cols=234 Identities=14% Similarity=0.057 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHCCCCCCHH
Q 005130 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEPNVH 163 (713)
Q Consensus 88 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~ 163 (713)
.++|.......+.++...|..+ +...+..+.. .+|...-...+.+++..|+. +++...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 3566666666666666665432 3333333332 34555666666667776653 3456666555332 45555
Q ss_pred HHHHHHHHHHHcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 005130 164 TYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (713)
Q Consensus 164 ~~~~li~~~~~~g~~-----~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~ 238 (713)
+-...+.++...+.. ..+...+..... .++..+-...+.++++.++ +++...+..+.. .+|..+-.
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~VR~ 177 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGDVRN 177 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHHHHH
Confidence 555555555554321 223333333222 2244444455566666655 344455444443 23333444
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005130 239 ALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (713)
Q Consensus 239 ~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 317 (713)
..+.++.+.+ +-..+...+..+.. .++..+-...+.++.+.++. .|+..+-+..+.+. .....+.+++..
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~i 248 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhc
Confidence 4444444432 12334444433332 23445556666666666653 44444444444322 123455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005130 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (713)
Q Consensus 318 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 348 (713)
|.. +|...+..+.+.. +|..+-...+.+
T Consensus 249 g~~-~a~p~L~~l~~~~--~d~~v~~~a~~a 276 (280)
T PRK09687 249 GDK-TLLPVLDTLLYKF--DDNEIITKAIDK 276 (280)
T ss_pred CCH-hHHHHHHHHHhhC--CChhHHHHHHHH
Confidence 553 4555555555432 244444433333
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.64 E-value=25 Score=31.58 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=25.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC
Q 005130 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (713)
+.+..+++..++..|.-.. |........-...+...|++.+|+++|+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4556666666666555433 4444333333444445555555555555443
No 283
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=84.43 E-value=58 Score=34.31 Aligned_cols=386 Identities=12% Similarity=0.106 Sum_probs=193.7
Q ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005130 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (713)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 134 (713)
|.+..-...+++.+..++..++..+.++++..|-+ .+|..-+++=...+++.....+|.+.....+. ...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 67777777788888889999999999998876643 47888888877788999999999888876444 44555555
Q ss_pred HHHHHcCCh------hHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhCCCCCCH
Q 005130 135 TTCAKSGKV------DAMFEVFHEMVN-AGIEPN-VHTYGALIDGCA---------KAGQVAKAFGAYGIMRSKNVKPDR 197 (713)
Q Consensus 135 ~~~~~~g~~------~~A~~~~~~m~~-~g~~~~-~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~pd~ 197 (713)
+--.+.+.. ....+.|+-... .+++|- ...|+..+...- .+.+++...+.|.+|...-+.-=.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 544333211 122234444333 344443 334554443322 233456666677777654211111
Q ss_pred HHHHH------HH-HHHHh--cC----CHHHHHHHHHHhhhCCCCCCC----CHHHHH-----------HHHHHHHHc--
Q 005130 198 VVFNA------LI-TACGQ--SG----AVDRAFDVLAEMNAEVHPVDP----DHITIG-----------ALMKACANA-- 247 (713)
Q Consensus 198 ~~~~~------li-~~~~~--~g----~~~~A~~~~~~m~~~~~~~~p----d~~~~~-----------~ll~~~~~~-- 247 (713)
..|+- =+ ++-++ .| -+-.|.+.+++...-..|+.. +..+++ ..|+.-...
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 11211 11 11111 01 134555555554332222211 111111 122211111
Q ss_pred ---CC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------H----
Q 005130 248 ---GQ--VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--------------E---- 304 (713)
Q Consensus 248 ---g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~---- 304 (713)
|+ .....-+|++.... +...+.+|----..+...++-+.|+.....-... .|. .
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~lse~yel~nd~e~v~ 353 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMFLSEYYELVNDEEAVY 353 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchheeHHHHHhhcccHHHHh
Confidence 11 11111222222221 1222344444444444555555555554432221 111 0
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHH------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH
Q 005130 305 VFLSALIDFAGH---AGKVEAAFEI------LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTV 374 (713)
Q Consensus 305 ~t~~~li~~~~~---~g~~~~a~~~------~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~ 374 (713)
.+|..++..+.+ .++.+.+... ..++.-+....-..+|..+++.-.+..-++.|+.+|-+..+.+ +.+++
T Consensus 354 ~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~v 433 (660)
T COG5107 354 GCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHV 433 (660)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcce
Confidence 011112211111 1111111100 0110000001124567777877777778888888888888777 56788
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 005130 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCII 451 (713)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li 451 (713)
..++++|.-++. |+..-|..+|+--... .||...| .-.+.-+...++-+.|+.+|+..+.. +..+ ..+|..+|
T Consensus 434 yi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi 509 (660)
T COG5107 434 YIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMI 509 (660)
T ss_pred eeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHH
Confidence 888888887764 6677788888763332 4554443 35566667778888888888755432 1122 34566666
Q ss_pred H
Q 005130 452 G 452 (713)
Q Consensus 452 ~ 452 (713)
+
T Consensus 510 ~ 510 (660)
T COG5107 510 E 510 (660)
T ss_pred H
Confidence 4
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.98 E-value=42 Score=32.35 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=5.5
Q ss_pred cCCHHHHHHHHHH
Q 005130 282 TGDWEFACSVYDD 294 (713)
Q Consensus 282 ~g~~~~A~~l~~~ 294 (713)
..++..|.+.++.
T Consensus 203 ~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 203 AHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHHHHHhcc
Confidence 3344444444443
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.96 E-value=12 Score=34.69 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005130 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (713)
.+..+...|++.|+.+.|++.|.++......+. ...+-.+|......+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555556666666666666666554432222 2233445555555555555555554443
No 286
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.32 E-value=32 Score=32.90 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=10.1
Q ss_pred hcCCHHHHHHHHHHHHhCCC
Q 005130 351 NAKNWQKALELYEHMKSIKL 370 (713)
Q Consensus 351 ~~g~~~~A~~l~~~m~~~~~ 370 (713)
..+++.+|.++|++.....+
T Consensus 166 ~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555554433
No 287
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.15 E-value=16 Score=36.32 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005130 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (713)
Q Consensus 303 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 377 (713)
...+...++..-....+++++...+-.++... ..+ +.+++-.++. .-+.++++.++..=.+.|+-||..++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhhH
Confidence 34444445544444555666666555554331 111 1222222221 12445566665555556666666666
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 378 NALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
+.+|+.+.+.+++.+|.++.-.|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666555543
No 288
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=82.74 E-value=48 Score=37.22 Aligned_cols=147 Identities=10% Similarity=0.102 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005130 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (713)
Q Consensus 289 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 368 (713)
....+.+...-...+.....-++..|.+.|..+.|.++.+.+-.+-. ...-|..-+..+.++|+......+-+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll-- 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL-- 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 33444444433334666677788888888888888888776644321 12345555556666666655555444443
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005130 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CERKDDVEVGLMLLSQAKEDGVIPNLV 445 (713)
Q Consensus 369 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a---~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (713)
..|+..|... ..++.+.+....+..+.-+|-+.+.= ..+.|+..+|.+.+-.+.+.++.|...
T Consensus 466 -------------~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 466 -------------EEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------HHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 2333333211 11111111111011111122111111 123477777777777777777778777
Q ss_pred HHHHHHHH
Q 005130 446 MFKCIIGM 453 (713)
Q Consensus 446 ~~~~li~~ 453 (713)
-...|.++
T Consensus 532 ~~~LL~d~ 539 (566)
T PF07575_consen 532 WPLLLCDA 539 (566)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 66666554
No 289
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=82.67 E-value=33 Score=30.18 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=43.4
Q ss_pred HHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005130 101 VCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
...+.|++++|.+.|+.+..+-. +-...+.-.|+.+|.+.+++++|...+++.++....--..-|-..+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34556777777777777766521 112344556777777777777777777777765432222344444555443
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=82.53 E-value=3 Score=26.71 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 005130 165 YGALIDGCAKAGQVAKAFGAYGI 187 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~ 187 (713)
|+.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555666666666665555
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.45 E-value=37 Score=30.55 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=23.9
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005130 103 ASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
.+.++.+.+..++..+.-. .|.. .++. ...+...|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFD--GWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555555433 2221 1222 22234556666666666665544
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.37 E-value=15 Score=36.63 Aligned_cols=101 Identities=14% Similarity=0.198 Sum_probs=74.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005130 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (713)
Q Consensus 334 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (713)
|.+....+...++..-.....++.+...+-++.... ..|+ ..+|- -++-.-++++++.++..=+.-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~i----rlllky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWI----RLLLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHH----HHHHccChHHHHHHHhCcchhccccc
Confidence 445555666666666666778899998888876531 1122 22332 23334578899999999899999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 409 TITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.+|++.+++.+.+.+++.+|.++.-.|+..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999888777654
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=82.26 E-value=2.9 Score=26.79 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=12.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHH
Q 005130 377 MNALITALCDGDQLPKTMEVLSD 399 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~ 399 (713)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.20 E-value=17 Score=32.04 Aligned_cols=65 Identities=9% Similarity=0.005 Sum_probs=43.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCC-HHHHHHHHHHHH
Q 005130 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNMLMSVCA 103 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 103 (713)
..++++++..+++.|.-.. |....+...-...+...|++++|+++|+.+.... ...|..-+.++|
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 5788888888888887654 6666666656667777888888888888776432 334444444333
No 295
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.78 E-value=27 Score=28.57 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 005130 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~ 455 (713)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+-++.. |-. ...|..++.-+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqElk 90 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQELK 90 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHHh
Confidence 55666777777889999999999999999999999999999988754 433 338888886543
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.33 E-value=46 Score=30.29 Aligned_cols=124 Identities=18% Similarity=0.185 Sum_probs=70.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH--HHHhcCC
Q 005130 244 CANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV-FLSALID--FAGHAGK 319 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~--~~~~~g~ 319 (713)
.++.+..++|+.-|..+.+.|...-+.. --.+.....+.|+-..|...|++.-.....|-.. -...|=. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3556666777777777777665332221 1223344556677777777777776655445433 1112212 2345666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005130 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 320 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
+++.....+.+...+-+.....-.+|.-+-.|.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 766666665555444344444455666666677777777777777654
No 297
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.75 E-value=1.1e+02 Score=34.27 Aligned_cols=180 Identities=15% Similarity=0.094 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHHcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHc
Q 005130 108 SEGAFQVLRLVQEAGLKADCKLYTTLITT-----CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKA 175 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 175 (713)
...|.+.++...+.| +......+..+ ++...+++.|+..|..+.+ .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888877766 33333333322 3455788889988888876 44 333455666666663
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH----
Q 005130 176 G-----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA---- 245 (713)
Q Consensus 176 g-----~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~---- 245 (713)
. +.+.|+.+|.+.-..| .|+....-..+..... ..+...|.++|...... |. ++ .+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~-~~--A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GH-IL--AIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CC-hH--HHHHHHHHHHhCCC
Confidence 3 5677888888888777 4555544433333333 34577888888877654 21 22 2222222221
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005130 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (713)
Q Consensus 246 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 301 (713)
-..+.+.|..+++...+.| .+....-...+..+.. +.++.+...+..+.+.|..
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 2236778888888888777 3222222223333344 6777777777776666543
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.02 E-value=4.6 Score=25.19 Aligned_cols=27 Identities=11% Similarity=0.023 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 376 TMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555555444
No 299
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.29 E-value=39 Score=29.84 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005130 377 MNALITALCDGDQLPKTMEVLSDMKSLG-----LCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCI 450 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~l 450 (713)
.|+++.-.+..+.+.-.+.+++.+.... -.-+..+|.+++.+.++..- ---+..+|+-+.+.+.+++...|.+|
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555665555555553210 02344568888888766665 44567778888877788888888888
Q ss_pred HHHHHh
Q 005130 451 IGMCSR 456 (713)
Q Consensus 451 i~~~~r 456 (713)
|..|.|
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 888765
No 300
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.83 E-value=37 Score=27.72 Aligned_cols=81 Identities=11% Similarity=0.063 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005130 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (713)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 117 (713)
....+||-.+-+.+...+ .....+...-+......|++++|..+.+..+.||...|-+|-. .+.|..+.+..-+.+
T Consensus 18 ~HcHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred chHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 446678888888887765 2233333333445667788999998888888888888877644 345555656666666
Q ss_pred HHHcC
Q 005130 118 VQEAG 122 (713)
Q Consensus 118 m~~~g 122 (713)
|-..|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 66655
No 301
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=77.66 E-value=81 Score=31.61 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=88.4
Q ss_pred HhCCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHC--------CCCCCH----
Q 005130 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSGKVDAMFEVFHEMVNA--------GIEPNV---- 162 (713)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g--~~pd~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~---- 162 (713)
.+.|+++.|..++.+....- ..|+. ..|+.-...+.+..+++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 34567777777776665432 22321 23443334433333788877777665432 123333
Q ss_pred -HHHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 005130 163 -HTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (713)
Q Consensus 163 -~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~ 238 (713)
.+...++.+|...+..+ +|..+.+.+.... .-...++..-+..+.+.++.+++.+.+.+|... +.-....+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~---~~~~e~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS---VDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh---cccccchHH
Confidence 36677888888877654 5666666775542 222455555667777789999999999999874 221223344
Q ss_pred HHHHHH---HHcCCHHHHHHHHHHHHhcCCCC
Q 005130 239 ALMKAC---ANAGQVDRAREVYKMIHKYNIKG 267 (713)
Q Consensus 239 ~ll~~~---~~~g~~~~A~~~~~~m~~~~~~~ 267 (713)
..+..+ .... ...|...++.+....+.+
T Consensus 160 ~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 160 SILHHIKQLAEKS-PELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCC
Confidence 444433 3332 334445554444433333
No 302
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=76.93 E-value=11 Score=29.78 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=36.7
Q ss_pred eccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccCCccceeccCCchhhhhhhhhhHHHHHHHHHhCCCCCC
Q 005130 579 VDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQG 656 (713)
Q Consensus 579 ~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 656 (713)
+|+|+++...|..++...|+....+ + .... .+++|.|.|+... .++.+|...|++ +.++..
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~~----~-~~~~---------~II~G~G~hS~~g--~Lk~~V~~~L~~-~~~~~~ 61 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQR----G-IREL---------RIITGKGNHSKGG--VLKRAVRRWLEE-GYQYEE 61 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHHT----T-HSEE---------EEE--STCTCCTS--HHHHHHHHHHHH-THCCTT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHc----C-CCEE---------EEEeccCCCCCCC--cHHHHHHHHHHh-hhccch
Confidence 5889999988877765566555422 2 1222 3557888776322 389999999988 655553
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=76.46 E-value=3.5 Score=26.07 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 005130 266 KGTPEVYTIAINCCSQTGDWEFAC 289 (713)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~ 289 (713)
+.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344555555555555555555553
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.40 E-value=37 Score=31.52 Aligned_cols=118 Identities=9% Similarity=0.052 Sum_probs=72.1
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC-CCCHHHHHHH-----HHHHHhCCChH
Q 005130 37 RQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNML-----MSVCASSKDSE 109 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l-----i~~~~~~g~~~ 109 (713)
..+.. +.....+.+...+. -.........+.+.....+++++|..-++... .+.-..+-.+ .+.....|.++
T Consensus 65 ~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 65 QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKAD 143 (207)
T ss_pred hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444 56666666665552 12233334445566777788888888877543 3333333333 34567778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005130 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 157 (713)
+|+.+++.....+. .......-.+.+...|+-++|+.-|+.....+
T Consensus 144 ~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 144 AALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 88888876665432 22223344567778888888888888877764
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.36 E-value=24 Score=32.98 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 005130 268 TPEVYTIAINCCSQTGDWEFA 288 (713)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A 288 (713)
|+..+.+|++.|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 444444444444444444444
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.31 E-value=33 Score=37.42 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=50.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005130 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~ 252 (713)
.+.|+++.|.++..+.. +..-|..|-.+..+.+++..|.+.|.... -|..|+-.+...|+-+.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----------d~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR-----------DLGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc-----------chhhhhhhhhhcCChhH
Confidence 35566666655544432 34556666666666666666666655432 13344445555555554
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005130 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (713)
Q Consensus 253 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (713)
...+-....+.|. .|.-.-+|...|+++++++++.+
T Consensus 711 l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 711 LAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444444331 22233344555666666555543
No 307
>PRK09687 putative lyase; Provisional
Probab=75.33 E-value=94 Score=31.19 Aligned_cols=137 Identities=11% Similarity=-0.044 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005130 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLM 346 (713)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li 346 (713)
+..+-...+.++.+.++ .++...+-.+... +|...-...+.++++.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 34444555555555554 3455555555442 23333333344444332 12344444444442 33555566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005130 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (713)
Q Consensus 347 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 420 (713)
.++.+.|+. .|...+-...+. ++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666663 344444333332 22 123455666666664 566666666542 345555444444443
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.33 E-value=27 Score=32.70 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHH
Q 005130 337 VGIISYSSLMGACSNAKNWQKA 358 (713)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A 358 (713)
+|+..+.+|...|.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444444444433
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.04 E-value=1.9e+02 Score=34.64 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005130 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (713)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 290 (713)
++++.|+.-+.++.. + .|.-.++.--+.|.+.+|..++..=.+.. ..+|.+....+.....+++|.-
T Consensus 894 ~ry~~AL~hLs~~~~---~------~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~----k~i~~~ya~hL~~~~~~~~Aal 960 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE---T------YFPECKNYIKKHGLYDEALALYKPDSEKQ----KVIYEAYADHLREELMSDEAAL 960 (1265)
T ss_pred HHHHHHHHHHHHcCc---c------ccHHHHHHHHhcccchhhhheeccCHHHH----HHHHHHHHHHHHHhccccHHHH
Confidence 456777766665531 1 22333444456677777777664221111 1455555566666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005130 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (713)
Q Consensus 291 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 370 (713)
.|+..-+ ..-.+.+|..+|++.+|+.+..++.... .--..+--.|+.-+...++.-+|-++..+..+
T Consensus 961 ~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s--- 1027 (1265)
T KOG1920|consen 961 MYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLS--- 1027 (1265)
T ss_pred HHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---
Confidence 6665322 2334567777788888888777654321 00112225666677777777777777666553
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005130 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 371 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
.| .-.+..|++...+++|+.+-..-.
T Consensus 1028 d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1028 DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 12 223445666667777777665443
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.84 E-value=44 Score=27.12 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 005130 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 454 (713)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~ 454 (713)
+.-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+-.+. .|. +...|..+++-.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHHH
Confidence 3346667777777788999999999999999999999999999998874 343 556788887654
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=71.94 E-value=9.8 Score=23.61 Aligned_cols=28 Identities=29% Similarity=0.113 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
.+|..+..++...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4678888999999999999999999987
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=71.93 E-value=9 Score=24.97 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHH
Q 005130 376 TMNALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
+++.|...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555555555555555543
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.78 E-value=9.1 Score=23.61 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=11.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 377 MNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
|..+...|...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344444444555555555444443
No 314
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=71.74 E-value=33 Score=27.78 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (713)
Q Consensus 287 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 331 (713)
++.+-++.+....+.|+.....+.+.+|.+.+++..|.++++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555555444
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.70 E-value=1.2 Score=39.67 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=54.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005130 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (713)
Q Consensus 345 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (713)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++.+++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555666667777777777777655455677778888888888777777776651 122333456777777787
Q ss_pred HHHHHHHHHHH
Q 005130 425 VEVGLMLLSQA 435 (713)
Q Consensus 425 ~~~a~~~~~~m 435 (713)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77777766553
No 316
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.48 E-value=1.5e+02 Score=31.93 Aligned_cols=181 Identities=12% Similarity=0.092 Sum_probs=127.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005130 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (713)
-|-...-+++..+..+....-...+..+|..-| -+-..|..++.+|... ..+.-..+++++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355667788899999989999999999999875 3566788999999888 668888999999887544 555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 005130 170 DGCAKAGQVAKAFGAYGIMRSKNVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~~~g~~-----pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~ 244 (713)
.-|-+ ++...+...|.+....=++ .-...|..|...- ..+.+..+.+...+... .|...-.+.+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHh
Confidence 66666 8888899999888754221 1123565555432 24567777777666543 34455566677777888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005130 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (713)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 279 (713)
....++++|.+++..+.+.+- .|.-.-..+|..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 999999999999998887762 3333333444433
No 317
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=70.56 E-value=6.1 Score=24.96 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHcCChh
Q 005130 129 LYTTLITTCAKSGKVD 144 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~ 144 (713)
+|+.+...|...|+++
T Consensus 15 a~~nla~~~~~~g~~~ 30 (34)
T PF13431_consen 15 AYNNLANLYLNQGDYE 30 (34)
T ss_pred HHHHHHHHHHHCcCHH
Confidence 3333333333333333
No 318
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.22 E-value=1.1e+02 Score=29.88 Aligned_cols=168 Identities=13% Similarity=0.084 Sum_probs=93.0
Q ss_pred CCCcchhHHHHHHHH-hcCCHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---------C
Q 005130 22 AHDVSEQLHSYNRLI-RQGRISECIDLLEDMERKGLL--DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---------N 89 (713)
Q Consensus 22 ~~~~~~~~~~~~~L~-~~g~~~~A~~l~~~m~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~ 89 (713)
..++.....-||.-. +....++|+.-|++..+.... .|+.......+++..+.+++++....|.++. +
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 344554455555433 677999999999998764311 3444444555666677777887777776542 2
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CC-
Q 005130 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA----G-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI- 158 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 158 (713)
-+..+.|+++...+.+.+.+--...++.-.+. . -..--.|-+.|...|...+.+....+++.++.+. |-
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 34456777777666666555444444322211 0 0000112234555566666666666666665432 10
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005130 159 -----EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 159 -----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
..=...|..=|.+|....+-.+-..+|++..
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 0112355566666666666666666666554
No 319
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.59 E-value=54 Score=26.80 Aligned_cols=87 Identities=18% Similarity=0.092 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 005130 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (713)
Q Consensus 320 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (713)
.++|..|-+.+...+-. ...+--.-+..+.+.|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34454454444443311 22222223345667788888877766653 678877766643 356666666666666
Q ss_pred HHHCCCCCCHHHHHH
Q 005130 400 MKSLGLCPNTITYSI 414 (713)
Q Consensus 400 m~~~g~~p~~~t~~~ 414 (713)
|..+| .|...+|..
T Consensus 94 la~sg-~p~lq~Faa 107 (115)
T TIGR02508 94 LAASG-DPRLQTFVA 107 (115)
T ss_pred HHhCC-CHHHHHHHH
Confidence 66665 455555543
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=69.36 E-value=12 Score=24.36 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 270 EVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555566666666666666665543
No 321
>PRK11619 lytic murein transglycosylase; Provisional
Probab=67.46 E-value=2.3e+02 Score=32.37 Aligned_cols=360 Identities=9% Similarity=0.000 Sum_probs=183.7
Q ss_pred CCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH------------------HhhHHHHHHHHH
Q 005130 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC------------------KSQKAIKEAFRF 83 (713)
Q Consensus 22 ~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~------------------~~~~~~~~A~~~ 83 (713)
|.+..-.+..+.++...|+-++|.+....+-..|... ...+ ..++... ...|+...|..+
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~-p~~c-d~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l 203 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL-PNAC-DKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYL 203 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-ChHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5566666777788888898888888888877666321 1111 1122222 223334444444
Q ss_pred hhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHCC-CCC
Q 005130 84 FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA--KSGKVDAMFEVFHEMVNAG-IEP 160 (713)
Q Consensus 84 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g-~~~ 160 (713)
...+++........++..... ...+..++.. ++++...-..++.++. ...+.+.|..++....... ..+
T Consensus 204 ~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~ 275 (644)
T PRK11619 204 AKQLPADYQTIASALIKLQND---PNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNE 275 (644)
T ss_pred HHhcChhHHHHHHHHHHHHHC---HHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCH
Confidence 444422112222233332222 2222221111 1223222121222222 2356688888888774432 222
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 005130 161 N--VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (713)
Q Consensus 161 ~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~ 238 (713)
. ..++..+....+..+...+|...++...... .|......-+....+.++++.+...+..|.... .-...-.-
T Consensus 276 ~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~---~~~~rw~Y 350 (644)
T PRK11619 276 DQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA---KEKDEWRY 350 (644)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh---ccCHhhHH
Confidence 2 2234444444444433566777777654332 244444555555568889999888888886532 22223333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005130 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW-EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (713)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 317 (713)
-+..++...|+.++|...|+.+... .+|-.++.+- +.|.. .-....... ....+..+ .-..-+..+...
T Consensus 351 W~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa~-~Lg~~~~~~~~~~~~-~~~~~~~~--~~~~ra~~L~~~ 420 (644)
T PRK11619 351 WQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAAQ-RLGEEYPLKIDKAPK-PDSALTQG--PEMARVRELMYW 420 (644)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHHH-HcCCCCCCCCCCCCc-hhhhhccC--hHHHHHHHHHHC
Confidence 4556666789999999999887432 1232222211 11211 000000000 00000000 112234456677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhCCChhH
Q 005130 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKLKPTVSTMNALITALCDGDQLPK 392 (713)
Q Consensus 318 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~ 392 (713)
|....|...+..+.+. .+......+...-.+.|..+.+......... .. -|. .|...+..+++.-.++.
T Consensus 421 g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~r-fp~--~~~~~~~~~a~~~~v~~ 494 (644)
T PRK11619 421 NMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEER-FPL--AWNDEFRRYTSGKGIPQ 494 (644)
T ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHh-CCc--chHHHHHHHHHHcCCCH
Confidence 8888888888877764 2444555666666677887777766543321 11 122 47777888877777777
Q ss_pred HHHHHHHHHHCCCCCCHHHH
Q 005130 393 TMEVLSDMKSLGLCPNTITY 412 (713)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~ 412 (713)
++-.---..++++.|+..+-
T Consensus 495 ~lv~ai~rqES~f~p~a~S~ 514 (644)
T PRK11619 495 SYAMAIARQESAWNPKARSP 514 (644)
T ss_pred HHHHHHHHHhcCCCCCCccC
Confidence 76544445577888887654
No 322
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.70 E-value=93 Score=27.55 Aligned_cols=81 Identities=14% Similarity=0.216 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005130 342 YSSLMGACSNAKNWQKALELYEHMKSIK-----LKPTVSTMNALITALCDGDQ-LPKTMEVLSDMKSLGLCPNTITYSIL 415 (713)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~l~~~m~~~~-----~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (713)
.|.++.-.+..+++.-...+++.+.... -..+..+|++++.+..+..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555443210 03455678888888866665 34567788888888888899999999
Q ss_pred HHHHHhc
Q 005130 416 LVACERK 422 (713)
Q Consensus 416 l~a~~~~ 422 (713)
+.+|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 9888775
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=66.64 E-value=28 Score=28.46 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=20.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 288 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
..+-+..+....+.|+.....+.+.+|.+.+++..|.++++-++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555554443
No 324
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=65.15 E-value=40 Score=34.05 Aligned_cols=105 Identities=13% Similarity=0.020 Sum_probs=64.4
Q ss_pred HHhhHHHHHHHHHhhhCC--CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 005130 71 CKSQKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (713)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 147 (713)
+.++|.+++|+..|.... .| |.+++..-..+|.+..++..|..-....+..+ ..-...|+.-+.+-...|+..+|.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456777888887776432 33 77777777777777777776666555554332 112335565566656668888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005130 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (713)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (713)
+-++...+. +|+. +-|=..|.....+.++
T Consensus 186 kD~E~vL~L--EP~~---~ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 186 KDCETVLAL--EPKN---IELKKSLARINSLRER 214 (536)
T ss_pred HhHHHHHhh--Cccc---HHHHHHHHHhcchHhh
Confidence 888888775 5552 2333444444445444
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.01 E-value=42 Score=31.80 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=21.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005130 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (713)
Q Consensus 169 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 220 (713)
++.+.+.+++.+|+...++-++.. +.|.-+-..++..+|-.|++++|..-+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql 58 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQL 58 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHH
Confidence 334444444444444444433331 223333334444444444444444333
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.86 E-value=1e+02 Score=27.39 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=26.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005130 104 SSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 104 ~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
..++++++..++..|.-. .|+ ..++-.. .+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 356666666666665543 232 2233322 234566677777777766654
No 327
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=64.14 E-value=2.6 Score=37.37 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=22.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005130 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (713)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 186 (713)
+.+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444443333344444444444444444444444433
No 328
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.90 E-value=1.6e+02 Score=29.37 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005130 284 DWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGH-AG-KVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKAL 359 (713)
Q Consensus 284 ~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~-~g-~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 359 (713)
...+|+++|+.... ..+.-|......++..... .+ ....-.++.+.+... +-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34567777774322 2344567777777776654 22 222233444444433 34677778888888889999998888
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 005130 360 ELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (713)
Q Consensus 360 ~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (713)
++++..... +...|...|...|......|+..-..++..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888876644 4456778888888888888887666555544
No 329
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.36 E-value=2.7e+02 Score=31.68 Aligned_cols=191 Identities=17% Similarity=0.209 Sum_probs=104.7
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHH-hhHHHHHHHHHhhhCC----CCCHH-----H
Q 005130 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCK-SQKAIKEAFRFFKLVP----NPTLS-----T 94 (713)
Q Consensus 27 ~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~----~~~~~-----~ 94 (713)
..+..|..|++ .|+..++-+.+..-.|+ ...++..++.++. .-.++++|...+.+.. +++.. .
T Consensus 28 ~~l~~Y~kLI~-----~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~ 102 (608)
T PF10345_consen 28 EQLKQYYKLIA-----TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRC 102 (608)
T ss_pred hhHHHHHHHHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 44455555544 46777777774333333 3445555666554 3456788888776531 22221 1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHH
Q 005130 95 FNMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYG 166 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~pd~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~ 166 (713)
-..++..+.+.+... |...++..++.- ..+-...|..+ +..+...+++..|.+.++.+...- ..|-..++-
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 234455566655555 888887766532 22223344444 333333478888998888876542 234445555
Q ss_pred HHHHHHH--HcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHh
Q 005130 167 ALIDGCA--KAGQVAKAFGAYGIMRSKN---------VKPDRVVFNALITACG--QSGAVDRAFDVLAEM 223 (713)
Q Consensus 167 ~li~~~~--~~g~~~~A~~l~~~m~~~g---------~~pd~~~~~~li~~~~--~~g~~~~A~~~~~~m 223 (713)
.++.+.. +.+..+++.+...++.... ..|-..+|..+++.++ ..|+++.+.+.++++
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555544 3455666777776663321 1344566777776554 456666665554443
No 330
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=63.17 E-value=20 Score=21.98 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=7.4
Q ss_pred HHHHHHcCChhHHHHHHHHH
Q 005130 134 ITTCAKSGKVDAMFEVFHEM 153 (713)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m 153 (713)
...+...|++++|++.|++.
T Consensus 8 g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 8 GQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 33333334444444444333
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.68 E-value=1.7e+02 Score=29.20 Aligned_cols=59 Identities=10% Similarity=-0.015 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 331 (713)
.+.....|..+|.+.+|..+.+..+..+.- +...+-.++..++..|+--.+.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556677777777777777776665433 56666777777777777666655555543
No 332
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.26 E-value=1.7e+02 Score=31.23 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=19.1
Q ss_pred HHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005130 292 YDDMTKKGVIPDEVFL---SALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339 (713)
Q Consensus 292 ~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 339 (713)
.+.+.+.|..|+...- .+++...+..|..+ +.+.+.+.|..++.
T Consensus 184 v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 184 CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 3444455555543221 23333334445543 33444455655543
No 333
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.33 E-value=1.5e+02 Score=27.75 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=37.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005130 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-----ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (713)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~-----~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 279 (713)
..+...+++++|..-++..... |....+. .|.......|.+|+|...++.....+.. ......-.+.+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~-----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ-----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc-----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 3445555566665555544321 1111121 1223444455555555555544433221 01112223444
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 005130 280 SQTGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 280 ~~~g~~~~A~~l~~~m~~~g 299 (713)
...|+-++|..-|.+.+..+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 55555555555555554443
No 334
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.37 E-value=43 Score=28.88 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=36.0
Q ss_pred cchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhh
Q 005130 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85 (713)
Q Consensus 25 ~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 85 (713)
...++..|-.+++. .+++.++|..|..+|+....+.++...+..+...|++++|.++|.
T Consensus 65 D~RylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 65 DERYLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp -HHHHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555566555542 237777777777777665566666666666666666777666665
No 335
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.70 E-value=2e+02 Score=28.74 Aligned_cols=118 Identities=13% Similarity=0.162 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cCC-HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 005130 175 AGQVAKAFGAYGIMRS-KNVKPDRVVFNALITACGQ-SGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~-~g~~pd~~~~~~li~~~~~-~g~-~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~ 251 (713)
+..+.+|+++|+.... ..+--|..+...+++.... .+. ...-.++.+-+... .+-.++..+...++..+++.+++.
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t-~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVST-FSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhc-cccCCChhHHHHHHHHHHhcccHH
Confidence 3345566666663221 2234455555556655544 221 11222222222221 233455556666666666666666
Q ss_pred HHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 252 RAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (713)
Q Consensus 252 ~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 293 (713)
.-.++++..... +...|...|..+|....+.|+..-..++.+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 666666655443 334455666666666666666654444443
No 336
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.38 E-value=3.4e+02 Score=31.01 Aligned_cols=50 Identities=4% Similarity=-0.104 Sum_probs=31.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005130 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (713)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (713)
+..+...|...+|...+..+... .+......+.......|..+.++....
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 44566778888888888777663 344444455555556677776665554
No 337
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.38 E-value=2.1e+02 Score=28.58 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
++..+...|..+|.+.+|.++.+.....+ +.+...+-.|+..++..|+--+|.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455566777777777777777766654 4556666777777777777666665555554
No 338
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.09 E-value=3.7e+02 Score=31.30 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=47.5
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHh
Q 005130 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (713)
Q Consensus 26 ~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (713)
.+--..|+.++..|+++.|+++-..- |.. ..+...-+.++.+.+.+..|-+++.++ ..+|..+.--+..
T Consensus 359 dE~R~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~ 428 (911)
T KOG2034|consen 359 DEARDVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLE 428 (911)
T ss_pred cchHHHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHh
Confidence 45567799999999999999876433 211 122223345566667777777777665 3445444444455
Q ss_pred CCChHHHHHHH
Q 005130 105 SKDSEGAFQVL 115 (713)
Q Consensus 105 ~g~~~~A~~l~ 115 (713)
..+.+ ++..|
T Consensus 429 ~~~~~-~L~~~ 438 (911)
T KOG2034|consen 429 INQER-ALRTF 438 (911)
T ss_pred cCCHH-HHHHH
Confidence 55544 44443
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=56.67 E-value=69 Score=30.41 Aligned_cols=56 Identities=13% Similarity=0.031 Sum_probs=27.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005130 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (713)
Q Consensus 97 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 153 (713)
..++.+.+.+++.+|+...+.-++.. +.|..+-..+++.|+-.|++++|..-++-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33444555555555555555444442 334444445555555555555555444433
No 340
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.46 E-value=4e+02 Score=31.46 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHH-H---HHHH-HHHHHhhHHHHHHHHHhhhCC
Q 005130 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKV-Y---HARF-FNVCKSQKAIKEAFRFFKLVP 88 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~-~---~~~l-~~~~~~~~~~~~A~~~~~~~~ 88 (713)
.-...|+...++++|+.+.+.....+ |.... + +... +-....++++++|.+.|..+.
T Consensus 312 ~qi~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 312 KQIQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 33456778888999999988776654 33221 1 1111 122456788999999998764
No 341
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=56.28 E-value=2.2e+02 Score=28.54 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=36.8
Q ss_pred HhcCCHHHHHHHHH-HHHHCCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005130 280 SQTGDWEFACSVYD-DMTKKGVIPDE----VFLSALIDFAGHAGKVE-AAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (713)
Q Consensus 280 ~~~g~~~~A~~l~~-~m~~~g~~p~~----~t~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 353 (713)
.+...+++...... +|.+.++ |+. +.|++++++-.-..+-+ -|.+.+.. ...|.-|+.+++..|
T Consensus 266 s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCC
Confidence 33444555554443 4555544 454 35777776543332111 12222222 456888888888888
Q ss_pred CHHHHH
Q 005130 354 NWQKAL 359 (713)
Q Consensus 354 ~~~~A~ 359 (713)
+.+...
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 876543
No 342
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.89 E-value=1.2e+02 Score=30.01 Aligned_cols=87 Identities=6% Similarity=-0.058 Sum_probs=42.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 005130 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---- 386 (713)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~---- 386 (713)
|.+++..+++.+++...-+--+..-+....+...-|-.|.|.|....+.++-..-.+..-+.+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4556666666555543322222211222333444444566666666666665555443223334445555555443
Q ss_pred -CCChhHHHHHH
Q 005130 387 -GDQLPKTMEVL 397 (713)
Q Consensus 387 -~g~~~~A~~l~ 397 (713)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666654
No 343
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=54.56 E-value=1.7e+02 Score=27.04 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005130 392 KTMEVLSDMKSLGLCPNT-ITYSILLVACERKD----D-------VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g----~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
+|+.-|++.+. +.|+. .++..+-.++...+ + +++|...|++... .+|+..+|+--+.++.
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 34444444444 56754 55555655554432 2 3444455554444 6799999888887753
No 344
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.42 E-value=1.3e+02 Score=24.99 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=46.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 005130 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 116 (713)
.....+||-.+.+.+...+. ....+....+....+.|++++|+.+=...+.||...|-+|-. .+.|-.+++...+.
T Consensus 18 G~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 35577888888888888763 233333333444566778888854444555677777766533 35566666666666
Q ss_pred HHHHcC
Q 005130 117 LVQEAG 122 (713)
Q Consensus 117 ~m~~~g 122 (713)
++-..|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665544
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=52.34 E-value=20 Score=20.85 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=7.7
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 005130 345 LMGACSNAKNWQKALELY 362 (713)
Q Consensus 345 li~~~~~~g~~~~A~~l~ 362 (713)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 333444444444444443
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=51.99 E-value=38 Score=20.76 Aligned_cols=27 Identities=7% Similarity=-0.013 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 376 TMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555666666555555443
No 347
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.76 E-value=1.2e+02 Score=26.01 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005130 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (713)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (713)
|..+-++.+...++.|++......|.||-+.+++..|.++|+-++.. +.+....|..+++-+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Confidence 44555666677789999999999999999999999999999887754 334445788777643
No 348
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=51.45 E-value=1.3e+02 Score=32.13 Aligned_cols=147 Identities=14% Similarity=0.024 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 005130 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (713)
Q Consensus 194 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 273 (713)
.|...--..-|.--...|++-.|-+-+..... ..+.+..........+...|+++.+...+......- .....+..
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr---~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~ 361 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALR---NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII-GTTDSTLR 361 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHH---hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh-cCCchHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005130 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 345 (713)
.++....+.|++++|..+-.-|....+. +...........-..|-++++...++++...+.+.+....|.|
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
No 349
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.29 E-value=3.3e+02 Score=28.97 Aligned_cols=53 Identities=8% Similarity=0.059 Sum_probs=26.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005130 314 AGHAGKVEAAFEILQEAKNQGISVGIIS---YSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 374 (713)
.+..|..+ +.+.+.+.|..++... ..+++...+..|+.+-+ +.+.+.|..++.
T Consensus 175 A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv----~~Ll~~gad~n~ 230 (413)
T PHA02875 175 AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV----RLFIKRGADCNI 230 (413)
T ss_pred HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH----HHHHHCCcCcch
Confidence 34456644 4445556666555332 12445444556665433 334455655554
No 350
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=50.84 E-value=27 Score=21.09 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=8.3
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 005130 136 TCAKSGKVDAMFEVFHEMV 154 (713)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~ 154 (713)
++.+.|++++|.+.|+++.
T Consensus 9 ~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 3334444444444444443
No 351
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.58 E-value=96 Score=24.68 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005130 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (713)
Q Consensus 289 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 358 (713)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|..+++++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3445555555543 22222222222223455555555555555 43 23455555555555544333
No 352
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=50.54 E-value=44 Score=20.44 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 271 VYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
+|..+...|.+.|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555544
No 353
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=49.13 E-value=3e+02 Score=27.92 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhH
Q 005130 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75 (713)
Q Consensus 27 ~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~ 75 (713)
..+..|..+..+++..+.++-+++....+ |.-...|.+..+.+.+.|
T Consensus 101 d~~~~~~~~~~~~~~~~Ll~~~E~sl~~~--pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 101 DRVADYQELLAQADWAALLQRVEQSLSLA--PFWLDGQRLSAQALERLG 147 (301)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHCC
Confidence 45566778888888888999998888775 555666777777777765
No 354
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=47.46 E-value=4.3e+02 Score=29.24 Aligned_cols=369 Identities=10% Similarity=0.040 Sum_probs=192.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-HHhhHHHHHHHHHhhhCC------CCCHHHHHHHHHHHHhCCChH
Q 005130 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CKSQKAIKEAFRFFKLVP------NPTLSTFNMLMSVCASSKDSE 109 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~ 109 (713)
+-|..+.+..+|++-... +|....+....... +...++.+.-.+.|+... --....|-..|..-...+++.
T Consensus 91 klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 688999999999998763 35444433333333 334566666677776542 134557888888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---c------CChhHHHHHHHHHHHC---C-CCCCHHHHHHHHHHHHH-c
Q 005130 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAK---S------GKVDAMFEVFHEMVNA---G-IEPNVHTYGALIDGCAK-A 175 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~---~------g~~~~A~~~~~~m~~~---g-~~~~~~~~~~li~~~~~-~ 175 (713)
....++++.++.- ..-|+....-|.+ . ...+++.++-...... + ..+....+..-++--.. .
T Consensus 169 ~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 9999999988631 1222222222221 1 2223333322222210 0 00112222222221111 1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005130 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (713)
Q Consensus 176 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~ 255 (713)
+..+++.....+.... -..+|+.-.....+.--+++...---.+.. .-..++..+|..-++--.+.|+.+.+.-
T Consensus 245 ~~l~~~~~~l~~~~~~----~~~~~~~s~~~~~kr~~fE~~IkrpYfhvk--pl~~aql~nw~~yLdf~i~~g~~~~~~~ 318 (577)
T KOG1258|consen 245 KSLTEEKTILKRIVSI----HEKVYQKSEEEEEKRWGFEEGIKRPYFHVK--PLDQAQLKNWRYYLDFEITLGDFSRVFI 318 (577)
T ss_pred chhhHHHHHHHHHHHH----HHHHHHhhHhHHHHHHhhhhhccccccccC--cccHHHHHHHHHHhhhhhhcccHHHHHH
Confidence 2233333333322211 122333222223322223333322222211 0123445667777777777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 256 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
+|+...-.- ..-...|--.+.-....|+.+-|..++..-.+--++ |....+.+.+ +-..|+.+.|..+++.+...
T Consensus 319 l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 319 LFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh
Confidence 776554321 112244555555555557777777777665554333 2222333322 44567888888888887766
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----HHhCCChhHHHHHHHHHHHCC
Q 005130 334 GISVG-IISYSSLMGACSNAKNWQKAL---ELYEHMKSIKLKPTVSTMNALITA-----LCDGDQLPKTMEVLSDMKSLG 404 (713)
Q Consensus 334 g~~~~-~~~~~~li~~~~~~g~~~~A~---~l~~~m~~~~~~p~~~~~~~li~~-----~~~~g~~~~A~~l~~~m~~~g 404 (713)
- |+ +.+-..-+.+..+.|+.+.+. .++....... -+....+.+.-- +.-.++.+.|..++.+|.+.
T Consensus 396 ~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~- 470 (577)
T KOG1258|consen 396 Y--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI- 470 (577)
T ss_pred C--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-
Confidence 3 33 233334455666777777777 4444443322 222222333222 33467888999999998875
Q ss_pred CCCCHHHHHHHHHHHHhcCCH
Q 005130 405 LCPNTITYSILLVACERKDDV 425 (713)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~ 425 (713)
++++...|..++.-+...+..
T Consensus 471 ~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 471 LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred CCccHHHHHHHHHHHHhCCcc
Confidence 566778888888877766643
No 355
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=47.13 E-value=3.6e+02 Score=28.23 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=36.8
Q ss_pred CHHHHHHH---HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHH
Q 005130 91 TLSTFNML---MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA-KSGKVDAMFEVFHEMV 154 (713)
Q Consensus 91 ~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 154 (713)
|...|-++ |..+.+.|.+..|+++.+.+......-|+.....+|+.|+ +.++++--+++.+...
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 44444443 3456666777777777777766654445655555666554 3455555555555543
No 356
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=46.77 E-value=3.4e+02 Score=27.86 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 270 EVYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
.+|..++..+.+.|+++.|...+..+..
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 3444555555555555555555555444
No 357
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=46.61 E-value=2.7e+02 Score=26.61 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHH
Q 005130 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLM 346 (713)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li 346 (713)
-+.+||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++..|.+-+...-+... .|-...|--++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 356777777777788888888888888777655433333333332 2235777777766655554431 12112222222
Q ss_pred HHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHH
Q 005130 347 GACSNAKNWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-------TITYSILLVA 418 (713)
Q Consensus 347 ~~~~~~g~~~~A~~l~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~t~~~ll~a 418 (713)
-..-++.+|..-+ ++.. ..|..-|...|-.|.-..-.++ .+|++++. +-.-+ ..||--+..-
T Consensus 177 ---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a-~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE--TLMERLKA-DATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH--HHHHHHHh-hccchHHHHHHHHHHHHHHHHH
Confidence 1223445554433 3333 3454555555544433222222 23333332 11211 2355556677
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 005130 419 CERKDDVEVGLMLLSQAKEDG 439 (713)
Q Consensus 419 ~~~~g~~~~a~~~~~~m~~~g 439 (713)
+...|++++|..+|+-.+...
T Consensus 247 ~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HhccccHHHHHHHHHHHHHHh
Confidence 778899999999998777543
No 358
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=45.94 E-value=2.3e+02 Score=28.14 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=46.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 005130 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK---- 174 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---- 174 (713)
|.+++..+++.+++...-+-.+.--+....+...-|-.|.+.+.+..+.++-..-.+..-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5667777777766654433332211122334444455566777776666666655544222333446665555544
Q ss_pred -cCCHHHHHHHH
Q 005130 175 -AGQVAKAFGAY 185 (713)
Q Consensus 175 -~g~~~~A~~l~ 185 (713)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666665554
No 359
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.88 E-value=3.1e+02 Score=27.04 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005130 238 GALMKACANAGQVDRAREVYKMIHKYNIK-----------GTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
.-|...|...+.+....++++++....-. .-..+|..=|..|....+-.....+|++..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 34556666667777777777666542110 012445555666666655555555665543
No 360
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=45.85 E-value=1.2e+02 Score=30.77 Aligned_cols=50 Identities=16% Similarity=0.071 Sum_probs=30.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005130 278 CCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQE 329 (713)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~ 329 (713)
-|.+.|.+++|+..|..-... .| |.+++..-..+|.+...+..|..--..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 466677777777777654443 33 566666666667666666655544333
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=45.58 E-value=49 Score=22.43 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=10.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005130 416 LVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~m~~ 437 (713)
..+|...|+.+.|+.++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444555555555555554443
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=44.73 E-value=45 Score=22.63 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=12.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 005130 345 LMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 345 li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
|..+|...|+.+.|+++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 363
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.67 E-value=22 Score=30.68 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=22.2
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005130 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (713)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (713)
+.|.-.+|..+|..|.+.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345567788888888888877775 6776654
No 364
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.55 E-value=1.8e+02 Score=24.18 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005130 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (713)
Q Consensus 319 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (713)
..++|..|.+.+...+. ....+--.-+..+.+.|++++|... ......||...|-+|- -.+.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~----~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL----PQCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH----HTTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh----cccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 35566666666665542 2222333334455666666666211 1122256666665443 235666666666666
Q ss_pred HHHHCCCCCCHHHH
Q 005130 399 DMKSLGLCPNTITY 412 (713)
Q Consensus 399 ~m~~~g~~p~~~t~ 412 (713)
++..+| .|....|
T Consensus 94 rla~~g-~~~~q~F 106 (116)
T PF09477_consen 94 RLASSG-SPELQAF 106 (116)
T ss_dssp HHCT-S-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 555443 3333333
No 365
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.24 E-value=97 Score=25.87 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 376 TMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
-|..|+.-|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 388899999999999999999988876
No 366
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.01 E-value=1.8e+02 Score=32.43 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 005130 309 ALIDFAGHAGKVEAAFEILQEAKNQ--GISVGIISYSSLMGACSNAKNWQ------KALELYEHMKSIKLKPTVSTMNAL 380 (713)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~------~A~~l~~~m~~~~~~p~~~~~~~l 380 (713)
+|+.+|...|++..+.++++..... |-+.-...||..|.-..+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888888888888888888887665 33334566777788888888753 3444444333 45677777776
Q ss_pred HHHHHh
Q 005130 381 ITALCD 386 (713)
Q Consensus 381 i~~~~~ 386 (713)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665433
No 367
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.64 E-value=3.6e+02 Score=26.90 Aligned_cols=219 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHHHhhh--CCCCCCCCHHHHH
Q 005130 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-------ALITACGQSGAVDRAFDVLAEMNA--EVHPVDPDHITIG 238 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~-------~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~pd~~~~~ 238 (713)
+.+-..+.+++++|+..|.++..+|+..|..+.| .+...|...|+...--++...... ....-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHH
Q 005130 239 ALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEVY-----TIAINCCSQTGDWEFACSVY----DDMTKKGVIPDEVFLS 308 (713)
Q Consensus 239 ~ll~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~ 308 (713)
+|+..+....+ ++.-..+.....+...+-..... .-+|..+.+.|.+.+|+.+. .++.+.+-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005130 309 ALID-FAGHAGKVEAAFEILQEAKNQ----GISVGIISYSSLMGACSNAKN--WQKALELYEHMKSIKLKPTVSTMNALI 381 (713)
Q Consensus 309 ~li~-~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~~~p~~~~~~~li 381 (713)
.+=+ +|-...++.++..-+...+.. -++|-...---|+++-..|.+ +.-|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E-------------- 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE-------------- 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh--------------
Q ss_pred HHHHhCCChhHHHHHHHHHH
Q 005130 382 TALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~ 401 (713)
+|.....-.+|...++-|.
T Consensus 235 -gft~l~~d~kAc~sLkYml 253 (421)
T COG5159 235 -GFTLLKMDVKACVSLKYML 253 (421)
T ss_pred -ccccccchHHHHHHHHHHH
No 368
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=42.36 E-value=3.1e+02 Score=26.18 Aligned_cols=182 Identities=14% Similarity=0.083 Sum_probs=98.8
Q ss_pred HHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 005130 70 VCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (713)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 146 (713)
.+.+.|-...|.--|.+. .+.-+..||.+.--+...|+++.|.+.|+...+....-+-...|.-|..| -.|++..|
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LA 152 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLA 152 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhh
Confidence 344455555555555542 23446788888888899999999999999988765333333334333333 45888888
Q ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005130 147 FEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 147 ~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~l~-~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (713)
.+-|...-+... .|-...|--++. +.-++.+|..-+ ++... .|..-|...|-.|.- |.+. ...++++..
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~ 223 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLK 223 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHH
Confidence 887777666531 232333433332 334566665443 33332 244555544433321 1111 122333333
Q ss_pred hCCCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005130 225 AEVHPVDPD-------HITIGALMKACANAGQVDRAREVYKMIHKYN 264 (713)
Q Consensus 225 ~~~~~~~pd-------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 264 (713)
.. ...+ ..||--|.+-|...|+.++|..+|+.....+
T Consensus 224 a~---a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 224 AD---ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hh---ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 21 1111 2345556666677777777777777665543
No 369
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=41.94 E-value=1.2e+02 Score=21.49 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=20.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005130 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (713)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 453 (713)
.-++.+.|++++|++..+.+.+ ++|+..-...|-.+
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 3456667777777777766666 45665555544433
No 370
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.11 E-value=3.1e+02 Score=25.82 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=7.4
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 005130 349 CSNAKNWQKALELYEHMK 366 (713)
Q Consensus 349 ~~~~g~~~~A~~l~~~m~ 366 (713)
|.+...+++|+.-|..+.
T Consensus 178 yek~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKIL 195 (271)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 333344444444444443
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.41 E-value=1.2e+02 Score=24.05 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCC
Q 005130 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (713)
.|+.+.|.+++..++ ...-.|..++.++...|.
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 344445555555444 444444444444444443
No 372
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.40 E-value=85 Score=27.03 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHh
Q 005130 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84 (713)
Q Consensus 43 ~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 84 (713)
++.++|..|.++++-...+.++......+...|++.+|.++|
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344455555554443333333333334444444444444444
No 373
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.34 E-value=30 Score=29.89 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=18.3
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005130 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 419 (713)
.|.-.+|..+|++|++.|-+||. |+.|+.++
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34555666677777777766653 45555443
No 374
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.14 E-value=91 Score=21.52 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=16.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005130 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (713)
Q Consensus 420 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 451 (713)
.+.|.+.++..++++|.+.|+.-+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 44455555555555555555555555544443
No 375
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.49 E-value=2.1e+02 Score=24.60 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005130 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 287 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
+..+-+..+..-++.|+.......+.+|.+.+++..|..+|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555566666677777777777777777777777777777766554
No 376
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.12 E-value=1.1e+02 Score=21.05 Aligned_cols=31 Identities=10% Similarity=0.243 Sum_probs=16.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005130 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 346 (713)
+.|-.+++..+++.|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555555444
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=38.87 E-value=95 Score=24.17 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=24.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 005130 174 KAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDV 219 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~ 219 (713)
..++.++|+..|....+.-..|. -.++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666555422221 12344556666666666655544
No 378
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=38.82 E-value=6.4e+02 Score=28.71 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=41.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---
Q 005130 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSN--- 351 (713)
Q Consensus 276 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~--- 351 (713)
...+.-.|+++.|++.+-+ ..+...|.+.+...+..|.- +......-..+.... -.|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gL---L~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGL---LRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCC---CCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455668999999998877 22333456666555554432 222222112222221 11222567888888876
Q ss_pred cCCHHHHHHHHHHHHhC
Q 005130 352 AKNWQKALELYEHMKSI 368 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~ 368 (713)
..+..+|.+.|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 45788888888777653
No 379
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=38.74 E-value=3.2e+02 Score=25.26 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005130 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (713)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 443 (713)
+++|.+.|++..+ ..|+..+|..-|..+. .|-+++.++.+.+..+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHhhhh
Confidence 5566666666665 4899999998887764 36677877777765433
No 380
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=38.40 E-value=1.7e+02 Score=31.24 Aligned_cols=144 Identities=16% Similarity=0.156 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CC----CHHHHHHHHHHH----
Q 005130 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-----KP----TVSTMNALITAL---- 384 (713)
Q Consensus 318 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-----~p----~~~~~~~li~~~---- 384 (713)
+.+++-.++++.+.+.| .+| ....-|+.|.+.+++++|...+++-.+.|. -| .+.+...++...
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 34667777777777765 222 445557778888888888877776554210 11 122233333332
Q ss_pred -HhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHCCCCCCHHHHHHHHHH
Q 005130 385 -CDGDQLPKTMEVLSDMKSLGLCPN---TITYSILLVACERKDDVEVGLMLLSQA-------KEDGVIPNLVMFKCIIGM 453 (713)
Q Consensus 385 -~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m-------~~~g~~p~~~~~~~li~~ 453 (713)
.++|.+ .|..+++-+...|+.-. .++|+. -|++.=-+++++..++.+ .+.|+..+.+.+.+|...
T Consensus 145 QvRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgt 220 (480)
T TIGR01503 145 QIRHGTP-DARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGT 220 (480)
T ss_pred eccCCCC-cHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCC
Confidence 234433 45666666666665432 344432 334444455554444322 345777777777766543
Q ss_pred HHh-hHHHHHHHHHHh
Q 005130 454 CSR-RYEKARTLNEHV 468 (713)
Q Consensus 454 ~~r-~~~~a~~l~~a~ 468 (713)
+.- .+.-|..+.|++
T Consensus 221 LvPPsisiav~ilE~L 236 (480)
T TIGR01503 221 LVPPSISNAIGIIEGL 236 (480)
T ss_pred ccChHHHHHHHHHHHH
Confidence 322 333344444443
No 381
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.07 E-value=4.1e+02 Score=26.28 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Q 005130 126 DCKLYTTLITTCAKSGKVDAMFEVF 150 (713)
Q Consensus 126 d~~~~~~li~~~~~~g~~~~A~~~~ 150 (713)
|+.....+...|.+.+++.+|..-|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 6677778888888888888887655
No 382
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.41 E-value=1.2e+02 Score=24.33 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005130 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (713)
Q Consensus 21 ~~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~ 55 (713)
.|.|.......-..++..|++++|++.+-++.+.+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45555566666666777888888888887777665
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=37.08 E-value=1e+02 Score=23.97 Aligned_cols=46 Identities=7% Similarity=-0.054 Sum_probs=26.8
Q ss_pred hCCChhHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCCHHHHHHH
Q 005130 386 DGDQLPKTMEVLSDMKSLGLCP-NT-ITYSILLVACERKDDVEVGLML 431 (713)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~ 431 (713)
...+.++|+..|....+.-..| +. .++..++.|++..|++.+.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777776665543222 21 3455666777777777666554
No 384
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.15 E-value=5.9e+02 Score=27.58 Aligned_cols=105 Identities=14% Similarity=0.019 Sum_probs=60.4
Q ss_pred HHhcCCHHHHHHHHHHHH---hCCCCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHH-------HCCCCCC-----
Q 005130 349 CSNAKNWQKALELYEHMK---SIKLKPT-----VSTMNALITALCDGDQLPKTMEVLSDMK-------SLGLCPN----- 408 (713)
Q Consensus 349 ~~~~g~~~~A~~l~~~m~---~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~-------~~g~~p~----- 408 (713)
+.-.|++.+|.+++...- +.|...+ -..||.|-..+.+.|.+.-+..+|.+.. ..|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445677777777765432 1121111 1235666666666666666666665554 3465553
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005130 409 ------TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 409 ------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
..+|+.= -.+.+.|+.-.|.+.|....+. +..++..|--|..+|.
T Consensus 330 s~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 2234432 3567888888888888776653 3455566666666554
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.75 E-value=1.5e+02 Score=27.64 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005130 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 371 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.|+...|..++..+...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 386
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=35.35 E-value=69 Score=18.15 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=9.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q 005130 379 ALITALCDGDQLPKTMEVLSDM 400 (713)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m 400 (713)
.+...|...|++++|...|.+.
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3333444444444444444433
No 387
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.84 E-value=79 Score=23.26 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=11.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q 005130 379 ALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
.+|.+|.+.|++++|.+..+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555543
No 388
>PRK14700 recombination factor protein RarA; Provisional
Probab=34.46 E-value=3.9e+02 Score=27.02 Aligned_cols=46 Identities=17% Similarity=0.055 Sum_probs=30.6
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005130 274 IAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (713)
Q Consensus 274 ~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 319 (713)
-+|+++.| ..+++.|+-.+.+|.+.|..|....=..++-++...|.
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 34555544 35677788888888888877766666666666665553
No 389
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.23 E-value=4.1e+02 Score=25.11 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=56.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCC
Q 005130 315 GHAGKVEAAFEILQEAKNQGISV----GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQ 389 (713)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 389 (713)
.+.|++++|..-|...+..-... ..+.|..-..++.+.+.++.|+.-.....+.+ |+ ....---..+|.+..+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhh
Confidence 34566666666666555542111 12345555566777788888777776666543 32 1222223457888889
Q ss_pred hhHHHHHHHHHHHCCCCCCHH
Q 005130 390 LPKTMEVLSDMKSLGLCPNTI 410 (713)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~ 410 (713)
+++|++-|+.+.+. .|...
T Consensus 184 ~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 184 YEEALEDYKKILES--DPSRR 202 (271)
T ss_pred HHHHHHHHHHHHHh--CcchH
Confidence 99999999999884 56554
No 390
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.76 E-value=3e+02 Score=30.81 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHhhhCCCCCCCCHHHHH
Q 005130 167 ALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRVVFNALITACGQSGAVD------RAFDVLAEMNAEVHPVDPDHITIG 238 (713)
Q Consensus 167 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~~pd~~~~~ 238 (713)
+|+.+|..+|++-.+.++++..... |-+.=...||.-|+...+.|.++ .|.+++++. .+.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a-----~ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA-----RLNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh-----hcCCcchHHH
Confidence 7899999999999999999988754 33333567888888888888754 344444443 3566778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 005130 239 ALMKACANAGQVDRAREVYKMIHK 262 (713)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~m~~ 262 (713)
.|+.+-..--+-....-++.+...
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHHH
Confidence 777655443333333334444433
No 391
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.50 E-value=79 Score=31.69 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005130 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 413 (713)
||..|..-.+.|++++|+++++|..+.|+.--..||.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4566666666777777777777766666554444443
No 392
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=32.40 E-value=8.8e+02 Score=28.46 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 005130 344 SLMGACSNAKNWQKALELYEHMKSI 368 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~~~m~~~ 368 (713)
.|+..+...|++++|....+++...
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5566666777777777777776643
No 393
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.77 E-value=86 Score=31.43 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 005130 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 194 (713)
|+..|....+.|++++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555566666666666665555543
No 394
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.10 E-value=4.4e+02 Score=24.51 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=15.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 005130 99 MSVCASSKDSEGAFQVLRLVQE 120 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~ 120 (713)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 4457777777777777777665
No 395
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=30.80 E-value=1.6e+02 Score=20.85 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=18.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005130 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (713)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (713)
+.-++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 34456666666666666666665 35655444443
No 396
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.67 E-value=5.6e+02 Score=25.65 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHH----HCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHH
Q 005130 376 TMNALITALCDGDQLPKTMEVLSDMK----SLGLCPNTITYS-ILLVACERKDDVEVGLMLLSQAKEDGVIP----NLVM 446 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~g~~p----~~~~ 446 (713)
.|-.+..-|++-++.+.+.+...+.. ..|.+.|...-. .+.-.|....-+++-++..+.|.+.|..= ...+
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~ 196 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKV 196 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHH
Confidence 34444455555555555555443322 234444432211 11122223333445555555555554321 1234
Q ss_pred HHHHHHHHHhhHHHHHHH-HHHhhhccC
Q 005130 447 FKCIIGMCSRRYEKARTL-NEHVLSFNS 473 (713)
Q Consensus 447 ~~~li~~~~r~~~~a~~l-~~a~~~~~~ 473 (713)
|..+..+..|++.+|..+ .+.+..|.+
T Consensus 197 Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 197 YKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 444444445556665554 334444443
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=29.84 E-value=2.2e+02 Score=26.53 Aligned_cols=34 Identities=9% Similarity=-0.044 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005130 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (713)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 368 (713)
..|++.+|..++..+...|+.++|.++.+++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777777777777777777776643
No 398
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=29.26 E-value=1.1e+03 Score=28.50 Aligned_cols=198 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHH-
Q 005130 167 ALIDGCAKAGQVAKAFGAYGIMR---SKNVKPDRVVFNALITACGQS-GAVDRAFDVLAEMNAEVHPVDPDHITIGALM- 241 (713)
Q Consensus 167 ~li~~~~~~g~~~~A~~l~~~m~---~~g~~pd~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll- 241 (713)
..|+-+...+++.+|+.+.++=+ .-=+.-|...|-.=+..+.+. ++.+---.++..+..+ .-....|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E----Dvt~tmY~~~~~ 774 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE----DVTKTMYKDTYP 774 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc----cccccccccccc
Q ss_pred -----------HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH
Q 005130 242 -----------KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLS 308 (713)
Q Consensus 242 -----------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~ 308 (713)
......+++...-+.+....+. ......-...++.+|++.+ ++++|+.+..++.+.
T Consensus 775 ~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~---------- 843 (928)
T PF04762_consen 775 PSSEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE---------- 843 (928)
T ss_pred cccccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----------
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 005130 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD-- 386 (713)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-- 386 (713)
.....++|++.+..+...+ ..|+.-+.+| +++-|.-+-++-. .|+.-|--.+.-+-+
T Consensus 844 -------~~~~ae~alkyl~fLvDvn-----~Ly~~ALG~Y----Dl~Lal~VAq~SQ-----kDPKEYLPfL~~L~~l~ 902 (928)
T PF04762_consen 844 -------DPESAEEALKYLCFLVDVN-----KLYDVALGTY----DLELALMVAQQSQ-----KDPKEYLPFLQELQKLP 902 (928)
T ss_pred -------ChHHHHHHHhHheeeccHH-----HHHHHHhhhc----CHHHHHHHHHHhc-----cChHHHHHHHHHHHhCC
Q ss_pred -----------CCChhHHHHHHHHH
Q 005130 387 -----------GDQLPKTMEVLSDM 400 (713)
Q Consensus 387 -----------~g~~~~A~~l~~~m 400 (713)
.+++++|++-+.++
T Consensus 903 ~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 903 PLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred hhheeeeHhhhhCCHHHHHHHHHhh
No 399
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.93 E-value=2.7e+02 Score=23.18 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 005130 130 YTTLITTCAKSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (713)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555555555555555555555443
No 400
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.63 E-value=3.7e+02 Score=24.95 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=12.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 005130 346 MGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 346 i~~~~~~g~~~~A~~l~~~m~~ 367 (713)
+-.|.+.|.+++|.+++++..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445566666666666665554
No 401
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.50 E-value=3.4e+02 Score=24.07 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=20.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005130 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (713)
Q Consensus 116 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (713)
..+.+.|++++.. -..++..+...++.-.|.++|+++.+.+...+
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 3444445444332 22344444444444555555555555544433
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.34 E-value=1.1e+03 Score=28.12 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=13.9
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005130 35 LIRQGRISECIDLLEDMER 53 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~~ 53 (713)
+..+|++++|.++|+++..
T Consensus 356 lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 356 LFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred HHHhhhHHHHHHHHHhhcc
Confidence 3367888888888887654
No 403
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=27.83 E-value=4.6e+02 Score=26.72 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=20.3
Q ss_pred HHHHHHHHHHH----cCCCccHHHHHHHHhhcCCC
Q 005130 485 LALMVYREAIV----AGTIPTVEVVSKVLGCLQLP 515 (713)
Q Consensus 485 ~A~~~~~~m~~----~g~~P~~~~~~~~l~~~~~~ 515 (713)
.|..+++.+.+ .|-.|.....++++-+|+.+
T Consensus 239 ~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~~~~ 273 (310)
T PRK00423 239 KAIEILQKAKEKGLTSGKGPTGLAAAAIYIASLLL 273 (310)
T ss_pred HHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHh
Confidence 46667766655 46788888777776555443
No 404
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.72 E-value=28 Score=35.27 Aligned_cols=86 Identities=14% Similarity=0.061 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHH
Q 005130 75 KAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFEVF 150 (713)
Q Consensus 75 ~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~~~ 150 (713)
|.++.|+..|... .++....|.---+++.+.+....|++=+....+. .||. .-|-.--.+....|++++|...|
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHHHH
Confidence 4455555555432 1233333444444455555555555444444432 2222 11222222223345566666666
Q ss_pred HHHHHCCCCCCH
Q 005130 151 HEMVNAGIEPNV 162 (713)
Q Consensus 151 ~~m~~~g~~~~~ 162 (713)
....+.++.+..
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 665555544433
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=27.00 E-value=4.4e+02 Score=29.17 Aligned_cols=132 Identities=20% Similarity=0.160 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005130 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 251 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 330 (713)
+-|-.+|..|.... .|--.+.|...-.+.-.|+...|.+.+.........-..+....|.....+.|..-+|-.++.+.
T Consensus 590 e~~~~~~~~~~~~~-~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINKPN-APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcCCC-CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 44555555554432 22212222222223345677777766665543322222334445555556666666777777666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005130 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (713)
Q Consensus 331 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 385 (713)
.... ...+.++-.+..+|.-..+++.|++.|++..+.. ..+.+.-+.|...-|
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 5554 3445667777888888888888888888776553 344556666655444
No 406
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.90 E-value=6e+02 Score=24.74 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=46.2
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHH---HH-HHHHhc--CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh-
Q 005130 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSI---LL-VACERK--DDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR- 456 (713)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---ll-~a~~~~--g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~r- 456 (713)
+..+++.+|+++|++.....+.-+..-|+. ++ .++|+. .+.-.+...++...+. .--.|.+-+.-|-+++.-
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ai 244 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAI 244 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 456889999999999876544433333332 11 223332 4444455555555542 222344555555554332
Q ss_pred hHHHHHHHHHHhhhccCCC
Q 005130 457 RYEKARTLNEHVLSFNSGR 475 (713)
Q Consensus 457 ~~~~a~~l~~a~~~~~~~~ 475 (713)
.-.....+.+.+..|++..
T Consensus 245 eE~d~e~fte~vkefDsis 263 (288)
T KOG1586|consen 245 EEQDIEKFTEVVKEFDSIS 263 (288)
T ss_pred hhhhHHHHHHHHHhhhccc
Confidence 1122344555555565543
No 407
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.88 E-value=8e+02 Score=26.19 Aligned_cols=46 Identities=15% Similarity=-0.041 Sum_probs=28.6
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005130 272 YTIAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (713)
Q Consensus 272 ~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 317 (713)
+..+++++.+ .++++.|+..+..|.+.|..|....-..++.++...
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 4444555554 467888888888888888776655444444444333
No 408
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=26.87 E-value=4.1e+02 Score=29.39 Aligned_cols=57 Identities=14% Similarity=0.018 Sum_probs=27.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 005130 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (713)
|.....+.|....|-.++.+..... ...+.++-.+-++|.-..+++.|++.|.+...
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 3334444444455555554444332 22334444555555555555666555555443
No 409
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.57 E-value=3e+02 Score=21.79 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHH
Q 005130 45 IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 45 ~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 111 (713)
-.++..+...|++.... .-.+-......+.|.++++.++.....+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~~~-----~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTPDM-----IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCHHH-----HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34777777777654331 112223344567788888888888888888888877776654433
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.45 E-value=7.9e+02 Score=26.00 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHH
Q 005130 374 VSTMNALITALCDGDQLPKTMEVLSDMKSL------GLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVM 446 (713)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~ 446 (713)
...+..|..... +++..|.+.|-..... =+.|..++....+.|.+-.++-+--+.+..... +.=.+..+..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 344444443333 3566666555433211 145655555566666665555443333332111 1112334455
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 005130 447 FKCIIGMCSRRYEKARTLNEH 467 (713)
Q Consensus 447 ~~~li~~~~r~~~~a~~l~~a 467 (713)
..++-+-|.++|..|.++.+.
T Consensus 309 r~il~~fy~sky~~cl~~L~~ 329 (466)
T KOG0686|consen 309 REILFKFYSSKYASCLELLRE 329 (466)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 667777788788888776654
No 411
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=26.11 E-value=8.3e+02 Score=26.16 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005130 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (713)
Q Consensus 343 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (713)
..|+.-|.-.|++.+|.+..+++.- .+-.....+-+++.+.-+.|+-...+.++++.-..|+ +|-+.+-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 3455566666777776666555431 0111244566666666666666666666666555443 333444444444
No 412
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.86 E-value=2.5e+02 Score=23.58 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=15.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCC
Q 005130 133 LITTCAKSGKVDAMFEVFHEMVNAG 157 (713)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g 157 (713)
+|+.+.+|...++|+++.+.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444556666666666666666665
No 413
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=25.31 E-value=2.8e+02 Score=22.20 Aligned_cols=57 Identities=12% Similarity=0.250 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCC
Q 005130 46 DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (713)
Q Consensus 46 ~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (713)
.++..+...|++..... -.+-......+.+.++++.++.....+|..+..++-..+.
T Consensus 24 ~v~~~L~~~gvlt~~~~-----~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 24 ELLIHLLQKDILTDSMA-----ESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHcCCCCHHHH-----HHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 46777777787644321 1122233455777788888877777788888777765443
No 414
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.17 E-value=3.9e+02 Score=22.04 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005130 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD--DVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (713)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li 451 (713)
..++..|...|+.++|...+.++.... -.......++..+...+ .-+....++..+.+.+..+......++-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~ 79 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFE 79 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 345666777778888877777653211 11122223333333332 2233455666666666554444433333
No 415
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=25.05 E-value=69 Score=25.68 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=16.6
Q ss_pred chHhHHhhhcCcCCCCCCCCC
Q 005130 666 NGLALKRWFQPKLASPFSGKP 686 (713)
Q Consensus 666 ~~~~~~~wl~~~~~~~~~~~~ 686 (713)
+...|+.||++..+.+.+.+.
T Consensus 9 t~~EL~~WL~t~~S~~~g~~~ 29 (92)
T PF11338_consen 9 TPAELEDWLRTDESKSVGEKK 29 (92)
T ss_pred CHHHHHHHHcCccccccccCC
Confidence 788999999999887754444
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=24.94 E-value=2.7e+02 Score=22.31 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=13.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 005130 133 LITTCAKSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~ 155 (713)
+.......|++++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444555666666666666543
No 417
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=24.82 E-value=7.4e+02 Score=25.10 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhCCChh
Q 005130 376 TMNALITALCDGDQLP 391 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~ 391 (713)
+|.-|+.++|..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 3444555555555444
No 418
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=24.66 E-value=4.5e+02 Score=22.56 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHH
Q 005130 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHE 152 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~ 152 (713)
.+.++|..|...|+... ...|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55666666666554433 33455555555566666666666543
No 419
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=24.42 E-value=1.3e+02 Score=32.17 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=29.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHH
Q 005130 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 82 (713)
.|..++.+.++.|+.++.++++.. |+.+.+...-.....+.+++..|+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~ 59 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALH 59 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHH
Confidence 455677888888888888888876 5555554433333333333333333
No 420
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.36 E-value=1.1e+03 Score=27.15 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=58.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005130 99 MSVCASSKDSEGAFQVLRLVQEAGLKA---DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (713)
|+-+.+.+.+++|+.+-+.... ..| -.......|..+...|++++|-.+.-.|.. -+..-|.--+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 3445666777777766654432 233 234566677777777788877777777763 3556666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005130 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (713)
Q Consensus 176 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 209 (713)
++...... -+.......+...|..++..+..
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 65543322 22222222345666666666655
No 421
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=23.74 E-value=7.9e+02 Score=25.08 Aligned_cols=130 Identities=18% Similarity=0.091 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005130 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 187 (713)
..+|..+|++..+.| =..|.+......--...+.+.+++...-++.-.-|.-+.-+.|+..+|.+.|++
T Consensus 232 i~~AE~l~k~ALka~-----------e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKAG-----------ETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCH
Q 005130 188 MRSKNVKPDRVVFN---ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (713)
Q Consensus 188 m~~~g~~pd~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~ 250 (713)
+.+. .|-...+| .||.++.....+.+...++.+......+-.....--.+|+++-+-..++
T Consensus 301 L~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kF 364 (556)
T KOG3807|consen 301 LMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKF 364 (556)
T ss_pred Hhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhc
No 422
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=23.74 E-value=90 Score=22.96 Aligned_cols=31 Identities=19% Similarity=0.479 Sum_probs=22.4
Q ss_pred CCcchhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMER 53 (713)
Q Consensus 23 ~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~ 53 (713)
||....+.+...|+..|++++|.+.++++..
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455566777788888888888888887764
No 423
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=23.41 E-value=93 Score=21.46 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhCCCCCCCCccceEEechHhH
Q 005130 639 TTQAIAALLRRLGLPYQGNGSYGKIRINGLAL 670 (713)
Q Consensus 639 ~~~~v~~~l~~~~~~~~~~~~~g~~~~~~~~~ 670 (713)
-+..-.+-|++.|+||.... .|+.++++..+
T Consensus 16 ~~~~Q~~~L~~~Gi~~~~~~-~G~p~V~r~~v 46 (47)
T PF13986_consen 16 RPSKQIRWLRRNGIPFVVRA-DGRPIVTRSHV 46 (47)
T ss_pred CHHHHHHHHHHCCCeeEECC-CCCEEeeHHHh
Confidence 46677899999999999764 48888877654
No 424
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.21 E-value=1e+03 Score=26.25 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=10.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 005130 168 LIDGCAKAGQVAKAFGAYGIM 188 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m 188 (713)
++.-|.+.+++++|..++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 444455555555555554444
No 425
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.11 E-value=3.7e+02 Score=21.51 Aligned_cols=18 Identities=6% Similarity=0.034 Sum_probs=9.3
Q ss_pred HHhCCChhHHHHHHHHHH
Q 005130 384 LCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~ 401 (713)
....|+.++|++.+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 344455555555555543
No 426
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.75 E-value=8.4e+02 Score=25.00 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhHHHHHHH-HHHhhhccC
Q 005130 445 VMFKCIIGMCSRRYEKARTL-NEHVLSFNS 473 (713)
Q Consensus 445 ~~~~~li~~~~r~~~~a~~l-~~a~~~~~~ 473 (713)
.+|..+-.+-.|.+.+|..+ .+++..|.+
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 35555555555666666655 344444443
No 427
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=22.56 E-value=1.3e+03 Score=27.17 Aligned_cols=252 Identities=12% Similarity=0.068 Sum_probs=126.2
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHH----HHHHhCCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHH-HHHcCC
Q 005130 75 KAIKEAFRFFKLVPNPTLSTFNMLM----SVCASSKDSEGAFQVLRLVQEAGLKADCK-------LYTTLITT-CAKSGK 142 (713)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------~~~~li~~-~~~~g~ 142 (713)
+++.--+...+.+|.+-...++.++ -......++.+|..+..++...-..|+.. .++.|-.. ....|+
T Consensus 394 ~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~ 473 (894)
T COG2909 394 SELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGD 473 (894)
T ss_pred cchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCC
Confidence 3444444444555533233332222 23445678999999888776543233221 23333222 234578
Q ss_pred hhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHH--HHHHhcCCH
Q 005130 143 VDAMFEVFHEMVNA----GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN---ALI--TACGQSGAV 213 (713)
Q Consensus 143 ~~~A~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~---~li--~~~~~~g~~ 213 (713)
++.|.++-+..... -..+....+..+..+..-.|++++|..+..+..+..-.-|...+. .+. ..+-..|..
T Consensus 474 ~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~ 553 (894)
T COG2909 474 PEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQV 553 (894)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHH
Confidence 88888877766543 234456677788888888999999998887765442222333332 222 224445632
Q ss_pred --HHHHHHHHHhhhCCCCC----CCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHhcCCCCCHHH--HHHHHHHHHh
Q 005130 214 --DRAFDVLAEMNAEVHPV----DPDHITIGALMKACANAGQVDRAREV----YKMIHKYNIKGTPEV--YTIAINCCSQ 281 (713)
Q Consensus 214 --~~A~~~~~~m~~~~~~~----~pd~~~~~~ll~~~~~~g~~~~A~~~----~~~m~~~~~~~~~~~--~~~li~~~~~ 281 (713)
.+....|.........- .+-..++..++.++.+ ++.+..- +..-......+-... +..|+..+..
T Consensus 554 ~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~ 630 (894)
T COG2909 554 ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL 630 (894)
T ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh
Confidence 23333333332210000 1223344455555555 3332222 222222211111122 2356777788
Q ss_pred cCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 005130 282 TGDWEFACSVYDDMTKKGV----IPDEVFLSALIDF--AGHAGKVEAAFEILQE 329 (713)
Q Consensus 282 ~g~~~~A~~l~~~m~~~g~----~p~~~t~~~li~~--~~~~g~~~~a~~~~~~ 329 (713)
.|+.++|...++++..... .++..+....+.. ....|+...+.....+
T Consensus 631 ~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 631 RGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 8999999988888765432 2233333333332 2345666665554443
No 428
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=22.31 E-value=9.3e+02 Score=25.38 Aligned_cols=52 Identities=13% Similarity=0.106 Sum_probs=26.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 005130 280 SQTGDWEFACSVYDDMTKKGVIPDEV--FLSALIDFAGH--AGKVEAAFEILQEAKN 332 (713)
Q Consensus 280 ~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~~~~~--~g~~~~a~~~~~~m~~ 332 (713)
.+.+++..|.++|+.+... +.++.. .+..+..+|.. .-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666655 333332 23333333332 3345566666655444
No 429
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.13 E-value=4.2e+02 Score=23.44 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005130 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 318 (713)
.++..+.+.+..-.|.++++++.+.+...+..|.-..+..+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444555555555555544444444333334333333
No 430
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.26 E-value=9.9e+02 Score=25.43 Aligned_cols=130 Identities=11% Similarity=0.043 Sum_probs=0.0
Q ss_pred cchhHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHH--------
Q 005130 25 VSEQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST-------- 94 (713)
Q Consensus 25 ~~~~~~~~~~L~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 94 (713)
.++-++=+...+ +..--....+-.+.+.+.+...|+...-..++.......++.+-++..+....|+.++
T Consensus 37 iDEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l 116 (404)
T PF10255_consen 37 IDEFVYQFQSFCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPL 116 (404)
T ss_pred HHHHHHHhhhHHHHhhhccCCCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccH
Q ss_pred --------HHHHHHHHHhCCChHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005130 95 --------FNMLMSVCASSKDSEGAFQVL-------RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (713)
Q Consensus 95 --------~~~li~~~~~~g~~~~A~~l~-------~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (713)
.-.|++.++-.||+..|++++ ..+...-..-...+|-.+.-+|.-.+++.+|.++|....
T Consensus 117 ~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 117 YKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 431
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.15 E-value=1e+03 Score=25.32 Aligned_cols=62 Identities=16% Similarity=0.036 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005130 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (713)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 261 (713)
.--|++...-.|+.....+.++.|..+-.+-.|...+---+.-+|.-.+++.+|.++|-.+.
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677787777777777766544544543222334456666777777777776553
No 432
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=21.13 E-value=1.1e+03 Score=25.83 Aligned_cols=48 Identities=4% Similarity=-0.047 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005130 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (713)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 210 (713)
|....-+++..+..+....-+..+..+|..-| -+...|..++..|..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en 112 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN 112 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc
Confidence 34444455555555555555555555555443 2344455555555554
No 433
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=21.09 E-value=9e+02 Score=24.73 Aligned_cols=62 Identities=6% Similarity=0.048 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005130 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (713)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 207 (713)
+.-+.++++..+.. +.+...+..+|..+.+..+.++..+-++++.... +-+...|...|...
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHH
Confidence 34445555555542 2345555566666666666666666666666542 22445555555433
No 434
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=21.06 E-value=8.7e+02 Score=24.52 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHH---------HHHCCCCCC--
Q 005130 99 MSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSG-----KVDAMFEVFHE---------MVNAGIEPN-- 161 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~~~~~li~~~~~~g-----~~~~A~~~~~~---------m~~~g~~~~-- 161 (713)
+-++++.|..+ ...+++.+... --.++...+..++..+.... ..+.....|+. +.+.|.++.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HHcCC-----HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 005130 162 VHTYGALIDGC-AKAGQ-----VAKAFGAYGIMRSKNV----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (713)
Q Consensus 162 ~~~~~~li~~~-~~~g~-----~~~A~~l~~~m~~~g~----~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 231 (713)
......+++.. ..... .+.|.+.|+.....+. ..+...-..++....+.|+.+.-..+++.... .
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-----~ 198 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-----S 198 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-----T
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-----c
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 005130 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC-SQTGDWEFACSVYDD 294 (713)
Q Consensus 232 pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~l~~~ 294 (713)
++...-..++.+.+...+.+...++++.+...+..++...+..+.... ...--.+.+.+.+..
T Consensus 199 ~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 199 TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 435
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.98 E-value=8.6e+02 Score=24.46 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc
Q 005130 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~ 247 (713)
++..+.+.++.....+.+..+. ....-...+......|++..|++++.+... +...+-...|-.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~----------~l~~l~~~~c~~ 167 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ----------LLEELKGYSCVR 167 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------HHHhcccchHHH
Q ss_pred CCHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005130 248 GQVDRAREVYKMIHKY--------NIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (713)
Q Consensus 248 g~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (713)
.-.....+....+.+. -...|+..|..++.+|.-.|+.+.+.+-+..
T Consensus 168 ~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 168 HLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 436
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=20.93 E-value=7.5e+02 Score=25.10 Aligned_cols=43 Identities=5% Similarity=0.087 Sum_probs=24.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005130 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 290 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
++++.|.+.++.|.-..+.-+.-.+.+.=.+.+.+.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555566666666655555555555555555566666665543
No 437
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=20.53 E-value=2.4e+02 Score=33.73 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=46.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC
Q 005130 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (713)
Q Consensus 28 ~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (713)
.+..|..|-....+.+++++|..|...|+.+....++......+.+.+.+.+|..+|....
T Consensus 81 fl~~~~~~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Gi 141 (974)
T KOG1166|consen 81 FLILWCSLELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGI 141 (974)
T ss_pred HHHHHHhHHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556677888888999998888877777777777777778888888888887654
No 438
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.23 E-value=1.6e+03 Score=27.43 Aligned_cols=131 Identities=11% Similarity=0.180 Sum_probs=75.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC-CCC--HHHHHHHHHHHHhCCChHHH
Q 005130 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPT--LSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A 111 (713)
++..|....|+..|.+... |+..++ .++..+....-.+..+.+. ..+ ++. ..-|-..++.+-+.+..+.+
T Consensus 930 yl~tge~~kAl~cF~~a~S-g~ge~~-aL~~lv~~~~p~~~sv~dG-----~t~s~e~t~lhYYlkv~rlle~hn~~E~v 1002 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALS-GFGEGN-ALRKLVYFLLPKRFSVADG-----KTPSEELTALHYYLKVVRLLEEHNHAEEV 1002 (1480)
T ss_pred eecCCchHHHHHHHHHHhh-ccccHH-HHHHHHHHhcCCCCchhcC-----CCCCchHHHHHHHHHHHHHHHHhccHHHH
Confidence 4468888899999988875 433333 4444333222111000000 011 122 34467778888888888988
Q ss_pred HHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHH
Q 005130 112 FQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQVA 179 (713)
Q Consensus 112 ~~l~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~ 179 (713)
.++-...++. +++| ..+++++.+.....|.+.+|.+..-. .||.. ...-++..++.+|+++
T Consensus 1003 cQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1003 CQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchH
Confidence 8888777764 2332 34677777777777777777655432 24433 4455666667777654
No 439
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=9.6e+02 Score=24.72 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=44.2
Q ss_pred HHHHcCChhHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHH-HHHHH
Q 005130 136 TCAKSGKVDAMFEVFHEMVNA---GIEPNVHTY--GALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVV-FNALI 204 (713)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~-~~~li 204 (713)
..-+.++.++|++.++++.+. --.|+.+.| ..+.+++...|+..++.+++++..+ .|++|++.+ |+.+-
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 334445666777666666542 124455544 3445556667777777777777665 566665433 45554
Q ss_pred HHHHh-cCCHHH
Q 005130 205 TACGQ-SGAVDR 215 (713)
Q Consensus 205 ~~~~~-~g~~~~ 215 (713)
.-|.+ .|++..
T Consensus 164 sqYyk~~~d~a~ 175 (380)
T KOG2908|consen 164 SQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHhHHH
Confidence 44443 344443
Done!