Query 005131
Match_columns 713
No_of_seqs 350 out of 3043
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 16:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wme_A BADH, betaine aldehyde 100.0 9.4E-86 3.2E-90 735.3 42.2 399 266-693 28-484 (490)
2 3ifg_A Succinate-semialdehyde 100.0 1.5E-82 5E-87 710.7 41.0 397 266-691 34-483 (484)
3 2h5g_A Delta 1-pyrroline-5-car 100.0 2.6E-82 8.9E-87 704.2 41.5 439 262-711 9-457 (463)
4 3ek1_A Aldehyde dehydrogenase; 100.0 2.9E-82 9.8E-87 710.3 40.9 401 265-694 53-504 (504)
5 3rh9_A Succinate-semialdehyde 100.0 1.4E-82 4.8E-87 713.2 37.9 412 266-707 33-502 (506)
6 3prl_A NADP-dependent glyceral 100.0 2.9E-82 9.8E-87 711.2 40.4 415 266-707 33-501 (505)
7 3r31_A BADH, betaine aldehyde 100.0 6.8E-82 2.3E-86 709.3 39.5 398 266-696 36-492 (517)
8 3ros_A NAD-dependent aldehyde 100.0 8.2E-82 2.8E-86 704.0 39.4 397 266-693 10-459 (484)
9 4f3x_A Putative aldehyde dehyd 100.0 1.4E-81 4.9E-86 704.4 40.9 399 266-693 46-498 (498)
10 3ed6_A Betaine aldehyde dehydr 100.0 1.1E-81 3.9E-86 708.0 39.4 400 265-693 53-511 (520)
11 1a4s_A ALDH, betaine aldehyde 100.0 3.9E-81 1.3E-85 702.4 41.5 399 266-694 42-498 (503)
12 3k2w_A Betaine-aldehyde dehydr 100.0 2.4E-81 8.1E-86 703.8 39.1 399 266-693 34-489 (497)
13 3u4j_A NAD-dependent aldehyde 100.0 3.2E-81 1.1E-85 705.7 40.2 402 266-696 44-502 (528)
14 3pqa_A Lactaldehyde dehydrogen 100.0 5E-81 1.7E-85 697.9 38.4 413 266-707 18-482 (486)
15 3iwj_A Putative aminoaldehyde 100.0 1E-80 3.5E-85 699.6 40.2 401 266-693 29-490 (503)
16 3jz4_A Succinate-semialdehyde 100.0 2.1E-80 7.2E-85 694.6 42.3 397 266-691 31-480 (481)
17 2o2p_A Formyltetrahydrofolate 100.0 6.4E-81 2.2E-85 701.5 37.8 400 266-691 58-516 (517)
18 4e4g_A Methylmalonate-semialde 100.0 6.5E-81 2.2E-85 702.0 37.1 402 265-693 47-506 (521)
19 1o04_A Aldehyde dehydrogenase, 100.0 1.3E-80 4.3E-85 697.0 39.0 397 267-692 42-495 (500)
20 1bxs_A Aldehyde dehydrogenase; 100.0 1.7E-80 5.8E-85 696.2 39.3 398 266-692 42-496 (501)
21 1wnd_A Putative betaine aldehy 100.0 3.6E-80 1.2E-84 692.5 41.9 397 265-691 43-494 (495)
22 3qan_A 1-pyrroline-5-carboxyla 100.0 1.6E-80 5.6E-85 701.3 39.2 413 264-707 55-534 (538)
23 3b4w_A Aldehyde dehydrogenase; 100.0 2.3E-80 7.9E-85 694.8 38.8 397 266-692 30-482 (495)
24 2imp_A Lactaldehyde dehydrogen 100.0 1.3E-79 4.5E-84 687.9 43.6 398 265-691 27-478 (479)
25 2ve5_A BADH, betaine aldehyde 100.0 8.6E-80 3E-84 691.8 42.2 400 266-694 28-485 (490)
26 2d4e_A 5-carboxymethyl-2-hydro 100.0 4.6E-80 1.6E-84 695.6 39.7 400 264-692 46-505 (515)
27 1uxt_A Glyceraldehyde-3-phosph 100.0 5.3E-80 1.8E-84 692.8 39.8 400 266-692 38-492 (501)
28 1o20_A Gamma-glutamyl phosphat 100.0 1.5E-79 5.2E-84 677.1 42.5 408 289-697 13-427 (427)
29 3r64_A NAD dependent benzaldeh 100.0 6.9E-80 2.4E-84 693.7 38.7 411 266-705 34-505 (508)
30 3i44_A Aldehyde dehydrogenase; 100.0 6.6E-80 2.3E-84 690.8 38.1 394 265-690 46-496 (497)
31 1euh_A NADP dependent non phos 100.0 1.2E-79 4E-84 687.6 39.7 397 266-691 24-473 (475)
32 2w8n_A Succinate-semialdehyde 100.0 2.1E-79 7.3E-84 686.3 41.8 397 266-691 32-485 (487)
33 2j6l_A Aldehyde dehydrogenase 100.0 2.9E-79 1E-83 687.3 41.0 400 266-691 43-498 (500)
34 3etf_A Putative succinate-semi 100.0 1.6E-79 5.6E-84 685.1 38.4 396 266-691 13-460 (462)
35 4dng_A Uncharacterized aldehyd 100.0 3.1E-79 1.1E-83 686.4 37.6 400 266-693 28-479 (485)
36 1uzb_A 1-pyrroline-5-carboxyla 100.0 1.8E-78 6E-83 683.6 41.2 400 264-691 55-515 (516)
37 4ghk_A Gamma-glutamyl phosphat 100.0 1.2E-78 4E-83 673.3 37.2 407 289-696 25-443 (444)
38 4h7n_A Aldehyde dehydrogenase; 100.0 1E-78 3.5E-83 679.8 36.6 397 266-693 12-464 (474)
39 3sza_A Aldehyde dehydrogenase, 100.0 3.9E-78 1.3E-82 672.4 40.8 387 288-693 16-449 (469)
40 1t90_A MMSDH, probable methylm 100.0 1.2E-78 4E-83 680.8 36.8 397 266-692 27-480 (486)
41 3lns_A Benzaldehyde dehydrogen 100.0 1.1E-77 3.6E-82 668.6 40.3 402 262-691 8-456 (457)
42 3ty7_A Putative aldehyde dehyd 100.0 4E-78 1.4E-82 676.3 34.9 391 266-690 29-475 (478)
43 1vlu_A Gamma-glutamyl phosphat 100.0 5.4E-76 1.8E-80 654.4 39.9 413 291-711 15-463 (468)
44 4e3x_A Delta-1-pyrroline-5-car 100.0 2.7E-75 9.3E-80 659.8 37.1 397 266-692 83-551 (563)
45 3ju8_A Succinylglutamic semial 100.0 4E-75 1.4E-79 652.8 37.5 392 266-693 26-472 (490)
46 3v4c_A Aldehyde dehydrogenase 100.0 1.7E-75 5.7E-80 661.6 34.3 404 264-689 44-515 (528)
47 1ez0_A ALDH, aldehyde dehydrog 100.0 2E-75 6.8E-80 658.4 33.6 402 266-690 13-481 (510)
48 4f9i_A Proline dehydrogenase/d 100.0 1E-74 3.5E-79 688.8 40.2 400 265-693 550-1011(1026)
49 2y53_A Aldehyde dehydrogenase 100.0 2.2E-73 7.7E-78 645.1 37.9 393 266-691 28-518 (534)
50 3haz_A Proline dehydrogenase; 100.0 5E-73 1.7E-77 672.9 37.6 389 285-693 545-988 (1001)
51 3k9d_A LMO1179 protein, aldehy 100.0 1.7E-69 5.9E-74 603.6 33.3 381 288-696 10-453 (464)
52 3my7_A Alcohol dehydrogenase/a 100.0 7E-66 2.4E-70 572.7 29.7 383 287-692 4-449 (452)
53 2j5v_A Glutamate 5-kinase; pro 100.0 8.6E-38 3E-42 335.1 22.0 255 8-280 1-258 (367)
54 2ako_A Glutamate 5-kinase; str 100.0 5.7E-36 2E-40 307.4 22.8 245 11-277 1-250 (251)
55 2rd5_A Acetylglutamate kinase- 100.0 1.4E-33 4.9E-38 296.1 17.3 246 11-279 36-298 (298)
56 3ll9_A Isopentenyl phosphate k 100.0 1.8E-33 6.1E-38 290.5 16.1 253 11-278 2-266 (269)
57 2v5h_A Acetylglutamate kinase; 100.0 3.2E-33 1.1E-37 295.5 18.3 248 10-280 48-311 (321)
58 2ap9_A NAG kinase, acetylgluta 100.0 6E-33 2.1E-37 291.7 18.9 246 10-280 24-291 (299)
59 3d40_A FOMA protein; fosfomyci 100.0 4.4E-33 1.5E-37 290.1 15.6 247 11-280 23-283 (286)
60 3nwy_A Uridylate kinase; allos 100.0 4.3E-32 1.5E-36 279.3 21.3 237 3-278 42-280 (281)
61 2bty_A Acetylglutamate kinase; 100.0 4.5E-32 1.5E-36 283.0 18.4 243 11-280 21-280 (282)
62 2buf_A Acetylglutamate kinase; 100.0 7.3E-32 2.5E-36 283.3 19.9 245 10-280 25-297 (300)
63 2va1_A Uridylate kinase; UMPK, 100.0 1.7E-31 5.7E-36 274.3 22.0 236 3-278 16-255 (256)
64 3ek6_A Uridylate kinase; UMPK 100.0 3.2E-31 1.1E-35 269.3 23.6 230 9-279 7-241 (243)
65 3l86_A Acetylglutamate kinase; 100.0 1.1E-31 3.9E-36 276.1 19.1 220 10-261 35-272 (279)
66 2e9y_A Carbamate kinase; trans 100.0 1.1E-31 3.9E-36 283.5 19.0 254 8-279 1-315 (316)
67 3ll5_A Gamma-glutamyl kinase r 100.0 1E-31 3.4E-36 274.4 18.0 240 10-277 2-248 (249)
68 4axs_A Carbamate kinase; oxido 100.0 1.1E-31 3.7E-36 281.7 17.8 264 3-278 16-331 (332)
69 2j4j_A Uridylate kinase; trans 100.0 3.3E-31 1.1E-35 267.6 20.1 220 12-279 1-225 (226)
70 1ybd_A Uridylate kinase; alpha 100.0 1.2E-30 4E-35 266.0 22.9 231 10-279 6-239 (239)
71 2a1f_A Uridylate kinase; PYRH, 100.0 1.2E-30 4E-35 267.0 22.2 232 10-280 7-241 (247)
72 4a7w_A Uridylate kinase; trans 100.0 1.3E-30 4.4E-35 264.6 22.0 230 10-277 6-239 (240)
73 2egx_A Putative acetylglutamat 100.0 5.8E-31 2E-35 272.4 17.2 236 13-277 1-268 (269)
74 2ogx_B Molybdenum storage prot 100.0 2.2E-30 7.6E-35 267.8 20.8 231 12-279 37-269 (270)
75 1e19_A Carbamate kinase-like c 100.0 1.1E-30 3.6E-35 275.6 18.2 255 10-279 1-314 (314)
76 1z9d_A Uridylate kinase, UK, U 100.0 6.2E-30 2.1E-34 262.3 23.3 232 10-280 6-241 (252)
77 2jjx_A Uridylate kinase, UMP k 100.0 8.4E-30 2.9E-34 261.6 22.6 236 7-280 8-247 (255)
78 1gs5_A Acetylglutamate kinase; 100.0 2.2E-30 7.7E-35 266.7 18.1 241 11-278 2-257 (258)
79 3k4o_A Isopentenyl phosphate k 100.0 3E-30 1E-34 265.5 18.2 244 12-280 7-265 (266)
80 2brx_A Uridylate kinase; UMP k 100.0 2.5E-30 8.4E-35 263.7 16.3 224 9-279 17-244 (244)
81 2we5_A Carbamate kinase 1; arg 100.0 4.5E-30 1.5E-34 270.9 18.7 252 10-278 1-309 (310)
82 3kzf_A Carbamate kinase; argin 100.0 1.1E-29 3.7E-34 261.3 20.8 258 8-279 2-316 (317)
83 3d2m_A Putative acetylglutamat 100.0 1.7E-29 5.8E-34 281.8 20.1 259 10-299 42-324 (456)
84 2ogx_A Molybdenum storage prot 100.0 4.1E-29 1.4E-33 258.8 18.5 228 10-280 37-272 (276)
85 3ab4_A Aspartokinase; aspartat 100.0 3.8E-29 1.3E-33 274.9 19.0 233 11-280 1-244 (421)
86 2ij9_A Uridylate kinase; struc 100.0 7.2E-29 2.5E-33 249.3 16.4 213 12-277 1-218 (219)
87 3zzh_A Acetylglutamate kinase; 100.0 8.5E-29 2.9E-33 257.6 14.9 239 12-280 49-302 (307)
88 3l76_A Aspartokinase; alloster 100.0 1.7E-28 5.8E-33 279.5 15.5 237 11-280 1-245 (600)
89 3s6g_A N-acetylglutamate kinas 100.0 4.3E-28 1.5E-32 265.5 17.2 242 11-280 58-311 (460)
90 4ab7_A Protein Arg5,6, mitocho 99.9 7.9E-28 2.7E-32 262.5 14.5 240 11-280 48-302 (464)
91 3s6k_A Acetylglutamate kinase; 99.9 2.1E-27 7.2E-32 260.1 9.4 241 12-280 62-314 (467)
92 2cdq_A Aspartokinase; aspartat 99.9 3.6E-26 1.2E-30 254.3 18.9 243 10-280 25-324 (510)
93 2j0w_A Lysine-sensitive aspart 99.9 1.1E-26 3.6E-31 255.9 14.3 241 10-280 1-292 (449)
94 3tvi_A Aspartokinase; structur 99.9 1.3E-26 4.3E-31 253.9 13.3 238 12-280 3-279 (446)
95 3c1m_A Probable aspartokinase; 99.9 1.8E-26 6E-31 256.7 13.8 242 12-280 1-301 (473)
96 4gic_A HDH, histidinol dehydro 97.1 0.16 5.3E-06 53.9 24.9 281 362-689 93-400 (423)
97 1kae_A HDH, histidinol dehydro 97.0 0.28 9.7E-06 52.1 25.4 280 362-690 87-394 (434)
98 2fiu_A Conserved hypothetical 46.0 28 0.00096 28.9 5.1 69 540-619 2-77 (99)
99 3pdw_A Uncharacterized hydrola 43.9 17 0.00059 35.5 4.2 44 9-58 4-47 (266)
100 2b30_A Pvivax hypothetical pro 43.0 25 0.00087 35.4 5.4 51 4-59 18-71 (301)
101 3qgm_A P-nitrophenyl phosphata 42.2 18 0.00061 35.4 3.9 44 10-59 7-50 (268)
102 2obb_A Hypothetical protein; s 36.9 25 0.00086 31.4 3.6 46 11-57 3-48 (142)
103 3fzq_A Putative hydrolase; YP_ 36.7 35 0.0012 33.2 5.1 46 8-58 2-47 (274)
104 1k1e_A Deoxy-D-mannose-octulos 35.9 23 0.00079 32.5 3.4 61 4-68 1-70 (180)
105 1rkq_A Hypothetical protein YI 34.9 38 0.0013 33.5 5.1 45 10-59 4-48 (282)
106 3r4c_A Hydrolase, haloacid deh 32.7 43 0.0015 32.5 5.0 45 9-57 10-54 (268)
107 2x4d_A HLHPP, phospholysine ph 31.5 30 0.001 33.4 3.5 53 1-57 2-56 (271)
108 1l6r_A Hypothetical protein TA 31.1 39 0.0013 32.4 4.2 45 10-59 4-48 (227)
109 1wr8_A Phosphoglycolate phosph 28.0 71 0.0024 30.3 5.6 45 10-59 2-46 (231)
110 3kbq_A Protein TA0487; structu 26.9 1.5E+02 0.005 27.3 7.2 66 103-188 27-92 (172)
111 2p9j_A Hypothetical protein AQ 26.7 36 0.0012 30.2 3.0 63 5-67 3-70 (162)
112 3epr_A Hydrolase, haloacid deh 26.7 30 0.001 33.8 2.5 43 10-58 4-46 (264)
113 2pr7_A Haloacid dehalogenase/e 26.1 78 0.0027 26.6 5.0 48 11-64 2-49 (137)
114 3f9r_A Phosphomannomutase; try 24.4 70 0.0024 31.0 4.8 45 10-59 3-47 (246)
115 4dw8_A Haloacid dehalogenase-l 24.2 77 0.0026 30.9 5.1 44 10-58 4-47 (279)
116 3dnp_A Stress response protein 24.1 66 0.0023 31.6 4.6 45 9-58 4-48 (290)
117 3fgh_A Transcription factor A, 22.9 1.6E+02 0.0056 21.8 5.7 36 298-333 29-64 (67)
118 1rlm_A Phosphatase; HAD family 21.6 78 0.0027 30.9 4.6 45 10-58 2-46 (271)
119 3pgv_A Haloacid dehalogenase-l 21.6 1E+02 0.0035 30.2 5.5 45 9-58 19-63 (285)
120 3l7y_A Putative uncharacterize 21.0 95 0.0033 30.8 5.2 45 10-58 36-80 (304)
121 2rbk_A Putative uncharacterize 20.2 1.1E+02 0.0036 29.6 5.2 43 12-58 3-45 (261)
122 3ewi_A N-acylneuraminate cytid 20.0 1.1E+02 0.0037 27.8 4.8 18 242-259 44-61 (168)
No 1
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=9.4e-86 Score=735.26 Aligned_cols=399 Identities=18% Similarity=0.196 Sum_probs=357.2
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.||+.++++...+ .+|+++|+++|++||+.|+++|+++|.++|++++++|++|+++|+..+.++.|++..
T Consensus 28 nP~tg~~i~~v~~a~--------~~dv~~Av~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 99 (490)
T 2wme_A 28 NPANGEVLAKVQRAS--------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLA 99 (490)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEEeCCC--------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH
Confidence 467899999987775 999999999999999999999999999999999999999999999777777776654
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
+++ ..++..+++.+++|+. ..+..+...+. ..+...+++|+|+|||++|+|| ||+.++ ++++|
T Consensus 100 ea~-----------~~~v~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~a~ 165 (490)
T 2wme_A 100 ETR-----------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAP 165 (490)
T ss_dssp HHT-----------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHH
T ss_pred HHH-----------HHHHHHHHHHHHHHHhccccccCccccc---cCCcceeEEecceeEEEEeccccCcchhhhhhHHH
Confidence 421 1468889999999987 44444444332 2456788999999999999999 999985 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHh--
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKES-- 499 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~-- 499 (713)
||++||+||+||||.||+|+.++++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+++++.
T Consensus 166 ALaaGNtVVlKPse~tp~ta~~l~~l~~ea---GlP~gv~~vv~g~g~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~~a 242 (490)
T 2wme_A 166 ALAAGNAMIFKPSEVTPLTALKLAEIYTEA---GVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASAS 242 (490)
T ss_dssp HHHTTCEEEEECCTTSCHHHHHHHHHHHHH---TCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHcCCeEEEECCcCCHHHHHHHHHHHHHh---CCCCCcEEEEeCChHHHHHHHHhCCCCCEEEEECChHHHHHHHHhhh
Confidence 999999999999999999999999999999 999999999998 47899999999999999999999999988753
Q ss_pred --cCCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHH----------------
Q 005131 500 --TKIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNEL---------------- 560 (713)
Q Consensus 500 --~~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l---------------- 560 (713)
..||++||||||||+||++|||++.| ..+++++|+|+||.|+|++|+|||+++||+|+++|
T Consensus 243 ~~~lk~v~lELGGk~p~iV~~dAdl~~A~~~~~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~vGdp~~~~ 322 (490)
T 2wme_A 243 SSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDEN 322 (490)
T ss_dssp HHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTT
T ss_pred ccCCceEEEEcCCcCeEEEccCccHHHHHHHHHHHHhccCCCcCCCceeeccchhHHHHHHHHHHHHHHhCcCCCCcccc
Confidence 26999999999999999999999999 56777888899999999999999999999999987
Q ss_pred ------------------HHHHHhCCCEE-EcCCcc-------ccccC------C-CCCCCccccccCceEEEEEeCCHH
Q 005131 561 ------------------IDNLRSEGVTL-YGGPRA-------SSLLN------I-PEPNSFHHEYNSMACTIEIVDDVH 607 (713)
Q Consensus 561 ------------------~~~~~~~Ga~l-~gg~~~-------~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~ 607 (713)
+++++++|+++ +||.+. +.|+. + ++|++++||+||||++|++|+|+|
T Consensus 323 ~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~G~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 402 (490)
T 2wme_A 323 TNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDED 402 (490)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESCHH
T ss_pred CccCCcCCHHHHHHHHHHHHHHHhcCCEEEECCcccCcccccCCCccCCEEEEcCCCCChhhhccccCCEEEEEEeCCHH
Confidence 35677899999 787642 34442 3 789999999999999999999999
Q ss_pred HHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEE
Q 005131 608 AAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 687 (713)
Q Consensus 608 eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~ 687 (713)
|||+++|+++|||++||||+|.++++++++++++|+||||++....+.+||||+|+||+|| ++|++||++||+.|+
T Consensus 403 eAi~~aN~~~yGL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PFGG~k~SG~Gr----e~G~~gl~~ft~~K~ 478 (490)
T 2wme_A 403 EAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGR----ENGLTTLAHYTRIKS 478 (490)
T ss_dssp HHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEESC----BSHHHHHHTTEEEEE
T ss_pred HHHHHHhcCCCCCeEEEEcCCHHHHHHHHHHCCeeEEEEeCCCCCCCCCCcccccccccCc----hhHHHHHHHhhceeE
Confidence 9999999999999999999999999999999999999999987778899999999999999 899999999999999
Q ss_pred EEECCC
Q 005131 688 ILKGSG 693 (713)
Q Consensus 688 v~~~~~ 693 (713)
|+++.+
T Consensus 479 v~i~~g 484 (490)
T 2wme_A 479 VQVELG 484 (490)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 998765
No 2
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=100.00 E-value=1.5e-82 Score=710.71 Aligned_cols=397 Identities=15% Similarity=0.176 Sum_probs=356.9
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++|+++|++||+.|+++++++|.++|++++++|++++++|+..+.+++|++..
T Consensus 34 ~P~tg~~i~~~~~~~--------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 105 (484)
T 3ifg_A 34 DPATGESLGTVPKMG--------AAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPLA 105 (484)
T ss_dssp CTTTCCEEEEEECBC--------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 366899999887775 999999999999999999999999999999999999999999999877777776654
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
++ ..|+..+++.+++|+. ..+..+...+.. ..+...+++++|+|||++|+|| ||+.+. ++++|
T Consensus 106 ~a------------~~ev~~~~~~l~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 171 (484)
T 3ifg_A 106 EA------------KGEIAYAASFIEWFAEEGKRVAGDTLPTP--DANKRIVVVKEPIGVCAAITPWNFPAAMIARKVGP 171 (484)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHHTTCCEEEECCS--STTEEEEEEEEECSSEEEECCSSSTTHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHhhcCcccccc--CCCceeEEEecCCcEEEEECCCcChHHHHHHHHHH
Confidence 42 2689999999999987 444444333221 1456788999999999999999 999985 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHhc-
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~- 500 (713)
||++||+||+|||+.+|+++..+++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 172 ALaaGN~VVlKps~~tp~t~~~l~~l~~~a---GlP~gv~~vv~g~~~~~g~~L~~~p~v~~v~FTGS~~~G~~i~~~aa 248 (484)
T 3ifg_A 172 ALAAGCPIVVKPAESTPFSALAMAFLAERA---GVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQSA 248 (484)
T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHHHH---TCCTTSEEECCBCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHTG
T ss_pred HHHcCCEEEEECCCCCcHHHHHHHHHHHHh---CCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHHhh
Confidence 999999999999999999999999999999 999999999998 467899999999999999999999999999875
Q ss_pred --CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHH-----------------
Q 005131 501 --KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNEL----------------- 560 (713)
Q Consensus 501 --~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l----------------- 560 (713)
.||+++|||||||+||++|||++.| ..+++++|+|+||.|++++|+|||+++||+|+++|
T Consensus 249 ~~~k~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~ 328 (484)
T 3ifg_A 249 PTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVYDAFADKLAAAVSKLKVGRGTESGA 328 (484)
T ss_dssp GGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred ccCCceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCcccCCCeEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCC
Confidence 5999999999999999999999999 56777888899999999999999999999999987
Q ss_pred -----------------HHHHHhCCCEE-EcCCc---cccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHH
Q 005131 561 -----------------IDNLRSEGVTL-YGGPR---ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGH 612 (713)
Q Consensus 561 -----------------~~~~~~~Ga~l-~gg~~---~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~ 612 (713)
+++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||||++
T Consensus 329 ~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 408 (484)
T 3ifg_A 329 TLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELVRL 408 (484)
T ss_dssp CBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCceEcCEEEecCCCCChhhCCeeeCcEEEEEEeCCHHHHHHH
Confidence 35677889999 88865 345553 3 78999999999999999999999999999
Q ss_pred HHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEEEC
Q 005131 613 IHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKG 691 (713)
Q Consensus 613 ~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~ 691 (713)
+|+++|||++||||+|.++++++++++++|+||||++....+.+||||+|+||+|+ ++|++|+++||+.|+|+++
T Consensus 409 aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~Gr----~~g~~gl~~~~~~k~v~~~ 483 (484)
T 3ifg_A 409 ANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLGR----EGSHYGIDDYVVIKYLCVA 483 (484)
T ss_dssp HHCSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCEETTEECC----BSTTTTTGGGEEEEEEEEE
T ss_pred HhCCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcCcCCC----CchHHHHHHhhceEEEEEe
Confidence 99999999999999999999999999999999999987777899999999999999 8999999999999999874
No 3
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.6e-82 Score=704.24 Aligned_cols=439 Identities=48% Similarity=0.765 Sum_probs=355.9
Q ss_pred hhHHHHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHH
Q 005131 262 ENILKVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVA 341 (713)
Q Consensus 262 ~~l~~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~ 341 (713)
..+.++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+..+.++++
T Consensus 9 ~~~~~P~tg~~~~~~~~~~--------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g 80 (463)
T 2h5g_A 9 SGVDLGTENLYFQSMVKPA--------GPTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLE 80 (463)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCEEEEecCCC--------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 3456788999999887775 88999999999999999999999999999999999999999999999999986
Q ss_pred HHHHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecCCchHHHHHH
Q 005131 342 AAEQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFESRPDALVQIA 420 (713)
Q Consensus 342 ~~~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~~P~~~~~~~ 420 (713)
..+ .++.+.+.+++.....|+..+++.+++++. ..+..+...+......+...++.++|+|||++|+||+|..+++++
T Consensus 81 ~~~-~~~Gk~~~~rl~~a~~ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~nP~n~p~~~ 159 (463)
T 2h5g_A 81 EAE-GRLAAPLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVA 159 (463)
T ss_dssp HHT-TTSCHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTSTTCEEEEEEEETTEEEEEEEEECCEEEEEESSCTTHHHHHH
T ss_pred ccc-ccCCCchhhhhhhhHHHHHHHHHHHHHHHHhhHhhcCcccccccCCCCceeEEEEEcCceEEEEecCCcHHHHHHH
Confidence 433 111122233333445799999999999996 556555543221112455678899999999999988888888999
Q ss_pred HHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccc-cCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHHh
Q 005131 421 ALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPE-NVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKES 499 (713)
Q Consensus 421 ~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~-glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 499 (713)
+|||++||+||+|||+.+|+++.++++++.++|++ | |+|+||+|+|+.++++.|..||+||+|+||||+.+|+.|++.
T Consensus 160 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~G-P~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~ 238 (463)
T 2h5g_A 160 ALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHG-VKEAVQLVNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKA 238 (463)
T ss_dssp HHHHHHTCEEEEECCGGGHHHHHHHHHHHHHHHHTTT-CGGGEEECCTTCCC-------CCCSEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCCcHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHh
Confidence 99999999999999999999999999999999875 7 999999999876788999999999999999999999999998
Q ss_pred cC-CCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCch-hHHHHHHHHHHhCCCEEEcCCc
Q 005131 500 TK-IPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVP-TGFNELIDNLRSEGVTLYGGPR 576 (713)
Q Consensus 500 ~~-~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d-~fi~~l~~~~~~~Ga~l~gg~~ 576 (713)
+. ||+++|||||||+||++|||++.| ..+++++|+| ||.|+|++|||||+++|| .+++++++.++++|+++.||..
T Consensus 239 aal~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~f~n-GQ~C~a~~rvlV~~~i~d~p~~~~~i~~~~~~Ga~v~~G~~ 317 (463)
T 2h5g_A 239 AKGIPVMGHSEGICHMYVDSEASVDKVTRLVRDSKCEY-PAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPK 317 (463)
T ss_dssp CSSSCBCSCSCCCEEEEECTTCCTTTHHHHHHHHHHSC-TTSTTSEEEEEEEGGGTTSHHHHHHHHHHHHTTCEEEECHH
T ss_pred cCCCCEEEecCCcceEEEcCCCCHHHHHHHHHHHhccC-CCccccCcEEEEeccccchHHHHHHHHHHHhCCCEEEeCCc
Confidence 75 999999999999999999999999 5566777777 999999999999999998 4889999999999999966643
Q ss_pred c-ccccCC-CCCCCccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCC
Q 005131 577 A-SSLLNI-PEPNSFHHEYNSMACTIEIVDDVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCD 654 (713)
Q Consensus 577 ~-~~~~~v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~ 654 (713)
. ...+.+ ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.+++.++++++++|+||||+++...+
T Consensus 318 ~~~~g~~~~~~~~i~~eE~FgPvl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~ 397 (463)
T 2h5g_A 318 FASYLTFSPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSD 397 (463)
T ss_dssp HHC---------CCSSCCCCSSEEEEEEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCS
T ss_pred ccccCccCCCCchHHhccccCceEEEEEeCCHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHhCCeeEEEEeCCccCCC
Confidence 2 111124 78999999999999999999999999999999999999999999999999999999999999999876778
Q ss_pred CCCccCccceeeccccCCCcccchHhhceeEEEEEECCCeeec---CCCCcccccccccC
Q 005131 655 GARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSGQVVD---GDKGVEYIHEDVNI 711 (713)
Q Consensus 655 ~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~~~~~~~---~~~~~~~~~~~~~~ 711 (713)
.+||||+|+||+|++++|++|++|+++||++|+|+++.+++|+ ..+...|+|+.+++
T Consensus 398 ~~PfGG~k~SG~G~~r~~~~G~~gl~~ft~~K~v~~~~~~~r~~y~~~~~~~~~~~~~~~ 457 (463)
T 2h5g_A 398 GYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLPI 457 (463)
T ss_dssp TTTTTSSCCSCEECCSSSCCEECCGGGGEEEEEEEECSSCCGGGGSTTSSCCCCCEECCC
T ss_pred CCCCCCCccCcCCCCcccCCCHHHHHHhceeEEEEECCCcccCCccccchhhcccccCcc
Confidence 9999999999999655666899999999999999999999995 46778999987654
No 4
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=100.00 E-value=2.9e-82 Score=710.30 Aligned_cols=401 Identities=18% Similarity=0.192 Sum_probs=358.1
Q ss_pred HHHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHH
Q 005131 265 LKVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAE 344 (713)
Q Consensus 265 ~~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~ 344 (713)
.++.+|+.++++...+ .+|+++|+++|++||+.|+++++++|.++|++++++|++++++|+..+.+++|++.
T Consensus 53 ~nP~tg~~i~~v~~~~--------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 124 (504)
T 3ek1_A 53 TNPADGSVIGTVPSLS--------VATIKEAIDASAKALSGWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPL 124 (504)
T ss_dssp ECTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3467899999887765 99999999999999999999999999999999999999999999987777777665
Q ss_pred HhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHH
Q 005131 345 QEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAA 421 (713)
Q Consensus 345 ~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~ 421 (713)
.++ ..|+..+++.+++++. ..+..+...+.. ..+...++.++|+|||++|+|| ||+.+. ++++
T Consensus 125 ~ea------------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a 190 (504)
T 3ek1_A 125 AEA------------RGEVLYAASFIEWFAEEAKRVYGDTIPAP--QNGQRLTVIRQPVGVTAAITPWNFPAAMITRKAA 190 (504)
T ss_dssp HHH------------HHHHHHHHHHHHHHHHHHTTCCEEEECCS--STTEEEEEEEEECCEEEEECCSSSTTHHHHHHHH
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHhcCcccccc--cccccceeeccCceEEEEECCCcchHHHHHHHHH
Confidence 442 1688899999999987 334334333221 2356788999999999999999 999985 9999
Q ss_pred HHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHhc
Q 005131 422 LAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST 500 (713)
Q Consensus 422 ~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~ 500 (713)
|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 191 ~ALaaGN~VVlKPs~~tp~t~~~l~~l~~ea---GlP~gv~~vv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~a 267 (504)
T 3ek1_A 191 PALAAGCTMIVRPADLTPLTALALGVLAEKA---GIPAGVLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLMAQC 267 (504)
T ss_dssp HHHHHTCEEEEECCTTSCHHHHHHHHHHHHT---TCCTTTEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCCcChHHHHHHHHHHHHh---CCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhh
Confidence 9999999999999999999999999999999 999999999997 467899999999999999999999999999875
Q ss_pred ---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHH----------------
Q 005131 501 ---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNEL---------------- 560 (713)
Q Consensus 501 ---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l---------------- 560 (713)
.||+++|||||||+||++|||++.| ..+++++|+|+||.|++++|||||+++||+|+++|
T Consensus 268 a~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~ 347 (504)
T 3ek1_A 268 APTIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVYDKFAEKLAAKVKELKVGNGTEPG 347 (504)
T ss_dssp GGGTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEHHHHHHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hhhcCCeEecCCCCCeeEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEehhHHHHHHHHHHHHHhhcccCCCcccc
Confidence 5999999999999999999999999 56777888899999999999999999999999987
Q ss_pred ------------------HHHHHhCCCEE-EcCCc-cccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHHH
Q 005131 561 ------------------IDNLRSEGVTL-YGGPR-ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGHI 613 (713)
Q Consensus 561 ------------------~~~~~~~Ga~l-~gg~~-~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~~ 613 (713)
+++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||||+++
T Consensus 348 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~a 427 (504)
T 3ek1_A 348 VVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELGGLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQA 427 (504)
T ss_dssp CCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEEETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCceECCeEEecCCCcChhhcccccCcEEEEEEeCCHHHHHHHH
Confidence 35567789999 78764 344542 3 789999999999999999999999999999
Q ss_pred HccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEEECCC
Q 005131 614 HQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSG 693 (713)
Q Consensus 614 N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~~~ 693 (713)
|+++|||++||||+|.++++++++++++|+||||++....+.+||||+|+||+|+ ++|++|+++||+.|+|+++.+
T Consensus 428 N~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~~t~~K~v~~~~g 503 (504)
T 3ek1_A 428 NDTIFGLAAYFYTENFSRAIRVSEALEYGMVGHNTGLISNEVAPFGGVKQSGLGR----EGSKYGIEEYLETKYICSAYK 503 (504)
T ss_dssp HCSSCCSEEEEECCBHHHHHHHHHHSCCSEEEESCSCCCCSSSCBCCSGGGEESC----BSTTTSGGGGEEEEEEEEECC
T ss_pred hCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCcCCcCcCcCCC----CCcHHHHHHhhceEEEEEecC
Confidence 9999999999999999999999999999999999987777899999999999999 899999999999999998766
Q ss_pred e
Q 005131 694 Q 694 (713)
Q Consensus 694 ~ 694 (713)
+
T Consensus 504 ~ 504 (504)
T 3ek1_A 504 R 504 (504)
T ss_dssp C
T ss_pred C
Confidence 3
No 5
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=100.00 E-value=1.4e-82 Score=713.16 Aligned_cols=412 Identities=16% Similarity=0.170 Sum_probs=356.6
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+..+.+++|++..
T Consensus 33 ~P~tg~~i~~v~~~~--------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 104 (506)
T 3rh9_A 33 NPATGSVIAKVPSMP--------EEDVVAAVEAGQSALRLTNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPWK 104 (506)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH
Confidence 467899999887775 999999999999999999999999999999999999999999999888888877664
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeee-ccceeEEEEecC-CchHHH-HHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTS-CPLGVLLIVFES-RPDALV-QIAA 421 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~-~P~GVv~~I~p~-~P~~~~-~~~~ 421 (713)
++ ..|+..+++.+++++. ..+..+...+. ..+...++++ +|+|||++|+|| ||+.+. ++++
T Consensus 105 ea------------~~ev~~~~~~l~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a 169 (506)
T 3rh9_A 105 EA------------QGEVDYAAGFFDYCAKHISALDSHTIPE---KPKDCTWTVHYRPVGVTGLIVPWNFPIGMIAKKLS 169 (506)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHGGGGCCEECSC---CGGGCEEEEEEEECCSEEEECCSSSTTHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhcCccccc---CCCceeeEeecccceEEEEECCCchHHHHHHHHHH
Confidence 42 1688899999999987 44444333221 1355678889 999999999999 999985 9999
Q ss_pred HHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHhc
Q 005131 422 LAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST 500 (713)
Q Consensus 422 ~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~ 500 (713)
|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 170 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea---GlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~vG~~i~~~a 246 (506)
T 3rh9_A 170 AALAAGCPSVIKPASETPLTMIAFFSVMDKL---DLPDGMVNLVMGKASVIGKVLCEHKDVPMLSFTGSTEVGRKLIVDT 246 (506)
T ss_dssp HHHHHTCCEEEECCTTSCHHHHHHHHHHTTT---TCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHT
T ss_pred HHHHcCCEEEEEcCCccHHHHHHHHHHHHHh---CcChhhEEEEeCCChHHHHHHHhCCCCCEEEEECCHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999998 467888898899999999999999999999876
Q ss_pred ---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH---------------
Q 005131 501 ---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI--------------- 561 (713)
Q Consensus 501 ---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~--------------- 561 (713)
.||+++|||||||+||++|||++.| ..+++++|+|+||.|+|++|+|||+++||+|+++|+
T Consensus 247 a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~ 326 (506)
T 3rh9_A 247 AEQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVADAFGQKLAERVNKMTVGDGMNDG 326 (506)
T ss_dssp TTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSSSSCCEEEEETTTHHHHHHHHHHHHHHCCBSCTTSTT
T ss_pred hhcCCceEEecCCCCceEECCCCCHHHHHHHHHHHHHHhCCCCcccCcEEEEcHHHHHHHHHHHHHHHHhccCCCCcccC
Confidence 5999999999999999999999999 567778888999999999999999999999999873
Q ss_pred -------------------HHHHhCCCEE-EcCCc----cccccC------C-CCCCCccccccCceEEEEEeCCHHHHH
Q 005131 562 -------------------DNLRSEGVTL-YGGPR----ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAI 610 (713)
Q Consensus 562 -------------------~~~~~~Ga~l-~gg~~----~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi 610 (713)
++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||||
T Consensus 327 ~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 406 (506)
T 3rh9_A 327 IDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEEVI 406 (506)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHTTCEEEESCCGGGCCSSSCCCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHHH
T ss_pred CcccccCCHHHHHHHHHHHHHHHHCCCEEEecCCcCCCCCCcEECCeEEccCCCCChhhcccccCcEEEEEEeCCHHHHH
Confidence 5567789998 88864 345542 3 789999999999999999999999999
Q ss_pred HHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEEE
Q 005131 611 GHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILK 690 (713)
Q Consensus 611 ~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~ 690 (713)
+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||+|+||+|+ ++|++|+++||+.|+|++
T Consensus 407 ~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G~----~~G~~gl~~ft~~K~v~~ 482 (506)
T 3rh9_A 407 DAGNDTEFGLASYVFTADAERAQRVAAGLRFGHVGWNTGTGPTPEAPFGGMKASGIGR----EGGLEGLFEFVEAQTVPR 482 (506)
T ss_dssp HHHTCSSCCSEEEEECSCHHHHHHHHHHCCCSEEEESCCCCCCTTSCBCCSGGGEESC----BSHHHHHTTTEEEEEEEE
T ss_pred HHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCccCcCcCcCCc----CccHHHHHHhcceEEEEE
Confidence 9999999999999999999999999999999999999998778899999999999998 899999999999999999
Q ss_pred CCCee---ecCCCCcccccc
Q 005131 691 GSGQV---VDGDKGVEYIHE 707 (713)
Q Consensus 691 ~~~~~---~~~~~~~~~~~~ 707 (713)
+.++. +++--+-||-|-
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~ 502 (506)
T 3rh9_A 483 GFAENLYFQSHHHHHHWSHP 502 (506)
T ss_dssp C-------------------
T ss_pred cCccceeecccccccccCcc
Confidence 87653 355556667654
No 6
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=100.00 E-value=2.9e-82 Score=711.19 Aligned_cols=415 Identities=22% Similarity=0.239 Sum_probs=357.2
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+..+.+++|++..
T Consensus 33 nP~tg~~i~~~~~~~--------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 104 (505)
T 3prl_A 33 APASGVALGSIPALS--------QEEVNDAIQGAKDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKK 104 (505)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHH
T ss_pred CCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 467899999887764 999999999999999999999999999999999999999999999888888877765
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccC---CceeeeeeccceeEEEEecC-CchHHH-HH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLAD---GLFLEKTSCPLGVLLIVFES-RPDALV-QI 419 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~---~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~ 419 (713)
++ ..|+..+++.+++++. ..+..+...+....+. +...++.++|+|||++|+|| ||+.+. ++
T Consensus 105 ea------------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~ 172 (505)
T 3prl_A 105 SA------------IGEVSRTADIIRHTADEALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAK 172 (505)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHHHTCCEEEEEGGGSTTTCSSEEEEEEEEECSEEEEEECSSSTTHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhcCccccccccccccCCceeEEEEcCCcEEEEECCCccHHHHHHHH
Confidence 42 2588899999999987 4444443332211111 45678899999999999999 999985 99
Q ss_pred HHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHH
Q 005131 420 AALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKE 498 (713)
Q Consensus 420 ~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 498 (713)
++|||++||+||+|||+.+|+++..|++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++
T Consensus 173 ~a~ALaaGN~VVlKpse~tp~ta~~l~~ll~ea---GlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 249 (505)
T 3prl_A 173 IAPALVTGNTVVFKPATQGSLSGIKMVEALADA---GAPEGIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERISE 249 (505)
T ss_dssp HHHHHHTTCEEEEEECSTTHHHHHHHHHHHHHT---TCCTTSEEECCCCHHHHHHHHHTCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCCEEEEECCCCChHHHHHHHHHHHHh---CcCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH
Confidence 999999999999999999999999999999999 899999999998 4788999999999999999999999999999
Q ss_pred hcC-CCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH---------------
Q 005131 499 STK-IPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI--------------- 561 (713)
Q Consensus 499 ~~~-~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~--------------- 561 (713)
.+. ||+++|||||||+||++|||++.| ..+++++|+|+||.|+|++|+|||+++||+|+++|+
T Consensus 250 ~aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~ 329 (505)
T 3prl_A 250 KAKMIPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDSVADQLVANIKELVEQLTVGSPEDDA 329 (505)
T ss_dssp HCCSSCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHHHHHHHHHHHHHHHCCBSCTTTTC
T ss_pred HccCCcEEEECCCCCCCccCCCCCHHHHHHHHHHHHHhcCCCccccCceEEEeHHHHHHHHHHHHHHHHhcccCCCCCcC
Confidence 874 999999999999999999999999 567778888999999999999999999999998773
Q ss_pred ------------------HHHHhCCCEE-EcCCccccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHHHHc
Q 005131 562 ------------------DNLRSEGVTL-YGGPRASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGHIHQ 615 (713)
Q Consensus 562 ------------------~~~~~~Ga~l-~gg~~~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~~N~ 615 (713)
++++++|+++ +||...+.|+. + ++|++++||+||||++|++|+|+||||+++|+
T Consensus 330 ~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~~~deAi~~aN~ 409 (505)
T 3prl_A 330 DITPVIDEKSAAFIQGLIDDALENGATLLSGNKRQGNLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLSNQ 409 (505)
T ss_dssp SBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHHHHHT
T ss_pred cCCcccCHHHHHHHHHHHHHHHHCCCEEEecCCCCCceeCCeEeecCCCCChhhcCCccCcEEEEEEeCCHHHHHHHHhC
Confidence 4566789999 88876565652 4 78999999999999999999999999999999
Q ss_pred cCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCC-CCCCCCccCccceeeccccCCCcccchHhhceeEEEEEECCCe
Q 005131 616 HGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTR-FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSGQ 694 (713)
Q Consensus 616 ~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~-~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~~~~ 694 (713)
++|||++||||+|.+++.++++++++|+|+||+++. ..+.+||||+|+||+|+ ++|++|+++||+.|+|+++.+.
T Consensus 410 ~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~PFGG~k~SG~Gr----~~g~~~~~~f~~~k~v~~~~~~ 485 (505)
T 3prl_A 410 SDYGLQASIFTKDTDRAINIGKHLEVGTVHINAKTERGPDHFPFLGVKKSGLGV----QGIKPSLLSMTRERVTVLNLAE 485 (505)
T ss_dssp SSEESEEEEECSCHHHHHHHHHTSCSSEEEESSCCCSCSTTSCBCCEETTEESC----BSHHHHHHHTEEEEEEEEEC--
T ss_pred CCCCeEEEEEcCCHHHHHHHHHHCCeeEEEEcCCCCCCCCCCCcCCcCcCCCCc----CccHHHHHHhhceEEEEEeCCC
Confidence 999999999999999999999999999999999865 56889999999999999 8999999999999999886532
Q ss_pred ---eecCCCCcccccc
Q 005131 695 ---VVDGDKGVEYIHE 707 (713)
Q Consensus 695 ---~~~~~~~~~~~~~ 707 (713)
++++--+-||-|-
T Consensus 486 ~~~~~~~~~~~~~~~~ 501 (505)
T 3prl_A 486 NLYFQSHHHHHHWSHP 501 (505)
T ss_dssp ----------------
T ss_pred cccCCccccccccCcc
Confidence 3345555666653
No 7
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=6.8e-82 Score=709.34 Aligned_cols=398 Identities=16% Similarity=0.182 Sum_probs=356.0
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.||+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+..+.+++|++..
T Consensus 36 nP~tg~~i~~~~~~~--------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 107 (517)
T 3r31_A 36 FPATGEMIAKLHAAT--------PAIVERAIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQ 107 (517)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEECCCC--------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 467899999887775 999999999999999999999999999999999999999999999999999888775
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccC----ccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-H
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MED----PIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-Q 418 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~----~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~ 418 (713)
+ .|+..+++.+++++. ... ..+...+. ..+. .+++++|+|||++|+|| ||+.+. +
T Consensus 108 e--------------aev~~~~~~~~~~a~~~~~~~~~~~g~~~~~---~~~~-~~~~~~P~GVV~~I~PwN~P~~~~~~ 169 (517)
T 3r31_A 108 E--------------TIVADPTSGADAFEFFGGIAPSALNGDYIPL---GGDF-AYTKRVPLGVCVGIGAWNYPQQIACW 169 (517)
T ss_dssp H--------------HHHHSHHHHHHHHHHHHHHHHHHTCCCEEEC---SSSE-EEEEEEECSEEEEECCSSSHHHHHHH
T ss_pred H--------------HHHHHHHHHHHHHHHHhhhccccccCccccc---CCCc-ceEEEcCccEEEEECCCcchHHHHHH
Confidence 4 377888888888887 333 33333221 2355 88999999999999999 999985 9
Q ss_pred HHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHH
Q 005131 419 IAALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKE 498 (713)
Q Consensus 419 ~~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 498 (713)
+++|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+|+.++++.|..||+||+|+||||+++|+.|++
T Consensus 170 ~~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~ea---GlP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 246 (517)
T 3r31_A 170 KAAPALVAGNAMVFKPSENTPLGALKIAEILIEA---GLPKGLFNVIQGDRDTGPLLVNHPDVAKVSLTGSVPTGRKVAA 246 (517)
T ss_dssp HHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHT---TCCTTSEEECCCCTTHHHHHHTCTTEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEEcCcccHHHHHHHHHHHHHh---CcCcccEEEEECCHHHHHHHHhCCCcCEEeccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999997778999999999999999999999999998
Q ss_pred hc---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH-------------
Q 005131 499 ST---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI------------- 561 (713)
Q Consensus 499 ~~---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~------------- 561 (713)
.+ .||+++|||||||+||++|||++.| ..+++++|+|+||.|+|++|||||+++||+|+++|+
T Consensus 247 ~aa~~lk~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~ 326 (517)
T 3r31_A 247 AAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAKARFLENLKRRTEAMILGDPLD 326 (517)
T ss_dssp HHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHTSCCHHHHTTCEEEEEEGGGHHHHHHHHHHHHHHCCBCCTTS
T ss_pred HhhcCCCcEEEEcCCcCeEEEecCCCHHHHHHHHHHHHhcCCCceeccCceEEEeHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 75 6999999999999999999999999 567778888999999999999999999999999873
Q ss_pred ---------------------HHHHhCCCEE-EcCC-c-----cccccC------C-CCCCCccccccCceEEEEEeCCH
Q 005131 562 ---------------------DNLRSEGVTL-YGGP-R-----ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDV 606 (713)
Q Consensus 562 ---------------------~~~~~~Ga~l-~gg~-~-----~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~ 606 (713)
++++++|+++ +||. . .+.|+. + ++|++++||+||||++|++|+|+
T Consensus 327 ~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 406 (517)
T 3r31_A 327 YATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDDE 406 (517)
T ss_dssp TTCSBCCBSCHHHHHHHHHHHHHHHHHTCEEEECCSCCSSCCSSSBCCCCEEEEEECTTSHHHHSCCSSSEEEEEEECCH
T ss_pred cCCcccCCcCHHHHHHHHHHHHHHHhCCCEEEECCccCcccCCCCceECCEEEecCCCCCccccceeeccEEEEEEeCCH
Confidence 4566789998 8883 1 244542 3 78999999999999999999999
Q ss_pred HHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEE
Q 005131 607 HAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 686 (713)
Q Consensus 607 ~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k 686 (713)
||||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||+|+||+|+ ++|++|+++||+.|
T Consensus 407 deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~ft~~K 482 (517)
T 3r31_A 407 DEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGFGR----ENSAAALEHYSELK 482 (517)
T ss_dssp HHHHHHHHCSSEESEEEEECSCHHHHHHHHHHSCCSEEEESSCCCCCTTSCBCCEETTEECC----BSTGGGGGGSEEEE
T ss_pred HHHHHHHhCCCCCeeEEEEeCCHHHHHHHHHHCCcceEEECCCCCCCCCCCcCCcCcCCCCc----CchHHHHHHhhceE
Confidence 99999999999999999999999999999999999999999988788999999999999999 89999999999999
Q ss_pred EEEECCCeee
Q 005131 687 WILKGSGQVV 696 (713)
Q Consensus 687 ~v~~~~~~~~ 696 (713)
+|+++.++++
T Consensus 483 ~v~~~~~~~~ 492 (517)
T 3r31_A 483 TVYVSTGKVD 492 (517)
T ss_dssp EEEECCC---
T ss_pred EEEEcCCCCC
Confidence 9999887755
No 8
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=100.00 E-value=8.2e-82 Score=703.97 Aligned_cols=397 Identities=17% Similarity=0.162 Sum_probs=351.3
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.||+.++++... +.+|+++|+++|++||+.|+++++++|.++|++++++|++++++|+..+.+++|++..
T Consensus 10 nP~tg~~i~~~~~~--------~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 81 (484)
T 3ros_A 10 NPYTNEAFASYDNP--------TSKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLS 81 (484)
T ss_dssp ETTTTEEEEECCCC--------CHHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEECCC--------CHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH
Confidence 36688888876665 4999999999999999999999999999999999999999999999888777777654
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
++ ..|+..+++.+++++. ..+..+...+. ..+...+++++|+|||++|+|| ||+.+. ++++|
T Consensus 82 ea------------~~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ 146 (484)
T 3ros_A 82 ES------------KEEVELCVSICNYYADHGPEMLKPTKLN---SDLGNAYYLKQSTGVIMACEPWNFPLYQVIRVFAP 146 (484)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHHHHHTSCEEEC---CTTSEEEEEEECCCEEEEECCSSSTTHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhcCCeecc---CCCceeEEEecCCceEEEECCCchHHHHHHHHHHH
Confidence 42 1577788888888876 33333322221 1356788999999999999999 999985 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCC-chhHHhhhcCCCccEEEecCCHHHHHHHHHhc-
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~- 500 (713)
||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+|. +++++ |..||+||+|+||||+++|+.|++.+
T Consensus 147 ALaaGN~VVlKps~~tp~t~~~l~~l~~~a---GlP~gvv~vv~g~~~~~~~-L~~~p~vd~I~fTGS~~~G~~i~~~aa 222 (484)
T 3ros_A 147 NFIVGNPILLKHAHNVPGSAALTAKIIKRA---GAPEGSLINLYPSYDQLAD-IIADPRIQGVALTGSERGGSAVAEAAG 222 (484)
T ss_dssp HHHHTCCEEEECCTTCHHHHHHHHHHHHHH---TCCTTSEEEECCCHHHHHH-HHTSTTEEEEEEESCHHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCCCChHHHHHHHHHHHHh---CcCcCeEEEEeCChHHHHH-HHhCCCcCEEEEECCHHHHHHHHHHHh
Confidence 999999999999999999999999999999 9999999999985 66788 88899999999999999999999875
Q ss_pred --CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH----------------
Q 005131 501 --KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI---------------- 561 (713)
Q Consensus 501 --~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~---------------- 561 (713)
.||+++|||||||+||++|||++.| ..+++++++|+||.|+|++|||||+++||+|+++|+
T Consensus 223 ~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~ 302 (484)
T 3ros_A 223 KNLKKSTMELGGNDAFIVLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRYDEVLHELKNVFSNLKAGDPLEADT 302 (484)
T ss_dssp HTTCEEEEECCCCCEEEECTTCCHHHHHHHHTTTTTGGGGCCTTSCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred ccCCceEeecCCCCcceeCCCCCHHHHHHHHHHHHhcCCCCCccCCceEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCC
Confidence 5999999999999999999999999 456667788999999999999999999999999873
Q ss_pred ------------------HHHHhCCCEE-EcCCc---cccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHH
Q 005131 562 ------------------DNLRSEGVTL-YGGPR---ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGH 612 (713)
Q Consensus 562 ------------------~~~~~~Ga~l-~gg~~---~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~ 612 (713)
++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||||++
T Consensus 303 ~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 382 (484)
T 3ros_A 303 TLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDNAAIQL 382 (484)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTTCEEEEECCCCCCSSCCCCCEEEECCCTTSTTTTSCCCSSEEEEEEESSHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCcCCCCCceeCCeEeecCCCCCcccccccccceEEEEEcCCHHHHHHH
Confidence 5567789998 78763 344542 4 78999999999999999999999999999
Q ss_pred HHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEEECC
Q 005131 613 IHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGS 692 (713)
Q Consensus 613 ~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~~ 692 (713)
+|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||+|+||+|+ ++|++|+++||+.|+|+++.
T Consensus 383 aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~ft~~K~v~~~~ 458 (484)
T 3ros_A 383 ANDSSYGLGSSVIGSDIDRAKKVSAQIETGMTVINGRWITSGELPFGGIKKSGYGR----ELSGLGLMAFVNEHLVIDVT 458 (484)
T ss_dssp HHSSSCCSCEEEECSCHHHHHHHHHHSCSSCCEETSCCCCCTTSCBCCSGGGEESC----BSHHHHHTTTCEEEEEEECG
T ss_pred HhCCCCCcEEEEECCCHHHHHHHHHhCccceEEECCCCCCCCCCCcCCcCcccCCc----CchHHHHHHhheeEEEEECC
Confidence 99999999999999999999999999999999999988788999999999999999 99999999999999999865
Q ss_pred C
Q 005131 693 G 693 (713)
Q Consensus 693 ~ 693 (713)
.
T Consensus 459 ~ 459 (484)
T 3ros_A 459 K 459 (484)
T ss_dssp G
T ss_pred C
Confidence 3
No 9
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=100.00 E-value=1.4e-81 Score=704.39 Aligned_cols=399 Identities=14% Similarity=0.156 Sum_probs=355.0
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++|+++|++||+.|+++++++|.++|++++++|++++++|+..+.+++|++..
T Consensus 46 nP~tg~~i~~v~~~~--------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 117 (498)
T 4f3x_A 46 NPRTGAGIIDLAEAS--------HAQIDAAVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPIN 117 (498)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH
Confidence 467899999887775 999999999999999999999999999999999999999999999877777776654
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
+++ ..|+..+++.+++++. ..+..+...+.. ..+...+++++|+|||++|+|| ||+.++ ++++|
T Consensus 118 ea~-----------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 184 (498)
T 4f3x_A 118 AVK-----------NDELPAIIDCWRFFAGAVRNLHAPAAGEY--LPGHTSMIRRDPIGIVGSIAPWNYPLMMMAWKLAP 184 (498)
T ss_dssp HHH-----------HTHHHHHHHHHHHHHHHTTCCEEECBEEE--ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHH
T ss_pred HHh-----------HHHHHHHHHHHHHHHHHHHHhcCccccCC--cccccceEEEcCcceEEEECCCchHHHHHHHHHHH
Confidence 310 1588899999999987 444433333211 2466788999999999999999 999985 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHhc-
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~- 500 (713)
||++||+||+|||+.+|+++.++++++.++ +|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 185 ALaaGNtVVlKPs~~tp~t~~~l~~l~~ea----lP~gv~nvv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa 260 (498)
T 4f3x_A 185 AIGGGNTVVFKPSEQTPLTALKLARLIADI----LPEGVVNVITGRGETVGNALINHPKVGMVSITGDIATGKKVLAAAA 260 (498)
T ss_dssp HHHTTCEEEEECCTTCCHHHHHHHHHHHTT----SCTTSEEECCCCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHcCCeEEEECCcccHHHHHHHHHHHHHh----CCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHH
Confidence 999999999999999999999999999998 77779999998 567899999999999999999999999999865
Q ss_pred --CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHH-----------------
Q 005131 501 --KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNEL----------------- 560 (713)
Q Consensus 501 --~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l----------------- 560 (713)
.||+++|||||||+||++|||++.| ..+++++|+|+||.|++++|+|||+++||+|+++|
T Consensus 261 ~~~k~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~vG~p~d~~~ 340 (498)
T 4f3x_A 261 KTVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIYEKLVADLTSAVSTIRYNLDDDTEN 340 (498)
T ss_dssp TTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCEEEEEEETTTHHHHHHHHHHHHTTCCCSCSSGGGC
T ss_pred hhCCceeecCCCCCcEEECCCCCHHHHHHHHHHHHHhcCCCCccCCceEEecHHHHHHHHHHHHHHHHhcccCCCccccC
Confidence 5999999999999999999999999 56777888899999999999999999999999987
Q ss_pred -----------------HHHHHhCCC-EE-EcCCc---cccccC------C-CCCCCccccccCceEEEEEeCCHHHHHH
Q 005131 561 -----------------IDNLRSEGV-TL-YGGPR---ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIG 611 (713)
Q Consensus 561 -----------------~~~~~~~Ga-~l-~gg~~---~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~ 611 (713)
+++++++|+ ++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||||+
T Consensus 341 ~~Gpli~~~~~~~v~~~i~~a~~~Ga~~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 420 (498)
T 4f3x_A 341 EIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAVA 420 (498)
T ss_dssp SSCCCSCHHHHHHHHHHHHHHHHSTTCEEEECCSBCCSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECTTSCHHH
T ss_pred ccccCcCHHHHHHHHHHHHHHHHCCCCEEEECCccCCCCCcEECCEEeecCCCCChhhCCceeCcEEEEEEeCCHHHHHH
Confidence 356678899 88 88864 244542 3 6899999999999999999999999999
Q ss_pred HHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEEEC
Q 005131 612 HIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKG 691 (713)
Q Consensus 612 ~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~ 691 (713)
++|+++|||++||||+|.+++.++++++++|+||||+++...+.+||||+|+||+|+ ++|++|+++||+.|+|+++
T Consensus 421 ~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr----~~G~~~l~~~t~~k~v~~~ 496 (498)
T 4f3x_A 421 WANDSDYGLASSVWTKDISKAMRAASRLQYGCTWINTHFMLTNEMPHGGIKQSGYGK----DMSVYALEDYTAVRHIMIN 496 (498)
T ss_dssp HHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCCTTSCBCCSGGGEECC----BSHHHHHHHTEEEEEEEEE
T ss_pred HHhcCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcCCcCc----cchHHHHHHhhceEEEEEe
Confidence 999999999999999999999999999999999999987777999999999999999 8999999999999999986
Q ss_pred CC
Q 005131 692 SG 693 (713)
Q Consensus 692 ~~ 693 (713)
.|
T Consensus 497 ~g 498 (498)
T 4f3x_A 497 HG 498 (498)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 10
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=100.00 E-value=1.1e-81 Score=708.03 Aligned_cols=400 Identities=19% Similarity=0.222 Sum_probs=358.2
Q ss_pred HHHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHH
Q 005131 265 LKVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESS--RRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAA 342 (713)
Q Consensus 265 ~~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~--~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~ 342 (713)
.++.+|+.++++...+ .+|+++|+++|++|| +.|++++.++|.++|++++++|++++++|+..+.+++|+
T Consensus 53 ~nP~tg~~i~~v~~~~--------~~dv~~Av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 124 (520)
T 3ed6_A 53 INPYNQEVIFTVSEGT--------KEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGK 124 (520)
T ss_dssp EETTTTEEEEEEECCC--------HHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCC
T ss_pred ECCCCCCEEEEEcCCC--------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 4577888888887664 999999999999999 899999999999999999999999999999877777776
Q ss_pred HHHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HH
Q 005131 343 AEQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QI 419 (713)
Q Consensus 343 ~~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~ 419 (713)
+..++ ..|+..+++.+++++. ..+..+...+.. ..+...+++++|+|||++|+|| ||+.++ ++
T Consensus 125 ~~~ea------------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~ 190 (520)
T 3ed6_A 125 TLEES------------YADMDDIHNVFMYFAGLADKDGGEMIDSP--IPDTESKIVKEPVGVVTQITPWNYPLLQASWK 190 (520)
T ss_dssp CHHHH------------HHHHHHHHHHHHHHHHHTTSCCEEEECCS--STTEEEEEEEEECCEEEEECCSSSHHHHHHHH
T ss_pred CHHHH------------HHHHHHHHHHHHHHHHHHHHhcCeecccC--CCCCcccccccCccEEEEECCCccHHHHHHHH
Confidence 65442 1589999999999998 444444333221 1356788999999999999999 999985 99
Q ss_pred HHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHH
Q 005131 420 AALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKE 498 (713)
Q Consensus 420 ~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 498 (713)
++|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++
T Consensus 191 ~apALaaGNtVVlKPs~~tp~t~~~l~~l~~ea---GlP~gvvnvv~g~~~~~g~~L~~~p~vd~V~FTGS~~vG~~i~~ 267 (520)
T 3ed6_A 191 IAPALATGCSLVMKPSEITPLTTIRVFELMEEV---GFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKHIMK 267 (520)
T ss_dssp HHHHHHHTCEEEEECCTTCCHHHHHHHHHHHHH---CCCTTSEEECCSCCTTHHHHHHHCTTCSEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEcCCcchHHHHHHHHHHHHh---CCCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999998 5788999999999999999999999999998
Q ss_pred hc---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHH--------------
Q 005131 499 ST---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNEL-------------- 560 (713)
Q Consensus 499 ~~---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l-------------- 560 (713)
.+ .||+++|||||||+||++|||++.| ..+++++|+|+||.|+|++|||||+++||+|+++|
T Consensus 268 ~aa~~l~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~l~vG~p~d 347 (520)
T 3ed6_A 268 NAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIKDKFEQALIDRVKKIKLGNGFD 347 (520)
T ss_dssp HHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGTSTTCCCEEEEEHHHHHHHHHHHHHHHTTCCBCCTTS
T ss_pred HhhhcCCCEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhcCCCCcccCceEEEcHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 75 5999999999999999999999999 56777888899999999999999999999999987
Q ss_pred --------------------HHHHHhCCCEE-EcCCcc-------ccccC------C-CCCCCccccccCceEEEEEeCC
Q 005131 561 --------------------IDNLRSEGVTL-YGGPRA-------SSLLN------I-PEPNSFHHEYNSMACTIEIVDD 605 (713)
Q Consensus 561 --------------------~~~~~~~Ga~l-~gg~~~-------~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~ 605 (713)
+++++++|+++ +||... +.|+. + ++|++++||+||||++|++|+|
T Consensus 348 ~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~f~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 427 (520)
T 3ed6_A 348 ADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFET 427 (520)
T ss_dssp TTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCCCGGGTTTTCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESS
T ss_pred CCCcccccCCHHHHHHHHHHHHHHHhCCCEEEeCCCcCccccCCCCceECCeEEecCCCCCccccCceeCcEEEEEEeCC
Confidence 35667789998 888642 34542 3 7899999999999999999999
Q ss_pred HHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeE
Q 005131 606 VHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 685 (713)
Q Consensus 606 ~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~ 685 (713)
+||||+++|+++|||++||||+|.+++.++++++++|+||||++....+.+||||+|+||+|+ ++|++|+++||+.
T Consensus 428 ~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~Gr----e~G~~gl~~~t~~ 503 (520)
T 3ed6_A 428 EQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGR----ELGKEGLEEYLVS 503 (520)
T ss_dssp HHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESCSCCCCTTSCBCCSGGGEESC----BSHHHHHHTTEEE
T ss_pred HHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHHCCcceEEECCCCCCCCCCCcCCcCcCcCCc----cchHHHHHHhhce
Confidence 999999999999999999999999999999999999999999987667899999999999999 9999999999999
Q ss_pred EEEEECCC
Q 005131 686 RWILKGSG 693 (713)
Q Consensus 686 k~v~~~~~ 693 (713)
|+|+++.+
T Consensus 504 k~v~~~~~ 511 (520)
T 3ed6_A 504 KHILTNTN 511 (520)
T ss_dssp EEEEEESS
T ss_pred EEEEEcCC
Confidence 99998765
No 11
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=100.00 E-value=3.9e-81 Score=702.43 Aligned_cols=399 Identities=15% Similarity=0.196 Sum_probs=354.7
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.||+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|+..+.+++|++..
T Consensus 42 nP~tg~~i~~~~~~~--------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 113 (503)
T 1a4s_A 42 EPATGRVLCQMVPCG--------AEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTIT 113 (503)
T ss_dssp CTTTCCEEEEECCCC--------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEEeCCC--------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 466889888877664 999999999999999999999999999999999999999999999887777776654
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
++ ..|+..+++.+++++. ..+..++..+.. .+...++.++|+|||++|+|| ||+.+. ++++|
T Consensus 114 ea------------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~---~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 178 (503)
T 1a4s_A 114 EA------------EYDIDAAWQCIEYYAGLAPTLSGQHIQLP---GGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAP 178 (503)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHGGGCCEEEEECG---GGCEEEEEEEECSEEEEECCSSSHHHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhcCCcccCC---CCceeEEEEecCceEEEECCCcchHHHHHHHHHH
Confidence 41 2689999999999987 444344332221 234678899999999999999 999985 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHHhc--
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST-- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~-- 500 (713)
||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+|..++++.|..||+||+|+||||+++|+.|++.+
T Consensus 179 ALaaGN~VVlKps~~tp~ta~~l~~l~~~a---GlP~gvv~vv~g~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa~ 255 (503)
T 1a4s_A 179 ALACGNAVVFKPSPMTPVTGVILAEIFHEA---GVPVGLVNVVQGGAETGSLLCHHPNVAKVSFTGSVPTGKKVMEMSAK 255 (503)
T ss_dssp HHHTTCEEEEECCTTSCHHHHHHHHHHHHT---TCCTTSEEECCCSHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHHHT
T ss_pred HHHcCCEEEEECCCCChHHHHHHHHHHHHh---CCCcCeEEEEecCchHHHHHHhCCCcCEEEEeCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999 899999999997327899999999999999999999999999875
Q ss_pred -CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH-----------------
Q 005131 501 -KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI----------------- 561 (713)
Q Consensus 501 -~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~----------------- 561 (713)
.||+++|||||||+||++|||++.| ..+++++++|+||.|+|++|+|||+++||+|+++|+
T Consensus 256 ~~~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~ 335 (503)
T 1a4s_A 256 TVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVGDPLLTETR 335 (503)
T ss_dssp TTCEEEEECCCCCEEEECTTSCHHHHHHHHHHTTCGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCC
T ss_pred cCCceEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEehHHHHHHHHHHHHHHHhcCCCCCcccCCc
Confidence 7999999999999999999999999 566777788999999999999999999999999883
Q ss_pred -----------------HHHHhCCCEE-EcCCcc---------ccccC------C-CCCCCccccccCceEEEEEeCCHH
Q 005131 562 -----------------DNLRSEGVTL-YGGPRA---------SSLLN------I-PEPNSFHHEYNSMACTIEIVDDVH 607 (713)
Q Consensus 562 -----------------~~~~~~Ga~l-~gg~~~---------~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~ 607 (713)
++++++|+++ +||... +.|+. + ++|++++||+||||++|++|+|+|
T Consensus 336 ~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 415 (503)
T 1a4s_A 336 MGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEE 415 (503)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSBCCCSSGGGTTSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECCHH
T ss_pred cCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccccccCCceeCCEEEecCCCCCHHHhccccCceEEEEecCCHH
Confidence 3455679998 787642 34442 3 688999999999999999999999
Q ss_pred HHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEE
Q 005131 608 AAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 687 (713)
Q Consensus 608 eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~ 687 (713)
|||+++|+++|||++||||+|.++++++++++++|+||||++....+.+||||+|+||+|+ ++|++|+++|++.|+
T Consensus 416 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G~----~~G~~~l~~f~~~k~ 491 (503)
T 1a4s_A 416 EVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFGR----ENGQATVDYYSQLKT 491 (503)
T ss_dssp HHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESCCCCCCTTSCBCCSGGGEECC----BSTTGGGGGSEEEEE
T ss_pred HHHHHHhcCCCCceEEEECCCHHHHHHHHHHCceeEEEECCCCCCCCCCCCCCcCCCCCCc----cchHHHHHHhcCceE
Confidence 9999999999999999999999999999999999999999987777889999999999998 899999999999999
Q ss_pred EEECCCe
Q 005131 688 ILKGSGQ 694 (713)
Q Consensus 688 v~~~~~~ 694 (713)
|+++.++
T Consensus 492 v~~~~~~ 498 (503)
T 1a4s_A 492 VIVEMGD 498 (503)
T ss_dssp EEECCSC
T ss_pred EEEccCC
Confidence 9997765
No 12
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=100.00 E-value=2.4e-81 Score=703.82 Aligned_cols=399 Identities=16% Similarity=0.202 Sum_probs=356.1
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+..+.+++|++..
T Consensus 34 nP~tg~~i~~~~~~~--------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ 105 (497)
T 3k2w_A 34 SPSTGKVIGEIPAGC--------KADAENALEVAQAAQKAWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLLS 105 (497)
T ss_dssp CSSSCSEEEEEECCC--------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 356889999887775 999999999999999999999999999999999999999999999877777776654
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
++ ..|+..+++.+++++. ..+..+...+.. ..+...++.++|+|||++|+|| ||+.+. ++++|
T Consensus 106 ~a------------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ 171 (497)
T 3k2w_A 106 VA------------EMEVDVTATFIDYGCDNALTIEGDILPSD--NQDEKIYIHKVPRGVVVGITAWNFPLALAGRKIGP 171 (497)
T ss_dssp HH------------HHHHHHHHHHHHHHHHTTTTCCEEEEECS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCcceeEEEcCCceEEEECCCccHHHHHHHHHHH
Confidence 42 1588899999999987 444444433221 2466788999999999999999 999885 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHhc-
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~- 500 (713)
||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 172 ALaaGN~VVlKps~~tp~t~~~l~~ll~~a---GlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~G~~i~~~aa 248 (497)
T 3k2w_A 172 ALITGNTMVLKPTQETPLATTELGRIAKEA---GLPDGVLNVINGTGSVVGQTLCESPITKMITMTGSTVAGKQIYKTSA 248 (497)
T ss_dssp HHHTTCEEEEECCSSSCHHHHHHHHHHHHT---TCCTTSEEECCSCTTTHHHHHHHCSSEEEEEEESCHHHHHHHHHHHT
T ss_pred HHHcCCEEEEECCCCChHHHHHHHHHHHHh---CcCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhh
Confidence 999999999999999999999999999999 999999999998 567889899999999999999999999999876
Q ss_pred --CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH----------------
Q 005131 501 --KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI---------------- 561 (713)
Q Consensus 501 --~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~---------------- 561 (713)
.||+++|||||||+||++|||++.| ..+++++|+|+||.|+|++|||||+++||+|+++|+
T Consensus 249 ~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~vg~p~~~~~ 328 (497)
T 3k2w_A 249 EYMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVCTCVERLYVHASVYDEFMAKFLPLVKGLKVGDPMDADS 328 (497)
T ss_dssp TTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTSEEEEEEETTTHHHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred hcCCCeEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhCCCCCCcCCcEEEEeHHHHHHHHHHHHHHHHhccCCCCCCCCC
Confidence 5999999999999999999999999 567778888999999999999999999999999873
Q ss_pred ------------------HHHHhCCCEE-EcCCc-------cccccC------C-CCCCCccccccCceEEEEEeCCHHH
Q 005131 562 ------------------DNLRSEGVTL-YGGPR-------ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHA 608 (713)
Q Consensus 562 ------------------~~~~~~Ga~l-~gg~~-------~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~e 608 (713)
++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||
T Consensus 329 ~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 408 (497)
T 3k2w_A 329 QMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSMEQ 408 (497)
T ss_dssp SBCCCSCHHHHHHHHHHHHHHHHHHCEEEECCC---------CCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESCHHH
T ss_pred ccccCcCHHHHHHHHHHHHHHHHCCCEEEecCccCCccccCCCceeCCEEEecCCCCcHhhcCCccCcEEEEEEeCCHHH
Confidence 4566779998 78862 244542 3 7899999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEE
Q 005131 609 AIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 688 (713)
Q Consensus 609 Ai~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v 688 (713)
||+++|+++|||++||||+|.++++++++++++|+||||+++...+.+||||+|+||+|+ ++|++|+++||+.|+|
T Consensus 409 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~k~SG~G~----~~G~~gl~~ft~~k~v 484 (497)
T 3k2w_A 409 AIEFCNDSIYGLSAYVHTQSFANINQAISDLEVGEVYINRGMGEQHQGFHNGWKQSGFGG----EDGKFGLEQYLEKKTV 484 (497)
T ss_dssp HHHHHTCSSEESEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCCTTSCBCCEETSEESC----BSHHHHHHTTEEEEEE
T ss_pred HHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEEcCCCCCCCCCCcCCcCCCcCCc----cchHHHHHHhcceEEE
Confidence 999999999999999999999999999999999999999997777999999999999999 8999999999999999
Q ss_pred EECCC
Q 005131 689 LKGSG 693 (713)
Q Consensus 689 ~~~~~ 693 (713)
+++..
T Consensus 485 ~~~~~ 489 (497)
T 3k2w_A 485 YINEA 489 (497)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 98654
No 13
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=100.00 E-value=3.2e-81 Score=705.65 Aligned_cols=402 Identities=19% Similarity=0.202 Sum_probs=358.4
Q ss_pred HHhc-CCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHH
Q 005131 266 KVLQ-GERIGTLFHQDAHILDPFNEVGAREMAVAARESS--RRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAA 342 (713)
Q Consensus 266 ~~~t-ge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~--~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~ 342 (713)
++.+ |+.++++...+ .+|+++|+++|++|| +.|++++.++|.++|++++++|++++++|+..+.+++|+
T Consensus 44 nP~t~g~~i~~~~~~~--------~~dv~~av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 115 (528)
T 3u4j_A 44 SPGHAGEVVGTWPEAS--------ADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEELALIESLEVGK 115 (528)
T ss_dssp CTTSTTCEEEEEECCC--------HHHHHHHHHHHHHHHHTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCC
T ss_pred CCCCCCcEEEEEeCCC--------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3668 89999887775 999999999999999 789999999999999999999999999999887777776
Q ss_pred HHHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HH
Q 005131 343 AEQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QI 419 (713)
Q Consensus 343 ~~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~ 419 (713)
+..++ ..|+..+++.+++++. ..+..++..+.. ..+...+++++|+|||++|+|| ||+.+. ++
T Consensus 116 ~~~ea------------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~ 181 (528)
T 3u4j_A 116 PIAQA------------RGEIGFCADLWSYAAGQARALEGQTHNNI--GDDRLGLVLREPVGVVGIITPWNFPFIIASER 181 (528)
T ss_dssp CHHHH------------HHHHHHHHHHHHHHHHHHTTCCEEEECCS--CTTEEEEEEEEECCEEEEECCSSSHHHHHHHH
T ss_pred CHHHH------------HHHHHHHHHHHHHHHHHHHHhcCeeeccC--CCCceeEEEeccceEEEEECCCccHHHHHHHH
Confidence 65441 2688889999999987 444443333211 1456788999999999999999 999985 99
Q ss_pred HHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHH
Q 005131 420 AALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKE 498 (713)
Q Consensus 420 ~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 498 (713)
++|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++
T Consensus 182 ~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea---GlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 258 (528)
T 3u4j_A 182 VPWAIGSGCTVVLKPSEFTSGTSIRLAELAREA---GIPDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGSVRVGTKLGE 258 (528)
T ss_dssp HHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHH---TCCTTSEEECCCSSTTHHHHHHHCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEcCCccHHHHHHHHHHHHHh---CCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999998 5778999999999999999999999999998
Q ss_pred hc---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH-------------
Q 005131 499 ST---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI------------- 561 (713)
Q Consensus 499 ~~---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~------------- 561 (713)
.+ .||+++|||||||+||++|||++.| ..+++++++|+||.|+|++|||||+++||+|+++|+
T Consensus 259 ~aa~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~ 338 (528)
T 3u4j_A 259 IAARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIRDALMERLLDISRKVAFGDPLN 338 (528)
T ss_dssp HHHTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGHHHHHHHHHHHHHHCCEECTTS
T ss_pred HHHhcCCceEEecCCCCeeEECCCCCHHHHHHHHHHHHhhcCCCCCcCCCEEEEechHHHHHHHHHHHHHHhhcCCCCCC
Confidence 64 5999999999999999999999999 567778888999999999999999999999999873
Q ss_pred ---------------------HHHHhCCCEE-EcCCc----cccccC------C-CCCCCccccccCceEEEEEeCCHHH
Q 005131 562 ---------------------DNLRSEGVTL-YGGPR----ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHA 608 (713)
Q Consensus 562 ---------------------~~~~~~Ga~l-~gg~~----~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~e 608 (713)
++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||
T Consensus 339 ~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 418 (528)
T 3u4j_A 339 ERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTADE 418 (528)
T ss_dssp TTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSEECTTTSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred cCCccCCccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCcEecceEEecCCCCCccccceeeccEEEEEEeCCHHH
Confidence 4567789999 78864 344542 3 7899999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEE
Q 005131 609 AIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 688 (713)
Q Consensus 609 Ai~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v 688 (713)
||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||+|+||+|+ ++|++|+++||+.|+|
T Consensus 419 Ai~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~ft~~K~v 494 (528)
T 3u4j_A 419 AVALANATEFGLSASVWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLGR----ELGRYGFDEYSQFKGV 494 (528)
T ss_dssp HHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEESC----BSTTHHHHHTEEEEEE
T ss_pred HHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCcCCcCcCCCCc----CchHHHHHHhhceEEE
Confidence 999999999999999999999999999999999999999997778899999999999998 8899999999999999
Q ss_pred EECCCeee
Q 005131 689 LKGSGQVV 696 (713)
Q Consensus 689 ~~~~~~~~ 696 (713)
+++.++.+
T Consensus 495 ~~~~~~~~ 502 (528)
T 3u4j_A 495 HVTLGRPA 502 (528)
T ss_dssp EEESSCCC
T ss_pred EEeCCCCC
Confidence 99876433
No 14
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=100.00 E-value=5e-81 Score=697.95 Aligned_cols=413 Identities=17% Similarity=0.221 Sum_probs=354.9
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+....+++|++..
T Consensus 18 nP~tg~~i~~~~~~~--------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 89 (486)
T 3pqa_A 18 NPYSLEVIKKIPALS--------REEAKEAIDTAEKYKEVMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPIK 89 (486)
T ss_dssp CTTTCCEEEEECCCC--------HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 467889888877664 999999999999999999999999999999999999999999999888777777664
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
++ ..|+..+++.+++++. ..+..+...+. .+...++.++|+|||++|+|| ||+.+. ++++|
T Consensus 90 ea------------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 153 (486)
T 3pqa_A 90 QA------------RVEVERSIGTFKLAAFYVKEHRDEVIPS----DDRLIFTRREPVGIVGAITPFNFPLNLSAHKIAP 153 (486)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHHHHCCEEEECC----TTEEEEEEEEECSEEEEEECSSSHHHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhcCceecC----CCceeEEEEccccEEEEECCCchHHHHHHHHHHH
Confidence 42 1578888999999887 44433333221 256788999999999999999 999985 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccc-cCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHhc
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPE-NVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~-glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~ 500 (713)
||++||+||+|||+.+|+++.++++++.+++.+ |+|+|+||+|+| ++++++.|..||+||+|+||||+++|+.|++.+
T Consensus 154 ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GlP~gvv~vv~g~~~~~g~~L~~~p~vd~V~fTGS~~~g~~i~~~a 233 (486)
T 3pqa_A 154 AIATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITKKA 233 (486)
T ss_dssp HHHTTCEEEEEECTTSCHHHHHHHHHHHHHHHHTTCCGGGEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHC
T ss_pred HHHcCCEEEEECCCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHHHHHHHhCCCccEEEEECChHHHHHHHHHc
Confidence 999999999999999999999999999999654 599999999998 467789999999999999999999999999876
Q ss_pred -CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH-----------------
Q 005131 501 -KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI----------------- 561 (713)
Q Consensus 501 -~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~----------------- 561 (713)
.||+++|||||||+||++|||++.| ..+++++++|+||.|+|++|||||+++||+|+++|+
T Consensus 234 a~~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~ 313 (486)
T 3pqa_A 234 GFKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIADKFIEMFVNKAKVLNVGNPLDEKTD 313 (486)
T ss_dssp CSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCS
T ss_pred CCCceeeccCCcCcEEEcCCCCHHHHHHHHHHHHHhcCCCCccCCcEEEEeHHHHHHHHHHHHHHHHhcccCCCCcCCCC
Confidence 7999999999999999999999999 567778888999999999999999999999999873
Q ss_pred -----------------HHHHhCCCEE-EcCCcccccc-----CC-CCCCCccccccCceEEEEEeCCHHHHHHHHHccC
Q 005131 562 -----------------DNLRSEGVTL-YGGPRASSLL-----NI-PEPNSFHHEYNSMACTIEIVDDVHAAIGHIHQHG 617 (713)
Q Consensus 562 -----------------~~~~~~Ga~l-~gg~~~~~~~-----~v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~~N~~~ 617 (713)
++++++|+++ +||...+.|+ ++ ++|++++||+||||++|++|+| ||||+++|+++
T Consensus 314 ~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~g~~~~Ptvl~v~~~~~i~~eEiFGPVl~v~~~~~-deAi~~aN~~~ 392 (486)
T 3pqa_A 314 VGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKRDKALFYPTILEVDRDNILCKTETFAPVIPIIRTNE-EEMIDIANSTE 392 (486)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEECCTTSGGGTCCCCSSEEEEEEECH-HHHHHHHTCSS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCEEEecCCCCCcEeccEEEeCCCCChhhcccccccEEEEEEEcH-HHHHHHHhcCC
Confidence 4567789998 8887655554 34 7899999999999999999999 99999999999
Q ss_pred CCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCC-CCCCCccCccceeeccccCCCcccchHhhceeEEEEEECCCe-e
Q 005131 618 SGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSGQ-V 695 (713)
Q Consensus 618 ~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~~~~-~ 695 (713)
|||++||||+|.++++++++++++|+|+||+++.. .+.+||||+|+||+|+ ++|++|+++||+.|+|+++... +
T Consensus 393 ~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~Gr----~~g~~gl~~f~~~k~v~~~~~~~~ 468 (486)
T 3pqa_A 393 YGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLGR----EGVKYAMEEMSNIKTIIISKAENL 468 (486)
T ss_dssp CCSEEEEECSBHHHHHHHHHHSCSSEEEESSCTTCCCTTSCBCCSGGGEESC----BSHHHHHHHTEEEEEEEEEC----
T ss_pred CCcEEEEECCCHHHHHHHHHhCCcceEEEeCCCCcCCCCCCCCCcCcCcCCC----CCcHHHHHHhhceEEEEEcCCccC
Confidence 99999999999999999999999999999998543 4689999999999999 8999999999999999987533 2
Q ss_pred e--cCCCCcccccc
Q 005131 696 V--DGDKGVEYIHE 707 (713)
Q Consensus 696 ~--~~~~~~~~~~~ 707 (713)
+ ++.-+-||-|-
T Consensus 469 ~~~~~~~~~~~~~~ 482 (486)
T 3pqa_A 469 YFQSHHHHHHWSHP 482 (486)
T ss_dssp --------------
T ss_pred CCCCCCccccccCc
Confidence 2 45566677664
No 15
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=100.00 E-value=1e-80 Score=699.64 Aligned_cols=401 Identities=19% Similarity=0.212 Sum_probs=354.6
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSR-----RLQAMSSEDRKKILLDIADALEANEELIIEENEADV 340 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~ 340 (713)
++.+|+.++++...+ .+|+++|+++|++||+ .|++++.++|.++|++++++|++|+++|+..+.+++
T Consensus 29 nP~tg~~i~~~~~~~--------~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 100 (503)
T 3iwj_A 29 NPATQNIIGDIPAAT--------KEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDC 100 (503)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999887775 9999999999999999 999999999999999999999999999998888887
Q ss_pred HHHHHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCcccccc-ccccccCCceeeeeeccceeEEEEecC-CchHHH
Q 005131 341 AAAEQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHIL-KKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV 417 (713)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~-~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~ 417 (713)
|++..++ ..|+..+++.+++++. ..+..+... +......+...++.++|+|||++|+|| ||+++.
T Consensus 101 Gk~~~ea------------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~ 168 (503)
T 3iwj_A 101 GKPLDEA------------AWDIDDVAGCFEYYADLAEKLDARQKAPVSLPMDTFKSHVLREPIGVVGLITPWNYPMLMA 168 (503)
T ss_dssp CCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHTTEEECCSCTTEEEEEEEEECCEEEEECCSSSHHHHH
T ss_pred CCCHHHH------------HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCccceEEEcCCceEEEECCCchHHHHH
Confidence 7766442 1578888999998887 333222221 111111356788999999999999999 999985
Q ss_pred -HHHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCC-chhHHhhhcCCCccEEEecCCHHHHHH
Q 005131 418 -QIAALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNRLVSQ 495 (713)
Q Consensus 418 -~~~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~-~~~~~~l~~~~~v~~v~fTGs~~~g~~ 495 (713)
++++|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+|. .++++.|..||+||+|+||||+++|+.
T Consensus 169 ~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~a---GlP~gvv~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~ 245 (503)
T 3iwj_A 169 TWKVAPALAAGCAAILKPSELASLTCLELGEICKEV---GLPPGVLNILTGLGPEAGAPLATHPDVDKVAFTGSSATGSK 245 (503)
T ss_dssp HHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHH---TCCTTSEEECCSCHHHHTHHHHTCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCcchHHHHHHHHHHHHh---CcCcCeEEEEeCCcHHHHHHHhhCCCccEEEEECcHHHHHH
Confidence 99999999999999999999999999999999999 8999999999984 678999999999999999999999999
Q ss_pred HHHhc---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH----------
Q 005131 496 IKEST---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI---------- 561 (713)
Q Consensus 496 i~~~~---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~---------- 561 (713)
|++.+ .||+++|||||||+||++|||++.| ..+++++|+|+||.|+|++|||||+++||+|+++|+
T Consensus 246 i~~~aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~ 325 (503)
T 3iwj_A 246 IMTAAAQLVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIATEFLNRIVKWIKNIKISD 325 (503)
T ss_dssp HHHHHGGGTCCEEEECCCCEEEEECSSSCHHHHHHHHHHHHTGGGGCCTTCEEEEEEETTTHHHHHHHHHHHHHTCCBSC
T ss_pred HHHHHhcCCCCEEEECCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCCcccCCeeEEcHHHHHHHHHHHHHHHHhccCCC
Confidence 99865 5999999999999999999999999 567788888999999999999999999999999873
Q ss_pred ------------------------HHHHhCCCEE-EcCCcc-----ccccC------C-CCCCCccccccCceEEEEEeC
Q 005131 562 ------------------------DNLRSEGVTL-YGGPRA-----SSLLN------I-PEPNSFHHEYNSMACTIEIVD 604 (713)
Q Consensus 562 ------------------------~~~~~~Ga~l-~gg~~~-----~~~~~------v-~~~~~~~eE~FgPvl~v~~~~ 604 (713)
++++++|+++ +||... +.|+. + ++|++++||+||||++|++|+
T Consensus 326 p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 405 (503)
T 3iwj_A 326 PLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTFS 405 (503)
T ss_dssp TTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCCSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEES
T ss_pred CCCCCCcccCccCHHHHHHHHHHHHHHHHCCCEEEecCCCCccCCCCceeCCeeeecCCCCchhhCceeeCceEEEEEeC
Confidence 4566789998 788542 34542 3 789999999999999999999
Q ss_pred CHHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhcee
Q 005131 605 DVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 684 (713)
Q Consensus 605 ~~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~ 684 (713)
|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||+|.||+|+ ++|++|+++||+
T Consensus 406 ~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~G~----~~G~~g~~~f~~ 481 (503)
T 3iwj_A 406 TEEEAIDLANDTVYGLGAAVISNDLERCERVTKAFKAGIVWVNCSQPCFTQAPWGGVKRSGFGR----ELGEWGLDNYLS 481 (503)
T ss_dssp SHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSSCCCCTTSCBCCSGGGEECC----BSHHHHHHTTEE
T ss_pred CHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcccCCC----cchHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999987778899999999999999 899999999999
Q ss_pred EEEEEECCC
Q 005131 685 TRWILKGSG 693 (713)
Q Consensus 685 ~k~v~~~~~ 693 (713)
.|+|+++..
T Consensus 482 ~k~v~~~~~ 490 (503)
T 3iwj_A 482 VKQVTQYIS 490 (503)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEeCC
Confidence 999998643
No 16
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=100.00 E-value=2.1e-80 Score=694.62 Aligned_cols=397 Identities=16% Similarity=0.181 Sum_probs=356.6
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+..+.+++|++..
T Consensus 31 ~P~t~~~i~~~~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ 102 (481)
T 3jz4_A 31 NPANGDKLGSVPKMG--------ADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLA 102 (481)
T ss_dssp CTTTCCEEEEEECBC--------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 467899999887775 999999999999999999999999999999999999999999999888777777664
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
++ ..|+..+++.+++++. ..+..+...+.. ..+...+++++|+|||++|+|| ||+.+. ++++|
T Consensus 103 ~a------------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 168 (481)
T 3jz4_A 103 EA------------KGEISYAASFIEWFAEEGKRIYGDTIPGH--QADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGP 168 (481)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHGGGCCEEEECCS--STTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhcCcccccc--CCCceEEEEEcCccEEEEECCCcchHHHHHHHHHH
Confidence 42 2688999999999987 444444433321 2456788999999999999999 999985 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHhc-
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~- 500 (713)
||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 169 ALaaGN~VVlKps~~tp~~~~~l~~l~~~a---GlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~fTGS~~~g~~i~~~aa 245 (481)
T 3jz4_A 169 ALAAGCTMVLKPASQTPFSALALAELAIRA---GVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCA 245 (481)
T ss_dssp HHHHTCEEEEECCTTSCHHHHHHHHHHHHH---TCCTTTEEECCBCTHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHT
T ss_pred HHHcCCEEEEECCCCCcHHHHHHHHHHHHh---CcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHh
Confidence 999999999999999999999999999999 999999999998 567899999999999999999999999999875
Q ss_pred --CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH----------------
Q 005131 501 --KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI---------------- 561 (713)
Q Consensus 501 --~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~---------------- 561 (713)
.+|+++|||||||+||++|||++.| ..+++++++|+||.|++++|||||+++||+|+++|+
T Consensus 246 ~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~ 325 (481)
T 3jz4_A 246 KDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGV 325 (481)
T ss_dssp TTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGHHHHHHHHHHHHTTCCBSCTTSTTC
T ss_pred hcCCceEEecCCCCeEEEcCCCCHHHHHHHHHHHHHHhCCCcccCCcEEEEeHHHHHHHHHHHHHHHHhccCCCCccCcC
Confidence 4999999999999999999999999 567788888999999999999999999999999873
Q ss_pred ------------------HHHHhCCCEE-EcCCcc---ccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHH
Q 005131 562 ------------------DNLRSEGVTL-YGGPRA---SSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGH 612 (713)
Q Consensus 562 ------------------~~~~~~Ga~l-~gg~~~---~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~ 612 (713)
++++++|+++ +||... +.|+. + ++|++++||+||||++|++|+|+||||++
T Consensus 326 ~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 405 (481)
T 3jz4_A 326 TIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQ 405 (481)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECCHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCceeccEEEecCCCCcccccccccCceEEEEEECCHHHHHHH
Confidence 4567789999 787542 34542 3 78999999999999999999999999999
Q ss_pred HHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEEEC
Q 005131 613 IHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKG 691 (713)
Q Consensus 613 ~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~ 691 (713)
+|+++|||++||||+|.++++++++++++|+||||++....+.+||||+|+||+|+ ++|++|+++||+.|+|+++
T Consensus 406 aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~----~~g~~g~~~~t~~k~v~~~ 480 (481)
T 3jz4_A 406 ANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGR----EGSKYGIEDYLEIKYMCIG 480 (481)
T ss_dssp HHCSSCCSEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCSGGGEESC----BSHHHHHHTTEEEEEEEEE
T ss_pred HhcCCCCceEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCcCCcccCcCCC----CchHHHHHHhhceeEEEEe
Confidence 99999999999999999999999999999999999987778899999999999999 8999999999999999875
No 17
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=100.00 E-value=6.4e-81 Score=701.45 Aligned_cols=400 Identities=16% Similarity=0.178 Sum_probs=353.4
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSR--RLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAA 343 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~ 343 (713)
++.+|+.++++...+ .+|+++|+++|++||+ .|+++|+++|.++|++++++|++++++|+..+.+++|++
T Consensus 58 nP~tg~~i~~v~~a~--------~~dv~~av~aA~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 129 (517)
T 2o2p_A 58 NPTDGSVICQVSLAQ--------VSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAV 129 (517)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHTSGGGTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred CCCCCCEEEEEeCCC--------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC
Confidence 366899999888775 9999999999999999 999999999999999999999999999998777777776
Q ss_pred HHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCcccccccccc-ccCCceeeeeeccceeEEEEecC-CchHHH-HH
Q 005131 344 EQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQ-LADGLFLEKTSCPLGVLLIVFES-RPDALV-QI 419 (713)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~ 419 (713)
..++. ..|+..+++.+++++. ..+..+...+... ...+...++.++|+|||++|+|| ||+.++ ++
T Consensus 130 ~~ea~-----------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~ 198 (517)
T 2o2p_A 130 YTLAL-----------KTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWK 198 (517)
T ss_dssp HHHHH-----------HTTTHHHHHHHHHHHHHGGGCCEEEECCCCCTTSCEEEEEEEEECCEEEEECCSSSHHHHHHHH
T ss_pred HHHHH-----------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCCceEEEEecCCccEEEECCCcchHHHHHHH
Confidence 54310 1468888999999987 4444444322110 01234678899999999999999 999985 99
Q ss_pred HHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHH
Q 005131 420 AALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKE 498 (713)
Q Consensus 420 ~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 498 (713)
++|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++
T Consensus 199 ~a~ALaaGNtVVlKps~~tp~ta~~l~~l~~ea---GlP~gvv~vv~g~g~~~g~~L~~~~~v~~V~FTGS~~~G~~I~~ 275 (517)
T 2o2p_A 199 TAACLAAGNTVVIKPAQVTPLTALKFAELTLKA---GIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMK 275 (517)
T ss_dssp HHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHT---TCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCCEEEEECCCccHHHHHHHHHHHHHh---CCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECCHHHHHHHHH
Confidence 999999999999999999999999999999999 899999999998 4678898999999999999999999999987
Q ss_pred hc----CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH------------
Q 005131 499 ST----KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI------------ 561 (713)
Q Consensus 499 ~~----~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~------------ 561 (713)
.+ .||+++|||||||+||++|||++.| ..+++++|+|+||.|+|++|+|||+++||+|+++|+
T Consensus 276 ~aa~~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~vGdp~ 355 (517)
T 2o2p_A 276 SCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPL 355 (517)
T ss_dssp HHHHHTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHHHHHHHHHHHHHTTCCBSCTT
T ss_pred HhHHhcCCeEEEECCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCeEEEEeHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 54 5999999999999999999999999 567778888999999999999999999999999873
Q ss_pred ----------------------HHHHhCCCEE-EcCCcc---ccccC------C-CCCCCccccccCceEEEEEeCC--H
Q 005131 562 ----------------------DNLRSEGVTL-YGGPRA---SSLLN------I-PEPNSFHHEYNSMACTIEIVDD--V 606 (713)
Q Consensus 562 ----------------------~~~~~~Ga~l-~gg~~~---~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~--~ 606 (713)
++++++|+++ +||... +.|+. + ++|++++||+||||++|++|+| +
T Consensus 356 ~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~~~ 435 (517)
T 2o2p_A 356 ERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDV 435 (517)
T ss_dssp STTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECTTCS
T ss_pred CCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeccccCCCCCCeECCEEEeCCCCCChhhhccccccEEEEEEcCCCCH
Confidence 4567789998 888642 44542 3 7899999999999999999999 9
Q ss_pred HHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEE
Q 005131 607 HAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 686 (713)
Q Consensus 607 ~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k 686 (713)
||||+++|+++|||+++|||+|.++++++++++++|+||||+++...+.+||||+|+||+|+ ++|++|+++||++|
T Consensus 436 deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~Gr----~~G~~~l~~~~~~k 511 (517)
T 2o2p_A 436 DAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGK----DLGEAALNEYLRIK 511 (517)
T ss_dssp HHHHHHHTCSSCCSCCEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCCGGGEECC----BSHHHHHHTTEEEE
T ss_pred HHHHHHHhcCCCCceEEEeCCCHHHHHHHHHhcCEeEEEECCCCCCCCCCCcCCcCcCCcCc----cChHHHHHHhCCce
Confidence 99999999999999999999999999999999999999999987677899999999999999 89999999999999
Q ss_pred EEEEC
Q 005131 687 WILKG 691 (713)
Q Consensus 687 ~v~~~ 691 (713)
+|+++
T Consensus 512 ~v~~~ 516 (517)
T 2o2p_A 512 TVTFE 516 (517)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 99874
No 18
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=6.5e-81 Score=702.02 Aligned_cols=402 Identities=15% Similarity=0.173 Sum_probs=353.7
Q ss_pred HHHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHH
Q 005131 265 LKVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAE 344 (713)
Q Consensus 265 ~~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~ 344 (713)
.++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+..+.+++|++.
T Consensus 47 ~nP~tg~~i~~~~~~~--------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 118 (521)
T 4e4g_A 47 FNPATGEVQGTVALAS--------DADLAAAVESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTI 118 (521)
T ss_dssp EETTTTEEEEEEECCC--------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCH
T ss_pred ECCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3467889889887764 99999999999999999999999999999999999999999999988888887766
Q ss_pred HhcCchhhHhHhhcCHHHHHHHHHHHHHHhcc-cCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHH
Q 005131 345 QEGYEKPLLSRLALKSGKISSLANSVRVLANM-EDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAA 421 (713)
Q Consensus 345 ~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~ 421 (713)
.++ ..|+..+++.+++++.. ....+..... ...+...++.++|+|||++|+|| ||+.++ ++++
T Consensus 119 ~ea------------~~Ev~~~~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a 184 (521)
T 4e4g_A 119 DDA------------KGDIVRGLEVCEFVIGIPHLQKSEFTEG--AGPGIDMYSIRQPVGIGAGITPFNFPGMIPMWMFA 184 (521)
T ss_dssp HHH------------HHHHHHHHHHHHHHHTHHHHTCEEEEEE--EETTEEEEEEEEECCEEEEECCSSCTTHHHHHHHH
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHhcCccccc--CCCCcceeEEEcCCcEEEEECCCcchHHHHHHHHH
Confidence 442 26899999999999873 2233322211 12456788999999999999999 999985 9999
Q ss_pred HHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHHhc-
Q 005131 422 LAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST- 500 (713)
Q Consensus 422 ~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~- 500 (713)
|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+|+.+.++.|..||+||+|+||||+++||.|++.+
T Consensus 185 ~ALaaGN~VVlKpse~tp~t~~~l~~l~~ea---GlP~gvv~vv~g~~~~~~~L~~~p~vd~I~FTGS~~vG~~i~~~aa 261 (521)
T 4e4g_A 185 PAIACGNAFILKPSERDPSVPIRLAELMIEA---GLPAGILNVVNGDKGAVDAILTHPDIAAVSFVGSTPIARYVYGTAA 261 (521)
T ss_dssp HHHHTTCEEEEECCTTSTHHHHHHHHHHHHT---TCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCCcchHHHHHHHHHHHHh---CCCcCeEEEEeCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 899999999998766678888899999999999999999999864
Q ss_pred --CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCC-CchhHHHHHH---------------
Q 005131 501 --KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQD-LVPTGFNELI--------------- 561 (713)
Q Consensus 501 --~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~-i~d~fi~~l~--------------- 561 (713)
+||+++|||||||+||++|||++.| ..+++++|+|+||.|+|++|+|||++ +||+|+++|+
T Consensus 262 ~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~~i~d~f~~~l~~~~~~~~vG~~~~~~ 341 (521)
T 4e4g_A 262 MNGKRAQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAISVAVPVGEETANRLIDKLVPMVESLRIGPYTDEK 341 (521)
T ss_dssp HTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTSEEEEEEBSHHHHHHHHHHHHHHHHTCCBCCTTCTT
T ss_pred hcCCCeeecCCCCCeEEEcCCCCHHHHHHHHHHHHHhCCCCCcccCeEEEEeCchHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 6999999999999999999999999 56777778899999999999999999 9999999873
Q ss_pred -------------------HHHHhCCCEE-EcCCc-------cccccC------C-CCCCCccccccCceEEEEEeCCHH
Q 005131 562 -------------------DNLRSEGVTL-YGGPR-------ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVH 607 (713)
Q Consensus 562 -------------------~~~~~~Ga~l-~gg~~-------~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~ 607 (713)
++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+|
T Consensus 342 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 421 (521)
T 4e4g_A 342 ADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRARNYE 421 (521)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEECCBSSHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHCCCEEEecCcccCCCcCCCCcEECCEEEEcCCCCCHhhcCcccCcEEEEEEeCCHH
Confidence 4566789998 78853 234542 3 789999999999999999999999
Q ss_pred HHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCC-CCCCCccCccceeeccccCCCcccchHhhceeEE
Q 005131 608 AAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 686 (713)
Q Consensus 608 eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k 686 (713)
|||+++|+++|||++||||+|.++++++++++++|+||||+++.. .+.+||||+|.||+|+. +++|++|+++||+.|
T Consensus 422 eAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~k~SG~G~~--~~~G~~gl~~ft~~K 499 (521)
T 4e4g_A 422 EALSLPMKHEYGNGVAIYTRDGDAARDFASRINIGMVGVNVPIPVPLAYHSFGGWKSSSFGDL--NQHGTDSIKFWTRTK 499 (521)
T ss_dssp HHHHHHHHSSEESEEEEECSBHHHHHHHHHHCCCSEEEESCSSCCCCTTSCBCCEETTEESSC--CBSHHHHHHHTEEEE
T ss_pred HHHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCCcCCcccCCCCCC--ccchHHHHHHhheEE
Confidence 999999999999999999999999999999999999999998654 47899999999999931 178999999999999
Q ss_pred EEEECCC
Q 005131 687 WILKGSG 693 (713)
Q Consensus 687 ~v~~~~~ 693 (713)
+|+++..
T Consensus 500 ~v~~~~~ 506 (521)
T 4e4g_A 500 TITSRWP 506 (521)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 9998654
No 19
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=100.00 E-value=1.3e-80 Score=697.04 Aligned_cols=397 Identities=17% Similarity=0.191 Sum_probs=354.1
Q ss_pred HhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHH
Q 005131 267 VLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSR---RLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAA 343 (713)
Q Consensus 267 ~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~ 343 (713)
+.||+.++++...+ .+|+++|+++|++||+ .|+++++++|.++|++++++|++|+++|+..+.+++|++
T Consensus 42 P~tg~~i~~~~~~~--------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 113 (500)
T 1o04_A 42 PSTGEVICQVAEGD--------KEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKP 113 (500)
T ss_dssp TTTTEEEEEEECBC--------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred CCCCCEEEEEeCCC--------HHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 56889999887775 9999999999999999 999999999999999999999999999998888888776
Q ss_pred HHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHH
Q 005131 344 EQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIA 420 (713)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~ 420 (713)
..+.. ..|+..+++.++++++ ..+..+...+. ..+...+++++|+|||++|+|| ||+.+. +++
T Consensus 114 ~~ea~-----------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 179 (500)
T 1o04_A 114 YVISY-----------LVDLDMVLKCLRYYAGWADKYHGKTIPI---DGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKL 179 (500)
T ss_dssp HHHHH-----------HTHHHHHHHHHHHHHHHTTTCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred HHHHH-----------HHHHHHHHHHHHHHHHHHHHhhCcceec---CCCceEEEEEecCCcEEEECCCCchHHHHHHHH
Confidence 64310 1478889999999987 54544443221 2355678899999999999999 999885 999
Q ss_pred HHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHh
Q 005131 421 ALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKES 499 (713)
Q Consensus 421 ~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 499 (713)
+|||++||+||+|||+.+|+++..+++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.
T Consensus 180 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~a---GlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~ 256 (500)
T 1o04_A 180 GPALATGNVVVMKVAEQTPLTALYVANLIKEA---GFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVA 256 (500)
T ss_dssp HHHHHTTCEEEEECCTTSCHHHHHHHHHHHHH---TCCTTSEEECCBCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCccChHHHHHHHHHHHHh---CCCcCeEEEEecCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHHh
Confidence 99999999999999999999999999999999 899999999998 56789999999999999999999999999875
Q ss_pred c----CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH-------------
Q 005131 500 T----KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI------------- 561 (713)
Q Consensus 500 ~----~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~------------- 561 (713)
+ +||+++|||||||+||++|||++.| ..+++++|+|+||.|++++|+|||+++||+|+++|+
T Consensus 257 aa~~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~ 336 (500)
T 1o04_A 257 AGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFD 336 (500)
T ss_dssp HHHTTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHHHHHHHHHHHHHHHCCBCCTTS
T ss_pred hhhhcCceEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhccCCCCCCCCCEEEEehhHHHHHHHHHHHHHHhCcCCCccc
Confidence 3 5999999999999999999999999 567778888999999999999999999999999873
Q ss_pred ---------------------HHHHhCCCEE-EcCCcc---ccccC------C-CCCCCccccccCceEEEEEeCCHHHH
Q 005131 562 ---------------------DNLRSEGVTL-YGGPRA---SSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAA 609 (713)
Q Consensus 562 ---------------------~~~~~~Ga~l-~gg~~~---~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eA 609 (713)
++++++|+++ +||... +.|+. + ++|++++||+||||++|++|+|+|||
T Consensus 337 ~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deA 416 (500)
T 1o04_A 337 SKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEV 416 (500)
T ss_dssp TTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCCSSSSCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECCHHHH
T ss_pred ccCccCcccCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEeCCCCCChhhhCcccceEEEEEeeCCHHHH
Confidence 4456789998 788653 44542 3 68899999999999999999999999
Q ss_pred HHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEE
Q 005131 610 IGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 689 (713)
Q Consensus 610 i~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~ 689 (713)
|+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||+|.||+|+ ++|++|+++|++.|+|+
T Consensus 417 i~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G~----~~G~~gl~~f~~~K~v~ 492 (500)
T 1o04_A 417 VGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGR----ELGEYGLQAYTEVKTVT 492 (500)
T ss_dssp HHHHHCSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCSGGGEESC----BSTGGGGGGGEEEEEEE
T ss_pred HHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCcCCCCCCc----cchHHHHHHhcceEEEE
Confidence 99999999999999999999999999999999999999987667889999999999998 89999999999999998
Q ss_pred ECC
Q 005131 690 KGS 692 (713)
Q Consensus 690 ~~~ 692 (713)
++.
T Consensus 493 ~~~ 495 (500)
T 1o04_A 493 VKV 495 (500)
T ss_dssp EEC
T ss_pred Eec
Confidence 853
No 20
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=100.00 E-value=1.7e-80 Score=696.18 Aligned_cols=398 Identities=17% Similarity=0.175 Sum_probs=354.7
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSR---RLQAMSSEDRKKILLDIADALEANEELIIEENEADVAA 342 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~ 342 (713)
++.+|+.++++...+ .+|+++|+++|++||+ .|++++.++|.++|++++++|++|+++|+..+.+++|+
T Consensus 42 nP~tg~~i~~~~~~~--------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 113 (501)
T 1bxs_A 42 NPATEEKLCEVEEGD--------KEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGK 113 (501)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTC
T ss_pred CCCCCCEEEEEeCCC--------HHHHHHHHHHHHHHhhcccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356899999887775 9999999999999999 89999999999999999999999999999888888877
Q ss_pred HHHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HH
Q 005131 343 AEQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QI 419 (713)
Q Consensus 343 ~~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~ 419 (713)
+..+.. ..|+..+++.+++++. ..+..+...+. ..+...+++++|+|||++|+|| ||+.+. ++
T Consensus 114 ~~~e~~-----------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~ 179 (501)
T 1bxs_A 114 LFSNAY-----------LMDLGGCIKTLRYCAGWADKIQGRTIPM---DGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWK 179 (501)
T ss_dssp CHHHHH-----------HTHHHHHHHHHHHHHHHGGGCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHH
T ss_pred CHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhCCeeec---cCCcceeEEecCCceEEEECCCcchHHHHHHH
Confidence 764310 1578888999999987 54444443221 2355678899999999999999 999885 99
Q ss_pred HHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHH
Q 005131 420 AALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKE 498 (713)
Q Consensus 420 ~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 498 (713)
++|||++||+||+|||+.+|+++..+++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++
T Consensus 180 ~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~a---GlP~gv~~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~ 256 (501)
T 1bxs_A 180 IGPALSCGNTVVVKPAEQTPLTALHMGSLIKEA---GFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKE 256 (501)
T ss_dssp HHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHH---TCCTTSEEECCSCTTTHHHHHHTCTTCSEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCCeeeccCCCccHHHHHHHHHHHHHh---CCCcceEEEEecCchHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 999999999999999999999999999999999 899999999998 5778999999999999999999999999987
Q ss_pred hc----CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH------------
Q 005131 499 ST----KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI------------ 561 (713)
Q Consensus 499 ~~----~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~------------ 561 (713)
.+ .||+++|||||||+||++|||++.| ..+++++|+|+||.|+|++|||||+++||+|+++|+
T Consensus 257 ~aa~~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~ 336 (501)
T 1bxs_A 257 AAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPL 336 (501)
T ss_dssp HHHHTTCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTTTTCCTTCCCEEEEEHHHHHHHHHHHHHHHTCCCBSCTT
T ss_pred HhhhccCCcEEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEchhHHHHHHHHHHHHHHhcCCCCCc
Confidence 53 5999999999999999999999999 567788889999999999999999999999999873
Q ss_pred ----------------------HHHHhCCCEE-EcCCcc---ccccC------C-CCCCCccccccCceEEEEEeCCHHH
Q 005131 562 ----------------------DNLRSEGVTL-YGGPRA---SSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHA 608 (713)
Q Consensus 562 ----------------------~~~~~~Ga~l-~gg~~~---~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~e 608 (713)
++++++|+++ +||... +.|+. + ++|++++||+||||++|++|+|+||
T Consensus 337 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 416 (501)
T 1bxs_A 337 TPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDD 416 (501)
T ss_dssp STTCCBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCSEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEECCHHH
T ss_pred ccCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEecCCCCCHHHhcccccceEEEEEeCCHHH
Confidence 4566789999 787642 44542 3 6889999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEE
Q 005131 609 AIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 688 (713)
Q Consensus 609 Ai~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v 688 (713)
||+++|+++|||++||||+|.++++++++++++|+||||+++...+.+||||+|.||+|+ ++|++|+++|++.|+|
T Consensus 417 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~pfGG~k~SG~G~----~~G~~~l~~f~~~K~v 492 (501)
T 1bxs_A 417 VIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGR----ELGEYGFHEYTEVKTV 492 (501)
T ss_dssp HHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCCCCCTTSCBCCSGGGEESC----BSHHHHHHTTEEEEEE
T ss_pred HHHHHhcCCCCeeEEEEcCCHHHHHHHHHhcCeeEEEECCCCCCCCCCCCCCcCcCCcCc----cchHHHHHHhhCeeEE
Confidence 999999999999999999999999999999999999999987667889999999999998 8999999999999999
Q ss_pred EECC
Q 005131 689 LKGS 692 (713)
Q Consensus 689 ~~~~ 692 (713)
+++.
T Consensus 493 ~~~~ 496 (501)
T 1bxs_A 493 TIKI 496 (501)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 8853
No 21
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=100.00 E-value=3.6e-80 Score=692.51 Aligned_cols=397 Identities=15% Similarity=0.162 Sum_probs=352.2
Q ss_pred HHHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHH
Q 005131 265 LKVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAE 344 (713)
Q Consensus 265 ~~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~ 344 (713)
.++.||+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+..+.+++|++.
T Consensus 43 ~nP~tg~~i~~~~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 114 (495)
T 1wnd_A 43 YNPATGDVLLEIAEAS--------AEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPL 114 (495)
T ss_dssp EETTTTEEEEEEECCC--------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEeCCC--------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3567889888887765 99999999999999999999999999999999999999999999988877777766
Q ss_pred HhcCchhhHhHhhcCHH-HHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHH
Q 005131 345 QEGYEKPLLSRLALKSG-KISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIA 420 (713)
Q Consensus 345 ~~~~~~~~~~~l~~~~~-ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~ 420 (713)
.++ .. |+..+++.+++++. ..+..++..+.. .++...+++++|+|||++|+|| ||+.+. +++
T Consensus 115 ~ea------------~~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 180 (495)
T 1wnd_A 115 HSA------------FNDEIPAIVDVFRFFAGAARCLNGLAAGEY--LEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKL 180 (495)
T ss_dssp HHH------------HHTHHHHHHHHHHHHHHHTTCCEEECBEEE--ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHH
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHHhcCccccCC--CCCceeEEeeecCCeEEEECCCcchHHHHHHHH
Confidence 442 14 78889999999987 444444433221 1345678899999999999999 999884 999
Q ss_pred HHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHh
Q 005131 421 ALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKES 499 (713)
Q Consensus 421 ~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 499 (713)
+|||++||+||+|||+.+|+++.++++++.++ +|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.
T Consensus 181 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea----lP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~ 256 (495)
T 1wnd_A 181 APALAAGNCVVLKPSEITPLTALKLAELAKDI----FPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISH 256 (495)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHTTT----SCTTSEEECCCCTTTTHHHHHTCTTEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCCeeEeeCCCCChHHHHHHHHHHHHh----CCcCeEEEEeCCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHH
Confidence 99999999999999999999999999999998 67779999998 56788888889999999999999999999987
Q ss_pred c---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH--------------
Q 005131 500 T---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI-------------- 561 (713)
Q Consensus 500 ~---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~-------------- 561 (713)
+ .||+++|||||||+||++|||++.| ..+++++++|+||.|+|++|+|||+++||+|+++|+
T Consensus 257 aa~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~ 336 (495)
T 1wnd_A 257 TASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDE 336 (495)
T ss_dssp HGGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCCCEEEEETTTHHHHHHHHHHHHHTCCBCCTTST
T ss_pred HHhcCCccccccCCCCeEEECCcCCHHHHHHHHHHHHHhcCCCCCCCCcEEEecchhHHHHHHHHHHHHHhccCCCCccC
Confidence 5 6999999999999999999999999 567777888999999999999999999999999873
Q ss_pred --------------------HHHHhCC-CEE-EcCC-c--cccccC------C-CCCCCccccccCceEEEEEeCCHHHH
Q 005131 562 --------------------DNLRSEG-VTL-YGGP-R--ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAA 609 (713)
Q Consensus 562 --------------------~~~~~~G-a~l-~gg~-~--~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eA 609 (713)
++++++| +++ +||. . .+.|+. + ++|++++||+||||++|++|+|+|||
T Consensus 337 ~~~~Gpli~~~~~~rv~~~i~~a~~~G~a~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deA 416 (495)
T 1wnd_A 337 STELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQV 416 (495)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTSSCEEEECCSBCSSSSCCBCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHH
T ss_pred CCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEECCcccCCCCCeeCCEEEeCCCCCChhhhccccCceEEEEEeCCHHHH
Confidence 4456679 998 7886 4 245542 3 68899999999999999999999999
Q ss_pred HHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEE
Q 005131 610 IGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 689 (713)
Q Consensus 610 i~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~ 689 (713)
|+++|+++|||+++|||+|.++++++++++++|+|+||+++...+.+||||+|.||+|+ ++|++|+++||++|+|+
T Consensus 417 i~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~f~~~k~v~ 492 (495)
T 1wnd_A 417 VNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGK----DMSLYGLEDYTVVRHVM 492 (495)
T ss_dssp HHHHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCCCCCTTSCBCCSGGGEECC----BSHHHHHHTTEEEEEEE
T ss_pred HHHHhcCCCCeeEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCCcCcCCc----cchHHHHHHhhCeEEEE
Confidence 99999999999999999999999999999999999999987677899999999999998 89999999999999998
Q ss_pred EC
Q 005131 690 KG 691 (713)
Q Consensus 690 ~~ 691 (713)
++
T Consensus 493 ~~ 494 (495)
T 1wnd_A 493 VK 494 (495)
T ss_dssp EE
T ss_pred ec
Confidence 63
No 22
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=100.00 E-value=1.6e-80 Score=701.32 Aligned_cols=413 Identities=18% Similarity=0.202 Sum_probs=352.8
Q ss_pred HHHHhc-CCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHH
Q 005131 264 ILKVLQ-GERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAA 342 (713)
Q Consensus 264 l~~~~t-ge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~ 342 (713)
+.++.+ |+.++++...+ .+|+++|+++|++||+.|+++++++|.++|++++++|++++++|+..+.+++|+
T Consensus 55 ~~nP~t~~~~i~~~~~~~--------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 126 (538)
T 3qan_A 55 SWNPARKDQLVGSVSKAN--------QDLAEKAIQSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGK 126 (538)
T ss_dssp EECSSSTTCEEEEEECBC--------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCC
T ss_pred EECCCCCCcEEEEEcCCC--------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 346778 88888887775 999999999999999999999999999999999999999999999877777776
Q ss_pred HHHhcCchhhHhHhhcCHHHHHHHHHHHHHHhcc-cC-ccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-H
Q 005131 343 AEQEGYEKPLLSRLALKSGKISSLANSVRVLANM-ED-PIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-Q 418 (713)
Q Consensus 343 ~~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~~-~~-~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~ 418 (713)
+..++ ..|+..+++.+++++.. .+ ..++..+. ..+...++.++|+|||++|+|| ||+.++ +
T Consensus 127 ~~~ea------------~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~ 191 (538)
T 3qan_A 127 PWKEA------------DADTAEAIDFLEYYARQMIELNRGKEILS---RPGEQNRYFYTPMGVTVTISPWNFALAIMVG 191 (538)
T ss_dssp CHHHH------------HHHHHHHHHHHHHHHHHHHHHHTCBCCCC---CTTEEEEEEEEECCEEEEECCSTTTTHHHHH
T ss_pred CHHHH------------HHHHHHHHHHHHHHHHHHHHhcCCeeecc---cCCcceeeecCCCcEEEEECCCchHHHHHHH
Confidence 65432 15788889999998873 22 23332221 1356788999999999999999 999885 9
Q ss_pred HHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHH
Q 005131 419 IAALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIK 497 (713)
Q Consensus 419 ~~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~ 497 (713)
+++|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|+
T Consensus 192 ~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~ea---GlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~ 268 (538)
T 3qan_A 192 TAVAPIVTGNTVVLKPASTTPVVAAKFVEVLEDA---GLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLY 268 (538)
T ss_dssp HHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHT---TCCTTSEEECCBCTTTTHHHHHHCTTEEEEEEESCHHHHHHHH
T ss_pred HHHHHHHcCCEEEEECCCccHHHHHHHHHHHHHh---CCCCCeEEEEecCCHHHHHHHHhCCCcCEEEEECCHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999998 577899999999999999999999999999
Q ss_pred Hhc---------CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH------
Q 005131 498 EST---------KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI------ 561 (713)
Q Consensus 498 ~~~---------~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~------ 561 (713)
+.+ .||+++|||||||+||++|||++.| ..+++++++|+||.|+|++|+|||+++||+|+++|+
T Consensus 269 ~~aa~~~~~~~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~ 348 (538)
T 3qan_A 269 ERAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVYDEVLEKTVALAKNL 348 (538)
T ss_dssp HHHTSCCTTCCSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEETTTHHHHHHHHHHHHTTC
T ss_pred HHhhhccccccccccEEEecCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCCccCceeEEehHHHHHHHHHHHHHHHhc
Confidence 864 6899999999999999999999999 567788888999999999999999999999999873
Q ss_pred ----------------------------HHHHhCCCEE-EcCCcc---ccccC------C-CCCCCccccccCceEEEEE
Q 005131 562 ----------------------------DNLRSEGVTL-YGGPRA---SSLLN------I-PEPNSFHHEYNSMACTIEI 602 (713)
Q Consensus 562 ----------------------------~~~~~~Ga~l-~gg~~~---~~~~~------v-~~~~~~~eE~FgPvl~v~~ 602 (713)
++++++| ++ +||... +.|+. + ++|++++||+||||++|++
T Consensus 349 ~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~G-~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~ 427 (538)
T 3qan_A 349 TVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEG-RLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSK 427 (538)
T ss_dssp CBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHS-EEEECCCEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEE
T ss_pred cCCCCCCCCCCCcCccCHHHHHHHHHHHHHHHHCC-eEEeCCCcCCCCCceeCCeeeecCCCCChhhCCCcCCcEEEEEE
Confidence 4566778 87 888642 44542 3 7899999999999999999
Q ss_pred eCCHHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEc-CCCCC-CCCCCccCccceeec-cccCCCcccchH
Q 005131 603 VDDVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHN-ASTRF-CDGARFGLGAEVGIS-TSRIHARGPVGV 679 (713)
Q Consensus 603 ~~~~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN-~~~~~-~~~~pfGG~k~SG~g-~~~~~~~g~~~l 679 (713)
|+|+||||+++|+++|||++||||+|.+++.++++++++|+|||| .++.. .+.+||||+|+||+| + ++|++|+
T Consensus 428 ~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~~PfGG~k~SG~G~~----~~G~~gl 503 (538)
T 3qan_A 428 ANDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSK----AGGPDYL 503 (538)
T ss_dssp ESSHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHCCCSEEEESSCSCCCCTTTSCBCCEETTBSCCC----BTSTTTG
T ss_pred eCCHHHHHHHHhcCCCCcEEEEECCCHHHHHHHHHhCCeeEEEEeCCCCCCCCCCCCcCCcCcCCCCcc----cccHHHH
Confidence 999999999999999999999999999999999999999999999 55654 789999999999999 8 8999999
Q ss_pred hhceeEEEEEECCCe---eecCCCCcccccc
Q 005131 680 EGLLTTRWILKGSGQ---VVDGDKGVEYIHE 707 (713)
Q Consensus 680 ~~~~~~k~v~~~~~~---~~~~~~~~~~~~~ 707 (713)
++||+.|+|+++.+. ++++--+-||-|-
T Consensus 504 ~~ft~~k~v~~~~~~~~~~~~~~~~~~~~~~ 534 (538)
T 3qan_A 504 ALHMQAKTVSEMYAENLYFQSHHHHHHWSHP 534 (538)
T ss_dssp GGGEEEEEEEEEC------------------
T ss_pred HHhhCeEEEEEecCCccccCccccccccccc
Confidence 999999999987643 3345556667653
No 23
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.3e-80 Score=694.81 Aligned_cols=397 Identities=17% Similarity=0.166 Sum_probs=353.9
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSR--RLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAA 343 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~ 343 (713)
++.+|+.++++...+ .+|+++|+++|++||+ .|+++++++|.++|++++++|++++++|+..+.+++|++
T Consensus 30 nP~tg~~i~~~~~~~--------~~~v~~av~~A~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 101 (495)
T 3b4w_A 30 CPATGEYVGKVPMAA--------AADVDAAVAAARAAFDNGPWPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQP 101 (495)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHSSTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred CCCCCCEEEEEeCCC--------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 466889999887775 9999999999999999 899999999999999999999999999998888888776
Q ss_pred HHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHH
Q 005131 344 EQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIA 420 (713)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~ 420 (713)
..++. ..|+..+++.+++++. ..+..++..+. +.+...+++++|+|||++|+|| ||+.+. +++
T Consensus 102 ~~ea~-----------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 167 (495)
T 3b4w_A 102 PTIIE-----------TMHWMGSMGAMNYFAGAADKVTWTETRT---GSYGQSIVSREPVGVVGAIVAWNVPLFLAVNKI 167 (495)
T ss_dssp HHHHH-----------HTTTHHHHHHHHHHHTCGGGSCSEEEEE---ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred HHHHH-----------HHHHHHHHHHHHHHHHHHHHhcCCcccC---CCCceEEEEEccCceEEEECCCcchHHHHHHHH
Confidence 64410 0467788999999987 44444443221 2344678899999999999999 999985 999
Q ss_pred HHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHHhc
Q 005131 421 ALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST 500 (713)
Q Consensus 421 ~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~ 500 (713)
+|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+|+.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 168 ~~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea---GlP~gvv~vv~g~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~~a 244 (495)
T 3b4w_A 168 APALLAGCTIVLKPAAETPLTANALAEVFAEV---GLPEGVLSVVPGGIETGQALTSNPDIDMFTFTGSSAVGREVGRRA 244 (495)
T ss_dssp HHHHHTTCEEEEECBTTSCHHHHHHHHHHHHT---TCCTTSEEECCBSHHHHHHHTTCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEecCCccHHHHHHHHHHHHHh---CCCcCeEEEEeCCHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999 899999999999667888898999999999999999999999875
Q ss_pred ---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH---------------
Q 005131 501 ---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI--------------- 561 (713)
Q Consensus 501 ---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~--------------- 561 (713)
.||+++|||||||+||++|||++.| ..+++++++|+||.|+|++|+|||+++||+|+++|+
T Consensus 245 a~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~ 324 (495)
T 3b4w_A 245 AEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRYDEIVAAVTNFVTALPVGPPSDPA 324 (495)
T ss_dssp HHTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGHHHHHHHHHHHHHHSCBCCTTCTT
T ss_pred hhcCCceeecCCCcceEEECCCCCHHHHHHHHHHHHhhcCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcCCCCCccCC
Confidence 6999999999999999999999999 567778888999999999999999999999999873
Q ss_pred -------------------HHHHhCCCEE-EcCCcc-----ccccC------C-CCCCCccccccCceEEEEEeCCHHHH
Q 005131 562 -------------------DNLRSEGVTL-YGGPRA-----SSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAA 609 (713)
Q Consensus 562 -------------------~~~~~~Ga~l-~gg~~~-----~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eA 609 (713)
++++++|+++ +||... +.|+. + ++|++++||+||||++|++|+|+|||
T Consensus 325 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deA 404 (495)
T 3b4w_A 325 AQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEEDA 404 (495)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHH
T ss_pred CccCCCcCHHHHHHHHHHHHHHHhCCCEEEecCcccccccCCceeCCEEecCCCCCChhhhcccccceEEEEecCCHHHH
Confidence 4456679998 788642 44542 3 68899999999999999999999999
Q ss_pred HHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEE
Q 005131 610 IGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 689 (713)
Q Consensus 610 i~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~ 689 (713)
|+++|+++|||++||||+|.+++.++++++++|+|+||+++ ..+.+||||+|.||+|+ ++|++|+++|+++|+|+
T Consensus 405 i~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~-~~~~~PfGG~k~SG~Gr----~~G~~gl~~~~~~k~v~ 479 (495)
T 3b4w_A 405 IAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGTYGINWYA-FDPGSPFGGYKNSGIGR----ENGPEGVEHFTQQKSVL 479 (495)
T ss_dssp HHHHHCSSCCSCCEEECSCHHHHHHHHHHSCCSCCEESSCC-CCTTSCBCCSGGGEESC----BSHHHHHHTTEEEEEEE
T ss_pred HHHHhcCCCCeEEEEECCCHHHHHHHHHhCCEeEEEECCCC-CCCCCCCCCCCCCCcCc----cchHHHHHHhcceeEEE
Confidence 99999999999999999999999999999999999999987 77899999999999998 89999999999999999
Q ss_pred ECC
Q 005131 690 KGS 692 (713)
Q Consensus 690 ~~~ 692 (713)
++.
T Consensus 480 ~~~ 482 (495)
T 3b4w_A 480 LPM 482 (495)
T ss_dssp CCT
T ss_pred Ecc
Confidence 864
No 24
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=100.00 E-value=1.3e-79 Score=687.85 Aligned_cols=398 Identities=19% Similarity=0.199 Sum_probs=354.1
Q ss_pred HHHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHH
Q 005131 265 LKVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAE 344 (713)
Q Consensus 265 ~~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~ 344 (713)
.++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|+..+.+++|++.
T Consensus 27 ~~P~tg~~~~~~~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 98 (479)
T 2imp_A 27 VNPATEAVISRIPDGQ--------AEDARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQ 98 (479)
T ss_dssp ECTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEeCCC--------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3467899999887775 99999999999999999999999999999999999999999999988877777765
Q ss_pred HhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHH
Q 005131 345 QEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAA 421 (713)
Q Consensus 345 ~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~ 421 (713)
.++ ..|+..+++.+++++. ..+..+...+.. ..+...++.++|+|||++|+|| ||+.+. ++++
T Consensus 99 ~ea------------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~ 164 (479)
T 2imp_A 99 QLA------------EVEVAFTADYIDYMAEWARRYEGEIIQSD--RPGENILLFKRALGVTTGILPWNFPFFLIARKMA 164 (479)
T ss_dssp HHH------------HHHHHHHHHHHHHHHTTTTTCCCEEECCS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHH
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHhhCCccccC--CCCceeEEEEeccceEEEECCCchHHHHHHHHHH
Confidence 441 1689999999999997 444444432211 1355678999999999999999 999985 9999
Q ss_pred HHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCC-chhHHhhhcCCCccEEEecCCHHHHHHHHHhc
Q 005131 422 LAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST 500 (713)
Q Consensus 422 ~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~ 500 (713)
|||++||+||+|||+.+|+++..+++++.++ |+|+|+||+|+|+ +++++.|..||+||+|+||||+++|+.|++.+
T Consensus 165 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~~a---GlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~a 241 (479)
T 2imp_A 165 PALLTGNTIVIKPSEFTPNNAIAFAKIVDEI---GLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMATA 241 (479)
T ss_dssp HHHHTTCEEEEECCTTSCHHHHHHHHHHHHH---TCCTTSEEECCSCTTTHHHHHHHCTTEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCccchHHHHHHHHHHHHh---CCCcCeEEEEECCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 8999999999984 67899999999999999999999999999865
Q ss_pred ---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHH--------------
Q 005131 501 ---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELID-------------- 562 (713)
Q Consensus 501 ---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~-------------- 562 (713)
+||+++|||||||+||++|||++.| ..+++++++|+||.|+|++|+|||+++||+|+++|++
T Consensus 242 a~~~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~ 321 (479)
T 2imp_A 242 AKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERN 321 (479)
T ss_dssp HTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHTTSSTTTTCCSSSCSEEEEEGGGHHHHHHHHHHHHHTCCBSCTTTCS
T ss_pred hccCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCcCCcEEEEehhhHHHHHHHHHHHHHhcccCCccccC
Confidence 5999999999999999999999999 5667777889999999999999999999999998843
Q ss_pred ---------------------HHHhCCCEE-EcCCc---cccccC------C-CCCCCccccccCceEEEEEeCCHHHHH
Q 005131 563 ---------------------NLRSEGVTL-YGGPR---ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAI 610 (713)
Q Consensus 563 ---------------------~~~~~Ga~l-~gg~~---~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi 610 (713)
+++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||||
T Consensus 322 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPVl~v~~~~~~~eAi 401 (479)
T 2imp_A 322 DIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAI 401 (479)
T ss_dssp SCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSSCCCCCEEEESCCTTSGGGGSCCCSSEEEEEEESSHHHHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCceECCEEEeCCCCCCHHHhCccCCceEEEEeeCCHHHHH
Confidence 345679998 78864 245542 3 789999999999999999999999999
Q ss_pred HHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEEE
Q 005131 611 GHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILK 690 (713)
Q Consensus 611 ~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~ 690 (713)
+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||+|+||+|+ ++|++|+++||++|+|++
T Consensus 402 ~~aN~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~----~~g~~~l~~~~~~k~v~~ 477 (479)
T 2imp_A 402 SMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGG----ADGKHGLHEYLQTQVVYL 477 (479)
T ss_dssp HHHHCSSEESEEEEECCCHHHHHHHHHHCCSSEEEESSCCCCCTTSCBCCEETTEESC----BSHHHHHHTTEEEEEEEE
T ss_pred HHHhcCCCCeeEEEECCCHHHHHHHHHhCCEeEEEECCCCCCCCCCCCCCCCCCCCCC----CchHHHHHHhcCeeEEEe
Confidence 9999999999999999999999999999999999999987667899999999999998 899999999999999987
Q ss_pred C
Q 005131 691 G 691 (713)
Q Consensus 691 ~ 691 (713)
+
T Consensus 478 ~ 478 (479)
T 2imp_A 478 Q 478 (479)
T ss_dssp E
T ss_pred c
Confidence 4
No 25
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=8.6e-80 Score=691.77 Aligned_cols=400 Identities=17% Similarity=0.195 Sum_probs=358.4
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|+..+.+++|++..
T Consensus 28 ~P~tg~~~~~~~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ 99 (490)
T 2ve5_A 28 NPANGEVLAKVQRAS--------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLA 99 (490)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 467889999887775 999999999999999999999999999999999999999999999888888887765
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
++. ..|+..+++.+++++. ..+..+...+. ..+...+++++|+|||++|+|| ||+.++ ++++|
T Consensus 100 ea~-----------~~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~ 165 (490)
T 2ve5_A 100 ETR-----------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAP 165 (490)
T ss_dssp HHT-----------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHH
T ss_pred HHh-----------HHHHHHHHHHHHHHHHHHHHhcCccccC---CCCceeeEeeccccEEEEECCCcchHHHHHHHHHH
Confidence 421 0388889999999987 44433333321 2456788999999999999999 999985 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHhc-
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~- 500 (713)
||++||+||+|||+.+|+++.+|++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 166 ALaaGN~vVlKps~~tp~t~~~l~~l~~~a---GlP~gvv~vv~g~~~~~~~~L~~~p~vd~v~fTGS~~~g~~i~~~a~ 242 (490)
T 2ve5_A 166 ALAAGNAMIFKPSEVTPLTALKLAEIYTEA---GVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASAS 242 (490)
T ss_dssp HHHTTCEEEEECCTTSCHHHHHHHHHHHHH---TCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCCcchHHHHHHHHHHHHh---CcCcCeEEEEeCCChHHHHHHHhCCCcCEEEEeCCcHHHHHHHHhch
Confidence 999999999999999999999999999999 999999999998 578899999999999999999999999998865
Q ss_pred ---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH---------------
Q 005131 501 ---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI--------------- 561 (713)
Q Consensus 501 ---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~--------------- 561 (713)
.+|+++|||||||+||++|||++.| ..+++++++|+||.|+|++|||||+++||+|+++|+
T Consensus 243 a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~d~~ 322 (490)
T 2ve5_A 243 SSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDEN 322 (490)
T ss_dssp HHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hccccceEEEcCCCceeEECCCCCHHHHHHHHHHHHHhcCCCCccCCCeEEEcHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 6999999999999999999999999 567778888999999999999999999999999873
Q ss_pred -------------------HHHHhCCCEE-EcCCc-------cccccC------C-CCCCCccccccCceEEEEEeCCHH
Q 005131 562 -------------------DNLRSEGVTL-YGGPR-------ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVH 607 (713)
Q Consensus 562 -------------------~~~~~~Ga~l-~gg~~-------~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~ 607 (713)
++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+|
T Consensus 323 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPvl~v~~~~~~d 402 (490)
T 2ve5_A 323 TNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDED 402 (490)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESCHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCceEccEEEecCCCCCccccceeeCCeEEEEEeCCHH
Confidence 4567789998 78864 234442 3 789999999999999999999999
Q ss_pred HHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEE
Q 005131 608 AAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 687 (713)
Q Consensus 608 eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~ 687 (713)
|||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||+|.||+|+ ++|++|+++|++.|+
T Consensus 403 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~pfGG~k~SG~G~----~~G~~~~~~f~~~k~ 478 (490)
T 2ve5_A 403 EAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGR----ENGLTTLAHYTRIKS 478 (490)
T ss_dssp HHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEESC----BSHHHHHHTTEEEEE
T ss_pred HHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCCCCCCCCC----cchHHHHHHhheeEE
Confidence 9999999999999999999999999999999999999999987777899999999999999 899999999999999
Q ss_pred EEECCCe
Q 005131 688 ILKGSGQ 694 (713)
Q Consensus 688 v~~~~~~ 694 (713)
|+++.++
T Consensus 479 v~~~~~~ 485 (490)
T 2ve5_A 479 VQVELGD 485 (490)
T ss_dssp EEEECSC
T ss_pred EEEccCc
Confidence 9987763
No 26
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=4.6e-80 Score=695.65 Aligned_cols=400 Identities=18% Similarity=0.178 Sum_probs=356.3
Q ss_pred HHHHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHH
Q 005131 264 ILKVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAA 343 (713)
Q Consensus 264 l~~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~ 343 (713)
+.++.||+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|+..+.+++|++
T Consensus 46 ~~nP~tg~~i~~~~~~~--------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 117 (515)
T 2d4e_A 46 SLDPATNEVLGVAARGG--------EREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQV 117 (515)
T ss_dssp EEETTTTEEEEEEECCC--------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred EECCCCCCEEEEEeCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34678899888887775 9999999999999999999999999999999999999999999998888887776
Q ss_pred HHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHH
Q 005131 344 EQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIA 420 (713)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~ 420 (713)
..++ ..|+..+++.++++++ ..+..++..+.. ..+...+++++|+|||++|+|| ||+.++ +++
T Consensus 118 ~~ea------------~~ev~~~~~~l~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 183 (515)
T 2d4e_A 118 LRIV------------RAQVARAAENFAFYAEYAEHAMEDRTFPV--DRDWLYYTVRVPAGPVGIITPWNAPLMLSTWRI 183 (515)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHTTGGGTTCEEECCB--TTTEEEEEEEEECCCEEEECCSSSHHHHHHHHH
T ss_pred HHHH------------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecCCceEEECCCCchhhhhhhhh
Confidence 6442 1578899999999998 444344432211 2355678899999999999999 999884 999
Q ss_pred HHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCC-chhHHhhhcCCCccEEEecCCHHHHHHHHHh
Q 005131 421 ALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNRLVSQIKES 499 (713)
Q Consensus 421 ~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 499 (713)
+|||++||+||+|||+.+|+++..+++++.++ |+|+|+||+|+|. .++++.|..||+||+|+||||+++|+.|++.
T Consensus 184 ~~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea---GlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~I~~~ 260 (515)
T 2d4e_A 184 APALAFGNTVVLKPAEWSPFTATKLAEILKEA---DLPPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGETETGKIVMRN 260 (515)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHT---TCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHH
T ss_pred hHHHHcCCeeeecCCCCcHHHHHHHHHHHHHh---CCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEeCcHHHHHHHHHH
Confidence 99999999999999999999999999999999 8999999999984 6789999999999999999999999999987
Q ss_pred c---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH--------------
Q 005131 500 T---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI-------------- 561 (713)
Q Consensus 500 ~---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~-------------- 561 (713)
+ +||+++|||||||+||++|||++.| ..+++++++|+||.|+|++|||||+++||+|+++|+
T Consensus 261 aa~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~ 340 (515)
T 2d4e_A 261 AADHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIFEDFVGKVVERARAIRVGHPLDP 340 (515)
T ss_dssp HGGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEHHHHHHHHHHHHHHHHHCCBCCTTST
T ss_pred HhhcCCceEecCCCcCeEEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEehhHHHHHHHHHHHHHhhcccCCcccc
Confidence 5 5999999999999999999999999 567778888999999999999999999999999873
Q ss_pred --------------------HHHHhCCCEE-EcCCc-----------cccccC--C----CCCCCccccccCceEEEEEe
Q 005131 562 --------------------DNLRSEGVTL-YGGPR-----------ASSLLN--I----PEPNSFHHEYNSMACTIEIV 603 (713)
Q Consensus 562 --------------------~~~~~~Ga~l-~gg~~-----------~~~~~~--v----~~~~~~~eE~FgPvl~v~~~ 603 (713)
++++++|+++ +||.. .+.|+. | ++|++++||+||||++|++|
T Consensus 341 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~~~g~~~~PTvl~~~~~~~i~~eEiFGPVl~v~~~ 420 (515)
T 2d4e_A 341 ETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVGENHMKIAQEEIFGPVLVAIPF 420 (515)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCBCTTSCBCTTTTCBCCEEEECCTTSHHHHSCCCSSEEEEEEE
T ss_pred cCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCccccccccccccCCCceeCCEEEeCCCCChhhhccccCCceEEEee
Confidence 4566789998 88864 234443 2 57889999999999999999
Q ss_pred CCHHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhce
Q 005131 604 DDVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLL 683 (713)
Q Consensus 604 ~~~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~ 683 (713)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||+|+||+|+ ++|++|+++|+
T Consensus 421 ~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~~~ 496 (515)
T 2d4e_A 421 KDEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGMVYLNSHNVRHLPTPFGGVKGSGDRR----EGGTYALDFYT 496 (515)
T ss_dssp SSHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESSSCCCCTTSCBCCSGGGBCSC----BSHHHHHHHHE
T ss_pred CCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCcCCCCCCc----cchHHHHHHhC
Confidence 99999999999999999999999999999999999999999999987777899999999999998 89999999999
Q ss_pred eEEEEEECC
Q 005131 684 TTRWILKGS 692 (713)
Q Consensus 684 ~~k~v~~~~ 692 (713)
++|+|+++.
T Consensus 497 ~~K~v~~~~ 505 (515)
T 2d4e_A 497 DLKTIALPL 505 (515)
T ss_dssp EEEEEEEES
T ss_pred ceeEEEEcC
Confidence 999999864
No 27
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=100.00 E-value=5.3e-80 Score=692.85 Aligned_cols=400 Identities=16% Similarity=0.142 Sum_probs=354.3
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSR-RLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAE 344 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~-~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~ 344 (713)
++.+|+.++++...+ .+|+++|+++|++||+ .|+++|+++|.++|++++++|++|+++|+..+.+++|++.
T Consensus 38 nP~tg~~i~~~~~~~--------~~~v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 109 (501)
T 1uxt_A 38 SPIDLATIAKVISPS--------REEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPK 109 (501)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHTHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred CCCCCCEEEEEeCCC--------HHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 356889999887775 9999999999999999 9999999999999999999999999999988777777765
Q ss_pred HhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccC--CceeeeeeccceeEEEEecC-CchHHH-HH
Q 005131 345 QEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLAD--GLFLEKTSCPLGVLLIVFES-RPDALV-QI 419 (713)
Q Consensus 345 ~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~--~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~ 419 (713)
.++ ..|+..+++.+++++. ..+..++..+...... +...++.++|+|||++|+|| ||+.++ ++
T Consensus 110 ~ea------------~~Ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~ 177 (501)
T 1uxt_A 110 SAA------------VGEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFDAVNK 177 (501)
T ss_dssp HHH------------HHHHHHHHHHHHTGGGGGGGTCCEEEESTTSSTTTTEEEEEEEEECSEEEEECCTTSTTHHHHHH
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCcCceEEEEEeeccEEEEECCCccHHHHHHHH
Confidence 442 1578899999999987 4333343322110012 34678999999999999999 999885 99
Q ss_pred HHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHHh
Q 005131 420 AALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKES 499 (713)
Q Consensus 420 ~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 499 (713)
++|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+|..++++.|..||+||+|+||||+++|+.|++.
T Consensus 178 ~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea---GlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~G~~i~~~ 254 (501)
T 1uxt_A 178 ITYSFIYGNAVVVKPSISDPLPAAMAVKALLDA---GFPPDAIALLNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVKV 254 (501)
T ss_dssp HHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHT---TCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEeCCCCchHHHHHHHHHHHHh---CCCcCeEEEEeCCcHHHHHHHhCCCcCEEEEeCcHHHHHHHHHh
Confidence 999999999999999999999999999999999 89999999999744789999999999999999999999999987
Q ss_pred c-CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH----------------
Q 005131 500 T-KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI---------------- 561 (713)
Q Consensus 500 ~-~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~---------------- 561 (713)
+ .||+++|||||||+||++|||++.| ..+++++++|+||.|+|++|+|||+++||+|+++|+
T Consensus 255 aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~ 334 (501)
T 1uxt_A 255 GGVKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGKLVEEVAKRLSSLRVGDPRDPTV 334 (501)
T ss_dssp HCSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHHHHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred cCCCeEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhcCCCCCCcCCcEEEeccchHHHHHHHHHHHHHhccCCCccccCC
Confidence 6 5999999999999999999999999 567778888999999999999999999999999873
Q ss_pred ------------------HHHHhCCCEE-EcCCccc-cccC------C----CCCCCccccccCceEEEEEeCCHHHHHH
Q 005131 562 ------------------DNLRSEGVTL-YGGPRAS-SLLN------I----PEPNSFHHEYNSMACTIEIVDDVHAAIG 611 (713)
Q Consensus 562 ------------------~~~~~~Ga~l-~gg~~~~-~~~~------v----~~~~~~~eE~FgPvl~v~~~~~~~eAi~ 611 (713)
++++++|+++ +||...+ .|+. + ++|++++||+||||++|++|+|+||||+
T Consensus 335 ~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~g~~~~~Ptvl~~v~~~~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 414 (501)
T 1uxt_A 335 DVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQAIE 414 (501)
T ss_dssp SBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCBCSSSCBCCEEEECCHHHHTTSHHHHSCCCSSEEEEEEESSHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCceECCEEEeCCCCCCCcCHHHhCcccCceEEEEeeCCHHHHHH
Confidence 4556689998 8886545 5542 3 5678999999999999999999999999
Q ss_pred HHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCC-CCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEEE
Q 005131 612 HIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNAS-TRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILK 690 (713)
Q Consensus 612 ~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~-~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~ 690 (713)
++|+++|||++||||+|.++++++++++++|+|+||++ +...+.+||||+|+||+|+ ++|++|+++||+.|+|++
T Consensus 415 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~~PfGG~k~SG~G~----~~G~~~l~~f~~~k~v~~ 490 (501)
T 1uxt_A 415 LANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVFR----EGIGYAVEAVTAYKTIVF 490 (501)
T ss_dssp HHHTSSEESEEEEECCCHHHHHHHHHHCCSSEEEETSCCCCTTSSSCBCCEETTEESC----BSTTTTHHHHEEEEEEEE
T ss_pred HHhcCCCCcEEEEeCCCHHHHHHHHHhCCEeeEEEeCCCCCCCCCCCCCCcCCCCCCc----cChHHHHHHhCceeEEEE
Confidence 99999999999999999999999999999999999998 6667899999999999998 899999999999999998
Q ss_pred CC
Q 005131 691 GS 692 (713)
Q Consensus 691 ~~ 692 (713)
+.
T Consensus 491 ~~ 492 (501)
T 1uxt_A 491 NY 492 (501)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 28
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=100.00 E-value=1.5e-79 Score=677.13 Aligned_cols=408 Identities=33% Similarity=0.600 Sum_probs=363.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHHhcCchhhHhHhhcCHHHHHHHHH
Q 005131 289 EVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQEGYEKPLLSRLALKSGKISSLAN 368 (713)
Q Consensus 289 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ev~~~~~ 368 (713)
-+++++++++|++||+.|+++|+++|.++|++++++|++|+++|+..+.+++++++..|+.++..+++.....|+..+++
T Consensus 13 ~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~~~~ 92 (427)
T 1o20_A 13 MDELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIK 92 (427)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999998666666777888888899999999
Q ss_pred HHHHHhcccCccccccccccccCCceeeeeeccceeEEEEecCCchHHHHHHHHHHHhCCEEEEeCCCCchHHHHHHHHH
Q 005131 369 SVRVLANMEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFESRPDALVQIAALAIRSGNGLLLKGGKEAKRSNAILHKI 448 (713)
Q Consensus 369 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~~P~~~~~~~~~ALaaGN~vv~Kps~~~~~~~~~l~~~ 448 (713)
.+++|+...+..+...+....+.+...+++++|+|||++|+||.|....++++|||++||+||+|||+.+|+++.+++++
T Consensus 93 ~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~p~~~~~~~~~~ALaaGNtVVlKps~~tp~t~~~l~~l 172 (427)
T 1o20_A 93 ACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSA 172 (427)
T ss_dssp HHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHHhcccccCccccccccCCCceeEEEeecceeEEEEecCChHHHHHHHHHHHHcCCEEEEECCHhHHHHHHHHHHH
Confidence 99999974333444332211123556788999999999999995544469999999999999999999999999999999
Q ss_pred HHHhc-cccCCCCeEEEecC-C-chhHHhhhcCCCccEEEecCCHHHHHHHHHhcCCCeEEecCccceEEEcCCCCHHHH
Q 005131 449 ITEVI-PENVGERLIGLVTS-R-EEIPDLLKLDDVIDLVIPRGSNRLVSQIKESTKIPVLGHADGICHIYVDKSADMDMA 525 (713)
Q Consensus 449 ~~~al-~~glP~g~v~vv~g-~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~~~~v~lElgG~~p~iV~~dADl~~A 525 (713)
+.++| ..|+|+|++|+|+| + ++++++|..||+||+|+||||+++|+.|++++.||+++|||||||+||++|||++.|
T Consensus 173 ~~~al~eaGlP~gvv~vv~g~~~~~~~~~L~~~~~v~~I~fTGS~~~G~~i~~~a~~~v~lELGGk~p~iV~~dADl~~A 252 (427)
T 1o20_A 173 IREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKKA 252 (427)
T ss_dssp HHHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHHH
T ss_pred HHHHHHHcCCCcccEEEecCCChHHHHHHHhCCCCccEEEeCCChHHHHHHHHhcCCCEEEecCCCceEEEeCCCCHHHH
Confidence 99886 44799999999997 4 567899999999999999999999999999989999999999999999999999999
Q ss_pred -HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHHHHHhCCCEEEcCCccccccC-C--CCCCCccccccCceEEEE
Q 005131 526 -KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDNLRSEGVTLYGGPRASSLLN-I--PEPNSFHHEYNSMACTIE 601 (713)
Q Consensus 526 -~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~~~~~~Ga~l~gg~~~~~~~~-v--~~~~~~~eE~FgPvl~v~ 601 (713)
..+++++|+|+| .|+|++|+|||+++||+|+++|++.+.+.+..+.||.+...|++ + ++|++++||+||||++|+
T Consensus 253 a~~i~~~~f~n~G-~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~~~~gg~~~~~~~Ptl~~~~~~i~~eEiFGPVl~v~ 331 (427)
T 1o20_A 253 VPVIINAKTQRPG-TCNAAEKLLVHEKIAKEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIAIK 331 (427)
T ss_dssp HHHHHHHHHSCTT-STTSEEEEEEEHHHHHHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEEEE
T ss_pred HHHHHHHhccCCC-CCCCccEEEEehhhHHHHHHHHHHHHHHcCCeeecChhhhhhCCcccCCCcchhhcccccceEEEE
Confidence 566777788888 99999999999999999999999999888888888764323444 3 678999999999999999
Q ss_pred EeCCHHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhh
Q 005131 602 IVDDVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEG 681 (713)
Q Consensus 602 ~~~~~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~ 681 (713)
+|+|+||||+++|+++|||++||||+|.+++.++++++++|+|+||+++...+.+||||+|+||+|.+++|++|++|+++
T Consensus 332 ~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~pfGg~~~SG~g~~~~~~~g~~gl~~ 411 (427)
T 1o20_A 332 VVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRE 411 (427)
T ss_dssp EESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTTCSCCSCEECSSSSCCEECCTGG
T ss_pred EECCHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHhCCccEEEECCCCccCCCCCCCCcccccccCCcccCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999876778899999999999976777889999999
Q ss_pred ceeEEEEEECCCeeec
Q 005131 682 LLTTRWILKGSGQVVD 697 (713)
Q Consensus 682 ~~~~k~v~~~~~~~~~ 697 (713)
|+++|+|+++.+++|+
T Consensus 412 ~~~~k~v~~~~~~~~~ 427 (427)
T 1o20_A 412 LTTYKFVVLGEYHVRE 427 (427)
T ss_dssp GEEEEEEEECSSCCCC
T ss_pred HhceEEEEECCCccCC
Confidence 9999999999988773
No 29
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=100.00 E-value=6.9e-80 Score=693.74 Aligned_cols=411 Identities=19% Similarity=0.190 Sum_probs=341.1
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+..+.+++|++..
T Consensus 34 ~P~tg~~~~~~~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 105 (508)
T 3r64_A 34 NPYDDSVIAESKQAS--------IADVDAAYEAAKKAQAEWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTRS 105 (508)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCCHH
T ss_pred CCCCCCEEEEECCCC--------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHH
Confidence 356889999887765 999999999999999999999999999999999999999999999887777776654
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
++ ..|+..+++.+++++. .....+ ..+.. ...+...+++++|+|||++|+|| ||+.+. +++++
T Consensus 106 ~a------------~~Ev~~~~~~~~~~a~~~~~~~~-~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 171 (508)
T 3r64_A 106 KA------------NLEITLAGNITKESASFPGRVHG-RISPS-NTPGKENRVYRVAKGVVGVISPWNFPLNLSIRSVAP 171 (508)
T ss_dssp HH------------HHHHHHHHHHHHHHTTSTTTCCE-EEECC-SSTTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHhhhhcC-ccccc-CCCCceeEEEEecceEEEEECCCcchHHHHHHHHHH
Confidence 42 1588999999999998 333333 32221 12356788999999999999999 999985 99999
Q ss_pred HHHhCCEEEEeCCCCchHHH-HHHHHHHHHhccccCCCCeEEEecCC-chhHHhhhcCCCccEEEecCCHHHHHHHHHhc
Q 005131 423 AIRSGNGLLLKGGKEAKRSN-AILHKIITEVIPENVGERLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~-~~l~~~~~~al~~glP~g~v~vv~g~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~ 500 (713)
||++||+||+|||+.+|+++ .++++++.++ |+|+|+||+|+|. .++++.|..||+||+|+||||+++|+.|++.+
T Consensus 172 ALaaGN~VVlKps~~tp~t~~~~l~~ll~~a---GlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~a 248 (508)
T 3r64_A 172 ALAVGNAVVIKPASDTPVTGGVIPARIFEEA---GVPAGVISTVAGAGSEIGDHFVTHAVPKLISFTGSTPVGRRVGELA 248 (508)
T ss_dssp HHHTTCEEEEECCTTCHHHHTHHHHHHHHTT---TCCTTTEEECCCCTTTTHHHHHHCSSCSEEEEESCHHHHHHHHHHH
T ss_pred HHhcCCEEEEECCCCChHHHHHHHHHHHHHh---CcCcCeEEEEeCCCHHHHHHHhhCCCccEEEEECCHHHHHHHHHHh
Confidence 99999999999999999999 9999999999 8999999999984 77888888899999999999999999998854
Q ss_pred -----CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH-------------
Q 005131 501 -----KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI------------- 561 (713)
Q Consensus 501 -----~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~------------- 561 (713)
.||+++|||||||+||++|||++.| ..+++++++|+||.|+|++|||||+++||+|+++|+
T Consensus 249 a~~~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~ 328 (508)
T 3r64_A 249 INGGPMKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVHDEFLEKFVEAVKNIPTGDPSA 328 (508)
T ss_dssp HSSSSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTSTTCTTTCCSEEEEEHHHHHHHHHHHHHHHHTCCBSCTTS
T ss_pred hcccCCCceEeecCCcCceEECCCCCHHHHHHHHHHHHHhcCCCCcccCcEEEEehhHHHHHHHHHHHHHHhccCCCCcc
Confidence 5999999999999999999999999 568888899999999999999999999999999873
Q ss_pred ---------------------HHHHhCCCEE-EcCCccccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHH
Q 005131 562 ---------------------DNLRSEGVTL-YGGPRASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGH 612 (713)
Q Consensus 562 ---------------------~~~~~~Ga~l-~gg~~~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~ 612 (713)
++++++|+++ +||...+.|+. + ++|++++||+||||++|++|+|+||||++
T Consensus 329 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 408 (508)
T 3r64_A 329 EGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPIEGRLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAEL 408 (508)
T ss_dssp SSCCBCCCSCHHHHHHHHHHHHHHHTTTCEEEECCCEETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEESSHHHHHHH
T ss_pred CCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEecCCCCCcEEecEEEecCCCCChhhcccccCceEEEEEeCCHHHHHHH
Confidence 4566789998 88876555542 3 78999999999999999999999999999
Q ss_pred HHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCC-CCCCCccCccceeeccccCCCcccchHhhceeEEEEEEC
Q 005131 613 IHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKG 691 (713)
Q Consensus 613 ~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~ 691 (713)
+|+++|||++||||+|.+++.++++++++|+|+||+++.. .+.+||||+|.||+|+ ++|++|+++||+.|+|+++
T Consensus 409 aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~~~SG~Gr----~~G~~~l~~ft~~k~v~~~ 484 (508)
T 3r64_A 409 ANASDFGLSAAVWSKDIDRAAQFALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLGR----FNGDWAIEEFTTDRWIGIK 484 (508)
T ss_dssp HTSSSCCSCEEEECSCHHHHHHHHTTSCSSEEEECC--------------------C----CCHHHHHHHTEEEEEEEEE
T ss_pred HhCCCCCcEEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCcCCcCCCCCCc----CccHHHHHHhhceEEEEEe
Confidence 9999999999999999999999999999999999998643 6889999999999999 8899999999999999987
Q ss_pred CCeeec-------CCCCcccc
Q 005131 692 SGQVVD-------GDKGVEYI 705 (713)
Q Consensus 692 ~~~~~~-------~~~~~~~~ 705 (713)
.+..+. +..+.||-
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~ 505 (508)
T 3r64_A 485 RSAENLYFQSHHHHHHWSHPQ 505 (508)
T ss_dssp CCSTTCCCC------------
T ss_pred cccchhcchhhccCccccCCc
Confidence 654332 55555553
No 30
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=100.00 E-value=6.6e-80 Score=690.75 Aligned_cols=394 Identities=18% Similarity=0.167 Sum_probs=345.3
Q ss_pred HHHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHH
Q 005131 265 LKVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAE 344 (713)
Q Consensus 265 ~~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~ 344 (713)
.++.||+.++++...+ .+|+++|+++|++||+.|+++++++|.++|++++++|+++.++|+..+.+++|++.
T Consensus 46 ~nP~tg~~i~~v~~~~--------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 117 (497)
T 3i44_A 46 IDPSTEEACAVISLGS--------TRDADKAINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPI 117 (497)
T ss_dssp EETTTTEEEEEEECCC--------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 4577889889887765 99999999999999999999999999999999999999999999987777777665
Q ss_pred HhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeee-eccceeEEEEecC-CchHHH-HHH
Q 005131 345 QEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKT-SCPLGVLLIVFES-RPDALV-QIA 420 (713)
Q Consensus 345 ~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~-~~P~GVv~~I~p~-~P~~~~-~~~ 420 (713)
.++. ..|+..+++.+++++. ......... ...+...+++ ++|+|||++|+|| ||+.++ +++
T Consensus 118 ~~a~-----------~~ev~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 182 (497)
T 3i44_A 118 DMAL-----------NAQTATGSSHIRNFIKAYKEFSFQEA----LIEGNEQAILHYDAIGVVGLITPWNWPMNQVTLKV 182 (497)
T ss_dssp HHHH-----------HTHHHHHHHHHHHHHHHHHHCCSEEE----SSTTCSSCEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHhhccccccc----ccCCceeEEEeecCceEEEEECCCcchHHHHHHHH
Confidence 4410 1477888888888876 222111111 1124446677 9999999999999 999985 999
Q ss_pred HHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHh
Q 005131 421 ALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKES 499 (713)
Q Consensus 421 ~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 499 (713)
+|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.
T Consensus 183 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea---GlP~gvvnvv~g~~~~~g~~L~~hp~v~~I~FTGS~~~G~~i~~~ 259 (497)
T 3i44_A 183 IPALLAGCTMVLKPSEIAPLSAMLFAEILDEA---ALPSGVFNLINGDGANVGSYLSAHPDLEMISFTGSTRAGKDISKN 259 (497)
T ss_dssp HHHHHHTCEEEEECCTTSCHHHHHHHHHHHHT---TCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCcccHHHHHHHHHHHHHh---CcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEeCcHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999998 56889999999999999999999999999987
Q ss_pred c---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH--------------
Q 005131 500 T---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI-------------- 561 (713)
Q Consensus 500 ~---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~-------------- 561 (713)
+ .||+++|||||||+||++||| +.| ..+++++|+|+||.|++++|||||+++||+|+++|+
T Consensus 260 aa~~~k~v~lElGGk~p~IV~~dAD-~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~vG~p~~~ 338 (497)
T 3i44_A 260 ASNTLKRVCLELGGKGANIIFADAD-IDALQRGVRHCFYNSGQSCNAPTRMLVEQAIYDKAIKTAKDIAEKTQVGPGHQT 338 (497)
T ss_dssp HHTTTCEEEEECCCCCEEEECTTSC-TTHHHHHHHHHHGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHHCCBCCTTSC
T ss_pred HhhcCCceeeccCCCCceEECCChh-HHHHHHHHHHHHhcCCCCcccCCEEEEcHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 5 599999999999999999999 999 567778888999999999999999999999999873
Q ss_pred --------------------HHHHhCCCEE-EcCC-c-----cccccC------C-CCCCCccccccCceEEEEEeCCHH
Q 005131 562 --------------------DNLRSEGVTL-YGGP-R-----ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVH 607 (713)
Q Consensus 562 --------------------~~~~~~Ga~l-~gg~-~-----~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~ 607 (713)
++++++|+++ +||. . .+.|+. + ++|++++||+||||++|++|+|+|
T Consensus 339 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 418 (497)
T 3i44_A 339 GNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTED 418 (497)
T ss_dssp SSCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCcCCCCcEECCEEEEeCCCCCHHHcCcccCceEEEEecCCHH
Confidence 4567789999 7873 2 244542 3 789999999999999999999999
Q ss_pred HHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEE
Q 005131 608 AAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 687 (713)
Q Consensus 608 eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~ 687 (713)
|||+++|+++|||++||||+|.+++.++++++++|+||||. ....+.+||||+|.||+|+ ++|++|+++||+.|+
T Consensus 419 eAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~-~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~~t~~K~ 493 (497)
T 3i44_A 419 EAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVEVNG-HELPGGSYFGGVKFSGRAR----EGGLWGIKEFLDTKA 493 (497)
T ss_dssp HHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEETT-CCCCTTCCBCCSGGGCCCC----BSHHHHHHTTEEEEE
T ss_pred HHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcCeEEECC-CCCCCCCCcCCcCcCcCCc----cchHHHHHHhcceeE
Confidence 99999999999999999999999999999999999999994 5556789999999999998 899999999999999
Q ss_pred EEE
Q 005131 688 ILK 690 (713)
Q Consensus 688 v~~ 690 (713)
|+.
T Consensus 494 v~~ 496 (497)
T 3i44_A 494 ISY 496 (497)
T ss_dssp ESC
T ss_pred EEe
Confidence 864
No 31
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=100.00 E-value=1.2e-79 Score=687.60 Aligned_cols=397 Identities=19% Similarity=0.193 Sum_probs=354.8
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|+..+.+++|++..
T Consensus 24 ~P~tg~~i~~~~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 95 (475)
T 1euh_A 24 EPASGAELGSVPAMS--------TEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYK 95 (475)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHH
T ss_pred CCCCCCEEEEEeCCC--------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH
Confidence 467899999887775 999999999999999999999999999999999999999999999888888887664
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCC----cee-eeeeccceeEEEEecC-CchHHH-
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADG----LFL-EKTSCPLGVLLIVFES-RPDALV- 417 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~----~~~-~~~~~P~GVv~~I~p~-~P~~~~- 417 (713)
++ ..|+..+++.+++++. ..+..++..+.. ..+ ... ++.++|+|||++|+|| ||+.++
T Consensus 96 ea------------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~ 161 (475)
T 1euh_A 96 SA------------VSEVVRTAEIINYAAEEGLRMEGEVLEGG--SFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAG 161 (475)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHHTTCCEEEEEGG--GTCGGGTTEEEEEEEEECSEEEEECCTTSTTHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCccccceeeEEEEeccceEEEECCCCchHHHHH
Confidence 41 2689999999999987 444444432221 124 456 8899999999999999 999885
Q ss_pred HHHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCC-chhHHhhhcCCCccEEEecCCHHHHHHH
Q 005131 418 QIAALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNRLVSQI 496 (713)
Q Consensus 418 ~~~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i 496 (713)
++++|||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+|. +++++.|..||+||+|+||||+++|+.|
T Consensus 162 ~~~~~ALaaGN~vVlKps~~tp~t~~~l~~ll~~a---GlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i 238 (475)
T 1euh_A 162 SKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEA---GLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERI 238 (475)
T ss_dssp HHHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHHH---TCCTTTEEECCCCHHHHHHHHHHCTTCCEEEEESCHHHHHHH
T ss_pred HHHHHHHHcCCEEEEeCCCcChHHHHHHHHHHHHh---CCCcCeEEEEeCCcHHHHHHHHhCCCcCEEEEECchHHHHHH
Confidence 99999999999999999999999999999999999 8999999999985 6688999999999999999999999999
Q ss_pred HHhc-CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH-------------
Q 005131 497 KEST-KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI------------- 561 (713)
Q Consensus 497 ~~~~-~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~------------- 561 (713)
++.+ ++|+++|||||||+||++|||++.| ..+++++++|+||.|+|++|+|||+++||+|+++|+
T Consensus 239 ~~~aa~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~ 318 (475)
T 1euh_A 239 GKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPED 318 (475)
T ss_dssp HHHTTTSCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHHHHHHHHHHHHHHTSCBSCGGG
T ss_pred HHhcCCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCCCCcEEEEehhHHHHHHHHHHHHHHhccCCCccc
Confidence 9987 6999999999999999999999999 667788889999999999999999999999999884
Q ss_pred --------------------HHHHhCCCEE-EcCCccccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHHH
Q 005131 562 --------------------DNLRSEGVTL-YGGPRASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGHI 613 (713)
Q Consensus 562 --------------------~~~~~~Ga~l-~gg~~~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~~ 613 (713)
++++++|+++ +||...+.|+. + ++|++++||+||||++|++|+|+||||+++
T Consensus 319 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~eai~~a 398 (475)
T 1euh_A 319 DADITPLIDTKSADYVEGLINDANDKGATALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEIS 398 (475)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCCEETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESCHHHHHHHH
T ss_pred cCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCceeCCEEEeCCCCcCHHHcCccccceEEEEecCCHHHHHHHH
Confidence 3455679998 78765455542 4 788999999999999999999999999999
Q ss_pred HccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcC-CCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEEEC
Q 005131 614 HQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNA-STRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKG 691 (713)
Q Consensus 614 N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~-~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~ 691 (713)
|+++|||++||||+|.++++++++++++|+|+||+ ++...+.+||||+|+||+|+ ++|++|+++|++.|+|+++
T Consensus 399 n~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~k~SG~G~----~~g~~~~~~~~~~k~v~~~ 473 (475)
T 1euh_A 399 NKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGI----QGVKYSIEAMTTVKSVVFD 473 (475)
T ss_dssp HHSSEESEEEEECSCHHHHHHHHHHSCSSEEEESSCCCCCSTTSCBCCEETTEESC----BSHHHHHHHTEEEEEEEEE
T ss_pred hCCCCCeeEEEEeCCHHHHHHHHHhCCEeeEEECCCCCCCCCCCCcCCCCCCCcCC----CccHHHHHHhCCeeEEEEe
Confidence 99999999999999999999999999999999999 76667899999999999998 8999999999999999874
No 32
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=100.00 E-value=2.1e-79 Score=686.30 Aligned_cols=397 Identities=16% Similarity=0.197 Sum_probs=353.9
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.||+.++++...+ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|+..+.+++|++..
T Consensus 32 ~P~tg~~~~~~~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 103 (487)
T 2w8n_A 32 DPASGAALGMVADCG--------VREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLK 103 (487)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEEeCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 466899999887775 999999999999999999999999999999999999999999999888888877764
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
++ ..|+..+++.+++++. ..+..++..+.. ..+...+++++|+|||++|+|| ||+.+. ++++|
T Consensus 104 ea------------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 169 (487)
T 2w8n_A 104 EA------------HGEILYSAFFLEWFSEEARRVYGDIIHTP--AKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGA 169 (487)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHGGGCCCEEECCS--CTTCEEEEEEEECCEEEEECCSSSTTHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecceEEEEECCCcchHHHHHHHHHH
Confidence 42 1578899999999987 444444432221 2355778899999999999999 999885 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEec---C-CchhHHhhhcCCCccEEEecCCHHHHHHHHH
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVT---S-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKE 498 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~---g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 498 (713)
||++||+||+|||+.+|+++..+++++.++ |+|+|+||+|+ | +.++++.|..||+||+|+||||+++|+.|++
T Consensus 170 ALaaGN~VVlKps~~tp~t~~~l~~l~~~a---GlP~gvv~vv~~~~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~ 246 (487)
T 2w8n_A 170 ALAAGCTVVVKPAEDTPFSALALAELASQA---GIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLH 246 (487)
T ss_dssp HHHHTCEEEEECCTTCCHHHHHHHHHHHHH---TCCTTSEEECCCCHHHHHHHHHHHTTCTTEEEEEEEECHHHHHHHHH
T ss_pred HHHcCCEEEEECCCcchHHHHHHHHHHHHh---CCCCCeEEEEecCCCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHH
Confidence 999999999999999999999999999999 89999999999 8 4678899999999999999999999999998
Q ss_pred hc---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHHH-----------
Q 005131 499 ST---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDN----------- 563 (713)
Q Consensus 499 ~~---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~~----------- 563 (713)
.+ .+|+++|||||||+||++|||++.| ..+++++|+|+||.|++++|+|||+++||+|+++|++.
T Consensus 247 ~aa~~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~~G~p~ 326 (487)
T 2w8n_A 247 HAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNLRVGNGF 326 (487)
T ss_dssp HHHTTTCEEEEEECEEEEEEECTTSCHHHHHHHHHHHHTCCCSCCCSEEEEEEEEHHHHHHHHHHHHHHHHHHCCBSCTT
T ss_pred HHhccCCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCccccCCEEEEcccHHHHHHHHHHHHHHhhcccCCcc
Confidence 75 6999999999999999999999999 56777888899999999999999999999999987533
Q ss_pred ------------------------HHhCCCEE-EcCCcc--cc-ccC------C-CCCCCccccccCceEEEEEeCCHHH
Q 005131 564 ------------------------LRSEGVTL-YGGPRA--SS-LLN------I-PEPNSFHHEYNSMACTIEIVDDVHA 608 (713)
Q Consensus 564 ------------------------~~~~Ga~l-~gg~~~--~~-~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~e 608 (713)
++++|+++ +||... +. |+. + ++|++++||+||||++|++|+|+||
T Consensus 327 ~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gg~~~~~g~~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~~e 406 (487)
T 2w8n_A 327 EEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEE 406 (487)
T ss_dssp STTCCBCCCSSHHHHHHHHHHHHHHHTTTCEEEECCSBCTTCTTCBCCEEEEEECGGGGTTCTTCCSSEEEEEEESCHHH
T ss_pred cccCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCceECCEEEecCCCcchhhhcccccceEEEEEeCCHHH
Confidence 34468998 788653 44 553 3 6899999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEE
Q 005131 609 AIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 688 (713)
Q Consensus 609 Ai~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v 688 (713)
||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||+|.||+|+ ++|++|+++||+.|+|
T Consensus 407 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~~~SG~G~----~~G~~~l~~f~~~k~v 482 (487)
T 2w8n_A 407 AIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGR----EGSKYGIDEYLELKYV 482 (487)
T ss_dssp HHHHHTCTTCCSEEEEECCCHHHHHHHHHHSCSSEEEESCSCCCCTTSCBCCSGGGEESC----BSTTTGGGGGEEEEEE
T ss_pred HHHHHhCCCCCceEEEeCCCHHHHHHHHHhCCeeeEEEcCCCCCCCCCCCCCCCCCCcCC----CchHHHHHHhcCccEE
Confidence 999999999999999999999999999999999999999987667789999999999998 8999999999999999
Q ss_pred EEC
Q 005131 689 LKG 691 (713)
Q Consensus 689 ~~~ 691 (713)
+++
T Consensus 483 ~~~ 485 (487)
T 2w8n_A 483 CYG 485 (487)
T ss_dssp EEC
T ss_pred EEe
Confidence 874
No 33
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=100.00 E-value=2.9e-79 Score=687.34 Aligned_cols=400 Identities=19% Similarity=0.201 Sum_probs=351.5
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.||+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+....+++|++..
T Consensus 43 nP~tg~~i~~~~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 114 (500)
T 2j6l_A 43 CPANNEPIARVRQAS--------VADYEETVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILV 114 (500)
T ss_dssp ETTTTEEEEEEECCC--------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCHH
T ss_pred CCCCCCEEEEEeCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 467888888877764 999999999999999999999999999999999999999999999777777766653
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHH-HHHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDAL-VQIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~-~~~~~~ 422 (713)
++ ..|+..+++.+++++. ..+..+...+.. ..+...+++++|+|||++|+|| ||+.+ .++++|
T Consensus 115 ea------------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 180 (500)
T 2j6l_A 115 EG------------VGEVQEYVDICDYAVGLSRMIGGPILPSE--RSGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAI 180 (500)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHTTTCCCBEECCS--STTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhcCcccccc--CCCceeEEEEecccEEEEECCCcchhhHHHHHHHH
Confidence 31 1678889999999887 444444332211 1344567889999999999999 99988 599999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccc-cCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHHhc-
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPE-NVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~-glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~- 500 (713)
||++||+||+|||+.+|+++.++++++.++|.+ |+|+|+||+|+|+.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 181 ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~g~~i~~~aa 260 (500)
T 2j6l_A 181 AMICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCGGADIGTAMAKDERVNLLSFTGSTQVGKQVGLMVQ 260 (500)
T ss_dssp HHHTTCEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCGGGEEEECCSHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEECCCccHHHHHHHHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHhcCCCcCEEEEECCHHHHHHHHHHhc
Confidence 999999999999999999999999999987554 699999999999767899999999999999999999999999865
Q ss_pred --CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH----------------
Q 005131 501 --KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI---------------- 561 (713)
Q Consensus 501 --~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~---------------- 561 (713)
.+|+++|||||||+||++|||++.| ..+++++++|+||.|+|++|+|||+++||+|+++|+
T Consensus 261 ~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~ 340 (500)
T 2j6l_A 261 ERFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIHDEVVNRLKKAYAQIRVGNPWDPNV 340 (500)
T ss_dssp HTTCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEETTTHHHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred cCCCceEEEcCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCcCCCcEEEEcHHHHHHHHHHHHHHhhhcccCCcccCCC
Confidence 6999999999999999999999999 667788888999999999999999999999999873
Q ss_pred ------------------HHHHhCCCEE-EcCCc---cccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHH
Q 005131 562 ------------------DNLRSEGVTL-YGGPR---ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGH 612 (713)
Q Consensus 562 ------------------~~~~~~Ga~l-~gg~~---~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~ 612 (713)
++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||||++
T Consensus 341 ~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 420 (500)
T 2j6l_A 341 LYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFAW 420 (500)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSSCBCCEEEESCCTTCHHHHSCCSSSEEEEEEECCHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCCEEcCEEEECCCCcChhhcCcccCceEEEEeeCCHHHHHHH
Confidence 4566789998 88864 244542 4 68999999999999999999999999999
Q ss_pred HHccCCCceeEEEcCCHHHHHHHH--hccCeeeEEEcCCCC-CCCCCCccCccceeeccccCCCcccchHhhceeEEEEE
Q 005131 613 IHQHGSGHTDCIITNDSEAAEIFL--RQVDSAAVFHNASTR-FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 689 (713)
Q Consensus 613 ~N~~~~gL~a~v~t~d~~~a~~~~--~~l~~G~v~iN~~~~-~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~ 689 (713)
+|+++|||++||||+|.+++++++ +++++|+|+||+++. ..+.+||||+|.||+|+ ++|.+|+++|++.|+|+
T Consensus 421 aN~~~~gL~a~v~t~d~~~a~~~~~~~~~~~G~V~vN~~~~~~~~~~PfGG~k~SG~G~----~~g~~~~~~f~~~k~v~ 496 (500)
T 2j6l_A 421 NNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGGR----ESGSDAWKQYMRRSTCT 496 (500)
T ss_dssp HHTSSCCSEEEEECCCHHHHHHHHSTTSCCSSEEEESSCTTCCCTTSEECCSGGGCSCC----EESTTGGGGGEEEEEEE
T ss_pred HhCCCCCcEEEEECCCHHHHHHHHhhccCCeeEEEECCCCccCCCCCCcCCcCCCCCCC----cchHHHHHHhhceEEEE
Confidence 999999999999999999999999 779999999998754 34789999999999999 88999999999999998
Q ss_pred EC
Q 005131 690 KG 691 (713)
Q Consensus 690 ~~ 691 (713)
++
T Consensus 497 ~~ 498 (500)
T 2j6l_A 497 IN 498 (500)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 34
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=100.00 E-value=1.6e-79 Score=685.15 Aligned_cols=396 Identities=18% Similarity=0.227 Sum_probs=350.8
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++... +.+|+++++++|++||+.|++++.++|.++|++++++|++++++|+....+++|++..
T Consensus 13 ~P~t~~~i~~~~~~--------~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 84 (462)
T 3etf_A 13 NPATGQTLAAMPWA--------NAQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIK 84 (462)
T ss_dssp CTTTCCEEEECCCC--------CHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEecCC--------CHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 35688888887665 4999999999999999999999999999999999999999999999877777776654
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
+. ..|+..+++.+++++. .....+.. +. ...+...+++++|+|||++|+|| ||+.+. ++++|
T Consensus 85 ~a------------~~ev~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 149 (462)
T 3etf_A 85 QA------------RAEVTKSAALCDWYAEHGPAMLNPE-PT--LVENQQAVIEYRPLGVILAIMPWNFPLWQVLRGAVP 149 (462)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHHHHHTSCE-EC--SSGGGCEEEEEEECSEEEEECCSSSTTHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHhHHHhcCCc-cc--CCCCceeEEEeecCcEEEEECCCchHHHHHHHHHHH
Confidence 31 1578888899998886 33222222 11 11345678899999999999999 999985 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHHhc--
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST-- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~-- 500 (713)
||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+|+.+.++.|..||+||+|+||||+++|+.|++.+
T Consensus 150 ALaaGN~VvlKps~~tp~~~~~l~~~l~~a---glP~gv~~vv~g~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~aa~ 226 (462)
T 3etf_A 150 ILLAGNSYLLKHAPNVTGCAQMIARILAEA---GTPAGVYGWVNANNEGVSQMINDPRIAAVTVTGSVRAGAAIGAQAGA 226 (462)
T ss_dssp HHHTTCEEEEECCTTCHHHHHHHHHHHHHT---TCCBTTEEECCCCHHHHHHHHTSTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HHhcCCEEEEECCCCCcHHHHHHHHHHHHh---CCCcCeEEEEECCHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHhc
Confidence 999999999999999999999999999999 899999999998766778888899999999999999999999865
Q ss_pred -CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH-----------------
Q 005131 501 -KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI----------------- 561 (713)
Q Consensus 501 -~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~----------------- 561 (713)
.+|+++|||||||+||++|||++.| ..+++++++|+||.|++++|||||+++||+|+++|+
T Consensus 227 ~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~ 306 (462)
T 3etf_A 227 ALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVEEGIAQAFTDRFVAAAAALKMGDPLVEEND 306 (462)
T ss_dssp TTCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHHHHHHHHHHHHHHHCCBSCTTSTTCS
T ss_pred cCCceEEEcCCCCccEECCCCCHHHHHHHHHHHHHhcCCCcccCCcEEEEehhHHHHHHHHHHHHHHhhcCCCCccccCc
Confidence 6999999999999999999999999 567778888999999999999999999999999873
Q ss_pred -----------------HHHHhCCCEE-EcCCc---cccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHHH
Q 005131 562 -----------------DNLRSEGVTL-YGGPR---ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGHI 613 (713)
Q Consensus 562 -----------------~~~~~~Ga~l-~gg~~---~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~~ 613 (713)
++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||||+++
T Consensus 307 ~gpli~~~~~~~v~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 386 (462)
T 3etf_A 307 LGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALALA 386 (462)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCcEEeeEEEECCCCCChhhcCceeCcEEEEEEcCCHHHHHHHH
Confidence 4556789998 78763 345542 3 789999999999999999999999999999
Q ss_pred HccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEEEC
Q 005131 614 HQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKG 691 (713)
Q Consensus 614 N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~ 691 (713)
|+++|||++||||+|.++++++++++++|+||||++....+.+||||+|+||+|+ ++|++|+++||+.|+|+++
T Consensus 387 n~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~k~SG~G~----~~g~~g~~~~~~~k~v~~~ 460 (462)
T 3etf_A 387 NDSEFGLSATIFTADDTLAAEMAARLECGGVFINGYSASDARVAFGGVKKSGFGR----ELSHFGLHEFCNVQTVWKN 460 (462)
T ss_dssp HCSSCCSCEEEECSCHHHHHHHHHHCCSSEEEESSCCCCCTTSCBCCSGGGEECC----BSHHHHHHTTEEEEEEEEC
T ss_pred hCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCcCCCCCCc----cchHHHHHHHhceeEEEEe
Confidence 9999999999999999999999999999999999987777899999999999999 8999999999999999875
No 35
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=3.1e-79 Score=686.37 Aligned_cols=400 Identities=19% Similarity=0.199 Sum_probs=333.1
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+....+++|++..
T Consensus 28 ~P~t~~~~~~~~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 99 (485)
T 4dng_A 28 NPYDQSVITTASLAT--------GKQLEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTII 99 (485)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 467889999887775 999999999999999999999999999999999999999999999877777776554
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
+. ..|+..+++.+++++. .....+...+.. ..++...+++++|+|||++|+|| ||+.+. ++++|
T Consensus 100 ~a------------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 166 (485)
T 4dng_A 100 KS------------TIELEQTIAILDEAMTYTGELGGVKEVPS-DIEGKTNKIYRLPLGVISSISPFNFPMNLSMRSIAP 166 (485)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHGGGCSCEECCCC-SSTTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhCCeecccc-CCCCceEEEEEecceEEEEECCCccHHHHHHHHHHH
Confidence 31 1588999999999987 433333332211 12456788999999999999999 999985 99999
Q ss_pred HHHhCCEEEEeCCCCchHHH-HHHHHHHHHhccccCCCCeEEEecCC-chhHHhhhcCCCccEEEecCCHHHHHHHHHhc
Q 005131 423 AIRSGNGLLLKGGKEAKRSN-AILHKIITEVIPENVGERLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~-~~l~~~~~~al~~glP~g~v~vv~g~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~ 500 (713)
||++||+||+|||+.+|+++ .++++++.++ |+|+|+||+|+|. +++++.|..||+||+|+||||+++|+.|++.+
T Consensus 167 ALaaGN~VVlKps~~tp~~~~~~l~~~l~~a---GlP~gvv~vv~g~~~~~~~~L~~~p~v~~v~fTGS~~~g~~i~~~a 243 (485)
T 4dng_A 167 AIALGNSVVHKPDIQTAISGGTIIAKAFEHA---GLPAGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEIA 243 (485)
T ss_dssp HHHTTCEEEEECCGGGHHHHTHHHHHHHHHT---TCCTTSEEECCCCHHHHTTHHHHCSSCSEEEEEECHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCCcChHHHHHHHHHHHHHh---CcCCCeEEEEeCCChhHHHHHHhCCCCCEEEEECCcHHHHHHHHHH
Confidence 99999999999999999999 9999999999 8999999999985 56889999999999999999999999999875
Q ss_pred ---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH---------------
Q 005131 501 ---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI--------------- 561 (713)
Q Consensus 501 ---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~--------------- 561 (713)
.+|+++|||||||+||++|||++.| ..+++++++|+||.|+|++|||||+++||+|+++|+
T Consensus 244 a~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~~~~~~ 323 (485)
T 4dng_A 244 GRAFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVYDEFVEKFTARVKQLPYGDQTDPK 323 (485)
T ss_dssp HHHTCEEEEEECCCEEEEECTTSCHHHHHHHHHHHHTTCC----CCEEEEEEEHHHHHHHHHHHHHHHHHCCBSCTTSTT
T ss_pred hhhccchhhhcCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCccccCCEEEEeHHHHHHHHHHHHHHHHhccCCCCCcCC
Confidence 6999999999999999999999999 567778888999999999999999999999999873
Q ss_pred -------------------HHHHhCCCEE-EcCCccccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHHHH
Q 005131 562 -------------------DNLRSEGVTL-YGGPRASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGHIH 614 (713)
Q Consensus 562 -------------------~~~~~~Ga~l-~gg~~~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~~N 614 (713)
++++++|+++ +||...+.|+. + ++|++++||+||||++|++|+|+||||+++|
T Consensus 324 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~g~~~~Ptvl~~v~~~~~i~~eE~FGPvl~v~~~~~~~eAi~~an 403 (485)
T 4dng_A 324 TVVGPLINERQIEKALEIIEQAKTDGIELAVEGKRVGNVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDMAN 403 (485)
T ss_dssp CSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEESCCTTSHHHHCCCCSSEEEEEEESSHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCcEECCEEEecCCCCChhhcCccccceEEEEEeCCHHHHHHHHh
Confidence 4566789998 88876555553 3 7899999999999999999999999999999
Q ss_pred ccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCC-CCCCCCccCccceeeccccCCCcccchHhhceeEEEEEECCC
Q 005131 615 QHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTR-FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSG 693 (713)
Q Consensus 615 ~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~-~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~~~ 693 (713)
+++|||++||||+|.++++++++++++|+|+||+++. ..+.+||||+|.||+|+ ++|++|+++||+.|+|+++..
T Consensus 404 ~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~~~SG~G~----~~g~~~l~~~t~~k~v~~~~~ 479 (485)
T 4dng_A 404 DTEYGLSSAVFTSDLEKGEKFALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVGR----FGNPWVVEEFTVTKWISIQKQ 479 (485)
T ss_dssp CSSCCSEEEEECSCHHHHHHHHTTSCSSEEEESCC--------------------------CHHHHHHHEEEEEEEEEC-
T ss_pred CCCCCceEEEECCCHHHHHHHHHhcCcceEEECCCCCCCCCCCCcCCcCCCCCCc----cchHHHHHHhhceEEEEEecC
Confidence 9999999999999999999999999999999999864 36889999999999999 889999999999999998654
No 36
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=100.00 E-value=1.8e-78 Score=683.56 Aligned_cols=400 Identities=19% Similarity=0.188 Sum_probs=348.5
Q ss_pred HHHHh-cCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHH
Q 005131 264 ILKVL-QGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAA 342 (713)
Q Consensus 264 l~~~~-tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~ 342 (713)
+.++. +|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|+..+.+++|+
T Consensus 55 ~~nP~~t~~~i~~~~~~~--------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 126 (516)
T 1uzb_A 55 SLNPSAPSEVVGTTAKAG--------KAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGK 126 (516)
T ss_dssp EEETTEEEEEEEEEECCC--------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCC
T ss_pred EECCCCCCcEEEEEeCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34677 588888877664 999999999999999999999999999999999999999999999888888777
Q ss_pred HHHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HH
Q 005131 343 AEQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QI 419 (713)
Q Consensus 343 ~~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~ 419 (713)
+..++ ..|+..+++.+++|+. ..+..+...+.. ..++...++.++|+|||++|+|| ||+.++ ++
T Consensus 127 ~~~ea------------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~ 193 (516)
T 1uzb_A 127 NWVEA------------SADVAEAIDFIEYYARAALRYRYPAVEVV-PYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGM 193 (516)
T ss_dssp CHHHH------------HHHHHHHHHHHHHHHHHHGGGCSSCCCCC-CCTTEEEEEEEEECCEEEEECCSSSTTHHHHHH
T ss_pred CHHHH------------HHHHHHHHHHHHHHHHHHHHhcCCccccc-CCCCceEEEEEeccceEEEECCCccHHHHHHHH
Confidence 66442 1578889999999986 444333321111 11345678899999999999999 999884 99
Q ss_pred HHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHH
Q 005131 420 AALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKE 498 (713)
Q Consensus 420 ~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 498 (713)
++|||++||+||+|||+.+|+++..+++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++
T Consensus 194 ~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~ea---GlP~gvv~vv~g~~~~~~~~L~~~~~v~~I~FTGS~~~G~~i~~ 270 (516)
T 1uzb_A 194 IVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEA---GFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYE 270 (516)
T ss_dssp HHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHH---TCCTTSEEECCCSSSHHHHHHHTCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHh---CCCcCeEEEEeCCCchhhhhhhcCCCcCEEEecCCHHHHHHHHH
Confidence 999999999999999999999999999999999 899999999998 5778898999999999999999999999987
Q ss_pred hc---------CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHH------
Q 005131 499 ST---------KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELID------ 562 (713)
Q Consensus 499 ~~---------~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~------ 562 (713)
.+ .||+++|||||||+||++|||++.| ..+++++|+|+||.|+|++|+|||+++||+|+++|++
T Consensus 271 ~aa~~~~~~~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~ 350 (516)
T 1uzb_A 271 AAGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAERLS 350 (516)
T ss_dssp HHTSCCTTCCSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHHHHHHHHHHHHHTTCC
T ss_pred HhhhccccccccceeEEecCCccceeECCCCCHHHHHHHHHHHHHhCCCCccccCcEEEEchHHHHHHHHHHHHHHHhcc
Confidence 53 6999999999999999999999999 5677778889999999999999999999999998843
Q ss_pred ---------------------------HHHhCCCEE-EcCCc---cccccC------C-CCCCCccccccCceEEEEEeC
Q 005131 563 ---------------------------NLRSEGVTL-YGGPR---ASSLLN------I-PEPNSFHHEYNSMACTIEIVD 604 (713)
Q Consensus 563 ---------------------------~~~~~Ga~l-~gg~~---~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~ 604 (713)
+++++| ++ +||.. .+.|+. + ++|++++||+||||++|++|+
T Consensus 351 ~G~p~~~~~~Gpli~~~~~~~v~~~i~~a~~~G-~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~ 429 (516)
T 1uzb_A 351 VGPAEENPDLGPVVSAEQERKVLSYIEIGKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVK 429 (516)
T ss_dssp BSCGGGCCSBCCCSCHHHHHHHHHHHHHHTTTS-EEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEES
T ss_pred CCCCccccccCCCCCHHHHHHHHHHHHHHHHCC-CEEECCccCCCCCcEECCEEEECCCCCCHhhhccccCceEEEEEeC
Confidence 344567 66 88864 245542 3 689999999999999999999
Q ss_pred CHHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCC--CCCCCCccCccceeeccccCCCcccchHhhc
Q 005131 605 DVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGL 682 (713)
Q Consensus 605 ~~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~--~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~ 682 (713)
|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++. ..+.+||||+|.||+|+. ++|++++++|
T Consensus 430 ~~~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~~~PfGG~k~SG~G~~---~~g~~~l~~f 506 (516)
T 1uzb_A 430 DFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAK---TGALDYLRLF 506 (516)
T ss_dssp SHHHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCSGGGBSCCC---BTSHHHHHTT
T ss_pred CHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCEeEEEEeCCCCCCCCCCCCCCCcCcCCCCCc---cchHHHHHHc
Confidence 99999999999999999999999999999999999999999998743 356899999999999941 7899999999
Q ss_pred eeEEEEEEC
Q 005131 683 LTTRWILKG 691 (713)
Q Consensus 683 ~~~k~v~~~ 691 (713)
|++|+|+++
T Consensus 507 ~~~k~v~~~ 515 (516)
T 1uzb_A 507 LEMKAVAER 515 (516)
T ss_dssp EEEEEEEEE
T ss_pred CCeeEEEec
Confidence 999999864
No 37
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=100.00 E-value=1.2e-78 Score=673.31 Aligned_cols=407 Identities=35% Similarity=0.616 Sum_probs=345.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHHhcCchhhHhHhhcCHHHHHHHHH
Q 005131 289 EVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQEGYEKPLLSRLALKSGKISSLAN 368 (713)
Q Consensus 289 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ev~~~~~ 368 (713)
.+|+++|+++|++||+.|+++|+++|.++|+++++.|++++++|+.++.+++++++..++.++..+++..+..++..+++
T Consensus 25 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~~~~ 104 (444)
T 4ghk_A 25 DQYMTDVGRRARRASRSIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVE 104 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999998876544555677888888889999999
Q ss_pred HHHHHhcccCccccccccccccCCceeeeeeccceeEEEEecCCchHHHHHHHHHHHhCCEEEEeCCCCchHHHHHHHHH
Q 005131 369 SVRVLANMEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFESRPDALVQIAALAIRSGNGLLLKGGKEAKRSNAILHKI 448 (713)
Q Consensus 369 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~~P~~~~~~~~~ALaaGN~vv~Kps~~~~~~~~~l~~~ 448 (713)
.+++|+...++.+...+....+.+...+++++|+|||++|+||+|....++++|||++||+||+|||+.+|+++..++++
T Consensus 105 ~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~nP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l 184 (444)
T 4ghk_A 105 GLRQVATLPDPIGEMSNLKYRPSGIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALESNTALAKL 184 (444)
T ss_dssp HHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECSEEEEECCSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHHhhccccCccCCcccCCCCccceEEEeccEEEEEEeCCCcHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHH
Confidence 99999874444454443222234567889999999999999999854469999999999999999999999999999999
Q ss_pred HHHhc-cccCCCCeEEEecC-Cc-hhHHhhhcCCCccEEEecCCHHHHHHHHHhcCCCeEEecCccceEEEcCCCCHHHH
Q 005131 449 ITEVI-PENVGERLIGLVTS-RE-EIPDLLKLDDVIDLVIPRGSNRLVSQIKESTKIPVLGHADGICHIYVDKSADMDMA 525 (713)
Q Consensus 449 ~~~al-~~glP~g~v~vv~g-~~-~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~~~~v~lElgG~~p~iV~~dADl~~A 525 (713)
+.++| ..|+|+|+||+|+| +. +++++|..||+||+|+||||+.+|+.|++.+.||+++|||||||+||++|||++.|
T Consensus 185 ~~~~l~~aGlP~gvv~vv~g~~~~~~~~~L~~~p~vd~V~fTGs~~vg~~v~~~a~~pv~lELGGk~p~IV~~dADl~~A 264 (444)
T 4ghk_A 185 IGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEARVPMIKHLDGICHVYVDDRASVTKA 264 (444)
T ss_dssp HHHHHHHTTCCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCCSCBCCCCCCCCEEEECTTCCHHHH
T ss_pred HHHHHHHcCCCcccEEEEeCCCHHHHHHHHhcCCCccEEEEECcHHHHHHHHHhCCCCEEEEcCCcCeEEECCCCCHHHH
Confidence 97664 33799999999997 44 58999999999999999999999999999889999999999999999999999999
Q ss_pred -HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHHHHHhCCCEEEcCCccccccC-------C-CCCCCccccccCc
Q 005131 526 -KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDNLRSEGVTLYGGPRASSLLN-------I-PEPNSFHHEYNSM 596 (713)
Q Consensus 526 -~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~~~~~~Ga~l~gg~~~~~~~~-------v-~~~~~~~eE~FgP 596 (713)
..+++++++|+| .|+|++|+|||+++||+|+++|++.+.+....+.|.+....++. + ++|++++||+|||
T Consensus 265 a~~i~~~~~~n~G-~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~~~~g~p~~~~~i~~a~~G~~~~~~~~~~~eEiFGP 343 (444)
T 4ghk_A 265 LTVCDNAKTHRYG-TCNTMETLLVARGIAPAVLSPLGRLYREKGVELRVDADARAVLEAAGVGPLVDATDEDWRTEYLAP 343 (444)
T ss_dssp HHHCC----------CCCCCEEEEEGGGHHHHHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCCEECCSGGGTCC---C
T ss_pred HHHHHHHhcCCCc-ccCcCceEEEeHHHHHHHHHHHHHHHHHcCCeecCCHHHHHHHHhcccCcccCCCchhhhccccCc
Confidence 456677788889 99999999999999999999999988877665545433222221 3 6899999999999
Q ss_pred eEEEEEeCCHHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCccc
Q 005131 597 ACTIEIVDDVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGP 676 (713)
Q Consensus 597 vl~v~~~~~~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~ 676 (713)
|++|++|+|+||||+++|+++|||++||||+|.+++.++++++++|+|+||+++.+.+.+||||+|+||+|.++.|++|+
T Consensus 344 Vl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~pfGg~~~sG~g~~~~~~~G~ 423 (444)
T 4ghk_A 344 VLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISNDKLHARGP 423 (444)
T ss_dssp EEEEEEESSHHHHHHHHHHHSCSSEEEEECSBHHHHHHHHHHCCSSEEEEEECGGGCSTTTTTCSCCSEEECCSSSCCEE
T ss_pred eEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCcceEEEcCCCccCCCCCcCCcccccccCCcccCCCh
Confidence 99999999999999999999999999999999999999999999999999999777889999999999999766678999
Q ss_pred chHhhceeEEEEEECCCeee
Q 005131 677 VGVEGLLTTRWILKGSGQVV 696 (713)
Q Consensus 677 ~~l~~~~~~k~v~~~~~~~~ 696 (713)
+|+++||++|+|+++.+++|
T Consensus 424 ~gl~~~t~~K~v~~~~~~~~ 443 (444)
T 4ghk_A 424 VGLEGLTSLKYVVLGHGEGR 443 (444)
T ss_dssp ECGGGGEEEEEEEEEEEECC
T ss_pred hHHHhhceEEEEEECCCccc
Confidence 99999999999999988876
No 38
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=100.00 E-value=1e-78 Score=679.80 Aligned_cols=397 Identities=17% Similarity=0.148 Sum_probs=346.6
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.||+.++++...+ ++|+++|+++|++||+.|+++|+++|.++|++++++|++|+++|++.+.+++|+...
T Consensus 12 nP~tg~~~~~~~~~~--------~~~v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 83 (474)
T 4h7n_A 12 NPRTGKFDYVIIPPP--------PRLLAQQCNRARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTEALVNDTGRLSI 83 (474)
T ss_dssp CTTTCSEEEEECCCC--------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHSCSHH
T ss_pred CCCCCCEEEEEcCCC--------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 367899999887764 999999999999999999999999999999999999999999999888888876542
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
+ ..|+...++.+++|+. ..+........ ...++...+..++|+|||++|+|| ||+.++ ++++|
T Consensus 84 ~-------------~~ev~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~~~ 149 (474)
T 4h7n_A 84 T-------------VLEIDSFLASIDRWCGLAPELLQTSAKN-TSIPFIALQQSLVPYPLVGVISPWNFPLTLSMIDTIP 149 (474)
T ss_dssp H-------------HHHHHHHHHHHHHHHHHHHHHHCCEEEE-CSSTTEEEEEEEEECSEEEEEECSSSHHHHHHTTHHH
T ss_pred H-------------HHHHHHHHHHHHHHHhhhhhcccccccC-CCCCCccceEEEEeccEEEEECCCCcHHHHHhcccCc
Confidence 2 2578888888888876 22221111111 112445667789999999999999 999985 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHHhc--
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST-- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~-- 500 (713)
||++||+||+|||+.+|+++..+++++.++ ++|+|++|+|+|+.+.+..|..| +|+|+||||+++||.|++.+
T Consensus 150 ALaaGN~VVlKps~~tp~~~~~l~~~~~~a---g~p~gv~~~v~g~~~~~~~l~~~--v~~v~FTGS~~~G~~i~~~aa~ 224 (474)
T 4h7n_A 150 ALLAGCAVVVKPSEIAPRFVAPLLMALNTV---PELRDVLIFVEGGGETGANLINY--VDFVCFTGSVATGREVAETAAR 224 (474)
T ss_dssp HHHHTCEEEEEECTTSCTTHHHHHHHHTTC---TTTTTTEEECCCCHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHH
T ss_pred chhcCCceeecccccCchHHHHHHhhhhhh---cccccceeeccccchhhhhhhhc--cceEEeccccchhhhhhhhhhc
Confidence 999999999999999999999999999988 89999999999877778878765 99999999999999999864
Q ss_pred -CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHH------------------
Q 005131 501 -KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNEL------------------ 560 (713)
Q Consensus 501 -~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l------------------ 560 (713)
.||++||||||||+||++|||++.| ..+++++++|+||.|++++|+|||+++||+|++++
T Consensus 225 ~~~~v~lElGGk~p~iV~~dAdl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~ 304 (474)
T 4h7n_A 225 RFIPAYLELGGKDPAIVLESANLELATSAILWGAVVNTGQSCLSIERIYVAESKFEEFYHQLIAKAHRLQLAYPLVEDGA 304 (474)
T ss_dssp HTCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGHHHHHHHHHHHHHHCCBCCSSGGGCS
T ss_pred ccccccccCCCcCccccCchhhHHHHHHHHHhhhccCCCCceeecccccchHHHHHHHHHHHHHHhhccccCCCcccccc
Confidence 6999999999999999999999999 66788889999999999999999999999999977
Q ss_pred ----------------HHHHHhCCCEE-EcCCcc----ccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHH
Q 005131 561 ----------------IDNLRSEGVTL-YGGPRA----SSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGH 612 (713)
Q Consensus 561 ----------------~~~~~~~Ga~l-~gg~~~----~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~ 612 (713)
+++++++|+++ .||... +.|+. + ++|++++||+||||++|++|+|+||||++
T Consensus 305 ~gpli~~~~~~~v~~~i~~a~~~ga~v~~Gg~~~~~~~g~~~~Ptv~~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 384 (474)
T 4h7n_A 305 IGPIIAEKQAGIINDHILDAVEKGAVIHCGGKVEELGGGWWCRPTVMTNVNHSMKVMTEETFGPIMPVMPFPDVEEAVYL 384 (474)
T ss_dssp BCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCEEETTEEECCCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHHhhCceeccCCcccccCCCcccCceeEEeeccccccccccccCcEEEEEEECCHHHHHHH
Confidence 35677889999 777543 34442 4 79999999999999999999999999999
Q ss_pred HHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCC--CCCCCCccCccceeec-cccCCCcccchHhhceeEEEEE
Q 005131 613 IHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTR--FCDGARFGLGAEVGIS-TSRIHARGPVGVEGLLTTRWIL 689 (713)
Q Consensus 613 ~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~--~~~~~pfGG~k~SG~g-~~~~~~~g~~~l~~~~~~k~v~ 689 (713)
+|+++|||++||||+|.++++++++++++|+|+||+++. ..+.+||||+|.||+| + ++|++|+++|+++|+|+
T Consensus 385 aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~v~iN~~~~~~~~~~~pfgG~~~SG~G~~----~~G~~g~~~f~~~k~v~ 460 (474)
T 4h7n_A 385 ANDTIYGLSAAVFAGSEDEALKVARQLNAGAISINDAALTAMMHEGEKNAFNFSGLGGS----RVGAAGLKRFLRKQAFL 460 (474)
T ss_dssp HHCSSCCSEEEEECSSHHHHHHHHTTSCCSEEEESSSCGGGTCCCSCCCCCGGGEESCC----SSTTHHHHTTEEEEEEE
T ss_pred HHcCCCCCeEEEEeCCHHHHHHHHHhCCeeEEEECCCCccCCcCCCCCCCcCCCCCCCC----cchHHHHHHhCeEEEEE
Confidence 999999999999999999999999999999999998743 3578999999999998 5 77999999999999999
Q ss_pred ECCC
Q 005131 690 KGSG 693 (713)
Q Consensus 690 ~~~~ 693 (713)
++..
T Consensus 461 ~~~~ 464 (474)
T 4h7n_A 461 IKTN 464 (474)
T ss_dssp EECS
T ss_pred ECCC
Confidence 8654
No 39
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=100.00 E-value=3.9e-78 Score=672.43 Aligned_cols=387 Identities=20% Similarity=0.248 Sum_probs=332.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHHhcCchhhHhHhhcCHHHHHHHH
Q 005131 288 NEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQEGYEKPLLSRLALKSGKISSLA 367 (713)
Q Consensus 288 t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ev~~~~ 367 (713)
+.+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+..+.+++|++..+ +...|+.....+++.++
T Consensus 16 s~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~e----a~~~ev~~~~~~~~~~~ 91 (469)
T 3sza_A 16 HMSKISEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWN----AYYEEVVYVLEEIEYMI 91 (469)
T ss_dssp --CHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHH----HHHTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHH----HHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999998888888877654 23345555556777777
Q ss_pred HHHHHHhcccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHHHHHhCCEEEEeCCCCchHHHHHH
Q 005131 368 NSVRVLANMEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAALAIRSGNGLLLKGGKEAKRSNAIL 445 (713)
Q Consensus 368 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ALaaGN~vv~Kps~~~~~~~~~l 445 (713)
+.++.|+... +.+.... ..+...+++++|+|||++|+|| ||+.++ ++++|||++||+||+|||+.+|+++.++
T Consensus 92 ~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l 166 (469)
T 3sza_A 92 QKLPEWAADE-PVEKTPQ----TQQDELYIHSEPLGVVLVIGTWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLL 166 (469)
T ss_dssp HHHHHHHSCE-ECCCCGG----GTTSEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHhhhccc-ccCcccc----CCCccceeeccCCCEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHH
Confidence 7777666411 1111111 1234678899999999999999 999884 9999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCeEEEecCC-chhHHhhhcCCCccEEEecCCHHHHHHHHHhc---CCCeEEecCccceEEEcCCCC
Q 005131 446 HKIITEVIPENVGERLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST---KIPVLGHADGICHIYVDKSAD 521 (713)
Q Consensus 446 ~~~~~~al~~glP~g~v~vv~g~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~---~~~v~lElgG~~p~iV~~dAD 521 (713)
++++.++ +|+|+||+|+|+ +..++++ .| +||+|+||||+++|+.|++.+ .||+++|||||||+||++|||
T Consensus 167 ~~l~~~a----lP~gvv~vv~g~~~~~~~ll-~~-~vd~I~FTGS~~vG~~i~~~aa~~lkpv~lELGGk~p~iV~~dAD 240 (469)
T 3sza_A 167 ATIIPQY----LDKDLYPVINGGVPETTELL-KE-RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCD 240 (469)
T ss_dssp HHHHHHH----SCTTTSCBCCCSHHHHHHHT-TS-CCSEEEEESCHHHHHHHHHHHHTTTCCEEEECCCCCEEEECTTSC
T ss_pred HHHHHHh----CCcceEEEEECCHHHHHHHH-hc-CCCEEEEECCHHHHHHHHHHHhhccCceEEecCCCCceEECCCCC
Confidence 9999987 567799999986 4455555 45 799999999999999999865 599999999999999999999
Q ss_pred HHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHHHHHh----------------------------CCCEE-
Q 005131 522 MDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDNLRS----------------------------EGVTL- 571 (713)
Q Consensus 522 l~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~~~~~----------------------------~Ga~l- 571 (713)
++.| ..+++++|+|+||.|+|++|+|||+++||+|+++|++.+.+ +|+++
T Consensus 241 l~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~i~ga~v~ 320 (469)
T 3sza_A 241 LDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIEGQKVA 320 (469)
T ss_dssp HHHHHHHHHHHHHGGGGCCTTSCCEEEECGGGHHHHHHHHHHHHHHHHCSCGGGCTTCCCCSCHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEehhHHHHHHHHHHHHHHHhcCCCCcccCcccccCCHHHHHHHHHHHcCCEEE
Confidence 9999 56778888899999999999999999999999988644322 58888
Q ss_pred EcCCcc--ccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCee
Q 005131 572 YGGPRA--SSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSA 642 (713)
Q Consensus 572 ~gg~~~--~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G 642 (713)
+||... +.|+. + ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|
T Consensus 321 ~GG~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~~G 400 (469)
T 3sza_A 321 YGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSG 400 (469)
T ss_dssp ECCCEETTTTEECCEEEESCCTTSGGGTSCCCSSEEEEEECSSHHHHHHHHHHSCCCSEEEEECSCHHHHHHHHHHCCCS
T ss_pred eCCccCCCCceeCCeeecCCCCcchhhhccccCCeEEEEecCCHHHHHHHHHcCCCCceEEEECCCHHHHHHHHHhCCcc
Confidence 888643 34442 4 78999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCC--CCCCCCCccCccceeeccccCCCcccchHhhceeEEEEEECCC
Q 005131 643 AVFHNAST--RFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSG 693 (713)
Q Consensus 643 ~v~iN~~~--~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~~~ 693 (713)
+||||++. ...+.+||||+|+||+|+ ++|.+|+++||+.|+|+++..
T Consensus 401 ~V~vN~~~~~~~~~~~PfGG~k~SG~Gr----~~G~~g~~~ft~~K~v~~~~~ 449 (469)
T 3sza_A 401 GVAANDVIVHITLHSLPFGGVGNSGMGS----YHGKKSFETFSHRRSCLVRPL 449 (469)
T ss_dssp EEEESCSSGGGSCTTSCBCCCGGGEECC----BSTHHHHHHTEEEEEEEECCS
T ss_pred eEEEeCCCCCCCCCCCCcCCccccccCc----cchHHHHHHhhCeeEEEECCc
Confidence 99999985 346889999999999999 899999999999999998753
No 40
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=1.2e-78 Score=680.75 Aligned_cols=397 Identities=15% Similarity=0.128 Sum_probs=349.8
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|+..+.+++|++..
T Consensus 27 ~P~t~~~~~~~~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 98 (486)
T 1t90_A 27 NPATKEVLCQVPIST--------KEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTK 98 (486)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEEeCCC--------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 467889999887765 999999999999999999999999999999999999999999999888887777664
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhcc-cCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLANM-EDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
++ ..|+..+++.+++++.. ....++..+.. ..+...+++++|+|||++|+|| ||+.++ ++++|
T Consensus 99 ~a------------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ 164 (486)
T 1t90_A 99 EA------------LGEVGRGIENVEFAAGAPSLMMGDSLASI--ATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPM 164 (486)
T ss_dssp HH------------HHHHHHHHHHHHHHTTHHHHHCEEEEEEE--ETTEEEEEEEEECSEEEEECCSSCTTHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEecccCEEEEECCCchhHHHHHHHHHH
Confidence 41 15888999999998862 22233322211 2355678899999999999999 999885 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHHhc--
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST-- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~-- 500 (713)
||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+|+.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 165 ALaaGN~VVlKps~~tp~t~~~l~~l~~~a---GlP~gvv~vv~g~~~~~~~L~~~~~v~~I~fTGS~~~g~~i~~~aa~ 241 (486)
T 1t90_A 165 AIALGNTFILKPSERTPLLTEKLVELFEKA---GLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSE 241 (486)
T ss_dssp HHHTTCEEEEECCSSSCHHHHHHHHHHHHT---TCCTTSEEECCCSHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCCCChHHHHHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 899999999998666888888899999999999999999999875
Q ss_pred -CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCce-EEEcCCCchhHHHHHH----------------
Q 005131 501 -KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMET-LLIHQDLVPTGFNELI---------------- 561 (713)
Q Consensus 501 -~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~r-v~V~~~i~d~fi~~l~---------------- 561 (713)
.||+++|||||||+||++|||++.| ..+++++++|+||.|++++| +|||++ ||+|+++|+
T Consensus 242 ~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvv~v~~~-~d~f~~~l~~~~~~~~vG~~~~~~~ 320 (486)
T 1t90_A 242 NLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGI-ADEFMAKLQEKVADIKIGNGLDDGV 320 (486)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHH-HHHHHHHHHHHHTTCCBSCTTSTTC
T ss_pred cCCcEEeccCCCCcEEECCCCCHHHHHHHHHHHHHhCCCCCcccCCeeEEecCC-HHHHHHHHHHHHHhcccCCCCccCC
Confidence 7999999999999999999999999 56777788899999999999 999999 999999873
Q ss_pred ------------------HHHHhCCCEE-EcCCc----cccccC------C-CCCCCccccccCceEEEEEeCCHHHHHH
Q 005131 562 ------------------DNLRSEGVTL-YGGPR----ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIG 611 (713)
Q Consensus 562 ------------------~~~~~~Ga~l-~gg~~----~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~ 611 (713)
++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||||+
T Consensus 321 ~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPvl~v~~~~~~~eai~ 400 (486)
T 1t90_A 321 FLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIE 400 (486)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHHTCEEEECSSSSCCSSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCCEECCEEEeCCCCCCHhhcCcccCceEEEEEeCCHHHHHH
Confidence 4556779998 78753 244542 3 6889999999999999999999999999
Q ss_pred HHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCC-CCCCCccCccceeec--cccCCCcccchHhhceeEEEE
Q 005131 612 HIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRF-CDGARFGLGAEVGIS--TSRIHARGPVGVEGLLTTRWI 688 (713)
Q Consensus 612 ~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfGG~k~SG~g--~~~~~~~g~~~l~~~~~~k~v 688 (713)
++|+++|||++||||+|.++++++++++++|+|+||++... .+.+||||+|+||+| + ++|++|+++|++.|+|
T Consensus 401 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~G~~~----~~g~~g~~~~~~~k~v 476 (486)
T 1t90_A 401 IANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGTLH----ANGKDSVDFYTRKKVV 476 (486)
T ss_dssp HHHHSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCCTTSCCCCEETTEESSSC----SSHHHHHHHTEEEEEE
T ss_pred HHhCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCCcCCCCcCCCCCCc----cchHHHHHHhhceEEE
Confidence 99999999999999999999999999999999999987543 468999999999999 6 8899999999999999
Q ss_pred EECC
Q 005131 689 LKGS 692 (713)
Q Consensus 689 ~~~~ 692 (713)
+++.
T Consensus 477 ~~~~ 480 (486)
T 1t90_A 477 TARY 480 (486)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8753
No 41
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=100.00 E-value=1.1e-77 Score=668.57 Aligned_cols=402 Identities=15% Similarity=0.165 Sum_probs=330.5
Q ss_pred hhHHHHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHH
Q 005131 262 ENILKVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVA 341 (713)
Q Consensus 262 ~~l~~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~ 341 (713)
+-++++.+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++++++|+..+.+++|
T Consensus 8 ~~~~~~~~~~~i~~v~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 79 (457)
T 3lns_A 8 HHHSSGHIDDDDKHMNYLS--------PAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLG 79 (457)
T ss_dssp ---------------CCCC--------HHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHC
T ss_pred ccccCCCCCCeeeecCCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 3456777888888877664 99999999999999999999999999999999999999999999988888888
Q ss_pred HHHHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccc-cccccccccCCceeeeeeccceeEEEEecC-CchHHH-
Q 005131 342 AAEQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIG-HILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV- 417 (713)
Q Consensus 342 ~~~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~-~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~- 417 (713)
++..++ ... |+..+++.+++++. ..+..+ ..........+...+++++|+|||++|+|| ||+.+.
T Consensus 80 k~~~ea----~~~-------ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~ 148 (457)
T 3lns_A 80 KPKDVV----DLA-------EIGAVLHEIDFALAHLDEWVAPVSVPSPDIIAPSECYVVQEPYGVTYIIGPFNYPVNLTL 148 (457)
T ss_dssp CCHHHH----HHH-------THHHHHHHHHHHHHHHHHHTSCEEECCCGGGCSCEEEEEEEECCEEEEECCSSSTTHHHH
T ss_pred CCHHHH----HHH-------HHHHHHHHHHHHHHHHHHhhccccccccccCCCcceEEEeecceEEEEECCCcchHHHHH
Confidence 776441 112 44555555555543 111111 111100011345678899999999999999 999985
Q ss_pred HHHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHH
Q 005131 418 QIAALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIK 497 (713)
Q Consensus 418 ~~~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~ 497 (713)
++++|||++||+||+|||+.+|+++.++++++.++ +|+|+||+|+|+.++++.|.. ++||+|+||||+++|+.|+
T Consensus 149 ~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~a----lP~gvv~vv~g~~~~~~~L~~-~~vd~V~fTGS~~~G~~i~ 223 (457)
T 3lns_A 149 TPLIGAIIGGNTCIIKPSETTPETSAVIEKIIAEA----FAPEYVAVIQGGRDENSHLLS-LPFDFIFFTGSPNVGKVVM 223 (457)
T ss_dssp HHHHHHHHTTCEEEEECCTTCHHHHHHHHHHHHHH----CCTTTEEECCCCHHHHHHHTT-SCCSEEEEESCHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHh----CCHhhEEEecCCHHHHHHHhc-CCCCEEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999998 677799999987667777876 7899999999999999998
Q ss_pred Hhc---CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHHHHHhC------
Q 005131 498 EST---KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDNLRSE------ 567 (713)
Q Consensus 498 ~~~---~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~~~~~~------ 567 (713)
+.+ +||+++|||||||+||++|||++.| ..+++++++|+||.|++++|||||+++||+|+++|++.+.+.
T Consensus 224 ~~aa~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~p~~~~ 303 (457)
T 3lns_A 224 QAAAKHLTPVVLELGGKCPLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDALLERLVERVKTELPEINS 303 (457)
T ss_dssp HHHHTTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGHHHHHHHHHHHHHHHCCSTTT
T ss_pred HHHhhccCceEEECCCCCCCeECCCCCHHHHHHHHHHHHHHhCCCCccCCceEEEcHHHHHHHHHHHHHHHHhcCCCccc
Confidence 875 5999999999999999999999999 567778888999999999999999999999999997665432
Q ss_pred --------------------CCEE-EcCCc--cccccC------C-CCCCCccccccCceEEEEEeCCHHHHHHHHHc-c
Q 005131 568 --------------------GVTL-YGGPR--ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAAIGHIHQ-H 616 (713)
Q Consensus 568 --------------------Ga~l-~gg~~--~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~~N~-~ 616 (713)
++++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||||+++|+ +
T Consensus 304 ~gpli~~~~~~rv~~~i~~a~~~~~~gg~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~ 383 (457)
T 3lns_A 304 TGKLVTERQVQRLVSLLEATQGQVLVGSQADVSKRALSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHH 383 (457)
T ss_dssp TCCCSSHHHHHHHHHHHHHCCSEEEECCCEEGGGTEECCEEEESCCTTSGGGSSCCCSSEEEEEEESCHHHHHHHHHHHS
T ss_pred ccCCCCHHHHHHHHHHHHhcCCeEEeCCccCCCCceeCCEEEecCCCCChhhcCcccCcEEEEEEeCCHHHHHHHHHcCC
Confidence 2466 78864 244442 3 78999999999999999999999999999999 9
Q ss_pred CCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCC--CCCCCCccCccceeeccccCCCcccchHhhceeEEEEEEC
Q 005131 617 GSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKG 691 (713)
Q Consensus 617 ~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~--~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~ 691 (713)
+|||++||||+|.++++++++++++|+||||++.. ..+.+||||+|.||+|+ ++|++|+++||+.|+|++.
T Consensus 384 ~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~~PfGG~k~SG~G~----~~g~~~~~~f~~~k~v~~~ 456 (457)
T 3lns_A 384 PKPLAVYVFGKDMDVAKGIINQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMGE----YHGHFSYLTFTHKKSVRIV 456 (457)
T ss_dssp CSCSEEEEECSCHHHHHHHHHTSCCSEEEESCCSGGGGCTTSCBCCCGGGEECC----BSHHHHHHHTEEEEEEEEC
T ss_pred CCCeEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCCcCCcCcCCCCC----CchHHHHHHhhCeeEEEeC
Confidence 99999999999999999999999999999999843 46889999999999999 8999999999999999863
No 42
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=4e-78 Score=676.25 Aligned_cols=391 Identities=18% Similarity=0.172 Sum_probs=324.4
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.+|+.++++...+ .+|+++++++|++||+.|++++.++|.++|+++++.|++++++|+..+.+++|++..
T Consensus 29 ~P~tg~~i~~~~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ 100 (478)
T 3ty7_A 29 NPATEEVIGKVAKGN--------KADVDKAVEAADDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPLS 100 (478)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEECCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH
Confidence 467899999887775 999999999999999999999999999999999999999999999887777776654
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
++. ..|+..+++.+++++. ..+..+... +...++.++|+|||++|+|| ||+.+. ++++|
T Consensus 101 ea~-----------~~ev~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 162 (478)
T 3ty7_A 101 LSE-----------RVHYQMGLNHFVAARDALDNYEFEER-------RGDDLVVKEAIGVSGLITPWNFPTNQTSLKLAA 162 (478)
T ss_dssp HHH-----------HTHHHHHHHHHHHHHHHHHHCCSEEE-------ETTEEEEEEECCCEEEECCSSSTTHHHHHHHHH
T ss_pred HHh-----------HHHHHHHHHHHHHHHHHHHHhhcccC-------CccceEEecCceEEEEECCCcchHHHHHHHHHH
Confidence 410 1578888888998886 333222211 12467899999999999999 999885 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHhc-
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~- 500 (713)
||++||+||+|||+.+|+++.++++++.++ |+|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 163 ALaaGN~VVlKps~~tp~t~~~l~~~~~~a---GlP~gvv~vv~g~~~~~~~~L~~~~~v~~v~fTGS~~~G~~i~~~aa 239 (478)
T 3ty7_A 163 AFAAGSPVVLKPSEETPFAAVILAEIFDKV---GVPKGVFNLVNGDGAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKAA 239 (478)
T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHHHH---TCCTTTEEECCCCTTTTHHHHHHCTTCCEEEECSCHHHHCC--CSTT
T ss_pred HHHcCCeEEEECCCcchHHHHHHHHHHHHh---CcCcCeEEEEECCChHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999998 567899999999999999999999999999875
Q ss_pred --CCCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH----------------
Q 005131 501 --KIPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI---------------- 561 (713)
Q Consensus 501 --~~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~---------------- 561 (713)
.+|+++|||||||+||++|||++.| ..+++++++|+||.|++++|||||+++||+|+++|+
T Consensus 240 ~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~ 319 (478)
T 3ty7_A 240 KDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIKDAFLAELKEQFSQVRVGNPREDGT 319 (478)
T ss_dssp TTTCEEECCCCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEETTTHHHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred hcCCceEEecCCCCCcccCCCCCHHHHHHHHHHHHHHhCCCCccCCCeEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCC
Confidence 5999999999999999999999999 567778888999999999999999999999999884
Q ss_pred ------------------HHHHhCCCEE-EcCCc------cccccC------C-CCCCCccccccCceEEEEEeCCHHHH
Q 005131 562 ------------------DNLRSEGVTL-YGGPR------ASSLLN------I-PEPNSFHHEYNSMACTIEIVDDVHAA 609 (713)
Q Consensus 562 ------------------~~~~~~Ga~l-~gg~~------~~~~~~------v-~~~~~~~eE~FgPvl~v~~~~~~~eA 609 (713)
++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+|||
T Consensus 320 ~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~eA 399 (478)
T 3ty7_A 320 QVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDLDEA 399 (478)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHH
T ss_pred ccCCCcCHHHHHHHHHHHHHHHHCCCEEEecCccCccccCCCceeCCEEEecCCCCCcccCceeECceeEEEecCCHHHH
Confidence 3445679998 77731 244542 3 68999999999999999999999999
Q ss_pred HHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCccCccceeeccccCCCcccchHhhceeEEEEE
Q 005131 610 IGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 689 (713)
Q Consensus 610 i~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~ 689 (713)
|+++|+++|||++||||+|.++++++++++++|+|+||+ +...+.+||||+|+||+|+ ++|++|+++||+.|+|+
T Consensus 400 i~~an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~-~~~~~~~PfGG~k~SG~G~----~~G~~~l~~~t~~k~v~ 474 (478)
T 3ty7_A 400 IQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTVEINE-AGRKPDLPFGGYKQSGLGR----EWGDYGIEEFLEVKSIA 474 (478)
T ss_dssp HHHHTCSSCCSEEEEECSCHHHHHHHHHHSCSSEEEETT-CC--------------------------CCGGGEEEEEEE
T ss_pred HHHHhCCCCCceEEEECCCHHHHHHHHHhCCcCeEEECC-CCCCCCCCcCCcCcCcCCc----cchHHHHHHhcCeEEEE
Confidence 999999999999999999999999999999999999999 5556789999999999999 89999999999999998
Q ss_pred E
Q 005131 690 K 690 (713)
Q Consensus 690 ~ 690 (713)
.
T Consensus 475 ~ 475 (478)
T 3ty7_A 475 G 475 (478)
T ss_dssp T
T ss_pred E
Confidence 4
No 43
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=100.00 E-value=5.4e-76 Score=654.40 Aligned_cols=413 Identities=40% Similarity=0.648 Sum_probs=317.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHHhcCchhhHhHhhc-CHHHHHHHHHH
Q 005131 291 GAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQEGYEKPLLSRLAL-KSGKISSLANS 369 (713)
Q Consensus 291 ~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ev~~~~~~ 369 (713)
.+++|+++|++||+.|++++.++|.++|++++++|++++++|++.+.++++++...++.++..+|+.. +..+++..++.
T Consensus 15 ~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~a~~ 94 (468)
T 1vlu_A 15 SSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVMLQG 94 (468)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999855555566678888 88899999999
Q ss_pred HHHHhcccCccccccccccccCCceeeeeeccceeEEEEecCCchHH-HHHHHHHHHhCCEEEEeCCCCchHHHHHHHHH
Q 005131 370 VRVLANMEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFESRPDAL-VQIAALAIRSGNGLLLKGGKEAKRSNAILHKI 448 (713)
Q Consensus 370 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~~P~~~-~~~~~~ALaaGN~vv~Kps~~~~~~~~~l~~~ 448 (713)
++.+....++.++..+....+++...+++++|+|||++|+||+| .+ .++++|||++||+||+|||+.+|+++..++++
T Consensus 95 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~pwNP-~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l 173 (468)
T 1vlu_A 95 IKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFESRP-EVIANITALSIKSGNAAILKGGKESVNTFREMAKI 173 (468)
T ss_dssp HHHHHHSCCSSSCEEEEEEEETTEEEEEEEEECCEEEEEESSCT-HHHHHHHHHHHHHTCEEEEECCGGGHHHHHHHHHH
T ss_pred HHHHhhcCCCCCeecccccCCCCceeEEEecCcceEEEEeccCh-HHHHHHHHHHHHcCCEEEEEcCCccHHHHHHHHHH
Confidence 99887644444443221111235567899999999999999999 65 59999999999999999999999999999999
Q ss_pred HHHhccc-----cCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHHhcCCCeEEecCccceEEEcCCCCHH
Q 005131 449 ITEVIPE-----NVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKESTKIPVLGHADGICHIYVDKSADMD 523 (713)
Q Consensus 449 ~~~al~~-----glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~~~~v~lElgG~~p~iV~~dADl~ 523 (713)
+.++|.+ |+|+|+||+|++.++++++|..||+||+|+||||+++|+.|++.+.||+++|||||||+||++|||++
T Consensus 174 ~~~aL~e~~~~aGlP~gvv~vv~~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~a~kpv~lElGGk~p~iV~~dADl~ 253 (468)
T 1vlu_A 174 VNDTIAQFQSETGVPVGSVQLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDADLI 253 (468)
T ss_dssp HHHHHHHHHHHHCCCTTSEEECCCC--CGGGGGCTTTCCEEEEESCHHHHHHHHHTCCSCBTTBCSCCEEEEECTTCCHH
T ss_pred HHHHHHhhchhcCCCCCcEEEECCHHHHHHHHhhCCCcCEEEEECCHHHHHHHHHhcCCCEEeecCCccceEECCCCCHH
Confidence 9855444 79999999999334789999999999999999999999999998899999999999999999999999
Q ss_pred HH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHHHHHhCCCEEEcCCcccc---------------ccC---C-
Q 005131 524 MA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDNLRSEGVTLYGGPRASS---------------LLN---I- 583 (713)
Q Consensus 524 ~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~~~~~~Ga~l~gg~~~~~---------------~~~---v- 583 (713)
.| ..+++++++|+| .|+|++|+|||+++ |+|+++|++.+.+...++.|.+.... |.+ +
T Consensus 254 ~Aa~~i~~~~~~n~G-~C~a~~rvlV~~~i-d~f~~~l~~~~~~~~v~~~Gdp~~~~~~i~~a~~~~~gG~g~~Ptvlv~ 331 (468)
T 1vlu_A 254 KAKRISLDAKTNYPA-GCNAMETLLINPKF-SKWWEVLENLTLEGGVTIHATKDLKTAYFDKLNELGKLTEAIQCKTVDA 331 (468)
T ss_dssp HHHHHHHHTTCC-----CCCCEEEEECTTS-TTHHHHHHHHHHHHCCCBEECHHHHHHHHHHHHHHTCCCHHHHTTBC--
T ss_pred HHHHHHHHHhcCCCC-cCCcCcEEEEECCH-HHHHHHHHHHHHhcCCeecCCHHHhcccccccceeeccCCCCCCceeeC
Confidence 99 556677788999 99999999999999 99999998777665543333321111 111 4
Q ss_pred CCCCCccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCCCCCCCCcc----
Q 005131 584 PEPNSFHHEYNSMACTIEIVDDVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTRFCDGARFG---- 659 (713)
Q Consensus 584 ~~~~~~~eE~FgPvl~v~~~~~~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG---- 659 (713)
++|++++||+||||++|++|+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||+++...+.+|||
T Consensus 332 ~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~pfG~Gg~ 411 (468)
T 1vlu_A 332 DEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTENKANAEKFMKGVDSSGVYWNASTRFADGFRYGFGAE 411 (468)
T ss_dssp -----------CCCCEEEECCSHHHHHHHHTTSCSSCEEEEECSCHHHHHHHHHHCCCSEEEESSCGGGCC---------
T ss_pred CCchhhhcCccCceEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCeeEEEEcCCCCCCCCCCCCCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999987777889999
Q ss_pred -CccceeeccccCCCcccchHhhceeEEEEEECCCeeec--C--CCCcccccccccC
Q 005131 660 -LGAEVGISTSRIHARGPVGVEGLLTTRWILKGSGQVVD--G--DKGVEYIHEDVNI 711 (713)
Q Consensus 660 -G~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~~~~~~~--~--~~~~~~~~~~~~~ 711 (713)
|+|.||+|+ + |++|+++|+++|+|+++.+++|+ + ..+-.|.|.++++
T Consensus 412 ~G~~~SG~g~----~-G~~gl~~f~~~K~v~~~~~~~r~py~~~~~~~~~~~~~~~~ 463 (468)
T 1vlu_A 412 VGISTSKIHA----R-GPVGLDGLVSYQYQIRGDGQVASDYLGAGGNKAFVHKDLDI 463 (468)
T ss_dssp ------------------CCSGGGEEEEEEEECSSCCSCCC----------------
T ss_pred cceecCCCCC----C-cchHHHHhcceEEEEECCCCcCccccccccccceecCCCCc
Confidence 999999998 8 99999999999999999888885 2 3457898887653
No 44
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=100.00 E-value=2.7e-75 Score=659.82 Aligned_cols=397 Identities=15% Similarity=0.153 Sum_probs=339.0
Q ss_pred HHhc-CCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-HHHHHHHHhhHHHHH
Q 005131 266 KVLQ-GERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEAN-EELIIEENEADVAAA 343 (713)
Q Consensus 266 ~~~t-ge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~-~~~l~~~~~~~~~~~ 343 (713)
++.+ ++.++++...+ .+|+++|+++|++||+.|+++++++|+++|++++++|+++ +++|+..+.++.|++
T Consensus 83 ~P~~~~~~i~~~~~a~--------~~dv~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~~el~~~~~~e~Gk~ 154 (563)
T 4e3x_A 83 SPFNHAHKVAKFCYAD--------KALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKT 154 (563)
T ss_dssp ETTEEEEEEEEEECCC--------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHCCC
T ss_pred CCCCCCcEEEEEeCCC--------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcCCC
Confidence 4555 56777776664 9999999999999999999999999999999999999998 999997776777766
Q ss_pred HHhcCchhhHhHhhcCHHH-HHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HH
Q 005131 344 EQEGYEKPLLSRLALKSGK-ISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QI 419 (713)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~e-v~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~ 419 (713)
..++. .+ +..+++.+++++. ..+..+..... .+.+...+.++.|+|||++|+|| ||+.+. ++
T Consensus 155 ~~ea~------------~e~v~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~r~p~GVV~~I~PwNfP~~~~~~~ 220 (563)
T 4e3x_A 155 VIQAE------------IDAAAELIDFFRFNAKFAVELEGEQPIS--VPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLA 220 (563)
T ss_dssp HHHHH------------HHTTHHHHHHHHHHHHHHHHHTTCCCCC--CTTEEEEEECCBCSSEEEEECCSSCHHHHHHHH
T ss_pred HHHHh------------HHHHHHHHHHHHHHHHHHHHhhCCCccC--CCCCcceEEEecCceEEEEECCchHHHHHHHHH
Confidence 54410 23 6788888888886 33332221111 11234566788889999999999 999885 99
Q ss_pred HHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCC-chhHHhhhcCCCccEEEecCCHHHHHHHHH
Q 005131 420 AALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNRLVSQIKE 498 (713)
Q Consensus 420 ~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 498 (713)
++||| +||+||+|||+.+|+++.++++++.++ |+|+|+||+|+|. .++++.|..||+|++|+||||+++|+.|++
T Consensus 221 ~apAL-aGNtVVlKPs~~tp~sa~~l~~ll~eA---GlP~Gvvnvv~g~g~~~g~~L~~hp~v~~I~FTGSt~vG~~i~~ 296 (563)
T 4e3x_A 221 GAPAL-MGNVVLWKPSDTAMLASYAVYRILREA---GLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWR 296 (563)
T ss_dssp HHHHH-TTCCEEEECCGGGHHHHHHHHHHHHHT---TCCTTSEEECCCCHHHHHHHHTTCTTEEEEEEESCHHHHHHHHH
T ss_pred HHHhh-cCCEEEEECCCCChHHHHHHHHHHHHh---CCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 99999 599999999999999999999999999 9999999999984 678999999999999999999999999987
Q ss_pred hc---CC------CeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHH------
Q 005131 499 ST---KI------PVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELID------ 562 (713)
Q Consensus 499 ~~---~~------~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~------ 562 (713)
.+ .+ |+++|||||||+||++|||++.| ..+++++|+|+||.|+|++|+|||+++||+|+++|++
T Consensus 297 ~aa~~lk~~~~~prv~lElGGk~p~IV~~dADld~Aa~~iv~~~f~~~GQ~C~A~~rv~V~~si~d~f~~~l~~~~~~l~ 376 (563)
T 4e3x_A 297 QVAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLWPQIKGRLLEEHSRIK 376 (563)
T ss_dssp HHHHTTTTCSSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGHHHHHHHHHHHHHTCC
T ss_pred HHHhhCCccccCCceeccCCCCCceeeCCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEecchHHHHHHHHHHHHHhcc
Confidence 64 45 59999999999999999999999 5677788889999999999999999999999998743
Q ss_pred -----------------------------HHHh-CCCEE-EcCCc---cccccC------C-CCCCCccccccCceEEEE
Q 005131 563 -----------------------------NLRS-EGVTL-YGGPR---ASSLLN------I-PEPNSFHHEYNSMACTIE 601 (713)
Q Consensus 563 -----------------------------~~~~-~Ga~l-~gg~~---~~~~~~------v-~~~~~~~eE~FgPvl~v~ 601 (713)
++++ +|+++ +||.. .+.|+. + ++|++++||+||||++|+
T Consensus 377 vGdp~~d~~~~~Gpli~~~~~~rv~~~i~~a~~~~ga~v~~GG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~ 456 (563)
T 4e3x_A 377 VGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVY 456 (563)
T ss_dssp BSCTTTCTTCSBCCCSCHHHHHHHHHHHHHHHHCTTEEEEECCCEECSSSCEECCEEEEESCTTCGGGTSCCCSSEEEEE
T ss_pred CCCcccCcCCccCCCcCHHHHHHHHHHHHHHhhcCCCEEEeCCccCCCCCcEecCEEEecCCCCChhhcCCCcCeEEEEE
Confidence 3443 68888 78754 244542 3 789999999999999999
Q ss_pred EeCC--HHHHHHHH-HccCCCceeEEEcCCHHHHHHHHhccC--eeeEEEcCCCC--CCCCCCccCccceeec-cccCCC
Q 005131 602 IVDD--VHAAIGHI-HQHGSGHTDCIITNDSEAAEIFLRQVD--SAAVFHNASTR--FCDGARFGLGAEVGIS-TSRIHA 673 (713)
Q Consensus 602 ~~~~--~~eAi~~~-N~~~~gL~a~v~t~d~~~a~~~~~~l~--~G~v~iN~~~~--~~~~~pfGG~k~SG~g-~~~~~~ 673 (713)
+|+| +||||+++ |+++|||+++|||+|.+++.+++++++ +|+||||+++. ..+.+||||+|.||+| + +
T Consensus 457 ~~~d~~~deAi~~ann~s~yGLta~V~t~d~~~~~~~~~~l~~~aG~v~IN~~~~~~~~~~~PFGG~k~SG~g~~----~ 532 (563)
T 4e3x_A 457 VYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTNDK----P 532 (563)
T ss_dssp EECGGGHHHHHHHHHHSSSEESEEEEECSCHHHHHHHHHHTTTTCSEEEESSCSCCCCTTTSCCCCEETTBCCCC----T
T ss_pred EECCCCHHHHHHHHHcCCCCCCEEEEEeCCHHHHHHHHHhhhcCeeEEEEcCCCCCCCcCCCCCCCccccCCCCc----c
Confidence 9996 79999999 799999999999999999999999975 99999999743 3578999999999999 5 8
Q ss_pred cccchHhhceeEEEEEECC
Q 005131 674 RGPVGVEGLLTTRWILKGS 692 (713)
Q Consensus 674 ~g~~~l~~~~~~k~v~~~~ 692 (713)
+|+++|++|+++|+|..+.
T Consensus 533 ~G~~~l~~~~~~k~v~~~~ 551 (563)
T 4e3x_A 533 GGPHYILRWTSPQVIKETH 551 (563)
T ss_dssp TSTTGGGGGBCCEEEEEEC
T ss_pred CCHHHHHHhCceEEEEEeC
Confidence 9999999999999999753
No 45
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=100.00 E-value=4e-75 Score=652.82 Aligned_cols=392 Identities=17% Similarity=0.160 Sum_probs=341.6
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQ 345 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~ 345 (713)
++.||+.++++...+ .+|+++++++|++||+.|++++.++|.++|++++++|++++++|+..+.+++|++..
T Consensus 26 ~P~tg~~~~~~~~~~--------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 97 (490)
T 3ju8_A 26 DPVGQGVVWSGRGAD--------ATQVDAAVCAAREAFPAWARRPLEQRIELLERFAATLKSRADELARVIGEETGKPLW 97 (490)
T ss_dssp CTTTCCEEEEEECCC--------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred CCCCCCEEEEECCCC--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 467899999887775 999999999999999999999999999999999999999999999888888777664
Q ss_pred hcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHH
Q 005131 346 EGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAAL 422 (713)
Q Consensus 346 ~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ 422 (713)
++ ..|+..+++.+++++. .....+..... ..+...+.+++|+|||++|+|| ||+.++ ++++|
T Consensus 98 ea------------~~ev~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 162 (490)
T 3ju8_A 98 ES------------ATEVTSMVNKVAISVQAFRERTGEKSGP---LADATAVLRHKPHGVVAVFGPYNFPGHLPNGHIVP 162 (490)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHHHHHSCCEEEE---ETTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhcCCcccc---CCCCeeeEEECCCCEEEEECCCcchHHHHHHHHHH
Confidence 42 1578888888888876 22222222211 1233456679999999999999 999885 99999
Q ss_pred HHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHHhc--
Q 005131 423 AIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST-- 500 (713)
Q Consensus 423 ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~-- 500 (713)
||++||+||+|||+.+|+++.++++++.++ |+|+|++|+|+|+.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 163 ALaaGN~VVlKps~~tp~t~~~l~~l~~~a---GlP~gvv~vv~g~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa~ 239 (490)
T 3ju8_A 163 ALLAGNCVVFKPSELTPKVAELTLKAWIQA---GLPAGVLNLVQGGRETGVALAAHRGLDGLFFTGSSRTGNLLHSQFGG 239 (490)
T ss_dssp HHHHTCEEEEECCTTCHHHHHHHHHHHHHT---TCCTTTEEECCCSHHHHHHHHTCTTCSEEEEESCHHHHHHHHHHTTT
T ss_pred HHHcCCeEEEECCCCCcHHHHHHHHHHHHh---CcCcCeEEEEeCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhhc
Confidence 999999999999999999999999999999 899999999998777889999999999999999999999999875
Q ss_pred -CCCe-EEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCC-chhHHHHHH---------------
Q 005131 501 -KIPV-LGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDL-VPTGFNELI--------------- 561 (713)
Q Consensus 501 -~~~v-~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i-~d~fi~~l~--------------- 561 (713)
.+|+ ++|||||||+||++|||++.| ..+++++++|+||.|++++|+|||+++ ||+|+++|+
T Consensus 240 ~~~~v~~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~d~f~~~l~~~~~~~~~G~~~~~~ 319 (490)
T 3ju8_A 240 QPQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWGDALLARLVAVSATLRVGRFDEQP 319 (490)
T ss_dssp CTTSEEEEECCCCEEEEECCCSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEESSHHHHHHHHHHHHHHHHCCBCCTTCSS
T ss_pred cCCCcEEeecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCCEEEEECCccHHHHHHHHHHHHHhccCCCCCCCC
Confidence 4898 799999999999999999999 567788888999999999999999996 999998773
Q ss_pred --------------------HHHHhCCCEE-EcCCc---cccccC-----C-CCCCCccccccCceEEEEEeCCHHHHHH
Q 005131 562 --------------------DNLRSEGVTL-YGGPR---ASSLLN-----I-PEPNSFHHEYNSMACTIEIVDDVHAAIG 611 (713)
Q Consensus 562 --------------------~~~~~~Ga~l-~gg~~---~~~~~~-----v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~ 611 (713)
++++++|+++ +||.. .+.|+. + ++|++++||+||||++|++|+|+||||+
T Consensus 320 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~PTvl~v~~~~~i~~eEiFGPVl~v~~~~~~~eAi~ 399 (490)
T 3ju8_A 320 APFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGILDVSAVAERPDEEFFGPLLQVIRYSDFAAAIR 399 (490)
T ss_dssp CCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCCCSTTSCCCCCEEEECTTCSSCCCCCCCSSEEEEEEESSHHHHHH
T ss_pred cCccccccCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCCEEccEEEEeCCCCccccccccccEEEEEEeCCHHHHHH
Confidence 4456789998 77754 234442 4 7899999999999999999999999999
Q ss_pred HHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCC-CCCCCCccCccceeeccccCCCcccchHhhceeEEEEEE
Q 005131 612 HIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTR-FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILK 690 (713)
Q Consensus 612 ~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~-~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~ 690 (713)
++|+++|||++||||+|.++++++++++++|+|+||+++. ..+.+||||+|.||++ ++++|++.|+|++
T Consensus 400 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~~~SG~~----------~~~~~~~~k~v~~ 469 (490)
T 3ju8_A 400 EANATQYGLAAGLLSDSRERFEQFLVESRAGIVNWNKQLTGAASSAPFGGIGASGNH----------RPSAYYAADYCAY 469 (490)
T ss_dssp HHHCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSCSSCCCTTSEECCCGGGBSS----------CCEETTHHHHHEE
T ss_pred HHhcCCCCceEEEEcCCHHHHHHHHHhcCcceEEECCCcCCCCCCCCcCCccccchh----------HHHhhheeEEEEE
Confidence 9999999999999999999999999999999999999864 4578999999999864 5799999999988
Q ss_pred CCC
Q 005131 691 GSG 693 (713)
Q Consensus 691 ~~~ 693 (713)
+..
T Consensus 470 ~~~ 472 (490)
T 3ju8_A 470 PVA 472 (490)
T ss_dssp EEE
T ss_pred ecc
Confidence 653
No 46
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.7e-75 Score=661.65 Aligned_cols=404 Identities=15% Similarity=0.115 Sum_probs=344.2
Q ss_pred HHHHhcCCcce-eEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHH
Q 005131 264 ILKVLQGERIG-TLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAA 342 (713)
Q Consensus 264 l~~~~tge~iG-T~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~ 342 (713)
+.++.||+.++ ++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++++++|+..+.+++|+
T Consensus 44 v~nP~tg~~i~~~~~~~~--------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 115 (528)
T 3v4c_A 44 TFASAPAHGPAHDFAVGT--------VELVNRACEAAEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGL 115 (528)
T ss_dssp EEECCCSSSCCCEEECCC--------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCC
T ss_pred ccCCCCCCEeeeEeCCCC--------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 44577899888 777664 999999999999999999999999999999999999999999999877777776
Q ss_pred HHHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccC--cccccc----ccccccCCceeeeeeccceeEEEEecC-Cch
Q 005131 343 AEQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MED--PIGHIL----KKTQLADGLFLEKTSCPLGVLLIVFES-RPD 414 (713)
Q Consensus 343 ~~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~--~~~~~~----~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~ 414 (713)
+..++ ..|+..+++.+++++. ..+ ..+... +.....++...+++++|+|||++|+|| ||+
T Consensus 116 ~~~~a------------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~ 183 (528)
T 3v4c_A 116 PEARL------------NGERGRTTGQLRLFADHIEKGDYLDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGASNFPL 183 (528)
T ss_dssp CHHHH------------HHHHHHHHHHHHHHHHHHHHCGGGCCEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSSTT
T ss_pred CHHHH------------HHHHHHHHHHHHHHHHHHhhccccccccccccccccCCCCCcceeEeeCCcEEEEECCCcchH
Confidence 65331 1578888888888876 322 111111 111011234567899999999999999 999
Q ss_pred HH--H-HHHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhcc-ccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCC
Q 005131 415 AL--V-QIAALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIP-ENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGS 489 (713)
Q Consensus 415 ~~--~-~~~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~-~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs 489 (713)
.+ + ++++|||++||+||+|||+.+|+|+.++++++.++|. .|+|+|+||+|+| +.++++.|..||+||+|+||||
T Consensus 184 ~~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~~l~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~V~fTGS 263 (528)
T 3v4c_A 184 AFSTAGGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFTGS 263 (528)
T ss_dssp TTSTTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhhhhhhHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECC
Confidence 86 3 8999999999999999999999999999999887644 3699999999998 4578898999999999999999
Q ss_pred HHHHHHHHHhc---C--CCeEEecCccceEEEcCCC---CHHHH-HHHHHHccCCCCCccccCceEEEcCC-CchhHHHH
Q 005131 490 NRLVSQIKEST---K--IPVLGHADGICHIYVDKSA---DMDMA-KQIVLDAKVDYPAACNAMETLLIHQD-LVPTGFNE 559 (713)
Q Consensus 490 ~~~g~~i~~~~---~--~~v~lElgG~~p~iV~~dA---Dl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~-i~d~fi~~ 559 (713)
+++|+.|++.+ . +|+++|||||||+||++|| |++.| ..+++++++|+||.|+|++|+|||++ +||+|+++
T Consensus 264 ~~~G~~i~~~aa~~~~~~pv~lElGGk~p~iV~~dAd~~dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~d~f~~~ 343 (528)
T 3v4c_A 264 LAGGRALFDLCAARPEPIPFFGELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNPGIAVVIEGADADRFTTA 343 (528)
T ss_dssp HHHHHHHHHHHHHSSSCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHGGGGCCTTCCCEEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHHhhccCCCceEEecCCCCeEEECCCCChhhHHHHHHHHHHHHHhcCCCccccCcEEEEecccHHHHHHHH
Confidence 99999999865 4 8999999999999999999 78888 56777888899999999999999998 99999999
Q ss_pred HHHHHH------------------------h-CCCEE-EcCCccccccC------C-CC---CCCccccccCceEEEEEe
Q 005131 560 LIDNLR------------------------S-EGVTL-YGGPRASSLLN------I-PE---PNSFHHEYNSMACTIEIV 603 (713)
Q Consensus 560 l~~~~~------------------------~-~Ga~l-~gg~~~~~~~~------v-~~---~~~~~eE~FgPvl~v~~~ 603 (713)
|++.+. + +|+++ +||...+.|+. + ++ |++++||+||||++|++|
T Consensus 344 l~~~~~~~~~~~~~gp~~~~~~~~~v~~~~~~~Ga~v~~gG~~~g~~~~PTvl~~~~~~~~~~~i~~eEiFGPVl~V~~~ 423 (528)
T 3v4c_A 344 AVEALAKVAPQTMLTDGIAKAYRDGQARFATRNAVKPLLATESSGRDASPNLFETTGAQFLADHALGEEVFGPLGLVVRV 423 (528)
T ss_dssp HHHHHHTCCCEECSCHHHHHHHHHHHHHHHTCTTCEEEECCCCCTTEECCEEEEEEHHHHHHCGGGGCCCSSSEEEEEEE
T ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCEEEeCCCcCCceeccEEEEecCcccccChhhcccccCCeEEEEec
Confidence 865442 2 79998 88876555553 2 34 899999999999999999
Q ss_pred CCHHHHHHHHHccCCCceeEEEcC--CHHHHHHHHhccC--eeeEEEcCCCC---CCCCCCccC-ccceeeccccCCCcc
Q 005131 604 DDVHAAIGHIHQHGSGHTDCIITN--DSEAAEIFLRQVD--SAAVFHNASTR---FCDGARFGL-GAEVGISTSRIHARG 675 (713)
Q Consensus 604 ~~~~eAi~~~N~~~~gL~a~v~t~--d~~~a~~~~~~l~--~G~v~iN~~~~---~~~~~pfGG-~k~SG~g~~~~~~~g 675 (713)
+|+||||+++|+++|||+++|||+ |.+++++++++++ +|+||||+++. ..+.+|||| +|.||+|+ +|.+|
T Consensus 424 ~~~deAi~~aN~~~~GL~a~v~t~d~d~~~a~~~a~~l~~~aG~V~vN~~~~~~~~~~~~pfGG~~~~Sg~gr--~~~~G 501 (528)
T 3v4c_A 424 GSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPVLERKAGRVLVNGFPTGVEVVDSMVHGGPYPASTNFG--ATSVG 501 (528)
T ss_dssp SSHHHHHHHHHHCCCEEEEEEECCGGGHHHHHHHHHHHHHHEEEEEESSCTTCCCCSTTCCCCCTTTTBSCTT--CCSSS
T ss_pred CCHHHHHHHHhcCCCCceEEEEcCCCCHHHHHHHHHHHhhcCcEEEEcCCCCCCccCCCCCCCCCCCCCCCCC--CCCCc
Confidence 999999999999999999999999 8999999999998 99999999643 347899999 99999998 33459
Q ss_pred cchHhhceeEEEEE
Q 005131 676 PVGVEGLLTTRWIL 689 (713)
Q Consensus 676 ~~~l~~~~~~k~v~ 689 (713)
++|+++|+++|++.
T Consensus 502 ~~gl~~~~~~k~~q 515 (528)
T 3v4c_A 502 TMSIRRFLRPVAYQ 515 (528)
T ss_dssp GGGGGGGEEEEEEE
T ss_pred HHHHHHhchhHHhh
Confidence 99999999999865
No 47
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=100.00 E-value=2e-75 Score=658.36 Aligned_cols=402 Identities=17% Similarity=0.184 Sum_probs=341.0
Q ss_pred HHhcCCcc-eeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHH
Q 005131 266 KVLQGERI-GTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAE 344 (713)
Q Consensus 266 ~~~tge~i-GT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~ 344 (713)
++.||+.+ +++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|+..+.+++|++.
T Consensus 13 nP~tg~~i~~~~~~~~--------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 84 (510)
T 1ez0_A 13 NAFTGEALPLAFPVHT--------EVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPE 84 (510)
T ss_dssp CTTTSSEEEEEEECCC--------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred CCCCCCEEEEEECCCC--------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 35689999 6877765 99999999999999999999999999999999999999999999988888777665
Q ss_pred HhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccC--ccccccc---cccccCC-ceeeeeeccceeEEEEecC-CchHH
Q 005131 345 QEGYEKPLLSRLALKSGKISSLANSVRVLAN-MED--PIGHILK---KTQLADG-LFLEKTSCPLGVLLIVFES-RPDAL 416 (713)
Q Consensus 345 ~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~--~~~~~~~---~~~~~~~-~~~~~~~~P~GVv~~I~p~-~P~~~ 416 (713)
.+. ..|+..+++.+++++. ..+ ..+.... ....+.+ ...+++++|+|||++|+|| ||+++
T Consensus 85 ~~a------------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 152 (510)
T 1ez0_A 85 VRL------------TGEIARTANQLRLFADVVNSGSYHQAILDTPNPTRAPLPKPDIRRQQIALGPVAVFGASNFPLAF 152 (510)
T ss_dssp HHH------------HHHHHHHHHHHHHHHHHHHHTGGGCEEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSCTTTT
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCceEEEecCcEEEEECCccchhhh
Confidence 331 1577788888888876 322 1111110 0000112 2357899999999999999 99986
Q ss_pred --H-HHHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhcc-ccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHH
Q 005131 417 --V-QIAALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIP-ENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNR 491 (713)
Q Consensus 417 --~-~~~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~-~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~ 491 (713)
+ ++++|||++||+||+|||+.+|+++.++++++.++|. .|+|+|+||+|+| +.++++.|..||+||+|+||||++
T Consensus 153 ~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~ 232 (510)
T 1ez0_A 153 SAAGGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVG 232 (510)
T ss_dssp STTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCSCTHHHHHHHHCTTCCEEEEESCHH
T ss_pred hhhHHHHHHHHHcCCEEEEECCCCchHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHcCCCCCEEEEeCcHH
Confidence 4 9999999999999999999999999999999987743 3799999999998 577889898999999999999999
Q ss_pred HHHHHHHhcC-----CCeEEecCccceEEEcCCCCHH--HH-HHHHHHccCCCCCccccCceEEEcCC-CchhHHHHHHH
Q 005131 492 LVSQIKESTK-----IPVLGHADGICHIYVDKSADMD--MA-KQIVLDAKVDYPAACNAMETLLIHQD-LVPTGFNELID 562 (713)
Q Consensus 492 ~g~~i~~~~~-----~~v~lElgG~~p~iV~~dADl~--~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~-i~d~fi~~l~~ 562 (713)
+|+.|++.+. ||+++|||||||+||++|||++ .| ..+++++|+|+||.|+|++|+|||++ +||+|+++|++
T Consensus 233 ~G~~i~~~aa~~l~~~pv~lELGGk~p~iV~~dADl~~~~aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~d~f~~~l~~ 312 (510)
T 1ez0_A 233 GGRALFNLAHERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQS 312 (510)
T ss_dssp HHHHHHHHHHHSSSCCCEEEECCCCCEEEECHHHHHHCTTHHHHHHHHHTGGGGCCTTCCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCccEEEECCCCCeEEEeCCCCccHHHHHHHHHHHHHcCCCCCcCCCCEEEEeCCccHHHHHHHHHH
Confidence 9999998642 9999999999999999999999 77 66777888899999999999999999 99999998843
Q ss_pred H------------------------HH-hCCCEE-EcCCccccccC--C-----CC---CCCccccccCceEEEEEeCCH
Q 005131 563 N------------------------LR-SEGVTL-YGGPRASSLLN--I-----PE---PNSFHHEYNSMACTIEIVDDV 606 (713)
Q Consensus 563 ~------------------------~~-~~Ga~l-~gg~~~~~~~~--v-----~~---~~~~~eE~FgPvl~v~~~~~~ 606 (713)
. ++ ++|+++ +||. .+.|+. | ++ |++++||+||||++|++|+|+
T Consensus 313 ~~~~~~~gp~~~~~~~~~~~~~v~~~~~~~Ga~~~~gg~-~g~~~~Ptvl~~~~~~~~~~~i~~eEiFGPVl~v~~~~~~ 391 (510)
T 1ez0_A 313 LIRQQSPSTLLTPGIRDSYQSQVVSRGSDDGIDVTFSQA-ESPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCENV 391 (510)
T ss_dssp HHHHCCCBCCSSHHHHHHHHHHHHHHHTSTTEEEEECCC-CTTSBCCEEEEEEHHHHHHCGGGGSCCCSSEEEEEEESSH
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEecCC-CCCEecCEEEEecCCccccCHHHcCCccCCeEEEEEeCCH
Confidence 3 33 369998 7876 455553 1 34 999999999999999999999
Q ss_pred HHHHHHHHccCCCceeEEEcCCH--HHHHHHHhcc--CeeeEEEcCCCC---CCCCCCccC-ccceeeccccCCCcccch
Q 005131 607 HAAIGHIHQHGSGHTDCIITNDS--EAAEIFLRQV--DSAAVFHNASTR---FCDGARFGL-GAEVGISTSRIHARGPVG 678 (713)
Q Consensus 607 ~eAi~~~N~~~~gL~a~v~t~d~--~~a~~~~~~l--~~G~v~iN~~~~---~~~~~pfGG-~k~SG~g~~~~~~~g~~~ 678 (713)
||||+++|+++|||++||||+|. ++++++++++ ++|+||||+++. ..+.+|||| +|.||+|+.+ ++|++|
T Consensus 392 deai~~aN~~~~gLaa~v~t~d~~~~~a~~~~~~l~~~aG~V~iN~~~~~~~~~~~~pfGG~~~~sG~g~~~--~~G~~g 469 (510)
T 1ez0_A 392 ADMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSAST--SVGAEA 469 (510)
T ss_dssp HHHHHHHHTCCCEEEEEEECCGGGHHHHHHHHHHHHTTEEEEEESSCSSCCCCSSSCCCCCSTTSCSCSSCC--SSSGGG
T ss_pred HHHHHHHhcCCCCeEEEEEccCcCHHHHHHHHHHHhhcccEEEECCCCccCccCCCCCCCCCCCCcCCCCCC--CccHHH
Confidence 99999999999999999999987 7999999999 899999998754 357899999 7999998632 469999
Q ss_pred HhhceeEEEEEE
Q 005131 679 VEGLLTTRWILK 690 (713)
Q Consensus 679 l~~~~~~k~v~~ 690 (713)
+++|+++|++..
T Consensus 470 l~~~~~~k~~~~ 481 (510)
T 1ez0_A 470 IHRWLRPVAYQA 481 (510)
T ss_dssp GGGGEEEEEEES
T ss_pred HHHhheEEEEcC
Confidence 999999998764
No 48
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=100.00 E-value=1e-74 Score=688.76 Aligned_cols=400 Identities=18% Similarity=0.182 Sum_probs=348.3
Q ss_pred HHHhc-CCcceeEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHH
Q 005131 265 LKVLQ-GERIGTLFHQDAHILDPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAA 343 (713)
Q Consensus 265 ~~~~t-ge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~ 343 (713)
.++.+ ++.+|++... +.+|+++|+++|++||+.|+++|+++|+++|++++++|++++++|+..+.++.|++
T Consensus 550 ~nPa~~~~~i~~v~~a--------~~~dv~~Av~aA~~A~~~W~~~~~~eRa~iL~~~Adll~~~~~eLa~~~~~E~GK~ 621 (1026)
T 4f9i_A 550 VNPNKPSEVLGQICQA--------GTTEVGDAIAAAKAAFPAWRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQ 621 (1026)
T ss_dssp EETTEEEEEEEEEECC--------CHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCC
T ss_pred eCCCCCCceEEEEeCC--------CHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555 6677776666 49999999999999999999999999999999999999999999997777777666
Q ss_pred HHhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHH
Q 005131 344 EQEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIA 420 (713)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~ 420 (713)
..++ ..|+..+++.+++|+. ..+..+...... ..+...+..++|+|||++|+|| ||+.++ +++
T Consensus 622 ~~ea------------~~Ev~~aid~lr~~a~~~~~~~~~~~~~~--~~g~~~~~~~~PlGVV~~I~PwNfPl~i~~~~~ 687 (1026)
T 4f9i_A 622 WDQA------------YADVTEAIDFLEYYAREMIRLGQPQRVGH--APGELNHYFYEPKGVAAVIAPWNFPLAISMGMA 687 (1026)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHHHHHHHTSCEEECC--CTTEEEEEEEEECSEEEEECCSSSTTHHHHHHH
T ss_pred hhhH------------HHHHHHHHHHHHHHHHHHHHhcCCccccC--CCCccceeEeecCceEEEeCCCccHHHHHHHHH
Confidence 5442 1688999999999987 333222221111 2456778899999999999999 999985 999
Q ss_pred HHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhccccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHh
Q 005131 421 ALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKES 499 (713)
Q Consensus 421 ~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 499 (713)
++||++||+||+|||+.||+++..+++++.++ |+|+|+||+|+| +.++++.|..||+|++|+||||+++|+.|++.
T Consensus 688 a~ALaaGNtVVlKPse~tplsa~~l~ell~eA---GlP~gvvnvV~G~g~~vg~~L~~hp~v~~V~FTGSt~vg~~I~~~ 764 (1026)
T 4f9i_A 688 SAAIVTGNCVVFKPSGITSIIGWHLVELFREA---GLPEGVFNFTPGRGSVMGDYLVDHPDISLIAFTGSMETGLRIIER 764 (1026)
T ss_dssp HHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT---TCCTTSEEECCCCHHHHHHHHHHCTTEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEcCccchHHHHHHHHHHHHh---CcCCCeEEEEecCcHHHHHHHHhCCCCCEEEeCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999998 46789999999999999999999999999876
Q ss_pred cC---------CCeEEecCccceEEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH--------
Q 005131 500 TK---------IPVLGHADGICHIYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI-------- 561 (713)
Q Consensus 500 ~~---------~~v~lElgG~~p~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~-------- 561 (713)
+. +|+++|+|||||+||++|||++.| ..++.++|.|+||.|+|++|+|||+++||+|+++|+
T Consensus 765 aa~~~~~~~~lkpv~lElGGknp~IV~~dADld~Aa~~iv~saf~~aGQ~C~A~~rl~V~~~i~d~f~~~L~~~~~~l~v 844 (1026)
T 4f9i_A 765 AAKVHPGQANVKKIISEMGGKNAIIIDDDADLDEAVPHVLYSAFGFQGQKCSACSRVIVLDAVYDKFIERLVSMAKATKV 844 (1026)
T ss_dssp HTSCCTTCCSCCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGHHHHHHHHHHHHHHCCB
T ss_pred hhcccccccCccceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCCCCCCceEEecHHHHHHHHHHHHHHHHhccc
Confidence 43 899999999999999999999999 567777888999999999999999999999999873
Q ss_pred --------------------------HHHHhCCCEE-EcCCcc---ccccC------C-CCCCCccccccCceEEEEEeC
Q 005131 562 --------------------------DNLRSEGVTL-YGGPRA---SSLLN------I-PEPNSFHHEYNSMACTIEIVD 604 (713)
Q Consensus 562 --------------------------~~~~~~Ga~l-~gg~~~---~~~~~------v-~~~~~~~eE~FgPvl~v~~~~ 604 (713)
++++++| ++ +||... +.|+. + ++|++++||+||||++|++|+
T Consensus 845 G~p~d~~t~~Gpvi~~~~~~~v~~~i~~a~~~G-~~v~gG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~ 923 (1026)
T 4f9i_A 845 GPSEDPANYMGAVADDKAMKSIKEYAEIGKREG-HVLYESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAK 923 (1026)
T ss_dssp CCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHHS-EEEEECCCCSSSSCCCCCEEEESCCTTSGGGTSCCCSSEEEEEEES
T ss_pred CCcccccCccccccCHHHHHHHHHHHHHHHhCC-eEEecCCcCCCCCceecceeeecCCCCccccCceecCcEEEEEEeC
Confidence 4455667 66 787542 44542 4 789999999999999999999
Q ss_pred CHHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccCeeeEEEcCCCC--CCCCCCccCccceeeccccCCCcccchHhhc
Q 005131 605 DVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVDSAAVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGL 682 (713)
Q Consensus 605 ~~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~--~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~ 682 (713)
|+||||+++|+++|||+++|||+|.+++.++++++++|+||||+.+. ....+||||+|.||+|+. ++|++++++|
T Consensus 924 d~deAI~~aN~t~yGLt~~V~t~d~~~a~~~~~~l~aG~v~IN~~~~~~~~~~~PFGG~k~SG~G~~---~gG~~~l~~f 1000 (1026)
T 4f9i_A 924 DFDQAIEWANSTQFALTGGIFSRSPEHLAKARREFRVGNLYINRNNTGALVERQPFGGARMSGVGTK---AGGPDYLLHF 1000 (1026)
T ss_dssp SHHHHHHHHTCSSCCSEEEEECCCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCCGGGBSSCC---BTSTTTGGGG
T ss_pred CHHHHHHHHHcCCCCCeEEEECCCHHHHHHHHHhCCEeeEEEcCCCCCCCCCCCCCCCcCcCCCCCC---cCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999743 347899999999999952 7899999999
Q ss_pred eeEEEEEECCC
Q 005131 683 LTTRWILKGSG 693 (713)
Q Consensus 683 ~~~k~v~~~~~ 693 (713)
+++|+|..+..
T Consensus 1001 ~~~k~v~~~~~ 1011 (1026)
T 4f9i_A 1001 MDPRVVTENTM 1011 (1026)
T ss_dssp EEEEEEEEECC
T ss_pred ceEEEEEEecc
Confidence 99999998764
No 49
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=100.00 E-value=2.2e-73 Score=645.11 Aligned_cols=393 Identities=15% Similarity=0.134 Sum_probs=331.3
Q ss_pred HHhcCCcceeEEecCCCCCCCCCHHHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHH
Q 005131 266 KVLQGERIGTLFHQDAHILDPFNEVGAREMAVAARES-SRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAE 344 (713)
Q Consensus 266 ~~~tge~iGT~i~~~~~~~~~~t~~~v~~av~~A~~a-~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~ 344 (713)
++.||+.++++... + +|+++|+++|++| |+.|+++++++|.++|++++++|++|+++|+..+.+++|++.
T Consensus 28 nP~tg~~i~~~~~~--------~-~dv~~Av~aA~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 98 (534)
T 2y53_A 28 DPVTGVALVRVSSE--------G-LDLARAFSFAREDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTR 98 (534)
T ss_dssp CTTTCCEEEEECCT--------T-CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred CCCCCCEEEEEeCC--------H-HHHHHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 46688888876442 3 7999999999999 599999999999999999999999999999988777777766
Q ss_pred HhcCchhhHhHhhcCHHHHHHHHHHHHHHhc-ccCccc-------cccccccccCCceeeeeeccc-eeEEEEecC-Cch
Q 005131 345 QEGYEKPLLSRLALKSGKISSLANSVRVLAN-MEDPIG-------HILKKTQLADGLFLEKTSCPL-GVLLIVFES-RPD 414 (713)
Q Consensus 345 ~~~~~~~~~~~l~~~~~ev~~~~~~l~~~a~-~~~~~~-------~~~~~~~~~~~~~~~~~~~P~-GVv~~I~p~-~P~ 414 (713)
.++ ..|+..+++.+++|+. ..+..+ +..+.. .+.....+..++|+ |||++|+|| ||+
T Consensus 99 ~ea------------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~P~~GVv~~I~PwN~P~ 165 (534)
T 2y53_A 99 NDS------------AVDIDGGIFTLSYYAKLGASLGEVHALRDGSAESLS-KDRSFSAQHVLSPTRGVALFINAFNFPS 165 (534)
T ss_dssp HHH------------HHHHHHHHHHHHHHHHHHHTTCSCSEEEEEEEEECS-TTSSEEEEEEEEECSSCEEEECCTTCTT
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHhccccccccCCccccCC-CCCcccceEEEecCCCEEEEECCCchHH
Confidence 441 1477888888888886 333211 111110 01223467889997 999999999 999
Q ss_pred HHH-HHHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhcccc-CCCCeEEEecCC-chhHHhhhcCCCccEEEecCCHH
Q 005131 415 ALV-QIAALAIRSGNGLLLKGGKEAKRSNAILHKIITEVIPEN-VGERLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNR 491 (713)
Q Consensus 415 ~~~-~~~~~ALaaGN~vv~Kps~~~~~~~~~l~~~~~~al~~g-lP~g~v~vv~g~-~~~~~~l~~~~~v~~v~fTGs~~ 491 (713)
.++ ++++|||++||+||+|||+.||+++..+++++.++ | +|+|+||+|+|+ .++++.| +++|+|+||||++
T Consensus 166 ~~~~~~~a~ALaaGN~VVlKPs~~tp~~~~~l~~l~~~a---G~lP~gvv~vv~g~~~~l~~~l---~~vd~V~FTGS~~ 239 (534)
T 2y53_A 166 WGLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDA---GILPPGALSIICGSSAGLLDQI---RSFDVVSFTGSAD 239 (534)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHHHHH---TCSCTTSEEECCSCCTTSGGGC---CTTCEEEEESCHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHh---CCCCCCeEEEEeCChHHHHhcc---cccCEEEEECCHH
Confidence 885 99999999999999999999999999999999999 9 799999999974 3333332 5799999999999
Q ss_pred HHHHHHHhc-----CCCeEEecCccceEEEcCCC-----CHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHH
Q 005131 492 LVSQIKEST-----KIPVLGHADGICHIYVDKSA-----DMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNEL 560 (713)
Q Consensus 492 ~g~~i~~~~-----~~~v~lElgG~~p~iV~~dA-----Dl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l 560 (713)
+|+.|++.+ .||+++|||||||+||++|| |++.| ..+++++|+|+||.|++++|+|||+++||+|+++|
T Consensus 240 ~G~~i~~~aa~a~~~k~v~lELGGk~p~iV~~dA~~~~~Dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l 319 (534)
T 2y53_A 240 TAATLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAIRRAFVPEAALEPVLEAL 319 (534)
T ss_dssp HHHHHHTSHHHHTTCCEEEEECCCCEEEEECTTCCTTSHHHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCCcEEEEcCCCCeEEECCCccccccCHHHHHHHHHHHHHhCCCCcccCCCEEEEeccHHHHHHHHH
Confidence 999999753 69999999999999999999 99999 56777888899999999999999999999999988
Q ss_pred H----------------------------------HHHHhCCCEE-EcCCc---------cccccC------C-CC--CC
Q 005131 561 I----------------------------------DNLRSEGVTL-YGGPR---------ASSLLN------I-PE--PN 587 (713)
Q Consensus 561 ~----------------------------------~~~~~~Ga~l-~gg~~---------~~~~~~------v-~~--~~ 587 (713)
+ +++ ++|+++ +||.. .+.|+. + ++ |+
T Consensus 320 ~~~~~~~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a-~~ga~~~~GG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~~~ 398 (534)
T 2y53_A 320 KAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAAL-REEAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATL 398 (534)
T ss_dssp HHHHTTCCBBCTTSTTCSBCCCSCHHHHHHHHHHHHHH-HTSSEEEEECTTSCCBSCCTTTSCCCCCEEEECSCGGGCSS
T ss_pred HHHHHhccCCCCCcCCCCccCCCCHHHHHHHHHHHHHH-HcCCEEEECCcccccccccCCCCceecCEEEEecCccccCH
Confidence 3 334 478998 78753 244542 3 33 68
Q ss_pred CccccccCceEEEEEeC---CH-----HHHHHHHHccCCCceeEEEcCCHHHHHHHHhcc--CeeeEEEcCCCC------
Q 005131 588 SFHHEYNSMACTIEIVD---DV-----HAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQV--DSAAVFHNASTR------ 651 (713)
Q Consensus 588 ~~~eE~FgPvl~v~~~~---~~-----~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l--~~G~v~iN~~~~------ 651 (713)
+++||+||||++|++|+ |+ ||||+++|+++|||++||||+|.++++++++++ ++|+||||+++.
T Consensus 399 i~~eEiFGPVl~v~~~~~~~~~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~~aG~V~vN~~~~~~~~~~ 478 (534)
T 2y53_A 399 LHDVEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSLVASIYSNDDAHLGRLALELADSHGRVHAISPSVQHSQTG 478 (534)
T ss_dssp TTTCCCSSSEEEEEEECCCCC---CTTHHHHHHHHTTSSEEEEEEECSCHHHHHHHHHHHTTTEEEEEEECGGGTTTCCC
T ss_pred HHhCCCcCCEEEEEEECCCCCcccCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHHHHhhCCEEEEcCCcccccccc
Confidence 99999999999999999 99 999999999999999999999999999999999 899999998642
Q ss_pred ---CCCCCCccCccceeeccccCCC-cccchHhhceeEEEEEEC
Q 005131 652 ---FCDGARFGLGAEVGISTSRIHA-RGPVGVEGLLTTRWILKG 691 (713)
Q Consensus 652 ---~~~~~pfGG~k~SG~g~~~~~~-~g~~~l~~~~~~k~v~~~ 691 (713)
..+.+||||+|+||+|+ + +|++|+++|+++|+|...
T Consensus 479 ~~~~~~~~pfGG~k~SG~Gr----~~~g~~~l~~~~~~k~v~~~ 518 (534)
T 2y53_A 479 HGNVMPMSLHGGPGRAGGGE----ELGGLRALAFYHRRSAIQAA 518 (534)
T ss_dssp SSCCCTTSEECCSGGGCSCC----EESGGGGGGGGEEEEEEEEE
T ss_pred cCCCCCCCCCCCcccCCCCC----CcchHHHHHHHhhhheeecC
Confidence 24789999999999999 7 799999999999999864
No 50
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=100.00 E-value=5e-73 Score=672.86 Aligned_cols=389 Identities=17% Similarity=0.171 Sum_probs=338.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHHhcCchhhHhHhhcCHHHHH
Q 005131 285 DPFNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQEGYEKPLLSRLALKSGKIS 364 (713)
Q Consensus 285 ~~~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ev~ 364 (713)
...+.+|+++|+++|++||+.|+++|+++|.++|++++++|++++++|+..+.++.|++..++ ..|+.
T Consensus 545 ~~a~~~dv~~Av~aA~~A~~~W~~~~~~eR~~iL~~~ad~l~~~~~eLa~~~~~E~GK~~~ea------------~~Ev~ 612 (1001)
T 3haz_A 545 ADATPDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDDA------------LSELR 612 (1001)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHH------------HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHH------------HHHHH
Confidence 345799999999999999999999999999999999999999999999987777777665442 26899
Q ss_pred HHHHHHHHHhc-ccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHHHHHhCCEEEEeCCCCchHH
Q 005131 365 SLANSVRVLAN-MEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAALAIRSGNGLLLKGGKEAKRS 441 (713)
Q Consensus 365 ~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ALaaGN~vv~Kps~~~~~~ 441 (713)
.+++.+++|+. .....+...... ...+...++.++|+|||++|+|| ||+.++ +++++||++||+||+|||+.||++
T Consensus 613 ~ai~~lr~~a~~a~~~~g~~~~~~-~~~g~~~~~~~~P~GVV~~I~PwNfPl~i~~~~va~ALAAGNtVVlKPse~tp~t 691 (1001)
T 3haz_A 613 EAADFCRYYAAQGRKLFGSETAMP-GPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRI 691 (1001)
T ss_dssp HHHHHHHHHHHHHHHHHSSCEECC-CCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHH
T ss_pred HHHHHHHHHHHHHHhhcCcccccc-CCCCCceEEEEeCCcEEEEEcCCCChHHHHHHHHHHHHHcCCEEEEecchhhHHH
Confidence 99999999997 333222221111 12466788899999999999999 999985 999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCeEEEecCCchhHHhhhcCCCccEEEecCCHHHHHHHHHhc------CCCeEEecCccceEE
Q 005131 442 NAILHKIITEVIPENVGERLIGLVTSREEIPDLLKLDDVIDLVIPRGSNRLVSQIKEST------KIPVLGHADGICHIY 515 (713)
Q Consensus 442 ~~~l~~~~~~al~~glP~g~v~vv~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~------~~~v~lElgG~~p~i 515 (713)
+..+++++.++ |+|+|+||+|+|....++.|..||+||+|+||||+++|+.|++.+ .+|+++|+|||||+|
T Consensus 692 a~~l~ell~eA---GlP~gvv~vV~G~g~~g~~L~~~p~Vd~V~FTGSt~vGr~I~~~aA~~~~~l~pv~lElGGknp~I 768 (1001)
T 3haz_A 692 AREAVALLHEA---GIPKSALYLVTGDGRIGAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMI 768 (1001)
T ss_dssp HHHHHHHHHHH---TCCTTTEEECCCCHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHHHHSSSCCCCEEEECCCCEEEE
T ss_pred HHHHHHHHHHh---CcCcCcEEEEecCchHHHHHHhCCCcCEEEecCCHHHHHHHHHHHhcccCCCceEEeecCCcceEE
Confidence 99999999999 999999999998533389999999999999999999999998752 599999999999999
Q ss_pred EcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHH---------------------------------
Q 005131 516 VDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELI--------------------------------- 561 (713)
Q Consensus 516 V~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~--------------------------------- 561 (713)
|++|||++.| ..+++++|+|+||.|+|++|||||+++||+|+++|+
T Consensus 769 V~~dADld~Aa~~iv~s~f~naGQ~C~A~~rllV~e~i~d~f~~~L~~~~~~l~vGdp~d~~t~~Gpli~~~~~~rv~~~ 848 (1001)
T 3haz_A 769 ADATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAH 848 (1001)
T ss_dssp ECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHHHHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHhCCCCCCCCCceeeccHHHHHHHHHHHHHHHHhcCCCCcccccCccCCCCCHHHHHHHHHH
Confidence 9999999999 567778888999999999999999999999999873
Q ss_pred -HHHHhCCCEEEcCCcc--ccccC-----CCCCCCccccccCceEEEEEeCC--HHHHHHHHHccCCCceeEEEcCCHHH
Q 005131 562 -DNLRSEGVTLYGGPRA--SSLLN-----IPEPNSFHHEYNSMACTIEIVDD--VHAAIGHIHQHGSGHTDCIITNDSEA 631 (713)
Q Consensus 562 -~~~~~~Ga~l~gg~~~--~~~~~-----v~~~~~~~eE~FgPvl~v~~~~~--~~eAi~~~N~~~~gL~a~v~t~d~~~ 631 (713)
++++++| +++||... +.|+. ++++.+++||+||||++|++|++ +||||+++|+++|||+++|||+|.++
T Consensus 849 i~~a~~~g-~v~gg~~~~~G~fv~PTvl~~~~~~~~~eEiFGPVL~V~~~~~~~ldeAI~~aN~t~yGLta~V~T~d~~~ 927 (1001)
T 3haz_A 849 IARMKTEA-RLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDS 927 (1001)
T ss_dssp HHHHHHHS-EEEEECCCCSSSCCCCEEEECSSGGGCCSCCCSSEEEEEEECGGGHHHHHHHHHHTCCCSEEEEECSCHHH
T ss_pred HHHHHhcC-eEeccccCCCCcEEeeEEecCCCHHHHhccccCcEEEEEEeCCCCHHHHHHHHHcCCCCceEEEEcCCHHH
Confidence 4455566 66666542 44553 27888999999999999999996 89999999999999999999999999
Q ss_pred HHHHHhccCeeeEEEcCCCCC--CCCCCccCccceeeccccCCCcccchHhhceeEEEEEECCC
Q 005131 632 AEIFLRQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSG 693 (713)
Q Consensus 632 a~~~~~~l~~G~v~iN~~~~~--~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~~~ 693 (713)
+.++++++++|+||||+++.. .+.+||||+|.||+|+. ++|++|+++|++.|+|+++..
T Consensus 928 a~~~a~~l~aG~V~VN~~~~~~~~~~~PFGG~k~SG~G~~---~gG~~gl~~ft~~K~v~~~~~ 988 (1001)
T 3haz_A 928 IEAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGPK---AGGPHYLARFATEQTVTINTA 988 (1001)
T ss_dssp HHHHHHHCCCSEEEESSCSCCCCTTTSCBCCCGGGBCCCC---BTSTTSGGGGEEEEEEEEECG
T ss_pred HHHHHHhCCeeeEEEeCCCcCCCCCCCCCCCcccCcCCCC---CCCHHHHHHhceeeEEEECCc
Confidence 999999999999999998543 36789999999999951 789999999999999998754
No 51
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-69 Score=603.64 Aligned_cols=381 Identities=18% Similarity=0.218 Sum_probs=320.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHHhcCchhhHhHhhcCHHHHHHHH
Q 005131 288 NEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQEGYEKPLLSRLALKSGKISSLA 367 (713)
Q Consensus 288 t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ev~~~~ 367 (713)
+.+|+++++++|++||+.|++++.++|.++|++++++|++++++|+....+++|++..+. + ..+....+
T Consensus 10 ~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~e~-------~----~~~~~~~~ 78 (464)
T 3k9d_A 10 SIQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGIWQD-------K----VIKNVFAS 78 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSCHHH-------H----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCHHHH-------H----HHHHHHHH
Confidence 478999999999999999999999999999999999999999999988888887665331 0 02344556
Q ss_pred HHHHHHhcccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHHHHHhCCEEEEeCCCCchHHHHHH
Q 005131 368 NSVRVLANMEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAALAIRSGNGLLLKGGKEAKRSNAIL 445 (713)
Q Consensus 368 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ALaaGN~vv~Kps~~~~~~~~~l 445 (713)
+.+..|+...+..+.... ..+...+++++|+|||++|+|| ||+.++ +++++||++||+||+||||.+|.|+..+
T Consensus 79 ~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVlKps~~ap~t~~~l 154 (464)
T 3k9d_A 79 KHVYNYIKDMKTIGMLKE----DNEKKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILET 154 (464)
T ss_dssp HHHHHHHTTCCCSEEEEE----ETTTTEEEEEEECCEEEEEECSSSHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH
T ss_pred HHHHHhhhcccccceecc----CCCceeEEEEecceEEEEECCCcChHHHHHHHHHHHHHhCCeEEEECCcchHHHHHHH
Confidence 666666653333332211 2456778899999999999999 999985 9999999999999999999999999999
Q ss_pred HHHHHHhccc-cCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHhcCCCeEEecC-ccceEEEcCCCCH
Q 005131 446 HKIITEVIPE-NVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKESTKIPVLGHAD-GICHIYVDKSADM 522 (713)
Q Consensus 446 ~~~~~~al~~-glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~~~~v~lElg-G~~p~iV~~dADl 522 (713)
++++.+++.+ |+|+|+||+|+| +.+.++.|..||+||+|+||||+++.++.++ .+||+ +|+| ||||+||++|||+
T Consensus 155 ~~ll~~~~~~aG~P~gvv~vv~g~~~~~~~~L~~~~~vd~I~fTGs~~v~~~a~~-~~kpv-lelG~G~~p~iV~~dADl 232 (464)
T 3k9d_A 155 VRIISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAAYS-SGTPA-IGVGPGNGPAFIERSANI 232 (464)
T ss_dssp HHHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTEEEEEECSCHHHHHHHTT-SSSCE-EEBCCCCCEEEECTTSCH
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCChHHHHHHHh-cCCcE-EeeCCCCCeEEECCCCCH
Confidence 8888777554 599999999998 4678888888999999999999998777654 48999 7888 9999999999999
Q ss_pred HHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHHHH-------------------------------------
Q 005131 523 DMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDNL------------------------------------- 564 (713)
Q Consensus 523 ~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~~~------------------------------------- 564 (713)
+.| ..+++++++|+||.|+|++|||||+++||+|+++|++..
T Consensus 233 ~~Aa~~i~~~~~~n~Gq~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~gp~i~~~~~~~i~~ 312 (464)
T 3k9d_A 233 PRAVKHILDSKTFDNGTICASEQSVVVERVNKEAVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSMNPAIVGKSVQHIAN 312 (464)
T ss_dssp HHHHHHHHHHHTGGGGCSTTSCCEEEEEHHHHHHHHHHHHHTTEEECCHHHHHHHHHHHBCTTSCBCGGGTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCCCCcEEEEeHHHHHHHHHHHHHhhhhhcChhhhhhhcccccCCCCccCcccCHHHHHHHHH
Confidence 999 567788899999999999999999999999999886531
Q ss_pred -----HhCCCEE-EcCCccccccCC-CCCCCccccccCceEEEEEeCCHHHHH----HHHHccCCCceeEEEcCCHHHHH
Q 005131 565 -----RSEGVTL-YGGPRASSLLNI-PEPNSFHHEYNSMACTIEIVDDVHAAI----GHIHQHGSGHTDCIITNDSEAAE 633 (713)
Q Consensus 565 -----~~~Ga~l-~gg~~~~~~~~v-~~~~~~~eE~FgPvl~v~~~~~~~eAi----~~~N~~~~gL~a~v~t~d~~~a~ 633 (713)
+.+|+++ +||.. ++ ++++ +.||+||||++|++|+|+|||| +++|+++|||+++|||+|.++++
T Consensus 313 ~~~~a~~~ga~vl~gg~~-----~v~~~~~-~~~E~fgPVl~v~~~~~~~eAi~~ai~~~n~~~~gl~a~i~t~d~~~a~ 386 (464)
T 3k9d_A 313 LAGLTVPADARVLIAEET-----KVGAKIP-YSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIR 386 (464)
T ss_dssp HTTCCCCTTCCEEEEECC-----CCSTTCG-GGSCCCSSEEEEEEESSHHHHHHHHHHHHHHTTTEEEEEEECSCHHHHH
T ss_pred HhhhhhcCCCEEEEcCCC-----CCCCCCc-ccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEeCCHHHHH
Confidence 0123444 33321 24 4555 5589999999999999999997 79999999999999999999999
Q ss_pred HHHhccCeeeEEEcCCCC---------CCCCCCccCccceeeccccCCCcccchHhhceeEEEEEECCCeee
Q 005131 634 IFLRQVDSAAVFHNASTR---------FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSGQVV 696 (713)
Q Consensus 634 ~~~~~l~~G~v~iN~~~~---------~~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~~~~~~ 696 (713)
+|++++++|+|+||+++. ..+.+||||+ .+|.|+ .+|..|+++|++.|+|.++..+..
T Consensus 387 ~~~~~l~~G~v~vN~~~~~~~~g~~~~~~~~~~~G~G-~~G~g~----~~~~~~~~~~~~~k~v~~~~~~~~ 453 (464)
T 3k9d_A 387 EFALKKPVSRLLVNTPGALGGIGATTNLVPALTLGCG-AVGGSS----SSDNIGPENLFNIRRIATGVLELE 453 (464)
T ss_dssp HHHHHSSEEEEEESSCHHHHHTTSSSSSCCCSCBBCT-GGGTCS----CCSBCCGGGSEEEEEEEECCCCHH
T ss_pred HHHHhCCEeEEEEECCccccccccCCCCCccccccCc-CCCCCc----CCCCCCHHHheEEEEEEecCCchh
Confidence 999999999999999854 5689999994 578887 779999999999999999876544
No 52
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=100.00 E-value=7e-66 Score=572.70 Aligned_cols=383 Identities=17% Similarity=0.236 Sum_probs=300.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHhhHHHHHHHhcCchhhHhHhhcCHHHHHHH
Q 005131 287 FNEVGAREMAVAARESSRRLQAMSSEDRKKILLDIADALEANEELIIEENEADVAAAEQEGYEKPLLSRLALKSGKISSL 366 (713)
Q Consensus 287 ~t~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ev~~~ 366 (713)
.+.+|+++++++|++||+.|++++.++|.++|++++++|++++++|+.....++|++..+.. ..++..+
T Consensus 4 a~~~~v~~av~~A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~e~Gk~~~e~~-----------~~~~~~a 72 (452)
T 3my7_A 4 TNMAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGIVEDK-----------VIKNHFA 72 (452)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSCHHHH-----------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHH-----------HHHHHHH
Confidence 46899999999999999999999999999999999999999999999877777776654310 0245566
Q ss_pred HHHHH-HHhcccCccccccccccccCCceeeeeeccceeEEEEecC-CchHHH-HHHHHHHHhCCEEEEeCCCCchHHHH
Q 005131 367 ANSVR-VLANMEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES-RPDALV-QIAALAIRSGNGLLLKGGKEAKRSNA 443 (713)
Q Consensus 367 ~~~l~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~-~P~~~~-~~~~~ALaaGN~vv~Kps~~~~~~~~ 443 (713)
++.+. +++. .+..+.... ..+...+..++|+|||++|+|| ||+.++ ++++|||++||+||+||||.+|.++.
T Consensus 73 ~~~~~~~~~~-~~~~g~~~~----~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~k~~~ALaaGN~VVlKps~~tp~~~~ 147 (452)
T 3my7_A 73 SEFIYNKYKD-EQTCGILEE----DDNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSPHPRAKNSTN 147 (452)
T ss_dssp HHHHHHHHTT-CCCSEEC-----------CEEEEEECCEEEEEECTTSTTHHHHHHHHHHHHTTCEEEEEECGGGHHHHH
T ss_pred HHHHHHHhhh-ccccccccC----CCCCceEEEecCceEEEEEcCCCChHHHHHHHHHHHHhcCCeEEEEcCCCchHHHH
Confidence 66663 4433 222222211 1344567899999999999999 999985 99999999999999999999999999
Q ss_pred HHHHHHHHhcc-ccCCCCeEEEecC-CchhHHhhhcCCCccEEEecCCHHHHHHHHHhcCCCeEEecCccceEEEcCCCC
Q 005131 444 ILHKIITEVIP-ENVGERLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNRLVSQIKESTKIPVLGHADGICHIYVDKSAD 521 (713)
Q Consensus 444 ~l~~~~~~al~-~glP~g~v~vv~g-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~~~~~v~lElgG~~p~iV~~dAD 521 (713)
.+++++.+++. .|+|+|+||+|+| +.++++.|..||+||+|+||||++++++.++ .+||+++|+|||||+||++|||
T Consensus 148 ~~~~~~~~a~~~aG~P~gvv~~v~g~~~~~~~~L~~~p~v~~V~fTGs~~~~~~a~~-~~kp~~~e~gG~~p~iV~~dAD 226 (452)
T 3my7_A 148 DAAKLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDDIALILATGGPGMVKAAYS-SGKPAIGVGAGNVPVVIDETAD 226 (452)
T ss_dssp HHHHHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTCCEEEECSCHHHHHHHHT-SSSCEEECC--CEEEEECTTSC
T ss_pred HHHHHHHHHHHHcCCCcCcEEEEcCCCHHHHHHHHhCCCccEEEEECcHHHHHHHHh-cCCCEEecCCCCCeEEEeCCCC
Confidence 99999987644 3699999999998 5678888888999999999999999887654 4899999999999999999999
Q ss_pred HHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHH---------------HHHh----CCCEEEcCCcc----
Q 005131 522 MDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELID---------------NLRS----EGVTLYGGPRA---- 577 (713)
Q Consensus 522 l~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~---------------~~~~----~Ga~l~gg~~~---- 577 (713)
++.| ..+++++++|+||.|+|++|+|||+++||+|+++|++ ..+. .|++++||...
T Consensus 227 l~~Aa~~iv~s~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~gpli~~~~~~~v~~~i~~~~~~~a~v~G~~~~~~~~ 306 (452)
T 3my7_A 227 IKRAVASVLMSKTFDNGVVCASEQAVIVVDEVYDEVKERFASHKAHVLSKTDADKVRKVLLIDGALNAKIVGQPATAIAE 306 (452)
T ss_dssp HHHHHHHHHHGGGGGGGCCTTCEEEEEEEGGGHHHHHHHHHTTTEEECCHHHHHHHHHHHEETTEECGGGTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCccCCCcEEEEcHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhhcccCCeEecCccchhHH
Confidence 9999 5677888899999999999999999999999998852 2222 24555666431
Q ss_pred --cccc-------------CC-CCCCCccccccCceEEEEEeCCHHHHHHHHHccC----CCceeEEEcCCHHHHHH---
Q 005131 578 --SSLL-------------NI-PEPNSFHHEYNSMACTIEIVDDVHAAIGHIHQHG----SGHTDCIITNDSEAAEI--- 634 (713)
Q Consensus 578 --~~~~-------------~v-~~~~~~~eE~FgPvl~v~~~~~~~eAi~~~N~~~----~gL~a~v~t~d~~~a~~--- 634 (713)
+.|+ ++ ++++++ +|+||||++|++|+|+||||+++|++. |||+++|||+|.+++++
T Consensus 307 ~~G~~v~pt~~vl~~~~~~~v~~~~~~~-~E~FgPVl~v~~~~~~~eAi~~an~~~~~~g~Glta~i~t~d~~~a~~i~~ 385 (452)
T 3my7_A 307 MAGVKVPADTKVLIGEGLGKVSYDDAFA-HEKLSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRY 385 (452)
T ss_dssp HHTCCCCTTCCEEEEECSSSCCTTCGGG-SCCSSSEEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEESCTTTCHHHHHH
T ss_pred hCCceeCCCeeEEeeccccCCCCcchhh-cCccCcEEEEEEeCCHHHHHHHHHhcccccCCCCEEEEEcCCHHHHHHHHH
Confidence 2222 23 456655 489999999999999999999999985 99999999999888877
Q ss_pred HHhccCeeeEEEcCCCCC-----------CCCCCccCccceeeccccCCCcccchHhhceeEEEEEECC
Q 005131 635 FLRQVDSAAVFHNASTRF-----------CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGS 692 (713)
Q Consensus 635 ~~~~l~~G~v~iN~~~~~-----------~~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~~~ 692 (713)
|++++++|+|+||+++.+ .+.+++|+..+.|.. ..+..+.++|.+.|+|..+.
T Consensus 386 ~a~~l~~G~V~VN~~~~~Gg~G~~~~f~~~~~~t~g~g~~Gg~~-----~~~nv~~~~l~n~~~v~~~~ 449 (452)
T 3my7_A 386 FGDKMKTARILINIPTTHGGIGDLYNFNVAPSLTLGCGSWGGNS-----ISENVGPKHLINKKTVAKRA 449 (452)
T ss_dssp HHHHCCCSEEEESCCCC---------------------------------CCCCCGGGGEEEEEEECCC
T ss_pred HHHhCCEEEEEECCCCCCcccccccccCcCceEeeeccccCCCc-----cCCCCChhHeeeeeEEEeec
Confidence 999999999999997533 234556655554444 34679999999999998764
No 53
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=100.00 E-value=8.6e-38 Score=335.11 Aligned_cols=255 Identities=37% Similarity=0.557 Sum_probs=185.5
Q ss_pred hhccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccc
Q 005131 8 VKDVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIEL 87 (713)
Q Consensus 8 ~~~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l 87 (713)
|.+++++|||||||+|+++++++|.+.+..++++|+.+++.|+++||||||+.+.|+..+... . . ...+.
T Consensus 1 ~~~~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGgi~~g~~~lg~~---~-~-----~~~l~- 70 (367)
T 2j5v_A 1 MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYP---E-L-----PATIA- 70 (367)
T ss_dssp --CCCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTSC---C-C-----CSSHH-
T ss_pred CCCCCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHcCCC---C-C-----CCCHH-
Confidence 345789999999999998777899999999999999999999999999999988887543321 1 1 11112
Q ss_pred hHHHHHHcchHHHHHHHHHHhhhcCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCC
Q 005131 88 DGKACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSS 167 (713)
Q Consensus 88 ~~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~ 167 (713)
..+++.++||..+..++...|.+.|+++.+++++.+|+.....+.+..+.++.+|+.|.|||++++|.|..++
T Consensus 71 ~~qa~aavGq~~l~~~~~~~l~~~G~~~~qvllt~~d~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~~e------- 143 (367)
T 2j5v_A 71 SKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAE------- 143 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCCGG-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccCceEEEhHHHHHHHHHHCCCEEEECCCCceeccc-------
Confidence 2346678999989999999999999999999999999887666666668999999999999999888776632
Q ss_pred CcccchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeec--cccchhhhcCCCCccccCchHHHHHHHH
Q 005131 168 GIFWDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVK--ERHQGEITFGDKSRVGRGGMTAKVKAAV 244 (713)
Q Consensus 168 g~~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~--~e~~~~~~~~~~~~~~~g~m~~Kl~aa~ 244 (713)
..++|||++|+++|.+|+||+|+|+|||||||++|| .+|++++|+++++ +|+.+++... .+.+++|+|++|++++.
T Consensus 144 l~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~-~s~~gtGgM~~Kl~Aa~ 222 (367)
T 2j5v_A 144 IKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDS-VSGLGTGGMSTKLQAAD 222 (367)
T ss_dssp GCCCSHHHHHHHHHHHHTCSEEEEEECC-------------------------------------------CHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhcc-CCCcCcCccHHHHHHHH
Confidence 235899999999999999999999999999999999 8999999999999 8888876531 24589999999999999
Q ss_pred HHHHcCCcEEEEeCCCchhHHHHhcCCcceeEEecC
Q 005131 245 NAAYAGIPVVITSGYSDENILKVLQGERIGTLFHQD 280 (713)
Q Consensus 245 ~a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~~ 280 (713)
.+.++|++++|+|++.|+.+.++++|+..||++.+.
T Consensus 223 ~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~ 258 (367)
T 2j5v_A 223 VACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQ 258 (367)
T ss_dssp HHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCC
T ss_pred HHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcC
Confidence 999999999999999999999999999999999874
No 54
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=100.00 E-value=5.7e-36 Score=307.37 Aligned_cols=245 Identities=30% Similarity=0.492 Sum_probs=199.7
Q ss_pred cceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccchHH
Q 005131 11 VKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELDGK 90 (713)
Q Consensus 11 ~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (713)
++++|||||||+++ +++++|.+.+++++++|+.+++. +++|||||||.+.+...+.. .. .+. -+.+
T Consensus 1 ~k~iViKlGGs~l~-~~~~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg~~~~~~~~g~----~~----~~~----~~~~ 66 (251)
T 2ako_A 1 MKRIVVKVGSHVIS-EENTLSFERLKNLVAFLAKLMEK-YEVILVTSAAISAGHTKLDI----DR----KNL----INKQ 66 (251)
T ss_dssp -CEEEEEECHHHHB-CSSSBCHHHHHHHHHHHHHHHHH-SEEEEEECCHHHHHHHHCCC----CS----SSH----HHHH
T ss_pred CCEEEEEeCcceeC-CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHhCC----cc----CCc----hHHH
Confidence 37899999999999 55578888999999999999888 99999999997655432221 11 111 2246
Q ss_pred HHHHcchHHHHHHHHHHhhhcCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCCCcc
Q 005131 91 ACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGIF 170 (713)
Q Consensus 91 ~~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~g~~ 170 (713)
++.++++..+..++.+.|.+.|+++.++.++..++.....+.+..+.|+.+|+.|.|||++++|.+...+ ..+
T Consensus 67 ~l~~~~q~~l~~~~~~~l~~~G~~~~~i~~~~~~~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~~~-------~~~ 139 (251)
T 2ako_A 67 VLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIEE-------IVF 139 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCEEEEEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCHH-------HHB
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEEeccchhcCcceEehHHHHHHHHHHCCCEEEEeCCCceeecc-------eee
Confidence 8888999888888999999999999888888888755433333348999999999999999877665422 134
Q ss_pred cchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeecc--ccchhhhcCCCCccccCchHHHHHHHHHHH
Q 005131 171 WDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKE--RHQGEITFGDKSRVGRGGMTAKVKAAVNAA 247 (713)
Q Consensus 171 ~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~--e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a~ 247 (713)
+|+|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++|+++ |+.+++.. ....+++|+|.+|++++..++
T Consensus 140 ~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~-~~~~~~~ggm~~k~~aa~~a~ 218 (251)
T 2ako_A 140 GDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIK-TGSEHGTGGIVTKLKAAKFLL 218 (251)
T ss_dssp TTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC----------CBSCHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcc-cCCCCccCchHHHHHHHHHHH
Confidence 899999999999999999999999999999999 78999999999998 98887652 113488999999999999999
Q ss_pred HcCCcEEEEeCCCchhHHH--HhcCCcceeEE
Q 005131 248 YAGIPVVITSGYSDENILK--VLQGERIGTLF 277 (713)
Q Consensus 248 ~~gv~v~I~~g~~~~~l~~--~~tge~iGT~i 277 (713)
++|++++|+|++.|+++.+ +++|+..||++
T Consensus 219 ~~gv~v~I~~g~~~~~l~~~~~~~g~~~GT~i 250 (251)
T 2ako_A 219 EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 250 (251)
T ss_dssp HTTCEEEEEESSSCHHHHHHHHSCCCCSSEEE
T ss_pred HCCCeEEEEeCCChhhhhhhHHhcCCCCceEe
Confidence 9999999999999999999 99999999987
No 55
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-33 Score=296.13 Aligned_cols=246 Identities=24% Similarity=0.327 Sum_probs=189.7
Q ss_pred cceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccc-cchH
Q 005131 11 VKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQI-ELDG 89 (713)
Q Consensus 11 ~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 89 (713)
++++|||||||++++++ .++.++++|+.+++.|+++|||||||++++..+ +..+.......+++.++. .+..
T Consensus 36 ~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~-~~~~~~~~~~~g~R~t~~~~l~~ 108 (298)
T 2rd5_A 36 GKTIVVKYGGAAMTSPE------LKSSVVSDLVLLACVGLRPILVHGGGPDINRYL-KQLNIPAEFRDGLRVTDATTMEI 108 (298)
T ss_dssp TCEEEEEECTHHHHCHH------HHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH-HHTTCCCCEETTEECBCHHHHHH
T ss_pred CCEEEEEECchhhCChh------HHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHH-HHcCCCccccCCcccCCHHHHHH
Confidence 67899999999999744 688999999999999999999999999997764 433333222233444331 2222
Q ss_pred HHHHHcchHHHHHHHHHHhhhcCCccc-------eeeeccc-----ccCchhHHHHH-HHHHHHHHhCCceeEEcCCCce
Q 005131 90 KACAAVGQNSIMALYDTLFSELDLTSA-------QLLVTDN-----DFRDKEFRSQL-SETVKSLLSLRVIPVFNENDAV 156 (713)
Q Consensus 90 ~~~~~~g~~~~~~l~~~~l~~~gi~~~-------~~~~~~~-----~~~~~~~~~~~-~~~i~~~l~~g~vpV~~g~d~v 156 (713)
..+.+.|+... .+...|.+.|+++. +++.+.. |+++.+....+ .+.|+.+|++|.|||++| +
T Consensus 109 ~~~~~~G~~n~--~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~---v 183 (298)
T 2rd5_A 109 VSMVLVGKVNK--NLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIAS---V 183 (298)
T ss_dssp HHHHHHHTHHH--HHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEES---E
T ss_pred HHHHHhchHHH--HHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcC---e
Confidence 22233566643 36778888888742 3343332 44443333223 378999999999999986 2
Q ss_pred ecCCCcccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeeccccchhhhcCCCCccccCc
Q 005131 157 STRKAPYEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKERHQGEITFGDKSRVGRGG 235 (713)
Q Consensus 157 ~~~~~~~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~ 235 (713)
.. ...+..+ +|+|++|+++|.+|+||+|+|+|||||||++||. | +++|++|+++|+++++..+ ++++|
T Consensus 184 ~~-----~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~-~-a~~i~~is~~e~~~~~~~g----~~~gG 252 (298)
T 2rd5_A 184 AA-----DDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKED-P-SSLIKEIDIKGVKKMIEDG----KVAGG 252 (298)
T ss_dssp EE-----CTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC-T-TSEECEEEHHHHHHHHHTT----SSCTT
T ss_pred eE-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC-C-CCCcccCCHHHHHHHHHCC----CCCCc
Confidence 22 1234455 5999999999999999999999999999999986 4 9999999999999988765 67999
Q ss_pred hHHHHHHHHHHHHcCCc-EEEEeCCCchhH-HHHhcCCcceeEEec
Q 005131 236 MTAKVKAAVNAAYAGIP-VVITSGYSDENI-LKVLQGERIGTLFHQ 279 (713)
Q Consensus 236 m~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~tge~iGT~i~~ 279 (713)
|+||++++..++++|++ ++|+|++.|+++ .++++++..||++.+
T Consensus 253 M~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 253 MIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred hHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 99999999999999999 999999999999 899999999999863
No 56
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.8e-33 Score=290.50 Aligned_cols=253 Identities=19% Similarity=0.222 Sum_probs=174.2
Q ss_pred cceEEEEeCccceecCCC--c-ccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCccccccc---Ccc
Q 005131 11 VKRIVVKVGTAVVTRSDG--R-LALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQ---KPQ 84 (713)
Q Consensus 11 ~~~iViKlGGs~l~~~~~--~-~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~---~~~ 84 (713)
-|++|||+||++|++++. + ++.+.+++++++|+.++ +.++|||||||+++... ++.++... .|...+ ...
T Consensus 2 ~k~iVIKlGG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~~-~~~~gi~~-~~~~~~g~~~~~ 77 (269)
T 3ll9_A 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHPF-AGEYRIGS-EIENEEDLRRRR 77 (269)
T ss_dssp -CCEEEEECHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHHH-HHHHTTTS-CCCSHHHHHHHH
T ss_pred CCEEEEEEChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHHH-HHHcCCCc-ccccCccccccc
Confidence 378999999999998763 5 88899999999999875 58999999999886665 44444332 332100 101
Q ss_pred ccchHHHHHHcchHHHHHHHHHHhhhcCCccceeeecccccCchhHHHHH-HHHHHHHHhCCceeEEcCCCceecCCCcc
Q 005131 85 IELDGKACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQL-SETVKSLLSLRVIPVFNENDAVSTRKAPY 163 (713)
Q Consensus 85 ~~l~~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~g~vpV~~g~d~v~~~~~~~ 163 (713)
.++.... .+. ..+...+.++|.+.|+++..+.-.+......+....+ .+.|+.+|++|+|||++| |++...
T Consensus 78 ~G~rvT~-~~~--~~ln~~l~~~L~~~G~~a~~l~g~~~~~~~~g~v~~v~~~~i~~lL~~g~ipVi~~-~~~~~~---- 149 (269)
T 3ll9_A 78 FGFALTQ-NWV--KKLNSHVCDALLAEGIPAVSMQPSAFIRAHAGRISHADISLIRSYLEEGMVPVVYG-DVVLDS---- 149 (269)
T ss_dssp HHHHHHH-HHH--HHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEEECCHHHHHHHHTTCEEEEEC-EEEEBS----
T ss_pred chhhHHH-HHH--HHHHHHHHHHHHHCCCcEEEEcchHcCeEecCeeeeecHHHHHHHHHCCCEEEECC-CEEecc----
Confidence 1111101 111 1334456778889999876543222211112222222 278999999999999994 444331
Q ss_pred cCC--CCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHH
Q 005131 164 EDS--SGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAK 239 (713)
Q Consensus 164 ~~~--~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~K 239 (713)
. ++.+ +|+|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++++++|+++++.. ....+++|+|.||
T Consensus 150 --~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~-~~~~~~tgGM~~K 226 (269)
T 3ll9_A 150 --DRRLKFSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDG-TLNTDVTGGMVGK 226 (269)
T ss_dssp --CTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC--------------------SHH
T ss_pred --cccCcceecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcc-cCCCcCcCCcHHH
Confidence 2 3333 999999999999999999999999999999999 8899999999999999876642 1235899999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhHHHHhcCCcc-eeEEe
Q 005131 240 VKAAVNAAYAGIPVVITSGYSDENILKVLQGERI-GTLFH 278 (713)
Q Consensus 240 l~aa~~a~~~gv~v~I~~g~~~~~l~~~~tge~i-GT~i~ 278 (713)
+++|..++++|++++|++++.|+++.++++|+.+ ||++.
T Consensus 227 l~aa~~a~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 227 IRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp HHHHHHHHHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred HHHHHHHHhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 9999999999999999999999999999999998 99885
No 57
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=100.00 E-value=3.2e-33 Score=295.46 Aligned_cols=248 Identities=21% Similarity=0.282 Sum_probs=193.1
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccc-cch
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQI-ELD 88 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~ 88 (713)
.++++|||||||+|++++ .++.++++|+.+++.|+++|||||||++++..+ +..+.......+++.+.. .+.
T Consensus 48 ~~k~iVIKlGGs~l~~~~------~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~-~~~g~~~~~~~g~Rvt~~~~l~ 120 (321)
T 2v5h_A 48 AGRTVVVKYGGAAMKQEE------LKEAVMRDIVFLACVGMRPVVVHGGGPEINAWL-GRVGIEPQFHNGLRVTDADTME 120 (321)
T ss_dssp TTCEEEEEECTHHHHSHH------HHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH-HHTTCCCCBSSSSBCBCHHHHH
T ss_pred CCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HHcCCCccccCCcccCCHHHHH
Confidence 367899999999998843 678999999999999999999999999998764 333333222233443322 233
Q ss_pred HHHHHHcchHHHHHHHHHHhhhcCCcc-------ceeeeccc----ccCchhHHHHH-HHHHHHHHhCCceeEEcCCCce
Q 005131 89 GKACAAVGQNSIMALYDTLFSELDLTS-------AQLLVTDN----DFRDKEFRSQL-SETVKSLLSLRVIPVFNENDAV 156 (713)
Q Consensus 89 ~~~~~~~g~~~~~~l~~~~l~~~gi~~-------~~~~~~~~----~~~~~~~~~~~-~~~i~~~l~~g~vpV~~g~d~v 156 (713)
...+.+.|+... .+..+|.+.|+++ ++++.+.. |+++.+.+..+ .+.|+.+|+.|.|||+++ +
T Consensus 121 ~~~~~~~G~in~--~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~---v 195 (321)
T 2v5h_A 121 VVEMVLVGRVNK--DIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISS---V 195 (321)
T ss_dssp HHHHHHHHTHHH--HHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEES---E
T ss_pred HHHHHHhChHHH--HHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecHHHHHHHHHCCCeEEEeC---c
Confidence 322334567654 3667788888764 23444432 56655544444 378999999999999985 3
Q ss_pred ecCCCcccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeeccccchhhhcCCCCccccCc
Q 005131 157 STRKAPYEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKERHQGEITFGDKSRVGRGG 235 (713)
Q Consensus 157 ~~~~~~~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~ 235 (713)
..+ ..+..+ +|+|++|+++|.+|+||+|+|+|||||||++||. ++++|++|+++|+++++..+ ++++|
T Consensus 196 ~~~-----~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~--~a~~i~~is~~e~~~l~~~g----~~~gG 264 (321)
T 2v5h_A 196 AAD-----ENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKR--PESLIPRLNIPQSRELIAQG----IVGGG 264 (321)
T ss_dssp EEC-----TTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC--TTCBCCEEEHHHHHHHHHTT----SSCTT
T ss_pred eEC-----CCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC--CCeeeeEEcHHHHHHHHhCC----CCcCc
Confidence 322 234456 5999999999999999999999999999999985 58999999999999988765 67999
Q ss_pred hHHHHHHHHHHHHcCCc-EEEEeCCCchhH-HHHhcCCcceeEEecC
Q 005131 236 MTAKVKAAVNAAYAGIP-VVITSGYSDENI-LKVLQGERIGTLFHQD 280 (713)
Q Consensus 236 m~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~tge~iGT~i~~~ 280 (713)
|+||++++..++++|++ ++|+|++.|+++ .++++++..||++.+.
T Consensus 265 M~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 265 MIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence 99999999999999999 999999999998 7999999999999874
No 58
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=100.00 E-value=6e-33 Score=291.72 Aligned_cols=246 Identities=21% Similarity=0.255 Sum_probs=188.4
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCcccc-ch
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIE-LD 88 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~ 88 (713)
.++++|||||||++++++ .++.++++|+.+++.|+++|||||||++++..+ +..+.......+++.+... +.
T Consensus 24 ~~k~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~-~~~~~~~~~~~g~R~t~~~~l~ 96 (299)
T 2ap9_A 24 HGKVVVVKYGGNAMTDDT------LRRAFAADMAFLRNCGIHPVVVHGGGPQITAML-RRLGIEGDFKGGFRVTTPEVLD 96 (299)
T ss_dssp TTCEEEEEECTHHHHSHH------HHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHH-HHHTCCCCCSSSSCCBCHHHHH
T ss_pred CCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHH-HHcCCcccccCCcccCCHHHHH
Confidence 367899999999999754 688999999999999999999999999997764 4344333233344544321 22
Q ss_pred HHHHHHcchHHHHHHHHHHhhhcCCccceee------ecc-----------cccCchhHHHHH-HHHHHHHHhCCceeEE
Q 005131 89 GKACAAVGQNSIMALYDTLFSELDLTSAQLL------VTD-----------NDFRDKEFRSQL-SETVKSLLSLRVIPVF 150 (713)
Q Consensus 89 ~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~~------~~~-----------~~~~~~~~~~~~-~~~i~~~l~~g~vpV~ 150 (713)
...+.+.|+.. ..+...|.+.|+++..+. ++. .++++.+.+..+ .+.|+.+|+.|.|||+
T Consensus 97 ~~~~~~~G~l~--~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVv 174 (299)
T 2ap9_A 97 VARMVLFGQVG--RELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVV 174 (299)
T ss_dssp HHHHHHHHTHH--HHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhHHH--HHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEEE
Confidence 22233345543 347888999998763221 110 123333333323 3889999999999999
Q ss_pred cCCCceecCCCcccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeeccccchhhhcCCCC
Q 005131 151 NENDAVSTRKAPYEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKERHQGEITFGDKS 229 (713)
Q Consensus 151 ~g~d~v~~~~~~~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~~~~~ 229 (713)
+| +.. ...+..+ +|+|++|+.+|.+|+||+|+|+|||||||++||. ++++|++|+++|+++++.
T Consensus 175 ~~---v~~-----~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~--~~~~i~~is~~e~~~l~~----- 239 (299)
T 2ap9_A 175 ST---LAP-----DADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD--RDSLVSEIDTGTLAQLLP----- 239 (299)
T ss_dssp ES---EEE-----CTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC--TTCEESEEEHHHHHHHGG-----
T ss_pred CC---eeE-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC--CCcChhhcCHHHHHHHHH-----
Confidence 86 222 2234455 6999999999999999999999999999999985 479999999999999865
Q ss_pred ccccCchHHHHHHHHHHHHcCCc-EEEEeCCCchhH-HHHhcCCcceeEEecC
Q 005131 230 RVGRGGMTAKVKAAVNAAYAGIP-VVITSGYSDENI-LKVLQGERIGTLFHQD 280 (713)
Q Consensus 230 ~~~~g~m~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~tge~iGT~i~~~ 280 (713)
+++|+|+||++++..++++|++ ++|+|++.|+++ .++++++..||++.++
T Consensus 240 -~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~ 291 (299)
T 2ap9_A 240 -TLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG 291 (299)
T ss_dssp -GSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred -hhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence 6799999999999999999999 999999999997 8999999999999875
No 59
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=100.00 E-value=4.4e-33 Score=290.10 Aligned_cols=247 Identities=16% Similarity=0.201 Sum_probs=185.2
Q ss_pred cceEEEEeCccceecCC--CcccHHHHHHHHHHHHHHHHCCC-eEEEEecChhhhchHHHhhhhccCcccccccCccccc
Q 005131 11 VKRIVVKVGTAVVTRSD--GRLALGRLGALCEQIKELNSQGY-EVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIEL 87 (713)
Q Consensus 11 ~~~iViKlGGs~l~~~~--~~~~~~~~~~~~~~i~~~~~~g~-~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l 87 (713)
.+++|||||||+|++++ +++|.+.+++++++|+.+++.|+ ++|||||||++++..+ ...+... . +
T Consensus 23 ~~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l-~~~~~~~-~----------~ 90 (286)
T 3d40_A 23 PDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAI-RDHDSTH-A----------F 90 (286)
T ss_dssp CSEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC--------------C----------C
T ss_pred CCEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHcCCCc-c----------c
Confidence 35899999999999875 37899999999999999999998 6999999998877763 3222111 1 1
Q ss_pred hHHHHHHcchHHHHHHHHHHhhhcCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCC
Q 005131 88 DGKACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSS 167 (713)
Q Consensus 88 ~~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~ 167 (713)
. +...++++..+...+...|.+.|+++.++...+.++...+......+.|+.+|+.|.|||++| |++.. ..
T Consensus 91 ~-~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~dg~~~~~~~~i~~lL~~g~IpVi~g-d~~~~-------~~ 161 (286)
T 3d40_A 91 S-LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRDVLDHGALPVLAG-DALFD-------EH 161 (286)
T ss_dssp T-THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEECCSHHHHHHHTTCEEEEEC-EEEEB-------TT
T ss_pred c-hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccCCeEEehHHHHHHHHHCcCEEEEcC-CeEEc-------CC
Confidence 1 135666777777788999999999887776544432111111111367999999999999995 55443 23
Q ss_pred Ccc--cchhHHHHHHHhh-hCCCEEEEeecCCccccCCCCCCCCcceeeeeccccchhhhc--CCCCccccCchHHHHHH
Q 005131 168 GIF--WDNDSLAALLALE-LKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKERHQGEITF--GDKSRVGRGGMTAKVKA 242 (713)
Q Consensus 168 g~~--~~sD~~A~~lA~~-l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~--~~~~~~~~g~m~~Kl~a 242 (713)
+.+ +|+|++|+++|.+ |+||+|+|+|||||||++||. ++++|++|+++|++++++. +....+++|+|+||+++
T Consensus 162 g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~--~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~A 239 (286)
T 3d40_A 162 GKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG--GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDA 239 (286)
T ss_dssp SCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC-----CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHH
T ss_pred CCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC--CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHH
Confidence 433 9999999999999 999999999999999999997 8999999999999887652 11234789999999999
Q ss_pred HHHHHHcCCcEEEEeCCCchhHHHHhcC-----Ccc-eeEEecC
Q 005131 243 AVNAAYAGIPVVITSGYSDENILKVLQG-----ERI-GTLFHQD 280 (713)
Q Consensus 243 a~~a~~~gv~v~I~~g~~~~~l~~~~tg-----e~i-GT~i~~~ 280 (713)
+..++++|++++|+|++.|+++.+++++ +.+ ||.|..+
T Consensus 240 a~~a~~~gv~v~I~~g~~p~~l~~l~t~~~~~~~~~~~t~i~~~ 283 (286)
T 3d40_A 240 LVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTT 283 (286)
T ss_dssp HHHHHHTTCEEEEEECCTTCCCGGGGSCGGGSCTTCCCEEEEC-
T ss_pred HHHHHHCCCcEEEEeCCCCCcHHHHhcCcccCcccccceeeeec
Confidence 9999999999999999999999999999 776 9999764
No 60
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.3e-32 Score=279.27 Aligned_cols=237 Identities=19% Similarity=0.299 Sum_probs=172.7
Q ss_pred chhhhhhccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccC
Q 005131 3 SSRAFVKDVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQK 82 (713)
Q Consensus 3 ~~~~~~~~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~ 82 (713)
.++....+++++|||+|||+|+++++.+|.+.+++++++|+.++++|+++|||||||. +.+.+.... .+++.
T Consensus 42 ~~~~~~~~~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~-i~~g~~~~~-------~gl~~ 113 (281)
T 3nwy_A 42 ASAAQLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGN-FFRGAQLQQ-------LGMER 113 (281)
T ss_dssp -----CCCCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTT-C---CCTTT-------TTCCH
T ss_pred cccccCCcCcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChh-HhhhHHHHh-------cCCCc
Confidence 3455556789999999999999876679999999999999999999999999998753 322211000 11111
Q ss_pred ccccchHHHHHHcchHHHHHHHHHHhhhcCCcc-ceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCC
Q 005131 83 PQIELDGKACAAVGQNSIMALYDTLFSELDLTS-AQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKA 161 (713)
Q Consensus 83 ~~~~l~~~~~~~~g~~~~~~l~~~~l~~~gi~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~ 161 (713)
.. ......+....-..++..+|.+.|+++ .+..++..++.+... + .+.+ .+|++|.|||++| +
T Consensus 114 ~~----~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~~~~~--~-~~~l-~lL~~g~IpVv~g-----~--- 177 (281)
T 3nwy_A 114 TR----SDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYL--P-LRAV-RHLEKGRVVIFGA-----G--- 177 (281)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCGGGSEECC--H-HHHH-HHHHTTCEEEEES-----T---
T ss_pred cc----hhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccccccccc--h-HHHH-HHHHcCCeEEEEC-----C---
Confidence 11 111111222222236788899999998 466666555543211 1 2345 7899999999986 2
Q ss_pred cccCCCCcccchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHH
Q 005131 162 PYEDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKV 240 (713)
Q Consensus 162 ~~~~~~g~~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl 240 (713)
.+.++++||++|+++|.+|+||+|+|+|||||||++|| .+|++++|++|+++|+.+ . +.|..|+
T Consensus 178 ----~g~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~---~--------g~~v~k~ 242 (281)
T 3nwy_A 178 ----MGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLD---R--------GLRVADA 242 (281)
T ss_dssp ----TSSTTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHT---T--------TCCSSCH
T ss_pred ----CCCCCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHH---c--------CCCcHHH
Confidence 23346899999999999999999999999999999999 899999999999988643 1 2344567
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhHHHHhcCCcceeEEe
Q 005131 241 KAAVNAAYAGIPVVITSGYSDENILKVLQGERIGTLFH 278 (713)
Q Consensus 241 ~aa~~a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~ 278 (713)
+++..|.++|++++|+|+++|+++.++++|+.+||++.
T Consensus 243 ~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 243 TAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp HHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred HHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 89999999999999999999999999999999999884
No 61
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.98 E-value=4.5e-32 Score=283.01 Aligned_cols=243 Identities=24% Similarity=0.301 Sum_probs=188.0
Q ss_pred cceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCcc-ccchH
Q 005131 11 VKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQ-IELDG 89 (713)
Q Consensus 11 ~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 89 (713)
++++|||||||++++++ .++.++++|+.+++.|+++|||||||++++..+ +..+.......+++.++ ..+..
T Consensus 21 ~~~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~-~~~~~~~~~~~g~r~t~~~~l~~ 93 (282)
T 2bty_A 21 GKTFVIKFGGSAMKQEN------AKKAFIQDIILLKYTGIKPIIVHGGGPAISQMM-KDLGIEPVFKNGHRVTDEKTMEI 93 (282)
T ss_dssp TCEEEEEECSHHHHSHH------HHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHH-HHHTCCCCBSSSSBCBCHHHHHH
T ss_pred CCeEEEEECchhhCChh------HHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHH-HHcCCCccccCCcccCCHHHHHH
Confidence 67899999999998743 688999999999999999999999999997764 43333332333444443 12322
Q ss_pred HHHHHcchHHHHHHHHHHhhhcCCccc-------eeeeccc-----ccCchhHHHHH-HHHHHHHHhCCceeEEcCCCce
Q 005131 90 KACAAVGQNSIMALYDTLFSELDLTSA-------QLLVTDN-----DFRDKEFRSQL-SETVKSLLSLRVIPVFNENDAV 156 (713)
Q Consensus 90 ~~~~~~g~~~~~~l~~~~l~~~gi~~~-------~~~~~~~-----~~~~~~~~~~~-~~~i~~~l~~g~vpV~~g~d~v 156 (713)
..+.+.|+... .+..+|.+.|+++. +++.+.. |+++.+..+.+ .+.|+.+|+.|.|||++| +
T Consensus 94 ~~~~~~G~~~~--~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~---v 168 (282)
T 2bty_A 94 VEMVLVGKINK--EIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAP---V 168 (282)
T ss_dssp HHHHHHHTHHH--HHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEES---E
T ss_pred HHHHHhhHHHH--HHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECC---C
Confidence 22333566643 36778889998753 3333322 45554443333 388999999999999986 2
Q ss_pred ecCCCcccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeeccccchhhhcCCCCccccCc
Q 005131 157 STRKAPYEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKERHQGEITFGDKSRVGRGG 235 (713)
Q Consensus 157 ~~~~~~~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~ 235 (713)
.. ...+..+ +|+|++|+.+|.+|+||+|+|+|||||||++ | ++|++|+++|+.+++..+ .+++|
T Consensus 169 ~~-----~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~----~--~~i~~i~~~e~~~~~~~g----~~~gG 233 (282)
T 2bty_A 169 GI-----GEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD----G--KLISTLTPDEAEELIRDG----TVTGG 233 (282)
T ss_dssp EE-----CSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET----T--EECCEECHHHHHHHHTTT----CSCTT
T ss_pred cc-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC----c--hhhhhCCHHHHHHHHHcC----CCCCc
Confidence 22 1233455 6999999999999999999999999999997 2 999999999999988765 67899
Q ss_pred hHHHHHHHHHHHHcCCc-EEEEeCCCchhH-HHHhcCCcceeEEecC
Q 005131 236 MTAKVKAAVNAAYAGIP-VVITSGYSDENI-LKVLQGERIGTLFHQD 280 (713)
Q Consensus 236 m~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~tge~iGT~i~~~ 280 (713)
|.||++++..++++|++ ++|+|++.|+++ .++++++..||++.++
T Consensus 234 M~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 234 MIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred HHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 99999999999999998 999999999998 7999999999999763
No 62
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.98 E-value=7.3e-32 Score=283.27 Aligned_cols=245 Identities=19% Similarity=0.281 Sum_probs=189.0
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCcc-ccch
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQ-IELD 88 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~ 88 (713)
+++++||||||++|++++ .++.++++|+.+++.|+++|||||||++++..+ ...+.......+++.+. ..+.
T Consensus 25 ~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~-~~~g~~~~~~~g~rvt~~~~l~ 97 (300)
T 2buf_A 25 VGKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGPQIGDLL-KRLSIESHFIDGMRVTDAATMD 97 (300)
T ss_dssp TTCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHH-HHTTCCCCBSSSSBCBCHHHHH
T ss_pred cCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHH-HHcCCCccccCCeecCCHHHHH
Confidence 367899999999999864 688999999999999999999999999998764 33333322233344432 2233
Q ss_pred HHHHHHcchHHHHHHHHHHhhhcCCccc-------eeeeccc----------------ccCchhHHHHH-HHHHHHHHhC
Q 005131 89 GKACAAVGQNSIMALYDTLFSELDLTSA-------QLLVTDN----------------DFRDKEFRSQL-SETVKSLLSL 144 (713)
Q Consensus 89 ~~~~~~~g~~~~~~l~~~~l~~~gi~~~-------~~~~~~~----------------~~~~~~~~~~~-~~~i~~~l~~ 144 (713)
...+.+.|+.. ..+..+|.+.|+++. +++.+.. |+++.+.+..+ .+.|+.+|+.
T Consensus 98 ~~~~~~~G~~~--~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~ 175 (300)
T 2buf_A 98 VVEMVLGGQVN--KDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKG 175 (300)
T ss_dssp HHHHHHHHTHH--HHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHHH--HHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECHHHHHHHHHC
Confidence 32333456763 447778888887742 2222221 45444443223 4889999999
Q ss_pred CceeEEcCCCceecCCCcccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeeccccchhh
Q 005131 145 RVIPVFNENDAVSTRKAPYEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKERHQGEI 223 (713)
Q Consensus 145 g~vpV~~g~d~v~~~~~~~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~ 223 (713)
|.|||+++ +... ..+..+ +|+|++|+++|.+|+||+|+|+|||||||++ ++++|++|+++|+.+++
T Consensus 176 g~IpVi~~---v~~~-----~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~-----~a~~i~~i~~~e~~~~~ 242 (300)
T 2buf_A 176 DFIPVIAP---IGVG-----SNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK-----QGQVLTGLSTEQVNELI 242 (300)
T ss_dssp TCEEEEEE---EEEC-----TTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT-----TSCBCCEECHHHHHHHH
T ss_pred CCEEEEcC---ceeC-----CCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECC-----CCcChhhCCHHHHHHHH
Confidence 99999985 3222 234455 5999999999999999999999999999997 49999999999999988
Q ss_pred hcCCCCccccCchHHHHHHHHHHHHcCCc-EEEEeCCCchhH-HHHhcCCcceeEEecC
Q 005131 224 TFGDKSRVGRGGMTAKVKAAVNAAYAGIP-VVITSGYSDENI-LKVLQGERIGTLFHQD 280 (713)
Q Consensus 224 ~~~~~~~~~~g~m~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~tge~iGT~i~~~ 280 (713)
..+ .+++||+||++++..++++|++ ++|+|++.|+++ .++++++..||++.++
T Consensus 243 ~~~----~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 243 ADG----TIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp HTT----CSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred HcC----CCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence 754 6789999999999999999999 999999999998 7999999999999764
No 63
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.98 E-value=1.7e-31 Score=274.30 Aligned_cols=236 Identities=15% Similarity=0.216 Sum_probs=170.2
Q ss_pred chhhhhhccceEEEEeCccceecCCC-cccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCccccccc
Q 005131 3 SSRAFVKDVKRIVVKVGTAVVTRSDG-RLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQ 81 (713)
Q Consensus 3 ~~~~~~~~~~~iViKlGGs~l~~~~~-~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~ 81 (713)
+++..|++++++|||||||+++++.+ .+|.+.+++++++|+.++ .|+++|||||||..+....++..+... ..
T Consensus 16 ~~~~~~~~~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~~~~~g~~~-~~---- 89 (256)
T 2va1_A 16 PRGSHMMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSIAKELDMDR-NL---- 89 (256)
T ss_dssp -------CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHHHHHTTCCH-HH----
T ss_pred chhhhhhhcCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccchHHHcCCCC-Cc----
Confidence 45666778899999999999998643 688899999999999998 999999999998766654322222111 10
Q ss_pred CccccchHHHHHHcchHHHHHHHHHHhhhcCCccc-eeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCC
Q 005131 82 KPQIELDGKACAAVGQNSIMALYDTLFSELDLTSA-QLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRK 160 (713)
Q Consensus 82 ~~~~~l~~~~~~~~g~~~~~~l~~~~l~~~gi~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~ 160 (713)
. . ...+... ..-..++.++|.+.|+++. +.+++..++.+... + .+. ..+|+.|.|||++| .
T Consensus 90 -~--~-~~~~l~~---~~n~~l~~~~l~~~Gi~a~~~~~~t~~~~~~~~~--~-~~~-~~lL~~g~IpVi~~-----~-- 151 (256)
T 2va1_A 90 -A--D-NMGMMAT---IINGLALENALNHLNVNTIVLSAIKCDKLVHESS--A-NNI-KKAIEKEQVMIFVA-----G-- 151 (256)
T ss_dssp -H--H-HHHHHHH---HHHHHHHHHHHHTTTCCEEEEESSCCTTTCEECC--H-HHH-HHHHHTTCEEEEES-----T--
T ss_pred -h--h-HHHHHHH---HHHHHHHHHHHHHcCCCeEEEeeeecccccchhh--H-HHH-HHHHhCCcEEEEEC-----C--
Confidence 0 0 0112222 2222333778899999874 44455444433311 1 233 68999999999986 2
Q ss_pred CcccCCCCcccchhHHHHHHHhhhCCCEEEEeec-CCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHH
Q 005131 161 APYEDSSGIFWDNDSLAALLALELKADLLILLSD-VEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTA 238 (713)
Q Consensus 161 ~~~~~~~g~~~~sD~~A~~lA~~l~Ad~li~~Td-V~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~ 238 (713)
.+.++++||++|+++|.+|+||+|+|+|| |||||++|| .+|++++|++|+++|+.++ + .++|
T Consensus 152 -----~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~---~------~~~m-- 215 (256)
T 2va1_A 152 -----TGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---N------LKVM-- 215 (256)
T ss_dssp -----TSSSSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHH---T------CCSS--
T ss_pred -----CCCCCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHh---c------cCCc--
Confidence 22346889999999999999999999999 999999999 8899999999999998875 1 3788
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhHHHHhcCCcceeEEe
Q 005131 239 KVKAAVNAAYAGIPVVITSGYSDENILKVLQGERIGTLFH 278 (713)
Q Consensus 239 Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~ 278 (713)
|++++..|.++|++++|+|+++|+++.++++|+..||++.
T Consensus 216 k~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 216 DATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp CHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred cHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 7789999999999999999999999999999999999985
No 64
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.98 E-value=3.2e-31 Score=269.34 Aligned_cols=230 Identities=21% Similarity=0.254 Sum_probs=171.7
Q ss_pred hccceEEEEeCccceecCCC-cccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccc
Q 005131 9 KDVKRIVVKVGTAVVTRSDG-RLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIEL 87 (713)
Q Consensus 9 ~~~~~iViKlGGs~l~~~~~-~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l 87 (713)
.+++++|||+|||+|+++++ ++|.+.+++++++|+.+++.|++++||||||...-...+.. .++.
T Consensus 7 ~~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~~~--------~g~~------ 72 (243)
T 3ek6_A 7 LSYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAA--------SGMD------ 72 (243)
T ss_dssp CSCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTTSC--------SSSC------
T ss_pred CcCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH--------cCCC------
Confidence 35899999999999998764 79999999999999999999999999999864221111110 0111
Q ss_pred hHHHHHHcchH--HHH-HHHHHHhhhcCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCccc
Q 005131 88 DGKACAAVGQN--SIM-ALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYE 164 (713)
Q Consensus 88 ~~~~~~~~g~~--~~~-~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~ 164 (713)
......+|.. .+. .++..+|.+.|+++..+.-. +...... ....+.+..+|++|.|||++| +
T Consensus 73 -~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~--~~~~v~~-~~~~~~~~~lL~~g~IpVv~~-----~------ 137 (243)
T 3ek6_A 73 -RVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAI--KINDVCE-DFIRRRAIRHLEKGRIAIFAA-----G------ 137 (243)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS--CBTTTBE-ECCHHHHHHHHHTTCEEEEES-----T------
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechh--hcCcccC-cCCHHHHHHHHHCCcEEEEEC-----C------
Confidence 1111111211 122 23777889999876422111 1100000 001255789999999999986 2
Q ss_pred CCCCcccchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHH
Q 005131 165 DSSGIFWDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAA 243 (713)
Q Consensus 165 ~~~g~~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa 243 (713)
.+.+++++|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++++++|+.+ . +.++|++ +++
T Consensus 138 -~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~---~------g~~~~~~--~a~ 205 (243)
T 3ek6_A 138 -TGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIM---Q------GLEVMDT--AAF 205 (243)
T ss_dssp -TSSTTCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHH---H------TCCSSCH--HHH
T ss_pred -CCCCcCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHh---C------CchhHHH--HHH
Confidence 22346899999999999999999999999999999999 899999999999988765 1 2467755 899
Q ss_pred HHHHHcCCcEEEEeCCCchhHHHHhcCCcceeEEec
Q 005131 244 VNAAYAGIPVVITSGYSDENILKVLQGERIGTLFHQ 279 (713)
Q Consensus 244 ~~a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~ 279 (713)
..|.++|++++|+|+++|+++.++++|+.+||.+.+
T Consensus 206 ~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 206 ALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp HHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred HHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 999999999999999999999999999999999865
No 65
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.97 E-value=1.1e-31 Score=276.14 Aligned_cols=220 Identities=20% Similarity=0.336 Sum_probs=171.4
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccchH
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELDG 89 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 89 (713)
|+|++||||||+++++. ++.++++|+.+++.|.++||||||+++++..+ +..+.......++|.+. +
T Consensus 35 m~k~iVIKiGGs~l~~~--------~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l-~~lg~~~~~~~G~Rvtd----~ 101 (279)
T 3l86_A 35 MKDIIVIKIGGVASQQL--------SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLM-EENQVPVKKINGLRVTS----K 101 (279)
T ss_dssp CCCEEEEEECTTGGGSC--------CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH-HHTTCCCCEETTEECBC----H
T ss_pred CCceEEEEEChHHHHhH--------HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH-HHcCCCCccCCCcccCc----H
Confidence 34799999999999873 36899999999999999999999999999875 33333332333455554 3
Q ss_pred HHHHHcchHHHH----HHHHHHhhhcCCcccee------eeccc-----ccCchhHHHHH-HHHHHHHHhCCceeEEcCC
Q 005131 90 KACAAVGQNSIM----ALYDTLFSELDLTSAQL------LVTDN-----DFRDKEFRSQL-SETVKSLLSLRVIPVFNEN 153 (713)
Q Consensus 90 ~~~~~~g~~~~~----~l~~~~l~~~gi~~~~~------~~~~~-----~~~~~~~~~~~-~~~i~~~l~~g~vpV~~g~ 153 (713)
+.+..+ +..+. ..+..+|.+.|+++.++ +++.. +|++.+....+ .+.|+.+|+.|+|||++|
T Consensus 102 ~~l~~v-~~~l~G~ln~~i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~~- 179 (279)
T 3l86_A 102 DDMVLV-SHALLDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILAS- 179 (279)
T ss_dssp HHHHHH-HHHHHHTTHHHHHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECHHHHHHHHHTTCEEEEES-
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhHHHHHHHHhCCcEEEECC-
Confidence 334333 33222 45778899999998776 55554 34444444444 489999999999999997
Q ss_pred CceecCCCcccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeeccccchhhhcCCCCccc
Q 005131 154 DAVSTRKAPYEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKERHQGEITFGDKSRVG 232 (713)
Q Consensus 154 d~v~~~~~~~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~~~~~~~~ 232 (713)
+... ..+..+ +|+|++|+++|.+|+||+|+|+|||||||+ ++++|++|+++|+++++..+ ++
T Consensus 180 --v~~~-----~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~------d~~~I~~i~~~e~~~l~~~~----~~ 242 (279)
T 3l86_A 180 --LGYS-----KEGDMLNINADYLATAVAVALAADKLILMTNVKGVLE------NGAVLEKITSHQVQEKIDTA----VI 242 (279)
T ss_dssp --EEEC-----TTSCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEE------TTEECCEEEGGGSHHHHHTT----SS
T ss_pred --cEEC-----CCCCEeecCHHHHHHHHHHHcCCCEEEEEeCCCcccc------CCEehhhccHHHHHHHHhCC----CC
Confidence 3222 133445 699999999999999999999999999995 38999999999999988754 68
Q ss_pred cCchHHHHHHHHHHHHcCCc-EEEEeCCCc
Q 005131 233 RGGMTAKVKAAVNAAYAGIP-VVITSGYSD 261 (713)
Q Consensus 233 ~g~m~~Kl~aa~~a~~~gv~-v~I~~g~~~ 261 (713)
+|+|.||+++|..++++|++ ++|+|++..
T Consensus 243 tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~~ 272 (279)
T 3l86_A 243 TAGMIPKIESAAKTVAAGVGQVLIGDNLLT 272 (279)
T ss_dssp CTTHHHHHHHHHHHHHTTCSEEEEESSSSC
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEEeccCCC
Confidence 99999999999999999999 999997644
No 66
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.97 E-value=1.1e-31 Score=283.45 Aligned_cols=254 Identities=18% Similarity=0.153 Sum_probs=188.0
Q ss_pred hhccceEEEEeCccceecCC--Cc--ccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCc
Q 005131 8 VKDVKRIVVKVGTAVVTRSD--GR--LALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKP 83 (713)
Q Consensus 8 ~~~~~~iViKlGGs~l~~~~--~~--~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~ 83 (713)
|+|++++|||+||++|.+++ ++ ++.+.+++++++|+.+++.|+++|||||||+++++.+ ...+... .+ .+.
T Consensus 1 ~~~~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~-~~~~~~~-~~--t~~- 75 (316)
T 2e9y_A 1 MDSGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLS-EAFEALP-PE--RPR- 75 (316)
T ss_dssp ---CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHH-HHHHTSC-TT--SCC-
T ss_pred CCCCCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHH-HHcCCCC-CC--CCH-
Confidence 56788999999999999544 22 3347899999999999999999999999999999754 3333322 22 111
Q ss_pred cccchHHHHHHcchHH--HHHHHHHHhhhcCCcc------ceeeeccccc------------C-------------ch--
Q 005131 84 QIELDGKACAAVGQNS--IMALYDTLFSELDLTS------AQLLVTDNDF------------R-------------DK-- 128 (713)
Q Consensus 84 ~~~l~~~~~~~~g~~~--~~~l~~~~l~~~gi~~------~~~~~~~~~~------------~-------------~~-- 128 (713)
..+....+.+.|+.+ +...+...|.+.|+++ +|+.++..|. . +.
T Consensus 76 -~~l~~~~~~~~G~i~~~l~~~l~~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~ 154 (316)
T 2e9y_A 76 -QPLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFK 154 (316)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEE
T ss_pred -HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeee
Confidence 223333334456653 4467888888999883 4555554441 0 10
Q ss_pred hH--------------HH-HHHHHHHHHHhCCceeEEcCCCceecCCCcccCCCC-c----c-cchhHHHHHHHhhhCCC
Q 005131 129 EF--------------RS-QLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSG-I----F-WDNDSLAALLALELKAD 187 (713)
Q Consensus 129 ~~--------------~~-~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~g-~----~-~~sD~~A~~lA~~l~Ad 187 (713)
+. .. ...+.|+.+|+.|.|||++||+.+... .+..+ . + +|+|++|+++|.+|+||
T Consensus 155 ~~~g~g~r~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~----~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad 230 (316)
T 2e9y_A 155 RDPRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVV----ERPGGVLEPVEAVVDKDLASSLLATQLNAD 230 (316)
T ss_dssp ECTTSSEEEEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEE----ECTTSCEEECSCCCCHHHHHHHHHHHTTCS
T ss_pred ccccccceecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCee----ECCCCCeecceeeeCHHHHHHHHHHHcCCC
Confidence 00 00 124889999999999999986643321 01222 1 2 59999999999999999
Q ss_pred EEEEeecCCccccCCCCCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHHHHHcCC-cEEEEeCCCchhHHH
Q 005131 188 LLILLSDVEGLYSGPPSDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNAAYAGI-PVVITSGYSDENILK 266 (713)
Q Consensus 188 ~li~~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a~~~gv-~v~I~~g~~~~~l~~ 266 (713)
+|+|+|||||||+ ||.+|++++|++|+++|+++++..+ .+.+|+|.+|+++|..++++|+ +++|++ ++.+.+
T Consensus 231 ~LiilTdVdGVy~-dp~~p~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~ 303 (316)
T 2e9y_A 231 LLVILTDVPGVAV-NYGREGERWLRRAAASELKKYLREG---HFPPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQ 303 (316)
T ss_dssp EEEEEESSSSCEE-TTTSTTCEECSEEEHHHHHHHHHTT---CSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHH
T ss_pred EEEEEeCchHhhC-CCCCCCCcCCcEEcHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHH
Confidence 9999999999999 7877899999999999999987654 3778999999999999999999 699998 677889
Q ss_pred HhcCCcceeEEec
Q 005131 267 VLQGERIGTLFHQ 279 (713)
Q Consensus 267 ~~tge~iGT~i~~ 279 (713)
+++| ..||++.+
T Consensus 304 ~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 304 VLSL-QAGTVVML 315 (316)
T ss_dssp HHTT-SSSEEEEC
T ss_pred HHcC-CCCeEEec
Confidence 9998 78999864
No 67
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.97 E-value=1e-31 Score=274.41 Aligned_cols=240 Identities=16% Similarity=0.196 Sum_probs=168.8
Q ss_pred ccceEEEEeCccceecCC--CcccHHHHHHHHHHHHHHHHCCCeEE-EEecChhhhchHHHhhhhccCcccccccCcccc
Q 005131 10 DVKRIVVKVGTAVVTRSD--GRLALGRLGALCEQIKELNSQGYEVI-LVSSGAVGLGRQRLRYRRLINSSFADLQKPQIE 86 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~--~~~~~~~~~~~~~~i~~~~~~g~~vv-iV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (713)
.|+++||||||+++++++ .+++.+.+++++++|+. |.++| ||||||++ ++.+++..+... .+.+.....+.
T Consensus 2 ~~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~-~~~~~~~~gi~~-~~~~~d~~gl~ 75 (249)
T 3ll5_A 2 PFTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSF-GHIKAMEFGLPG-PKNPRSSIGYS 75 (249)
T ss_dssp --CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGG-THHHHHHHTCSE-ECCHHHHHHHH
T ss_pred CceEEEEEECccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHH-HHHHHHHhCCCc-CCCccccccHH
Confidence 378999999999999864 36888889999999975 99999 99999766 444455444322 33210011111
Q ss_pred chHHHHHHcchHHHHHHHHHHhhhcCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCC
Q 005131 87 LDGKACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDS 166 (713)
Q Consensus 87 l~~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~ 166 (713)
..... +..+...+.++|.+.|+++..+. ..+....+.+ ..+.|+.+|++|.|||++| |++... .
T Consensus 76 ~t~~~-----~~~ln~~~v~~l~~~G~~a~~l~--~~~~~~~g~v--~~~~i~~ll~~g~ipVi~~-~~~~~~------~ 139 (249)
T 3ll5_A 76 IVHRD-----MENLDLMVIDAMIEMGMRPISVP--ISALRYDGRF--DYTPLIRYIDAGFVPVSYG-DVYIKD------E 139 (249)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHTTCCEEECC--GGGSCBSSSB--CCHHHHHHHHTTCEEEEEC-EEEEEE------T
T ss_pred HHHHH-----HHHHHHHHHHHHHHCCCcEEEEc--HHHcccccEE--cHHHHHHHHHCCCEEEECC-CEEEcC------C
Confidence 11111 12444555577889999876542 2233223333 2378999999999999994 554432 1
Q ss_pred CC-cccchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHH
Q 005131 167 SG-IFWDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAV 244 (713)
Q Consensus 167 ~g-~~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~ 244 (713)
++ .++|+|++|+++|.+|+||+|+|+|||||||++|| .+|++++|+++. ++..... ...+++|+|.||+++|.
T Consensus 140 ~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~~~----~~~~~tGgM~~Kl~aA~ 214 (249)
T 3ll5_A 140 HSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITFDR----VQNDVTGGIGKKFESMV 214 (249)
T ss_dssp TEEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-----------------HHHHHHHH
T ss_pred CceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhccc----CCCeeECCHHHHHHHHH
Confidence 22 23899999999999999999999999999999999 899999999993 3322222 23488999999999999
Q ss_pred HH-HHcCCcEEEEeCCCchhHHHHhcCCcc-eeEE
Q 005131 245 NA-AYAGIPVVITSGYSDENILKVLQGERI-GTLF 277 (713)
Q Consensus 245 ~a-~~~gv~v~I~~g~~~~~l~~~~tge~i-GT~i 277 (713)
.+ .++|++++|+|++.|+++.. +.|+.+ ||++
T Consensus 215 ~a~~~~Gv~v~I~~g~~~~~l~~-l~g~~~~GT~i 248 (249)
T 3ll5_A 215 KMKSSVKNGVYLINGNHPERIGD-IGKESFIGTVI 248 (249)
T ss_dssp HHHTTCTTCEEEEETTSGGGGGG-TTSTTCCSEEE
T ss_pred HHHHhcCCEEEEEeCCChhHHHH-hCCCCCCCEEe
Confidence 99 89999999999999999999 999988 9987
No 68
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.97 E-value=1.1e-31 Score=281.65 Aligned_cols=264 Identities=17% Similarity=0.179 Sum_probs=176.9
Q ss_pred chhhhhhccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccC
Q 005131 3 SSRAFVKDVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQK 82 (713)
Q Consensus 3 ~~~~~~~~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~ 82 (713)
++++.-+.|++||||+||++|.+.. ..+.+.++.++++|+.+++.|+++|||||||||+|..+........ .....+.
T Consensus 16 ~~~~d~K~MkRIVIklGGnAL~~~~-~~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~-~~~~~~~ 93 (332)
T 4axs_A 16 HIDDDDKHMSRIVIALGGNALGDNP-SQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKK-ANEKTAL 93 (332)
T ss_dssp ----------CEEEEECGGGGCSSH-HHHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTT-TTSCCCC
T ss_pred cccccccCcceEEEEEChhhcCCCh-HHHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhcc-ccCCCCC
Confidence 3455556789999999999998643 3345678899999999999999999999999999987544322111 1111211
Q ss_pred ccccchHHHHHHcchHH--HHHHHHHHhhhcCCcc------ceeeecccccC----------------------------
Q 005131 83 PQIELDGKACAAVGQNS--IMALYDTLFSELDLTS------AQLLVTDNDFR---------------------------- 126 (713)
Q Consensus 83 ~~~~l~~~~~~~~g~~~--~~~l~~~~l~~~gi~~------~~~~~~~~~~~---------------------------- 126 (713)
. .+......+.+..+ +...+.+.|.+.++.. .+.+++.+|..
T Consensus 94 ~--~l~~~~a~tqg~ig~~l~~~l~~~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~~~ 171 (332)
T 4axs_A 94 V--PFAEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSVIV 171 (332)
T ss_dssp C--CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSCCC
T ss_pred c--hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCEEE
Confidence 1 11111112222222 2233555667777653 23344333200
Q ss_pred ---chhHHH---------HH-HHHHHHHHhCCceeEEcCCCceecCCCcccCCCCcc-cchhHHHHHHHhhhCCCEEEEe
Q 005131 127 ---DKEFRS---------QL-SETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGIF-WDNDSLAALLALELKADLLILL 192 (713)
Q Consensus 127 ---~~~~~~---------~~-~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~ 192 (713)
..++++ -+ .+.|..+++.|+|||+.|++.+..........+..+ +|+|++|+.||.+|+||+|+|+
T Consensus 172 ~~~~~g~rrvV~sp~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiL 251 (332)
T 4axs_A 172 EDAGRGFRKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVL 251 (332)
T ss_dssp --------CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEE
T ss_pred EccCCCceEECCCCCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEE
Confidence 011111 11 388999999999999987555443222222222223 9999999999999999999999
Q ss_pred ecCCccccCCCCCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHHHHHcCCc--EEEEeCCCchhHHHHhcC
Q 005131 193 SDVEGLYSGPPSDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNAAYAGIP--VVITSGYSDENILKVLQG 270 (713)
Q Consensus 193 TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a~~~gv~--v~I~~g~~~~~l~~~~tg 270 (713)
|||||||+++| +|++++|++++.+|++++++.+. +++|+|.||+++|..+++.|.. +.|.+ ++.+.+++.|
T Consensus 252 TdV~gv~~~~~-~~~~~~i~~it~~e~~~~~~~g~---~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l~g 324 (332)
T 4axs_A 252 TAVDYVYVDFN-KPTQKALKTVDVKALNNFINQDQ---FAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDALKG 324 (332)
T ss_dssp CSCSSCEESTT-STTCEECSSCBHHHHHHHHHTTC---SCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHTTT
T ss_pred ecCCceEcCCC-CcchhhcccCCHHHHHHHHHCCC---cCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHCC
Confidence 99999999876 57899999999999999987753 7899999999999999998765 66665 7778999999
Q ss_pred CcceeEEe
Q 005131 271 ERIGTLFH 278 (713)
Q Consensus 271 e~iGT~i~ 278 (713)
+ .||.|.
T Consensus 325 ~-~GT~Iv 331 (332)
T 4axs_A 325 L-SGTKII 331 (332)
T ss_dssp S-SSEEEB
T ss_pred C-CCcEEe
Confidence 7 599985
No 69
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.97 E-value=3.3e-31 Score=267.62 Aligned_cols=220 Identities=18% Similarity=0.161 Sum_probs=168.5
Q ss_pred ceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHH--HhhhhccCcccccccCccccchH
Q 005131 12 KRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQR--LRYRRLINSSFADLQKPQIELDG 89 (713)
Q Consensus 12 ~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~--~~~~~~~~~~~~~~~~~~~~l~~ 89 (713)
+++|||||||++.++ +.+.+++++++|+.+++.|+++|||||||+.+.... ++..+. ... . .
T Consensus 1 ~~iViK~GGs~l~~~----~~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~g~--------~~~--~--~ 64 (226)
T 2j4j_A 1 MNIILKISGKFFDED----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGI--------GEA--Y--L 64 (226)
T ss_dssp CEEEEEECTHHHHTC----CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTC--------CHH--H--H
T ss_pred CeEEEEeccccccCC----CHHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHhCC--------Ccc--c--H
Confidence 479999999999954 256899999999999999999999999976554431 121111 111 1 1
Q ss_pred HHHHHcchHHHHHHHHHHhhhcCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCCCc
Q 005131 90 KACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGI 169 (713)
Q Consensus 90 ~~~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~g~ 169 (713)
....++++.....++...|.+.|+.. +..+ .+.+..+|+.|.|||++| + .+
T Consensus 65 ~~~~~~~~~~~~~l~~~~l~~~g~~~--------~~~~-------~~~i~~ll~~g~ipVi~g-------g-------~~ 115 (226)
T 2j4j_A 65 DLLGIWASRLNAYLVMFSLQDLAYMH--------VPQS-------LEEFIQDWSHGKVVVTGG-------F-------QP 115 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSBCSC--------CCSS-------HHHHHHHHTTSSBEEECC-------C-------ST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--------CcCC-------HHHHHHHHHCCCEEEEcC-------C-------CC
Confidence 22344455444455566788888743 1111 255888999999999985 1 12
Q ss_pred ccchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCch--HHHHHHHHHH
Q 005131 170 FWDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGM--TAKVKAAVNA 246 (713)
Q Consensus 170 ~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m--~~Kl~aa~~a 246 (713)
++++|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++|+++|+.+++.++ ...+++| .+|++++..+
T Consensus 116 ~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~---~~~~ggm~~~~k~~a~~~a 192 (226)
T 2j4j_A 116 GQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGS---QSVQAGTYELLDPLAIKIV 192 (226)
T ss_dssp TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC-------------CCSCHHHHHHH
T ss_pred CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcC---CCCcCCccccchHHHHHHH
Confidence 5889999999999999999999999999999999 89999999999999999987652 2678999 9999999999
Q ss_pred HHcCCcEEEEeCCCchhHHHHhcCCcceeEEec
Q 005131 247 AYAGIPVVITSGYSDENILKVLQGERIGTLFHQ 279 (713)
Q Consensus 247 ~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~ 279 (713)
.++|++++|+|+++|+++.++++|+..||.+.+
T Consensus 193 ~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 193 ERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp HHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred HHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 999999999999999999999999999999865
No 70
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.97 E-value=1.2e-30 Score=266.02 Aligned_cols=231 Identities=17% Similarity=0.258 Sum_probs=174.7
Q ss_pred ccceEEEEeCccceecCCC-cccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccch
Q 005131 10 DVKRIVVKVGTAVVTRSDG-RLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELD 88 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~-~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (713)
+++++|||||||+++++.+ .++.+.+++++++|+.+++.|+++|||||||..+....+...+. . ...
T Consensus 6 ~~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~~~~~~~-~-------~~~---- 73 (239)
T 1ybd_A 6 KYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSM-D-------RAT---- 73 (239)
T ss_dssp SCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTS-C-------HHH----
T ss_pred CCCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchhHHHcCC-C-------Ccc----
Confidence 4789999999999997643 67888999999999999999999999999976543331111111 1 000
Q ss_pred HHHHHHcchHHHHHHHHHHhhhcCCcccee-eecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCC
Q 005131 89 GKACAAVGQNSIMALYDTLFSELDLTSAQL-LVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSS 167 (713)
Q Consensus 89 ~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~ 167 (713)
......++......++.++|.+.|+++..+ ..+..++.+. +.+ .+.+ .+|+.|.|||+++ . .+
T Consensus 74 ~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~-~~~~-~ll~~g~ipVv~g-----~-------~g 137 (239)
T 1ybd_A 74 ADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAET--YAR-PKAI-QYLEEGKVVIFAA-----G-------TG 137 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCEE--CCH-HHHH-HHHHTTCEEEEES-----T-------TS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecccccccc--hhH-HHHH-HHHhCCcEEEEEC-----C-------cc
Confidence 112333444444445678889999877422 2222222111 111 2445 7899999999985 2 12
Q ss_pred CcccchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHHH
Q 005131 168 GIFWDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNA 246 (713)
Q Consensus 168 g~~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a 246 (713)
.+++|||++|+++|.+|+||+|+|+|||||||++|| .+|++++|++|+++|+.++ +.++|++ +++..+
T Consensus 138 ~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---------g~~~m~~--~a~~~a 206 (239)
T 1ybd_A 138 NPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---------NLKVMDA--TAFALC 206 (239)
T ss_dssp STTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---------TCCSSCH--HHHHHH
T ss_pred CCCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh---------cccccCH--HHHHHH
Confidence 245899999999999999999999999999999999 8999999999999988763 3578866 699999
Q ss_pred HHcCCcEEEEeCCCchhHHHHhcCCcceeEEec
Q 005131 247 AYAGIPVVITSGYSDENILKVLQGERIGTLFHQ 279 (713)
Q Consensus 247 ~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~ 279 (713)
.++|++++|+|+++|+++.++++|+..||.+.+
T Consensus 207 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 207 RERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp HHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred HHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 999999999999999999999999999999853
No 71
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.97 E-value=1.2e-30 Score=266.98 Aligned_cols=232 Identities=20% Similarity=0.253 Sum_probs=172.0
Q ss_pred ccceEEEEeCccceecCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccch
Q 005131 10 DVKRIVVKVGTAVVTRSD-GRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELD 88 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~-~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (713)
+|+++|||||||+++++. +.+|.+.+++++++|+.+++.|+++|||||||..+....+...+. . ...
T Consensus 7 ~~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~g~-~-------~~~---- 74 (247)
T 2a1f_A 7 IYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGM-N-------RVV---- 74 (247)
T ss_dssp SCSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTC-C-------HHH----
T ss_pred cccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHcCC-C-------CCc----
Confidence 478999999999999753 367888999999999999999999999999976554432222111 1 000
Q ss_pred HHHHHHcchHHHHHHHHHHhhhcCCcccee-eecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCC
Q 005131 89 GKACAAVGQNSIMALYDTLFSELDLTSAQL-LVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSS 167 (713)
Q Consensus 89 ~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~ 167 (713)
...+..++......++.++|.+.|+++..+ ..+..++.+. +. ...+..+|+.|.|||++| . .+
T Consensus 75 ~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~~~~~--~~--~~~~~~ll~~g~ipVi~~-----~-------~g 138 (247)
T 2a1f_A 75 GDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDT--YN--WSEAIKMLREKRVVIFSA-----G-------TG 138 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSEE--CC--HHHHHHHHHTTCEEEEES-----T-------TS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeEEecccccccccch--hh--HHHHHHHHhCCCEEEEeC-----C-------cC
Confidence 113334444444455778899999877432 2222222111 11 122478899999999986 1 12
Q ss_pred CcccchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHHH
Q 005131 168 GIFWDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNA 246 (713)
Q Consensus 168 g~~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a 246 (713)
..++|+|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++|+++|+.++ +.++|++ +++..|
T Consensus 139 ~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~~---------g~~~m~~--~aa~~a 207 (247)
T 2a1f_A 139 NPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---------ELKVMDL--SAFTLA 207 (247)
T ss_dssp CSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHT---------TCCSSCH--HHHHHH
T ss_pred CCCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHHc---------CccccCH--HHHHHH
Confidence 245899999999999999999999999999999999 8999999999999988763 3578866 699999
Q ss_pred HHcCCcEEEEeCCCchhHHHHhcCCcceeEEecC
Q 005131 247 AYAGIPVVITSGYSDENILKVLQGERIGTLFHQD 280 (713)
Q Consensus 247 ~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~~ 280 (713)
.++|++++|+|++.|+++.++++|+.+||++...
T Consensus 208 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~ 241 (247)
T 2a1f_A 208 RDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241 (247)
T ss_dssp HHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC
T ss_pred HHcCCcEEEEeCCCchHHHHHHcCCCCceEEeec
Confidence 9999999999999999999999999999999875
No 72
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.97 E-value=1.3e-30 Score=264.60 Aligned_cols=230 Identities=17% Similarity=0.218 Sum_probs=171.4
Q ss_pred ccceEEEEeCccceecCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCccccc-ccCccccc
Q 005131 10 DVKRIVVKVGTAVVTRSD-GRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFAD-LQKPQIEL 87 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~-~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~-~~~~~~~l 87 (713)
+|+++|||+|||+++++. +.+|.+.+++++++|+.+++.|+++|||||||..+.... .. ..+ ++.+..
T Consensus 6 ~~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~-~~-------~~G~~~~~~~-- 75 (240)
T 4a7w_A 6 KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVS-AA-------QGGIIRRTSG-- 75 (240)
T ss_dssp CCCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC-----------------CCCHHHH--
T ss_pred CCCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhH-HH-------hcCCCCCCCH--
Confidence 478999999999999743 378899999999999999999999999999976553321 10 011 222111
Q ss_pred hHHHHHHcchHHHHHHHHHHhhhcCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCC
Q 005131 88 DGKACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSS 167 (713)
Q Consensus 88 ~~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~ 167 (713)
+.+..+.......++..+|.+.|+++ ..++..++.......+ .+.+..+|++|.|||++| + .+
T Consensus 76 --~~~~~la~~~n~~l~~~~l~~~G~~a--v~lt~~d~~~~~~~~~-~~~i~~lL~~g~ipVi~~-----~-------~g 138 (240)
T 4a7w_A 76 --DYMGMLATVINAVAMQEALEHIGLDT--RVQSAIEIKEICESYI-YRKAIRHLEKGRVVIFGA-----G-------TG 138 (240)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTCCE--EEEESSCCTTTSEECC-HHHHHHHHHTTCEEEEES-----T-------TS
T ss_pred --HHHHHHHHHHHHHHHHHHHHHCCCCE--EEecHHHcCcccCcCc-HHHHHHHHHCCCEEEEeC-----C-------CC
Confidence 01111111222234668899999987 3444444332111111 255788999999999986 2 12
Q ss_pred CcccchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHHH
Q 005131 168 GIFWDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNA 246 (713)
Q Consensus 168 g~~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a 246 (713)
.++++||++|+++|.+|+||+|+|+|||||||++|| .+|++++|++++++|+.+. +.++|++ +++..|
T Consensus 139 ~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---------g~~~m~~--~a~~~a 207 (240)
T 4a7w_A 139 NPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---------DIEVMDD--TAISLA 207 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHHS---------SCCSSCH--HHHHHH
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHhc---------CccccHH--HHHHHH
Confidence 336899999999999999999999999999999999 8999999999999887652 3688976 799999
Q ss_pred HHcCCcEEEEeCCCchhHHHHhcCC-cceeEE
Q 005131 247 AYAGIPVVITSGYSDENILKVLQGE-RIGTLF 277 (713)
Q Consensus 247 ~~~gv~v~I~~g~~~~~l~~~~tge-~iGT~i 277 (713)
.++|++++|+|++.|+++...+.|+ .+||++
T Consensus 208 ~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i 239 (240)
T 4a7w_A 208 KDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239 (240)
T ss_dssp HHTTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred HHCCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence 9999999999999999998877666 679986
No 73
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.97 E-value=5.8e-31 Score=272.39 Aligned_cols=236 Identities=23% Similarity=0.231 Sum_probs=168.5
Q ss_pred eEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhcc---Ccccccc--cCccccc
Q 005131 13 RIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLI---NSSFADL--QKPQIEL 87 (713)
Q Consensus 13 ~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~---~~~~~~~--~~~~~~l 87 (713)
++||||||+++. . +++++++|+.+++.|+++|||||||++++..+ ...+.. .....++ +.+...
T Consensus 1 ~iViKlGGs~l~--~-------~~~~~~~i~~l~~~G~~vViVhGgg~~~~~~~-~~~~~~~~~~~~~~g~~~rvt~~~- 69 (269)
T 2egx_A 1 MIVVKVGGAEGI--N-------YEAVAKDAASLWKEGVKLLLVHGGSAETNKVA-EALGHPPRFLTHPGGQVSRLTDRK- 69 (269)
T ss_dssp CEEEEECCSTTC--C-------HHHHHHHHHHHHHHTCCEEEECCCHHHHHHHH-HHTTCCCCC-------CCCCCCHH-
T ss_pred CEEEEECHHHHH--H-------HHHHHHHHHHHHHCCCeEEEEECChHHHHHHH-HHcCCccccccccCCccCcCCCHH-
Confidence 589999999997 3 78999999999999999999999999997653 333322 1112233 333211
Q ss_pred hHHHHHHcchHHHHHHHHHHhhhcCCccceeeeccc----------------------ccCchhHHHHH-HHHHHHHHhC
Q 005131 88 DGKACAAVGQNSIMALYDTLFSELDLTSAQLLVTDN----------------------DFRDKEFRSQL-SETVKSLLSL 144 (713)
Q Consensus 88 ~~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~----------------------~~~~~~~~~~~-~~~i~~~l~~ 144 (713)
..+.+...++-.+...+...|.+.|+++..+.-.+. |+++.+.+..+ .+.|+.+|++
T Consensus 70 ~l~~~~~~~~G~i~~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~~ll~~ 149 (269)
T 2egx_A 70 TLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQA 149 (269)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEETTGGGCEEECBC----------------CCEECCCEECHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHCCCCeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEECHHHHHHHHHC
Confidence 122333332222245678889999988753211110 12222222223 4889999999
Q ss_pred CceeEEcCCCceecCCCcccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeeccccc--h
Q 005131 145 RVIPVFNENDAVSTRKAPYEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKERHQ--G 221 (713)
Q Consensus 145 g~vpV~~g~d~v~~~~~~~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e~~--~ 221 (713)
|.|||+++ +... ..+..+ +|+|++|+++|.+|+||+|+|+|||||||+ || .|++++|++|+++|+. +
T Consensus 150 g~ipVi~~---v~~~-----~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp-~~~a~~i~~i~~~e~~~~~ 219 (269)
T 2egx_A 150 GYLPVLTP---PALS-----YENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLA-RY-PDEASLVREIPVERIEDPE 219 (269)
T ss_dssp TCEEEEEC---CEEE-----TTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSCBC--------CBCCEECHHHHHCHH
T ss_pred CCEEEEcC---cEEC-----CCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCchhhhc-CC-CCCccccccCCHHHhhHHH
Confidence 99999985 2221 133334 999999999999999999999999999999 88 6789999999999998 7
Q ss_pred hhhcCCCCccccCchHHHHHHHHHHHHcCC-cEEEEeCCCchhHHHHhcCCcceeEE
Q 005131 222 EITFGDKSRVGRGGMTAKVKAAVNAAYAGI-PVVITSGYSDENILKVLQGERIGTLF 277 (713)
Q Consensus 222 ~~~~~~~~~~~~g~m~~Kl~aa~~a~~~gv-~v~I~~g~~~~~l~~~~tge~iGT~i 277 (713)
+ . .+++++|+||++++..++++|+ +++|+|++.|+++...+.| .||++
T Consensus 220 l-~-----~~~~ggm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l~g--~GT~i 268 (269)
T 2egx_A 220 Y-L-----ALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALSG--EGTVV 268 (269)
T ss_dssp H-H-----TTSCHHHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHHTT--CSEEE
T ss_pred h-c-----CCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHhCC--CCeEE
Confidence 6 1 3789999999999999999999 7999999999999988877 79986
No 74
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.97 E-value=2.2e-30 Score=267.84 Aligned_cols=231 Identities=17% Similarity=0.211 Sum_probs=178.1
Q ss_pred ceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccchHHH
Q 005131 12 KRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELDGKA 91 (713)
Q Consensus 12 ~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (713)
+++|||||||++++++ .+.+++++++|+.+++. +++|||||||+ +++.+.+ ..... ++ ....+....
T Consensus 37 ~~iVIKlGGs~l~~~~----~~~~~~la~~I~~l~~~-~~vVlVhGGg~-~~~~~~~-~~~~~----g~--~~~~~~~~~ 103 (270)
T 2ogx_B 37 DATVIKIGGQSVIDRG----RAAVYPLVDEIVAARKN-HKLLIGTGAGT-RARHLYS-IAAGL----GL--PAGVLAQLG 103 (270)
T ss_dssp TEEEEEECTTTTGGGC----HHHHHHHHHHHHHHTTT-CEEEEEECCCH-HHHHHHH-HHHHT----TC--CHHHHHHHH
T ss_pred CeEEEEechHHhCCCC----HHHHHHHHHHHHHHhcC-CcEEEEECChH-HHHHHHH-HHHhc----CC--ChHHHHHHH
Confidence 4999999999999853 56799999999999876 99999999998 5554322 11111 11 233455667
Q ss_pred HHHcchHHHHHHHHHHhhhcCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCC-Ccc
Q 005131 92 CAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSS-GIF 170 (713)
Q Consensus 92 ~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~-g~~ 170 (713)
..+.|+.... +..+|.+.|++ .++..|+. .++.+|+.|.|||++|++.+....... ..+ .++
T Consensus 104 ~~a~G~~~l~--~~~~l~~~G~~----~vt~~d~~----------~i~~lL~~g~ipVi~g~~g~~~~~~~~-~~g~~~~ 166 (270)
T 2ogx_B 104 SSVADQNAAM--LGQLLAKHGIP----VVGGAGLS----------AVPLSLAEVNAVVFSGMPPYKLWMRPA-AEGVIPP 166 (270)
T ss_dssp HHHHHHHHHH--HHHHHGGGTCC----BCCSSTTC----------HHHHHCTTCCEEEEECSCTTGGGCCCC-SSSSSCS
T ss_pred HHHHHHHHHH--HHHHHHhcCCc----eecHhhHH----------HHHHHHhCCCEEEEeCCcccccccccc-ccccCCC
Confidence 7888887655 46677788876 34444432 388999999999999855443321111 111 233
Q ss_pred cchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHHHHHc
Q 005131 171 WDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNAAYA 249 (713)
Q Consensus 171 ~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a~~~ 249 (713)
+|+|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++|+++|+.+++..+. ...++|.+|++++. .
T Consensus 167 ~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g~---~~~ggm~~kl~aa~----~ 239 (270)
T 2ogx_B 167 YRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDS---ILEFPVLDLLQSAQ----H 239 (270)
T ss_dssp SCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCCT---TSCHHHHHHHHHCS----S
T ss_pred CCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCCC---cccHHHHHHHHHhh----c
Confidence 999999999999999999999999999999999 899999999999999988775431 23389999988874 4
Q ss_pred CCcEEEEeCCCchhHHHHhcCCcceeEEec
Q 005131 250 GIPVVITSGYSDENILKVLQGERIGTLFHQ 279 (713)
Q Consensus 250 gv~v~I~~g~~~~~l~~~~tge~iGT~i~~ 279 (713)
+++++|+|++.|+++.++++|+..||++.+
T Consensus 240 ~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 240 VREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp CCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred CCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 679999999999999999999999999875
No 75
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.97 E-value=1.1e-30 Score=275.58 Aligned_cols=255 Identities=22% Similarity=0.275 Sum_probs=183.7
Q ss_pred ccceEEEEeCccceecCCC----cccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccc
Q 005131 10 DVKRIVVKVGTAVVTRSDG----RLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQI 85 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~----~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (713)
|++++||||||++|+++++ .++.+.+++++++|+.+++.|+++||||||++++++.+.+..... .+..++. .
T Consensus 1 m~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~--~~~~~~~--~ 76 (314)
T 1e19_A 1 MGKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQ--ATYGIPA--Q 76 (314)
T ss_dssp -CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH--HHHCCCC--C
T ss_pred CCCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcc--ccCCCCh--h
Confidence 5789999999999996542 356678999999999999999999999999999999876543221 1100111 1
Q ss_pred cchHHHHHHcchH--HHHHHHHHHhhhcCCcc------ceeeecccc-------------------------cCch--h-
Q 005131 86 ELDGKACAAVGQN--SIMALYDTLFSELDLTS------AQLLVTDND-------------------------FRDK--E- 129 (713)
Q Consensus 86 ~l~~~~~~~~g~~--~~~~l~~~~l~~~gi~~------~~~~~~~~~-------------------------~~~~--~- 129 (713)
.+........|+. .+..++...|.+.|+++ +++.++..| +++. +
T Consensus 77 ~l~~~~a~~~G~i~~~l~~~l~~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~ 156 (314)
T 1e19_A 77 PMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKED 156 (314)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEEC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCcccccc
Confidence 2222222233433 23566778889999864 244444332 1000 0
Q ss_pred ----H---------HHH-HHHHHHHHHhCCceeEEcCCCceecCCCcccCCC--Cc--ccchhHHHHHHHhhhCCCEEEE
Q 005131 130 ----F---------RSQ-LSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSS--GI--FWDNDSLAALLALELKADLLIL 191 (713)
Q Consensus 130 ----~---------~~~-~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~--g~--~~~sD~~A~~lA~~l~Ad~li~ 191 (713)
+ .+. ..+.|+.+|+.|+|||++||..+... ...++ +. ++|+|++|+++|.+|+||+|+|
T Consensus 157 ~~~~~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~---~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~ 233 (314)
T 1e19_A 157 SGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVI---LEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMI 233 (314)
T ss_dssp TTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEE---EETTEEEECCCCCCHHHHHHHHHHHTTCSEEEE
T ss_pred ccccccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeE---ECCCCcceeEEeccHHHHHHHHHHHcCCCEEEE
Confidence 0 011 24889999999999999864332210 11111 21 3999999999999999999999
Q ss_pred eecCCccccCCCCCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHHHHH-cCCcEEEEeCCCchhHHHHhcC
Q 005131 192 LSDVEGLYSGPPSDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNAAY-AGIPVVITSGYSDENILKVLQG 270 (713)
Q Consensus 192 ~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a~~-~gv~v~I~~g~~~~~l~~~~tg 270 (713)
+|||||||++|| +|++++|++|+++|+.+++..+ .+.+|+|+||++++..+++ .+++++|++ ++.+.++++|
T Consensus 234 lTdVdGvy~~~p-~~~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~---~~~l~~~~~g 306 (314)
T 1e19_A 234 LTDVNGAALYYG-TEKEQWLREVKVEELRKYYEEG---HFKAGSMGPKVLAAIRFIEWGGERAIIAH---LEKAVEALEG 306 (314)
T ss_dssp EESSSSCEETTT-STTCEECCEEEHHHHHHHHHTT---CSCTTTHHHHHHHHHHHHHHTCSEEEEEE---GGGHHHHHTT
T ss_pred eccCCEEECCCC-CCCCeECCEECHHHHHHHHhCC---CcCCCChHHHHHHHHHHHHhCCCeEEEec---HHHHHHHHcC
Confidence 999999999998 6889999999999999987654 4778999999999988666 566799998 4668889998
Q ss_pred CcceeEEec
Q 005131 271 ERIGTLFHQ 279 (713)
Q Consensus 271 e~iGT~i~~ 279 (713)
+ .||++.+
T Consensus 307 ~-~GT~i~~ 314 (314)
T 1e19_A 307 K-TGTQVLP 314 (314)
T ss_dssp S-SSEEEEC
T ss_pred C-CCeEEcC
Confidence 4 7999853
No 76
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.97 E-value=6.2e-30 Score=262.27 Aligned_cols=232 Identities=18% Similarity=0.247 Sum_probs=175.9
Q ss_pred ccceEEEEeCccceecCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccch
Q 005131 10 DVKRIVVKVGTAVVTRSD-GRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELD 88 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~-~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (713)
+++++|||||||+++++. +.++.+.+++++++|+.+++.|+++|||||||+.+....++..+. ...+
T Consensus 6 ~~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~lg~-~~~~----------- 73 (252)
T 1z9d_A 6 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGM-DRVQ----------- 73 (252)
T ss_dssp SCSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTC-CHHH-----------
T ss_pred CCCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHHcCC-CCCc-----------
Confidence 478999999999999753 368888999999999999999999999999976544332222221 1010
Q ss_pred HHHHHHcchHHHHHHHHHHhhhcCCcccee-eecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCC
Q 005131 89 GKACAAVGQNSIMALYDTLFSELDLTSAQL-LVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSS 167 (713)
Q Consensus 89 ~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~ 167 (713)
...+..++......++.++|.+.|+++..+ ..+..++.+. +.+ .+ +..+|+.|.|||++| . .+
T Consensus 74 ~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~~~~--~~~-~~-~~~lL~~g~IpVi~~-----~-------~g 137 (252)
T 1z9d_A 74 ADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEP--YIR-GR-ALRHLEKNRIVVFGA-----G-------IG 137 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTTBEE--CCH-HH-HHHHHHTTCEEEEES-----T-------TS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCc--chH-HH-HHHHHhCCCEEEEeC-----C-------cC
Confidence 012223333444444677889999877432 2222222111 111 23 378999999999986 1 12
Q ss_pred CcccchhHHHHHHHhhhCCCEEEEee-cCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHH
Q 005131 168 GIFWDNDSLAALLALELKADLLILLS-DVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVN 245 (713)
Q Consensus 168 g~~~~sD~~A~~lA~~l~Ad~li~~T-dV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~ 245 (713)
..++|+|++|+++|.+|+||+|+|+| ||||||++|| .+|++++|++|+++|+.+ + +.++| |++++..
T Consensus 138 ~~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~---~------~~~~m--k~~aa~~ 206 (252)
T 1z9d_A 138 SPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIK---R------GLKIM--DATASTL 206 (252)
T ss_dssp CTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHT---T------TCCCS--CHHHHHH
T ss_pred CCCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHh---c------ccccc--CHHHHHH
Confidence 23589999999999999999999999 9999999999 899999999999998865 2 35788 5689999
Q ss_pred HHHcCCcEEEEeCCCchhHHHHhcCCcceeEEecC
Q 005131 246 AAYAGIPVVITSGYSDENILKVLQGERIGTLFHQD 280 (713)
Q Consensus 246 a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~~ 280 (713)
|.++|++++|+|++.|+.+.++++|+..||++.++
T Consensus 207 a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 241 (252)
T 1z9d_A 207 SMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK 241 (252)
T ss_dssp HHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred HHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecC
Confidence 99999999999999999999999999999999875
No 77
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.97 E-value=8.4e-30 Score=261.61 Aligned_cols=236 Identities=15% Similarity=0.181 Sum_probs=173.5
Q ss_pred hhhccceEEEEeCccceecCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccc
Q 005131 7 FVKDVKRIVVKVGTAVVTRSD-GRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQI 85 (713)
Q Consensus 7 ~~~~~~~iViKlGGs~l~~~~-~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (713)
-|+.++++|||||||+++++. +.+|.+.+++++++|+.+.+.|+++|||||||+.+....++..+... . ....
T Consensus 8 ~~~~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~~~~~g~~~-~----~~~~- 81 (255)
T 2jjx_A 8 HMRPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDR-V----EADN- 81 (255)
T ss_dssp --CBCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHTTCCH-H----HHHH-
T ss_pred ccccCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhHHHHcCCCC-C----ChHH-
Confidence 456689999999999999863 36889999999999999999999999999997766443222222110 0 0000
Q ss_pred cchHHHHHHcchHHHHHHHHHHhhh-cCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCccc
Q 005131 86 ELDGKACAAVGQNSIMALYDTLFSE-LDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYE 164 (713)
Q Consensus 86 ~l~~~~~~~~g~~~~~~l~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~ 164 (713)
..+..+ .....++...|.+ .|+++..+ +..+........+....+ .+|+.|.|||++| .
T Consensus 82 ---~~~~~~---~~~~~ll~~~l~~~~Gi~a~~l--~~~~~~~v~~~~~~~~~~-~lL~~g~IpVi~g-----g------ 141 (255)
T 2jjx_A 82 ---IGTLGT---IINSLMLRGVLTSKTNKEVRVM--TSIPFNAVAEPYIRLRAV-HHLDNGYIVIFGG-----G------ 141 (255)
T ss_dssp ---HHHHHH---HHHHHHHHHHHHHHCSSCEEEE--ESSCCCSSSEECCHHHHH-HHHHTTCEEEEES-----T------
T ss_pred ---HhHHHH---HHHHHHHHHHHHhhcCCceEEe--cHHHcCcccCcccHHHHH-HHHhCCcEEEEeC-----C------
Confidence 011222 2222336677888 99987532 221211110011222344 8899999999985 1
Q ss_pred CCCCcccchhHHHHHHHhhhCCCEEEEee-cCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHH
Q 005131 165 DSSGIFWDNDSLAALLALELKADLLILLS-DVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKA 242 (713)
Q Consensus 165 ~~~g~~~~sD~~A~~lA~~l~Ad~li~~T-dV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~a 242 (713)
.+..++++|++|+++|.+|+||+|+|+| ||||||++|| .+|++++|++|+++|+.++ ++++|++ .+
T Consensus 142 -~g~~~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---------G~~~m~~--~a 209 (255)
T 2jjx_A 142 -NGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---------NIQVMDQ--AA 209 (255)
T ss_dssp -TSCSSCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---------TCCSSCH--HH
T ss_pred -CCCCccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc---------CCccCHH--HH
Confidence 1223477899999999999999999999 9999999999 8999999999999887663 3689998 57
Q ss_pred HHHHHHcCCcEEEEeCCCchhHHHHhcCCcceeEEecC
Q 005131 243 AVNAAYAGIPVVITSGYSDENILKVLQGERIGTLFHQD 280 (713)
Q Consensus 243 a~~a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~~ 280 (713)
+..+.++|++++|+|++.|+++.++++|+..||+|.++
T Consensus 210 ~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 210 LLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp HHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred HHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 77777799999999999999999999999999999874
No 78
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.97 E-value=2.2e-30 Score=266.72 Aligned_cols=241 Identities=23% Similarity=0.298 Sum_probs=176.7
Q ss_pred cceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCC-eEEEEecChhhhchHHHhhhhccCcccccccCccccchH
Q 005131 11 VKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGY-EVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELDG 89 (713)
Q Consensus 11 ~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~-~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 89 (713)
|+++|||||||++.+++ .+++++++|+.+.+.|. ++|||||||+.+++. ++..+.......+++.+..+.-.
T Consensus 2 m~~~ViK~GGs~l~~~~------~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~l-l~~~g~~~~~~~glr~t~~~~l~ 74 (258)
T 1gs5_A 2 MNPLIIKLGGVLLDSEE------ALERLFSALVNYRESHQRPLVIVHGGGCVVDEL-MKGLNLPVKKKNGLRVTPADQID 74 (258)
T ss_dssp CCCEEEEECGGGGGCHH------HHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHH-HHHHTCCCCEETTEECBCHHHHH
T ss_pred CccEEEEEChhHhCChH------HHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHH-HHHcCCCcceeCCEeeCCHHHHH
Confidence 67899999999998843 78999999999877655 589999999877775 44444333233345444321100
Q ss_pred HH-HHHcchHHHHHHHHHHhhhcCCccceeeeccc----------ccCchhHHHHHH-HHHHHHHhCCceeEEcCCCcee
Q 005131 90 KA-CAAVGQNSIMALYDTLFSELDLTSAQLLVTDN----------DFRDKEFRSQLS-ETVKSLLSLRVIPVFNENDAVS 157 (713)
Q Consensus 90 ~~-~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~----------~~~~~~~~~~~~-~~i~~~l~~g~vpV~~g~d~v~ 157 (713)
.. ....+. ....+...|.+.|+++..+...+. +++..+..+.+. +.|+.+|++|.|||++|++
T Consensus 75 ~~~~~l~~~--~n~~l~~~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g--- 149 (258)
T 1gs5_A 75 IITGALAGT--ANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIG--- 149 (258)
T ss_dssp HHHHHHHTH--HHHHHHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEE---
T ss_pred HHHHHHhcc--chHHHHHHHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCc---
Confidence 00 111222 222234567888988765433222 222222222233 7899999999999999831
Q ss_pred cCCCcccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeeccccchhhhcCCCCccccCch
Q 005131 158 TRKAPYEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKERHQGEITFGDKSRVGRGGM 236 (713)
Q Consensus 158 ~~~~~~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m 236 (713)
....+..+ +++|++|+.+|.+|+|| |+|+|||||||++| +++|++|+++|+.+++..+ .+++||
T Consensus 150 -----~~~~g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d-----~~~i~~i~~~e~~~l~~~~----~~~gGm 214 (258)
T 1gs5_A 150 -----VTDEGQLMNVNADQAATALAATLGAD-LILLSDVSGILDGK-----GQRIAEMTAAKAEQLIEQG----IITDGM 214 (258)
T ss_dssp -----ECTTSCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTT-----SCBCCEECHHHHHHHHHTT----CSCTHH
T ss_pred -----CCCCCcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECCC-----CCCCcccCHHHHHHHHhcC----CCCCcH
Confidence 11233333 89999999999999999 99999999999984 7999999999999988765 688999
Q ss_pred HHHHHHHHHHHH-cCCcEEEEeCCCchhHHHHhcCCcceeEEe
Q 005131 237 TAKVKAAVNAAY-AGIPVVITSGYSDENILKVLQGERIGTLFH 278 (713)
Q Consensus 237 ~~Kl~aa~~a~~-~gv~v~I~~g~~~~~l~~~~tge~iGT~i~ 278 (713)
.+|++++..+++ ++++++|+|+++|+.+.++++|+..||.+.
T Consensus 215 ~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 215 IVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 999999999876 688999999999999999999999999985
No 79
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.97 E-value=3e-30 Score=265.53 Aligned_cols=244 Identities=20% Similarity=0.254 Sum_probs=181.6
Q ss_pred ceEEEEeCccceecCC--CcccHHHHHHHHHHHHHHHHCC------CeEEEEecChhhhchHHHhhhhccCc---ccccc
Q 005131 12 KRIVVKVGTAVVTRSD--GRLALGRLGALCEQIKELNSQG------YEVILVSSGAVGLGRQRLRYRRLINS---SFADL 80 (713)
Q Consensus 12 ~~iViKlGGs~l~~~~--~~~~~~~~~~~~~~i~~~~~~g------~~vviV~ggg~~i~~~~~~~~~~~~~---~~~~~ 80 (713)
+++|||+||++|++++ +++|.+.+++++++|+.+++.| .++|||||||+.+.. +++..+.... .+...
T Consensus 7 m~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~-~~~~lgi~~~~~~~~~~~ 85 (266)
T 3k4o_A 7 MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHP-VAKKYLKIEDGKKIFINM 85 (266)
T ss_dssp CEEEEEECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHH-HHGGGEEECSSSEEECCH
T ss_pred eEEEEEEchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHHHHH-HHHHcCCCcccCcccccc
Confidence 4799999999999864 4799999999999999998888 999999999877444 3454443331 01100
Q ss_pred cCccccchHHHHHHcchHHHHHHHHHHhhhcCCccceeeecccccCchhHHHHH-HHHHHHHHhCCceeEEcCCCceecC
Q 005131 81 QKPQIELDGKACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQL-SETVKSLLSLRVIPVFNENDAVSTR 159 (713)
Q Consensus 81 ~~~~~~l~~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~g~vpV~~g~d~v~~~ 159 (713)
+ .++.. ...++ ..+...+..+|.+.|+++.++.-.+..+...+ +.+ .+.+..+|++|.|||++ +|++...
T Consensus 86 ~---~G~r~-T~~a~--~~ln~~l~~~l~~~G~~a~~l~~~d~~~~~~g--~~v~~~~i~~lL~~g~ipVi~-~~~~~~~ 156 (266)
T 3k4o_A 86 E---KGFWE-IQRAM--RRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDK--LIFDTSAIKEMLKRNLVPVIH-GDIVIDD 156 (266)
T ss_dssp H---HHHHH-HHHHH--HHHHHHHHHHHHTTTCCEEEECGGGTCEESSS--CBCCCHHHHHHHHTTCEEEEE-CEEEEES
T ss_pred c---CceeH-HHHHH--HHHHHHHHHHHHHCCCcEEEeeHHHcCcccCc--eEecHHHHHHHHHCCCEEEEe-CCEEEcC
Confidence 0 11111 11122 13455577889999998876532221111111 112 37899999999999999 4555442
Q ss_pred CCcccCCCCc-ccchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeeccccchhhhc--CCCCccccCch
Q 005131 160 KAPYEDSSGI-FWDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKERHQGEITF--GDKSRVGRGGM 236 (713)
Q Consensus 160 ~~~~~~~~g~-~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~--~~~~~~~~g~m 236 (713)
.++. ++|+|++|+++|.+|+||+|+|+||||||| .|| +++++++.+|++++++. +..+.+++|+|
T Consensus 157 ------~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~-----~~i~~~~~~e~~~l~~~~~~~~~~~~tGGM 224 (266)
T 3k4o_A 157 ------KNGYRIISGDDIVPYLANELKADLILYATDVDGVL-IDN-----KPIKRIDKNNIYKILNYLSGSNSIDVTGGM 224 (266)
T ss_dssp ------SSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSS-----SBCSEECTTTHHHHHHHHHSTTCSCCSSHH
T ss_pred ------CCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCC-----eecCcCCHHHHHHHHHHhccccCCcccCCH
Confidence 2222 399999999999999999999999999999 654 78999998888877643 33456899999
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchhHHHHhcCCcceeEEecC
Q 005131 237 TAKVKAAVNAAYAGIPVVITSGYSDENILKVLQGERIGTLFHQD 280 (713)
Q Consensus 237 ~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~~ 280 (713)
.+||+++..+++ +++|+|++.|+.+.++++|+.+||++.+.
T Consensus 225 ~~Kv~aa~~a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 225 KYKIEMIRKNKC---RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp HHHHHHHHHTTC---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred HHHHHHHHHHhc---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 999999999887 99999999999999999999999999874
No 80
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.97 E-value=2.5e-30 Score=263.67 Aligned_cols=224 Identities=21% Similarity=0.257 Sum_probs=163.8
Q ss_pred hccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchH--HHhhhhccCcccccccCcccc
Q 005131 9 KDVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQ--RLRYRRLINSSFADLQKPQIE 86 (713)
Q Consensus 9 ~~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~--~~~~~~~~~~~~~~~~~~~~~ 86 (713)
++++++|||||||++++++ ++.+.+++++++|+.+++ |+++|||||||+.+... .++.. ++... .
T Consensus 17 ~~~k~iViKlGGs~l~~~~--~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~~--------gl~~~--~ 83 (244)
T 2brx_A 17 GSHMRIVFDIGGSVLVPEN--PDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKF--------NSSET--F 83 (244)
T ss_dssp --CCEEEEEECHHHHCSSS--CCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTT--------TCCHH--H
T ss_pred hcccEEEEEechhhcCCCC--CCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhchHHHHHHc--------CCCcc--c
Confidence 4578999999999999764 678899999999999999 99999999998655542 11111 11111 1
Q ss_pred chHHHHHHcchHHHHHHHHHHhhhcCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCC
Q 005131 87 LDGKACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDS 166 (713)
Q Consensus 87 l~~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~ 166 (713)
+ .....++......++...|.+.|++. +..+ .+.+..+|+.|.|||++|
T Consensus 84 ~--~~~~~~~~~~~~~l~~~~l~~~g~~~--------~~~~-------~~~i~~lL~~g~IpVi~g-------------- 132 (244)
T 2brx_A 84 K--DFIGIQITRANAMLLIAALREKAYPV--------VVED-------FWEAWKAVQLKKIPVMGG-------------- 132 (244)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHGGGBCSS--------CBCS-------HHHHHHHHHTTCBCEECC--------------
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHcCCCC--------CcCC-------HHHHHHHHhCCCEEEEcC--------------
Confidence 1 12223333333344456788888643 1111 245778999999999985
Q ss_pred CCcccchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHH
Q 005131 167 SGIFWDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVN 245 (713)
Q Consensus 167 ~g~~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~ 245 (713)
+.+++++|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++|+++|+.+++... ....|+|.+|..++..
T Consensus 133 g~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~---g~~~g~m~~~~~~A~~ 209 (244)
T 2brx_A 133 THPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKG---IEKAGSSSVIDPLAAK 209 (244)
T ss_dssp CSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC-----------CCSCHHHHH
T ss_pred CCCCCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhcc---CCCCCCCcchHHHHHH
Confidence 1235689999999999999999999999999999999 78999999999999999887652 1456777665555544
Q ss_pred -HHHcCCcEEEEeCCCchhHHHHhcCCcceeEEec
Q 005131 246 -AAYAGIPVVITSGYSDENILKVLQGERIGTLFHQ 279 (713)
Q Consensus 246 -a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~ 279 (713)
+.+.+++++|+|++.|+.+.++++|+..||++.+
T Consensus 210 ~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 244 (244)
T 2brx_A 210 IIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP 244 (244)
T ss_dssp HHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred HHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence 5558899999999999999999999999999853
No 81
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.97 E-value=4.5e-30 Score=270.88 Aligned_cols=252 Identities=19% Similarity=0.220 Sum_probs=179.6
Q ss_pred ccceEEEEeCccceecCCCccc----HHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccc
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLA----LGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQI 85 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~----~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (713)
|++++|||+|||+|+++ ..+ .+.+++++++|+.+++.|+++|||||||++++..+.+ .+... .+. . ...
T Consensus 1 ~~k~iVIKlGGs~l~~~--~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~-~~~~~-~~~-~--~~~ 73 (310)
T 2we5_A 1 MGKKMVVALGGNAILSN--DASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQ-QQAAD-SEK-N--PAM 73 (310)
T ss_dssp -CCEEEEECCGGGGCCS--SCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHH-HHHTC-SSS-S--CCC
T ss_pred CCcEEEEEEChHHhcCC--CCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHH-cCCCC-CCC-C--CHH
Confidence 45799999999999972 233 3789999999999999999999999999999976433 33222 221 1 111
Q ss_pred cchHHHHHHcchHHHH--HHHHHHhhhcCCcc-------------------------ceeeecccc--------c---Cc
Q 005131 86 ELDGKACAAVGQNSIM--ALYDTLFSELDLTS-------------------------AQLLVTDND--------F---RD 127 (713)
Q Consensus 86 ~l~~~~~~~~g~~~~~--~l~~~~l~~~gi~~-------------------------~~~~~~~~~--------~---~~ 127 (713)
.+....+.+.|+.+.. ..+...|...|++. +.+ ++..+ + .+
T Consensus 74 ~l~~~~a~~~G~l~~~i~~al~~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~-~t~~da~~l~~~~~~~~~~ 152 (310)
T 2we5_A 74 PLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPF-LTEAEAKEAMQAGAIFKED 152 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEE-ECHHHHHHHHTTTCCEEEC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEe-ccHHHHHHHHhcccccccc
Confidence 2323233445555322 22455576666642 111 12111 1 00
Q ss_pred --hhH---------HHHH-HHHHHHHHhCCceeEEcCCCceecCCCcccCCCCc-ccchhHHHHHHHhhhCCCEEEEeec
Q 005131 128 --KEF---------RSQL-SETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGI-FWDNDSLAALLALELKADLLILLSD 194 (713)
Q Consensus 128 --~~~---------~~~~-~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~g~-~~~sD~~A~~lA~~l~Ad~li~~Td 194 (713)
.++ .+.+ .+.|+.+|+.|+|||++||+.+...+.. ..+.. ++|+|++|+++|.+|+||+|+|+||
T Consensus 153 ~~~~~~~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~~~--~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTd 230 (310)
T 2we5_A 153 AGRGWRKVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQE--LKGVEAVIDKDFASEKLAELVDADALVILTG 230 (310)
T ss_dssp TTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEETTT--TEECCCCCCHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCcceeeccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcCCC--CCCcEeecCHHHHHHHHHHHcCCCEEEEEeC
Confidence 011 1112 4899999999999999975544331111 11212 2899999999999999999999999
Q ss_pred CCccccCCCCCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHHHHHcCC--cEEEEeCCCchhHHHHhcCCc
Q 005131 195 VEGLYSGPPSDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNAAYAGI--PVVITSGYSDENILKVLQGER 272 (713)
Q Consensus 195 V~GV~~~dP~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a~~~gv--~v~I~~g~~~~~l~~~~tge~ 272 (713)
|||||+ ||.+|++++|++|+++|+++++..+ .+.+|+|.||+++|..++++|+ +++|++ ++.+.++++|+.
T Consensus 231 VdGVy~-dp~~~~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~ 303 (310)
T 2we5_A 231 VDYVCI-NYGKPDEKQLTNVTVAELEEYKQAG---HFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEI 303 (310)
T ss_dssp CSSCEE-STTSTTCEECCEEEHHHHHHHHHTT---CSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBC
T ss_pred chHhhC-CCCCCCCeECCEEcHHHHHHHhhCC---CCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCC
Confidence 999999 6778899999999999999987664 2566999999999999999999 799997 677889999999
Q ss_pred ceeEEe
Q 005131 273 IGTLFH 278 (713)
Q Consensus 273 iGT~i~ 278 (713)
.||.+.
T Consensus 304 ~GT~i~ 309 (310)
T 2we5_A 304 VGTVVT 309 (310)
T ss_dssp CSEEEE
T ss_pred CCeEEe
Confidence 999885
No 82
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.97 E-value=1.1e-29 Score=261.27 Aligned_cols=258 Identities=21% Similarity=0.271 Sum_probs=184.3
Q ss_pred hhccceEEEEeCccceecCCC----cccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCc
Q 005131 8 VKDVKRIVVKVGTAVVTRSDG----RLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKP 83 (713)
Q Consensus 8 ~~~~~~iViKlGGs~l~~~~~----~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~ 83 (713)
|.+.+++||+|||++|..+.+ ..+.+.++..+++|+.+.+.|++++|+||+|||+|+.++....... ..+
T Consensus 2 ~~~~~~ivvalgGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~~------~~~ 75 (317)
T 3kzf_A 2 MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAG------VSP 75 (317)
T ss_dssp -CCCCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTTS------SSC
T ss_pred CCCCCEEEEEcChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccc------cCC
Confidence 456689999999999965321 3566788999999999999999999999999999987655332111 124
Q ss_pred cccchHHHHHHcchHHHH--HHHHHHhhhcCCccc------eeeecccccCc----------------------------
Q 005131 84 QIELDGKACAAVGQNSIM--ALYDTLFSELDLTSA------QLLVTDNDFRD---------------------------- 127 (713)
Q Consensus 84 ~~~l~~~~~~~~g~~~~~--~l~~~~l~~~gi~~~------~~~~~~~~~~~---------------------------- 127 (713)
.+.|+.-.+.+.|+++.. ..+.+.|.+.|+... +..+..+|...
T Consensus 76 ~~pld~~~A~sqG~igy~l~~al~~~l~~~g~~~~v~t~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~ 155 (317)
T 3kzf_A 76 EMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKIL 155 (317)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEECC--------------------
T ss_pred CCCccccCchhhHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeE
Confidence 456666667777777654 245666777777542 22221111100
Q ss_pred -----hhHHH---------HH-HHHHHHHHhCCceeEEcCCCceecCCCcccCCCCc-ccchhHHHHHHHhhhCCCEEEE
Q 005131 128 -----KEFRS---------QL-SETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGI-FWDNDSLAALLALELKADLLIL 191 (713)
Q Consensus 128 -----~~~~~---------~~-~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~g~-~~~sD~~A~~lA~~l~Ad~li~ 191 (713)
.++++ .+ .+.|+.+|++|.|||++||..+....-.....+.. ++|+|++|+.+|.+|+||+|+|
T Consensus 156 ~ed~grg~RrvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIi 235 (317)
T 3kzf_A 156 REDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMI 235 (317)
T ss_dssp ------CCCCEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEE
T ss_pred eecCCCCeeeecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEE
Confidence 01111 11 38999999999999988633332110000001111 2899999999999999999999
Q ss_pred eecCCccccCCCCCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHHHHHcC-CcEEEEeCCCchhHHHHhcC
Q 005131 192 LSDVEGLYSGPPSDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNAAYAG-IPVVITSGYSDENILKVLQG 270 (713)
Q Consensus 192 ~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a~~~g-v~v~I~~g~~~~~l~~~~tg 270 (713)
+|||||||+ ||.+|++++|++|+++|+++++..+ .+.+|+|.||+++|..+++++ .+++|++ ++.+.++++|
T Consensus 236 LTDVdGVy~-dp~~p~a~~I~~it~~e~~~li~~g---~~~~GGM~pKl~AA~~av~~gg~~v~I~s---~~~l~~~l~G 308 (317)
T 3kzf_A 236 LTDVLNACI-NYKKPDERKLEEIKLSEILALEKDG---HFAAGSMGPKVRAAIEFTQATGKMSIITS---LSTAVDALNG 308 (317)
T ss_dssp CCSSSSCEE-SSSCSSCEECCEEEHHHHHHHHTTT---SCC--CCHHHHHHHHHHHHHHCCCEEECC---GGGHHHHHTT
T ss_pred ecCCCeeeC-CCCCCCCeECcCcCHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHcCCCeEEEcc---hHHHHHHHCC
Confidence 999999999 8877899999999999999988643 477899999999999998755 5599999 5677889999
Q ss_pred CcceeEEec
Q 005131 271 ERIGTLFHQ 279 (713)
Q Consensus 271 e~iGT~i~~ 279 (713)
+ .||++.+
T Consensus 309 ~-~GT~I~~ 316 (317)
T 3kzf_A 309 K-CGTRIIK 316 (317)
T ss_dssp S-SSEEEEC
T ss_pred C-CCeEEec
Confidence 8 7999875
No 83
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.96 E-value=1.7e-29 Score=281.80 Aligned_cols=259 Identities=17% Similarity=0.182 Sum_probs=189.0
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccc-cch
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQI-ELD 88 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~ 88 (713)
.++++|||+||++|++++ +..++++|+.+++.|+++|||||||++++..+ ...+.......+++.+.. .+.
T Consensus 42 ~~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~-~~~~~~~~~~~g~r~t~~~~l~ 113 (456)
T 3d2m_A 42 RGTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLA-AAQGRTPHYCRGLRVTDETSLG 113 (456)
T ss_dssp TTCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTT-TTTTCCCCCGGGCCCBCHHHHH
T ss_pred cCCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-HHCCCCCEeeCCeecCCHHHHH
Confidence 367899999999998753 78999999999999999999999999988764 333333323334444332 222
Q ss_pred HHHHHHcchHHHHHHHHHHhhhcCCcc-----------ceeeecc-------cccCchhHHHHH-HHHHHHHHhCCceeE
Q 005131 89 GKACAAVGQNSIMALYDTLFSELDLTS-----------AQLLVTD-------NDFRDKEFRSQL-SETVKSLLSLRVIPV 149 (713)
Q Consensus 89 ~~~~~~~g~~~~~~l~~~~l~~~gi~~-----------~~~~~~~-------~~~~~~~~~~~~-~~~i~~~l~~g~vpV 149 (713)
. ...++|+.... +.+.|. .|+++ .+++... .|+++.+.++.+ .+.|+.+|+.|.|||
T Consensus 114 ~-~~~~~G~~~~~--l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ipI 189 (456)
T 3d2m_A 114 Q-AQQFAGTVRSR--FEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVW 189 (456)
T ss_dssp H-HHHHHHHHHHH--HHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHHHHHHHTTCEEE
T ss_pred H-HHHHHhHHHHH--HHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHHHHHHHCCCeEE
Confidence 2 22223666553 455666 66655 2222211 134444444333 388999999999999
Q ss_pred EcCCCceecCCCcccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeeccccchhhhcCCC
Q 005131 150 FNENDAVSTRKAPYEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKERHQGEITFGDK 228 (713)
Q Consensus 150 ~~g~d~v~~~~~~~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e~~~~~~~~~~ 228 (713)
++|. .. ...+..+ +|+|++|+++|.+|+||+|+|+|||||||++ ++++|++|+++|+.+++..+
T Consensus 190 i~~~---~~-----~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~-----~~~~i~~i~~~e~~~~~~~g-- 254 (456)
T 3d2m_A 190 MPPL---GH-----SYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP-----DGTLAETLSAQEAQSLAEHA-- 254 (456)
T ss_dssp ECSE---EE-----CTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT-----TSCBCSEEEHHHHHHHHTTC--
T ss_pred ECCc---cc-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC-----CCCccccCCHHHHHHHHhcc--
Confidence 9972 11 1133334 8999999999999999999999999999987 59999999999999887654
Q ss_pred CccccCchHHHHHHHHHHHHcCCc-EEEEeCCCchhH-HHHhcCCcceeEEecCCC-CCCCCCHHHHHHHHHHH
Q 005131 229 SRVGRGGMTAKVKAAVNAAYAGIP-VVITSGYSDENI-LKVLQGERIGTLFHQDAH-ILDPFNEVGAREMAVAA 299 (713)
Q Consensus 229 ~~~~~g~m~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~tge~iGT~i~~~~~-~~~~~t~~~v~~av~~A 299 (713)
.|+|.||+++|..++++|++ ++|+|++.|+++ .++++++..||.+.++.. ..-..+.+|++...+-.
T Consensus 255 ----~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~~~~IR~a~~~D~~~i~~l~ 324 (456)
T 3d2m_A 255 ----ASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIAALI 324 (456)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCCCCEEEECCGGGHHHHHHHH
T ss_pred ----CCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecccceeeCCCCHHHHHHHHHHH
Confidence 39999999999999999997 999999999998 688899999999987521 23345667776655543
No 84
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.96 E-value=4.1e-29 Score=258.80 Aligned_cols=228 Identities=17% Similarity=0.192 Sum_probs=169.2
Q ss_pred ccc-eEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccch
Q 005131 10 DVK-RIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELD 88 (713)
Q Consensus 10 ~~~-~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (713)
+|+ ++||||||| +.+++ .+.+.+++++|+.++ .|+++|||||||+... .+++. ... .+++
T Consensus 37 ~~~~~iVIKiGGs-l~~~~----~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~~-~~~~~-~~~----~gl~------- 97 (276)
T 2ogx_A 37 LLPWLQVVKIGGR-VMDRG----ADAILPLVEELRKLL-PEHRLLILTGAGVRAR-HVFSV-GLD----LGLP------- 97 (276)
T ss_dssp SSTTEEEEEECHH-HHTTT----HHHHHHHHHHHHHHT-TTCEEEEEECCTHHHH-HHHHH-HHH----TTCC-------
T ss_pred hcCCeEEEEEChh-hcCCC----HHHHHHHHHHHHHHh-CCCeEEEEECcHHHHH-HHHhc-cCc----CCCC-------
Confidence 343 899999999 88753 457999999999998 8999999999986654 43442 211 1121
Q ss_pred HHHHHHcchHH---HHHHHHHHhhhcCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccC
Q 005131 89 GKACAAVGQNS---IMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYED 165 (713)
Q Consensus 89 ~~~~~~~g~~~---~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~ 165 (713)
...+..+++.. ...+...++.+.|++... .....+.|+.+|++|.|||++|++.+...+.+
T Consensus 98 ~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~-------------~~~~~~~i~~lL~~g~IpVi~~~~~~~~~e~~--- 161 (276)
T 2ogx_A 98 VGSLAPLAASEAGQNGHILAAMLASEGVSYVE-------------HPTVADQLAIHLSATRAVVGSAFPPYHHHEFP--- 161 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCC-------------HHHHHHHHHHHHHHSSEEEEESSCTTGGGCCS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-------------ccChHHHHHHHHhCCCEEEEcCCccccccccc---
Confidence 12223333221 112334445466663210 11234779999999999999986555421110
Q ss_pred CCC-cccchhHHHHHHHhhhCCCEEEEeecCCccccCCC---CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHH
Q 005131 166 SSG-IFWDNDSLAALLALELKADLLILLSDVEGLYSGPP---SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVK 241 (713)
Q Consensus 166 ~~g-~~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP---~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~ 241 (713)
.++ .+++||++|+++|.+|+||+|+|+|||||||++|| .+|++++|++|+++|+.+++ ++++|+||+.
T Consensus 162 G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~--------g~ggM~~K~~ 233 (276)
T 2ogx_A 162 GSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSE--------GPLPVDRALL 233 (276)
T ss_dssp SSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSC--------SCCSSCHHHH
T ss_pred CCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHh--------CcCChHHHHH
Confidence 112 34899999999999999999999999999999999 47899999999999888865 4799999988
Q ss_pred HHHHHHHcCCcEEEEeCCCchhHHHHhcCCcceeEEecC
Q 005131 242 AAVNAAYAGIPVVITSGYSDENILKVLQGERIGTLFHQD 280 (713)
Q Consensus 242 aa~~a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~~ 280 (713)
++..+.+++++++|+|++.|+++.++++|+..||++.++
T Consensus 234 ~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 234 DVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp HHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred HHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 777766778899999999999999999999999999764
No 85
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=99.96 E-value=3.8e-29 Score=274.91 Aligned_cols=233 Identities=20% Similarity=0.247 Sum_probs=171.3
Q ss_pred cceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccchHH
Q 005131 11 VKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELDGK 90 (713)
Q Consensus 11 ~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (713)
|+++|+|||||++.+. +.+++++++|+.+.+.|+++||||||++..++.+++......... ..-..+
T Consensus 1 m~~iViK~GGssl~~~------~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~~~-------~~~~~d 67 (421)
T 3ab4_A 1 MALVVQKYGGSSLESA------ERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVP-------PAREMD 67 (421)
T ss_dssp -CEEEEEECSGGGSSH------HHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCSSC-------CHHHHH
T ss_pred CCeEEEEEChhHhCCH------HHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhccCC-------CHHHHH
Confidence 6789999999999973 479999999999999999999999987778888777654322111 112234
Q ss_pred HHHHcchHHHHHHHHHHhhhcCCcc-----cee-eecccccCchhHHHHH-HHHHHHHHhCCceeEEcCCCceecC-CCc
Q 005131 91 ACAAVGQNSIMALYDTLFSELDLTS-----AQL-LVTDNDFRDKEFRSQL-SETVKSLLSLRVIPVFNENDAVSTR-KAP 162 (713)
Q Consensus 91 ~~~~~g~~~~~~l~~~~l~~~gi~~-----~~~-~~~~~~~~~~~~~~~~-~~~i~~~l~~g~vpV~~g~d~v~~~-~~~ 162 (713)
.+.+.|+.....++...|++.|+++ .+. +++++.+.. +.+.++ .+.|+.+|++|.|||++|+..+... +
T Consensus 68 ~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~-~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~~~~g-- 144 (421)
T 3ab4_A 68 MLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGN-ARIVDVTPGRVREALDEGKICIVAGFQGVNKETR-- 144 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEECCCC------------------CCHHHHHHHHHTTCEEEC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCC-eeechhhHHHHHHHHhCCCEEEEeCCcCcCCCCC--
Confidence 6667898888878999999999987 333 445444433 233333 3889999999999999982222111 1
Q ss_pred ccCCCCcc--cchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHH
Q 005131 163 YEDSSGIF--WDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAK 239 (713)
Q Consensus 163 ~~~~~g~~--~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~K 239 (713)
.-..+ ++||++|+.+|.+|+||+|+|||||||||++|| .+|++++|++|+++|+.+++.+| .+.|+|
T Consensus 145 ---~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~G------a~v~~~- 214 (421)
T 3ab4_A 145 ---DVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVG------SKILVL- 214 (421)
T ss_dssp ----------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTT------CCSSCH-
T ss_pred ---ceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcC------CcCchH-
Confidence 00111 699999999999999999999999999999999 88999999999999999998765 578888
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhHHHHhcCCcceeEEecC
Q 005131 240 VKAAVNAAYAGIPVVITSGYSDENILKVLQGERIGTLFHQD 280 (713)
Q Consensus 240 l~aa~~a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~~ 280 (713)
+++.++.++|+|++|.|+++| ..||+|.+.
T Consensus 215 -~a~~~a~~~gi~v~I~n~~~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 215 -RSVEYARAFNVPLRVRSSYSN----------DPGTLIAGS 244 (421)
T ss_dssp -HHHHHHHHTTCCEEEEESSSC----------CCCEEECSC
T ss_pred -HHHHHHHHcCCCEEEecCcCC----------CCCeEEEec
Confidence 599999999999999999887 459999763
No 86
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.96 E-value=7.2e-29 Score=249.26 Aligned_cols=213 Identities=21% Similarity=0.213 Sum_probs=155.2
Q ss_pred ceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchH--HHhhhhccCcccccccCccccchH
Q 005131 12 KRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQ--RLRYRRLINSSFADLQKPQIELDG 89 (713)
Q Consensus 12 ~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 89 (713)
+++|||||||+++++ .+.+++++++|+.+++ |+++|||||||+.+... +.+..+. ... .+
T Consensus 1 ~~iViK~GGs~l~~~-----~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~g~--------~~~--~l-- 62 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNE-----SEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARELGA--------SET--FC-- 62 (219)
T ss_dssp CEEEEEECSSTTTTC-----HHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHTTC--------CHH--HH--
T ss_pred CeEEEEeChhhhCCh-----HHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHcCC--------Ccc--ch--
Confidence 479999999999873 3378999999999988 99999999998776663 2222111 111 11
Q ss_pred HHHHHcchHHHHHHHHHHhhhcCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCCCc
Q 005131 90 KACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGI 169 (713)
Q Consensus 90 ~~~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~g~ 169 (713)
..+..++......++..+++.. + .+ +..+ .+.++.+|+.|.|||++| +.+
T Consensus 63 ~~~~~~~~~~~~~l~~~~~~~~-~--~~------~~~~-------~~~i~~ll~~g~ipVi~~--------------g~~ 112 (219)
T 2ij9_A 63 DYIGIAATRLNAMLLISAIPSA-A--KK------VPVD-------FMEAEELSKLYRVVVMGG--------------TFP 112 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTB-C--SS------CCSS-------HHHHHHHHTTCSEEEECC--------------CSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-c--CC------CcCC-------HHHHHHHHHCCCEEEEeC--------------CCC
Confidence 1122222222233344444332 1 11 1111 255889999999999985 123
Q ss_pred ccchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhc-CCCCccccCchHHHH-HHHHHH
Q 005131 170 FWDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITF-GDKSRVGRGGMTAKV-KAAVNA 246 (713)
Q Consensus 170 ~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~-~~~~~~~~g~m~~Kl-~aa~~a 246 (713)
++|+|++|+++|.+|+||+|+|+|||||||++|| .+|++++|++|+++|+.+++.. + ..+|+|.+|. +++..+
T Consensus 113 ~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g----~~~g~~~~~~~~a~~~~ 188 (219)
T 2ij9_A 113 GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSS----AKAGTNVVIDLLAAKII 188 (219)
T ss_dssp SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC---------CCCCCSCHHHHHHH
T ss_pred CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcCC----CCCCCccchHHHHHHHH
Confidence 5789999999999999999999999999999999 7999999999999999888765 3 3467765544 455556
Q ss_pred HHcCCcEEEEeCCCchhHHHHhcCCcceeEE
Q 005131 247 AYAGIPVVITSGYSDENILKVLQGERIGTLF 277 (713)
Q Consensus 247 ~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i 277 (713)
.+++++++|+|+ +|+++.++++|+..||++
T Consensus 189 ~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i 218 (219)
T 2ij9_A 189 ERSKIKTYVILG-TPENIMKAVKGEAVGTVI 218 (219)
T ss_dssp HHHTCCEEEEEC-CHHHHHHHHTTCCCSEEE
T ss_pred HHCCCeEEEEEC-CHhHHHHHHcCCCCCeEe
Confidence 668899999999 999999999999999987
No 87
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.96 E-value=8.5e-29 Score=257.57 Aligned_cols=239 Identities=13% Similarity=0.174 Sum_probs=179.9
Q ss_pred ceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccchHHH
Q 005131 12 KRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELDGKA 91 (713)
Q Consensus 12 ~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (713)
+++|||+||++++++ ++.++++|+.+++.|.++|||||||+++++. ++..+.......++|.++.+--..+
T Consensus 49 ~~iViK~GGsv~~~~--------~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~-l~~~gi~~~~~~G~RvTd~~~l~vv 119 (307)
T 3zzh_A 49 QFAVIKVGGAIISDN--------LHELASCLAFLYHVGLYPIVLHGTGPQVNGR-LEAQGIEPDYIDGIRITDEHTMAVV 119 (307)
T ss_dssp CCEEEEECHHHHHHS--------HHHHHHHHHHHHHBTCCEEEEECCHHHHHHH-HHHTTCCCCEETTEECBCHHHHHHH
T ss_pred CEEEEEEChHHhhch--------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHH-HHHcCCCccccCCeecCCHHHHHHH
Confidence 679999999988762 6799999999999999999999999999986 4555544434456776653211112
Q ss_pred HHHcchHHHHHHHHHHhhhcCCcccee---eecc-----cccCchhHHHHHH-HHHHHHHhCCceeEEcCCCceecCCCc
Q 005131 92 CAAVGQNSIMALYDTLFSELDLTSAQL---LVTD-----NDFRDKEFRSQLS-ETVKSLLSLRVIPVFNENDAVSTRKAP 162 (713)
Q Consensus 92 ~~~~g~~~~~~l~~~~l~~~gi~~~~~---~~~~-----~~~~~~~~~~~~~-~~i~~~l~~g~vpV~~g~d~v~~~~~~ 162 (713)
...+++. ...+.++|.+.|+++..+ +++. .|++..+.+..++ +.|+.+|++|.|||++| +.+
T Consensus 120 ~m~~~~v--n~~lv~~L~~~G~~Av~l~gg~~~a~~~~~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~-~g~------ 190 (307)
T 3zzh_A 120 RKCFLEQ--NLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTS-LAE------ 190 (307)
T ss_dssp HHHHHHH--HHHHHHHHHHTTCCEEEECSSSEEEEESCHHHHBSBEEEEEECCHHHHHHHHHTCEEEECC-CEE------
T ss_pred HHHHHHH--HHHHHHHHHhCCCCeeEEcCCcEEEEecCccccCccccccccCHHHHHHHHHCCCEEEEeC-CeE------
Confidence 2233432 233456788888876432 1111 2566666666665 99999999999999996 222
Q ss_pred ccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeeccc-cchhhhcCCCCccccCchHHHH
Q 005131 163 YEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKER-HQGEITFGDKSRVGRGGMTAKV 240 (713)
Q Consensus 163 ~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e-~~~~~~~~~~~~~~~g~m~~Kl 240 (713)
...+..+ +|+|++|+++|.+|+||+|+|+|||||||++ |++++|++|+++| .++++..+ +++|||.|||
T Consensus 191 -~~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~----~~~~~i~~i~~~e~~~~l~~~~----~~tGGM~~Kl 261 (307)
T 3zzh_A 191 -TASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMKQS----WVKYGTKLKI 261 (307)
T ss_dssp -CTTCBEEBCCHHHHHHHHHHHHCCSEEEEECSSCSCEET----TTTEECCEEEHHHHHHHHHTST----TSCHHHHHHH
T ss_pred -CCCCcEEecCHHHHHHHHHHhCCCCEEEEEeCCcceecC----CCCcCCcccCHHHHHHHHHhCC----CCCCcHHHHH
Confidence 1133334 8999999999999999999999999999986 3799999999976 56777654 6799999999
Q ss_pred HHHHHHHHc---CCcEEEEeCCCchhH-HHHhcCCcceeEEecC
Q 005131 241 KAAVNAAYA---GIPVVITSGYSDENI-LKVLQGERIGTLFHQD 280 (713)
Q Consensus 241 ~aa~~a~~~---gv~v~I~~g~~~~~l-~~~~tge~iGT~i~~~ 280 (713)
+++..|.+. +.+++|++ |+.+ .++++++..||.+.+.
T Consensus 262 ~aa~~a~~~v~~g~~v~I~~---~~~ll~elft~~g~GT~I~~~ 302 (307)
T 3zzh_A 262 REIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (307)
T ss_dssp HHHHHHHHHSCTTCCEEEEC---GGGHHHHHHSCCCCSEEEECC
T ss_pred HHHHHHHHHhccCeEEEEeC---ccHHHHHHhcCCCCcEEEecC
Confidence 976666664 87899998 8887 6889999999999875
No 88
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.95 E-value=1.7e-28 Score=279.52 Aligned_cols=237 Identities=21% Similarity=0.240 Sum_probs=177.3
Q ss_pred cceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccchHH
Q 005131 11 VKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELDGK 90 (713)
Q Consensus 11 ~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (713)
|+++|+|||||++.++ +.+++++++|+.+++.|+++||||||.+..++.+++....... +.. .-..+
T Consensus 1 m~~iViK~GGssl~~~------~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~~~-----~~~--~~~~d 67 (600)
T 3l76_A 1 MALIVQKFGGTSVGTV------ERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISP-----NPC--RREMD 67 (600)
T ss_dssp -CEEEEEECSGGGSSH------HHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHHCS-----SCC--HHHHH
T ss_pred CceEEEEeCCCCcCCH------HHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhhcc-----CCC--HHHHH
Confidence 6789999999999984 4899999999999999999999999966667666654321110 111 11235
Q ss_pred HHHHcchHHHHHHHHHHhhhcCCccc-----ee-eecccccCchhHHHHHH-HHHHHHHhCCceeEEcCCCceecCCCcc
Q 005131 91 ACAAVGQNSIMALYDTLFSELDLTSA-----QL-LVTDNDFRDKEFRSQLS-ETVKSLLSLRVIPVFNENDAVSTRKAPY 163 (713)
Q Consensus 91 ~~~~~g~~~~~~l~~~~l~~~gi~~~-----~~-~~~~~~~~~~~~~~~~~-~~i~~~l~~g~vpV~~g~d~v~~~~~~~ 163 (713)
++.++|+.....++..+|++.|+++. +. +++++.+.. ..+.++. +.+..+|+.|.|||++|+-.....+.+.
T Consensus 68 ~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~-~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g~~~ 146 (600)
T 3l76_A 68 MLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSR-ARILEIRPDRLEHHLREGKVVVVAGFQGISSVEHLE 146 (600)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC--------CCEEEECCHHHHHTTTCEEEEECEEEC----CEE
T ss_pred HHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCC-ceeccccHHHHHHHHhCCCEEEEECCeecCCCCCEE
Confidence 88899999999999999999999853 32 334433322 2222333 6788999999999998721111111001
Q ss_pred cCCCCcccchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHH
Q 005131 164 EDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKA 242 (713)
Q Consensus 164 ~~~~g~~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~a 242 (713)
.+.- ..++||++|+.+|.+|+||+|+|||||||||++|| .+|++++|++|+++|+.+++.+ ++++|+| ++
T Consensus 147 ~~tl-grGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~------G~~vm~p--~a 217 (600)
T 3l76_A 147 ITTL-GRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASL------GAKVLHP--RA 217 (600)
T ss_dssp EECC-CTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGG------GTTTCCH--HH
T ss_pred EecC-CCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhC------CCCccHH--HH
Confidence 1111 12779999999999999999999999999999999 8999999999999999998764 5799999 79
Q ss_pred HHHHHHcCCcEEEEeCCCchhHHHHhcCCcceeEEecC
Q 005131 243 AVNAAYAGIPVVITSGYSDENILKVLQGERIGTLFHQD 280 (713)
Q Consensus 243 a~~a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~~ 280 (713)
+.+|.++|+|++|.|++++ ..||+|...
T Consensus 218 ~~~a~~~gipv~I~n~~~~----------~~GT~I~~~ 245 (600)
T 3l76_A 218 VEIARNYGIPLVVRSSWSD----------EPGTKVVAP 245 (600)
T ss_dssp HHHHHHHTCCEEEEETTCC----------SCCEEEECC
T ss_pred HHHHHHCCCeEEEEECCCC----------CCCeEEecC
Confidence 9999999999999998865 358998764
No 89
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.95 E-value=4.3e-28 Score=265.51 Aligned_cols=242 Identities=14% Similarity=0.141 Sum_probs=185.8
Q ss_pred cceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccchHH
Q 005131 11 VKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELDGK 90 (713)
Q Consensus 11 ~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (713)
.+++|||+||++++++ ++.++++|+.+++.|.++|||||||+++++. ++..+.......++|.+...--..
T Consensus 58 ~~~iViK~GGsv~~~~--------l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~-l~~~gi~~~f~~G~RvTd~~~l~v 128 (460)
T 3s6g_A 58 ERFAVIKVGGAVIQDD--------LPGLASALAFLQTVGLTPVVVHGGGPQLDAA-LEAADIPTERVDGLRVTRDEAMPI 128 (460)
T ss_dssp GGSEEEEECHHHHHHC--------HHHHHHHHHHHHHHTCCCEEEECCHHHHHHH-HHHHSCCCCCCSSSCCBCTTTHHH
T ss_pred CCEEEEEEChHHhhhH--------HHHHHHHHHHHHHCCCcEEEEECCChHHHHH-HHHcCCCccccCCccCCCHHHHHH
Confidence 3689999999977652 6899999999999999999999999999986 444444443445666665432222
Q ss_pred HHHHcchHHHHHHHHHHhhhcCCcccee--------eecccccCchhHHHHHH-HHHHHHHhCCceeEEcCCCceecCCC
Q 005131 91 ACAAVGQNSIMALYDTLFSELDLTSAQL--------LVTDNDFRDKEFRSQLS-ETVKSLLSLRVIPVFNENDAVSTRKA 161 (713)
Q Consensus 91 ~~~~~g~~~~~~l~~~~l~~~gi~~~~~--------~~~~~~~~~~~~~~~~~-~~i~~~l~~g~vpV~~g~d~v~~~~~ 161 (713)
...++++.. ..+.++|.+.|+++..+ .++..+++..+.+..+. +.|+.+|+.|.|||++| +..
T Consensus 129 v~~~lg~vn--~~lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p---~g~--- 200 (460)
T 3s6g_A 129 IRDTLTQAN--LALVDAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILAC---LGE--- 200 (460)
T ss_dssp HHHHHHHHH--HHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECCHHHHHHHHTTCEEEEEC---EEE---
T ss_pred HHHHHHHHH--HHHHHHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcHHHHHHHHHCCcEEEEEC---ceE---
Confidence 333344333 22445778888876432 12334677677766666 99999999999999997 211
Q ss_pred cccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeecc-ccchhhhcCCCCccccCchHHH
Q 005131 162 PYEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKE-RHQGEITFGDKSRVGRGGMTAK 239 (713)
Q Consensus 162 ~~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~-e~~~~~~~~~~~~~~~g~m~~K 239 (713)
...+..+ +|+|++|+++|.+|+||+|+|+|||||||++ ++++|++|+.. |+++++..+ +++|||.||
T Consensus 201 --~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~-----~~~lI~~i~~~~e~~~l~~~~----~~tGGM~~K 269 (460)
T 3s6g_A 201 --TPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDE-----DGDILSSINLATDFGDLMQAD----WVNGGMRLK 269 (460)
T ss_dssp --CTTCCEEEECHHHHHHHHHHHHCCSEEEEECSSCSCBCT-----TSSBCCEEEHHHHHHHHHHCS----SSCHHHHHH
T ss_pred --CCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCCccccCC-----CCeecceeCcHHHHHHHHhcC----CCCCcHHHH
Confidence 1233334 8999999999999999999999999999986 58999999986 778777654 689999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhHH-HHhcCCcceeEEecC
Q 005131 240 VKAAVNAAYAGIPVVITSGYSDENIL-KVLQGERIGTLFHQD 280 (713)
Q Consensus 240 l~aa~~a~~~gv~v~I~~g~~~~~l~-~~~tge~iGT~i~~~ 280 (713)
|+++..+++.+.+++|++++.|+.+. ++++++.+||++.+.
T Consensus 270 l~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 270 LEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp HHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred HHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 99999998843359999999999985 789999999999874
No 90
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.95 E-value=7.9e-28 Score=262.53 Aligned_cols=240 Identities=13% Similarity=0.169 Sum_probs=180.8
Q ss_pred cceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccchHH
Q 005131 11 VKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELDGK 90 (713)
Q Consensus 11 ~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (713)
++++|||+||++++++ ++.++++|+.++..|.++|||||||++++.. ++..+.......++|.++.+--..
T Consensus 48 ~~~iVIK~GGsv~~~~--------l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~-l~~~gi~~~f~~G~RvTd~~tl~v 118 (464)
T 4ab7_A 48 QQFAVIKVGGAIISDN--------LHELASCLAFLYHVGLYPIVLHGTGPQVNGR-LEAQGIEPDYIDGIRITDEHTMAV 118 (464)
T ss_dssp -CCEEEEECHHHHHHC--------HHHHHHHHHHHHHTTCCCEEEECCCHHHHHH-HHHTTCCCCEETTEECBCHHHHHH
T ss_pred CceEEEEECHHHhhch--------HHHHHHHHHHHHHCCCeEEEEECCcHHHHHH-HHHcCCCccccCCeecCCHHHHHH
Confidence 3679999999988762 6799999999999999999999999999996 455555444445677765331111
Q ss_pred HHHHcchHHHHHHHHHHhhhcCCcccee----ee----cccccCchhHHHHHH-HHHHHHHhCCceeEEcCCCceecCCC
Q 005131 91 ACAAVGQNSIMALYDTLFSELDLTSAQL----LV----TDNDFRDKEFRSQLS-ETVKSLLSLRVIPVFNENDAVSTRKA 161 (713)
Q Consensus 91 ~~~~~g~~~~~~l~~~~l~~~gi~~~~~----~~----~~~~~~~~~~~~~~~-~~i~~~l~~g~vpV~~g~d~v~~~~~ 161 (713)
+...+++. ...+..+|.+.|+++..+ +. ...|++..+.+..+. +.|+.+|+.|.|||++| +.+
T Consensus 119 v~mv~~~v--n~~lv~~L~~~G~~Avglsgg~~~a~~~~~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~-~g~----- 190 (464)
T 4ab7_A 119 VRKCFLEQ--NLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTS-LAE----- 190 (464)
T ss_dssp HHHHHHHH--HHHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSBEEEEEECCHHHHHHHHTTCEEEEES-EEE-----
T ss_pred HHHHHHHH--HHHHHHHHHhCCCCeEEECCCcEEEEecCccccCCcCcccccCHHHHHHHHHCCcEEEEcC-CcC-----
Confidence 22233432 333566788888876432 11 123567677766665 99999999999999997 111
Q ss_pred cccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeeccc-cchhhhcCCCCccccCchHHH
Q 005131 162 PYEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKER-HQGEITFGDKSRVGRGGMTAK 239 (713)
Q Consensus 162 ~~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~e-~~~~~~~~~~~~~~~g~m~~K 239 (713)
...+..+ +|+|++|+.+|.+|+||+|+|+|||||||++ |++++|++|+.+| +++++..+ .+++||.||
T Consensus 191 --~~~G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~----~~~~lI~~it~~e~~~~li~~~----~~tgGM~pK 260 (464)
T 4ab7_A 191 --TASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMKQS----WVKYGTKLK 260 (464)
T ss_dssp --CTTCBEEECCHHHHHHHHHHHHCCSEEEEEESSCSEECT----TTCCEECEEEHHHHHHHHHTCS----SCCHHHHHH
T ss_pred --CCCCCEEEecHHHHHHHHHHHcCCCEEEEEecccccccC----CCCcCCcccCHHHHHHHHHhcC----CCCCcHHHH
Confidence 1133344 9999999999999999999999999999987 3799999999976 56677644 688999999
Q ss_pred HHHHHHHHHc---CCcEEEEeCCCchhH-HHHhcCCcceeEEecC
Q 005131 240 VKAAVNAAYA---GIPVVITSGYSDENI-LKVLQGERIGTLFHQD 280 (713)
Q Consensus 240 l~aa~~a~~~---gv~v~I~~g~~~~~l-~~~~tge~iGT~i~~~ 280 (713)
|+++..|++. |.+++|++ ++.+ .++++++.+||++.+.
T Consensus 261 l~aa~aa~~~v~~g~~v~I~~---~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 261 IREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp HHHHHHHHTTSCTTCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred HHHHHHHHHhcccCcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence 9977777764 77799998 6665 5888999999999874
No 91
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.1e-27 Score=260.13 Aligned_cols=241 Identities=18% Similarity=0.173 Sum_probs=181.4
Q ss_pred ceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcccccccCccccchHHH
Q 005131 12 KRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSSFADLQKPQIELDGKA 91 (713)
Q Consensus 12 ~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (713)
+++|||+||+++.++ ++.++++|+.+++.|.++|||||||+++++. ++..+.......++|.+...--...
T Consensus 62 ~~iViK~GG~v~~~~--------l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~-l~~~gi~~~f~~G~RvTd~~~l~vv 132 (467)
T 3s6k_A 62 RFAVVKVGGAVLRDD--------LEALTSSLSFLQEVGLTPIVLHGAGPQLDAE-LSAAGIEKQTVNGLRVTSPHALAIV 132 (467)
T ss_dssp TSCCCCCCHHHHTTC--------CHHHHHHHHHHHTTSCCCCCCCCCCHHHHHH-HHTTSCCCCCCSSSCCBCHHHHHHH
T ss_pred cEEEEEEChHHhhhH--------HHHHHHHHHHHHHCCCcEEEEECCChHHHHH-HHHcCCCccccCCccCCCHHHHHHH
Confidence 689999999977642 5799999999999999999999999999886 4544544434456676553211112
Q ss_pred HHHcchHHHHHHHHHHhhhcCCcccee--------eecccccCchhHHHHHH-HHHHHHHhCCceeEEcCCCceecCCCc
Q 005131 92 CAAVGQNSIMALYDTLFSELDLTSAQL--------LVTDNDFRDKEFRSQLS-ETVKSLLSLRVIPVFNENDAVSTRKAP 162 (713)
Q Consensus 92 ~~~~g~~~~~~l~~~~l~~~gi~~~~~--------~~~~~~~~~~~~~~~~~-~~i~~~l~~g~vpV~~g~d~v~~~~~~ 162 (713)
..++++... .+.++|.+.|+++..+ .++..+++..+.+..+. +.|+.+|+.|.|||++|.+
T Consensus 133 ~~~~g~vn~--~Lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pvg-------- 202 (467)
T 3s6k_A 133 RKVFQASNL--KLVEALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLG-------- 202 (467)
T ss_dssp HHHHHHHHH--HHHHHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSCC--------
T ss_pred HHHHHHHHH--HHHHHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcHHHHHHHHHCCCEEEEECce--------
Confidence 223343322 2334566666655321 12334677677776666 9999999999999998611
Q ss_pred ccCCCCcc-cchhHHHHHHHhhhCCCEEEEeecCCccccCCCCCCCCcceeeeecc-ccchhhhcCCCCccccCchHHHH
Q 005131 163 YEDSSGIF-WDNDSLAALLALELKADLLILLSDVEGLYSGPPSDPQSKLIDTYVKE-RHQGEITFGDKSRVGRGGMTAKV 240 (713)
Q Consensus 163 ~~~~~g~~-~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP~~~~a~~i~~is~~-e~~~~~~~~~~~~~~~g~m~~Kl 240 (713)
....+..+ +|+|++|+.+|.+|+||+|+|+|||||||+. ++++|++|+.. |+++++..+ +++|||.|||
T Consensus 203 ~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~-----~~~lI~~i~~~~e~~~l~~~~----~~tGGM~~Kl 273 (467)
T 3s6k_A 203 ETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDA-----EGKLIDSINLSTEYDHLMQQP----WINGGMRVKI 273 (467)
T ss_dssp CCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCS-----SCCCCCCCCTTTTTHHHHTSS----SCCSHHHHHH
T ss_pred ECCCCcEEecCHHHHHHHHHHhcCCCEEEEEecccceeCC-----CCCCccccChHHHHHHHHhcC----CCCCchHHHH
Confidence 11123333 8999999999999999999999999999986 58999999986 777777644 6799999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhHH-HHhcCCcceeEEecC
Q 005131 241 KAAVNAAYAGIPVVITSGYSDENIL-KVLQGERIGTLFHQD 280 (713)
Q Consensus 241 ~aa~~a~~~gv~v~I~~g~~~~~l~-~~~tge~iGT~i~~~ 280 (713)
+++..+++.+.+++|++++.|+.+. ++++++.+||++.+.
T Consensus 274 ~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 274 EQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG 314 (467)
T ss_dssp HHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred HHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence 9999998844459999999999985 788999999999874
No 92
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=99.94 E-value=3.6e-26 Score=254.32 Aligned_cols=243 Identities=13% Similarity=0.149 Sum_probs=181.4
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcc-ccc---------
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSS-FAD--------- 79 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~-~~~--------- 79 (713)
+++++|.|||||++.+. +.++++++.|... .++++|+|+|+.+.+|+.+++........ ...
T Consensus 25 ~~~~~V~KFGGTSva~~------e~i~~va~iI~~~--~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~~~~~~~~~~~~~ 96 (510)
T 2cdq_A 25 KGITCVMKFGGSSVASA------ERMKEVADLILTF--PEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSI 96 (510)
T ss_dssp CCCCEEEEECTGGGSSH------HHHHHHHHHHHHC--TTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHHH
T ss_pred CCCeEEEEECCcccCCH------HHHHHHHHHHHhc--cCCCEEEEEcCCCCCchHHHHHHHHHhhccccchhHHHHHHH
Confidence 45789999999999984 4789999999643 35788999999999999987654321000 000
Q ss_pred cc----------------------------------CccccchHHHHHHcchHHHHHHHHHHhhhcCCccc-----ee-e
Q 005131 80 LQ----------------------------------KPQIELDGKACAAVGQNSIMALYDTLFSELDLTSA-----QL-L 119 (713)
Q Consensus 80 ~~----------------------------------~~~~~l~~~~~~~~g~~~~~~l~~~~l~~~gi~~~-----~~-~ 119 (713)
+. .....-..+.+.+.|+..+..++...|++.|+++. +. +
T Consensus 97 i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l 176 (510)
T 2cdq_A 97 IKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGF 176 (510)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTC
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeE
Confidence 00 00001223678889999999999999999999863 44 6
Q ss_pred ecccccCch----hHHHHHHHHHHH-HHhCCceeEEcCCCceec-CCCcccCCCCcccchhHHHHHHHhhhCCCEEEEee
Q 005131 120 VTDNDFRDK----EFRSQLSETVKS-LLSLRVIPVFNENDAVST-RKAPYEDSSGIFWDNDSLAALLALELKADLLILLS 193 (713)
Q Consensus 120 ~~~~~~~~~----~~~~~~~~~i~~-~l~~g~vpV~~g~d~v~~-~~~~~~~~~g~~~~sD~~A~~lA~~l~Ad~li~~T 193 (713)
+++.++... ..+.+..+.+.. +++.|.|||++|+-.... .+.. +. -..++||++|+.+|.+|+||.|++||
T Consensus 177 ~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~~~~g~i--tt-lgrGgsD~tAa~lA~~l~Ad~l~i~T 253 (510)
T 2cdq_A 177 ITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAV--TT-LGRGGSDLTATTIGKALGLKEIQVWK 253 (510)
T ss_dssp EECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETTTCCE--EE-CCTTHHHHHHHHHHHHHTCSEEEEEE
T ss_pred EEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccCCCCCce--EE-eCCCChHHHHHHHHHHcCCCEEEEEe
Confidence 676666543 233345555664 779999999987222211 1100 00 01267999999999999999999999
Q ss_pred cCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHHHHHcCCcEEEEeCCCchhHHHHhcCCc
Q 005131 194 DVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNAAYAGIPVVITSGYSDENILKVLQGER 272 (713)
Q Consensus 194 dV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~tge~ 272 (713)
||||||++|| .+|++++|++|+++|+.++.. +++++||| +++.++.++|||++|.|+++|+ .
T Consensus 254 DVdGVytaDPr~v~~A~~I~~Is~~E~~ela~------~Ga~vmh~--~a~~~a~~~gIpv~I~n~~~p~---------~ 316 (510)
T 2cdq_A 254 DVDGVLTCDPTIYKRATPVPYLTFDEAAELAY------FGAQVLHP--QSMRPAREGEIPVRVKNSYNPK---------A 316 (510)
T ss_dssp SSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHH------HHSSCCCH--HHHHHHHHHTCCEEEEETTSTT---------S
T ss_pred CCCCcCCCCCCCCCCCEEecEeCHHHHHHHHh------cCcchhHH--HHHHHHHHCCCeEEEEccCcCC---------C
Confidence 9999999999 899999999999999999876 45799999 5999999999999999999984 5
Q ss_pred ceeEEecC
Q 005131 273 IGTLFHQD 280 (713)
Q Consensus 273 iGT~i~~~ 280 (713)
.||+|.+.
T Consensus 317 ~GT~I~~~ 324 (510)
T 2cdq_A 317 PGTIITKT 324 (510)
T ss_dssp CCEEEESC
T ss_pred CCeEEecc
Confidence 79999864
No 93
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.94 E-value=1.1e-26 Score=255.86 Aligned_cols=241 Identities=18% Similarity=0.172 Sum_probs=178.9
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHhhhhccCcc-----ccc-----
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLRYRRLINSS-----FAD----- 79 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~~~~~~~~~-----~~~----- 79 (713)
||+++|.|||||++.+. +.++++++.|.. ...++|+|+|+.+.+|+.+++........ +..
T Consensus 1 mm~~~V~KFGGTSv~~~------e~i~~va~ii~~---~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~i~~i~~~~ 71 (449)
T 2j0w_A 1 MSEIVVSKFGGTSVADF------DAMNRSADIVLS---DANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQ 71 (449)
T ss_dssp --CCEEEEECSGGGSSH------HHHHHHHHHHTS---CTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CCccEEEEECCccCCCH------HHHHHHHHHHHh---cCCCEEEEeCCCCchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 47889999999999984 478888888853 34589999999999999887754331000 000
Q ss_pred ------ccC------------------------ccccchHHHHHHcchHHHHHHHHHHhhhcCCcc-----ceeeecccc
Q 005131 80 ------LQK------------------------PQIELDGKACAAVGQNSIMALYDTLFSELDLTS-----AQLLVTDND 124 (713)
Q Consensus 80 ------~~~------------------------~~~~l~~~~~~~~g~~~~~~l~~~~l~~~gi~~-----~~~~~~~~~ 124 (713)
+.. ....-..+++.++|+..+..++...|++.|+++ .+.++++.+
T Consensus 72 ~~i~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~ 151 (449)
T 2j0w_A 72 FAILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDR 151 (449)
T ss_dssp HHHHTTSSSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSC
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCC
Confidence 000 001223468889999999999999999999988 566777777
Q ss_pred cCchhHH-----HHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCCCcccchhHHHHHHHhhhCCCEEEEeecCCccc
Q 005131 125 FRDKEFR-----SQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEGLY 199 (713)
Q Consensus 125 ~~~~~~~-----~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~g~~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~ 199 (713)
+++.... .+..+.++.+++.+ |||++|+-.....+ ..+ .-..++||++|+.+|.+|+||+|+|||||||||
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~l~~~~-IpVv~Gf~g~~~~g--~~t-tl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~ 227 (449)
T 2j0w_A 152 FGRAEPDIAALAELAALQLLPRLNEG-LVITQGFIGSENKG--RTT-TLGRGGSDYTAALLAEALHASRVDIWTDVPGIY 227 (449)
T ss_dssp TTSCCBCHHHHHHHHHHHTHHHHHHS-EEEEESSEEECTTS--CEE-ECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEE
T ss_pred CCCccccHhHhHHHHHHHHHHHhcCC-EEEEeCCeeeCCCC--CEE-EeCCCChHHHHHHHHHHCCCCEEEEccccCCcC
Confidence 6653321 22345677777555 99998722221111 000 001167999999999999999999999999999
Q ss_pred cCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHHHHHcCCcEEEEeCCCchhHHHHhcCCcceeEEe
Q 005131 200 SGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNAAYAGIPVVITSGYSDENILKVLQGERIGTLFH 278 (713)
Q Consensus 200 ~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~ 278 (713)
++|| .+|++++|++|+++|+.+++..| .+.||| +++.++.++|+|++|.|+++|+ ..||++.
T Consensus 228 ~~DPr~~~~a~~i~~is~~e~~ela~~G------~kvlh~--~a~~~a~~~gi~v~I~~~~~p~---------~~GT~I~ 290 (449)
T 2j0w_A 228 TTDPRVVSAAKRIDEIAFAEAAEMATFG------AKVLHP--ATLLPAVRSDIPVFVGSSKDPR---------AGGTLVC 290 (449)
T ss_dssp SSCTTTCTTCCEESEEEHHHHHHHHHTT------CTTSCT--TTHHHHHHHTCCEEEEESSCTT---------SCCEEEE
T ss_pred cCCCCCCCCCEEccCccHHHHHHHHhcC------CccchH--HHHHHHHHCCCeEEEEECCCCC---------CCeeEEe
Confidence 9999 89999999999999999987754 788898 6999999999999999999984 6799998
Q ss_pred cC
Q 005131 279 QD 280 (713)
Q Consensus 279 ~~ 280 (713)
+.
T Consensus 291 ~~ 292 (449)
T 2j0w_A 291 NK 292 (449)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 94
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.94 E-value=1.3e-26 Score=253.89 Aligned_cols=238 Identities=15% Similarity=0.114 Sum_probs=176.7
Q ss_pred ceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChh-------hhchHHHhhhhccCcc--cc----
Q 005131 12 KRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAV-------GLGRQRLRYRRLINSS--FA---- 78 (713)
Q Consensus 12 ~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~-------~i~~~~~~~~~~~~~~--~~---- 78 (713)
+++|.|||||++.+. +.++++++.|+. .+.+++||+|+.+ .+|+.+++........ +.
T Consensus 3 ~m~V~KFGGtSva~~------e~i~~Va~iI~~---~~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~~~~~~~~~ 73 (446)
T 3tvi_A 3 KIVVTKFGGSSLADS------NQFKKVKGIIDS---DANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFDDVFK 73 (446)
T ss_dssp -CEEEEECGGGGSSH------HHHHHHHHHHTT---CTTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ccEEEEeCccccCCH------HHHHHHHHHHHh---cCCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcCccHHHHHH
Confidence 478999999999984 478899988874 4778999999987 4888887765432111 00
Q ss_pred cccCccc-------------------------cchHHHHHHcchHHHHHHHHHHhhhcCCccceeeecccccCchhHHHH
Q 005131 79 DLQKPQI-------------------------ELDGKACAAVGQNSIMALYDTLFSELDLTSAQLLVTDNDFRDKEFRSQ 133 (713)
Q Consensus 79 ~~~~~~~-------------------------~l~~~~~~~~g~~~~~~l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (713)
.++.... .-..+.+.+.|+..+..++...|....+.+.++.++++ ........
T Consensus 74 ~i~~~~~~i~~~L~~~~~~~~~l~~~~~~l~~~~~~D~lls~GE~lS~~lla~~l~a~~~~~~~~~~~~~--~~~~~~~~ 151 (446)
T 3tvi_A 74 LISQRYTEIVSELNIDMDIAYYLEKVKKNIENGASSDYAASRGEYLNGVILAKYLNAEFIDAAEVIFFDK--SGCFDEKK 151 (446)
T ss_dssp HHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCEECCGGGTCBBCC----CBCHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCccHHHHHHhHHHHHHHHHHHHhcceeECHHHheeeCC--CCceehHh
Confidence 0000000 01246788999999999999999888888888777655 22222222
Q ss_pred HHHHHHHHHhCCceeEEcCCCceecCCCcccCCCCcccchhHHHHHHHhhhCCCEEEEeecCCccccCCC-CCCCCccee
Q 005131 134 LSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYSGPP-SDPQSKLID 212 (713)
Q Consensus 134 ~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~g~~~~sD~~A~~lA~~l~Ad~li~~TdV~GV~~~dP-~~~~a~~i~ 212 (713)
..+.+..+|+.|.|||++|+-..... +..+. -..++||++|+.+|.+|+||+|++||||||||++|| .+|++++|+
T Consensus 152 ~~~~l~~~l~~~~v~Vv~Gf~g~~~~--g~~~t-l~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~ 228 (446)
T 3tvi_A 152 SYEKIKEKVLSCNKAVIPGFYGSSFN--GDVKT-FSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTIS 228 (446)
T ss_dssp HHHHHHHHTTTCSSEECCCSEEECTT--SCEEE-CSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCS
T ss_pred hHHHHHHHHhcCCeEEeeCceecCCC--CCeEE-EccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcc
Confidence 34889999999999999872221111 10000 001689999999999999999999999999999999 899999999
Q ss_pred eeeccccchhhhcCCCCccccCchHHHHHHHHHHHHcCCcEEEEeCCCchhHHHHhcCCcceeEEecC
Q 005131 213 TYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNAAYAGIPVVITSGYSDENILKVLQGERIGTLFHQD 280 (713)
Q Consensus 213 ~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~tge~iGT~i~~~ 280 (713)
+|+++|+.+++.+| .++|+| +++.++.++|||++|.|+++|+ ..||+|.+.
T Consensus 229 ~is~~e~~ela~~G------a~vl~~--~a~~~a~~~~ipi~i~~~~~p~---------~~GT~i~~~ 279 (446)
T 3tvi_A 229 KISYKELRELSYMG------ATVLHE--EAIFPVKDSGIPINIKNTNKPS---------DPGTLILSD 279 (446)
T ss_dssp EEEHHHHHHTTTC----------CCS--TTTHHHHHSSCCEEEEETTBTT---------SCCEEEECT
T ss_pred eeCHHHHHHHHhCC------CCcchH--HHHHHHHHcCCeEEEecCCCCC---------CCCEEEecC
Confidence 99999999987654 789999 7999999999999999999883 669999874
No 95
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.93 E-value=1.8e-26 Score=256.74 Aligned_cols=242 Identities=20% Similarity=0.259 Sum_probs=182.9
Q ss_pred ceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCC-eEEEEecChhhhchHHHhhhhccCc--ccc-------c--
Q 005131 12 KRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGY-EVILVSSGAVGLGRQRLRYRRLINS--SFA-------D-- 79 (713)
Q Consensus 12 ~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~-~vviV~ggg~~i~~~~~~~~~~~~~--~~~-------~-- 79 (713)
+++|.|||||++.+. +.++++++.|+.. +.++ ++|+|+|+.+.+|+.++........ ... .
T Consensus 1 ~~~V~KFGGtSv~~~------~~i~~va~ii~~~-~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~ 73 (473)
T 3c1m_A 1 MTTVMKFGGTSVGSG------ERIRHVAKIVTKR-KKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIR 73 (473)
T ss_dssp -CEEEEECTTTTSSH------HHHHHHHHHHHHH-HTTCSCEEEEECCSTTHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCCH------HHHHHHHHHHHHh-hcCCCCEEEEEcCChhhHHHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 368999999999984 4899999999876 6788 9999999999999998875433211 000 0
Q ss_pred ---------ccCc----c--------------------------ccchHHHHHHcchHHHHHHHHHHhhhcCCccc----
Q 005131 80 ---------LQKP----Q--------------------------IELDGKACAAVGQNSIMALYDTLFSELDLTSA---- 116 (713)
Q Consensus 80 ---------~~~~----~--------------------------~~l~~~~~~~~g~~~~~~l~~~~l~~~gi~~~---- 116 (713)
+... . ..-..+.+.++|+.....++...|++.|+++.
T Consensus 74 ~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~ 153 (473)
T 3c1m_A 74 EKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEG 153 (473)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 0000 0 00113466677888888888999999999884
Q ss_pred -ee-eecccccCchhH-HHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCCCcccchhHHHHHHHhhhCCCEEEEee
Q 005131 117 -QL-LVTDNDFRDKEF-RSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGIFWDNDSLAALLALELKADLLILLS 193 (713)
Q Consensus 117 -~~-~~~~~~~~~~~~-~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~g~~~~sD~~A~~lA~~l~Ad~li~~T 193 (713)
+. ++++.+++.... .....+.++.+|+.|+|||++|+-.....+.. .. -..++||++|+.+|.+|+||+|+|||
T Consensus 154 ~~~~i~t~~~~~~~~~~~~~~~~~i~~ll~~g~ipVv~G~~g~~~~g~~--~~-l~rg~sD~~Aa~lA~~l~Ad~l~i~T 230 (473)
T 3c1m_A 154 GEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYI--TT-LGRGGSDYSAALIGYGLDADIIEIWT 230 (473)
T ss_dssp HHHTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEEETTSCE--EE-CCTTTHHHHHHHHHHHTTCSEEEEEE
T ss_pred hheeEEEccCCCCccccHhhhHHHHHHHHhCCcEEEEeCCcccCCCCCE--EE-eCCCChHHHHHHHHHHcCCCEEEEee
Confidence 33 567666665333 23335888899999999999973222211100 00 01279999999999999999999999
Q ss_pred cCCccccCCC-CCCCCcceeeeeccccchhhhcCCCCccccCchHHHHHHHHHHHHcCCcEEEEeCCCchhHHHHhcCCc
Q 005131 194 DVEGLYSGPP-SDPQSKLIDTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVNAAYAGIPVVITSGYSDENILKVLQGER 272 (713)
Q Consensus 194 dV~GV~~~dP-~~~~a~~i~~is~~e~~~~~~~~~~~~~~~g~m~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~tge~ 272 (713)
||||||++|| .+|++++|++|+++|+.++..+| .++|+|| ++..+.++|+|++|+|++.|+ .
T Consensus 231 DVdGv~~~dP~~~~~a~~i~~is~~e~~~l~~~g------~~~m~~~--a~~~a~~~gi~v~I~~~~~~~---------~ 293 (473)
T 3c1m_A 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFG------AKVLHPR--TIEPAMEKGIPILVKNTFEPE---------S 293 (473)
T ss_dssp SSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTT------CTTSCGG--GHHHHHHHTCCEEEEETTSTT---------S
T ss_pred CCCcceeCCCCCCCCCeEecccCHHHHHHHHhcC------CcchHHH--HHHHHHHcCCEEEEEecCCCC---------C
Confidence 9999999999 88999999999999999987654 6899995 999999999999999999984 6
Q ss_pred ceeEEecC
Q 005131 273 IGTLFHQD 280 (713)
Q Consensus 273 iGT~i~~~ 280 (713)
.||++.+.
T Consensus 294 ~GT~i~~~ 301 (473)
T 3c1m_A 294 EGTLITND 301 (473)
T ss_dssp CCEEEESC
T ss_pred ceEEEecc
Confidence 79999863
No 96
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=97.09 E-value=0.16 Score=53.92 Aligned_cols=281 Identities=14% Similarity=0.144 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhcccCccccccccccccCCceeeeeeccceeEEEEecC--Cch--HHHHHHHHHHHhCCE--EEEeCC
Q 005131 362 KISSLANSVRVLANMEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES--RPD--ALVQIAALAIRSGNG--LLLKGG 435 (713)
Q Consensus 362 ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~--~P~--~~~~~~~~ALaaGN~--vv~Kps 435 (713)
.++.+++.++.|.....+..... ...+|.....+..|+--|++..|- .|+ .....+.||-.||+. |+.-|.
T Consensus 93 ai~~A~~~I~~fh~~Q~~~~~~~---~~~~G~~~g~~~~Pi~~VGlYVPGG~A~ypSsvLM~aiPAkVAGV~~Iv~~tPp 169 (423)
T 4gic_A 93 ALREAAERIRAYAERQKLDSWDY---READGTLLGQKITPLDRVGLYVPGGKAAYPSSVLMNAVPAKVAGVPELIMAVPA 169 (423)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEE---ECTTSCEEEEEEEECSEEEEECCCSTTCCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHhcccCCccc---ccCCCCEEEEEEEEecceeEEeeCCCCchhhHHHHhhccHHHhCCCeEEEecCC
Confidence 45566677777765222211111 113566777899999999999996 454 335788899999986 334454
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCeEEEec-CCchhHHhhh----cCCCccEEEecCCHHHHHHHHHhcCCCeEEe-cC
Q 005131 436 KEAKRSNAILHKIITEVIPENVGERLIGLVT-SREEIPDLLK----LDDVIDLVIPRGSNRLVSQIKESTKIPVLGH-AD 509 (713)
Q Consensus 436 ~~~~~~~~~l~~~~~~al~~glP~g~v~vv~-g~~~~~~~l~----~~~~v~~v~fTGs~~~g~~i~~~~~~~v~lE-lg 509 (713)
+........|+ ..+.+ | +=.+.. |+...-.+|. +=|.||+|+=-|..=+..+=..-.+. |-.. .-
T Consensus 170 ~~G~i~p~iL~-AA~l~---G----v~eIy~vGGAQAIAAlAyGTetI~~VDkIvGPGN~yVa~AKr~v~g~-VgIDm~A 240 (423)
T 4gic_A 170 PRGELNALVLA-AAYIS---G----VDRVFRIGGAQAVAALAYGTETVPRVDKIVGPGNIYVATAKKLVFGQ-VGIDMVA 240 (423)
T ss_dssp GGGCCCHHHHH-HHHHH---T----CCEEECCCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHBTT-BEECCCC
T ss_pred CCCCccHHHHH-HHHhc---C----CcEEEEcCChhhhhhhccCCCcccceeEEecCCcHHHHHHHHHhcCC-cCccccc
Confidence 43222122222 22334 5 444444 6533223332 35889999999997654333332221 2111 12
Q ss_pred ccce--EEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHHHHHhCCCEEEcCCccccccCCCCC
Q 005131 510 GICH--IYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDNLRSEGVTLYGGPRASSLLNIPEP 586 (713)
Q Consensus 510 G~~p--~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~~~~~~Ga~l~gg~~~~~~~~v~~~ 586 (713)
|.+= +|-+++||.+.. .+.+..+= + |- .| +-++|..+ .+|.+++.++..++=..+ +..
T Consensus 241 GPSEilViAD~~a~p~~vAaDLlsQAE-H-d~--~a-~~iLvT~s--~~la~~V~~~i~~~l~~l------------~r~ 301 (423)
T 4gic_A 241 GPSEILVISDGRTDPDWIAMDLFSQAE-H-DE--DA-QAILISPD--AAHLEAVQASIERLLPGM------------ERA 301 (423)
T ss_dssp CCCEEEEEECSCSCHHHHHHHHHHHHT-T-CT--TC-EEEEEESC--HHHHHHHHHHHHHHGGGC------------TTH
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhhc-c-CC--CC-eEEEEeCc--HHHHHHHHHHHHHHHhhC------------ccH
Confidence 2222 344556999998 55554431 1 11 11 33666655 556666654443211100 111
Q ss_pred CCccc--cccCceEEEEEeCCHHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccC-eeeEEEcCCCCC---------CC
Q 005131 587 NSFHH--EYNSMACTIEIVDDVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVD-SAAVFHNASTRF---------CD 654 (713)
Q Consensus 587 ~~~~e--E~FgPvl~v~~~~~~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~-~G~v~iN~~~~~---------~~ 654 (713)
.+.+. +-+| .++.++|++||++++|..-. =..-|.++|.. .+..+++ +|.|++-.++.. +.
T Consensus 302 ~i~~~sl~~~g---~ii~v~~~~ea~~~~N~~AP-EHLel~~~~~~---~~l~~i~nAGaIFlG~~tp~~~GDY~aG~NH 374 (423)
T 4gic_A 302 EVIRTSLERRG---GMILVDDLEQAAAVANRIAP-EHLELSVESPE---VLVESIRNAGAIFMGRYTAEALGDYCAGPNH 374 (423)
T ss_dssp HHHHHHHHHHC---EEEECSSHHHHHHHHHHHCC-SEEEEESSCHH---HHGGGCCCCSEEEEC----------------
T ss_pred HHHHHHHhcCc---eEEEEeehHHHHHHHHhhCh-HHhhhhhCCHH---HHHhhCcEeceeecCCCCchhhhhcCcCCCc
Confidence 11111 1233 45678999999999999653 35788899964 4667776 999999876421 23
Q ss_pred CCCccCccceeeccccCCCcccchHhhceeEEEEE
Q 005131 655 GARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 689 (713)
Q Consensus 655 ~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~ 689 (713)
-+|-+ |..| ..|.-+.+.|+..-++.
T Consensus 375 vLPT~-----G~Ar----~~sgLsv~~F~K~~s~~ 400 (423)
T 4gic_A 375 VLPTS-----GTAR----FSSPLGVYDFQKRSSLI 400 (423)
T ss_dssp CCCCT-----TGGG----TCCCCCGGGGEEEEEEE
T ss_pred cCCCC-----Cccc----ccCCCCHHHeeeeeeEE
Confidence 35554 5555 56778888998776665
No 97
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=96.95 E-value=0.28 Score=52.05 Aligned_cols=280 Identities=10% Similarity=0.116 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHhcccCccccccccccccCCceeeeeeccceeEEEEecC--CchH--HHHHHHHHHHhCCEEEEe--CC
Q 005131 362 KISSLANSVRVLANMEDPIGHILKKTQLADGLFLEKTSCPLGVLLIVFES--RPDA--LVQIAALAIRSGNGLLLK--GG 435 (713)
Q Consensus 362 ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~--~P~~--~~~~~~~ALaaGN~vv~K--ps 435 (713)
.++.+.+.++.|.....+...... ..+|.....+..|+--|++..|. .|+. ....+.||-.||+.=|+- |.
T Consensus 87 ai~~A~~nI~~fH~~Q~~~~~~~~---~~~Gv~~gq~~~Pi~rvGlYVPGG~a~ypSsvLM~aiPAkVAGV~~Iv~~tPp 163 (434)
T 1kae_A 87 AMAVAVKNIETFHTAQKLPPVDVE---TQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPP 163 (434)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEE---EETTEEEEEEEEECSEEEEECCCSSSCCTHHHHHHHHHHHHHTCSEEEEEECS
T ss_pred HHHHHHHHHHHHHHHhcCCCceEE---ecCCcEEEEEEeehheEEEEecCCCCCchhHHHHhhccHhhcCCCeEEEECCC
Confidence 445566667766543222111111 12466777889999999999997 4543 347788999999875544 43
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCeEEEec-CCchhHHhh----hcCCCccEEEecCCHHHH--HHHHHh-cCCCeEEe
Q 005131 436 KEAKRSNAILHKIITEVIPENVGERLIGLVT-SREEIPDLL----KLDDVIDLVIPRGSNRLV--SQIKES-TKIPVLGH 507 (713)
Q Consensus 436 ~~~~~~~~~l~~~~~~al~~glP~g~v~vv~-g~~~~~~~l----~~~~~v~~v~fTGs~~~g--~~i~~~-~~~~v~lE 507 (713)
.-.|.+ |+ ..+.+ | +=.+.. |+...-.+| .+=|.||+|+=-|..=+. |+..+. .+ .|-..
T Consensus 164 ~i~p~i---L~-AA~l~---G----v~eIy~vGGAQAIAAlAyGTetIp~VDkI~GPGN~yVa~AKr~Vs~~~G-~VgID 231 (434)
T 1kae_A 164 PIADEI---LY-AAQLC---G----VQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLD-GAAID 231 (434)
T ss_dssp SCCHHH---HH-HHHHT---T----CCEEEECCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHHHCTT-SCEES
T ss_pred CCCHHH---HH-HHHHc---C----CCEEeecccHHHHHHHHcCCCCCCCccEEECCCcHHHHHHHHHhHhhcC-ccccC
Confidence 222221 21 12333 4 333444 653322233 235899999999986543 333321 22 12111
Q ss_pred -cCccce--EEEcCCCCHHHH-HHHHHHccCCCCCccccCceEEEcCCCchhHHHHHHHHHHhCCCEEEcCCccccccCC
Q 005131 508 -ADGICH--IYVDKSADMDMA-KQIVLDAKVDYPAACNAMETLLIHQDLVPTGFNELIDNLRSEGVTLYGGPRASSLLNI 583 (713)
Q Consensus 508 -lgG~~p--~iV~~dADl~~A-~~~~~~~~~~~GQ~C~a~~rv~V~~~i~d~fi~~l~~~~~~~Ga~l~gg~~~~~~~~v 583 (713)
.-|.+= +|-+++||.+.. .+.+-.+= + |- .| +-++|..+ ++|.+++.++..++=..+
T Consensus 232 m~AGPSEilViAD~tAnp~~vAaDLLsQAE-H-d~--~a-~aiLvT~s--~~la~~V~~ev~~ql~~l------------ 292 (434)
T 1kae_A 232 MPAGPSEVLVIADSGATPDFVASDLLSQAE-H-GP--DS-QVILLTPA--ADMARRVAEAVERQLAEL------------ 292 (434)
T ss_dssp CCCCCCEEEEEECTTSCHHHHHHHHHHHHT-T-CT--TC-EEEEEESC--HHHHHHHHHHHHHHHTTC------------
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHhc-c-CC--CC-cEEEEECC--HHHHHHHHHHHHHHHHhC------------
Confidence 122222 344557999998 55554431 1 11 12 34666655 556666554433211100
Q ss_pred CCCCCccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEcCCHHHHHHHHhccC-eeeEEEcCCCC---------CC
Q 005131 584 PEPNSFHHEYNSMACTIEIVDDVHAAIGHIHQHGSGHTDCIITNDSEAAEIFLRQVD-SAAVFHNASTR---------FC 653 (713)
Q Consensus 584 ~~~~~~~eE~FgPvl~v~~~~~~~eAi~~~N~~~~gL~a~v~t~d~~~a~~~~~~l~-~G~v~iN~~~~---------~~ 653 (713)
+...+. ++-+..- .|+.++|++||++++|..-.= ..-|.++|.. .+..+++ +|.|++..++. .+
T Consensus 293 pr~~ia-~~sl~~~-~ii~v~~l~ea~~~~N~~APE-HLel~~~dp~---~~l~~I~nAGaIFlG~~tpe~~GDY~aG~N 366 (434)
T 1kae_A 293 PRAETA-RQALNAS-RLIVTKDLAQCVEISNQYGPE-HLIIQTRNAR---ELVDSITSAGSVFLGDWSPESAGDYASGTN 366 (434)
T ss_dssp TTHHHH-HHHHTTC-EEEECSSHHHHHHHHHHHCCS-EEEEESTTHH---HHGGGCCSCSEEEESTTCCHHHHHHTSSSC
T ss_pred ChHHHH-HHHHHcC-eEEEECCHHHHHHHHHHhhhH-hhhhhhcCHH---HHHhhcCcccchhcCCCCchhhcccccCCC
Confidence 100111 1222334 688899999999999997533 5789999964 5667664 99999997643 23
Q ss_pred CCCCccCccceeeccccCCCcccchHhhceeEEEEEE
Q 005131 654 DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILK 690 (713)
Q Consensus 654 ~~~pfGG~k~SG~g~~~~~~~g~~~l~~~~~~k~v~~ 690 (713)
.-+|-+ |..| ..|.-+.+.|+..-++..
T Consensus 367 HvLPT~-----G~AR----~~sgLsV~~F~K~~s~~~ 394 (434)
T 1kae_A 367 HVLPTY-----GYTA----TCSSLGLADFQKRMTVQE 394 (434)
T ss_dssp CCCCCT-----TGGG----TCCCSCGGGGEEEEEEEE
T ss_pred cccCCC-----Ccee----ccCCCcHHhccceeeEEE
Confidence 446665 4556 667788899988776654
No 98
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=46.03 E-value=28 Score=28.92 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=42.0
Q ss_pred cccCceEEEcCCCch-----hHHHHHHHHHHhCCCEE-E-cCCccccccCCCCCCCccccccCceEEEEEeCCHHHHHHH
Q 005131 540 CNAMETLLIHQDLVP-----TGFNELIDNLRSEGVTL-Y-GGPRASSLLNIPEPNSFHHEYNSMACTIEIVDDVHAAIGH 612 (713)
Q Consensus 540 C~a~~rv~V~~~i~d-----~fi~~l~~~~~~~Ga~l-~-gg~~~~~~~~v~~~~~~~eE~FgPvl~v~~~~~~~eAi~~ 612 (713)
|+..-+++++-.+.| ++.+.....+.+.|+++ . |+... +...+. .|-+.|+.|+|.+.|.++
T Consensus 2 ~M~~~Y~I~~~~v~d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~~----------~~eG~~-~~~~viieFpS~~aa~~~ 70 (99)
T 2fiu_A 2 HMAKGYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSVT----------ELEGTA-RARNVVIEFPSVQHAIDC 70 (99)
T ss_dssp -CCCEEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEESCCEE----------EEESCC-CSEEEEEEESSHHHHHHH
T ss_pred CCCcEEEEEEEEeCCHHHHHHHHHHHHHHHHHcCcEEEEECCCce----------EEecCC-cCeEEEEECCCHHHHHHH
Confidence 344456666555544 45555555666778887 3 44221 111111 348889999999999999
Q ss_pred HHccCCC
Q 005131 613 IHQHGSG 619 (713)
Q Consensus 613 ~N~~~~g 619 (713)
.|+.+|-
T Consensus 71 ~~s~~Yq 77 (99)
T 2fiu_A 71 YNSPEYQ 77 (99)
T ss_dssp HHSHHHH
T ss_pred HcCHHHH
Confidence 9976653
No 99
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=43.90 E-value=17 Score=35.53 Aligned_cols=44 Identities=16% Similarity=0.440 Sum_probs=36.3
Q ss_pred hccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005131 9 KDVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSG 58 (713)
Q Consensus 9 ~~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~gg 58 (713)
++.|.+++=+.|+++.++. .+....+.|+.++++|.++++++|.
T Consensus 4 ~~~kli~~DlDGTLl~~~~------~~~~~~~ai~~l~~~Gi~v~laTgr 47 (266)
T 3pdw_A 4 KTYKGYLIDLDGTMYNGTE------KIEEACEFVRTLKDRGVPYLFVTNN 47 (266)
T ss_dssp CCCSEEEEECSSSTTCHHH------HHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred ccCCEEEEeCcCceEeCCE------eCccHHHHHHHHHHCCCeEEEEeCC
Confidence 3468899999999997633 4667888999999999999999874
No 100
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=43.02 E-value=25 Score=35.42 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=36.4
Q ss_pred hhhhhhcc--ceEEEEeCccceec-CCCcccHHHHHHHHHHHHHHHHCCCeEEEEecCh
Q 005131 4 SRAFVKDV--KRIVVKVGTAVVTR-SDGRLALGRLGALCEQIKELNSQGYEVILVSSGA 59 (713)
Q Consensus 4 ~~~~~~~~--~~iViKlGGs~l~~-~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg 59 (713)
.|..|.|| +.++.=+-|+++.+ .. .+.. ...+.|+.+++.|.+++|++|=.
T Consensus 18 ~~~~~~~M~ikli~~DlDGTLl~~~~~-~is~----~~~~al~~l~~~Gi~v~iaTGR~ 71 (301)
T 2b30_A 18 VEEALKGADIKLLLIDFDGTLFVDKDI-KVPS----ENIDAIKEAIEKGYMVSICTGRS 71 (301)
T ss_dssp HHHHTTTCCCCEEEEETBTTTBCCTTT-CSCH----HHHHHHHHHHHHTCEEEEECSSC
T ss_pred hhhccccccccEEEEECCCCCcCCCCC-ccCH----HHHHHHHHHHHCCCEEEEEcCCC
Confidence 45556544 77888999999987 43 4543 45667777888899988885543
No 101
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=42.17 E-value=18 Score=35.44 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=35.4
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecCh
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGA 59 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg 59 (713)
+.|.+++=+.|+++.+.. .+....+.|+.+++.|.++++++|..
T Consensus 7 ~~kli~~DlDGTLl~~~~------~~~~~~~ai~~l~~~Gi~v~l~Tgr~ 50 (268)
T 3qgm_A 7 DKKGYIIDIDGVIGKSVT------PIPEGVEGVKKLKELGKKIIFVSNNS 50 (268)
T ss_dssp CCSEEEEECBTTTEETTE------ECHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCEEEEcCcCcEECCCE------eCcCHHHHHHHHHHcCCeEEEEeCcC
Confidence 368899999999997654 23467788899999999999998853
No 102
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=36.85 E-value=25 Score=31.40 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=32.5
Q ss_pred cceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEec
Q 005131 11 VKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSS 57 (713)
Q Consensus 11 ~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~g 57 (713)
|+.+++=+.|+++.+....+.. ......+.|+.+++.|++++|++|
T Consensus 3 ~k~i~~DlDGTL~~~~~~~i~~-~~~~~~~al~~l~~~G~~iii~Tg 48 (142)
T 2obb_A 3 AMTIAVDFDGTIVEHRYPRIGE-EIPFAVETLKLLQQEKHRLILWSV 48 (142)
T ss_dssp CCEEEECCBTTTBCSCTTSCCC-BCTTHHHHHHHHHHTTCEEEECCS
T ss_pred CeEEEEECcCCCCCCCCccccc-cCHHHHHHHHHHHHCCCEEEEEeC
Confidence 6789999999999864211100 012567888888899999888855
No 103
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=36.67 E-value=35 Score=33.25 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=33.6
Q ss_pred hhccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005131 8 VKDVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSG 58 (713)
Q Consensus 8 ~~~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~gg 58 (713)
|+|+|.++.=+.|+++.+.. .+. ....+.|+.+.+.|.++++++|=
T Consensus 2 M~M~kli~fDlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~~~iaTGR 47 (274)
T 3fzq_A 2 MKLYKLLILDIDGTLRDEVY-GIP----ESAKHAIRLCQKNHCSVVICTGR 47 (274)
T ss_dssp --CCCEEEECSBTTTBBTTT-BCC----HHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcceEEEEECCCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEeCC
Confidence 45678899999999998765 344 35666777778899998888554
No 104
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=35.89 E-value=23 Score=32.49 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=39.0
Q ss_pred hhhhhhccceEEEEeCccceecCC-----C----cccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHHh
Q 005131 4 SRAFVKDVKRIVVKVGTAVVTRSD-----G----RLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRLR 68 (713)
Q Consensus 4 ~~~~~~~~~~iViKlGGs~l~~~~-----~----~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~~ 68 (713)
|++.+++.+.++.=+.|+++.+.. + .+.. ...+.|+.+++.|++++|++|.....-...++
T Consensus 1 ~~~~~~~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~ 70 (180)
T 1k1e_A 1 MQQKLENIKFVITDVDGVLTDGQLHYDANGEAIKSFHV----RDGLGIKMLMDADIQVAVLSGRDSPILRRRIA 70 (180)
T ss_dssp ---CGGGCCEEEEECTTTTSCSEEEEETTEEEEEEEEH----HHHHHHHHHHHTTCEEEEEESCCCHHHHHHHH
T ss_pred CcchhhCCeEEEEeCCCCcCCCCeeeccCcceeeeecc----chHHHHHHHHHCCCeEEEEeCCCcHHHHHHHH
Confidence 355667789999999999987531 1 1221 23456777888999999998775444333333
No 105
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=34.90 E-value=38 Score=33.52 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=33.6
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecCh
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGA 59 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg 59 (713)
|+|.++.=+-|+++.+.. .++. +..+.|+.+++.|.++++++|=.
T Consensus 4 m~kli~~DlDGTLl~~~~-~i~~----~~~~aL~~l~~~Gi~vviaTGR~ 48 (282)
T 1rkq_A 4 AIKLIAIDMDGTLLLPDH-TISP----AVKNAIAAARARGVNVVLTTGRP 48 (282)
T ss_dssp CCCEEEECCCCCCSCTTS-CCCH----HHHHHHHHHHHTTCEEEEECSSC
T ss_pred cceEEEEeCCCCCCCCCC-cCCH----HHHHHHHHHHHCCCEEEEEcCCC
Confidence 457888899999998653 4543 45667788889999988886543
No 106
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=32.66 E-value=43 Score=32.53 Aligned_cols=45 Identities=9% Similarity=0.346 Sum_probs=32.8
Q ss_pred hccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEec
Q 005131 9 KDVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSS 57 (713)
Q Consensus 9 ~~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~g 57 (713)
+|+|.++.=+-|+++.+....+. ....+.|+.+.+.|.++++.+|
T Consensus 10 ~miKli~~DlDGTLl~~~~~~i~----~~~~~al~~l~~~G~~~~iaTG 54 (268)
T 3r4c_A 10 HMIKVLLLDVDGTLLSFETHKVS----QSSIDALKKVHDSGIKIVIATG 54 (268)
T ss_dssp SCCCEEEECSBTTTBCTTTCSCC----HHHHHHHHHHHHTTCEEEEECS
T ss_pred CceEEEEEeCCCCCcCCCCCcCC----HHHHHHHHHHHHCCCEEEEEcC
Confidence 35678899999999973332344 3566777888899999888744
No 107
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}
Probab=31.50 E-value=30 Score=33.38 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=37.6
Q ss_pred CcchhhhhhccceEEEEeCccceecC--CCcccHHHHHHHHHHHHHHHHCCCeEEEEec
Q 005131 1 MDSSRAFVKDVKRIVVKVGTAVVTRS--DGRLALGRLGALCEQIKELNSQGYEVILVSS 57 (713)
Q Consensus 1 ~~~~~~~~~~~~~iViKlGGs~l~~~--~~~~~~~~~~~~~~~i~~~~~~g~~vviV~g 57 (713)
|+.+...|++++.++.=+.|+++.+. ..... ......++.+.+.|.+++++++
T Consensus 2 ~~~~~~~m~~~k~i~fDlDGTLl~s~~~~~~~~----~~~~~a~~~l~~~G~~~~~~t~ 56 (271)
T 2x4d_A 2 MAPWGKRLAGVRGVLLDISGVLYDSGAGGGTAI----AGSVEAVARLKRSRLKVRFCTN 56 (271)
T ss_dssp CSCHHHHTTTCCEEEECCBTTTEECCTTTCEEC----TTHHHHHHHHHHSSSEEEEECC
T ss_pred cccHHHHHhcCCEEEEeCCCeEEecCCCCCccC----cCHHHHHHHHHHCCCcEEEEEC
Confidence 66777777778899999999999863 21111 2334447778889999988864
No 108
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=31.07 E-value=39 Score=32.41 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=33.9
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecCh
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGA 59 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg 59 (713)
|.+.++.=+.|+++.+.. .++. ...+.|+.+++.|.++++++|-.
T Consensus 4 m~kli~~DlDGTLl~~~~-~i~~----~~~~~l~~l~~~g~~~~i~TGr~ 48 (227)
T 1l6r_A 4 MIRLAAIDVDGNLTDRDR-LIST----KAIESIRSAEKKGLTVSLLSGNV 48 (227)
T ss_dssp CCCEEEEEHHHHSBCTTS-CBCH----HHHHHHHHHHHTTCEEEEECSSC
T ss_pred ceEEEEEECCCCCcCCCC-cCCH----HHHHHHHHHHHCCCEEEEECCCC
Confidence 467899999999998643 4543 45667788888999998886654
No 109
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=28.03 E-value=71 Score=30.33 Aligned_cols=45 Identities=18% Similarity=0.334 Sum_probs=33.3
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecCh
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGA 59 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg 59 (713)
|+|.++.=+.|+++.+.. .+. ....+.|+.+++.|.++++++|-.
T Consensus 2 m~kli~~DlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~v~i~TGR~ 46 (231)
T 1wr8_A 2 KIKAISIDIDGTITYPNR-MIH----EKALEAIRRAESLGIPIMLVTGNT 46 (231)
T ss_dssp CCCEEEEESTTTTBCTTS-CBC----HHHHHHHHHHHHTTCCEEEECSSC
T ss_pred ceeEEEEECCCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEcCCC
Confidence 467899999999998654 344 345666777788999998885543
No 110
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=26.92 E-value=1.5e+02 Score=27.26 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=43.5
Q ss_pred HHHHHhhhcCCccceeeecccccCchhHHHHHHHHHHHHHhCCceeEEcCCCceecCCCcccCCCCcccchhHHHHHHHh
Q 005131 103 LYDTLFSELDLTSAQLLVTDNDFRDKEFRSQLSETVKSLLSLRVIPVFNENDAVSTRKAPYEDSSGIFWDNDSLAALLAL 182 (713)
Q Consensus 103 l~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~vpV~~g~d~v~~~~~~~~~~~g~~~~sD~~A~~lA~ 182 (713)
.+...|.+.|+......+..+| ...+.+.++.+++...+.|++| +.+ .+.-|.+...++.
T Consensus 27 ~l~~~L~~~G~~v~~~~iv~Dd------~~~I~~~l~~a~~~~DlVittG-----G~g---------~~~~D~T~ea~a~ 86 (172)
T 3kbq_A 27 FIGNFLTYHGYQVRRGFVVMDD------LDEIGWAFRVALEVSDLVVSSG-----GLG---------PTFDDMTVEGFAK 86 (172)
T ss_dssp HHHHHHHHTTCEEEEEEEECSC------HHHHHHHHHHHHHHCSEEEEES-----CCS---------SSTTCCHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEEEeCCC------HHHHHHHHHHHHhcCCEEEEcC-----CCc---------CCcccchHHHHHH
Confidence 4566788999987755443333 1234466777777778888876 111 1234999999999
Q ss_pred hhCCCE
Q 005131 183 ELKADL 188 (713)
Q Consensus 183 ~l~Ad~ 188 (713)
.++.+.
T Consensus 87 ~~~~~l 92 (172)
T 3kbq_A 87 CIGQDL 92 (172)
T ss_dssp HHTCCC
T ss_pred HcCCCe
Confidence 999764
No 111
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=26.74 E-value=36 Score=30.22 Aligned_cols=63 Identities=19% Similarity=0.095 Sum_probs=39.3
Q ss_pred hhhhhccceEEEEeCccceecCC-----CcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhchHHH
Q 005131 5 RAFVKDVKRIVVKVGTAVVTRSD-----GRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGRQRL 67 (713)
Q Consensus 5 ~~~~~~~~~iViKlGGs~l~~~~-----~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~~~~ 67 (713)
++.+++++.++.=+.|+.+.+.. ............+.|+.+++.|++++|++++....-+..+
T Consensus 3 ~~~~~~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l 70 (162)
T 2p9j_A 3 RDRVKKLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAPLITRL 70 (162)
T ss_dssp HHHHHHCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCHHHHHHH
T ss_pred cccccceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcHHHHHHH
Confidence 55667889999999999996431 0000000012346677777889999999877544333333
No 112
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=26.70 E-value=30 Score=33.83 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=34.7
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSG 58 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~gg 58 (713)
+.|.+++=+.|+++.+.. .+....+.|+.++++|.+++++++.
T Consensus 4 ~~kli~~DlDGTLl~~~~------~i~~~~eal~~l~~~G~~vvl~Tn~ 46 (264)
T 3epr_A 4 AYKGYLIDLDGTIYKGKS------RIPAGERFIERLQEKGIPYMLVTNN 46 (264)
T ss_dssp CCCEEEECCBTTTEETTE------ECHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCEEEEeCCCceEeCCE------ECcCHHHHHHHHHHCCCeEEEEeCC
Confidence 468899999999998754 2456778888888999999999864
No 113
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=26.09 E-value=78 Score=26.56 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=33.7
Q ss_pred cceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhhhch
Q 005131 11 VKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGAVGLGR 64 (713)
Q Consensus 11 ~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg~~i~~ 64 (713)
++.++.-+.|+...+ ...+..+.+.|+.+++.|++++|++++....-+
T Consensus 2 ~k~i~~D~DgtL~~~------~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~ 49 (137)
T 2pr7_A 2 MRGLIVDYAGVLDGT------DEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGA 49 (137)
T ss_dssp CCEEEECSTTTTSSC------HHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGG
T ss_pred CcEEEEeccceecCC------CccCccHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 467888888877322 234556777888888999999999877544333
No 114
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*
Probab=24.42 E-value=70 Score=31.00 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=33.3
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecCh
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSGA 59 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~ggg 59 (713)
+.|.++.=+-|+++.+.. .++ .+..+.|+.+++.|.+++|++|-.
T Consensus 3 ~~kli~~DlDGTLl~~~~-~i~----~~~~~~l~~l~~~g~~~~iaTGR~ 47 (246)
T 3f9r_A 3 KRVLLLFDVDGTLTPPRL-CQT----DEMRALIKRARGAGFCVGTVGGSD 47 (246)
T ss_dssp CSEEEEECSBTTTBSTTS-CCC----HHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CceEEEEeCcCCcCCCCC-ccC----HHHHHHHHHHHHCCCEEEEECCCC
Confidence 356788889999997654 455 356677888889999988885543
No 115
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=24.19 E-value=77 Score=30.86 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=33.3
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSG 58 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~gg 58 (713)
++|.++.=+-|+++.+.. .+. ....+.|+.+.+.|.++++++|=
T Consensus 4 ~~kli~fDlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~~~iaTGR 47 (279)
T 4dw8_A 4 KYKLIVLDLDGTLTNSKK-EIS----SRNRETLIRIQEQGIRLVLASGR 47 (279)
T ss_dssp CCCEEEECCCCCCSCTTS-CCC----HHHHHHHHHHHHTTCEEEEECSS
T ss_pred cceEEEEeCCCCCCCCCC-ccC----HHHHHHHHHHHHCCCEEEEEcCC
Confidence 367899999999998654 344 35667777888899998888554
No 116
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=24.13 E-value=66 Score=31.58 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=32.5
Q ss_pred hccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005131 9 KDVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSG 58 (713)
Q Consensus 9 ~~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~gg 58 (713)
|++|.++.=+-|+++.+.. .+. ....+.|+.+.+.|.++++++|=
T Consensus 4 M~~kli~fDlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~~~iaTGR 48 (290)
T 3dnp_A 4 MSKQLLALNIDGALLRSNG-KIH----QATKDAIEYVKKKGIYVTLVTNR 48 (290)
T ss_dssp --CCEEEECCCCCCSCTTS-CCC----HHHHHHHHHHHHTTCEEEEBCSS
T ss_pred CcceEEEEcCCCCCCCCCC-ccC----HHHHHHHHHHHHCCCEEEEECCC
Confidence 4568899999999998654 344 35666777778899998887543
No 117
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=22.93 E-value=1.6e+02 Score=21.81 Aligned_cols=36 Identities=3% Similarity=0.073 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHH
Q 005131 298 AARESSRRLQAMSSEDRKKILLDIADALEANEELII 333 (713)
Q Consensus 298 ~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~ 333 (713)
.++.....|..++.++|..+.......-.++..++.
T Consensus 29 i~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~ 64 (67)
T 3fgh_A 29 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMK 64 (67)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667789999999999998877666666665553
No 118
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A
Probab=21.62 E-value=78 Score=30.87 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=32.0
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSG 58 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~gg 58 (713)
|+|.++.=+-|+++.+.. .+... .+.+.|+.+++.|.+++|++|=
T Consensus 2 ~~kli~~DlDGTLl~~~~-~i~~~---~~~~al~~l~~~G~~~~iaTGR 46 (271)
T 1rlm_A 2 AVKVIVTDMDGTFLNDAK-TYNQP---RFMAQYQELKKRGIKFVVASGN 46 (271)
T ss_dssp CCCEEEECCCCCCSCTTS-CCCHH---HHHHHHHHHHHHTCEEEEECSS
T ss_pred CccEEEEeCCCCCCCCCC-cCCHH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 467888999999998654 34432 1456677777889998888544
No 119
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=21.57 E-value=1e+02 Score=30.20 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=32.8
Q ss_pred hccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005131 9 KDVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSG 58 (713)
Q Consensus 9 ~~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~gg 58 (713)
++.|.++.=+-|+++.+.. .+. ....+.|+.++++|.+++|++|=
T Consensus 19 ~~~kli~~DlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~v~iaTGR 63 (285)
T 3pgv_A 19 GMYQVVASDLDGTLLSPDH-FLT----PYAKETLKLLTARGINFVFATGR 63 (285)
T ss_dssp --CCEEEEECCCCCSCTTS-CCC----HHHHHHHHHHHTTTCEEEEECSS
T ss_pred CcceEEEEeCcCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEcCC
Confidence 4567899999999998654 344 35666777888899998888543
No 120
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=21.05 E-value=95 Score=30.85 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=32.2
Q ss_pred ccceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005131 10 DVKRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSG 58 (713)
Q Consensus 10 ~~~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~gg 58 (713)
|+|.++.=+-|+++.+.. .+... ...+.|+.+.+.|.++++++|=
T Consensus 36 ~iKli~fDlDGTLld~~~-~i~~~---~~~~al~~l~~~G~~~~iaTGR 80 (304)
T 3l7y_A 36 SVKVIATDMDGTFLNSKG-SYDHN---RFQRILKQLQERDIRFVVASSN 80 (304)
T ss_dssp CCSEEEECCCCCCSCTTS-CCCHH---HHHHHHHHHHHTTCEEEEECSS
T ss_pred eeEEEEEeCCCCCCCCCC-ccCHH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 467889999999998754 23321 1556777788899998888443
No 121
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=20.24 E-value=1.1e+02 Score=29.58 Aligned_cols=43 Identities=12% Similarity=0.340 Sum_probs=31.4
Q ss_pred ceEEEEeCccceecCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005131 12 KRIVVKVGTAVVTRSDGRLALGRLGALCEQIKELNSQGYEVILVSSG 58 (713)
Q Consensus 12 ~~iViKlGGs~l~~~~~~~~~~~~~~~~~~i~~~~~~g~~vviV~gg 58 (713)
|.++.=+-|+++.+....+. +...+.|+.+++.|.++++++|-
T Consensus 3 kli~~DlDGTLl~~~~~~i~----~~~~~al~~l~~~G~~~~iaTGR 45 (261)
T 2rbk_A 3 KALFFDIDGTLVSFETHRIP----SSTIEALEAAHAKGLKIFIATGR 45 (261)
T ss_dssp CEEEECSBTTTBCTTTSSCC----HHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEEeCCCCCcCCCCCcCC----HHHHHHHHHHHHCCCEEEEECCC
Confidence 77888899999987552144 34566677788899998887443
No 122
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=20.01 E-value=1.1e+02 Score=27.83 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=14.2
Q ss_pred HHHHHHHcCCcEEEEeCC
Q 005131 242 AAVNAAYAGIPVVITSGY 259 (713)
Q Consensus 242 aa~~a~~~gv~v~I~~g~ 259 (713)
+...+.+.|+++.|++++
T Consensus 44 ~L~~Lk~~Gi~~~I~Tg~ 61 (168)
T 3ewi_A 44 GISLLKKSGIEVRLISER 61 (168)
T ss_dssp HHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHCCCEEEEEeCc
Confidence 555666789998899887
Done!