BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005131
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H5G|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
pdb|2H5G|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
Length = 463
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/369 (52%), Positives = 259/369 (70%), Gaps = 8/369 (2%)
Query: 351 PLLSRLALKSGKISSLANSVR-VLANMEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVF 409
PLL RL+L + K++SLA +R + A+ +D +G +L++T++A L LE+ + P+GVLL++F
Sbjct: 89 PLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIF 148
Query: 410 ESRPDALVQIAALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSRE 469
ESRPD L Q+AALAI SGNGLLLKGGKEA SN ILH + E + + + + LV +RE
Sbjct: 149 ESRPDCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTRE 208
Query: 470 EIPXXXXXXXXXXXXXPRGSNRLVSQIKESTK-IPVLGHADGICHIYVDKSADMDMAKQI 528
E+ PRGS++LV I+++ K IPV GH++GICH YVD A +D ++
Sbjct: 209 EVEDLCRLDKXIDLIIPRGSSQLVRDIQKAAKGIPVXGHSEGICHXYVDSEASVDKVTRL 268
Query: 529 VLDAKVDYPAACNAMETLLIHQDLVPTG-FNELIDNLRSEGVTLYGGPRASSLLNIP--E 585
V D+K +YPAACNA+ETLLIH+DL+ T F+++ID LR E V ++ GP+ +S L E
Sbjct: 269 VRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDXLRVEQVKIHAGPKFASYLTFSPSE 328
Query: 586 PNSFHHEYNSMACTIEIVDDVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVF 645
S EY + IE+VD+V AI HIH++GS HTD I+T D AE FL+ VDSA VF
Sbjct: 329 VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVF 388
Query: 646 HNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSGQVVD--GDKG-V 702
NASTRF DG RFGLGAEVGISTSRIHARGPVG+EGLLTT+W+L+G VV + G +
Sbjct: 389 WNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSL 448
Query: 703 EYIHEDVNI 711
+Y+HE++ I
Sbjct: 449 KYLHENLPI 457
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 291 bits (745), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 170/453 (37%), Positives = 257/453 (56%), Gaps = 36/453 (7%)
Query: 293 REMAVAARESSRRLQAMSSEDRKKXXXXXXXXXXXXXXXXXXXXXXXVAAAEQEGYEKPL 352
+++A AR++ L+ +S+E R +A A++ G L
Sbjct: 17 QQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSL 76
Query: 353 LSRLAL-KSGKISSLANSVRVLANMEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES 411
L RL L K K ++ +A +EDP+G + +L DGL L + + P+GVLL++FES
Sbjct: 77 LKRLDLFKGDKFEVXLQGIKDVAELEDPVGKVKXARELDDGLTLYQVTAPVGVLLVIFES 136
Query: 412 RPDALVQIAALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGER-----LIGLVT 466
RP+ + I AL+I+SGN +LKGGKE+ + KI+ + I + E + L+
Sbjct: 137 RPEVIANITALSIKSGNAAILKGGKESVNTFREXAKIVNDTIAQFQSETGVPVGSVQLIE 196
Query: 467 SREEIPXXXXXXXXXXXXXPRGSNRLVSQIKESTKIPVLGHADGICHIYVDKSADMDMAK 526
+R+++ PRGSN LV +IK++TKIPVLGHADGIC IY+D+ AD+ AK
Sbjct: 197 TRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDADLIKAK 256
Query: 527 QIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDNLRSEG-VTLYG------------ 573
+I LDAK +YPA CNA ETLLI+ + + E+++NL EG VT++
Sbjct: 257 RISLDAKTNYPAGCNAXETLLINPKF--SKWWEVLENLTLEGGVTIHATKDLKTAYFDKL 314
Query: 574 ---GPRASSL----LNIPEPNSFHHEYNSMACTIEIVDDVHAAIGHIHQHGSGHTDCIIT 626
G ++ ++ E F E+ S+ + V +AI HI+ H S HTD I+T
Sbjct: 315 NELGKLTEAIQCKTVDADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVT 374
Query: 627 NDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 686
+ AE F + VDS+ V+ NASTRF DG R+G GAEVGISTS+IHARGPVG++GL++ +
Sbjct: 375 ENKANAEKFXKGVDSSGVYWNASTRFADGFRYGFGAEVGISTSKIHARGPVGLDGLVSYQ 434
Query: 687 WILKGSGQVVD------GDKGVEYIHEDVNIES 713
+ ++G GQV G+K ++H+D++I++
Sbjct: 435 YQIRGDGQVASDYLGAGGNKA--FVHKDLDIKT 465
>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
Length = 444
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 203/366 (55%), Gaps = 11/366 (3%)
Query: 340 VAAAEQEGYEKPLLSRLALKSGKISSLANSVRVLANMEDPIGHILKKTQLADGLFLEKTS 399
VA A+ +G + + RL L + ++ +R +A + DPIG + G+ + +
Sbjct: 76 VARAKDKGLDAAFVDRLTLSDKALKTMVEGLRQVATLPDPIGEMSNLKYRPSGIQVGQMR 135
Query: 400 CPLGVLLIVFESRPDALVQIAALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPE-NVG 458
PLGV+ I++ESRP+ + AAL ++SGN +L+GG EA SN L K+I E + E +
Sbjct: 136 VPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALESNTALAKLIGEGLAEAGLP 195
Query: 459 ERLIGLVTS--REEIPXXXXXXXXXXXXXPRGSNRLVSQIKESTKIPVLGHADGICHIYV 516
+ + +V + R + PRG L+ ++ ++P++ H DGICH+YV
Sbjct: 196 QDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEARVPMIKHLDGICHVYV 255
Query: 517 DKSADMDMAKQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDNLRSEGVTLYGGPR 576
D A + A + +AK CN METLL+ + + P + L R +GV L
Sbjct: 256 DDRASVTKALTVCDNAKTHRYGTCNTMETLLVARGIAPAVLSPLGRLYREKGVELRVDAD 315
Query: 577 ASSLLNIP--------EPNSFHHEYNSMACTIEIVDDVHAAIGHIHQHGSGHTDCIITND 628
A ++L + EY + I+IVD + AAI HI+++GS HTD I+T D
Sbjct: 316 ARAVLEAAGVGPLVDATDEDWRTEYLAPVLAIKIVDGIDAAIEHINEYGSHHTDAIVTED 375
Query: 629 SEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 688
+ A FLR+VDSA+V NASTRF DG FGLGAE+GIS ++HARGPVG+EGL + +++
Sbjct: 376 HDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISNDKLHARGPVGLEGLTSLKYV 435
Query: 689 LKGSGQ 694
+ G G+
Sbjct: 436 VLGHGE 441
>pdb|1O20|A Chain A, Crystal Structure Of Gamma-glutamyl Phosphate Reductase
(tm0293) From Thermotoga Maritima At 2.00 A Resolution
Length = 427
Score = 232 bits (592), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 204/362 (56%), Gaps = 6/362 (1%)
Query: 340 VAAAEQEGYEKPLLSRLALKSGKISSLANSVRVLANMEDPIGHILKKTQLADGLFLEKTS 399
V A + G ++ L+ RLAL +I + + ++DP+G ++ DGL + +
Sbjct: 64 VEKARERGVKESLVDRLALNDKRIDEXIKACETVIGLKDPVGEVIDSWVREDGLRIARVR 123
Query: 400 CPLGVLLIVFESRPDALVQIAALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPEN-VG 458
P+G + I++ESRP+ V+ LA++SGN +LL+GG +A SN + I E + E +
Sbjct: 124 VPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSAIREALKETEIP 183
Query: 459 ERLIGLV--TSREEIPXXXXXXXXXXXXXPRGSNRLVSQIKESTKIPVLGHADGICHIYV 516
E + + T R + PRG L+S ++++ +PVL G CHI+V
Sbjct: 184 ESSVEFIENTDRSLVLEXIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFV 243
Query: 517 DKSADMDMAKQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDNLRSEGVTLYGGPR 576
D+SAD+ A ++++AK P CNA E LL+H+ + +++ LR GV + G +
Sbjct: 244 DESADLKKAVPVIINAKTQRPGTCNAAEKLLVHEKIAKEFLPVIVEELRKHGVEVRGCEK 303
Query: 577 ASSLLNIPEP---NSFHHEYNSMACTIEIVDDVHAAIGHIHQHGSGHTDCIITNDSEAAE 633
++ P + + EY + I++V +V AI HI ++ +GH++ I+T + A+
Sbjct: 304 TREIVPDVVPATEDDWPTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAK 363
Query: 634 IFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSG 693
F+ ++D+AAV+ NASTRF DG +FG GAE+GIST R HARGPVG+ L T ++++ G
Sbjct: 364 KFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELTTYKFVVLGEY 423
Query: 694 QV 695
V
Sbjct: 424 HV 425
>pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5V|B Chain B, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5T|H Chain H, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|B Chain B, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|C Chain C, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|D Chain D, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|E Chain E, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|F Chain F, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|G Chain G, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
Length = 367
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 138/304 (45%), Gaps = 29/304 (9%)
Query: 8 VKDVKRIVVKVGTAVVTRSDXXXXXXXXXXXCEQIKELNSQGYEVILVSSGAVXXXXXXX 67
+ D + +VVK+GT+V+T Q +L++ G+ +++V+SGA+
Sbjct: 1 MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGRE-- 58
Query: 68 XXXXXINSSFADLQKPQIELDGKACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRD 127
+ + +L P + AAVGQ+ ++ L++ LFS + Q+L+T D D
Sbjct: 59 ------HLGYPEL--PATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMED 110
Query: 128 KEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXX 187
+E +T+++LL V+PV NENDAV+T + DND+
Sbjct: 111 RERFLNARDTLRALLDNNVVPVINENDAVATAEIK-------VGDNDNLSALAAILAGAD 163
Query: 188 XXXXXSDVEGLYSGPP-SDPQSKLI-DTYVKERHQGEITFGDKSRVGRGGMTXXXXXXXX 245
+D +GLY+ P S+PQ++LI D Y + I S +G GGM+
Sbjct: 164 KLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADV 223
Query: 246 XXXXGIPVVITSGYSDENILKVLQGERIGTLFHQDAHILD----------PFNEVGAREM 295
GI +I +G I V++G +GTLFH A L+ P E+ E
Sbjct: 224 ACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEG 283
Query: 296 AVAA 299
A AA
Sbjct: 284 ATAA 287
>pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The
Glutamate 5 Kinase Of Escherichia Coli
Length = 259
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 129/276 (46%), Gaps = 19/276 (6%)
Query: 8 VKDVKRIVVKVGTAVVTRSDXXXXXXXXXXXCEQIKELNSQGYEVILVSSGAVXXXXXXX 67
+ D + +VVK+GT+V+T Q +L++ G+ +++V+SGA+
Sbjct: 1 MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGRE-- 58
Query: 68 XXXXXINSSFADLQKPQIELDGKACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRD 127
+ + +L P + AAVGQ+ ++ L++ LFS + Q+L+T D D
Sbjct: 59 ------HLGYPEL--PATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMED 110
Query: 128 KEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXX 187
+E +T+++LL V+PV NENDAV+T + DND+
Sbjct: 111 RERFLNARDTLRALLDNNVVPVINENDAVATAEIK-------VGDNDNLSALAAILAGAD 163
Query: 188 XXXXXSDVEGLYSGPP-SDPQSKLI-DTYVKERHQGEITFGDKSRVGRGGMTXXXXXXXX 245
+D +GLY+ P S+PQ++LI D Y + I S +G GGM+
Sbjct: 164 KLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADV 223
Query: 246 XXXXGIPVVITSGYSDENILKVLQGERIGTLFHQDA 281
GI +I +G I V++G +GTLFH A
Sbjct: 224 ACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA 259
>pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|B Chain B, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|C Chain C, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|D Chain D, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
Length = 251
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 43/279 (15%)
Query: 12 KRIVVKVGTAVVTRSDXXXXXXXXXXXCEQIKELNS------QGYEVILVSSGAVXXXXX 65
KRIVVKVG+ V++ + E++K L + + YEVILV+S A+
Sbjct: 2 KRIVVKVGSHVISEENTLS--------FERLKNLVAFLAKLXEKYEVILVTSAAISAGHT 53
Query: 66 XXXXXXXINSSFADLQKPQIELDGKACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDF 125
D+ + + ++ + AA+GQ ++++Y+ L ++ + Q+L+T DF
Sbjct: 54 KL-----------DIDRKNL-INKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDF 101
Query: 126 RDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXX 185
++ + ++L ++P+ NENDA + + +F DNDS
Sbjct: 102 DSRKATKHAKNAIDXXINLGILPIINENDATAIEEI-------VFGDNDSLSAYATHFFD 154
Query: 186 XXXXXXXSDVEGLYSGPPSD-PQSKLID--TYVKERH-QGEITFGDKSRVGRGGMTXXXX 241
SD++G Y PS+ +K ++ T++KE Q I G S G GG+
Sbjct: 155 ADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTG--SEHGTGGIVTKLK 212
Query: 242 XXXXXXXXGIPVVITSGYSDENILK--VLQGERI-GTLF 277
+ SG+ D ++ K +L+ ++I GTLF
Sbjct: 213 AAKFLLEHNKKXFLASGF-DLSVAKTFLLEDKQIGGTLF 250
>pdb|3SZA|A Chain A, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZA|B Chain B, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZB|A Chain A, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
pdb|3SZB|B Chain B, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
Length = 469
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 11/186 (5%)
Query: 391 DGLFLEKTSCPLGVLLIV--FESRPDALVQIAALAIRSGNGLLLKGGKEAKRSNAILHKI 448
D L++ S PLGV+L++ + + +Q AI +GN ++LK + ++ ++L I
Sbjct: 112 DELYIH--SEPLGVVLVIGTWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLATI 169
Query: 449 ITEVIPENVGERLIGLVTSREEIPXXXXXXXXXXXXXPRGSNRLVSQIKESTKIPVLGHA 508
I + + +++ + G V E+ G + + K T PV
Sbjct: 170 IPQYLDKDLYPVINGGVPETTELLKERFDHILYTGSTGVGKIIMTAAAKHLT--PVTLEL 227
Query: 509 DGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDNLRSE 567
G YVDK+ D+D+A ++I ++ C A + +L P+ N++++ L+
Sbjct: 228 GGKSPCYVDKNCDLDVACRRIAWGKFMNSGQTCVAPDYILCD----PSIQNQIVEKLKKS 283
Query: 568 GVTLYG 573
YG
Sbjct: 284 LKEFYG 289
>pdb|1AD3|A Chain A, Class 3 Aldehyde Dehydrogenase Complex With Nicotinamide-
Adenine-Dinucleotide
pdb|1AD3|B Chain B, Class 3 Aldehyde Dehydrogenase Complex With Nicotinamide-
Adenine-Dinucleotide
Length = 452
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 13/200 (6%)
Query: 377 EDPIGHILKKTQLADGLFLEKTSCPLGVLLIV--FESRPDALVQIAALAIRSGNGLLLKG 434
++P+ + Q D L++ S PLGV+L++ + + +Q A+ +GN ++LK
Sbjct: 83 DEPVAKTRQTQQ--DDLYIH--SEPLGVVLVIGAWNYPFNLTIQPMVGAVAAGNAVILKP 138
Query: 435 GKEAKRSNAILHKIITEVIPENVGERLIGLVTSREEIPXXXXXXXXXXXXXPRGSNRLVS 494
+ + +L +I + + +N+ + G V E+ G + +
Sbjct: 139 SEVSGHMADLLATLIPQYMDQNLYLVVKGGVPETTELLKERFDHIMYTGSTAVGKIVMAA 198
Query: 495 QIKESTKIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLV 553
K T PV G YVDK D+D+A ++I ++ C A + +L
Sbjct: 199 AAKHLT--PVTLELGGKSPCYVDKDCDLDVACRRIAWGKFMNSGQTCVAPDYILCD---- 252
Query: 554 PTGFNELIDNLRSEGVTLYG 573
P+ N++++ L+ YG
Sbjct: 253 PSIQNQIVEKLKKSLKDFYG 272
>pdb|4FJS|A Chain A, Crystal Structure Of Ureidoglycolate Dehydrogenase Enzyme
In Apo Form
pdb|4FJS|B Chain B, Crystal Structure Of Ureidoglycolate Dehydrogenase Enzyme
In Apo Form
pdb|4FJU|A Chain A, Crystal Structure Of Ureidoglycolate Dehydrogenase In
Ternary Complex With Nadh And Glyoxylate
pdb|4FJU|B Chain B, Crystal Structure Of Ureidoglycolate Dehydrogenase In
Ternary Complex With Nadh And Glyoxylate
Length = 351
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 100 IMALYDTLFSELDLTSAQLLVTDNDFRDKE-FRSQLSETVKSLLSLRVIPVFNE 152
+ ++YD L + +L +++ N F E FR LS+T++ L ++ P FN+
Sbjct: 250 VSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQ 303
>pdb|4H8A|A Chain A, Crystal Structure Of Ureidoglycolate Dehydrogenase In
Binary Complex With Nadh
pdb|4H8A|B Chain B, Crystal Structure Of Ureidoglycolate Dehydrogenase In
Binary Complex With Nadh
Length = 339
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 100 IMALYDTLFSELDLTSAQLLVTDNDFRDKE-FRSQLSETVKSLLSLRVIPVFNE 152
+ ++YD L + +L +++ N F E FR LS+T++ L ++ P FN+
Sbjct: 250 VSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQ 303
>pdb|1XRH|A Chain A, Crystal Structure Of Ureidoglycolate Dehydrogenase From
Escherichia Coli
pdb|1XRH|B Chain B, Crystal Structure Of Ureidoglycolate Dehydrogenase From
Escherichia Coli
pdb|1XRH|C Chain C, Crystal Structure Of Ureidoglycolate Dehydrogenase From
Escherichia Coli
pdb|1XRH|D Chain D, Crystal Structure Of Ureidoglycolate Dehydrogenase From
Escherichia Coli
pdb|1XRH|E Chain E, Crystal Structure Of Ureidoglycolate Dehydrogenase From
Escherichia Coli
pdb|1XRH|F Chain F, Crystal Structure Of Ureidoglycolate Dehydrogenase From
Escherichia Coli
pdb|1XRH|G Chain G, Crystal Structure Of Ureidoglycolate Dehydrogenase From
Escherichia Coli
pdb|1XRH|H Chain H, Crystal Structure Of Ureidoglycolate Dehydrogenase From
Escherichia Coli
Length = 351
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 100 IMALYDTLFSELDLTSAQLLVTDNDFRDKE-FRSQLSETVKSLLSLRVIPVFNE 152
+ + YD L + +L +++ N F E FR LS+T + L ++ P FN+
Sbjct: 250 VSSXYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTXRELNAITPAPGFNQ 303
>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|B Chain B, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|C Chain C, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|D Chain D, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|E Chain E, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|F Chain F, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
Length = 281
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 250 GIPVVITSGYSDENILKVLQGERIGTL 276
G+P+++ + +D NI + ++GE+IGTL
Sbjct: 252 GMPILVFNLLTDGNIARAVRGEKIGTL 278
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 661 GAEVGISTSRIHARGPVGVEGLLTTRWILKGSGQVVDGDKGVEYIHEDVN 710
G EV +ST R H E L W++ +G V+ +G Y HE ++
Sbjct: 37 GIEVVVSTGRAHFDVXSIFEPLGIKTWVISANGAVIHDPEGRLYHHETID 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,633,870
Number of Sequences: 62578
Number of extensions: 659313
Number of successful extensions: 1554
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1528
Number of HSP's gapped (non-prelim): 17
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)