BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005132
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 13/113 (11%)
Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSP 556
G +++ +++A DL+AAD G SDP+ ++ G+ + +T ++K LNP+W++ FP
Sbjct: 13 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP----- 67
Query: 557 LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 609
++D + +L + E PP+ + IPL +R G+ + + +
Sbjct: 68 ----IKDIHDVLEVTVFD----EDGDKPPDFLGKVAIPLLSIRDGQPNCYVLK 112
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELDEIGGGEC 426
+ V V++ DL+ D SGK DP+ L+ G +T T + + N WN+ F +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 74
Query: 427 LMVKCYNEE 435
L V ++E+
Sbjct: 75 LEVTVFDED 83
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%)
Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLT 558
I + +V A+ L A D G+SDPYV VQ G KKRTK I+ LNP W + F S
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 559 LHVR 562
+ VR
Sbjct: 79 IKVR 82
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 362 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELDE 420
S+ KI++TVV + L KDK+G DPYV +Q GK +RT+T + + N VW + F +
Sbjct: 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFEC 72
Query: 421 IGGGECLMVKCYNEE 435
+ + V+ +E+
Sbjct: 73 HNSSDRIKVRVLDED 87
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 47/238 (19%)
Query: 370 VTVVEGKDLMPKDKSGKCDPYVKLQY----GKIVQRTRTAHSPNHVWNQKFE----LDEI 421
V +++ DL KD +G DPYVK+ K Q + N ++N+ F+ L E+
Sbjct: 24 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83
Query: 422 GGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSV----RDIWVPL-----EKVNTGEL 472
+ L Y+ + F ++ +V L+ L+E + R +W + EK + GEL
Sbjct: 84 AQRK-LHFSVYDFDRFSRHDL-IGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGEL 141
Query: 473 RLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY----GD 528
+ G + + I++A +L A DL G SDPYVK
Sbjct: 142 NFSLCYLPT--------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR 187
Query: 529 LKKRTKVIFK-TLNPQWHQTLEFPDDGSP-------LTLHVRDHNALLASSSIGDCVV 578
LKKR I K TLNP +++ L F D +P L++ V D++ + + IG C V
Sbjct: 188 LKKRKTSIKKNTLNPTYNEALVF--DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQ-YGDLKKR--TKVIFKTLNPQWHQTLEF 550
G+ + + I++A DL A D G SDPYVK+ D KK+ TKV KTLNP +++T +F
Sbjct: 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 76
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 47/238 (19%)
Query: 370 VTVVEGKDLMPKDKSGKCDPYVKLQY----GKIVQRTRTAHSPNHVWNQKFE----LDEI 421
V +++ DL KD +G DPYVK+ K Q + N ++N+ F+ L E+
Sbjct: 25 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 84
Query: 422 GGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSV----RDIWVPL-----EKVNTGEL 472
+ L Y+ + F ++ +V L+ L+E + R +W + EK + GEL
Sbjct: 85 AQRK-LHFSVYDFDRFSRHDL-IGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGEL 142
Query: 473 RLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY----GD 528
+ G + + I++A +L A DL G SDPYVK
Sbjct: 143 NFSLCYLPT--------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR 188
Query: 529 LKKRTKVIFK-TLNPQWHQTLEFPDDGSP-------LTLHVRDHNALLASSSIGDCVV 578
LKKR I K TLNP +++ L F D +P L++ V D++ + + IG C V
Sbjct: 189 LKKRKTSIKKNTLNPTYNEALVF--DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQ-YGDLKKR--TKVIFKTLNPQWHQTLEF 550
G+ + + I++A DL A D G SDPYVK+ D KK+ TKV KTLNP +++T +F
Sbjct: 19 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 77
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPDDGSP--- 556
I++A++L A D GTSDP+VK+ KK TKV K LNP W++T F +G P
Sbjct: 32 IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF--EGFPYEK 89
Query: 557 -----LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKW 592
L L V D++ + IG+ + ++ QM W
Sbjct: 90 VVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFW 130
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 36/148 (24%)
Query: 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY-- 526
TGE++LQI N GN I I++AR+LV D G SDP+VKV
Sbjct: 6 TGEIQLQI--------------NYDLGNLIIH--ILQARNLVPRDNNGYSDPFVKVYLLP 49
Query: 527 ------------GDLKKRTKVIFKTLNPQWHQTLEFPDDG------SPLTLHVRDHNALL 568
+ K+RTK + K+LNP+W+QT+ + L + V D++
Sbjct: 50 GRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS 109
Query: 569 ASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
++ +G+ +++ +W PL+
Sbjct: 110 SNDFLGEVLIDLSSTSHLDNTPRWYPLK 137
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF--- 550
+ + + +A++L+ D G SDPYVK++ + K++TK I TLNPQW+++ F
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 551 -PDDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
D L++ + D N + S S G V E ++P A W L +GE +
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFG--VSELMKMP----ASGWYKLLNQEEGEYY 131
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQKF 416
T K++VTV + K+L+P D +G DPYVKL+ + Q+T+T S N WN+ F
Sbjct: 14 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESF 72
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF--- 550
+ + + +A++L+ D G SDPYVK++ + K++TK I TLNPQW+++ F
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 551 -PDDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
D L++ + D N + S S G V E ++P A W L +GE +
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFG--VSELMKMP----ASGWYKLLNQEEGEYY 132
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQKF 416
T K++VTV + K+L+P D +G DPYVKL+ + Q+T+T S N WN+ F
Sbjct: 15 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESF 73
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 503 IVEARDLVAADLRGTSDPYVKV-QYGDLKKR--TKVIFKTLNPQWHQTLEFPDD-----G 554
I++A +L A D+ GTSDPYVKV D KK+ TKV KTLNP +++ F G
Sbjct: 25 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAG 84
Query: 555 SPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 602
L + V D + IG+ V + + ++W LQ K E
Sbjct: 85 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEE 132
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 28/230 (12%)
Query: 370 VTVVEGKDLMPKDKSGKCDPYVKL----QYGKIVQRTRTAHSPNHVWNQKFEL----DEI 421
V +++ +L D G DPYVK+ K + + N V+N++F E+
Sbjct: 23 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 82
Query: 422 GGGECLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATR 480
G + L++ Y+ + F ++ G +V + + G V + W L+ + E +
Sbjct: 83 AG-KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE------KEEQEK 135
Query: 481 VDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKV 535
+ D S +G + +VI+EA++L D+ G SDPYVK+ KK+T +
Sbjct: 136 LGDICFSLRYVPTAGK--LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 193
Query: 536 IFKTLNPQWHQTLEF--PDD---GSPLTLHVRDHNALLASSSIGDCVVEY 580
TLNP ++++ F P + + + V D++ + + +IG V Y
Sbjct: 194 KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 243
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ 394
T K+ V ++E K+L D G DPYVK+
Sbjct: 148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIH 178
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 20/116 (17%)
Query: 501 LVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF----P 551
+V+ +A++LV D G SDPYVK++ + K++TK I +LNP+W++T F
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES 235
Query: 552 DDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 602
D L++ + D N + S S G + E Q+ D W L +GE
Sbjct: 236 DKDRRLSVEIWDWDLTSRNDFMGSLSFG--ISELQK----AGVDGWFKLLSQEEGE 285
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 370 VTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQ--KFELDEI 421
V V + K+L+P D +G DPYVKL+ + Q+T+T S N WN+ +F+L E
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES 235
Query: 422 GGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 471
L V+ ++ ++ ++ MGS + L + V D W L GE
Sbjct: 236 DKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEGE 285
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 552
N + + I++A +L A D+ GTSDPYVKV KK+ TKV KTLNP +++ F
Sbjct: 16 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 75
Query: 553 D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK 600
G L + V D + IG+ V + + ++W LQ K
Sbjct: 76 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK 128
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF--- 550
+ + + +A++L+ D G SDPYVK++ + K++TK I TLNPQW+++ F
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 551 -PDDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
D L++ + D N S S G V E + P A W L +GE +
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXGSLSFG--VSELXKXP----ASGWYKLLNQEEGEYY 133
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQKF 416
K++VTV + K+L+P D +G DPYVKL+ + Q+T+T S N WN+ F
Sbjct: 19 KLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESF 74
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 20/116 (17%)
Query: 501 LVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF----P 551
+V+ +A++LV D G SDPYVK++ + K++TK I +LNP+W++T F
Sbjct: 35 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES 94
Query: 552 DDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 602
D L++ + D N + S S G + E Q+ D W L +GE
Sbjct: 95 DKDRRLSVEIWDWDLTSRNDFMGSLSFG--ISELQK----AGVDGWFKLLSQEEGE 144
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 370 VTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAH-SPNHVWNQ--KFELDEI 421
V V + K+L+P D +G DPYVKL+ + Q+T+T S N WN+ +F+L E
Sbjct: 35 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES 94
Query: 422 GGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 471
L V+ ++ ++ ++ MGS + L + V D W L GE
Sbjct: 95 DKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEGE 144
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 552
N + + I++A +L A D+ GTSDPYVKV KK+ TKV KTLNP +++ F
Sbjct: 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100
Query: 553 D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
G L + V D + IG+ V + + ++W LQ
Sbjct: 101 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 552
N + + I++A +L A D+ GTSDPYVKV KK+ TKV KTLNP +++ F
Sbjct: 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 553 D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
G L + V D + IG+ V + + ++W LQ
Sbjct: 93 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 552
N + + I++A +L A D+ GTSDPYVKV KK+ TKV KTLNP +++ F
Sbjct: 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 553 D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
G L + V D + IG+ V + + ++W LQ
Sbjct: 93 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 35/149 (23%)
Query: 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY--- 526
G L+L+I A D+ I + + EAR+L+ D G SDPYVK++
Sbjct: 8 GRLQLEIRAPTADE---------------IHVTVGEARNLIPMDPNGLSDPYVKLKLIPD 52
Query: 527 --GDLKKRTKVIFKTLNPQWHQTLEF---PDD-GSPLTLHVRD-----HNALLASSSIGD 575
K++T+ + TLNP W++T F P D L++ V D N + + S G
Sbjct: 53 PRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTSRNDFMGAMSFG- 111
Query: 576 CVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
V E + P D W L +GE +
Sbjct: 112 -VSELLKAP----VDGWYKLLNQEEGEYY 135
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQKF 416
T +I+VTV E ++L+P D +G DPYVKL+ Q+TRT + N VWN+ F
Sbjct: 18 TADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETF 76
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF 550
N ++ I+ A+ L D G +DPYVK+ K RTK + T NP W++TL++
Sbjct: 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
Query: 551 ----PDDGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 598
+D TL + D + + IG+ ++L NQ + I L+ V
Sbjct: 88 HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 141
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 368 INVTVVEGKDLMPKDKSGKCDPYVKL-------QYGKIVQRTRT-AHSPNHVWNQKFEL- 418
+ T++ K L P D +G DPYVKL + K+ RT+T ++ N VWN+ +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL--RTKTLRNTRNPVWNETLQYH 88
Query: 419 ---DEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKV 467
+E + L + +E+ FG +E +G R +L+ L ++ + LE+V
Sbjct: 89 GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 141
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF 550
N ++ I+ A+ L D G +DPYVK+ K RTK + T NP W++TL++
Sbjct: 26 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 85
Query: 551 ----PDDGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 598
+D TL + D + + IG+ ++L NQ + I L+ V
Sbjct: 86 HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 139
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 368 INVTVVEGKDLMPKDKSGKCDPYVKL-------QYGKIVQRTRT-AHSPNHVWNQKFEL- 418
+ T++ K L P D +G DPYVKL + K+ RT+T ++ N VWN+ +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL--RTKTLRNTRNPVWNETLQYH 86
Query: 419 ---DEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKV 467
+E + L + +E+ FG +E +G R +L+ L ++ + LE+V
Sbjct: 87 GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 139
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 458 RDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGT 517
R WV K E + E + + +R Q SG G + + ++EA +L A G
Sbjct: 350 RTAWVQKIKA-ASEQYIDTEKKQREKAYQARSQKT-SGIGRLMVHVIEATELKACKPNGK 407
Query: 518 SDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF-----PDDGSPLTLHVRDH 564
S+PY ++ G T+ I TLNP+W+ +F D LTL RD
Sbjct: 408 SNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ 459
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQY--GDLKK-----RTKVIFKTLNPQWHQTLEFP 551
+ + +V DL D+ G SDPYVK+ D + +TK I KTLNP+W++ F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 552 DDGS--PLTLHVRDHNALLASSSIGDCVVEYQRLP 584
+ S L V D N L +G V LP
Sbjct: 83 VNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLP 117
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--------KIVQRTRTAHSPNHVWNQKF 416
R + V VV G DL KD G DPYVKL +VQ + N WN++F
Sbjct: 20 SRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEF 79
Query: 417 ELDEIGGGECLMVKCYNE-EIFGDENMGSARVNLEGL 452
L+ + ++E + D+ +G V L L
Sbjct: 80 YFRVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 15/114 (13%)
Query: 503 IVEARDLVAADLRG-TSDPYVKVQYGDLKK---RTKVIFKTLNPQWHQTLEFPDDGSPLT 558
I EAR L A D + TSDPY+K+ KK +T+V+ KTL+P + +T F G P T
Sbjct: 28 IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY--GIPYT 85
Query: 559 LHVRDHNALLASSSIGDCVVEYQRLPPNQ-MADKWIPLQGVRKGEIHVLITRKV 611
+ ++ ++ + R + + + IPL G+ E +L+ R++
Sbjct: 86 --------QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI 131
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 481 VDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTK 534
++D E SR + + ++ L D+ G SDPYV+V D +TK
Sbjct: 13 LEDEENSR---------IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTK 63
Query: 535 VIFKTLNPQWHQTLEF---PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP 584
I K+LNP+W++ + F P L V D N L +G V LP
Sbjct: 64 TIKKSLNPKWNEEILFRVHPQQHR-LLFEVFDENRLTRDDFLGQVDVPLYPLP 115
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKR-----TKVIFKTLNPQWHQTLEF--PDDG- 554
I++AR+L A D+ GTSDPYVKV KR T + LNP ++++ F P +
Sbjct: 22 IIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKL 81
Query: 555 --SPLTLHVRDHNALLASSSIGDCVVEYQRLP 584
+ + + V D + L + IG + ++ P
Sbjct: 82 RETTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 494 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD 553
SG+ + VIVE+ + G DP V V + D KK+TK + LNP W++ LEF
Sbjct: 3 SGSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLR 62
Query: 554 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQM 588
G PL SSS+G V +++ + N++
Sbjct: 63 GIPLDF----------SSSLGIIVKDFETIGQNKL 87
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 372 VVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFELD------EIGGG 424
+VE +PK K GK DP V + + ++T+ + N VWN+ E D +
Sbjct: 12 IVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSS 71
Query: 425 ECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDI 460
++VK + E I ++ +G+A V L+ L R +
Sbjct: 72 LGIIVKDF-ETIGQNKLIGTATVALKDLTGDQSRSL 106
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQWHQTLEF-- 550
+ + ++ L D+ G SDPYV+V D +TK I K+LNP+W++ + F
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 551 -PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP 584
P + V D N L +G V LP
Sbjct: 70 LPQRHR-ILFEVFDENRLTRDDFLGQVDVPLYPLP 103
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 497 GWIELVIVEAR-DLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD--- 552
G LV+ R + + D +D Y+KV +G + RT V++ NP+W ++F +
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLL 451
Query: 553 -DGSPLTLHVRDHNALLASSSIGDC 576
G PL + V D + +G C
Sbjct: 452 STGGPLRVQVWDADYGWDDDLLGSC 476
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 501 LVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTL 548
+ I+ A+DL + + +PYVK+ + K+RTK + KTL P+W+QT
Sbjct: 25 VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 77
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 501 LVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEFPDDGS 555
+ I+ A+DL + + +PYVK+ + K+RTK + KTL P+W+QT + S
Sbjct: 22 VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY----S 77
Query: 556 PLTLHVRDHNALLASSSIGD 575
P +H R+ + ++ D
Sbjct: 78 P--VHRREFRERMLEITLWD 95
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 513 DLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWHQTLEF---PDDGSPLTLHVRDHNA 566
D+ T DPYV++ D +KRT+ +NP W++T EF P+ + L + + D N
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 567 LL 568
++
Sbjct: 82 VM 83
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 22/116 (18%)
Query: 497 GWIELVIVEARDLVAA-DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEF 550
G +E+ ++ AR L + T PYVKV + KK+T++ KTL+P + Q+L F
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 551 PDDGSPLTLHV--------RDHNA-------LLASSSIGDCVVEYQRL-PPNQMAD 590
+ L V DH LL + V+ + +L PP+ + D
Sbjct: 90 DESPQGKVLQVIVWGDYGRXDHKCFXGVAQILLEELDLSSXVIGWYKLFPPSSLVD 145
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 513 DLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWHQTLEF---PDDGSPLTLHVRDHNA 566
D+ T DPYV++ D +KRT+ +NP W++T EF P+ + L + + D N
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 567 LL 568
++
Sbjct: 97 VM 98
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR 532
+ +V+++AR L +D+ G SDPYVKV KKR
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKR 65
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVK--LQYGKIVQRTRTAH----SPNHVWNQKFE 417
T + V V++ + L D SG DPYVK L + K + H +PN V+N+ F
Sbjct: 28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 87
Query: 418 LD 419
D
Sbjct: 88 FD 89
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 513 DLRGTSDPYVKV---QYGDLKKRTKVIFKTLNPQWHQTLEF---PDDGSPLTLHVRDHNA 566
D+ T DPYV++ D +KRT+ +NP W++T EF P+ + L + + D N
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 567 LL 568
++
Sbjct: 97 VM 98
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 503 IVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEFPDDGSPL 557
I+ L A D G SDP+VK+ K +T++ KTLNP++++ + S L
Sbjct: 43 IIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL 102
Query: 558 T-----LHVRDHNALLASSSIGDC 576
+ V D++ ++ IG C
Sbjct: 103 AKKSLDISVWDYDIGKSNDYIGGC 126
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 503 IVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEFPDDGSPL 557
I+ L A D G SDP+VK+ K +T++ KTLNP++++ + S L
Sbjct: 43 IIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL 102
Query: 558 T-----LHVRDHNALLASSSIGDC 576
+ V D++ ++ IG C
Sbjct: 103 AKKSLDISVWDYDIGKSNDYIGGC 126
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 503 IVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEFPDDGSPL 557
I+ L A D G SDP+VK+ K +T++ KTLNP++++ + S L
Sbjct: 21 IIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL 80
Query: 558 T-----LHVRDHNALLASSSIGDC 576
+ V D++ ++ IG C
Sbjct: 81 AKKSLDISVWDYDIGKSNDYIGGC 104
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF- 550
G + +VI+EA++L D+ G SDPYVK+ KK+T + TLNP ++++ F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 551 ----PDDGSPLTLHVRDHNALLASSSIGDCVVEY 580
+ + V D++ + + +IG V Y
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 118
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ 394
T K+ V ++E K+L D G DPYVK+
Sbjct: 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIH 53
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF- 550
G + +VI+EA++L D+ G SDPYVK+ KK+T + TLNP ++++ F
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 551 -PDD---GSPLTLHVRDHNALLASSSIGDCVVEY 580
P + + + V D++ + + +IG V Y
Sbjct: 77 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 110
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ 394
T K+ V ++E K+L D G DPYVK+
Sbjct: 15 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIH 45
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF- 550
G + +VI+EA++L D+ G SDPYVK+ KK+T + TLNP ++++ F
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 551 -PDD---GSPLTLHVRDHNALLASSSIGDCVVEY 580
P + + + V D++ + + +IG V Y
Sbjct: 78 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 111
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ 394
T K+ V ++E K+L D G DPYVK+
Sbjct: 16 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIH 46
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKT-LNPQWHQTLEF--PD 552
+G +E+V+V A+ L AD DPYV++ +++ V P+W++T F +
Sbjct: 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE 68
Query: 553 DGSPLTLHVRDHNALLASSSIGDCVVEYQ------RLPP---NQMADKWIPLQGVRKGEI 603
+ L + D + ++G+ + + +PP N + D+ KGEI
Sbjct: 69 GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE------EYKGEI 122
Query: 604 HVLITRK 610
V ++ K
Sbjct: 123 WVALSFK 129
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHV--WNQKFELDEIGGGE 425
+ V +V K L D DPYV+L Q++ A WN+ F G
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 426 CLMVKCYNEEI-FGDENMGSARVNLEG-LVEGSV 457
L K +++++ D+ +G A + LE VEGS+
Sbjct: 72 ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI 105
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 501 LVIVEA-RDLVAADLRGTSDPYVKVQYGDLKKR-----TKVIFKTLNPQWHQTLEF 550
+V+V A R+L+A G SDPYV++ K+R T V KTLNP + Q+ +F
Sbjct: 27 IVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEF 550
NG + ++++ +DLV D +PYVK + K++TK+ KT NP +++ L +
Sbjct: 19 NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY 77
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 361 ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH 406
I R + + ++EGK L+ K + G CDPYVK+ I + +R H
Sbjct: 22 IDAQDRVLLLHIIEGKGLISK-QPGTCDPYVKISL--IPEDSRLRH 64
>pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AHC|B Chain B, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AIL|C Chain C, Crystal Structure Of An Evolved Replicating Dna Polymerase
Length = 775
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 231 TDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEV--------KMKY 282
T R GS+P+ + +M E G + F+LY I + T V K K
Sbjct: 231 TIGRDGSEPKMQRIGDMTAVEVKGRIHFDLYHVITRTINLPTYTLEAVYEAIFGKPKEKV 290
Query: 283 VADDSTTFWAIGPDSGIIAKHA 304
AD+ W G + +AK++
Sbjct: 291 YADEIAKAWESGENLERVAKYS 312
>pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase
Length = 775
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 231 TDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEV--------KMKY 282
T R GS+P+ + +M E G + F+LY I + T V K K
Sbjct: 231 TIGRDGSEPKMQRIGDMTAVEVKGRIHFDLYHVIRTTINLPTYTLEAVYEAIFGKPKEKV 290
Query: 283 VADDSTTFWAIGPDSGIIAKHA 304
AD+ W G + +AK++
Sbjct: 291 YADEIAKAWESGENLERVAKYS 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,006,785
Number of Sequences: 62578
Number of extensions: 743369
Number of successful extensions: 1516
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1416
Number of HSP's gapped (non-prelim): 88
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)