Query 005132
Match_columns 713
No_of_seqs 490 out of 3295
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 18:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 2E-66 4.2E-71 585.6 49.1 547 4-613 246-842 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 1.2E-27 2.7E-32 260.9 24.0 217 366-596 167-419 (421)
3 KOG1028 Ca2+-dependent phospho 99.9 6.4E-27 1.4E-31 255.4 12.0 214 468-699 152-393 (421)
4 COG5038 Ca2+-dependent lipid-b 99.9 7.5E-23 1.6E-27 233.2 32.3 464 101-609 614-1160(1227)
5 KOG2059 Ras GTPase-activating 99.9 4.7E-23 1E-27 223.2 15.3 231 367-610 6-276 (800)
6 cd04016 C2_Tollip C2 domain pr 99.9 1.6E-21 3.4E-26 176.5 15.0 113 496-609 1-121 (121)
7 cd08677 C2A_Synaptotagmin-13 C 99.9 4.8E-21 1.1E-25 170.5 13.5 109 470-595 1-118 (118)
8 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.5E-20 3.2E-25 172.4 14.1 114 469-596 1-125 (125)
9 cd04029 C2A_SLP-4_5 C2 domain 99.8 3.1E-20 6.7E-25 170.2 15.3 114 469-596 1-125 (125)
10 cd08682 C2_Rab11-FIP_classI C2 99.8 1.9E-20 4E-25 172.3 13.5 110 499-608 1-126 (126)
11 cd08381 C2B_PI3K_class_II C2 d 99.8 2.6E-20 5.7E-25 169.9 14.1 111 469-596 1-122 (122)
12 cd08375 C2_Intersectin C2 doma 99.8 1.2E-19 2.5E-24 168.7 15.0 120 490-609 8-135 (136)
13 cd08392 C2A_SLP-3 C2 domain fi 99.8 1.5E-19 3.3E-24 166.0 14.8 114 469-596 1-128 (128)
14 cd04028 C2B_RIM1alpha C2 domai 99.8 1.7E-19 3.6E-24 168.2 14.4 119 464-598 12-139 (146)
15 cd04042 C2A_MCTP_PRT C2 domain 99.8 2.9E-19 6.3E-24 163.1 15.4 112 498-609 1-119 (121)
16 cd08387 C2A_Synaptotagmin-8 C2 99.8 2.9E-19 6.3E-24 163.8 15.1 114 469-596 2-123 (124)
17 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.9E-19 4.1E-24 164.0 13.4 108 498-605 1-125 (126)
18 cd04016 C2_Tollip C2 domain pr 99.8 2.1E-19 4.6E-24 162.6 13.7 112 366-478 2-121 (121)
19 cd08376 C2B_MCTP_PRT C2 domain 99.8 3.8E-19 8.2E-24 161.1 15.2 111 498-609 1-114 (116)
20 cd04022 C2A_MCTP_PRT_plant C2 99.8 3E-19 6.6E-24 164.4 14.1 112 498-609 1-125 (127)
21 cd04036 C2_cPLA2 C2 domain pre 99.8 5.5E-19 1.2E-23 160.8 14.0 110 499-609 2-117 (119)
22 cd08388 C2A_Synaptotagmin-4-11 99.8 1.1E-18 2.4E-23 160.5 16.1 114 469-596 2-127 (128)
23 cd08385 C2A_Synaptotagmin-1-5- 99.8 1.1E-18 2.4E-23 160.0 15.3 114 469-596 2-123 (124)
24 cd08681 C2_fungal_Inn1p-like C 99.8 4.4E-19 9.5E-24 161.2 12.1 112 497-609 1-118 (118)
25 cd08407 C2B_Synaptotagmin-13 C 99.8 1E-18 2.2E-23 161.9 14.3 114 469-596 1-138 (138)
26 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.3E-18 2.9E-23 158.4 14.6 111 499-609 2-121 (121)
27 cd08389 C2A_Synaptotagmin-14_1 99.8 1.2E-18 2.7E-23 159.4 14.4 113 469-596 2-123 (124)
28 cd08386 C2A_Synaptotagmin-7 C2 99.8 1.6E-18 3.5E-23 159.2 15.2 114 469-596 2-124 (125)
29 cd08680 C2_Kibra C2 domain fou 99.8 9E-19 2E-23 159.5 13.0 111 471-595 2-124 (124)
30 cd04017 C2D_Ferlin C2 domain f 99.8 1.6E-18 3.5E-23 161.2 14.7 115 497-612 1-133 (135)
31 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.3E-18 2.9E-23 158.7 13.8 112 497-609 1-121 (121)
32 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.3E-18 2.8E-23 164.2 14.0 112 498-609 1-131 (150)
33 cd04030 C2C_KIAA1228 C2 domain 99.8 2.2E-18 4.8E-23 158.7 15.2 114 469-596 2-127 (127)
34 cd04031 C2A_RIM1alpha C2 domai 99.8 1.6E-18 3.4E-23 159.2 14.0 113 469-596 2-125 (125)
35 cd08406 C2B_Synaptotagmin-12 C 99.8 1.5E-18 3.3E-23 160.8 13.6 98 470-581 2-109 (136)
36 cd04024 C2A_Synaptotagmin-like 99.8 1.6E-18 3.4E-23 159.9 13.4 113 497-609 1-128 (128)
37 cd08521 C2A_SLP C2 domain firs 99.8 2.4E-18 5.3E-23 157.5 14.3 112 470-595 1-123 (123)
38 cd08685 C2_RGS-like C2 domain 99.8 1.6E-18 3.4E-23 157.3 12.4 109 470-595 1-119 (119)
39 cd08395 C2C_Munc13 C2 domain t 99.8 1.8E-18 3.9E-23 156.2 12.4 99 498-597 1-112 (120)
40 cd08678 C2_C21orf25-like C2 do 99.8 5.6E-18 1.2E-22 155.8 14.8 109 499-609 1-119 (126)
41 KOG1030 Predicted Ca2+-depende 99.8 1.2E-18 2.7E-23 160.7 10.0 92 495-586 4-97 (168)
42 cd08390 C2A_Synaptotagmin-15-1 99.8 1.3E-17 2.8E-22 152.7 15.6 113 470-596 1-122 (123)
43 KOG2059 Ras GTPase-activating 99.8 5.9E-18 1.3E-22 184.0 15.4 238 173-480 5-277 (800)
44 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 7.8E-18 1.7E-22 154.1 14.0 110 498-607 1-122 (123)
45 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 6.5E-18 1.4E-22 161.7 13.9 127 469-597 1-138 (162)
46 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.4E-17 3.1E-22 152.9 15.4 109 497-609 4-122 (126)
47 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 8E-18 1.7E-22 156.3 13.7 112 498-609 1-132 (133)
48 cd08378 C2B_MCTP_PRT_plant C2 99.8 8.5E-18 1.8E-22 153.1 13.0 106 499-609 2-119 (121)
49 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.6E-17 3.4E-22 151.1 14.7 111 497-609 1-118 (119)
50 cd08682 C2_Rab11-FIP_classI C2 99.8 6.1E-18 1.3E-22 155.5 12.1 110 368-477 1-126 (126)
51 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.3E-17 2.9E-22 151.9 14.0 101 367-467 1-112 (126)
52 cd04010 C2B_RasA3 C2 domain se 99.7 8.4E-18 1.8E-22 157.8 11.9 98 498-597 1-122 (148)
53 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2E-17 4.4E-22 150.8 14.0 110 499-608 2-120 (121)
54 cd04015 C2_plant_PLD C2 domain 99.7 3E-17 6.6E-22 156.4 15.8 113 496-609 6-157 (158)
55 cd08402 C2B_Synaptotagmin-1 C2 99.7 2.3E-17 4.9E-22 153.8 14.5 101 469-583 1-111 (136)
56 cd08681 C2_fungal_Inn1p-like C 99.7 1.7E-17 3.8E-22 150.6 12.2 113 366-478 1-118 (118)
57 cd04042 C2A_MCTP_PRT C2 domain 99.7 3.6E-17 7.7E-22 149.3 14.3 114 367-480 1-121 (121)
58 cd08376 C2B_MCTP_PRT C2 domain 99.7 4.6E-17 9.9E-22 147.4 14.9 112 367-479 1-115 (116)
59 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.9E-17 6.3E-22 149.8 13.4 113 366-478 1-121 (121)
60 cd08408 C2B_Synaptotagmin-14_1 99.7 3.9E-17 8.4E-22 152.1 14.3 100 470-583 2-112 (138)
61 cd08692 C2B_Tac2-N C2 domain s 99.7 3.5E-17 7.5E-22 149.4 13.6 112 470-595 1-135 (135)
62 cd08410 C2B_Synaptotagmin-17 C 99.7 3.5E-17 7.6E-22 152.2 13.9 99 470-582 1-109 (135)
63 cd04014 C2_PKC_epsilon C2 doma 99.7 5.9E-17 1.3E-21 150.2 15.3 112 496-609 3-128 (132)
64 cd08375 C2_Intersectin C2 doma 99.7 8.3E-17 1.8E-21 149.5 14.9 114 365-478 14-135 (136)
65 cd04044 C2A_Tricalbin-like C2 99.7 6.2E-17 1.3E-21 148.3 13.8 115 497-612 2-124 (124)
66 cd08405 C2B_Synaptotagmin-7 C2 99.7 5.9E-17 1.3E-21 151.0 13.9 101 469-583 1-111 (136)
67 cd04050 C2B_Synaptotagmin-like 99.7 3.4E-17 7.3E-22 145.5 11.3 98 498-598 1-103 (105)
68 cd04018 C2C_Ferlin C2 domain t 99.7 3.3E-17 7.2E-22 154.0 11.9 105 498-602 1-130 (151)
69 cd08404 C2B_Synaptotagmin-4 C2 99.7 2.2E-17 4.7E-22 153.9 10.5 112 469-596 1-122 (136)
70 cd08688 C2_KIAA0528-like C2 do 99.7 3E-17 6.6E-22 147.1 11.0 99 499-597 1-109 (110)
71 cd08403 C2B_Synaptotagmin-3-5- 99.7 9.2E-17 2E-21 149.3 13.9 98 470-581 1-108 (134)
72 cd04026 C2_PKC_alpha_gamma C2 99.7 7.6E-17 1.6E-21 149.3 13.2 118 469-603 1-127 (131)
73 cd08373 C2A_Ferlin C2 domain f 99.7 1.3E-16 2.8E-21 146.9 14.6 109 503-614 2-119 (127)
74 cd04036 C2_cPLA2 C2 domain pre 99.7 9.9E-17 2.2E-21 145.9 13.6 111 368-478 2-117 (119)
75 cd08409 C2B_Synaptotagmin-15 C 99.7 3.3E-17 7.2E-22 152.6 10.6 100 470-584 2-111 (137)
76 cd04024 C2A_Synaptotagmin-like 99.7 9E-17 1.9E-21 148.1 13.2 113 366-478 1-128 (128)
77 cd04022 C2A_MCTP_PRT_plant C2 99.7 9E-17 2E-21 147.9 13.0 113 367-479 1-126 (127)
78 KOG1030 Predicted Ca2+-depende 99.7 3.1E-17 6.7E-22 151.5 9.6 90 173-285 6-96 (168)
79 cd04046 C2_Calpain C2 domain p 99.7 2E-16 4.4E-21 145.3 15.1 111 496-609 2-121 (126)
80 cd04019 C2C_MCTP_PRT_plant C2 99.7 1.2E-16 2.5E-21 150.9 13.7 113 367-479 1-132 (150)
81 cd08384 C2B_Rabphilin_Doc2 C2 99.7 1.4E-16 3.1E-21 147.8 13.8 110 471-596 1-120 (133)
82 cd08382 C2_Smurf-like C2 domai 99.7 1.2E-16 2.5E-21 146.2 12.9 110 498-607 1-122 (123)
83 cd04043 C2_Munc13_fungal C2 do 99.7 2.2E-16 4.8E-21 145.1 14.4 110 498-609 2-120 (126)
84 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.6E-16 3.5E-21 144.7 13.0 110 368-477 2-120 (121)
85 cd04011 C2B_Ferlin C2 domain s 99.7 1.8E-16 4E-21 142.3 12.9 99 495-597 2-110 (111)
86 cd04009 C2B_Munc13-like C2 dom 99.7 1E-16 2.2E-21 148.7 11.6 102 469-584 2-117 (133)
87 cd04039 C2_PSD C2 domain prese 99.7 1E-16 2.3E-21 142.7 11.1 90 497-586 1-98 (108)
88 cd04027 C2B_Munc13 C2 domain s 99.7 2.7E-16 5.8E-21 144.7 13.8 108 498-607 2-127 (127)
89 cd08381 C2B_PI3K_class_II C2 d 99.7 2.8E-16 6.1E-21 143.3 13.6 98 366-464 13-121 (122)
90 cd04041 C2A_fungal C2 domain f 99.7 8.1E-17 1.8E-21 144.5 9.8 97 497-596 1-107 (111)
91 cd08690 C2_Freud-1 C2 domain f 99.7 4.4E-16 9.4E-21 146.4 14.8 117 500-616 5-143 (155)
92 cd08394 C2A_Munc13 C2 domain f 99.7 3.5E-16 7.6E-21 140.8 13.0 104 497-605 2-112 (127)
93 KOG0696 Serine/threonine prote 99.7 1.8E-17 3.8E-22 170.9 4.9 117 469-602 168-293 (683)
94 cd04039 C2_PSD C2 domain prese 99.7 2.6E-16 5.6E-21 140.1 11.8 96 173-287 1-99 (108)
95 cd04015 C2_plant_PLD C2 domain 99.7 4.4E-16 9.6E-21 148.4 14.0 114 366-479 7-158 (158)
96 cd00276 C2B_Synaptotagmin C2 d 99.7 1.9E-16 4.2E-21 147.1 11.0 115 470-600 1-125 (134)
97 cd08678 C2_C21orf25-like C2 do 99.7 4.6E-16 1E-20 143.0 13.1 111 368-480 1-121 (126)
98 cd04035 C2A_Rabphilin_Doc2 C2 99.7 1E-15 2.2E-20 140.1 14.9 111 470-595 2-123 (123)
99 cd08393 C2A_SLP-1_2 C2 domain 99.7 5.2E-16 1.1E-20 142.3 12.7 100 366-465 15-125 (125)
100 cd04050 C2B_Synaptotagmin-like 99.7 5.4E-16 1.2E-20 137.7 12.2 98 368-467 2-103 (105)
101 cd08378 C2B_MCTP_PRT_plant C2 99.7 5.4E-16 1.2E-20 141.2 12.1 108 367-478 1-119 (121)
102 cd04028 C2B_RIM1alpha C2 domai 99.7 1.2E-15 2.7E-20 142.3 14.7 102 366-467 29-139 (146)
103 cd08400 C2_Ras_p21A1 C2 domain 99.7 1.2E-15 2.7E-20 140.0 14.5 112 366-480 4-124 (126)
104 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.1E-15 2.3E-20 140.1 13.5 100 366-465 15-125 (125)
105 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.3E-15 2.8E-20 139.6 13.6 100 366-465 16-123 (124)
106 KOG1326 Membrane-associated pr 99.7 2.4E-16 5.2E-21 177.2 10.3 358 173-581 206-702 (1105)
107 cd04051 C2_SRC2_like C2 domain 99.7 5.5E-16 1.2E-20 142.3 10.6 108 498-605 1-125 (125)
108 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 1.7E-15 3.7E-20 138.2 13.5 110 368-477 2-120 (121)
109 cd04014 C2_PKC_epsilon C2 doma 99.6 2E-15 4.3E-20 140.0 14.2 111 366-479 4-129 (132)
110 cd08395 C2C_Munc13 C2 domain t 99.6 1E-15 2.2E-20 138.3 11.8 100 367-467 1-113 (120)
111 cd08377 C2C_MCTP_PRT C2 domain 99.6 2.8E-15 6E-20 136.3 14.5 111 366-478 1-118 (119)
112 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 1.4E-15 2.9E-20 141.3 12.7 112 367-478 1-132 (133)
113 cd08677 C2A_Synaptotagmin-13 C 99.6 1.6E-15 3.5E-20 135.2 12.2 96 366-464 14-118 (118)
114 cd04045 C2C_Tricalbin-like C2 99.6 2.2E-15 4.8E-20 137.0 13.2 107 497-604 1-110 (120)
115 cd04049 C2_putative_Elicitor-r 99.6 2.3E-15 4.9E-20 138.0 13.3 102 497-598 1-109 (124)
116 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 1.9E-15 4.2E-20 138.3 12.8 110 367-476 1-122 (123)
117 cd08675 C2B_RasGAP C2 domain s 99.6 1.2E-15 2.6E-20 142.0 11.5 99 499-598 1-121 (137)
118 cd08676 C2A_Munc13-like C2 dom 99.6 1.1E-15 2.5E-20 143.8 11.4 100 491-595 22-153 (153)
119 cd08685 C2_RGS-like C2 domain 99.6 2.2E-15 4.8E-20 136.7 12.6 98 366-464 12-119 (119)
120 cd08385 C2A_Synaptotagmin-1-5- 99.6 4.2E-15 9.1E-20 136.2 14.4 100 366-465 16-123 (124)
121 cd08392 C2A_SLP-3 C2 domain fi 99.6 3.6E-15 7.8E-20 137.0 13.6 100 366-465 15-128 (128)
122 cd04032 C2_Perforin C2 domain 99.6 2.5E-15 5.4E-20 137.2 11.9 92 492-584 23-118 (127)
123 cd04038 C2_ArfGAP C2 domain pr 99.6 3.3E-15 7.1E-20 139.9 13.0 93 173-289 2-95 (145)
124 cd04044 C2A_Tricalbin-like C2 99.6 2.9E-15 6.3E-20 137.2 12.4 115 366-480 2-124 (124)
125 cd04017 C2D_Ferlin C2 domain f 99.6 5.5E-15 1.2E-19 137.5 14.3 115 367-481 2-134 (135)
126 cd04052 C2B_Tricalbin-like C2 99.6 2.4E-15 5.3E-20 134.9 11.4 95 514-609 9-108 (111)
127 cd04041 C2A_fungal C2 domain f 99.6 1.8E-15 3.9E-20 135.8 10.6 91 173-286 1-100 (111)
128 cd04031 C2A_RIM1alpha C2 domai 99.6 5.2E-15 1.1E-19 135.8 13.9 99 366-465 16-125 (125)
129 cd04040 C2D_Tricalbin-like C2 99.6 3.6E-15 7.9E-20 134.7 12.5 106 499-604 1-113 (115)
130 cd04038 C2_ArfGAP C2 domain pr 99.6 3E-15 6.5E-20 140.1 11.8 88 497-585 2-91 (145)
131 cd04010 C2B_RasA3 C2 domain se 99.6 2.8E-15 6E-20 140.8 11.4 99 367-467 1-123 (148)
132 cd04046 C2_Calpain C2 domain p 99.6 1E-14 2.2E-19 134.0 14.8 112 366-479 3-122 (126)
133 cd08691 C2_NEDL1-like C2 domai 99.6 9.9E-15 2.2E-19 135.2 14.2 109 498-607 2-136 (137)
134 cd08394 C2A_Munc13 C2 domain f 99.6 6.1E-15 1.3E-19 132.7 11.9 98 366-466 2-101 (127)
135 cd04037 C2E_Ferlin C2 domain f 99.6 5.1E-15 1.1E-19 135.6 11.6 111 498-609 1-118 (124)
136 cd04030 C2C_KIAA1228 C2 domain 99.6 1.1E-14 2.5E-19 133.9 13.9 100 366-465 16-127 (127)
137 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.2E-14 2.6E-19 139.2 14.1 103 364-466 25-138 (162)
138 cd08388 C2A_Synaptotagmin-4-11 99.6 1.9E-14 4.1E-19 132.4 14.9 100 366-465 16-127 (128)
139 cd04021 C2_E3_ubiquitin_ligase 99.6 1.2E-14 2.7E-19 133.2 13.2 110 497-607 2-124 (125)
140 cd08389 C2A_Synaptotagmin-14_1 99.6 1.3E-14 2.9E-19 132.7 13.1 99 366-465 16-123 (124)
141 cd04027 C2B_Munc13 C2 domain s 99.6 1.2E-14 2.7E-19 133.6 12.8 108 367-476 2-127 (127)
142 cd04013 C2_SynGAP_like C2 doma 99.6 2.5E-14 5.4E-19 133.1 14.8 109 496-609 10-138 (146)
143 cd08373 C2A_Ferlin C2 domain f 99.6 1.8E-14 4E-19 132.6 13.8 110 372-483 2-120 (127)
144 cd08680 C2_Kibra C2 domain fou 99.6 8.7E-15 1.9E-19 133.3 11.3 99 366-464 14-124 (124)
145 cd04043 C2_Munc13_fungal C2 do 99.6 2.3E-14 5E-19 131.7 14.3 111 367-479 2-121 (126)
146 cd08386 C2A_Synaptotagmin-7 C2 99.6 2E-14 4.2E-19 132.0 13.7 100 366-465 16-124 (125)
147 cd08382 C2_Smurf-like C2 domai 99.6 1.2E-14 2.5E-19 133.0 12.0 108 368-476 2-122 (123)
148 cd08688 C2_KIAA0528-like C2 do 99.6 9E-15 1.9E-19 131.0 10.8 99 368-466 1-109 (110)
149 cd08383 C2A_RasGAP C2 domain ( 99.6 3.5E-14 7.6E-19 128.6 14.3 105 499-609 2-117 (117)
150 cd08521 C2A_SLP C2 domain firs 99.6 3.2E-14 6.9E-19 130.1 13.9 99 366-464 14-123 (123)
151 cd04018 C2C_Ferlin C2 domain t 99.6 1.2E-14 2.6E-19 136.8 11.3 105 367-471 1-130 (151)
152 cd04048 C2A_Copine C2 domain f 99.6 1.4E-14 3E-19 132.0 10.9 95 502-596 5-113 (120)
153 cd04032 C2_Perforin C2 domain 99.6 1.8E-14 3.9E-19 131.5 11.2 92 168-284 24-118 (127)
154 cd08676 C2A_Munc13-like C2 dom 99.6 1.5E-14 3.2E-19 136.3 10.8 103 153-284 2-143 (153)
155 cd08686 C2_ABR C2 domain in th 99.6 5.2E-14 1.1E-18 125.0 13.3 93 499-596 1-108 (118)
156 cd04045 C2C_Tricalbin-like C2 99.6 3E-14 6.4E-19 129.6 12.1 107 366-473 1-110 (120)
157 cd08390 C2A_Synaptotagmin-15-1 99.6 4.6E-14 9.9E-19 129.1 13.4 100 366-465 14-122 (123)
158 PLN03008 Phospholipase D delta 99.5 3.4E-14 7.5E-19 161.2 13.8 97 516-614 75-180 (868)
159 cd04052 C2B_Tricalbin-like C2 99.5 2.7E-14 5.9E-19 128.1 10.6 100 382-481 8-111 (111)
160 cd04049 C2_putative_Elicitor-r 99.5 6.2E-14 1.3E-18 128.5 13.0 102 366-467 1-109 (124)
161 cd04026 C2_PKC_alpha_gamma C2 99.5 5.4E-14 1.2E-18 130.2 12.5 106 366-472 13-127 (131)
162 cd04011 C2B_Ferlin C2 domain s 99.5 4.4E-14 9.6E-19 126.8 11.1 97 366-466 4-110 (111)
163 cd04051 C2_SRC2_like C2 domain 99.5 3.8E-14 8.3E-19 130.1 10.7 108 367-474 1-125 (125)
164 KOG1013 Synaptic vesicle prote 99.5 4.8E-15 1E-19 149.2 4.4 202 366-581 93-327 (362)
165 cd04013 C2_SynGAP_like C2 doma 99.5 1.5E-13 3.2E-18 127.9 13.5 112 366-482 11-142 (146)
166 cd04037 C2E_Ferlin C2 domain f 99.5 8E-14 1.7E-18 127.6 11.4 88 174-284 1-92 (124)
167 cd08690 C2_Freud-1 C2 domain f 99.5 3.1E-13 6.6E-18 127.2 14.5 112 368-479 4-137 (155)
168 cd04040 C2D_Tricalbin-like C2 99.5 2.1E-13 4.5E-18 123.2 12.2 100 368-467 1-104 (115)
169 cd08406 C2B_Synaptotagmin-12 C 99.5 1.3E-13 2.8E-18 127.8 10.4 99 366-466 15-123 (136)
170 cd00275 C2_PLC_like C2 domain 99.5 3.5E-13 7.5E-18 124.1 13.0 109 497-609 2-127 (128)
171 cd08675 C2B_RasGAP C2 domain s 99.5 1.5E-13 3.3E-18 127.9 10.5 100 368-468 1-122 (137)
172 cd08383 C2A_RasGAP C2 domain ( 99.5 3.6E-13 7.8E-18 122.0 12.6 105 368-478 2-117 (117)
173 cd08686 C2_ABR C2 domain in th 99.5 1.9E-13 4.2E-18 121.4 10.4 78 175-281 1-91 (118)
174 cd08691 C2_NEDL1-like C2 domai 99.5 7.8E-13 1.7E-17 122.5 14.5 89 174-286 2-107 (137)
175 cd08407 C2B_Synaptotagmin-13 C 99.5 1.6E-13 3.4E-18 127.2 9.8 97 366-464 15-123 (138)
176 PLN03200 cellulose synthase-in 99.5 1E-13 2.2E-18 171.3 10.8 114 493-609 1976-2099(2102)
177 cd04009 C2B_Munc13-like C2 dom 99.5 5.3E-13 1.1E-17 123.8 13.0 89 366-454 16-118 (133)
178 PLN03008 Phospholipase D delta 99.5 3.2E-13 6.9E-18 153.4 13.4 99 385-483 75-181 (868)
179 cd04047 C2B_Copine C2 domain s 99.5 2.7E-13 5.8E-18 121.5 10.3 86 500-586 3-101 (110)
180 cd08404 C2B_Synaptotagmin-4 C2 99.5 3E-13 6.5E-18 126.0 11.0 99 366-466 15-123 (136)
181 cd08384 C2B_Rabphilin_Doc2 C2 99.5 3.3E-13 7.3E-18 125.2 10.4 88 172-282 12-108 (133)
182 cd04021 C2_E3_ubiquitin_ligase 99.5 9.3E-13 2E-17 120.7 13.1 108 367-476 3-124 (125)
183 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1.3E-12 2.8E-17 119.6 14.0 99 366-464 15-123 (123)
184 cd08405 C2B_Synaptotagmin-7 C2 99.4 3.5E-13 7.7E-18 125.5 10.1 99 366-466 15-123 (136)
185 cd00276 C2B_Synaptotagmin C2 d 99.4 4.1E-13 8.8E-18 124.7 10.1 101 366-468 14-124 (134)
186 cd08408 C2B_Synaptotagmin-14_1 99.4 4.5E-13 9.7E-18 124.8 10.1 90 171-283 13-112 (138)
187 cd08402 C2B_Synaptotagmin-1 C2 99.4 4.7E-13 1E-17 124.7 10.3 100 366-467 15-124 (136)
188 cd08410 C2B_Synaptotagmin-17 C 99.4 8E-13 1.7E-17 122.9 10.9 87 172-281 13-108 (135)
189 KOG0696 Serine/threonine prote 99.4 1.8E-13 3.9E-18 141.6 6.2 104 367-471 181-293 (683)
190 cd08409 C2B_Synaptotagmin-15 C 99.4 6.9E-13 1.5E-17 123.6 9.6 100 366-466 15-124 (137)
191 cd08403 C2B_Synaptotagmin-3-5- 99.4 9.9E-13 2.2E-17 122.2 10.5 99 366-466 14-122 (134)
192 cd04048 C2A_Copine C2 domain f 99.4 1.9E-12 4E-17 117.9 10.6 95 371-465 5-113 (120)
193 cd08692 C2B_Tac2-N C2 domain s 99.4 3.3E-12 7.1E-17 116.8 12.0 98 366-464 14-121 (135)
194 PLN03200 cellulose synthase-in 99.4 1.1E-12 2.3E-17 162.4 11.3 113 365-479 1979-2100(2102)
195 KOG1011 Neurotransmitter relea 99.3 1.7E-12 3.8E-17 139.4 8.0 115 495-611 293-425 (1283)
196 PF00168 C2: C2 domain; Inter 99.3 4.3E-12 9.2E-17 107.3 8.9 79 499-577 1-85 (85)
197 cd00275 C2_PLC_like C2 domain 99.3 1.8E-11 3.8E-16 112.7 13.7 109 367-478 3-127 (128)
198 cd08374 C2F_Ferlin C2 domain s 99.3 6.3E-12 1.4E-16 114.9 10.3 92 498-589 1-127 (133)
199 cd04047 C2B_Copine C2 domain s 99.3 1.6E-11 3.5E-16 109.9 10.5 85 177-285 4-100 (110)
200 KOG1326 Membrane-associated pr 99.3 1.3E-11 2.8E-16 139.6 10.3 249 366-616 613-1027(1105)
201 cd00030 C2 C2 domain. The C2 d 99.2 4E-11 8.6E-16 103.9 10.4 97 499-595 1-102 (102)
202 KOG1011 Neurotransmitter relea 99.2 1.2E-11 2.7E-16 132.9 8.4 113 363-477 292-422 (1283)
203 PF00168 C2: C2 domain; Inter 99.2 3.9E-11 8.5E-16 101.4 9.8 80 175-277 1-85 (85)
204 KOG1013 Synaptic vesicle prote 99.2 1.4E-11 3E-16 124.4 4.3 213 173-448 93-325 (362)
205 smart00239 C2 Protein kinase C 99.2 2E-10 4.4E-15 99.8 10.8 94 498-591 1-100 (101)
206 cd00030 C2 C2 domain. The C2 d 99.1 6.3E-10 1.4E-14 96.2 10.6 97 368-464 1-102 (102)
207 smart00239 C2 Protein kinase C 99.0 1.6E-09 3.5E-14 94.0 10.5 91 368-458 2-98 (101)
208 PLN02223 phosphoinositide phos 99.0 2.3E-09 5E-14 117.9 13.5 111 496-609 408-536 (537)
209 KOG1328 Synaptic vesicle prote 99.0 1.4E-10 3E-15 126.9 3.0 102 469-584 933-1048(1103)
210 PLN02270 phospholipase D alpha 99.0 3.8E-09 8.3E-14 120.7 13.2 119 365-483 7-152 (808)
211 PLN02270 phospholipase D alpha 99.0 5.3E-09 1.1E-13 119.6 13.6 116 496-613 7-150 (808)
212 PLN02952 phosphoinositide phos 98.9 9.1E-09 2E-13 115.7 13.7 99 496-597 469-581 (599)
213 cd08374 C2F_Ferlin C2 domain s 98.9 1E-08 2.2E-13 93.9 9.9 90 368-457 2-126 (133)
214 KOG1328 Synaptic vesicle prote 98.9 5.2E-10 1.1E-14 122.4 0.6 119 490-609 107-300 (1103)
215 KOG0905 Phosphoinositide 3-kin 98.9 3.2E-09 6.9E-14 121.7 6.8 114 469-598 1512-1636(1639)
216 PLN02230 phosphoinositide phos 98.8 1.8E-08 3.8E-13 113.2 12.5 112 495-609 467-597 (598)
217 KOG1327 Copine [Signal transdu 98.8 2.5E-08 5.4E-13 108.8 12.7 173 398-584 41-235 (529)
218 KOG1031 Predicted Ca2+-depende 98.8 1.1E-08 2.5E-13 109.3 9.6 113 497-609 3-135 (1169)
219 PLN02222 phosphoinositide phos 98.8 4E-08 8.7E-13 110.2 13.4 111 496-609 451-580 (581)
220 PLN02223 phosphoinositide phos 98.8 5.1E-08 1.1E-12 107.5 13.1 110 366-478 409-536 (537)
221 cd08689 C2_fungal_Pkc1p C2 dom 98.7 4.4E-08 9.5E-13 84.3 8.5 88 175-285 1-88 (109)
222 PLN02228 Phosphoinositide phos 98.7 1E-07 2.2E-12 106.7 13.7 111 496-609 430-560 (567)
223 KOG0169 Phosphoinositide-speci 98.7 4.8E-08 1E-12 109.6 10.3 110 497-609 616-743 (746)
224 cd08689 C2_fungal_Pkc1p C2 dom 98.7 8.3E-08 1.8E-12 82.6 8.7 84 368-454 1-88 (109)
225 PLN02952 phosphoinositide phos 98.6 4.6E-07 9.9E-12 102.2 14.3 98 366-466 470-581 (599)
226 PLN02230 phosphoinositide phos 98.6 5.8E-07 1.3E-11 101.2 13.6 110 366-478 469-597 (598)
227 KOG1264 Phospholipase C [Lipid 98.5 2.8E-07 6E-12 102.6 8.9 110 496-609 1064-1188(1267)
228 PLN02222 phosphoinositide phos 98.5 1.2E-06 2.7E-11 98.4 14.0 98 366-466 452-563 (581)
229 KOG1031 Predicted Ca2+-depende 98.5 4.9E-07 1.1E-11 97.1 9.7 113 366-478 3-135 (1169)
230 KOG1327 Copine [Signal transdu 98.5 1.2E-06 2.6E-11 96.0 12.5 180 226-454 41-236 (529)
231 KOG0169 Phosphoinositide-speci 98.4 8E-07 1.7E-11 100.0 10.6 110 367-479 617-744 (746)
232 PLN02228 Phosphoinositide phos 98.4 2.2E-06 4.7E-11 96.2 13.6 111 366-479 431-561 (567)
233 KOG1264 Phospholipase C [Lipid 98.4 1.1E-06 2.4E-11 97.9 10.8 116 366-485 1065-1195(1267)
234 PF10296 DUF2404: Putative int 98.2 5.9E-06 1.3E-10 71.0 8.4 68 2-70 20-88 (91)
235 cd08683 C2_C2cd3 C2 domain fou 98.2 1.6E-06 3.5E-11 76.9 4.8 97 499-595 1-143 (143)
236 PLN02352 phospholipase D epsil 98.2 1.1E-05 2.3E-10 92.9 12.6 114 365-484 9-135 (758)
237 PLN02352 phospholipase D epsil 98.1 1.3E-05 2.9E-10 92.0 11.6 111 495-614 8-133 (758)
238 KOG0905 Phosphoinositide 3-kin 98.1 3.5E-06 7.6E-11 97.6 6.5 103 365-467 1523-1636(1639)
239 PF12416 DUF3668: Cep120 prote 98.0 0.00053 1.1E-08 72.8 20.2 211 368-586 2-296 (340)
240 cd08683 C2_C2cd3 C2 domain fou 97.9 1.7E-05 3.6E-10 70.6 4.8 97 368-464 1-143 (143)
241 KOG2060 Rab3 effector RIM1 and 97.9 1.3E-05 2.9E-10 83.1 4.5 105 493-597 265-379 (405)
242 PLN02964 phosphatidylserine de 97.7 4.3E-05 9.4E-10 87.3 6.5 85 172-286 53-140 (644)
243 cd08684 C2A_Tac2-N C2 domain f 97.2 0.00027 5.9E-09 58.5 3.5 92 369-462 2-101 (103)
244 PLN02964 phosphatidylserine de 97.2 0.00048 1E-08 78.9 6.0 87 494-587 51-141 (644)
245 KOG3837 Uncharacterized conser 97.1 0.00035 7.6E-09 73.3 3.8 118 495-612 365-505 (523)
246 cd08684 C2A_Tac2-N C2 domain f 97.1 0.00048 1E-08 57.1 3.5 91 501-594 3-102 (103)
247 PF12416 DUF3668: Cep120 prote 97.1 0.0054 1.2E-07 65.2 12.3 108 499-609 2-131 (340)
248 KOG2060 Rab3 effector RIM1 and 96.8 0.00081 1.8E-08 70.2 3.1 103 365-467 268-380 (405)
249 KOG3837 Uncharacterized conser 96.7 0.0011 2.3E-08 69.9 3.3 114 366-479 367-503 (523)
250 PF15627 CEP76-C2: CEP76 C2 do 96.3 0.029 6.3E-07 52.6 9.9 119 494-613 6-152 (156)
251 KOG1265 Phospholipase C [Lipid 95.4 0.046 1E-06 63.0 8.3 108 495-613 701-828 (1189)
252 KOG1265 Phospholipase C [Lipid 95.2 0.032 7E-07 64.2 6.1 84 366-456 703-798 (1189)
253 cd08693 C2_PI3K_class_I_beta_d 94.8 0.15 3.3E-06 49.3 8.7 85 497-583 8-120 (173)
254 PF15627 CEP76-C2: CEP76 C2 do 94.7 0.3 6.4E-06 46.0 10.2 115 366-480 9-151 (156)
255 cd08398 C2_PI3K_class_I_alpha 94.7 0.17 3.8E-06 48.0 8.7 83 497-583 8-106 (158)
256 cd08693 C2_PI3K_class_I_beta_d 94.4 0.29 6.2E-06 47.4 9.6 83 367-451 9-119 (173)
257 PF10358 NT-C2: N-terminal C2 94.2 1.1 2.4E-05 41.7 13.2 111 495-609 5-134 (143)
258 PF10358 NT-C2: N-terminal C2 94.1 1.1 2.4E-05 41.6 12.9 114 366-483 7-139 (143)
259 cd08397 C2_PI3K_class_III C2 d 94.0 0.18 4E-06 48.0 7.5 69 515-583 27-107 (159)
260 cd08380 C2_PI3K_like C2 domain 94.0 0.23 5E-06 47.2 8.2 86 497-583 8-107 (156)
261 cd08398 C2_PI3K_class_I_alpha 94.0 0.4 8.8E-06 45.5 9.7 83 367-452 9-106 (158)
262 cd04012 C2A_PI3K_class_II C2 d 94.0 0.2 4.4E-06 48.3 7.8 88 496-583 7-119 (171)
263 cd08380 C2_PI3K_like C2 domain 92.6 0.74 1.6E-05 43.7 9.2 85 367-452 9-107 (156)
264 cd08687 C2_PKN-like C2 domain 92.1 1.2 2.6E-05 37.7 8.4 83 387-478 9-92 (98)
265 cd08687 C2_PKN-like C2 domain 91.7 1.2 2.6E-05 37.6 8.0 82 518-609 9-92 (98)
266 cd08397 C2_PI3K_class_III C2 d 91.1 0.91 2E-05 43.2 7.9 83 385-478 28-122 (159)
267 KOG1452 Predicted Rho GTPase-a 90.9 0.36 7.9E-06 49.5 5.2 115 494-609 48-166 (442)
268 cd08399 C2_PI3K_class_I_gamma 90.4 1.6 3.5E-05 42.3 8.9 68 497-565 10-88 (178)
269 cd08399 C2_PI3K_class_I_gamma 89.9 2 4.3E-05 41.6 9.1 68 367-435 11-88 (178)
270 cd08695 C2_Dock-B C2 domains f 89.8 2.8 6.1E-05 40.9 10.0 56 227-282 54-113 (189)
271 cd04012 C2A_PI3K_class_II C2 d 89.3 1.8 3.9E-05 41.8 8.4 86 367-452 9-119 (171)
272 PF00792 PI3K_C2: Phosphoinosi 89.2 2.7 5.9E-05 39.1 9.3 52 532-583 23-85 (142)
273 cd08694 C2_Dock-A C2 domains f 88.7 3.7 8.1E-05 40.2 10.0 55 227-281 54-114 (196)
274 KOG1452 Predicted Rho GTPase-a 86.5 1.3 2.9E-05 45.6 5.6 111 365-479 50-167 (442)
275 cd08695 C2_Dock-B C2 domains f 85.7 6.3 0.00014 38.5 9.7 51 399-449 54-111 (189)
276 PF11618 DUF3250: Protein of u 85.5 3.5 7.5E-05 36.4 7.1 90 521-612 2-107 (107)
277 smart00142 PI3K_C2 Phosphoinos 84.0 4.3 9.3E-05 35.3 7.1 68 499-566 13-92 (100)
278 cd08694 C2_Dock-A C2 domains f 83.7 8.8 0.00019 37.6 9.7 52 399-450 54-114 (196)
279 PF00792 PI3K_C2: Phosphoinosi 83.6 5.2 0.00011 37.2 8.0 53 400-452 22-85 (142)
280 PF14429 DOCK-C2: C2 domain in 83.4 3 6.6E-05 40.7 6.6 56 227-282 60-120 (184)
281 smart00142 PI3K_C2 Phosphoinos 81.5 8.3 0.00018 33.5 7.9 68 368-435 13-91 (100)
282 PF15625 CC2D2AN-C2: CC2D2A N- 79.2 6.4 0.00014 37.8 7.1 68 386-453 36-107 (168)
283 cd08697 C2_Dock-D C2 domains f 79.1 24 0.00053 34.4 10.9 56 227-282 57-123 (185)
284 PF14429 DOCK-C2: C2 domain in 78.2 7.6 0.00016 37.9 7.4 54 529-582 59-120 (184)
285 PF11618 DUF3250: Protein of u 75.3 18 0.00039 32.0 8.1 89 390-478 2-104 (107)
286 PF15625 CC2D2AN-C2: CC2D2A N- 73.5 53 0.0011 31.5 11.7 66 217-284 38-107 (168)
287 KOG0694 Serine/threonine prote 68.0 7.4 0.00016 44.8 5.0 166 385-566 26-196 (694)
288 PTZ00447 apical membrane antig 67.6 43 0.00093 35.4 9.9 109 364-477 56-171 (508)
289 cd08679 C2_DOCK180_related C2 66.9 14 0.0003 35.9 6.2 54 229-282 55-115 (178)
290 cd08679 C2_DOCK180_related C2 57.8 38 0.00082 32.8 7.4 52 530-582 54-115 (178)
291 cd08696 C2_Dock-C C2 domains f 57.8 37 0.0008 33.0 7.1 54 529-582 54-118 (179)
292 cd08696 C2_Dock-C C2 domains f 57.8 31 0.00067 33.5 6.6 56 227-282 55-118 (179)
293 PF06219 DUF1005: Protein of u 52.0 1.2E+02 0.0027 33.1 10.4 122 517-640 35-197 (460)
294 cd08697 C2_Dock-D C2 domains f 51.5 61 0.0013 31.6 7.5 54 529-582 56-123 (185)
295 KOG3543 Ca2+-dependent activat 51.0 31 0.00067 39.1 5.9 95 367-465 342-440 (1218)
296 PF06219 DUF1005: Protein of u 48.9 3.5E+02 0.0077 29.8 13.1 92 387-478 36-166 (460)
297 KOG3532 Predicted protein kina 42.6 65 0.0014 37.2 6.8 163 15-188 142-344 (1051)
298 KOG1329 Phospholipase D1 [Lipi 41.3 19 0.00041 42.9 2.6 98 385-482 136-243 (887)
299 KOG1329 Phospholipase D1 [Lipi 41.0 17 0.00037 43.2 2.2 81 516-596 136-220 (887)
300 cd00025 BPI1 BPI/LBP/CETP N-te 38.6 3.1E+02 0.0068 27.4 10.8 65 19-95 50-117 (223)
301 KOG0694 Serine/threonine prote 37.0 26 0.00057 40.5 2.8 49 216-265 28-78 (694)
302 PF14909 SPATA6: Spermatogenes 32.8 2.6E+02 0.0056 26.0 8.0 67 516-583 18-99 (140)
303 PTZ00447 apical membrane antig 31.3 4.9E+02 0.011 27.9 10.6 110 493-608 54-171 (508)
304 PF07162 B9-C2: Ciliary basal 31.0 4.6E+02 0.01 24.9 10.1 76 368-449 4-101 (168)
305 PF07162 B9-C2: Ciliary basal 28.8 5.2E+02 0.011 24.6 10.2 74 502-581 7-102 (168)
306 PF14186 Aida_C2: Cytoskeletal 28.4 1.8E+02 0.0039 27.2 6.4 86 367-455 14-115 (147)
307 KOG4269 Rac GTPase-activating 28.0 52 0.0011 39.2 3.3 76 162-265 748-829 (1112)
308 KOG2419 Phosphatidylserine dec 26.1 11 0.00025 42.7 -2.2 149 366-551 280-444 (975)
309 PF14909 SPATA6: Spermatogenes 25.3 2.3E+02 0.0049 26.3 6.3 67 217-285 21-101 (140)
310 PF10409 PTEN_C2: C2 domain of 24.8 4E+02 0.0086 24.0 8.1 87 497-584 4-98 (134)
311 cd05137 RasGAP_CLA2_BUD2 CLA2/ 23.5 94 0.002 34.3 4.2 37 572-609 1-43 (395)
312 KOG2419 Phosphatidylserine dec 23.2 15 0.00032 41.8 -2.0 65 501-566 284-356 (975)
313 KOG4027 Uncharacterized conser 22.1 3.5E+02 0.0076 25.6 6.8 27 555-581 83-109 (187)
314 PF10409 PTEN_C2: C2 domain of 20.1 6.4E+02 0.014 22.6 10.6 87 367-453 5-98 (134)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=2e-66 Score=585.57 Aligned_cols=547 Identities=22% Similarity=0.307 Sum_probs=446.2
Q ss_pred hHHHHHHHhhcCCcccceEEEeeeecCCCCCceeeeeeEeCCCCCEEEEEEeEEeccCCceEE--------------EEE
Q 005132 4 HLLLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISIL--------------LLA 69 (713)
Q Consensus 4 ~~~ve~~l~~~~P~~i~~~~~~~f~lG~~pp~i~~v~~~~~~~~d~~~~d~~~~~~~~~~~~~--------------l~~ 69 (713)
-+.||+.|.++.|+||++++|++||||++||||.+||+|+++++|.+.|||+|+|+++|++++ |.+
T Consensus 246 ~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~~~~r~~vn~kIsL~v 325 (1227)
T COG5038 246 VDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLVV 325 (1227)
T ss_pred HHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhhHHHhhhcCcceeEEE
Confidence 468999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred eecCCccc-eeeEEEEeeEEEeEEEEEEEee-----eeEEEEEeecCCeEEE-eeeecCCCCCccCCccCcChHHHHHHH
Q 005132 70 KLAKPLLG-TAKIVINSLHIKGDLLVMPILE-----GKAVLYSFVSIPDVRI-GVAFGSGGSQSLPATELPGVSNWLARL 142 (713)
Q Consensus 70 ~l~~~~~~-~~~i~v~~~~~~G~~rv~~~l~-----~~~v~~sf~~~P~v~~-~~~~g~~~~~~~~~~~~Pgl~~~~~~~ 142 (713)
++|+.... ++||+|+++.|+|++|++..|+ ++.|.+||||.|+||| ..++|.+ -.+++||+||||++||+++
T Consensus 326 ~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~-~~g~dI~~iPGL~~fI~~~ 404 (1227)
T COG5038 326 KKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPLGGD-FFGVDIFAIPGLSRFIQEI 404 (1227)
T ss_pred EeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecCcceeEEEEEcCCC-ccceeEecCccHHHHHHHH
Confidence 89988776 9999999999999999999999 9999999999999998 7788766 6678899999999999999
Q ss_pred HHHHhhcceecCcceeeccccccc----cccccccEEEEEEEeeCCCCCCC--CCCCCcccccccCCCCccccccCCCCc
Q 005132 143 INETLVKTLVEPRRRCYSLPAVDL----RKKAVGGIVYVRVISASKLSRSS--LRGSPSRRQQNYSADSSLEEHYEDKDL 216 (713)
Q Consensus 143 i~~~l~~~~v~P~~~~~~l~~~~l----~~~~~~GvL~V~v~~A~~L~~~~--~~~~~~~~~~~~~~dp~~~~~~~~k~~ 216 (713)
|+++|++||++|++ ++|+..++ ...|+ |||.|+|.+|++|+..+ ..+. +
T Consensus 405 i~~~l~pml~~Pns--l~idi~~~m~~~s~~aI-GVv~vkI~sa~~lk~~d~~i~~~----------------------v 459 (1227)
T COG5038 405 INSTLGPMLLPPNS--LTIDISQIMAGDSGTAI-GVVEVKIKSAEGLKKSDSTINGT----------------------V 459 (1227)
T ss_pred HHhhcCCeeeCCce--EEEcHHHhhccccCCee-EEEEEEEeeccCcccccccccCC----------------------C
Confidence 99999999999999 66655664 23455 99999999999999877 2232 3
Q ss_pred CcEEEEEeC--cEEEEeecCCCCCCcccceEEEEEecCCceEEEEEEEeCCCCCccceeEEEEEEcccccCCccceeecC
Q 005132 217 TTFVEIELE--ELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIG 294 (713)
Q Consensus 217 dpyv~v~~g--~~~~tt~i~~~~nP~WnEtf~~~v~~~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~ 294 (713)
|||+++.+. ...||++++++.||+||||||+++++.+++|.++|||++. ..+|+.+|++.++|..|.+++..
T Consensus 460 Dpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~-~~sd~vvG~~~l~L~~L~~~~~~----- 533 (1227)
T COG5038 460 DPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS-FKSDKVVGSTQLDLALLHQNPVK----- 533 (1227)
T ss_pred CceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc-cCCcceeeeEEechHHhhhcccc-----
Confidence 889999983 3457888899999999999999999999999999999887 36888999999999999986531
Q ss_pred CCCccccccccccCCeeeeeeccCCcceeeEEEEEEEeeeccCCCCCCCCCCcCCCCcccccCCCcCcCCccEEEEEEEE
Q 005132 295 PDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVE 374 (713)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~L~V~I~~ 374 (713)
.+...++. ...++.|+|.+++.+-+...+... . ..+.+ | .+....|++.+++.+
T Consensus 534 ------------~ne~~e~~--~~~k~vGrL~yDl~ffp~~e~k~~-~--------~~s~e--~-~ed~n~GI~k~tl~~ 587 (1227)
T COG5038 534 ------------KNELYEFL--RNTKNVGRLTYDLRFFPVIEDKKE-L--------KGSVE--P-LEDSNTGILKVTLRE 587 (1227)
T ss_pred ------------ccceeeee--ccCccceEEEEeeeeecccCCccc-c--------ccccC--C-cccCCcceeEEEeec
Confidence 11222221 234467999988754321111111 0 00111 1 122234799999999
Q ss_pred eEcCCCCCCCCCCCcEEEEEEC-CeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCCCCceeEEEEEeccc
Q 005132 375 GKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEG 451 (713)
Q Consensus 375 a~~L~~~~~~g~~dpyv~v~l~-~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~lG~~~i~l~~ 451 (713)
+++|.... ......+++++++ +.++.|++. .+.+|.||+.+...+.+. ...+.+.++|.. ..+.+|+...+|.+
T Consensus 588 ~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~~i~~~~~~l~~ 664 (1227)
T COG5038 588 VKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGKVIATEGSTLPD 664 (1227)
T ss_pred cccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCceeccccccchH
Confidence 99996432 2233344888885 567888988 999999999999998875 778999999876 36788888899988
Q ss_pred cccCC-eeeeeeeceecccceEEEEEEEEeecCCCCCCCCC-CCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe
Q 005132 452 LVEGS-VRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQN-IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL 529 (713)
Q Consensus 452 l~~~~-~~~~w~~L~~~~~G~I~l~l~~~~~~~~~~~~~~~-~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~ 529 (713)
+.... ....||++. .++|+|.++..|.|+....++.... +..+.|.+++.|..|.+|......+.+|||++|.+++.
T Consensus 665 li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~ 743 (1227)
T COG5038 665 LIDRTLDTFLVFPLR-NPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNL 743 (1227)
T ss_pred hhhccccceEEEEcC-CCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEecce
Confidence 87554 467899998 5789999999999998876655544 77899999999999999998888999999999999884
Q ss_pred -EEEEEeeeCCCCCeeeeEEEEec--CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCC---CceeeE-------EEc-
Q 005132 530 -KKRTKVIFKTLNPQWHQTLEFPD--DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN---QMADKW-------IPL- 595 (713)
Q Consensus 530 -~~kT~v~~~t~nP~wne~~~f~v--~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~---~~~~~w-------~~L- 595 (713)
+++|-....|+||+|||..+.++ ..+.+.++++|++..+.|..+|++.++.+++... ...... -+|
T Consensus 744 ~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~ 823 (1227)
T COG5038 744 VKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLS 823 (1227)
T ss_pred eEEEEecccCccccceeeeEEEEecCCccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccc
Confidence 77999999999999999999998 4677999999999999999999999999887541 111111 112
Q ss_pred --CCCCCcEEEEEEEEEecC
Q 005132 596 --QGVRKGEIHVLITRKVPE 613 (713)
Q Consensus 596 --~~~~~G~i~~~l~~~~p~ 613 (713)
....+|++.+.+.| .|.
T Consensus 824 ~~~~~~~~tit~~~~f-~p~ 842 (1227)
T COG5038 824 LTGKKVKGTITYKCRF-YPA 842 (1227)
T ss_pred cccCCcceeEEEEEEE-Eee
Confidence 12457999999999 443
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-27 Score=260.93 Aligned_cols=217 Identities=32% Similarity=0.495 Sum_probs=191.0
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--C-CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF- 437 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~-~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~- 437 (713)
..|.|+|.+|++|+..+..|.+||||++++ + +.+++|++. +++||.|||+|.|.+... ...|.+.|||.|++
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfs 246 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFS 246 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcc
Confidence 379999999999999997788999999999 3 468999999 999999999999996553 78999999999999
Q ss_pred CCceeEEEEEeccccccCCeeeeeeeceec------ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccc
Q 005132 438 GDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVA 511 (713)
Q Consensus 438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~ 511 (713)
++++||++.++|..+........|.++... ..|+|.++++|. +..|.|+|.|++|++|..
T Consensus 247 r~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~--------------p~~g~ltv~v~kar~L~~ 312 (421)
T KOG1028|consen 247 RHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYL--------------PTAGRLTVVVIKARNLKS 312 (421)
T ss_pred cccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEee--------------cCCCeEEEEEEEecCCCc
Confidence 999999999999998876667789998753 137999999999 678999999999999999
Q ss_pred cccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEce
Q 005132 512 ADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQ 581 (713)
Q Consensus 512 ~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~ 581 (713)
.+..+.+||||++++-. .+++|.+.++++||+|||+|.|.++ ...|.|+|||+|.++++++||++.+...
T Consensus 313 ~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~ 392 (421)
T KOG1028|consen 313 MDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSD 392 (421)
T ss_pred ccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCC
Confidence 99999999999999943 3679999999999999999999874 5689999999999999999999999876
Q ss_pred e-----------c-CCCCceeeEEEcC
Q 005132 582 R-----------L-PPNQMADKWIPLQ 596 (713)
Q Consensus 582 ~-----------l-~~~~~~~~w~~L~ 596 (713)
. + .++.+..+|+.|.
T Consensus 393 ~~~~~~~hW~~m~~~p~~pv~~wh~l~ 419 (421)
T KOG1028|consen 393 STGEEVRHWQEMLNSPRKPVAQWHSLR 419 (421)
T ss_pred CCchHHHHHHHHHhCccCceeeeEecc
Confidence 4 1 2456777888775
No 3
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.4e-27 Score=255.38 Aligned_cols=214 Identities=23% Similarity=0.295 Sum_probs=186.9
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC---eEEEEEeeeCCCCCee
Q 005132 468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQW 544 (713)
Q Consensus 468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~w 544 (713)
..|+|.+++.|. .....|.|+|++|++|++.+..|.+||||++++.. .+.+|++.++|+||+|
T Consensus 152 ~~G~l~fsl~Yd--------------~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~f 217 (421)
T KOG1028|consen 152 AVGNLQFSLQYD--------------FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVF 217 (421)
T ss_pred eeeeEEEEEEec--------------ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCcc
Confidence 469999999998 78899999999999999999888999999999976 3679999999999999
Q ss_pred eeEEEEec-----CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC------CCcEEEEEEEEEecC
Q 005132 545 HQTLEFPD-----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITRKVPE 613 (713)
Q Consensus 545 ne~~~f~v-----~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~~~l~~~~p~ 613 (713)
||+|.|.+ ...+|.+.|||+|+|+++++||++.++|..+........|.+|... ..|||+++++| +|+
T Consensus 218 nEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y-~p~ 296 (421)
T KOG1028|consen 218 NETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCY-LPT 296 (421)
T ss_pred ccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEe-ecC
Confidence 99999996 4789999999999999999999999999999887778899999641 23799999999 998
Q ss_pred Cccc----------cCCCC---CCCcceeeecccchhhhhhhhhccccCCch-hhhhhhhhcCccchhHHHHHHHHHHHH
Q 005132 614 LDKR----------TSIDS---DSSSTRAHKISGQMKQMMVKFQSLIDDDNL-EELSTALSELETLEDSQEEYMVQLETE 679 (713)
Q Consensus 614 ~~~~----------~~~~~---~~p~~kv~~~~~~~r~~l~k~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (713)
++++ ..++. .|||+|+++++++.| ++|+||+++++++ |+||++|.|..+.+++++.+++-...+
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~--~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d 374 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKR--LSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD 374 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCce--eeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence 7766 23333 389999999999977 9999999999999 999999999999999999877733333
Q ss_pred HHHhhhhhhhhcccccccCC
Q 005132 680 QMLLLNKIKELGQEIINSSP 699 (713)
Q Consensus 680 ~~~~~~k~~~~~~~~~~~~~ 699 (713)
.+ .+++++.+|+.++|...
T Consensus 375 ~d-~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 375 HD-TLGSNDLIGRCILGSDS 393 (421)
T ss_pred cc-cccccceeeEEEecCCC
Confidence 33 37788899999999865
No 4
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.92 E-value=7.5e-23 Score=233.24 Aligned_cols=464 Identities=16% Similarity=0.213 Sum_probs=308.2
Q ss_pred eEEEEEeecCCeEEE--eeeecCCCCCcc--------CCccCcChHHHHHHHHHHHhhcceecCcc-----eeecc--cc
Q 005132 101 KAVLYSFVSIPDVRI--GVAFGSGGSQSL--------PATELPGVSNWLARLINETLVKTLVEPRR-----RCYSL--PA 163 (713)
Q Consensus 101 ~~v~~sf~~~P~v~~--~~~~g~~~~~~~--------~~~~~Pgl~~~~~~~i~~~l~~~~v~P~~-----~~~~l--~~ 163 (713)
..-.+.|...|.... ....+.....++ +--.+++..+=+.++|..++....+-|.+ +.++. -+
T Consensus 614 st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~P 693 (1227)
T COG5038 614 STGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKP 693 (1227)
T ss_pred ccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhhhccccceEEEEcCCCcceEEEEeccce
Confidence 334667777777763 222111111111 12356777888889999999999999887 22222 11
Q ss_pred ccc-----c---ccccccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCcE--EEEeec
Q 005132 164 VDL-----R---KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL--TRRTDA 233 (713)
Q Consensus 164 ~~l-----~---~~~~~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~~--~~tt~i 233 (713)
.++ . ....+|+++|+|..|.+|......+. +|||++|.++.. +||-..
T Consensus 694 i~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~----------------------~dPya~v~~n~~~k~rti~~ 751 (1227)
T COG5038 694 IYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGK----------------------SDPYATVLVNNLVKYRTIYG 751 (1227)
T ss_pred eeccccccceeeecCccceEEEEeehhhcccccccCcc----------------------cccceEEEecceeEEEEecc
Confidence 222 1 12235999999999999985444332 499999999754 444446
Q ss_pred CCCCCCcccceEEEEEecCCceEEEEEEEeCCCCCccceeEEEEEEcccccCCccceeecCCCCccccccccccCCe--e
Q 005132 234 RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDE--V 311 (713)
Q Consensus 234 ~~~~nP~WnEtf~~~v~~~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 311 (713)
..|.||+|||..|..+.+..+++.++++|++.. +.|..+|++.+.+.++... ++++.... .+.|.+ .
T Consensus 752 ~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~s-gddr~lg~~~i~vsn~~~k-------~~~s~~~~---~i~g~~~t~ 820 (1227)
T COG5038 752 SSTLNPIWNEILYVPVTSKNQRLTLECMDYEES-GDDRNLGEVNINVSNVSKK-------DEDSALME---TIDGAEETG 820 (1227)
T ss_pred cCccccceeeeEEEEecCCccEEeeeeecchhc-cccceeceeeeeeeeeeec-------CCCcceEE---eecCccccc
Confidence 799999999999999999999999999999973 5666999999999998751 11111000 001110 0
Q ss_pred eeeeccCCcceeeEEEEEEEeeec----c-----------------------CCCCCCCCCCcCCCCcccc-----c---
Q 005132 312 EMTVPFEGVNSGELTVRLVLKEWQ----F-----------------------SDGSHSLNNFHSGSQQSLS-----G--- 356 (713)
Q Consensus 312 ~~~~~~~~~~~G~l~~~l~l~~~~----~-----------------------~~~~~~~~~~~~~~~~~~~-----~--- 356 (713)
.+..+ ..+.+|.+++.+-+.+.. . .+.....-+.......... .
T Consensus 821 ~l~~~-~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~ 899 (1227)
T COG5038 821 KLSLT-GKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYS 899 (1227)
T ss_pred ccccc-cCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhh
Confidence 11111 112346666554222210 0 0000000000000000000 0
Q ss_pred -CC-----CcCcCCccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC--eEEeccCC-CCCCCccceEEEEEEeC-CCce
Q 005132 357 -SS-----NFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK--IVQRTRTA-HSPNHVWNQKFELDEIG-GGEC 426 (713)
Q Consensus 357 -~p-----~~~~~~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~--~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~ 426 (713)
.| ......+|.+.++|..++-.. +.-|+.+.+++ ...-+... .+..+.|.+.-.+.+.+ .-..
T Consensus 900 ~k~k~~lne~lq~~sgv~~i~i~~g~l~~-------~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~ 972 (1227)
T COG5038 900 LKPKLDLNEALQYKSGVLGIQILSGELPD-------PGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSE 972 (1227)
T ss_pred cchhhhhhhhhcccCCceEEEEEEeecCC-------cceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccce
Confidence 00 011123468899998887442 33577777754 33333333 55566666555555443 3566
Q ss_pred EEEEEEEecCCCCceeEEEEEeccccccCC-eeeeeeeceecccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEE
Q 005132 427 LMVKCYNEEIFGDENMGSARVNLEGLVEGS-VRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVE 505 (713)
Q Consensus 427 l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~ 505 (713)
..|.|.+.....|+.++..+++-.++..+. ....|+.+.+. ..+.+++.|.|+ +...+....-...|.|.|.+..
T Consensus 973 ~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~--~~~~v~~~~tPv--~~~l~~~emv~nsG~l~I~~~~ 1048 (1227)
T COG5038 973 TTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGS--AKVLVQVSYTPV--PVKLPPVEMVENSGYLTIMLRS 1048 (1227)
T ss_pred EEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCC--ceEEEEEEEeec--ccccCcceeecccCcEEEEEec
Confidence 778887753336889999999877776543 56678888764 789999999988 2233334445667999999999
Q ss_pred ccCccccccCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEce
Q 005132 506 ARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQ 581 (713)
Q Consensus 506 a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG~~~i~L~ 581 (713)
|.||++.|.+|.+||||++.++++ .++|+++++|+||+|||.+..++. .+.+.+.|+|||.-.+++.||.+.++|.
T Consensus 1049 ~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~ 1128 (1227)
T COG5038 1049 GENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLS 1128 (1227)
T ss_pred cCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHh
Confidence 999999999999999999999887 789999999999999999999985 6789999999999999999999999999
Q ss_pred ecCCCCceeeEEEcCCCC----CcEEEEEEEE
Q 005132 582 RLPPNQMADKWIPLQGVR----KGEIHVLITR 609 (713)
Q Consensus 582 ~l~~~~~~~~w~~L~~~~----~G~i~~~l~~ 609 (713)
.+..+.+...-.+|.+.. .|.++..+.+
T Consensus 1129 ~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~ 1160 (1227)
T COG5038 1129 KLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160 (1227)
T ss_pred hcCcCCccceeeeccCcceEecccEeecceec
Confidence 999998888889998755 4666666665
No 5
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.89 E-value=4.7e-23 Score=223.21 Aligned_cols=231 Identities=22% Similarity=0.310 Sum_probs=197.7
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeEE
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS 444 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~ 444 (713)
.|.|+|.+|+||++.+..|..||||.|.++. .+++|.++ +++.|.|.|.|.|.++..-..|.|.|||.|..+|+.||.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~D~~IGK 85 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKRDDIIGK 85 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccccccccccce
Confidence 5899999999999999999999999999975 58999999 999999999999999888999999999999449999999
Q ss_pred EEEeccccccCCeeeeeeeceecc-----cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCC
Q 005132 445 ARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSD 519 (713)
Q Consensus 445 ~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~D 519 (713)
+.|.=++|...+..+.|+.|..+. +|+|++++.+.+.. ....+++++++++++.+.+ ++.+|
T Consensus 86 vai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~------------~~~~~~c~~L~~r~~~P~~-~~~~d 152 (800)
T KOG2059|consen 86 VAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAI------------QSSGLVCHVLKTRQGLPII-NGQCD 152 (800)
T ss_pred eeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecccc------------CCCcchhhhhhhcccCcee-CCCCC
Confidence 999999998877888999998754 79999999887433 2344667778888887775 45599
Q ss_pred cEEEEEECCe----EEEEEeeeCCCCCeeeeEEEEecC------------------CCeEEEEEEE-CCCCCCCCeeEEE
Q 005132 520 PYVKVQYGDL----KKRTKVIFKTLNPQWHQTLEFPDD------------------GSPLTLHVRD-HNALLASSSIGDC 576 (713)
Q Consensus 520 Pyv~v~~~~~----~~kT~v~~~t~nP~wne~~~f~v~------------------~~~l~i~V~D-~d~~~~d~~iG~~ 576 (713)
||+++...+. ..+|++.++|.+|.|||.|+|.+. .-.|.+++|| .+.+..+.|+|++
T Consensus 153 p~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGev 232 (800)
T KOG2059|consen 153 PFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEV 232 (800)
T ss_pred cceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeE
Confidence 9999999664 359999999999999999999972 1358889998 6667779999999
Q ss_pred EEEceecCCCCceeeEEEcCC----------CCCcEEEEEEEEE
Q 005132 577 VVEYQRLPPNQMADKWIPLQG----------VRKGEIHVLITRK 610 (713)
Q Consensus 577 ~i~L~~l~~~~~~~~w~~L~~----------~~~G~i~~~l~~~ 610 (713)
.+++..+........||-|+. ..-|.+++.++|.
T Consensus 233 rv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 233 RVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred EeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 999998876667889999963 2238999999983
No 6
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=1.6e-21 Score=176.52 Aligned_cols=113 Identities=19% Similarity=0.377 Sum_probs=102.2
Q ss_pred CceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeC-CCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCe
Q 005132 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSS 572 (713)
Q Consensus 496 ~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~ 572 (713)
.|.|+|+|++|++++..+ .|.+||||++.+++++++|+++.+ ++||+|||+|.|++. ...|.|+|||+|.+++|++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER 79 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence 378999999999988776 789999999999999999999876 899999999999984 4689999999999999999
Q ss_pred eEEEEEEce-ecCCCCceeeEEEcCC----CCCcEEEEEEEE
Q 005132 573 IGDCVVEYQ-RLPPNQMADKWIPLQG----VRKGEIHVLITR 609 (713)
Q Consensus 573 iG~~~i~L~-~l~~~~~~~~w~~L~~----~~~G~i~~~l~~ 609 (713)
||++.|++. .+..++....|++|.+ ...|+|+++++|
T Consensus 80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 999999996 5778888999999976 456999999986
No 7
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.86 E-value=4.8e-21 Score=170.50 Aligned_cols=109 Identities=19% Similarity=0.310 Sum_probs=97.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC----eEEEEEeeeCCCCCeee
Q 005132 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD----LKKRTKVIFKTLNPQWH 545 (713)
Q Consensus 470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~----~~~kT~v~~~t~nP~wn 545 (713)
|+|++++.|. +..+.|+|+|++|+||+ ..|.+||||++++.. .+++|+++++|+||+||
T Consensus 1 ~~l~fsL~Y~--------------~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfn 63 (118)
T cd08677 1 PKLHYSLSYD--------------KQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWE 63 (118)
T ss_pred CeEEEEEEEc--------------CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccc
Confidence 5789999998 78899999999999998 346699999999964 47799999999999999
Q ss_pred eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEc
Q 005132 546 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 595 (713)
Q Consensus 546 e~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L 595 (713)
|+|.|.+. +.+|.|+|||+|+++++++||++.++++++..+.....|..|
T Consensus 64 E~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 64 EELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999984 678999999999999999999999999998777777889765
No 8
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.85 E-value=1.5e-20 Score=172.42 Aligned_cols=114 Identities=29% Similarity=0.434 Sum_probs=103.9
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccC-CCCCcEEEEEECC-----eEEEEEeeeCCCCC
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD-----LKKRTKVIFKTLNP 542 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~-----~~~kT~v~~~t~nP 542 (713)
+|+|++++.|. +..+.|.|+|++|+||++.+.. |.+||||++++.+ .+++|+++++|+||
T Consensus 1 ~G~i~~sl~y~--------------~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP 66 (125)
T cd08393 1 QGSVQFALDYD--------------PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNP 66 (125)
T ss_pred CcEEEEEEEEE--------------CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCC
Confidence 49999999998 6678999999999999999875 8999999999953 35799999999999
Q ss_pred eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 543 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 543 ~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
+|||+|.|++. ...|.++|||++.++++++||++.++|.++..+.....||+|+
T Consensus 67 ~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 67 VFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred ccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999999984 5789999999999999999999999999998888889999985
No 9
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.84 E-value=3.1e-20 Score=170.20 Aligned_cols=114 Identities=21% Similarity=0.345 Sum_probs=103.8
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCcccccc-CCCCCcEEEEEECC-----eEEEEEeeeCCCCC
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL-RGTSDPYVKVQYGD-----LKKRTKVIFKTLNP 542 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP 542 (713)
+|+|++++.|. +..+.|.|+|++|+||++.+. .|.+||||++++.+ .++||+++++++||
T Consensus 1 ~G~i~~sl~y~--------------~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP 66 (125)
T cd04029 1 SGEILFSLSYD--------------YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNP 66 (125)
T ss_pred CcEEEEEEEEE--------------CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCC
Confidence 59999999998 677999999999999998865 58999999999952 36799999999999
Q ss_pred eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 543 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 543 ~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
+|||+|.|++. ...|.|+|||++.++++++||++.++|..+........||+|+
T Consensus 67 ~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 67 VYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred cccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999999984 5679999999999999999999999999999988999999985
No 10
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=1.9e-20 Score=172.26 Aligned_cols=110 Identities=29% Similarity=0.469 Sum_probs=99.4
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--------CCeEEEEEEECCCCCCC
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--------GSPLTLHVRDHNALLAS 570 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--------~~~l~i~V~D~d~~~~d 570 (713)
++|+|++|+||+..+..|.+||||++.+++.+++|+++++|+||+|||+|.|.+. ...|.++|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 5799999999999999999999999999999999999999999999999999873 45799999999999999
Q ss_pred CeeEEEEEEceecC--CCCceeeEEEcCC------CCCcEEEEEEE
Q 005132 571 SSIGDCVVEYQRLP--PNQMADKWIPLQG------VRKGEIHVLIT 608 (713)
Q Consensus 571 ~~iG~~~i~L~~l~--~~~~~~~w~~L~~------~~~G~i~~~l~ 608 (713)
++||++.++|+++. .+....+||+|.+ ..+|+|+++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999987 5667899999974 24599999874
No 11
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.84 E-value=2.6e-20 Score=169.90 Aligned_cols=111 Identities=30% Similarity=0.530 Sum_probs=101.4
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 543 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 543 (713)
.|+|++++.|. .+.|+|+|++|+||++.+ .+.+||||++++.+ .+++|+++++++||+
T Consensus 1 ~G~l~~~l~y~----------------~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~ 63 (122)
T cd08381 1 GGQVKLSISYK----------------NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPT 63 (122)
T ss_pred CCeEEEEEEEe----------------CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCC
Confidence 38999999986 388999999999999999 89999999999963 478999999999999
Q ss_pred eeeEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 544 WHQTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 544 wne~~~f~v------~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
|||+|.|++ ....|.|+|||+|.++++++||++.++|.++..+.....||+|.
T Consensus 64 wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 122 (122)
T cd08381 64 FNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPLG 122 (122)
T ss_pred cccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence 999999986 36789999999999999999999999999999888889999983
No 12
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=1.2e-19 Score=168.65 Aligned_cols=120 Identities=30% Similarity=0.475 Sum_probs=109.2
Q ss_pred CCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCC
Q 005132 490 QNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNA 566 (713)
Q Consensus 490 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~ 566 (713)
+......|.|+|+|++|++|++.+..|.+||||++++++..++|+++++|+||.|||+|.|.+. ...|.|+|||+|.
T Consensus 8 ~~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 8 SQRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred ccCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 3455778999999999999999999999999999999999999999999999999999999974 5689999999999
Q ss_pred CCCCCeeEEEEEEceecCC-----CCceeeEEEcCCCCCcEEEEEEEE
Q 005132 567 LLASSSIGDCVVEYQRLPP-----NQMADKWIPLQGVRKGEIHVLITR 609 (713)
Q Consensus 567 ~~~d~~iG~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~i~~~l~~ 609 (713)
+++|++||++.+++.++.. ..+..+|..|.+..+|+|++++++
T Consensus 88 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 88 FSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 9999999999999998864 456778999999999999999987
No 13
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.82 E-value=1.5e-19 Score=166.00 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=102.0
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccC-CCCCcEEEEEECC-----eEEEEEeeeCCCCC
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD-----LKKRTKVIFKTLNP 542 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~-----~~~kT~v~~~t~nP 542 (713)
.|+|.+++.|. +..+.|.|+|++|+||++.+.. |.+||||++++.+ .++||+++++++||
T Consensus 1 ~G~i~~sl~Y~--------------~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nP 66 (128)
T cd08392 1 TGEIEFALHYN--------------FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNP 66 (128)
T ss_pred CcEEEEEEEEe--------------CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCC
Confidence 49999999998 6779999999999999999875 9999999999953 36799999999999
Q ss_pred eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCC---CCceeeEEEcC
Q 005132 543 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP---NQMADKWIPLQ 596 (713)
Q Consensus 543 ~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~---~~~~~~w~~L~ 596 (713)
+|||+|.|++. ...|.+.|||++.++++++||++.|+|.++.. ......||+|.
T Consensus 67 vfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 67 VFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred ccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99999999984 46899999999999999999999999999854 34688999984
No 14
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.82 E-value=1.7e-19 Score=168.20 Aligned_cols=119 Identities=28% Similarity=0.396 Sum_probs=104.3
Q ss_pred ceecccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccc-cCCCCCcEEEEEECC-----eEEEEEeee
Q 005132 464 LEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD-----LKKRTKVIF 537 (713)
Q Consensus 464 L~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~v~~ 537 (713)
+.....|+|.+++.|. .+.|.|+|++|+||++.+ ..|.+||||++++.. .++||++++
T Consensus 12 ~~~~~~G~l~lsl~y~----------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~k 75 (146)
T cd04028 12 LASPSMGDIQLGLYDK----------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR 75 (146)
T ss_pred ccCCCcceEEEEEEeC----------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecC
Confidence 3344579999999884 378999999999999874 578999999999954 377999999
Q ss_pred CCCCCeeeeEEEEec--CCCeEEEEEE-ECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132 538 KTLNPQWHQTLEFPD--DGSPLTLHVR-DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 598 (713)
Q Consensus 538 ~t~nP~wne~~~f~v--~~~~l~i~V~-D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 598 (713)
+|+||+|||+|.|++ .+..|.|+|| |++.++++++||++.|+|++++.+.....||+|...
T Consensus 76 ktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 76 KTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 999999999999998 4789999999 688889999999999999999888888999999753
No 15
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.82 E-value=2.9e-19 Score=163.11 Aligned_cols=112 Identities=32% Similarity=0.551 Sum_probs=103.3
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECC-eEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 574 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG 574 (713)
+|+|+|++|++|+..+..|.+||||++.+++ ..++|+++++|+||+|||+|.|.+. ...|.|+|||+|.+++|++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 5899999999999999999999999999987 5789999999999999999999974 678999999999999999999
Q ss_pred EEEEEceecCCCCceeeEEEcCCC----CCcEEEEEEEE
Q 005132 575 DCVVEYQRLPPNQMADKWIPLQGV----RKGEIHVLITR 609 (713)
Q Consensus 575 ~~~i~L~~l~~~~~~~~w~~L~~~----~~G~i~~~l~~ 609 (713)
++.++++++..+.....|++|.+. ..|+|++.++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~ 119 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTL 119 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEE
Confidence 999999999988889999999743 35999999998
No 16
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.81 E-value=2.9e-19 Score=163.85 Aligned_cols=114 Identities=27% Similarity=0.467 Sum_probs=105.0
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC---CeEEEEEeeeCCCCCeee
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH 545 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn 545 (713)
.|+|++++.|. +..+.|.|+|++|+||++.+..|.+||||++++. ...++|+++++++||+||
T Consensus 2 ~G~l~~sl~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wn 67 (124)
T cd08387 2 RGELHFSLEYD--------------KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD 67 (124)
T ss_pred CCEEEEEEEEC--------------CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcc
Confidence 59999999998 6679999999999999999999999999999994 246899999999999999
Q ss_pred eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 546 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 546 e~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
|+|.|.+. ...|.++|||++.+++|++||++.++|+++..+.....||+|+
T Consensus 68 e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 68 ESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred cEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 99999984 4689999999999999999999999999998888899999986
No 17
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=1.9e-19 Score=164.00 Aligned_cols=108 Identities=27% Similarity=0.425 Sum_probs=97.7
Q ss_pred eEEEEEEEccC---ccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCC----
Q 005132 498 WIELVIVEARD---LVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALL---- 568 (713)
Q Consensus 498 ~L~v~v~~a~~---L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~---- 568 (713)
.|+|+|++|++ |.++|..|++||||++.+++++.+|+++++++||+|||+|.|++. ...|.|+|||++.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 37899999999 889999999999999999999999999999999999999999983 568999999999874
Q ss_pred --CCCeeEEEEEEceecCCCCceeeEEEcCC------CCCcEEEE
Q 005132 569 --ASSSIGDCVVEYQRLPPNQMADKWIPLQG------VRKGEIHV 605 (713)
Q Consensus 569 --~d~~iG~~~i~L~~l~~~~~~~~w~~L~~------~~~G~i~~ 605 (713)
+|++||++.++|+.+..+.....||+|.. ...|+|++
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 89999999999999998888999999973 34577764
No 18
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.81 E-value=2.1e-19 Score=162.61 Aligned_cols=112 Identities=23% Similarity=0.438 Sum_probs=100.7
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-C-CCCCccceEEEEEEeCCCceEEEEEEEecCC-CCcee
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM 442 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~-t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~l 442 (713)
|.|.|+|++|++++..+ .|.+||||++.+++++++|+++ + +.||+|||+|.|.+......|.|+|||++.+ +|++|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 68999999999988766 7999999999999999999998 5 7999999999999877677899999999998 79999
Q ss_pred EEEEEecc-ccccCCeeeeeeecee----cccceEEEEEEE
Q 005132 443 GSARVNLE-GLVEGSVRDIWVPLEK----VNTGELRLQIEA 478 (713)
Q Consensus 443 G~~~i~l~-~l~~~~~~~~w~~L~~----~~~G~I~l~l~~ 478 (713)
|.+.+++. .+..+...+.|++|.+ ...|+|+|+++|
T Consensus 81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 99999996 5777777899999987 346999999986
No 19
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.81 E-value=3.8e-19 Score=161.07 Aligned_cols=111 Identities=32% Similarity=0.512 Sum_probs=103.6
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 574 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG 574 (713)
.++|+|++|++|++.+..+.+||||++++++.+.+|+++++|+||.|||+|.|.+. ...|.|+|||++.+++|++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 37899999999999998899999999999999999999999999999999999973 578999999999999999999
Q ss_pred EEEEEceecCCCCceeeEEEcCCCCCcEEEEEEEE
Q 005132 575 DCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 609 (713)
Q Consensus 575 ~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~~~l~~ 609 (713)
++.++|+++..+.....|++|.+. +|+|++.++|
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELEDG-EGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEe
Confidence 999999999988889999999864 6999999887
No 20
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=3e-19 Score=164.42 Aligned_cols=112 Identities=27% Similarity=0.398 Sum_probs=101.4
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCCCC-CC
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNALL-AS 570 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~d~~~-~d 570 (713)
.|+|+|++|++|++.+..|.+||||++++++++++|+++++++||+|||+|.|.+. ...|.|+|||++.++ +|
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 48999999999999998899999999999999999999999999999999999984 257999999999887 89
Q ss_pred CeeEEEEEEceecC-CCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132 571 SSIGDCVVEYQRLP-PNQMADKWIPLQGV-----RKGEIHVLITR 609 (713)
Q Consensus 571 ~~iG~~~i~L~~l~-~~~~~~~w~~L~~~-----~~G~i~~~l~~ 609 (713)
++||++.++++++. .+....+||+|+.. .+|+|++++.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 99999999999987 56778999999743 57999999876
No 21
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.80 E-value=5.5e-19 Score=160.77 Aligned_cols=110 Identities=26% Similarity=0.396 Sum_probs=102.0
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 572 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~ 572 (713)
|+|+|++|++|+..+..+.+||||++++++ .+++|+++++|+||+|||+|.|.+. ...|.|+|||+|.+ +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999963 5789999999999999999999984 45799999999998 8999
Q ss_pred eEEEEEEceecCCCCceeeEEEcCCCCCcEEEEEEEE
Q 005132 573 IGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 609 (713)
Q Consensus 573 iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~~~l~~ 609 (713)
||++.++++++..+.....|++|....+|+|+++|.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 9999999999999999999999999889999999987
No 22
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.80 E-value=1.1e-18 Score=160.54 Aligned_cols=114 Identities=30% Similarity=0.314 Sum_probs=101.7
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccC-CCCCcEEEEEECC---eEEEEEeeeCCCCCee
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD---LKKRTKVIFKTLNPQW 544 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~---~~~kT~v~~~t~nP~w 544 (713)
.|+|.+++.|. +....|+|+|++|+||+..+.. +.+||||++++.+ +++||+++++|+||+|
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~w 67 (128)
T cd08388 2 LGTLFFSLRYN--------------SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVY 67 (128)
T ss_pred CeEEEEEEEEE--------------CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCce
Confidence 59999999998 6779999999999999998875 8999999999953 4679999999999999
Q ss_pred eeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCC--CceeeEEEcC
Q 005132 545 HQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQ 596 (713)
Q Consensus 545 ne~~~f~-v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~--~~~~~w~~L~ 596 (713)
||+|.|. ++ ...|.++|||+|.+++|++||++.++|+++... .+...|++|+
T Consensus 68 nE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 68 DETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred eeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999994 42 457999999999999999999999999999654 6789999986
No 23
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.80 E-value=1.1e-18 Score=160.04 Aligned_cols=114 Identities=32% Similarity=0.459 Sum_probs=104.6
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeee
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWH 545 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wn 545 (713)
.|+|.+++.|. ...+.|+|+|++|+||++.+..+.+||||++++.+ .+++|+++++++||+||
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wn 67 (124)
T cd08385 2 LGKLQFSLDYD--------------FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 67 (124)
T ss_pred ccEEEEEEEEe--------------CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCcee
Confidence 59999999998 67799999999999999999889999999999953 46799999999999999
Q ss_pred eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 546 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 546 e~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
|+|.|.+. ...|.|+|||+|.++++++||++.++|+++..+...++|++|.
T Consensus 68 e~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 68 ETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999974 4689999999999999999999999999998888899999985
No 24
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.80 E-value=4.4e-19 Score=161.17 Aligned_cols=112 Identities=27% Similarity=0.415 Sum_probs=100.5
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeC-CCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 572 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~ 572 (713)
|.|+|+|++|++|+..+..+.+||||++++++.+++|+++.+ ++||+|||.|.|.+. ...|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 679999999999999999999999999999999999999764 799999999999984 467999999999876 899
Q ss_pred eEEEEEEceecCCCCceeeEEEcCC--CCCcEEEEEEEE
Q 005132 573 IGDCVVEYQRLPPNQMADKWIPLQG--VRKGEIHVLITR 609 (713)
Q Consensus 573 iG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~i~~~l~~ 609 (713)
||++.+++.++..+....+|++|.+ ...|+|+++++|
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 9999999999877767899999975 356999999986
No 25
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.79 E-value=1e-18 Score=161.88 Aligned_cols=114 Identities=26% Similarity=0.396 Sum_probs=97.8
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCcccccc--CCCCCcEEEEEECC-----eEEEEEeeeCCCC
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL--RGTSDPYVKVQYGD-----LKKRTKVIFKTLN 541 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~v~~~t~n 541 (713)
.|+|.+++.|. +..+.|.|.|++|+||+..+. .+.+||||+|++.. .++||+++++|+|
T Consensus 1 ~Gel~~sL~Y~--------------~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~n 66 (138)
T cd08407 1 TGEVLLSISYL--------------PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKIN 66 (138)
T ss_pred CCEEEEEEEEe--------------CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCC
Confidence 49999999998 778999999999999999883 35599999999965 2569999999999
Q ss_pred CeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec------------CCCCceeeEEEcC
Q 005132 542 PQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQ 596 (713)
Q Consensus 542 P~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l------------~~~~~~~~w~~L~ 596 (713)
|+|||+|.|.++ ...|.|+|||+|.++++++||++.+++..- .++.+..+|+.|+
T Consensus 67 PvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va~WH~L~ 138 (138)
T cd08407 67 PVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQLH 138 (138)
T ss_pred CccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchhEEEECC
Confidence 999999999984 578999999999999999999999998642 2345667777763
No 26
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=1.3e-18 Score=158.42 Aligned_cols=111 Identities=26% Similarity=0.366 Sum_probs=99.3
Q ss_pred EEEEEEEccCccccc-cCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132 499 IELVIVEARDLVAAD-LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 574 (713)
Q Consensus 499 L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG 574 (713)
|+|.|++|+||++.+ ..|.+||||+|.+++. ..+|+++++|+||+|||+|.|.+. ...|.+.|||++.+++|++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 689999999999874 4678999999999875 679999999999999999999995 478999999999999999999
Q ss_pred EEEEEceecCCCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132 575 DCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR 609 (713)
Q Consensus 575 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~~~l~~ 609 (713)
++.++++++..+.....||+|+.. ..|+|++++.+
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999999888888999999742 37999998764
No 27
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.79 E-value=1.2e-18 Score=159.39 Aligned_cols=113 Identities=21% Similarity=0.327 Sum_probs=103.4
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeee
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWH 545 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wn 545 (713)
.|+|.+++.|. +..+.|.|+|++|+||++.+..|.+||||++.+.+ ++++|+++++ +||+||
T Consensus 2 ~G~l~~sl~Y~--------------~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fn 66 (124)
T cd08389 2 CGDLDVAFEYD--------------PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFN 66 (124)
T ss_pred CEEEEEEEEEC--------------CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCccc
Confidence 59999999998 77799999999999999999999999999988843 5789999888 999999
Q ss_pred eEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 546 QTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 546 e~~~f~-v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
|+|.|+ +. ...|.++|||++.++++++||++.|+|+++..+.....|++|+
T Consensus 67 E~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 67 ETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 999998 53 6789999999999999999999999999999888999999997
No 28
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.79 E-value=1.6e-18 Score=159.19 Aligned_cols=114 Identities=29% Similarity=0.457 Sum_probs=104.1
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC---CeEEEEEeeeCCCCCeee
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH 545 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn 545 (713)
.|+|++++.|. +..+.|+|+|++|+||+..+..+.+||||++++. ..+.+|+++++|+||+||
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wn 67 (125)
T cd08386 2 LGRIQFSVSYD--------------FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 67 (125)
T ss_pred ccEEEEEEEEC--------------CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccc
Confidence 49999999997 6778999999999999999988999999999993 357899999999999999
Q ss_pred eEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 546 QTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 546 e~~~f~v------~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
|+|.|.+ ....|.++|||++.++++++||++.+++.++..+.....|++|+
T Consensus 68 e~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 68 ETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999974 24679999999999999999999999999999888899999986
No 29
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.79 E-value=9e-19 Score=159.49 Aligned_cols=111 Identities=19% Similarity=0.323 Sum_probs=99.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC------eEEEEEeeeCCCCCee
Q 005132 471 ELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQW 544 (713)
Q Consensus 471 ~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~w 544 (713)
+|.+++.|. +..+.|.|+|++|+||++.+..+.+||||++++.+ .+++|+++++++||+|
T Consensus 2 ~i~~sL~Y~--------------~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvf 67 (124)
T cd08680 2 QVQIGLRYD--------------SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVF 67 (124)
T ss_pred eEEEEEEEC--------------CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCcc
Confidence 588888887 77899999999999999998889999999999942 3689999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCC-CceeeEEEc
Q 005132 545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPL 595 (713)
Q Consensus 545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~-~~~~~w~~L 595 (713)
||+|.|++. ...|.++|||++.++++++||++.|+|++++.. .....||+|
T Consensus 68 nE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 68 NEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred ccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999984 679999999999999999999999999999655 458899986
No 30
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.79 E-value=1.6e-18 Score=161.24 Aligned_cols=115 Identities=28% Similarity=0.438 Sum_probs=100.3
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC------------CCeEEEEEEEC
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD------------GSPLTLHVRDH 564 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~------------~~~l~i~V~D~ 564 (713)
++|+|+|++|++|+..|..|.+||||+|++++.+++|+++++|+||.|||+|.|.+. ...|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 478999999999999999999999999999999999999999999999999999741 25699999999
Q ss_pred CCCCCCCeeEEEEE-EceecC---CCCceeeEEEcCC--CCCcEEEEEEEEEec
Q 005132 565 NALLASSSIGDCVV-EYQRLP---PNQMADKWIPLQG--VRKGEIHVLITRKVP 612 (713)
Q Consensus 565 d~~~~d~~iG~~~i-~L~~l~---~~~~~~~w~~L~~--~~~G~i~~~l~~~~p 612 (713)
|..++|++||++.+ ++..+. ...+..+|++|.. ...|+|++++++ ++
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~-~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFEL-IE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEE-EE
Confidence 99999999999997 555443 3467889999973 457999999998 54
No 31
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=1.3e-18 Score=158.68 Aligned_cols=112 Identities=32% Similarity=0.626 Sum_probs=102.4
Q ss_pred ceEEEEEEEccCcccccc------CCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCC
Q 005132 497 GWIELVIVEARDLVAADL------RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNAL 567 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~------~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~ 567 (713)
|.|+|+|++|+||+..+. .|.+||||++++++..++|+++++|.||+|||+|.|.+. ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998874 368999999999999999999999999999999999874 67899999999988
Q ss_pred CCCCeeEEEEEEceecCCCCceeeEEEcCCCCCcEEEEEEEE
Q 005132 568 LASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 609 (713)
Q Consensus 568 ~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~~~l~~ 609 (713)
+|++||++.++++++..+....+||+|.+...|+|++++++
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 89999999999999987777899999998889999998864
No 32
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=1.3e-18 Score=164.19 Aligned_cols=112 Identities=24% Similarity=0.445 Sum_probs=100.3
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeC-CCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCee
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSI 573 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~i 573 (713)
.|+|+|++|++|++.+..|.+||||++.+++++++|+++.+ |+||+|||+|.|.+. ...|.|+|+|++..++|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 37899999999999999999999999999999999999877 699999999999984 46899999999999899999
Q ss_pred EEEEEEceecCC----CCceeeEEEcCCC-----------CCcEEEEEEEE
Q 005132 574 GDCVVEYQRLPP----NQMADKWIPLQGV-----------RKGEIHVLITR 609 (713)
Q Consensus 574 G~~~i~L~~l~~----~~~~~~w~~L~~~-----------~~G~i~~~l~~ 609 (713)
|++.++|+++.. +....+||+|.+. .+|+|++.++|
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~ 131 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCL 131 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEe
Confidence 999999999864 3457999999753 24999999999
No 33
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.79 E-value=2.2e-18 Score=158.66 Aligned_cols=114 Identities=23% Similarity=0.433 Sum_probs=104.0
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC-----CeEEEEEeeeCCCCCe
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ 543 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~ 543 (713)
.|+|.+++.|. +..+.|+|+|++|+||+..+..+.+||||++++. ..+++|++++++.||+
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~ 67 (127)
T cd04030 2 LGRIQLTIRYS--------------SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPV 67 (127)
T ss_pred CeEEEEEEEEe--------------CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCE
Confidence 59999999998 6679999999999999999988999999999995 3578999999999999
Q ss_pred eeeEEEEecC-----CCeEEEEEEECCCC--CCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 544 WHQTLEFPDD-----GSPLTLHVRDHNAL--LASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 544 wne~~~f~v~-----~~~l~i~V~D~d~~--~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
|||+|.|.+. ...|.+.|||++.+ ++|++||++.++|.++..+.....||+|.
T Consensus 68 wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 68 FDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 9999999984 46899999999986 78999999999999998888889999984
No 34
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.79 E-value=1.6e-18 Score=159.24 Aligned_cols=113 Identities=31% Similarity=0.482 Sum_probs=100.1
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 543 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 543 (713)
.|+|.+++.|. +..+.|+|+|++|++|+..+..+.+||||++++.+ .+++|+++++|+||+
T Consensus 2 ~G~l~~~l~~~--------------~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 67 (125)
T cd04031 2 TGRIQIQLWYD--------------KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPE 67 (125)
T ss_pred cEEEEEEEEEe--------------CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCc
Confidence 49999999998 67799999999999999999889999999999964 577999999999999
Q ss_pred eeeEEEEec-C-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 544 WHQTLEFPD-D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 544 wne~~~f~v-~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
|||+|.|.+ . ...|.|+|||++.++++++||++.++|++.. ......||+|+
T Consensus 68 wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 68 WNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred cccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 999999985 2 4689999999999999999999999999843 23457999985
No 35
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.78 E-value=1.5e-18 Score=160.77 Aligned_cols=98 Identities=26% Similarity=0.368 Sum_probs=89.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee
Q 005132 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 544 (713)
Q Consensus 470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 544 (713)
|+|.++++|. +....|.|+|++|+||+..+..|.+||||++++.+ .++||+++++|+||+|
T Consensus 2 G~i~~sL~Y~--------------~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~ 67 (136)
T cd08406 2 GEILLSLSYL--------------PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIF 67 (136)
T ss_pred cEEEEEEEEc--------------CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCee
Confidence 8999999998 67789999999999999999899999999999943 2668999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEce
Q 005132 545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQ 581 (713)
Q Consensus 545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~ 581 (713)
||+|.|.++ ...|.|+|||+|.++++++||++.|+..
T Consensus 68 nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 68 NEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA 109 (136)
T ss_pred ceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC
Confidence 999999984 6789999999999999999999999865
No 36
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.78 E-value=1.6e-18 Score=159.86 Aligned_cols=113 Identities=33% Similarity=0.559 Sum_probs=102.1
Q ss_pred ceEEEEEEEccCcccccc--CCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCC
Q 005132 497 GWIELVIVEARDLVAADL--RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASS 571 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~ 571 (713)
|.|+|.|++|++|+..+. .+.+||||++.+++.+++|+++++|+||.|||+|.|++. ...|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 679999999999999888 889999999999999999999999999999999999984 688999999999999999
Q ss_pred eeEEEEEEceecC---CCCceeeEEEcCCC-------CCcEEEEEEEE
Q 005132 572 SIGDCVVEYQRLP---PNQMADKWIPLQGV-------RKGEIHVLITR 609 (713)
Q Consensus 572 ~iG~~~i~L~~l~---~~~~~~~w~~L~~~-------~~G~i~~~l~~ 609 (713)
+||++.+++.++. ......+||+|.+. ..|+|++++++
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 9999999999986 33457899999864 47999999874
No 37
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.78 E-value=2.4e-18 Score=157.45 Aligned_cols=112 Identities=29% Similarity=0.457 Sum_probs=101.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccc-cCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 543 (713)
Q Consensus 470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 543 (713)
|+|.++++|. ...+.|.|+|++|+||+..+ ..+.+||||++++.+ .+++|+++++++||+
T Consensus 1 G~i~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (123)
T cd08521 1 GEIEFSLSYN--------------YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPV 66 (123)
T ss_pred CeEEEEEEEe--------------CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCc
Confidence 8999999997 67799999999999999988 788999999999842 467999999999999
Q ss_pred eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEc
Q 005132 544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 595 (713)
Q Consensus 544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L 595 (713)
|||+|.|.+. ...|.|+|||++.++++++||++.++|+++..+.....||+|
T Consensus 67 wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 67 FNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999974 468999999999999999999999999999877788999987
No 38
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.78 E-value=1.6e-18 Score=157.31 Aligned_cols=109 Identities=25% Similarity=0.433 Sum_probs=96.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee
Q 005132 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 544 (713)
Q Consensus 470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 544 (713)
|+|++++.|. .+.|.|+|++|+||++.+ .|.+||||++++.+ .++||+++++|+||+|
T Consensus 1 G~l~l~~~~~----------------~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~ 63 (119)
T cd08685 1 GQLKLSIEGQ----------------NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLF 63 (119)
T ss_pred CEEEEEEEEc----------------CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCcc
Confidence 7888888774 478999999999999998 88999999999964 3679999999999999
Q ss_pred eeEEEEecC----CCeEEEEEEECCCCC-CCCeeEEEEEEceecCCCCceeeEEEc
Q 005132 545 HQTLEFPDD----GSPLTLHVRDHNALL-ASSSIGDCVVEYQRLPPNQMADKWIPL 595 (713)
Q Consensus 545 ne~~~f~v~----~~~l~i~V~D~d~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L 595 (713)
||+|.|++. ...|.++|||++..+ ++++||++.|+|.++..+.....||.|
T Consensus 64 nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 64 HETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred ccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 999999984 356899999999876 478999999999999878788999986
No 39
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.78 E-value=1.8e-18 Score=156.22 Aligned_cols=99 Identities=23% Similarity=0.331 Sum_probs=88.2
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEEC-----C--eEEEEEeeeCCCCCeeeeEEEEecCC------CeEEEEEEEC
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYG-----D--LKKRTKVIFKTLNPQWHQTLEFPDDG------SPLTLHVRDH 564 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~--~~~kT~v~~~t~nP~wne~~~f~v~~------~~l~i~V~D~ 564 (713)
.|+|+|++|++|+..+ .|.+||||+|++. . ++++|+++.+|+||+|||+|.|.+.. ..|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999887 4899999999983 2 35689999999999999999999842 3599999999
Q ss_pred CCCCCCCeeEEEEEEceecCCCCceeeEEEcCC
Q 005132 565 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 597 (713)
Q Consensus 565 d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 597 (713)
|..++|++||++.++|.++..++....|++|..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 988889999999999999999888999999964
No 40
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.77 E-value=5.6e-18 Score=155.76 Aligned_cols=109 Identities=25% Similarity=0.367 Sum_probs=99.1
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEECC--eEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 574 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG 574 (713)
|.|+|++|+||+. ..|.+||||+++++. .+++|+++++|+||+|||.|.|.+. ...|.|+|||++..++|++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5799999999988 678999999999974 5789999999999999999999984 578999999999999999999
Q ss_pred EEEEEceecCCCCceeeEEEcCCC------CCcEEEEEEEE
Q 005132 575 DCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITR 609 (713)
Q Consensus 575 ~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~~~l~~ 609 (713)
++.+++.++..+.....|++|++. ..|+|.+++.|
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~ 119 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLF 119 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEE
Confidence 999999999887778899999743 47999999999
No 41
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.77 E-value=1.2e-18 Score=160.70 Aligned_cols=92 Identities=28% Similarity=0.605 Sum_probs=86.7
Q ss_pred CCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCe
Q 005132 495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSS 572 (713)
Q Consensus 495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~ 572 (713)
..|.|+|+|.+|.||..+|..++|||||.+.+++++.+|+++++++||+|||.|+|.+. ...|.++|||+|.+++||+
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~ 83 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDF 83 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccc
Confidence 45899999999999999999899999999999999999999999999999999999984 7889999999999999999
Q ss_pred eEEEEEEceecCCC
Q 005132 573 IGDCVVEYQRLPPN 586 (713)
Q Consensus 573 iG~~~i~L~~l~~~ 586 (713)
||.++|+|..+...
T Consensus 84 mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 84 MGEATIPLKPLLEA 97 (168)
T ss_pred cceeeeccHHHHHH
Confidence 99999999988654
No 42
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.76 E-value=1.3e-17 Score=152.72 Aligned_cols=113 Identities=24% Similarity=0.317 Sum_probs=102.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccc-cCCCCCcEEEEEEC---CeEEEEEeeeCCCCCeee
Q 005132 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH 545 (713)
Q Consensus 470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn 545 (713)
|+|.+++.|. +..+.|.|+|++|+||+..+ ..+.+||||++++. ...++|+++++++||+||
T Consensus 1 G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wn 66 (123)
T cd08390 1 GRLWFSVQYD--------------LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFD 66 (123)
T ss_pred CEEEEEEEEC--------------CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccc
Confidence 8999999998 67789999999999999998 68899999999984 346799999999999999
Q ss_pred eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 546 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 546 e~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
|+|.|.+. ...|.|+|||++..+++++||++.++|+++........|++|.
T Consensus 67 e~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 67 ETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred eEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999984 3689999999999999999999999999998888889999986
No 43
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.76 E-value=5.9e-18 Score=184.00 Aligned_cols=238 Identities=18% Similarity=0.262 Sum_probs=179.2
Q ss_pred cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC--cEEEEeecCCCCCCcccceEEEEEe
Q 005132 173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--ELTRRTDARPGSDPRWDSMFNMVLH 250 (713)
Q Consensus 173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g--~~~~tt~i~~~~nP~WnEtf~~~v~ 250 (713)
--|+|+|.+|+||+..+..|++ ||||.|.+. ++.||.++.+++.|.|.|.|+|.+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~----------------------D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP 62 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMR----------------------DCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIP 62 (800)
T ss_pred cceeEEEeecccCCCCCCCCCc----------------------CcceEEeecchhhhhhhhhhhhcCCccccceEEecC
Confidence 3589999999999998887765 999999995 6789999999999999999999998
Q ss_pred cCCceEEEEEEEeCCCCCccceeEEEEEEcccccCCccceeecCCCCccccccccccCCeeeeeeccCCcceeeEEEEEE
Q 005132 251 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLV 330 (713)
Q Consensus 251 ~~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~l~ 330 (713)
-.-.-|.|.|||.| ..+||.||.+.|.=.+|...+. .+.|+.+.. +..+....|++++++-
T Consensus 63 ~~F~~l~fYv~D~d--~~~D~~IGKvai~re~l~~~~~-----------~d~W~~L~~------VD~dsEVQG~v~l~l~ 123 (800)
T KOG2059|consen 63 RTFRYLSFYVWDRD--LKRDDIIGKVAIKREDLHMYPG-----------KDTWFSLQP------VDPDSEVQGKVHLELA 123 (800)
T ss_pred cceeeEEEEEeccc--cccccccceeeeeHHHHhhCCC-----------Cccceeccc------cCCChhhceeEEEEEE
Confidence 77899999999999 4799999999998888875321 223322210 0111223588887775
Q ss_pred EeeeccCCCCCCCCCCcCCCCcccccCCCcCcCCccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC----eEEeccCC-
Q 005132 331 LKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK----IVQRTRTA- 405 (713)
Q Consensus 331 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~----~~~kT~~~- 405 (713)
+.+...+ .-+...+.+++++-+.. ++.+||||++...+ +..+|+++
T Consensus 124 ~~e~~~~----------------------------~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~k 174 (800)
T KOG2059|consen 124 LTEAIQS----------------------------SGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKK 174 (800)
T ss_pred eccccCC----------------------------CcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceee
Confidence 4321110 12333344555665544 45599999999843 34699999
Q ss_pred CCCCCccceEEEEEEeCC----------------CceEEEEEEEe-cCC-CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132 406 HSPNHVWNQKFELDEIGG----------------GECLMVKCYNE-EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 467 (713)
Q Consensus 406 ~t~nP~wne~f~f~v~~~----------------~~~l~i~V~d~-~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 467 (713)
++.+|.|+|.|.|.+..+ ...|++.+|++ +.. .+.++|++.+++...........||.|...
T Consensus 175 kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~ 254 (800)
T KOG2059|consen 175 KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPR 254 (800)
T ss_pred eccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecC
Confidence 999999999999997544 34789999984 444 799999999999998877778899999753
Q ss_pred c----------cceEEEEEEEEe
Q 005132 468 N----------TGELRLQIEATR 480 (713)
Q Consensus 468 ~----------~G~I~l~l~~~~ 480 (713)
. -|.+++.+.|..
T Consensus 255 ~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 255 PNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred CCcccCCCCCCccceeeeEEeee
Confidence 2 378999998863
No 44
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.76 E-value=7.8e-18 Score=154.13 Aligned_cols=110 Identities=30% Similarity=0.518 Sum_probs=98.9
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 574 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG 574 (713)
.|+|+|++|++|+..+..+.+||||++++++.+.+|+++++|+||.|||+|.|.+. ...|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 48999999999999998889999999999999999999999999999999999984 467999999999999999999
Q ss_pred EEEEEceecCCCCceeeEEEcCC---------CCCcEEEEEE
Q 005132 575 DCVVEYQRLPPNQMADKWIPLQG---------VRKGEIHVLI 607 (713)
Q Consensus 575 ~~~i~L~~l~~~~~~~~w~~L~~---------~~~G~i~~~l 607 (713)
++.++|+++..+.....||.|.. ...|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999977777889999963 2348888765
No 45
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.76 E-value=6.5e-18 Score=161.65 Aligned_cols=127 Identities=25% Similarity=0.398 Sum_probs=107.6
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC-----CeEEEEEeeeCCCCCe
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ 543 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~ 543 (713)
.|+|.+++.|.+....... .......+.|+|+|++|+||+..+..+.+||||++++. ..+++|+++++|+||+
T Consensus 1 ~G~l~~~l~y~~~~~~~~~--~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~ 78 (162)
T cd04020 1 RGELKVALKYVPPESEGAL--KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPV 78 (162)
T ss_pred CceEEEEEEecCccccccc--cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCC
Confidence 4999999999965432211 12335779999999999999999989999999999983 3578999999999999
Q ss_pred eeeEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCC
Q 005132 544 WHQTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 597 (713)
Q Consensus 544 wne~~~f~v------~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 597 (713)
|||+|.|.+ ....|.|+|||++.+++|++||++.+++.++........|+.+.+
T Consensus 79 WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 79 WNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 999999984 245799999999999999999999999999987777889998864
No 46
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=1.4e-17 Score=152.92 Aligned_cols=109 Identities=24% Similarity=0.434 Sum_probs=95.9
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC-C--CeEEEEEEECCCCCCCCe
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-G--SPLTLHVRDHNALLASSS 572 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~--~~l~i~V~D~d~~~~d~~ 572 (713)
..|+|+|++|+||+.. +.+||||+|.+++. ..+|++ ++++||.|||+|.|.+. . ..++|.|||++.+++|++
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 4699999999999875 47899999999875 468887 56899999999999863 2 579999999999999999
Q ss_pred eEEEEEEceecCCCCceeeEEEcCCC------CCcEEEEEEEE
Q 005132 573 IGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITR 609 (713)
Q Consensus 573 iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~~~l~~ 609 (713)
||++.++|+.+..+.....||+|.+. ..|+|+++++|
T Consensus 80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~ 122 (126)
T cd08400 80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARY 122 (126)
T ss_pred EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEE
Confidence 99999999999888888999999643 34999999999
No 47
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=8e-18 Score=156.30 Aligned_cols=112 Identities=30% Similarity=0.443 Sum_probs=99.0
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECCe-------EEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCC
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALL 568 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~ 568 (713)
.|+|+|++|++|+..+..|.+||||++++.+. +++|+++++|+||.|||+|.|.+. ...|.++|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 37999999999999998899999999999764 579999999999999999999984 567999999999999
Q ss_pred CCCeeEEEEEEceecCCCC------ceeeEEEcCC-----CCCcEEEEEEEE
Q 005132 569 ASSSIGDCVVEYQRLPPNQ------MADKWIPLQG-----VRKGEIHVLITR 609 (713)
Q Consensus 569 ~d~~iG~~~i~L~~l~~~~------~~~~w~~L~~-----~~~G~i~~~l~~ 609 (713)
+|++||++.+++.++..+. ...+||+|++ ...|+|+++++|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 9999999999999987543 3569999974 347999999987
No 48
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.75 E-value=8.5e-18 Score=153.13 Aligned_cols=106 Identities=31% Similarity=0.572 Sum_probs=94.4
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEE
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGD 575 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG~ 575 (713)
|+|+|++|+||+.. .+||||++.+++.+.+|+++++|+||+|||+|.|.+. ...|.++|||+|.. ++++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 78999999999887 7899999999999999999999999999999999984 57899999999987 7899999
Q ss_pred EEEEceecCCCC-----ceeeEEEcCCCC----CcEEEEEEEE
Q 005132 576 CVVEYQRLPPNQ-----MADKWIPLQGVR----KGEIHVLITR 609 (713)
Q Consensus 576 ~~i~L~~l~~~~-----~~~~w~~L~~~~----~G~i~~~l~~ 609 (713)
+.++|+++..+. ...+||+|.+.. +|+|++++.|
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 999999986432 357999997543 5999999977
No 49
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.75 E-value=1.6e-17 Score=151.12 Aligned_cols=111 Identities=27% Similarity=0.541 Sum_probs=100.6
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 574 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG 574 (713)
|.|+|+|++|++|+..+..+.+||||++++++...+|+++++|.||.|||+|.|++. ...+.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 679999999999999998899999999999999999999999999999999999984 678999999999999999999
Q ss_pred EEEEEceecCCCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132 575 DCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR 609 (713)
Q Consensus 575 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~~~l~~ 609 (713)
++.+++.++..+. .+|++|... ..|+|++++++
T Consensus 81 ~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 81 KVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999987553 689999642 47999999986
No 50
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.75 E-value=6.1e-18 Score=155.50 Aligned_cols=110 Identities=28% Similarity=0.510 Sum_probs=97.7
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC------CCceEEEEEEEecCC-CC
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG------GGECLMVKCYNEEIF-GD 439 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~------~~~~l~i~V~d~~~~-~d 439 (713)
++|+|++|+||+.++..|.+||||+++++++.++|+++ ++.||+|||+|.|.+.. ....|.|+|||++.+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999999889999999999999999999999 99999999999999876 367899999999987 79
Q ss_pred ceeEEEEEeccccc--cCCeeeeeeeceec------ccceEEEEEE
Q 005132 440 ENMGSARVNLEGLV--EGSVRDIWVPLEKV------NTGELRLQIE 477 (713)
Q Consensus 440 ~~lG~~~i~l~~l~--~~~~~~~w~~L~~~------~~G~I~l~l~ 477 (713)
++||++.+++.++. .+.....||+|.+. ..|+|+++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999987 55567899999752 3589988863
No 51
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.75 E-value=1.3e-17 Score=151.89 Aligned_cols=101 Identities=27% Similarity=0.396 Sum_probs=94.0
Q ss_pred EEEEEEEEeEc---CCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-----
Q 005132 367 KINVTVVEGKD---LMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF----- 437 (713)
Q Consensus 367 ~L~V~I~~a~~---L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~----- 437 (713)
.|.|+|++|++ |..++..|.+||||+++++++.+||+++ ++.||+|||+|.|.+.++...|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 38999999999 8888999999999999999999999999 99999999999999987777999999999875
Q ss_pred --CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132 438 --GDENMGSARVNLEGLVEGSVRDIWVPLEKV 467 (713)
Q Consensus 438 --~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 467 (713)
+|++||++.+++..+..+.....||+|...
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~ 112 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL 112 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeEeC
Confidence 899999999999999988888999999853
No 52
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=8.4e-18 Score=157.78 Aligned_cols=98 Identities=27% Similarity=0.314 Sum_probs=87.8
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC------------------C
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD------------------G 554 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~------------------~ 554 (713)
.|+|+|++|+||++ .+|.+||||+|++.+ .+++|+++++|+||+|||+|.|.+. .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999998 578999999999976 5789999999999999999999983 2
Q ss_pred CeEEEEEEECCCCCCCCeeEEEEEEceecCCC-CceeeEEEcCC
Q 005132 555 SPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPLQG 597 (713)
Q Consensus 555 ~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~-~~~~~w~~L~~ 597 (713)
..|.|+|||++.+++|++||++.|+|..+..+ .....||+|..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 46999999999999999999999999999876 67799999963
No 53
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=2e-17 Score=150.84 Aligned_cols=110 Identities=30% Similarity=0.503 Sum_probs=97.7
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeEE
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGD 575 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG~ 575 (713)
|.|+|++|++|++.+..|.+||||++.+++. ..+|+++++|+||+|||.|.|.+. ...|.|+|||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 7899999999999999999999999999876 469999999999999999999985 4789999999999999999999
Q ss_pred EEEEceecCCC-CceeeEEEcCCC-----CCcEEEEEEE
Q 005132 576 CVVEYQRLPPN-QMADKWIPLQGV-----RKGEIHVLIT 608 (713)
Q Consensus 576 ~~i~L~~l~~~-~~~~~w~~L~~~-----~~G~i~~~l~ 608 (713)
+.++++.+... .....|++|.+. ..|+|+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999888643 347899999753 3799998875
No 54
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.74 E-value=3e-17 Score=156.44 Aligned_cols=113 Identities=26% Similarity=0.451 Sum_probs=99.6
Q ss_pred CceEEEEEEEccCccccc------------------------------cCCCCCcEEEEEECCeE-EEEEeeeCCCCCee
Q 005132 496 NGWIELVIVEARDLVAAD------------------------------LRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQW 544 (713)
Q Consensus 496 ~~~L~v~v~~a~~L~~~d------------------------------~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~w 544 (713)
-|.|.|+|++|++|+++| ..|++||||+|++++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 388999999999999877 35778999999999865 69999999999999
Q ss_pred eeEEEEecC--CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCC------CCCcEEEEEEEE
Q 005132 545 HQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG------VRKGEIHVLITR 609 (713)
Q Consensus 545 ne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~------~~~G~i~~~l~~ 609 (713)
||+|.|.+. ...|.|+|||+|.++ +++||++.++++++..+.....|++|.+ ...|+|+++++|
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999973 568999999999875 5799999999999988888999999964 235899999987
No 55
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.74 E-value=2.3e-17 Score=153.82 Aligned_cols=101 Identities=29% Similarity=0.468 Sum_probs=91.1
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 543 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 543 (713)
.|+|.+++.|. +..+.|+|.|++|++|+..+..|.+||||+|++.+ .+++|+++++++||.
T Consensus 1 ~G~l~~~l~y~--------------~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 66 (136)
T cd08402 1 LGDICFSLRYV--------------PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPY 66 (136)
T ss_pred CcEEEEEeEEc--------------CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCc
Confidence 38999999998 77899999999999999999999999999999942 357899999999999
Q ss_pred eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec
Q 005132 544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL 583 (713)
Q Consensus 544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l 583 (713)
|||+|.|++. ...|.|+|||++.+++|++||++.+++...
T Consensus 67 wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 67 YNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred ccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC
Confidence 9999999984 347999999999999999999999998753
No 56
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.74 E-value=1.7e-17 Score=150.64 Aligned_cols=113 Identities=22% Similarity=0.407 Sum_probs=101.2
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-C-CCCCccceEEEEEEeCC-CceEEEEEEEecCCCCcee
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM 442 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~-t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~l 442 (713)
|.|.|+|++|++|+..+..+.+||||++.+++..++|+++ + +.||.|||.|.|.+..+ ...|.|+|||++..+|++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 5899999999999999988999999999999999999988 4 78999999999998774 6789999999987778999
Q ss_pred EEEEEeccccccCCeeeeeeeceec--ccceEEEEEEE
Q 005132 443 GSARVNLEGLVEGSVRDIWVPLEKV--NTGELRLQIEA 478 (713)
Q Consensus 443 G~~~i~l~~l~~~~~~~~w~~L~~~--~~G~I~l~l~~ 478 (713)
|++.+++.++..+.....|++|... ..|+|+++++|
T Consensus 81 G~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 9999999998877677899999864 46999999875
No 57
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.74 E-value=3.6e-17 Score=149.30 Aligned_cols=114 Identities=32% Similarity=0.529 Sum_probs=103.3
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeE
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 443 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG 443 (713)
.|.|+|++|++|+..+..|.+||||++++++ ..++|+++ ++.||.|||+|.|.+......|.|+|||++.. +|++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 3889999999999999889999999999976 68999999 99999999999999877678999999999998 899999
Q ss_pred EEEEeccccccCCeeeeeeeceecc----cceEEEEEEEEe
Q 005132 444 SARVNLEGLVEGSVRDIWVPLEKVN----TGELRLQIEATR 480 (713)
Q Consensus 444 ~~~i~l~~l~~~~~~~~w~~L~~~~----~G~I~l~l~~~~ 480 (713)
.+.+++.++..+...+.|++|.+.. .|+|++.+.+.|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 9999999999888888999997543 699999998863
No 58
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.74 E-value=4.6e-17 Score=147.41 Aligned_cols=112 Identities=27% Similarity=0.505 Sum_probs=103.3
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCceeE
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 443 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~lG 443 (713)
+++|+|++|++|+..+..+.+||||++++++..++|+++ ++.||.|||+|.|.+..+ ...|.|+|||++.. ++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 378999999999999888999999999999999999999 999999999999998775 78999999999987 899999
Q ss_pred EEEEeccccccCCeeeeeeeceecccceEEEEEEEE
Q 005132 444 SARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT 479 (713)
Q Consensus 444 ~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~l~l~~~ 479 (713)
.+.+++.++..+.....|++|++. .|+|++.+.|.
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 999999999988888999999975 69999998774
No 59
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.73 E-value=2.9e-17 Score=149.80 Aligned_cols=113 Identities=30% Similarity=0.552 Sum_probs=102.6
Q ss_pred cEEEEEEEEeEcCCCCCC------CCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC-CCceEEEEEEEecCC
Q 005132 366 RKINVTVVEGKDLMPKDK------SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF 437 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~------~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~ 437 (713)
|.|.|+|++|++|+..+. .|.+||||++++++..++|+++ ++.||.|||.|.|.+.. ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999987764 3689999999999999999999 99999999999999875 478999999999877
Q ss_pred CCceeEEEEEeccccccCCeeeeeeeceecccceEEEEEEE
Q 005132 438 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 478 (713)
Q Consensus 438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~l~l~~ 478 (713)
++++||.+.+++.++..+...+.||+|.+..+|+|+++++|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 88999999999999988777889999998888999999876
No 60
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.73 E-value=3.9e-17 Score=152.07 Aligned_cols=100 Identities=18% Similarity=0.271 Sum_probs=90.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC------eEEEEEeeeCCCCCe
Q 005132 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQ 543 (713)
Q Consensus 470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~ 543 (713)
|+|.+++.|. +..+.|.|+|++|+||+..+..|.+||||++++.+ .++||+++++++||+
T Consensus 2 ~ei~~sL~Y~--------------~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPv 67 (138)
T cd08408 2 PELLLGLEYN--------------ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPE 67 (138)
T ss_pred CeEEEEeEEc--------------CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCc
Confidence 7899999987 77899999999999999999999999999999953 256999999999999
Q ss_pred eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec
Q 005132 544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL 583 (713)
Q Consensus 544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l 583 (713)
|||+|.|++. ...|.|+|||++.++++++||++.+++...
T Consensus 68 fnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 68 FKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred EeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence 9999999984 568999999999999999999999988743
No 61
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.73 E-value=3.5e-17 Score=149.41 Aligned_cols=112 Identities=24% Similarity=0.377 Sum_probs=94.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCC-CCe
Q 005132 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTL-NPQ 543 (713)
Q Consensus 470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~-nP~ 543 (713)
.+|.++++|. +..+.|+|.|++|+||++.+..+.+||||+|++.. .++||+++++|+ ||+
T Consensus 1 ~el~~sL~Y~--------------p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~ 66 (135)
T cd08692 1 AELQLGTCFQ--------------AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVK 66 (135)
T ss_pred CeEEEEeeec--------------CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCce
Confidence 3789999998 78899999999999999886677789999999842 478999999996 699
Q ss_pred eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEceecC-------------CCCceeeEEEc
Q 005132 544 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLP-------------PNQMADKWIPL 595 (713)
Q Consensus 544 wne~~~f~v~----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~-------------~~~~~~~w~~L 595 (713)
|||+|.|++. ...|.++|||++..+++++||++.++.+... ++.+..+|+.|
T Consensus 67 fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L 135 (135)
T cd08692 67 WGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL 135 (135)
T ss_pred ecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence 9999999984 4578999999999999999999999986431 34566777765
No 62
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.73 E-value=3.5e-17 Score=152.18 Aligned_cols=99 Identities=27% Similarity=0.449 Sum_probs=88.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee
Q 005132 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 544 (713)
Q Consensus 470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 544 (713)
|+|.++++|. +..+.|+|+|++|++|+..+..|.+||||++++.+ .+++|+++++|+||+|
T Consensus 1 G~i~~~l~y~--------------~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~w 66 (135)
T cd08410 1 GELLLSLNYL--------------PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFY 66 (135)
T ss_pred CcEEEEEEEC--------------CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCcc
Confidence 8999999998 67799999999999999999899999999999832 3579999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEcee
Q 005132 545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQR 582 (713)
Q Consensus 545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~ 582 (713)
||+|.|.+. ...|.|+|||+|..+++++||++.|....
T Consensus 67 nE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~ 109 (135)
T cd08410 67 NESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYS 109 (135)
T ss_pred ceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCcc
Confidence 999999983 34699999999999999999999876543
No 63
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.73 E-value=5.9e-17 Score=150.23 Aligned_cols=112 Identities=28% Similarity=0.480 Sum_probs=101.3
Q ss_pred CceEEEEEEEccCcccccc----------CCCCCcEEEEEECCeE-EEEEeeeCCCCCeeeeEEEEec-CCCeEEEEEEE
Q 005132 496 NGWIELVIVEARDLVAADL----------RGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPD-DGSPLTLHVRD 563 (713)
Q Consensus 496 ~~~L~v~v~~a~~L~~~d~----------~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v-~~~~l~i~V~D 563 (713)
.|.|+|+|++|++|...+. .|.+||||++.+++++ .+|+++++|+||.|||+|.|.+ ....|.|.|||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d 82 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHNGRNLELTVFH 82 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCCCCEEEEEEEe
Confidence 4789999999999998875 3689999999999865 6999999999999999999999 46789999999
Q ss_pred CCCCCCCCeeEEEEEEceecCC--CCceeeEEEcCCCCCcEEEEEEEE
Q 005132 564 HNALLASSSIGDCVVEYQRLPP--NQMADKWIPLQGVRKGEIHVLITR 609 (713)
Q Consensus 564 ~d~~~~d~~iG~~~i~L~~l~~--~~~~~~w~~L~~~~~G~i~~~l~~ 609 (713)
++.++++++||++.++|+++.. +.....|++|. +.|+|++.+++
T Consensus 83 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~ 128 (132)
T cd04014 83 DAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIEL 128 (132)
T ss_pred CCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEE
Confidence 9999999999999999999876 56789999998 67999999998
No 64
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.72 E-value=8.3e-17 Score=149.53 Aligned_cols=114 Identities=23% Similarity=0.474 Sum_probs=102.8
Q ss_pred ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCce
Q 005132 365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN 441 (713)
Q Consensus 365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~ 441 (713)
.|.|.|+|++|++|+..+..|.+||||++++++..++|+++ ++.||.|||+|.|.+.+. ...|.|+|||++.. +|++
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~ 93 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDF 93 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCe
Confidence 37999999999999999889999999999999999999999 999999999999998764 67899999999987 7899
Q ss_pred eEEEEEecccccc-----CCeeeeeeeceecccceEEEEEEE
Q 005132 442 MGSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEA 478 (713)
Q Consensus 442 lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~I~l~l~~ 478 (713)
||.+.+++.++.. ......|..+.+...|+|++++.+
T Consensus 94 lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 94 LGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred eEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 9999999999886 334567888888888999999875
No 65
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=6.2e-17 Score=148.30 Aligned_cols=115 Identities=31% Similarity=0.407 Sum_probs=99.6
Q ss_pred ceEEEEEEEccCccccc-cCCCCCcEEEEEECC--eEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCC
Q 005132 497 GWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASS 571 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~--~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~ 571 (713)
|.|+|+|++|++|+..+ ..+.+||||++.+++ ..++|+++.++.||.|||.|.|.+. ...|.|+|||++..++|+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~ 81 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK 81 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence 78999999999999655 457799999999988 7899999999999999999999974 678999999999999999
Q ss_pred eeEEEEEEceecCCCCcee-eEEEc--CCCCCcEEEEEEEEEec
Q 005132 572 SIGDCVVEYQRLPPNQMAD-KWIPL--QGVRKGEIHVLITRKVP 612 (713)
Q Consensus 572 ~iG~~~i~L~~l~~~~~~~-~w~~L--~~~~~G~i~~~l~~~~p 612 (713)
+||++.++|.++....... .|+.+ .++..|+|+++++| .|
T Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~-~p 124 (124)
T cd04044 82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRF-FP 124 (124)
T ss_pred eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEe-CC
Confidence 9999999999997665554 44544 35678999999998 54
No 66
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.72 E-value=5.9e-17 Score=151.02 Aligned_cols=101 Identities=35% Similarity=0.477 Sum_probs=91.1
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC--C---eEEEEEeeeCCCCCe
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D---LKKRTKVIFKTLNPQ 543 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~v~~~t~nP~ 543 (713)
.|+|.++++|. +..+.|.|+|++|+||+..+..|.+||||++++. + .+++|+++++++||+
T Consensus 1 ~G~l~~sl~y~--------------~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (136)
T cd08405 1 RGELLLSLCYN--------------PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV 66 (136)
T ss_pred CcEEEEEEEEc--------------CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCc
Confidence 49999999998 6779999999999999999889999999999983 2 357899999999999
Q ss_pred eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec
Q 005132 544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL 583 (713)
Q Consensus 544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l 583 (713)
|||+|.|.+. ...|.|+|||++.+++|++||++.+++...
T Consensus 67 wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 67 FNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 9999999974 467999999999999999999999999864
No 67
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.72 E-value=3.4e-17 Score=145.47 Aligned_cols=98 Identities=23% Similarity=0.398 Sum_probs=88.8
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 574 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG 574 (713)
.|.|+|++|++|+..+..+.+||||++++++++++|+++++|.||+|||+|.|.+. ...|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 47899999999999998999999999999999999999999999999999999985 4679999999986 78999
Q ss_pred EEEEEceecCCC--CceeeEEEcCCC
Q 005132 575 DCVVEYQRLPPN--QMADKWIPLQGV 598 (713)
Q Consensus 575 ~~~i~L~~l~~~--~~~~~w~~L~~~ 598 (713)
++.++|.++... ....+||+|.+.
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCCC
Confidence 999999998644 368999999853
No 68
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=3.3e-17 Score=153.99 Aligned_cols=105 Identities=23% Similarity=0.434 Sum_probs=92.4
Q ss_pred eEEEEEEEccCccccccC--------------CCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC----CCeEEE
Q 005132 498 WIELVIVEARDLVAADLR--------------GTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----GSPLTL 559 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~--------------g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i 559 (713)
.|.|+|++|++|+++|.. +.+||||+|.+++++.+|+++++++||+|||+|.|++. ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999998854 37899999999999999999999999999999999862 468999
Q ss_pred EEEECCCCCCCCeeEEEEEEceecCCCCc-------eeeEEEcCCCCCcE
Q 005132 560 HVRDHNALLASSSIGDCVVEYQRLPPNQM-------ADKWIPLQGVRKGE 602 (713)
Q Consensus 560 ~V~D~d~~~~d~~iG~~~i~L~~l~~~~~-------~~~w~~L~~~~~G~ 602 (713)
+|||+|..++|++||++.+++.++..... ...|+.|.+.++|.
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 99999999999999999999998865432 36899999887775
No 69
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.72 E-value=2.2e-17 Score=153.94 Aligned_cols=112 Identities=28% Similarity=0.394 Sum_probs=97.7
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 543 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 543 (713)
.|+|.++++|. +..+.|.|+|++|+||+..+..|.+||||++++.+ .+++|+++++|+||.
T Consensus 1 ~G~l~~~l~y~--------------~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~ 66 (136)
T cd08404 1 RGELLLSLCYQ--------------PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPV 66 (136)
T ss_pred CCeEEEEEEEe--------------CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCc
Confidence 49999999997 56789999999999999999999999999999943 257899999999999
Q ss_pred eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
|||+|.|.+. ...|.|+|||+|.++++++||++.+++.. .+.....|++|.
T Consensus 67 w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 67 FNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred cCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 9999999984 45789999999999999999999999987 344566777764
No 70
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.72 E-value=3e-17 Score=147.06 Aligned_cols=99 Identities=30% Similarity=0.583 Sum_probs=89.9
Q ss_pred EEEEEEEccCcccccc-CCCCCcEEEEEECCeEEEEEeeeCCCCCee-eeEEEEecC-----CCeEEEEEEECCCCCCCC
Q 005132 499 IELVIVEARDLVAADL-RGTSDPYVKVQYGDLKKRTKVIFKTLNPQW-HQTLEFPDD-----GSPLTLHVRDHNALLASS 571 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~v~~~t~nP~w-ne~~~f~v~-----~~~l~i~V~D~d~~~~d~ 571 (713)
|.|+|++|++|+..+. .|.+||||++++++.+++|+++++++||.| ||+|.|.+. ...|.|+|||++.+++|+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999999884 789999999999999999999999999999 999999985 368999999999999999
Q ss_pred eeEEEEEEceecCC---CCceeeEEEcCC
Q 005132 572 SIGDCVVEYQRLPP---NQMADKWIPLQG 597 (713)
Q Consensus 572 ~iG~~~i~L~~l~~---~~~~~~w~~L~~ 597 (713)
+||++.+++.++.. +.....||+|..
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999965 456899999864
No 71
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.71 E-value=9.2e-17 Score=149.34 Aligned_cols=98 Identities=37% Similarity=0.488 Sum_probs=89.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee
Q 005132 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 544 (713)
Q Consensus 470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 544 (713)
|+|.+++.|. +..+.|+|+|++|++|++.+..|.+||||++++.. .+++|+++++++||.|
T Consensus 1 g~l~~~~~y~--------------~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~w 66 (134)
T cd08403 1 GELMFSLCYL--------------PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTY 66 (134)
T ss_pred CeEEEEEEEc--------------CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcc
Confidence 8899999998 67899999999999999999999999999999842 3679999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEce
Q 005132 545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQ 581 (713)
Q Consensus 545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~ 581 (713)
||+|.|.+. ...|.|+|||++.++++++||++.+++.
T Consensus 67 ne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 67 NEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred cceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence 999999874 3469999999999999999999999977
No 72
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.71 E-value=7.6e-17 Score=149.32 Aligned_cols=118 Identities=31% Similarity=0.484 Sum_probs=105.9
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 543 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 543 (713)
+|+|+|++.|. .+.|+|+|++|++|+..+..+.+||||+|.+.+ ..++|++++++.||.
T Consensus 1 ~g~~~~~~~~~----------------~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~ 64 (131)
T cd04026 1 RGRIYLKISVK----------------DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPV 64 (131)
T ss_pred CcEEEEEEEEC----------------CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCC
Confidence 48999999887 288999999999999988888999999999963 578999999999999
Q ss_pred eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCCCcEE
Q 005132 544 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEI 603 (713)
Q Consensus 544 wne~~~f~v~----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i 603 (713)
|||+|.|.+. ...|.++|||++..+++++||++.++|+++... ....||+|.+...|+.
T Consensus 65 wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 65 WNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred ccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 9999999984 357999999999999999999999999999754 7789999998888864
No 73
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1.3e-16 Score=146.89 Aligned_cols=109 Identities=28% Similarity=0.453 Sum_probs=98.0
Q ss_pred EEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEE
Q 005132 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCV 577 (713)
Q Consensus 503 v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~ 577 (713)
|++|++|+. ..|.+||||++++++.+++|++++++.||+|||+|.|++. ...|.|+|||++..++|++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 688999998 6789999999999999999999999999999999999983 578999999999999999999999
Q ss_pred EEceecCCCCceeeEEEcCCC----CCcEEEEEEEEEecCC
Q 005132 578 VEYQRLPPNQMADKWIPLQGV----RKGEIHVLITRKVPEL 614 (713)
Q Consensus 578 i~L~~l~~~~~~~~w~~L~~~----~~G~i~~~l~~~~p~~ 614 (713)
++++++..+.....|++|... .+|+|+++++| .|..
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~-~~~~ 119 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSY-QPPD 119 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEE-eCCC
Confidence 999999988889999999632 35999999999 5543
No 74
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.71 E-value=9.9e-17 Score=145.90 Aligned_cols=111 Identities=23% Similarity=0.337 Sum_probs=100.8
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEC---CeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCCCCcee
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM 442 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~---~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~l 442 (713)
|.|+|++|++|+..+..+.+||||+++++ ...++|+++ ++.||.|||+|.|.+... ...|.|+|||++..+|++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 78999999999988888999999999995 467899999 999999999999998764 5679999999988788999
Q ss_pred EEEEEeccccccCCeeeeeeeceecccceEEEEEEE
Q 005132 443 GSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 478 (713)
Q Consensus 443 G~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~l~l~~ 478 (713)
|++.+++.++..+.....|++|...+.|++++++..
T Consensus 82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 999999999998888999999999889999998865
No 75
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.71 E-value=3.3e-17 Score=152.64 Aligned_cols=100 Identities=21% Similarity=0.332 Sum_probs=89.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee
Q 005132 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 544 (713)
Q Consensus 470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 544 (713)
|+|.+++.|. +..+.|.|+|++|+||++.+ .+.+||||++++.+ .+++|+++++++||+|
T Consensus 2 G~i~~sl~y~--------------~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~f 66 (137)
T cd08409 2 GDIQISLTYN--------------PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSF 66 (137)
T ss_pred cEEEEEEEEC--------------CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcc
Confidence 8999999998 67799999999999999988 78899999999854 3679999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecC
Q 005132 545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLP 584 (713)
Q Consensus 545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~ 584 (713)
||+|.|.++ ...|.|+|||++..+++++||++.++.....
T Consensus 67 nE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 67 NESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred cceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccC
Confidence 999999984 4689999999999999999999999865443
No 76
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.71 E-value=9e-17 Score=148.14 Aligned_cols=113 Identities=31% Similarity=0.517 Sum_probs=101.4
Q ss_pred cEEEEEEEEeEcCCCCCC--CCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC-CCceEEEEEEEecCC-CCc
Q 005132 366 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDE 440 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~--~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~-~d~ 440 (713)
|.|.|+|++|++|+..+. .+.+||||++++++..++|+++ ++.||.|||.|.|.+.. ....|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 589999999999998887 8899999999999999999999 99999999999999887 478999999999988 899
Q ss_pred eeEEEEEecccccc---CCeeeeeeeceec-------ccceEEEEEEE
Q 005132 441 NMGSARVNLEGLVE---GSVRDIWVPLEKV-------NTGELRLQIEA 478 (713)
Q Consensus 441 ~lG~~~i~l~~l~~---~~~~~~w~~L~~~-------~~G~I~l~l~~ 478 (713)
+||.+.+++.++.. ......||+|.+. .+|+|++++.|
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999999873 3346789999865 37999999876
No 77
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.71 E-value=9e-17 Score=147.94 Aligned_cols=113 Identities=34% Similarity=0.484 Sum_probs=100.2
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC----CceEEEEEEEecCC--CC
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEEIF--GD 439 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~~~~--~d 439 (713)
.|.|+|++|++|+..+..|.+||||+++++++.++|+++ ++.||.|||.|.|.+..+ ...|.|+|||++.. ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 389999999999998888999999999999999999999 999999999999998753 35899999998876 68
Q ss_pred ceeEEEEEeccccc-cCCeeeeeeeceec-----ccceEEEEEEEE
Q 005132 440 ENMGSARVNLEGLV-EGSVRDIWVPLEKV-----NTGELRLQIEAT 479 (713)
Q Consensus 440 ~~lG~~~i~l~~l~-~~~~~~~w~~L~~~-----~~G~I~l~l~~~ 479 (713)
++||++.++++++. .+.....||+|+.. .+|+|.|++.+.
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999998 45667899999874 379999998764
No 78
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.71 E-value=3.1e-17 Score=151.46 Aligned_cols=90 Identities=17% Similarity=0.381 Sum_probs=83.2
Q ss_pred cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCcE-EEEeecCCCCCCcccceEEEEEec
Q 005132 173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDARPGSDPRWDSMFNMVLHE 251 (713)
Q Consensus 173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~~-~~tt~i~~~~nP~WnEtf~~~v~~ 251 (713)
|.|+|+|++|.+|..+|+.+++ ||||.+++|.+ .+|+++++++||+|||+|.|.+.+
T Consensus 6 GLL~v~v~~g~~L~~rD~~~sS----------------------DPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d 63 (168)
T KOG1030|consen 6 GLLRVRVKRGKNLAIRDFLGSS----------------------DPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKD 63 (168)
T ss_pred eEEEEEEEeecCeeeeccccCC----------------------CCeEEEEECCeeeeeeeecCCCCCcccceEEEEecC
Confidence 9999999999999999987765 99999999865 466678999999999999999999
Q ss_pred CCceEEEEEEEeCCCCCccceeEEEEEEcccccC
Q 005132 252 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 285 (713)
Q Consensus 252 ~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~ 285 (713)
.+..|++.|||+|. +.+||++|.|+|+|+.+..
T Consensus 64 ~~~~lkv~VyD~D~-fs~dD~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 64 PNTPLKVTVYDKDT-FSSDDFMGEATIPLKPLLE 96 (168)
T ss_pred CCceEEEEEEeCCC-CCcccccceeeeccHHHHH
Confidence 99999999999999 5899999999999999885
No 79
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.71 E-value=2e-16 Score=145.32 Aligned_cols=111 Identities=24% Similarity=0.354 Sum_probs=97.7
Q ss_pred CceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCee
Q 005132 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSI 573 (713)
Q Consensus 496 ~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~i 573 (713)
...++|+|++|++|...+..|.+||||++.+++++++|+++++|.||+|||.|.|.+. ...|.|+|||++.. +|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence 5789999999999999998999999999999999999999999999999999999863 56899999999987 48999
Q ss_pred EEEEEEceecCCCCceeeEEEcC-------CCCCcEEEEEEEE
Q 005132 574 GDCVVEYQRLPPNQMADKWIPLQ-------GVRKGEIHVLITR 609 (713)
Q Consensus 574 G~~~i~L~~l~~~~~~~~w~~L~-------~~~~G~i~~~l~~ 609 (713)
|++.+++..+. ....+|++|. +...|+|.+++++
T Consensus 81 G~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 81 GQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred EEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 99999998754 3456888884 3456999999987
No 80
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.71 E-value=1.2e-16 Score=150.88 Aligned_cols=113 Identities=27% Similarity=0.436 Sum_probs=99.9
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-C-CCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCcee
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENM 442 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~-t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~l 442 (713)
.|.|+|++|++|+..+..|.+||||+++++++.++|+++ + +.||+|||.|+|.+.++ ...+.|+|+|++.. +|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 389999999999999999999999999999999999999 6 69999999999998765 56999999999887 89999
Q ss_pred EEEEEeccccccC----Ceeeeeeeceecc-----------cceEEEEEEEE
Q 005132 443 GSARVNLEGLVEG----SVRDIWVPLEKVN-----------TGELRLQIEAT 479 (713)
Q Consensus 443 G~~~i~l~~l~~~----~~~~~w~~L~~~~-----------~G~I~l~l~~~ 479 (713)
|.+.++|.++..+ .....||+|.+.. .|+|+|++.+.
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 9999999998743 3468999998643 38999999886
No 81
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.70 E-value=1.4e-16 Score=147.84 Aligned_cols=110 Identities=22% Similarity=0.327 Sum_probs=95.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeee
Q 005132 471 ELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWH 545 (713)
Q Consensus 471 ~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wn 545 (713)
+|.+++.|. +..+.|.|+|++|++|++.+..|.+||||++++.+ .+.+|+++++|+||+||
T Consensus 1 ~i~~~l~y~--------------~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wn 66 (133)
T cd08384 1 KILVSLMYN--------------TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFN 66 (133)
T ss_pred CEEEEEEEc--------------CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcc
Confidence 478888887 67799999999999999999889999999999953 36799999999999999
Q ss_pred eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 546 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 546 e~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
|+|.|.+. ...|.|+|||+|..++|++||++.+++.. .++...+|+++.
T Consensus 67 e~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l 120 (133)
T cd08384 67 EEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCL 120 (133)
T ss_pred cEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHH
Confidence 99999984 46899999999999999999999999985 334456777664
No 82
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.70 E-value=1.2e-16 Score=146.23 Aligned_cols=110 Identities=22% Similarity=0.365 Sum_probs=94.9
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEEC-CeEEEEEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCC--CCee
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYG-DLKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA--SSSI 573 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-~~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~d~~~~--d~~i 573 (713)
.|+|+|++|++|+..+..+.+||||+++++ .+.++|+++++++||.|||+|.|++. ...|.++|||++.+++ |++|
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCCCCCCCceE
Confidence 378999999999999988999999999996 57889999999999999999999984 6789999999999875 5899
Q ss_pred EEEEEEceecCCCC-ceeeEEEcCCC-------CCcEEEEEE
Q 005132 574 GDCVVEYQRLPPNQ-MADKWIPLQGV-------RKGEIHVLI 607 (713)
Q Consensus 574 G~~~i~L~~l~~~~-~~~~w~~L~~~-------~~G~i~~~l 607 (713)
|++.+++.++.... ....|++|... ..|+|.+++
T Consensus 81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999986443 45789999532 258888775
No 83
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.70 E-value=2.2e-16 Score=145.11 Aligned_cols=110 Identities=23% Similarity=0.373 Sum_probs=97.5
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCC
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASS 571 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~ 571 (713)
.|+|+|++|++|+..+..+.+||||++.+.+ ...+|+++++++||.|||+|.|.+. ...|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5889999999999999999999999999864 3679999999999999999999985 368999999999998999
Q ss_pred eeEEEEEEceecCC---CCceeeEEEcCCCCCcEEEEEEEE
Q 005132 572 SIGDCVVEYQRLPP---NQMADKWIPLQGVRKGEIHVLITR 609 (713)
Q Consensus 572 ~iG~~~i~L~~l~~---~~~~~~w~~L~~~~~G~i~~~l~~ 609 (713)
+||++.++|+.+.. +.....|++|.+ .|+|++.+++
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~ 120 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSM 120 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEE
Confidence 99999999987532 446789999974 7999999988
No 84
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.70 E-value=1.6e-16 Score=144.69 Aligned_cols=110 Identities=23% Similarity=0.407 Sum_probs=97.7
Q ss_pred EEEEEEEeEcCCCCC-CCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeE
Q 005132 368 INVTVVEGKDLMPKD-KSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 443 (713)
Q Consensus 368 L~V~I~~a~~L~~~~-~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG 443 (713)
|.|+|.+|+||+..+ ..|.+||||+|.++++ .++|+++ ++.||.|||+|.|.+......|.|.|||++.+ +|++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 689999999998864 4578999999999765 7899999 99999999999999887678999999999988 899999
Q ss_pred EEEEeccccccCCeeeeeeeceecc-----cceEEEEEE
Q 005132 444 SARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIE 477 (713)
Q Consensus 444 ~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~ 477 (713)
.+.++++++..+...+.||+|+... .|+|++++.
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 9999999998877788999998632 699999875
No 85
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=1.8e-16 Score=142.28 Aligned_cols=99 Identities=27% Similarity=0.371 Sum_probs=88.8
Q ss_pred CCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC-------CCeEEEEEEECCCC
Q 005132 495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-------GSPLTLHVRDHNAL 567 (713)
Q Consensus 495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~-------~~~l~i~V~D~d~~ 567 (713)
..+.|+|+|++|++|+ .|.+||||++++++++++|+++++++||.|||+|.|.+. ...|.|+|||++.+
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4578999999999998 578999999999999999999999999999999999963 36799999999999
Q ss_pred CCCCeeEEEEEEceecCCC---CceeeEEEcCC
Q 005132 568 LASSSIGDCVVEYQRLPPN---QMADKWIPLQG 597 (713)
Q Consensus 568 ~~d~~iG~~~i~L~~l~~~---~~~~~w~~L~~ 597 (713)
++|++||++.++|+++..+ .....|++|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9999999999999999544 45789999864
No 86
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.70 E-value=1e-16 Score=148.74 Aligned_cols=102 Identities=28% Similarity=0.422 Sum_probs=92.9
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC-------CeEEEEEeeeCCCC
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-------DLKKRTKVIFKTLN 541 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~v~~~t~n 541 (713)
.|+|.++++|. .....|+|+|++|++|+..+..|.+||||+|++. ..+++|+++++|+|
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~n 67 (133)
T cd04009 2 YGVLTVKAYYR--------------ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLF 67 (133)
T ss_pred ceEEEEEEEEc--------------CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCC
Confidence 59999999997 5678999999999999999888999999999995 24789999999999
Q ss_pred CeeeeEEEEecC-------CCeEEEEEEECCCCCCCCeeEEEEEEceecC
Q 005132 542 PQWHQTLEFPDD-------GSPLTLHVRDHNALLASSSIGDCVVEYQRLP 584 (713)
Q Consensus 542 P~wne~~~f~v~-------~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~ 584 (713)
|+|||+|.|++. ...|.|+|||++.+++|++||++.++|+++.
T Consensus 68 P~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 68 PLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred CccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence 999999999973 3589999999999999999999999999885
No 87
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.70 E-value=1e-16 Score=142.68 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=80.6
Q ss_pred ceEEEEEEEccCcccccc----CCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC----CCeEEEEEEECCCCC
Q 005132 497 GWIELVIVEARDLVAADL----RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLHVRDHNALL 568 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~----~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i~V~D~d~~~ 568 (713)
|.|.|+|++|++|++.+. .+.+||||++++++.++||+++++|+||+|||+|.|.+. ...|.|+|||+|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 679999999999998763 235899999999999999999999999999999999973 347999999999999
Q ss_pred CCCeeEEEEEEceecCCC
Q 005132 569 ASSSIGDCVVEYQRLPPN 586 (713)
Q Consensus 569 ~d~~iG~~~i~L~~l~~~ 586 (713)
+|++||++.++|+++..+
T Consensus 81 ~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 81 FNDYVATGSLSVQELLNA 98 (108)
T ss_pred CCcceEEEEEEHHHHHhh
Confidence 999999999999998644
No 88
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.69 E-value=2.7e-16 Score=144.72 Aligned_cols=108 Identities=35% Similarity=0.570 Sum_probs=94.5
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCC--------
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL-------- 567 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~-------- 567 (713)
.|+|+|++|++|+..+..|.+||||++++++..++|+++++|+||.|||+|.|.+. ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 68999999999999998899999999999999999999999999999999999873 56899999999853
Q ss_pred ---CCCCeeEEEEEEceecCCCCceeeEEEcCC-----CCCcEEEEEE
Q 005132 568 ---LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLI 607 (713)
Q Consensus 568 ---~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~-----~~~G~i~~~l 607 (713)
+.+++||++.+++.++.. ...+||+|.. ..+|+|++++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 468999999999998753 3579999974 2368988764
No 89
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.69 E-value=2.8e-16 Score=143.32 Aligned_cols=98 Identities=23% Similarity=0.367 Sum_probs=88.1
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEec
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE 435 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~ 435 (713)
+.|.|+|++|+||+..+ .+.+||||++++. ..++||+++ ++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 48999999999999999 8999999999994 347899999 99999999999998722 3679999999999
Q ss_pred CC-CCceeEEEEEeccccccCCeeeeeeec
Q 005132 436 IF-GDENMGSARVNLEGLVEGSVRDIWVPL 464 (713)
Q Consensus 436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L 464 (713)
.+ ++++||++.++|.++..+.....||+|
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 88 799999999999999887778899987
No 90
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.69 E-value=8.1e-17 Score=144.53 Aligned_cols=97 Identities=29% Similarity=0.497 Sum_probs=86.7
Q ss_pred ceEEEEEEEccCccccccC-CCCCcEEEEEECC---eEEEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCC
Q 005132 497 GWIELVIVEARDLVAADLR-GTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNA 566 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~d~ 566 (713)
|.|+|+|++|++|+..+.. +.+||||+|++.+ ..++|+++++|+||+|||+|.|.+. ...|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 8999999999943 4689999999999999999999863 3689999999999
Q ss_pred CCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 567 LLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 567 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
+++|++||++.+++.++. ....|++++
T Consensus 81 ~~~dd~lG~~~i~l~~l~---~~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELI---EDRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence 999999999999999997 346888875
No 91
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.69 E-value=4.4e-16 Score=146.36 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=97.2
Q ss_pred EEEEEEccC--ccccccCCCCCcEEEEEE-----CCeEEEEEeeeCCCCCeeeeEEEEecCC-----------CeEEEEE
Q 005132 500 ELVIVEARD--LVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEFPDDG-----------SPLTLHV 561 (713)
Q Consensus 500 ~v~v~~a~~--L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP~wne~~~f~v~~-----------~~l~i~V 561 (713)
.++|..|++ |++.+..+.+||||++++ ..++.||+++++|+||+|||+|.|.+.. ..|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 445555555 788888889999999997 2358899999999999999999999843 4699999
Q ss_pred EECCCC-CCCCeeEEEEEEceecCCCCceeeEEEcC-C--CCCcEEEEEEEEEecCCcc
Q 005132 562 RDHNAL-LASSSIGDCVVEYQRLPPNQMADKWIPLQ-G--VRKGEIHVLITRKVPELDK 616 (713)
Q Consensus 562 ~D~d~~-~~d~~iG~~~i~L~~l~~~~~~~~w~~L~-~--~~~G~i~~~l~~~~p~~~~ 616 (713)
||++.+ .+|++||++.++|+.+..+.....|++|. + ..+|.|++++..+.|-...
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~~ 143 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREPLTGK 143 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCCCccc
Confidence 999987 47999999999999998887778899986 3 3469999999997765443
No 92
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=3.5e-16 Score=140.76 Aligned_cols=104 Identities=16% Similarity=0.332 Sum_probs=87.3
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 574 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG 574 (713)
+.|.|+|++|++|+..+ ..||||++.+++++.+|++.++ .||.|||+|.|.+. ...|.|+|||+|.+ +|++||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 57999999999997654 4599999999999999999988 49999999999984 45699999999965 899999
Q ss_pred EEEEEceecCCCCce--eeEEEcCC---CCCcEEEE
Q 005132 575 DCVVEYQRLPPNQMA--DKWIPLQG---VRKGEIHV 605 (713)
Q Consensus 575 ~~~i~L~~l~~~~~~--~~w~~L~~---~~~G~i~~ 605 (713)
++.|+|.++..+... .+||+|.. ...|++.-
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~ 112 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVG 112 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecChHHhccCCeEec
Confidence 999999999755444 89999984 23465543
No 93
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.68 E-value=1.8e-17 Score=170.90 Aligned_cols=117 Identities=31% Similarity=0.482 Sum_probs=105.0
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 543 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 543 (713)
+|+|++.+... ...|.|.|.+|+||.++|.+|.|||||++.+-. .+++|++++.|+||+
T Consensus 168 RGrl~l~~~~~----------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~ 231 (683)
T KOG0696|consen 168 RGRLYLEAHIK----------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPV 231 (683)
T ss_pred cceEEEEEEec----------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCcc
Confidence 69999998765 578999999999999999999999999999943 478999999999999
Q ss_pred eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCCCcE
Q 005132 544 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 602 (713)
Q Consensus 544 wne~~~f~v~----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~ 602 (713)
|||+|.|... ...|.|+|||||+.++++|+|...+.+++|... +...||.|-+...||
T Consensus 232 wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 232 WNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEGE 293 (683)
T ss_pred ccceeEEecccccccceeEEEEecccccccccccceecccHHHHhhc-chhhHHHHhhhhcCc
Confidence 9999999973 678999999999999999999999999999754 678999998777676
No 94
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.68 E-value=2.6e-16 Score=140.13 Aligned_cols=96 Identities=15% Similarity=0.231 Sum_probs=78.5
Q ss_pred cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC-cEEEEeecCCCCCCcccceEEEEEec
Q 005132 173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMVLHE 251 (713)
Q Consensus 173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g-~~~~tt~i~~~~nP~WnEtf~~~v~~ 251 (713)
|+|+|+|++|++|+..+..+.. +..+||||+|+++ ...||++++++.||+|||+|.|.+.+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~------------------~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~ 62 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRT------------------GFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYP 62 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCC------------------CCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeC
Confidence 8999999999999987632100 1124999999996 55677778999999999999999865
Q ss_pred C--CceEEEEEEEeCCCCCccceeEEEEEEcccccCCc
Q 005132 252 E--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 287 (713)
Q Consensus 252 ~--~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~ 287 (713)
. ...|.|+|||+|.. ++||+||++.++|++|..+.
T Consensus 63 ~~~~~~L~~~V~D~d~~-~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 63 HEKNFDIQFKVLDKDKF-SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ccCCCEEEEEEEECCCC-CCCcceEEEEEEHHHHHhhC
Confidence 4 45899999999984 78999999999999998643
No 95
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.68 E-value=4.4e-16 Score=148.44 Aligned_cols=114 Identities=25% Similarity=0.449 Sum_probs=100.3
Q ss_pred cEEEEEEEEeEcCCCCC------------------------------CCCCCCcEEEEEECCe-EEeccCC-CCCCCccc
Q 005132 366 RKINVTVVEGKDLMPKD------------------------------KSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWN 413 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~------------------------------~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wn 413 (713)
|.|.|+|++|++|+.+| ..|.+||||+|.+++. ..+|+++ ++.||.||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 79999999999999876 3467899999999864 5799999 99999999
Q ss_pred eEEEEEEeCCCceEEEEEEEecCCCCceeEEEEEeccccccCCeeeeeeeceec------ccceEEEEEEEE
Q 005132 414 QKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEAT 479 (713)
Q Consensus 414 e~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~I~l~l~~~ 479 (713)
|+|.|.+......|.|.|||++..++++||.+.++++++..+...+.|++|.+. ..|+|+++++|.
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 999999877777899999999888789999999999999988888899999752 257999999873
No 96
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.68 E-value=1.9e-16 Score=147.11 Aligned_cols=115 Identities=29% Similarity=0.432 Sum_probs=101.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe-----EEEEEeeeCCCCCee
Q 005132 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-----KKRTKVIFKTLNPQW 544 (713)
Q Consensus 470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-----~~kT~v~~~t~nP~w 544 (713)
|+|.++++|. +..+.|.|.|++|+||+..+..+.+||||++++.+. +++|++++++.||.|
T Consensus 1 G~i~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~w 66 (134)
T cd00276 1 GELLLSLSYL--------------PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF 66 (134)
T ss_pred CeEEEEEEee--------------CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCee
Confidence 8899999998 667899999999999999988889999999999642 569999999999999
Q ss_pred eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCCC
Q 005132 545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK 600 (713)
Q Consensus 545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~ 600 (713)
||+|.|.+. ...|.|+|||++.++++++||++.+++++ .+...++|++|...++
T Consensus 67 ne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~ 125 (134)
T cd00276 67 NEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPR 125 (134)
T ss_pred eeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCC
Confidence 999999984 47899999999998999999999999998 5556788888865543
No 97
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.68 E-value=4.6e-16 Score=143.00 Aligned_cols=111 Identities=17% Similarity=0.316 Sum_probs=99.2
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEC--CeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeE
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYG--KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 443 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG 443 (713)
|.|+|++|++|+. ..|.+||||+++++ .+.++|+++ ++.||.|||.|.|.+......|.|+|||++.. ++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5799999999987 67899999999997 357899999 99999999999999866678899999999988 799999
Q ss_pred EEEEeccccccCCeeeeeeeceec------ccceEEEEEEEEe
Q 005132 444 SARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATR 480 (713)
Q Consensus 444 ~~~i~l~~l~~~~~~~~w~~L~~~------~~G~I~l~l~~~~ 480 (713)
++.+++.++........|++|... ..|+|.+++.|.+
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 999999999988877889999854 4799999999974
No 98
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.67 E-value=1e-15 Score=140.07 Aligned_cols=111 Identities=32% Similarity=0.460 Sum_probs=97.7
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee
Q 005132 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 544 (713)
Q Consensus 470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 544 (713)
|+|.+++.|. +..+.|+|+|++|++|++.+..+.+||||++.+.+ .+.+|+++++++||.|
T Consensus 2 G~~~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~W 67 (123)
T cd04035 2 GTLEFTLLYD--------------PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEF 67 (123)
T ss_pred cEEEEEEEEe--------------CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCc
Confidence 8999999998 66789999999999999988888999999999842 4689999999999999
Q ss_pred eeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEc
Q 005132 545 HQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 595 (713)
Q Consensus 545 ne~~~f~-v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L 595 (713)
||+|.|. +. ...|.++|||++.+ ++++||++.++|+++..++....|+.|
T Consensus 68 ne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 68 NETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred cceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 9999996 32 46899999999988 899999999999999877766666543
No 99
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.67 E-value=5.2e-16 Score=142.32 Aligned_cols=100 Identities=22% Similarity=0.390 Sum_probs=88.2
Q ss_pred cEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeC---CCceEEEEEEEec
Q 005132 366 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE 435 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~-g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~ 435 (713)
+.|.|+|++|+||++.+.. |.+||||++++. ..++||+++ ++.||+|||+|.|.+.. ....|.|+|||++
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~ 94 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRD 94 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCC
Confidence 4799999999999998875 899999999992 236899999 99999999999999764 2578999999999
Q ss_pred CC-CCceeEEEEEeccccccCCeeeeeeece
Q 005132 436 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE 465 (713)
Q Consensus 436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 465 (713)
.. ++++||++.++|.++..+.....||+|+
T Consensus 95 ~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 95 SLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 87 8899999999999998777778899874
No 100
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.67 E-value=5.4e-16 Score=137.72 Aligned_cols=98 Identities=22% Similarity=0.376 Sum_probs=89.9
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCCCCceeEEE
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSA 445 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~lG~~ 445 (713)
|.|+|++|++|+..+..+.+||||+++++++.++|+++ ++.||.|||+|.|.+..+ ...|.|+|+|++. +++||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~ 79 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL 79 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence 78999999999998888999999999999999999999 999999999999999874 6789999999886 8899999
Q ss_pred EEeccccccCC--eeeeeeeceec
Q 005132 446 RVNLEGLVEGS--VRDIWVPLEKV 467 (713)
Q Consensus 446 ~i~l~~l~~~~--~~~~w~~L~~~ 467 (713)
.+++.++.... ..+.||+|++.
T Consensus 80 ~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 80 TLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEHHHhhccccceeeeeEecCCC
Confidence 99999998654 57899999864
No 101
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.67 E-value=5.4e-16 Score=141.24 Aligned_cols=108 Identities=25% Similarity=0.408 Sum_probs=95.2
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC-CCceEEEEEEEecCCCCceeEE
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIFGDENMGS 444 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~~d~~lG~ 444 (713)
.|.|+|++|+||+.. .+||||++.+++...+|+++ ++.||.|||+|.|.+.. ....|.|+|||++..++++||.
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 388999999999876 68999999999999999999 99999999999999776 4788999999998878999999
Q ss_pred EEEeccccccCC-----eeeeeeeceecc----cceEEEEEEE
Q 005132 445 ARVNLEGLVEGS-----VRDIWVPLEKVN----TGELRLQIEA 478 (713)
Q Consensus 445 ~~i~l~~l~~~~-----~~~~w~~L~~~~----~G~I~l~l~~ 478 (713)
+.++++++.... ....||+|.... +|+|++++.|
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 999999987532 356899998754 5999999876
No 102
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.66 E-value=1.2e-15 Score=142.31 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=89.2
Q ss_pred cEEEEEEEEeEcCCCCC-CCCCCCcEEEEEE--CC---eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEE-EecCC
Q 005132 366 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY-NEEIF 437 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~-~~g~~dpyv~v~l--~~---~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~-d~~~~ 437 (713)
+.|.|+|++|+||+..+ ..|.+||||++++ ++ .++||+++ ++.||+|||+|.|.+......|.|+|| |++.+
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~ 108 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRM 108 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCC
Confidence 48999999999998764 5688999999999 32 37899999 999999999999998866889999999 56666
Q ss_pred -CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132 438 -GDENMGSARVNLEGLVEGSVRDIWVPLEKV 467 (713)
Q Consensus 438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 467 (713)
++++||.+.|+|+++..+.....||+|...
T Consensus 109 ~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 109 DKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 889999999999999777777899999863
No 103
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.66 E-value=1.2e-15 Score=140.02 Aligned_cols=112 Identities=26% Similarity=0.490 Sum_probs=96.2
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-EEeccCCCCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCcee
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTAHSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENM 442 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-~~kT~~~~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~l 442 (713)
..|.|+|++|+||+.+ +.+||||+|.+++. ..+|++.++.||.|||+|.|.+..+ ...+.|.|||++.. +|++|
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~i 80 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEI 80 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeE
Confidence 3799999999999874 47899999999874 5788866779999999999986554 36789999999888 89999
Q ss_pred EEEEEeccccccCCeeeeeeeceecc------cceEEEEEEEEe
Q 005132 443 GSARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATR 480 (713)
Q Consensus 443 G~~~i~l~~l~~~~~~~~w~~L~~~~------~G~I~l~l~~~~ 480 (713)
|.+.+++.++..+...+.|++|.+.. .|+|++++.|.+
T Consensus 81 G~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 81 AEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999998888888999997642 499999999973
No 104
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.66 E-value=1.1e-15 Score=140.11 Aligned_cols=100 Identities=21% Similarity=0.341 Sum_probs=88.1
Q ss_pred cEEEEEEEEeEcCCCCCC-CCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEec
Q 005132 366 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE 435 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~-~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~ 435 (713)
+.|.|+|++|+||+..+. .|.+||||++++. ...+||+++ ++.||.|||+|.|.+... ...|.|+|||++
T Consensus 15 ~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~ 94 (125)
T cd04029 15 QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYD 94 (125)
T ss_pred CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 589999999999988765 4789999999993 236899999 999999999999997652 568999999999
Q ss_pred CC-CCceeEEEEEeccccccCCeeeeeeece
Q 005132 436 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE 465 (713)
Q Consensus 436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 465 (713)
.. ++++||++.+++.++......+.|++|.
T Consensus 95 ~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 95 RFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 87 8899999999999998888889999984
No 105
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.66 E-value=1.3e-15 Score=139.61 Aligned_cols=100 Identities=23% Similarity=0.444 Sum_probs=90.5
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--C-CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF- 437 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~-~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~- 437 (713)
+.|.|+|++|++|+..+..|.+||||++++ + ...++|+++ ++.||.|||+|.|.+... ...|.|+|||++.+
T Consensus 16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~ 95 (124)
T cd08387 16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFS 95 (124)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCC
Confidence 589999999999999998999999999999 3 457999999 999999999999997653 56899999999888
Q ss_pred CCceeEEEEEeccccccCCeeeeeeece
Q 005132 438 GDENMGSARVNLEGLVEGSVRDIWVPLE 465 (713)
Q Consensus 438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 465 (713)
++++||.+.++++++..+...+.||+|+
T Consensus 96 ~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 96 RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCceeEEEEEecccccCCCCcceEEECc
Confidence 7999999999999998777889999986
No 106
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.65 E-value=2.4e-16 Score=177.20 Aligned_cols=358 Identities=16% Similarity=0.150 Sum_probs=227.5
Q ss_pred cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCc-EEEEeecCCCCCCcccceEEEEEec
Q 005132 173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDARPGSDPRWDSMFNMVLHE 251 (713)
Q Consensus 173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~-~~~tt~i~~~~nP~WnEtf~~~v~~ 251 (713)
--+++.|..|+.|...+..+-+ |||+.|.+-. ...|-++.+|+||.||++..|--.+
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~s----------------------dp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~e 263 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDES----------------------DPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVE 263 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCC----------------------CchhhhhcccccceeEeecCcCCCCccceeecccee
Confidence 5678889999999988866544 9999999954 4555557899999999998875211
Q ss_pred ----------CCceEEEEEEEeCCCCCccceeEEEEEEcccccCCccceeecCCCCccccccccccCCeeeeeeccC--C
Q 005132 252 ----------ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFE--G 319 (713)
Q Consensus 252 ----------~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 319 (713)
.--.+.|+|||.|+. .++|++|++.....-...-+ .-+| ++.- +
T Consensus 264 i~ge~~~~~~~ppi~v~e~yd~dr~-g~~ef~gr~~~~p~V~~~~p------------~lkw-----------~p~~rg~ 319 (1105)
T KOG1326|consen 264 IYGEAHLVLKNPPIRVFEVYDLDRS-GINEFKGRKKQRPYVMVQCP------------ALKW-----------VPTMRGA 319 (1105)
T ss_pred ecCccchhhcCCCeEEEEeehhhhh-chHHhhcccccceEEEecCC------------ccce-----------EEeeccc
Confidence 124789999999994 79999999875443222100 0112 1111 1
Q ss_pred cceeeEEEEEEEeeeccCCCCCCCCCCcCCCCcccccCCCc--CcCCccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC
Q 005132 320 VNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNF--ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK 397 (713)
Q Consensus 320 ~~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~ 397 (713)
...|++.++..+ +..+. +...........++.-|.. +..+.+.+.|-...-+|+...+......|-+.+.+|+
T Consensus 320 ~l~gd~l~a~el----iq~~~-~i~~p~~~~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~ 394 (1105)
T KOG1326|consen 320 FLDGDVLIAAEL----IQIGK-PIPQPPPQREIIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGG 394 (1105)
T ss_pred ccccchhHHHHH----HhhcC-CCCCCCcccccceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCC
Confidence 123443322100 00000 0000000111112222211 0112245555556667776666667788999999999
Q ss_pred eEEeccCC--CCCCCccceEEEEEEeC-C-----CceEEEEEEEecCC-CCceeEEEEEe-ccccccCCe----------
Q 005132 398 IVQRTRTA--HSPNHVWNQKFELDEIG-G-----GECLMVKCYNEEIF-GDENMGSARVN-LEGLVEGSV---------- 457 (713)
Q Consensus 398 ~~~kT~~~--~t~nP~wne~f~f~v~~-~-----~~~l~i~V~d~~~~-~d~~lG~~~i~-l~~l~~~~~---------- 457 (713)
+..++-.+ .-.||.|+..+.+.... + ...+.++|.|.+.+ .....|.|.++ +..++....
T Consensus 395 e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~ 474 (1105)
T KOG1326|consen 395 ERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFA 474 (1105)
T ss_pred ceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCC
Confidence 88888777 77899999777655322 2 45889999999888 77888988875 333321110
Q ss_pred ------------------eeeeeecee-----------------cc-----------cceEEEEEEEEeecC--------
Q 005132 458 ------------------RDIWVPLEK-----------------VN-----------TGELRLQIEATRVDD-------- 483 (713)
Q Consensus 458 ------------------~~~w~~L~~-----------------~~-----------~G~I~l~l~~~~~~~-------- 483 (713)
...|++... .. ++..++.+.......
T Consensus 475 ~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~ 554 (1105)
T KOG1326|consen 475 SDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQ 554 (1105)
T ss_pred CCchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhh
Confidence 011111110 00 112333333221100
Q ss_pred ------------C--C-----------------------CCC--------CCCCCCCCceEEEEEEEccCccccccCCCC
Q 005132 484 ------------N--E-----------------------GSR--------GQNIGSGNGWIELVIVEARDLVAADLRGTS 518 (713)
Q Consensus 484 ------------~--~-----------------------~~~--------~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~ 518 (713)
. + ..+ -+...+....++|.+++|.+|.+.|.+|.+
T Consensus 555 D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~a 634 (1105)
T KOG1326|consen 555 DWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDA 634 (1105)
T ss_pred hccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCc
Confidence 0 0 000 001235556788999999999999999999
Q ss_pred CcEEEEEECCeE--EEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEce
Q 005132 519 DPYVKVQYGDLK--KRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQ 581 (713)
Q Consensus 519 DPyv~v~~~~~~--~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG~~~i~L~ 581 (713)
|||+++.+|++. -++..+.+|+||+|++.|++... ...+.++|||+|.+++|+.||+.+++|+
T Consensus 635 dpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 635 DPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE 702 (1105)
T ss_pred CceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhh
Confidence 999999999976 57788999999999999988863 6789999999999999999999999986
No 107
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.65 E-value=5.5e-16 Score=142.32 Aligned_cols=108 Identities=29% Similarity=0.353 Sum_probs=94.3
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECC-eEEEEEeee-CCCCCeeeeEEEEecC-------CCeEEEEEEECCCCC
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIF-KTLNPQWHQTLEFPDD-------GSPLTLHVRDHNALL 568 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~-~t~nP~wne~~~f~v~-------~~~l~i~V~D~d~~~ 568 (713)
.|+|+|++|++|+..+..+.+||||+|++++ .+++|+++. ++.||.|||.|.|.+. ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4799999999999998889999999999988 889999975 5899999999999983 368999999999989
Q ss_pred CCCeeEEEEEEceecCCCCc-----eeeEEEcC---CCCCcEEEE
Q 005132 569 ASSSIGDCVVEYQRLPPNQM-----ADKWIPLQ---GVRKGEIHV 605 (713)
Q Consensus 569 ~d~~iG~~~i~L~~l~~~~~-----~~~w~~L~---~~~~G~i~~ 605 (713)
+|++||++.++|.++..+.. ...||+|. +..+|+|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 99999999999999865443 47999996 456788864
No 108
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.65 E-value=1.7e-15 Score=138.16 Aligned_cols=110 Identities=25% Similarity=0.480 Sum_probs=96.9
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeEE
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGS 444 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG~ 444 (713)
|.|+|++|++|+..+..|.+||||++++++. .++|+++ ++.||.|||.|.|.+......|.|+|||++.. +|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 7899999999999999999999999999765 5799999 99999999999999876678999999999988 8999999
Q ss_pred EEEeccccccCC-eeeeeeeceecc-----cceEEEEEE
Q 005132 445 ARVNLEGLVEGS-VRDIWVPLEKVN-----TGELRLQIE 477 (713)
Q Consensus 445 ~~i~l~~l~~~~-~~~~w~~L~~~~-----~G~I~l~l~ 477 (713)
+.++++++.... ..+.|++|.+.. .|+|++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999999887543 367899998643 799988864
No 109
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.65 E-value=2e-15 Score=139.95 Aligned_cols=111 Identities=27% Similarity=0.551 Sum_probs=98.3
Q ss_pred cEEEEEEEEeEcCCCCCC----------CCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEE
Q 005132 366 RKINVTVVEGKDLMPKDK----------SGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYN 433 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~----------~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d 433 (713)
|.|.|+|++|++|...+. .+.+||||++.++++ ..+|+++ ++.||.|||+|+|.+. +...+.|.|||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d 82 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFH 82 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEe
Confidence 689999999999987775 267999999999875 4799999 9999999999999986 56789999999
Q ss_pred ecCC-CCceeEEEEEecccccc--CCeeeeeeeceecccceEEEEEEEE
Q 005132 434 EEIF-GDENMGSARVNLEGLVE--GSVRDIWVPLEKVNTGELRLQIEAT 479 (713)
Q Consensus 434 ~~~~-~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~G~I~l~l~~~ 479 (713)
++.. .+++||.+.++|.++.. +...+.|++|+ +.|+|++++.|.
T Consensus 83 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~ 129 (132)
T cd04014 83 DAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELK 129 (132)
T ss_pred CCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEe
Confidence 8877 78999999999999987 45678999998 469999999987
No 110
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=1e-15 Score=138.28 Aligned_cols=100 Identities=20% Similarity=0.308 Sum_probs=87.3
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEE-C----C--eEEeccCC-CCCCCccceEEEEEEeCC----CceEEEEEEEe
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-G----K--IVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNE 434 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-~----~--~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~ 434 (713)
.|.|+|++|++|+..+ .|.+||||+|++ | . ++++|+++ ++.||+|||+|+|.+... ...|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999998877 599999999998 3 2 35789999 999999999999998742 45799999999
Q ss_pred cCC-CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132 435 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 467 (713)
Q Consensus 435 ~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 467 (713)
+.. ++++||++.+++.++..+.....|++|+..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 876 789999999999999988888999999763
No 111
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.65 E-value=2.8e-15 Score=136.32 Aligned_cols=111 Identities=24% Similarity=0.404 Sum_probs=98.7
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeE
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 443 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG 443 (713)
|.|.|+|++|++|+..+..+.+||||++++++..++|+++ ++.||.|||+|.|.+......+.|+|||++.. ++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 5799999999999998888999999999999888999999 99999999999999876578999999999886 889999
Q ss_pred EEEEeccccccCCeeeeeeeceec-----ccceEEEEEEE
Q 005132 444 SARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA 478 (713)
Q Consensus 444 ~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~I~l~l~~ 478 (713)
++.+++.++..+. ..|++|... ..|+|.+++++
T Consensus 81 ~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 81 KVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999987553 579998653 37999998875
No 112
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=1.4e-15 Score=141.29 Aligned_cols=112 Identities=28% Similarity=0.364 Sum_probs=98.0
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-------EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF- 437 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-------~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~- 437 (713)
.|.|+|++|++|+..+..+.+||||++++++. .++|+++ ++.||.|||+|.|.+......|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 38999999999999988899999999999543 5799999 99999999999999876677899999999988
Q ss_pred CCceeEEEEEeccccccCC------eeeeeeeceec-----ccceEEEEEEE
Q 005132 438 GDENMGSARVNLEGLVEGS------VRDIWVPLEKV-----NTGELRLQIEA 478 (713)
Q Consensus 438 ~d~~lG~~~i~l~~l~~~~------~~~~w~~L~~~-----~~G~I~l~l~~ 478 (713)
++++||.+.+++.++.... ....||+|++. ..|+|++++.|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 7999999999999988653 24689999863 36999999987
No 113
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.64 E-value=1.6e-15 Score=135.17 Aligned_cols=96 Identities=15% Similarity=0.250 Sum_probs=82.9
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC---C-eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---K-IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF 437 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~---~-~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~ 437 (713)
+.|.|+|++|++|+ ..|.+||||++++. + .+++|+++ +|.||+|||+|.|.+... ...|.|.|||+|.+
T Consensus 14 ~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drf 90 (118)
T cd08677 14 AELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRF 90 (118)
T ss_pred CEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCC
Confidence 58999999999998 24669999999993 2 47899999 999999999999997663 67899999999999
Q ss_pred -CCceeEEEEEeccccccCCeeeeeeec
Q 005132 438 -GDENMGSARVNLEGLVEGSVRDIWVPL 464 (713)
Q Consensus 438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L 464 (713)
++++||++.+++.++..+.....|..|
T Consensus 91 s~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 91 SRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCceEEEEEEccccccCCccccchhcC
Confidence 999999999999998666666678654
No 114
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=2.2e-15 Score=137.01 Aligned_cols=107 Identities=29% Similarity=0.370 Sum_probs=94.4
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEECC-eEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCee
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSI 573 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~i 573 (713)
|.|+|+|++|++|+..+..+.+||||++.+++ ..++|++++++.||.|||+|.|++. ...|.|+|||++.+++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 67999999999999999889999999999977 4789999999999999999999874 57899999999999999999
Q ss_pred EEEEEEceecCCCCceeeEEEcCCCCCcEEE
Q 005132 574 GDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604 (713)
Q Consensus 574 G~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~ 604 (713)
|++.+++.++..+ ....||.|.+...+.+.
T Consensus 81 G~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 81 GSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred eEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 9999999999776 56788888765555543
No 115
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.64 E-value=2.3e-15 Score=138.03 Aligned_cols=102 Identities=24% Similarity=0.446 Sum_probs=93.2
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeC-CCCCeeeeEEEEecC------CCeEEEEEEECCCCCC
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD------GSPLTLHVRDHNALLA 569 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~------~~~l~i~V~D~d~~~~ 569 (713)
|.|.|+|++|++|+..+..+.+||||++++++..++|++..+ +.||.|||+|.|.+. ...|.|+|||++.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 679999999999999888899999999999999999999885 899999999999984 2579999999999999
Q ss_pred CCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132 570 SSSIGDCVVEYQRLPPNQMADKWIPLQGV 598 (713)
Q Consensus 570 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 598 (713)
|++||++.+++.++..+.....|+.|+..
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999877788999999864
No 116
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.64 E-value=1.9e-15 Score=138.25 Aligned_cols=110 Identities=27% Similarity=0.543 Sum_probs=96.2
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCceeE
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 443 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~lG 443 (713)
.|+|+|++|++|...+..+.+||||++++++..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. ++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 389999999999998888899999999999999999999 999999999999998765 57899999999887 789999
Q ss_pred EEEEeccccccCCeeeeeeeceec---------ccceEEEEE
Q 005132 444 SARVNLEGLVEGSVRDIWVPLEKV---------NTGELRLQI 476 (713)
Q Consensus 444 ~~~i~l~~l~~~~~~~~w~~L~~~---------~~G~I~l~l 476 (713)
.+.+++.++..+.....|+.|... ..|.|++.+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999877667889998752 246666654
No 117
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.64 E-value=1.2e-15 Score=142.00 Aligned_cols=99 Identities=27% Similarity=0.391 Sum_probs=89.9
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEEC----CeEEEEEeeeCCCCCeeeeEEEEecCC------------------Ce
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQYG----DLKKRTKVIFKTLNPQWHQTLEFPDDG------------------SP 556 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~v~~~t~nP~wne~~~f~v~~------------------~~ 556 (713)
|+|.|++|++|+.. ..|.+||||+++++ ..+++|++++++.||.|||+|.|.+.. ..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78899999999998 678999999999999999999999742 47
Q ss_pred EEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132 557 LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 598 (713)
Q Consensus 557 l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 598 (713)
|.|+|||++.++++++||++.+++.++........||+|+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999998999999999999999877788999999753
No 118
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.64 E-value=1.1e-15 Score=143.79 Aligned_cols=100 Identities=30% Similarity=0.491 Sum_probs=89.1
Q ss_pred CCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe-----------------------------EEEEEeeeCCCC
Q 005132 491 NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-----------------------------KKRTKVIFKTLN 541 (713)
Q Consensus 491 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-----------------------------~~kT~v~~~t~n 541 (713)
...++.+.|+|+|++|++|.+.|..|.+||||++.+.+. .++|+++++|+|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 456889999999999999999999999999999999631 368999999999
Q ss_pred CeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEc
Q 005132 542 PQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 595 (713)
Q Consensus 542 P~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L 595 (713)
|.|||+|.|.+. ...|.|+|||++ |++||++.++++++.. .....||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999984 568999999998 8899999999999983 457999987
No 119
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.64 E-value=2.2e-15 Score=136.69 Aligned_cols=98 Identities=27% Similarity=0.461 Sum_probs=86.0
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC--CceEEEEEEEecCC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF 437 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~ 437 (713)
+.|.|+|++|+||+..+ .|.+||||++++. ..++||+++ ++.||.|||+|.|.+... ...|.|.|||++..
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 58999999999999888 7899999999993 237799999 999999999999997653 45789999998876
Q ss_pred --CCceeEEEEEeccccccCCeeeeeeec
Q 005132 438 --GDENMGSARVNLEGLVEGSVRDIWVPL 464 (713)
Q Consensus 438 --~d~~lG~~~i~l~~l~~~~~~~~w~~L 464 (713)
++++||.+.+++.++..+.....||.|
T Consensus 91 ~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred cCCCEEEEEEEecHHHhccCccccceEeC
Confidence 478999999999999877778899976
No 120
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.63 E-value=4.2e-15 Score=136.22 Aligned_cols=100 Identities=28% Similarity=0.442 Sum_probs=89.9
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC---CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF- 437 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~---~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~- 437 (713)
+.|.|+|++|+||+..+..+.+||||++++. ...++|+++ ++.||.|||+|.|.+... ...|.|+|||++.+
T Consensus 16 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~ 95 (124)
T cd08385 16 NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFS 95 (124)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCC
Confidence 4899999999999998888999999999983 357899999 999999999999997652 56899999999988
Q ss_pred CCceeEEEEEeccccccCCeeeeeeece
Q 005132 438 GDENMGSARVNLEGLVEGSVRDIWVPLE 465 (713)
Q Consensus 438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 465 (713)
++++||++.+++.++..+...+.|++|+
T Consensus 96 ~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 96 KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 8899999999999998888888999986
No 121
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.63 E-value=3.6e-15 Score=136.98 Aligned_cols=100 Identities=22% Similarity=0.336 Sum_probs=86.8
Q ss_pred cEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEec
Q 005132 366 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE 435 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~-g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~ 435 (713)
+.|.|+|++|+||+.++.. |.+||||++++. ...+||+++ ++.||+|||+|.|.+... ...|.|.|||.+
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~ 94 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSR 94 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCC
Confidence 4899999999999988865 999999999993 237799999 999999999999997653 579999999999
Q ss_pred CC-CCceeEEEEEeccccccC---Ceeeeeeece
Q 005132 436 IF-GDENMGSARVNLEGLVEG---SVRDIWVPLE 465 (713)
Q Consensus 436 ~~-~d~~lG~~~i~l~~l~~~---~~~~~w~~L~ 465 (713)
.+ ++++||++.|+|.++... .....||+|.
T Consensus 95 ~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 95 TLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 87 889999999999998643 3577899874
No 122
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.63 E-value=2.5e-15 Score=137.19 Aligned_cols=92 Identities=29% Similarity=0.492 Sum_probs=83.2
Q ss_pred CCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEec----CCCeEEEEEEECCCC
Q 005132 492 IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD----DGSPLTLHVRDHNAL 567 (713)
Q Consensus 492 ~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v----~~~~l~i~V~D~d~~ 567 (713)
.....+.|+|+|++|++|+. +..+.+||||+|++++.+++|+++++++||+|||+|.|.. ....|.|+|||+|.+
T Consensus 23 ~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~ 101 (127)
T cd04032 23 TRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG 101 (127)
T ss_pred CcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence 45677999999999999984 6678899999999999999999999999999999999973 267999999999999
Q ss_pred CCCCeeEEEEEEceecC
Q 005132 568 LASSSIGDCVVEYQRLP 584 (713)
Q Consensus 568 ~~d~~iG~~~i~L~~l~ 584 (713)
++|++||++.++|....
T Consensus 102 s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 102 WDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCeeEEEEEEecCCc
Confidence 99999999999998654
No 123
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.63 E-value=3.3e-15 Score=139.87 Aligned_cols=93 Identities=14% Similarity=0.355 Sum_probs=81.1
Q ss_pred cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCc-EEEEeecCCCCCCcccceEEEEEec
Q 005132 173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDARPGSDPRWDSMFNMVLHE 251 (713)
Q Consensus 173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~-~~~tt~i~~~~nP~WnEtf~~~v~~ 251 (713)
|.|+|+|++|++|+..+. +++ ||||++.++. ..+|++++++.||+|||+|.|.+.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~s----------------------DPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~ 58 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSS----------------------DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPN 58 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCc----------------------CcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecC
Confidence 899999999999998776 443 9999999975 4566668899999999999999988
Q ss_pred CCceEEEEEEEeCCCCCccceeEEEEEEcccccCCccc
Q 005132 252 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTT 289 (713)
Q Consensus 252 ~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~ 289 (713)
..+.|.|+|||+|. +.+||+||.++++++++.....+
T Consensus 59 ~~~~l~~~V~D~d~-~~~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 59 PMAPLKLEVFDKDT-FSKDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred CCCEEEEEEEECCC-CCCCCEEEEEEEEHHHhhhhhhh
Confidence 88999999999997 47889999999999999865443
No 124
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=2.9e-15 Score=137.17 Aligned_cols=115 Identities=23% Similarity=0.325 Sum_probs=98.4
Q ss_pred cEEEEEEEEeEcCCCCC-CCCCCCcEEEEEECC--eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCc
Q 005132 366 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYGK--IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDE 440 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~-~~g~~dpyv~v~l~~--~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~ 440 (713)
|.|.|+|++|++|+..+ ..+.+||||++.+++ ..++|+++ ++.||.|||.|.|.+......|.|+|||++.. +|+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~ 81 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK 81 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence 68999999999998655 456799999999976 78999999 99999999999999886688999999999888 899
Q ss_pred eeEEEEEeccccccCCeee-eeeece--ecccceEEEEEEEEe
Q 005132 441 NMGSARVNLEGLVEGSVRD-IWVPLE--KVNTGELRLQIEATR 480 (713)
Q Consensus 441 ~lG~~~i~l~~l~~~~~~~-~w~~L~--~~~~G~I~l~l~~~~ 480 (713)
+||.+.+++.++....... .|+.+. +...|+|+++++|.|
T Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 9999999999998766543 344443 345899999999974
No 125
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=5.5e-15 Score=137.53 Aligned_cols=115 Identities=24% Similarity=0.428 Sum_probs=97.2
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC----------CCceEEEEEEEec
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG----------GGECLMVKCYNEE 435 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~----------~~~~l~i~V~d~~ 435 (713)
.|+|+|++|++|+..+..|.+||||++++++..++|+++ ++.||.|||.|.|.+.. ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 689999999999999999999999999999999999999 99999999999997532 1257999999999
Q ss_pred CC-CCceeEEEEE-ecccccc---CCeeeeeeeceec--ccceEEEEEEEEee
Q 005132 436 IF-GDENMGSARV-NLEGLVE---GSVRDIWVPLEKV--NTGELRLQIEATRV 481 (713)
Q Consensus 436 ~~-~d~~lG~~~i-~l~~l~~---~~~~~~w~~L~~~--~~G~I~l~l~~~~~ 481 (713)
.. +|++||++.+ ++..+.. .....+|++|... ..|+|.++++++++
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 87 7899999997 4444432 3467899999853 47999999999854
No 126
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=2.4e-15 Score=134.91 Aligned_cols=95 Identities=25% Similarity=0.431 Sum_probs=84.9
Q ss_pred cCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEceecCC-CCc
Q 005132 514 LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP-NQM 588 (713)
Q Consensus 514 ~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~-~~~ 588 (713)
.+|.+||||+++++++ ..+|++++++.||+|||+|.|.+. ...|.|+|+|++.+ +|++||++.++|+++.. ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence 5788999999999885 679999999999999999999985 36699999999999 89999999999998843 345
Q ss_pred eeeEEEcCCCCCcEEEEEEEE
Q 005132 589 ADKWIPLQGVRKGEIHVLITR 609 (713)
Q Consensus 589 ~~~w~~L~~~~~G~i~~~l~~ 609 (713)
..+|++|.+.+.|+|+++++|
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~ 108 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALW 108 (111)
T ss_pred cceeEECCCCCCCEEEEEEEE
Confidence 689999998889999999998
No 127
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.62 E-value=1.8e-15 Score=135.77 Aligned_cols=91 Identities=19% Similarity=0.365 Sum_probs=78.1
Q ss_pred cEEEEEEEeeCCCCCCCCC-CCCcccccccCCCCccccccCCCCcCcEEEEEeC----cEEEEeecCCCCCCcccceEEE
Q 005132 173 GIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDARPGSDPRWDSMFNM 247 (713)
Q Consensus 173 GvL~V~v~~A~~L~~~~~~-~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g----~~~~tt~i~~~~nP~WnEtf~~ 247 (713)
|+|+|+|++|++|+..+.. |++ ||||+|.+. ...+|++++++.||+|||+|.|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~----------------------Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f 58 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSS----------------------DPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFV 58 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC----------------------CccEEEEEccCCCccEeeeeECCCCCCccceeEEE
Confidence 8999999999999988865 543 999999983 3467777899999999999999
Q ss_pred EEecC----CceEEEEEEEeCCCCCccceeEEEEEEcccccCC
Q 005132 248 VLHEE----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 286 (713)
Q Consensus 248 ~v~~~----~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~ 286 (713)
.+... .+.|.|+|||+|.. .++|+||.+.+++.++..+
T Consensus 59 ~~~~~~~~~~~~l~~~V~d~d~~-~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 59 LVTPDEVKAGERLSCRLWDSDRF-TADDRLGRVEIDLKELIED 100 (111)
T ss_pred EeCchhccCCCEEEEEEEeCCCC-CCCCcceEEEEEHHHHhcC
Confidence 87543 46899999999983 6889999999999999864
No 128
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.62 E-value=5.2e-15 Score=135.76 Aligned_cols=99 Identities=27% Similarity=0.471 Sum_probs=85.5
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEec
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE 435 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~ 435 (713)
+.|.|+|++|++|+..+..+.+||||++++.. ..++|+++ ++.||+|||+|.|.+.. ....|.|+|||++
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~ 95 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYD 95 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCC
Confidence 58999999999999988889999999999943 57899999 99999999999998644 2578999999999
Q ss_pred CC-CCceeEEEEEeccccccCCeeeeeeece
Q 005132 436 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE 465 (713)
Q Consensus 436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 465 (713)
.. ++++||++.+++.+.. ......||+|+
T Consensus 96 ~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 96 RDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 87 7899999999999933 33346899985
No 129
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=3.6e-15 Score=134.71 Aligned_cols=106 Identities=29% Similarity=0.507 Sum_probs=93.8
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEECC-eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 574 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG 574 (713)
|+|+|++|++|+..+..+.+||||+|.+.+ ..++|+++.++.||.|||+|.|.+. ...+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 578999999999998888999999999976 4579999999999999999999984 468999999999999999999
Q ss_pred EEEEEceecCCCCceeeEEEcCCC---CCcEEE
Q 005132 575 DCVVEYQRLPPNQMADKWIPLQGV---RKGEIH 604 (713)
Q Consensus 575 ~~~i~L~~l~~~~~~~~w~~L~~~---~~G~i~ 604 (713)
++.+++.++..+.....|++|.+. ..|.+.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~ 113 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF 113 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence 999999999888889999999743 335553
No 130
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.62 E-value=3e-15 Score=140.15 Aligned_cols=88 Identities=32% Similarity=0.595 Sum_probs=82.3
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 574 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG 574 (713)
|.|+|+|++|++|+..+. +.+||||++++++++++|+++++++||+|||+|.|.+. ...|.|+|||++.+++|++||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 789999999999998887 89999999999999999999999999999999999984 568999999999999999999
Q ss_pred EEEEEceecCC
Q 005132 575 DCVVEYQRLPP 585 (713)
Q Consensus 575 ~~~i~L~~l~~ 585 (713)
++.+++..+..
T Consensus 81 ~a~i~l~~l~~ 91 (145)
T cd04038 81 EAEIDLEPLVE 91 (145)
T ss_pred EEEEEHHHhhh
Confidence 99999988754
No 131
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.62 E-value=2.8e-15 Score=140.78 Aligned_cols=99 Identities=28% Similarity=0.435 Sum_probs=86.1
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEEEe------------C----CC
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEI------------G----GG 424 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~v~------------~----~~ 424 (713)
.|.|+|++|++|.. ..|.+||||+|++.. ..++|+++ ++.||+|||+|.|.+. . ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999987 568999999999954 57899999 9999999999999984 1 13
Q ss_pred ceEEEEEEEecCC-CCceeEEEEEeccccccC-Ceeeeeeeceec
Q 005132 425 ECLMVKCYNEEIF-GDENMGSARVNLEGLVEG-SVRDIWVPLEKV 467 (713)
Q Consensus 425 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~-~~~~~w~~L~~~ 467 (713)
..|.|.|||++.. +|++||++.|++.++..+ .....||+|+..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 5799999999987 899999999999999876 567899999764
No 132
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.61 E-value=1e-14 Score=133.97 Aligned_cols=112 Identities=18% Similarity=0.253 Sum_probs=97.0
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeEE
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS 444 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~ 444 (713)
.+++|+|++|++|...+..|.+||||++.++++.++|+++ ++.||.|||.|.|.+......|.|+|||++..+|++||.
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~ 82 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQ 82 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEE
Confidence 4899999999999998888999999999999999999999 999999999999988777889999999998888999999
Q ss_pred EEEeccccccCCeeeeeeecee-------cccceEEEEEEEE
Q 005132 445 ARVNLEGLVEGSVRDIWVPLEK-------VNTGELRLQIEAT 479 (713)
Q Consensus 445 ~~i~l~~l~~~~~~~~w~~L~~-------~~~G~I~l~l~~~ 479 (713)
+.+++.++. .....|++|.. ...|+|.+++.+.
T Consensus 83 ~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 83 ATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 999998764 33446777742 2368888887654
No 133
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.61 E-value=9.9e-15 Score=135.16 Aligned_cols=109 Identities=24% Similarity=0.317 Sum_probs=91.3
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECC-------------eEEEEEeeeCCCCCee-eeEEEEec-CCCeEEEEEE
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-------------LKKRTKVIFKTLNPQW-HQTLEFPD-DGSPLTLHVR 562 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-------------~~~kT~v~~~t~nP~w-ne~~~f~v-~~~~l~i~V~ 562 (713)
.+.|.+++|+||+ .+..|.+||||++++.+ ++++|+++++|+||+| ||+|.|.+ ....|.++||
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~ 80 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVK 80 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEE
Confidence 3678999999998 67789999999999942 3689999999999999 99999998 4678999999
Q ss_pred ECCCCCC---CCeeEEEEEEceecCCC---CceeeEEEcCC-----CCCcEEEEEE
Q 005132 563 DHNALLA---SSSIGDCVVEYQRLPPN---QMADKWIPLQG-----VRKGEIHVLI 607 (713)
Q Consensus 563 D~d~~~~---d~~iG~~~i~L~~l~~~---~~~~~w~~L~~-----~~~G~i~~~l 607 (713)
|++..++ +++||++.+++.++..+ ....+||+|.. ..+|+|.+.+
T Consensus 81 D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 81 DKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred ecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9876544 79999999999998644 35789999963 3358888765
No 134
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.60 E-value=6.1e-15 Score=132.75 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=85.4
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCCCCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeEEE
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSA 445 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~~ 445 (713)
+.|.|+|++|++|+..+ ..||||+|.+++++.+|++.++.||.|||.|.|.+......|.|+|||++...|++||++
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v 78 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRGSQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTV 78 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCCCCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEE
Confidence 47999999999997544 468999999999999999993369999999999987776679999999997799999999
Q ss_pred EEeccccccCCe--eeeeeecee
Q 005132 446 RVNLEGLVEGSV--RDIWVPLEK 466 (713)
Q Consensus 446 ~i~l~~l~~~~~--~~~w~~L~~ 466 (713)
.++|.++..+.. ...||+|+.
T Consensus 79 ~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 79 WIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEEhHHcccCCCCCCCccEecCh
Confidence 999999986554 479999984
No 135
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=5.1e-15 Score=135.55 Aligned_cols=111 Identities=27% Similarity=0.352 Sum_probs=90.0
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECCeE--EEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLK--KRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 572 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~--~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~ 572 (713)
.++|.|++|++|++.+..|.+||||++++++.+ .+|+++++|+||+|||+|.|.+. ...|.|+|||+|.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 479999999999999999999999999998864 57888999999999999999863 5689999999999999999
Q ss_pred eEEEEEEceecCCCCceeeEEEcCC--CCCcEEEEEEEE
Q 005132 573 IGDCVVEYQRLPPNQMADKWIPLQG--VRKGEIHVLITR 609 (713)
Q Consensus 573 iG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~i~~~l~~ 609 (713)
||++.++|++.... ...+|.-+.. ...|.++..-.+
T Consensus 81 iG~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd04037 81 IGETVIDLEDRFFS-KHRATCGLPPTYEESGPNQWRDSL 118 (124)
T ss_pred eEEEEEeecccccc-hHHHhccCCCcccccCceecCccc
Confidence 99999999877532 1222222321 245777766665
No 136
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.60 E-value=1.1e-14 Score=133.91 Aligned_cols=100 Identities=27% Similarity=0.337 Sum_probs=89.2
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 436 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~ 436 (713)
+.|.|+|++|+||+..+..+.+||||++++. ...++|+++ ++.||.|||+|.|.+... ...|.|.|||++.
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS 95 (127)
T ss_pred CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence 4899999999999999988999999999993 458999999 999999999999997653 5789999999986
Q ss_pred C---CCceeEEEEEeccccccCCeeeeeeece
Q 005132 437 F---GDENMGSARVNLEGLVEGSVRDIWVPLE 465 (713)
Q Consensus 437 ~---~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 465 (713)
. ++++||.+.+++.++..+.....||+|+
T Consensus 96 ~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 96 FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ccCCCCceEEEEEEecccccccCCccceEECc
Confidence 3 7899999999999998777788999884
No 137
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.60 E-value=1.2e-14 Score=139.17 Aligned_cols=103 Identities=24% Similarity=0.384 Sum_probs=90.2
Q ss_pred CccEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEEeCC----CceEEEEEEE
Q 005132 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYN 433 (713)
Q Consensus 364 ~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d 433 (713)
+.|.|.|+|++|+||+..+..+.+||||++++ +...+||+++ ++.||.|||+|.|.+... ...|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 34799999999999999998899999999988 2358999999 999999999999985432 4589999999
Q ss_pred ecCC-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132 434 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK 466 (713)
Q Consensus 434 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 466 (713)
++.+ ++++||++.+++.++........|+++.+
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9988 79999999999999987777788998875
No 138
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.60 E-value=1.9e-14 Score=132.44 Aligned_cols=100 Identities=23% Similarity=0.287 Sum_probs=85.3
Q ss_pred cEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEC---CeEEeccCC-CCCCCccceEEEEE-EeC---CCceEEEEEEEecC
Q 005132 366 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEI 436 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~-g~~dpyv~v~l~---~~~~kT~~~-~t~nP~wne~f~f~-v~~---~~~~l~i~V~d~~~ 436 (713)
+.|.|+|++|+||+..+.. +.+||||++++. ++++||+++ ++.||.|||+|.|. +.. ....|.|+|||++.
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~ 95 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR 95 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC
Confidence 4899999999999988875 899999999983 457899999 99999999999995 332 24579999999988
Q ss_pred C-CCceeEEEEEeccccccC--Ceeeeeeece
Q 005132 437 F-GDENMGSARVNLEGLVEG--SVRDIWVPLE 465 (713)
Q Consensus 437 ~-~d~~lG~~~i~l~~l~~~--~~~~~w~~L~ 465 (713)
+ ++++||++.++|.++... .+...|++|+
T Consensus 96 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 96 YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 8 899999999999998654 5677898875
No 139
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.59 E-value=1.2e-14 Score=133.17 Aligned_cols=110 Identities=25% Similarity=0.429 Sum_probs=92.4
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEec-CCCeEEEEEEECCCCCCCCeeE
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPD-DGSPLTLHVRDHNALLASSSIG 574 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v-~~~~l~i~V~D~d~~~~d~~iG 574 (713)
..|+|+|.+|+ |...+..+.+||||++++++. ..+|+++++|+||.|||+|.|.+ ....|.|+|||++..+.|++||
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCCCCCCcEEE
Confidence 46899999998 555555788999999999887 89999999999999999999998 4678999999999999999999
Q ss_pred EEEEEceecCCCC---c--eeeEEEcCC------CCCcEEEEEE
Q 005132 575 DCVVEYQRLPPNQ---M--ADKWIPLQG------VRKGEIHVLI 607 (713)
Q Consensus 575 ~~~i~L~~l~~~~---~--~~~w~~L~~------~~~G~i~~~l 607 (713)
++.++|+++.... . ...|++|.. ...|+|.+.+
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999885432 2 345899852 3368888765
No 140
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.59 E-value=1.3e-14 Score=132.69 Aligned_cols=99 Identities=28% Similarity=0.426 Sum_probs=87.8
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEE-EeC---CCceEEEEEEEecCC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEIF 437 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~-v~~---~~~~l~i~V~d~~~~ 437 (713)
+.|.|+|++|+||+..+..|..||||++.+ .+..++|+++ + .||+|||+|.|. +.. ....|.|.|||++.+
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 489999999999999988899999999887 2457899988 7 999999999998 443 267899999999988
Q ss_pred -CCceeEEEEEeccccccCCeeeeeeece
Q 005132 438 -GDENMGSARVNLEGLVEGSVRDIWVPLE 465 (713)
Q Consensus 438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 465 (713)
++++||++.++|+++..+.....|++|+
T Consensus 95 ~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 95 RKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 7999999999999998888889999986
No 141
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.59 E-value=1.2e-14 Score=133.62 Aligned_cols=108 Identities=37% Similarity=0.649 Sum_probs=93.6
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC--------
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-------- 437 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-------- 437 (713)
.|.|+|++|++|+..+..|.+||||++++++..++|+++ ++.||.|||+|.|.+..+...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 689999999999999988999999999999899999999 99999999999999876677899999998741
Q ss_pred ----CCceeEEEEEeccccccCCeeeeeeeceec-----ccceEEEEE
Q 005132 438 ----GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQI 476 (713)
Q Consensus 438 ----~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~I~l~l 476 (713)
.+++||.+.+++.++.. ....||+|+.. .+|+|.+++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 58999999999998743 34689999863 267887763
No 142
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.59 E-value=2.5e-14 Score=133.10 Aligned_cols=109 Identities=21% Similarity=0.299 Sum_probs=93.7
Q ss_pred CceEEEEEEEccCccccccCCCCCcEEEEEECCeE-EEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCC-C---C
Q 005132 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNA-L---L 568 (713)
Q Consensus 496 ~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~-~---~ 568 (713)
...|.|.|++|++|++++ ||||.+.+++.. .||+++.++.||.|+|.|.|++. -..++|.|++.+. . .
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 367899999999999864 899999999987 59999999999999999999974 3679999976543 2 2
Q ss_pred CCCeeEEEEEEceecCCCCceeeEEEcCCC-------------CCcEEEEEEEE
Q 005132 569 ASSSIGDCVVEYQRLPPNQMADKWIPLQGV-------------RKGEIHVLITR 609 (713)
Q Consensus 569 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-------------~~G~i~~~l~~ 609 (713)
++++||.+.||+.++..+...+.||+|.+. ..+.|+++++|
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf 138 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARY 138 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEE
Confidence 678999999999999999899999999631 23799999999
No 143
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=1.8e-14 Score=132.56 Aligned_cols=110 Identities=28% Similarity=0.387 Sum_probs=98.0
Q ss_pred EEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC---CCceEEEEEEEecCC-CCceeEEEE
Q 005132 372 VVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GDENMGSAR 446 (713)
Q Consensus 372 I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~-~d~~lG~~~ 446 (713)
|++|++|+. ..|.+||||++++++..++|+++ ++.||+|||+|.|.+.. ....|.|+|||++.. ++++||.+.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 689999987 67899999999999999999999 99999999999999865 368999999999887 889999999
Q ss_pred EeccccccCCeeeeeeeceec----ccceEEEEEEEEeecC
Q 005132 447 VNLEGLVEGSVRDIWVPLEKV----NTGELRLQIEATRVDD 483 (713)
Q Consensus 447 i~l~~l~~~~~~~~w~~L~~~----~~G~I~l~l~~~~~~~ 483 (713)
++++++..+.....|++|.+. ..|+|++++.|.+.+.
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 999999988888899999643 2589999999997654
No 144
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.59 E-value=8.7e-15 Score=133.33 Aligned_cols=99 Identities=17% Similarity=0.274 Sum_probs=87.1
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--C----CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEec
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE 435 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~ 435 (713)
+.|.|+|++|+||+..+..+.+||||++++ + +..+||+++ ++.||+|||+|.|.+... ...|.|.|||++
T Consensus 14 ~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~ 93 (124)
T cd08680 14 SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVG 93 (124)
T ss_pred CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCC
Confidence 589999999999999888899999999998 2 248999999 999999999999997663 679999999998
Q ss_pred CC-CCceeEEEEEeccccccC-Ceeeeeeec
Q 005132 436 IF-GDENMGSARVNLEGLVEG-SVRDIWVPL 464 (713)
Q Consensus 436 ~~-~d~~lG~~~i~l~~l~~~-~~~~~w~~L 464 (713)
.. ++++||.+.++|.++... .....||+|
T Consensus 94 ~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 94 PDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 87 899999999999999544 357789876
No 145
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.59 E-value=2.3e-14 Score=131.70 Aligned_cols=111 Identities=25% Similarity=0.484 Sum_probs=97.3
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECC---eEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCc
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDE 440 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~---~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~ 440 (713)
.+.|+|++|++|+..+..+.+||||++.+++ ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 6899999999999988889999999999853 47899999 999999999999998774 67899999999987 899
Q ss_pred eeEEEEEecccccc---CCeeeeeeeceecccceEEEEEEEE
Q 005132 441 NMGSARVNLEGLVE---GSVRDIWVPLEKVNTGELRLQIEAT 479 (713)
Q Consensus 441 ~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~G~I~l~l~~~ 479 (713)
+||.+.+++.++.. +.....|++|.. .|++++.+.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence 99999999988653 335678999975 69999998876
No 146
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.59 E-value=2e-14 Score=131.99 Aligned_cols=100 Identities=21% Similarity=0.415 Sum_probs=88.9
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEecCC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF 437 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~~ 437 (713)
+.|.|+|++|++|+..+..+.+||||++++ +...++|+++ ++.||.|||+|.|.+.. ....|.|+|||++.+
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~ 95 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF 95 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence 489999999999999888899999999999 3567899999 99999999999997533 245799999999988
Q ss_pred -CCceeEEEEEeccccccCCeeeeeeece
Q 005132 438 -GDENMGSARVNLEGLVEGSVRDIWVPLE 465 (713)
Q Consensus 438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 465 (713)
++++||.+.+++.++..+.....|++|.
T Consensus 96 ~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 96 SRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred cCCcEeeEEEEecccccCCCCcceEEecC
Confidence 7899999999999998877888999885
No 147
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.58 E-value=1.2e-14 Score=133.04 Aligned_cols=108 Identities=17% Similarity=0.330 Sum_probs=92.7
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEC-CeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-C--Ccee
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G--DENM 442 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~--d~~l 442 (713)
|+|+|++|++|+..+..+.+||||+++++ .+.++|+++ ++.||.|||+|.|.+.. ...|.|+|||++.+ . |++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 78999999999998988999999999995 778999999 99999999999999865 78999999999887 2 5899
Q ss_pred EEEEEeccccccCC-eeeeeeeceecc-------cceEEEEE
Q 005132 443 GSARVNLEGLVEGS-VRDIWVPLEKVN-------TGELRLQI 476 (713)
Q Consensus 443 G~~~i~l~~l~~~~-~~~~w~~L~~~~-------~G~I~l~l 476 (713)
|.+.+++.++.... ....|++|.... .|+|.+++
T Consensus 81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999987554 346799996533 46666654
No 148
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.58 E-value=9e-15 Score=131.02 Aligned_cols=99 Identities=24% Similarity=0.478 Sum_probs=88.1
Q ss_pred EEEEEEEeEcCCCCCC-CCCCCcEEEEEECCeEEeccCC-CCCCCcc-ceEEEEEEeCC---CceEEEEEEEecCC-CCc
Q 005132 368 INVTVVEGKDLMPKDK-SGKCDPYVKLQYGKIVQRTRTA-HSPNHVW-NQKFELDEIGG---GECLMVKCYNEEIF-GDE 440 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~-~g~~dpyv~v~l~~~~~kT~~~-~t~nP~w-ne~f~f~v~~~---~~~l~i~V~d~~~~-~d~ 440 (713)
|.|+|++|++|+..+. .+.+||||++++++..+||+++ ++.||.| ||+|.|.+... ...|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999998874 6889999999999999999999 9999999 99999998763 47899999999987 789
Q ss_pred eeEEEEEecccccc---CCeeeeeeecee
Q 005132 441 NMGSARVNLEGLVE---GSVRDIWVPLEK 466 (713)
Q Consensus 441 ~lG~~~i~l~~l~~---~~~~~~w~~L~~ 466 (713)
+||++.+++.++.. +...+.||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999987 345788999864
No 149
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=3.5e-14 Score=128.63 Aligned_cols=105 Identities=31% Similarity=0.519 Sum_probs=85.9
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecCC-----CeEEEEEEECCCCCCCCe
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDDG-----SPLTLHVRDHNALLASSS 572 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~~-----~~l~i~V~D~d~~~~d~~ 572 (713)
|+|+|++|++|+.. |.+||||++++++. .++|+++++ .||.|||+|.|.+.. ..|.+.+||.+..+++.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 78999999999885 479999999 999999999999854 357788888887766666
Q ss_pred eEEEEEEceecCCCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132 573 IGDCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR 609 (713)
Q Consensus 573 iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~~~l~~ 609 (713)
+|.+. +..+..+.....||+|.+. ..|+|++++.|
T Consensus 78 ~g~v~--l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVA--LSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEE--ecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 66655 4555557778999999753 36999999875
No 150
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.57 E-value=3.2e-14 Score=130.14 Aligned_cols=99 Identities=22% Similarity=0.399 Sum_probs=87.4
Q ss_pred cEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEC--C---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEec
Q 005132 366 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE 435 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~-~~g~~dpyv~v~l~--~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~ 435 (713)
+.|.|+|++|+||+..+ ..+.+||||++++. + ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 93 (123)
T cd08521 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHD 93 (123)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCC
Confidence 58999999999999888 77899999999982 1 46899999 999999999999997653 568999999998
Q ss_pred CC-CCceeEEEEEeccccccCCeeeeeeec
Q 005132 436 IF-GDENMGSARVNLEGLVEGSVRDIWVPL 464 (713)
Q Consensus 436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L 464 (713)
.. ++++||.+.+++.++..+...+.||+|
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 94 RFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCcCCceeeEEEEecccccccCCCccEEEC
Confidence 87 789999999999999877778899986
No 151
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=1.2e-14 Score=136.75 Aligned_cols=105 Identities=18% Similarity=0.269 Sum_probs=89.9
Q ss_pred EEEEEEEEeEcCCCCCCC--------------CCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC--CceEEE
Q 005132 367 KINVTVVEGKDLMPKDKS--------------GKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMV 429 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~--------------g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i 429 (713)
+|.|+|++|++|+.++.. +.+||||+|.++++..+|+++ ++.||+|||+|.|.+..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999988744 368999999999999999999 999999999999997543 679999
Q ss_pred EEEEecCC-CCceeEEEEEeccccccCCe-------eeeeeeceecccce
Q 005132 430 KCYNEEIF-GDENMGSARVNLEGLVEGSV-------RDIWVPLEKVNTGE 471 (713)
Q Consensus 430 ~V~d~~~~-~d~~lG~~~i~l~~l~~~~~-------~~~w~~L~~~~~G~ 471 (713)
+|||++.. +|++||.+.+++.++..... ...|+.|.+..++.
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 99999988 99999999999999876543 35788887765554
No 152
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.57 E-value=1.4e-14 Score=132.00 Aligned_cols=95 Identities=24% Similarity=0.344 Sum_probs=85.1
Q ss_pred EEEEccCccccccCCCCCcEEEEEECCe-------EEEEEeeeCCCCCeeeeEEEEec---CCCeEEEEEEECCC----C
Q 005132 502 VIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLNPQWHQTLEFPD---DGSPLTLHVRDHNA----L 567 (713)
Q Consensus 502 ~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~nP~wne~~~f~v---~~~~l~i~V~D~d~----~ 567 (713)
..++|++|+..+..|.+||||++++.+. .++|+++++|+||+|||+|.|.+ ....|.|+|||+|. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 4588999999998899999999999664 48999999999999999999975 35689999999997 8
Q ss_pred CCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132 568 LASSSIGDCVVEYQRLPPNQMADKWIPLQ 596 (713)
Q Consensus 568 ~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 596 (713)
++|++||++.+++.++..+.....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 89999999999999998877788899994
No 153
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.56 E-value=1.8e-14 Score=131.54 Aligned_cols=92 Identities=21% Similarity=0.343 Sum_probs=76.3
Q ss_pred ccccccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC-cEEEEeecCCCCCCcccceEE
Q 005132 168 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFN 246 (713)
Q Consensus 168 ~~~~~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g-~~~~tt~i~~~~nP~WnEtf~ 246 (713)
+.++ |.|+|+|++|++|+. +..|++ ||||+|+++ ...+|++++++.||+|||+|.
T Consensus 24 ~~~~-~~L~V~V~~A~~L~~-d~~g~~----------------------DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~ 79 (127)
T cd04032 24 RRGL-ATLTVTVLRATGLWG-DYFTST----------------------DGYVKVFFGGQEKRTEVIWNNNNPRWNATFD 79 (127)
T ss_pred cCCc-EEEEEEEEECCCCCc-CcCCCC----------------------CeEEEEEECCccccCceecCCCCCcCCCEEE
Confidence 4444 999999999999974 444433 999999995 556777788999999999999
Q ss_pred EEEec--CCceEEEEEEEeCCCCCccceeEEEEEEccccc
Q 005132 247 MVLHE--ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 284 (713)
Q Consensus 247 ~~v~~--~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~ 284 (713)
|.... ..+.|.|+|||+|. ..++|+||+++++|....
T Consensus 80 f~~~~~~~~~~L~v~V~D~d~-~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 80 FGSVELSPGGKLRFEVWDRDN-GWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EecccCCCCCEEEEEEEeCCC-CCCCCeeEEEEEEecCCc
Confidence 97533 37899999999998 368999999999999766
No 154
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.56 E-value=1.5e-14 Score=136.26 Aligned_cols=103 Identities=13% Similarity=0.291 Sum_probs=84.3
Q ss_pred cCcceeecccccc---c-----cccccccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEe
Q 005132 153 EPRRRCYSLPAVD---L-----RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL 224 (713)
Q Consensus 153 ~P~~~~~~l~~~~---l-----~~~~~~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~ 224 (713)
+|+. |.++.++ | ...+..+.|.|+|++|++|...|..|.+ ||||+|.+
T Consensus 2 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~V~vi~a~~L~~~d~~g~~----------------------DPyv~v~l 57 (153)
T cd08676 2 AQQA--FGVSPEEHEALLERVREAEPPIFVLKVTVIEAKGLLAKDVNGFS----------------------DPYCMLGI 57 (153)
T ss_pred hHHh--hCCCHHHHHHHHHHHHhcCCCeEEEEEEEEeccCCcccCCCCCC----------------------CceEEEEE
Confidence 4566 6666555 3 2344469999999999999998876654 99999998
Q ss_pred Cc------------------------------EEEEeecCCCCCCcccceEEEEEecC-CceEEEEEEEeCCCCCcccee
Q 005132 225 EE------------------------------LTRRTDARPGSDPRWDSMFNMVLHEE-TGTVRFNLYECIPGHVKYDYL 273 (713)
Q Consensus 225 g~------------------------------~~~tt~i~~~~nP~WnEtf~~~v~~~-~~~L~~~v~d~d~~~~~dd~l 273 (713)
+. ..+|++++++.||+|||+|.|.+... .+.|.|+|||++ +++|
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~I 132 (153)
T cd08676 58 VPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD-----DDFL 132 (153)
T ss_pred cccccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC-----CCeE
Confidence 52 24666678999999999999999775 689999999987 7899
Q ss_pred EEEEEEccccc
Q 005132 274 TSCEVKMKYVA 284 (713)
Q Consensus 274 G~~~i~l~~l~ 284 (713)
|.+.+++.++.
T Consensus 133 G~v~i~l~~l~ 143 (153)
T cd08676 133 GCVNIPLKDLP 143 (153)
T ss_pred EEEEEEHHHhC
Confidence 99999999987
No 155
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.56 E-value=5.2e-14 Score=125.05 Aligned_cols=93 Identities=15% Similarity=0.351 Sum_probs=75.9
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC-CCeEEEEEEEC-------C
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDH-------N 565 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~-------d 565 (713)
|.|+|.+|+||+ +.+||||++.+.+ .+.+|+++++|+||+|||+|.|++. ...|.+.|||+ |
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCCCCEEEEEEEEccccccccc
Confidence 579999999995 4699999999953 3689999999999999999999985 67899999998 5
Q ss_pred CCCCCCeeEEEEEEce--ecCCCCceeeEEEcC
Q 005132 566 ALLASSSIGDCVVEYQ--RLPPNQMADKWIPLQ 596 (713)
Q Consensus 566 ~~~~d~~iG~~~i~L~--~l~~~~~~~~w~~L~ 596 (713)
..+.|+.+|.+.+.|+ .+........-+.|.
T Consensus 76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred ccCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 6788999998888775 344444445555555
No 156
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.56 E-value=3e-14 Score=129.60 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=93.9
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCcee
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM 442 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~l 442 (713)
|.|.|+|++|++|+..+..+.+||||++++++ ..++|+++ ++.||.|||.|.|.+......|.|+|||++.. +|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 58999999999999988889999999999976 57999999 99999999999999877778999999999988 78999
Q ss_pred EEEEEeccccccCCeeeeeeeceecccceEE
Q 005132 443 GSARVNLEGLVEGSVRDIWVPLEKVNTGELR 473 (713)
Q Consensus 443 G~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~ 473 (713)
|++.+++.++..+ ..+.||.|-+.+.+.+.
T Consensus 81 G~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 81 GSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred eEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 9999999999877 45678888776555543
No 157
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.56 E-value=4.6e-14 Score=129.12 Aligned_cols=100 Identities=19% Similarity=0.377 Sum_probs=89.2
Q ss_pred cEEEEEEEEeEcCCCCC-CCCCCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC
Q 005132 366 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF 437 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~-~~g~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~ 437 (713)
+.|.|+|++|++|+..+ ..+.+||||++++ +...++|+++ ++.||+|||.|.|.+... ...|.|+|||++..
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~ 93 (123)
T cd08390 14 EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRF 93 (123)
T ss_pred CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcC
Confidence 48999999999999888 6789999999998 3457899999 999999999999997653 46899999999887
Q ss_pred -CCceeEEEEEeccccccCCeeeeeeece
Q 005132 438 -GDENMGSARVNLEGLVEGSVRDIWVPLE 465 (713)
Q Consensus 438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 465 (713)
++++||++.++|.++........|++|+
T Consensus 94 ~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 94 SRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 7899999999999999888888999986
No 158
>PLN03008 Phospholipase D delta
Probab=99.55 E-value=3.4e-14 Score=161.17 Aligned_cols=97 Identities=23% Similarity=0.385 Sum_probs=86.0
Q ss_pred CCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeE
Q 005132 516 GTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKW 592 (713)
Q Consensus 516 g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w 592 (713)
+++||||+|.++++ ..||+++++++||+|||+|.|++. ...|.|+|+|+|.++ +++||++.|||.++..+.....|
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~W 153 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGW 153 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEE
Confidence 57899999999876 459999999999999999999984 578999999999997 57999999999999999999999
Q ss_pred EEcCC------CCCcEEEEEEEEEecCC
Q 005132 593 IPLQG------VRKGEIHVLITRKVPEL 614 (713)
Q Consensus 593 ~~L~~------~~~G~i~~~l~~~~p~~ 614 (713)
++|.+ +.+|+|+++++| .|-.
T Consensus 154 l~Ll~~~~kp~k~~~kl~v~lqf-~pv~ 180 (868)
T PLN03008 154 FPVLGASGKPPKAETAIFIDMKF-TPFD 180 (868)
T ss_pred EEccccCCCCCCCCcEEEEEEEE-EEcc
Confidence 99963 235899999999 6643
No 159
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=2.7e-14 Score=128.07 Aligned_cols=100 Identities=26% Similarity=0.392 Sum_probs=88.0
Q ss_pred CCCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCCCCceeEEEEEeccccccC-Ce
Q 005132 382 DKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVEG-SV 457 (713)
Q Consensus 382 ~~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~-~~ 457 (713)
..+|.+||||+++++++ .++|+++ ++.||.|||.|.|.+.+. ...|.|+|+|++..+|++||.+.++|+++... ..
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence 45688999999999774 6899999 999999999999998775 67899999999887899999999999998654 44
Q ss_pred eeeeeeceecccceEEEEEEEEee
Q 005132 458 RDIWVPLEKVNTGELRLQIEATRV 481 (713)
Q Consensus 458 ~~~w~~L~~~~~G~I~l~l~~~~~ 481 (713)
...|++|.+...|+|++++.|.|+
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEecC
Confidence 679999998788999999999864
No 160
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.54 E-value=6.2e-14 Score=128.48 Aligned_cols=102 Identities=27% Similarity=0.430 Sum_probs=92.8
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-C-CCCCccceEEEEEEeCC----CceEEEEEEEecCC-C
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG----GECLMVKCYNEEIF-G 438 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~-t~nP~wne~f~f~v~~~----~~~l~i~V~d~~~~-~ 438 (713)
|.|.|+|++|++|+..+..+.+||||++.+++..++|++. + +.||.||++|.|.+..+ ...|.|+|||++.+ +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 5799999999999988888999999999999888999988 4 89999999999998776 57899999999888 8
Q ss_pred CceeEEEEEeccccccCCeeeeeeeceec
Q 005132 439 DENMGSARVNLEGLVEGSVRDIWVPLEKV 467 (713)
Q Consensus 439 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 467 (713)
+++||.+.+++.++..+...+.|+.|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999987778899999875
No 161
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.54 E-value=5.4e-14 Score=130.19 Aligned_cols=106 Identities=32% Similarity=0.505 Sum_probs=93.9
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC--CceEEEEEEEecCC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF 437 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~ 437 (713)
+.|.|+|++|++|+..+..+.+||||++.+. ...++|+++ ++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 4899999999999988888899999999994 368999999 999999999999997654 56899999999877
Q ss_pred -CCceeEEEEEeccccccCCeeeeeeeceecccceE
Q 005132 438 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGEL 472 (713)
Q Consensus 438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~I 472 (713)
++++||.+.++++++... ....||+|.+...|+.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 889999999999999855 6678999998888865
No 162
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.54 E-value=4.4e-14 Score=126.77 Aligned_cols=97 Identities=20% Similarity=0.377 Sum_probs=86.0
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC-----CceEEEEEEEecCC-C
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF-G 438 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~-----~~~l~i~V~d~~~~-~ 438 (713)
+.|+|+|++|++|. .|.+||||+++++++.++|+++ ++.||.|||+|.|.+..+ ...|.|+|||++.+ +
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~ 79 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS 79 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccccc
Confidence 57999999999998 5789999999999999999999 999999999999997543 46899999999987 7
Q ss_pred CceeEEEEEeccccccCC---eeeeeeecee
Q 005132 439 DENMGSARVNLEGLVEGS---VRDIWVPLEK 466 (713)
Q Consensus 439 d~~lG~~~i~l~~l~~~~---~~~~w~~L~~ 466 (713)
+++||.+.+++.++..+. ....|++|.+
T Consensus 80 ~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 80 DTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 899999999999997654 3578999875
No 163
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.53 E-value=3.8e-14 Score=130.06 Aligned_cols=108 Identities=24% Similarity=0.364 Sum_probs=93.1
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eEEeccCC--CCCCCccceEEEEEEeCC-----CceEEEEEEEecCC-
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA--HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF- 437 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-~~~kT~~~--~t~nP~wne~f~f~v~~~-----~~~l~i~V~d~~~~- 437 (713)
+|.|+|++|++|+..+..+.+||||++++++ ..++|++. ++.||.|||.|.|.+... ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3899999999999888889999999999987 88999997 589999999999998776 68999999999886
Q ss_pred CCceeEEEEEeccccccCCe-----eeeeeeceec---ccceEEE
Q 005132 438 GDENMGSARVNLEGLVEGSV-----RDIWVPLEKV---NTGELRL 474 (713)
Q Consensus 438 ~d~~lG~~~i~l~~l~~~~~-----~~~w~~L~~~---~~G~I~l 474 (713)
+|++||.+.+++.++..+.. ...||+|... ..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 89999999999999986553 4689999853 3566653
No 164
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4.8e-15 Score=149.17 Aligned_cols=202 Identities=27% Similarity=0.358 Sum_probs=165.1
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC----C-eEEeccCC-CCCCCccceEEEEEEeC--C--CceEEEEEEEec
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG----K-IVQRTRTA-HSPNHVWNQKFELDEIG--G--GECLMVKCYNEE 435 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~----~-~~~kT~~~-~t~nP~wne~f~f~v~~--~--~~~l~i~V~d~~ 435 (713)
..+..++.+|++|.+++.++..|||++..+. + ..++|++. ++.||.|+|+....... + ...+++.|.|.+
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence 3789999999999999999999999999883 1 25888899 99999999887665332 2 457788888888
Q ss_pred CC-CCceeEEEEEeccccccCCe--eeeeeece----e------cccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEE
Q 005132 436 IF-GDENMGSARVNLEGLVEGSV--RDIWVPLE----K------VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELV 502 (713)
Q Consensus 436 ~~-~d~~lG~~~i~l~~l~~~~~--~~~w~~L~----~------~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~ 502 (713)
.+ .++++|+..+++..+..... -..|+.-. . ...|+|.+++.|. .....+.|.
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--------------s~~~~l~vt 238 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS--------------STTPGLIVT 238 (362)
T ss_pred ccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC--------------cCCCceEEE
Confidence 88 88999999999888875443 12333211 1 2368999999876 677889999
Q ss_pred EEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCe
Q 005132 503 IVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSS 572 (713)
Q Consensus 503 v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~ 572 (713)
++++..|.+.|.+|.+||||..++.. .+++|.+.++|+||.||+.|.|.+. ...+.|.|||++.....++
T Consensus 239 ~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~ 318 (362)
T KOG1013|consen 239 IIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDS 318 (362)
T ss_pred EEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccC
Confidence 99999999999999999999999954 3679999999999999999999973 6789999999998878889
Q ss_pred eEEEEEEce
Q 005132 573 IGDCVVEYQ 581 (713)
Q Consensus 573 iG~~~i~L~ 581 (713)
+|-+...+.
T Consensus 319 ~GG~~~g~~ 327 (362)
T KOG1013|consen 319 IGGSMLGGY 327 (362)
T ss_pred CCccccccc
Confidence 987766543
No 165
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.52 E-value=1.5e-13 Score=127.94 Aligned_cols=112 Identities=18% Similarity=0.383 Sum_probs=95.2
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeE-EeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecC-C----C
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEI-F----G 438 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~-~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~-~----~ 438 (713)
..|.|.|++|++|+.++ +|||+|.+++.. .||+++ ++.||.|+|.|.|....+...+.|.||..+. . +
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccC
Confidence 37999999999998764 799999998875 699999 9999999999999866667789999976542 2 5
Q ss_pred CceeEEEEEeccccccCCeeeeeeeceecc-------------cceEEEEEEEEeec
Q 005132 439 DENMGSARVNLEGLVEGSVRDIWVPLEKVN-------------TGELRLQIEATRVD 482 (713)
Q Consensus 439 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-------------~G~I~l~l~~~~~~ 482 (713)
+.+||.+.|+++++..+...+.||+|.+.. .+.|+++++|.++.
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 789999999999999888899999997532 26899999998653
No 166
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.52 E-value=8e-14 Score=127.62 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=76.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCcE---EEEeecCCCCCCcccceEEEEEe
Q 005132 174 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL---TRRTDARPGSDPRWDSMFNMVLH 250 (713)
Q Consensus 174 vL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~~---~~tt~i~~~~nP~WnEtf~~~v~ 250 (713)
+|+|+|++|++|+..+..|++ ||||+|.++.. .+|+.++++.||+|||+|.|.+.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~----------------------DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~ 58 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKS----------------------DPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT 58 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCC----------------------CcEEEEEECCeeccceeeEEECCCCCccceEEEEEec
Confidence 589999999999988876654 99999999743 46777889999999999999986
Q ss_pred cC-CceEEEEEEEeCCCCCccceeEEEEEEccccc
Q 005132 251 EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 284 (713)
Q Consensus 251 ~~-~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~ 284 (713)
.. .+.|.|+|||+|. ..++++||++.++|++..
T Consensus 59 ~~~~~~L~~~V~d~d~-~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 59 LPGNSILKISVMDYDL-LGSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCCCCEEEEEEEECCC-CCCCceeEEEEEeecccc
Confidence 55 6799999999997 368899999999999866
No 167
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.51 E-value=3.1e-13 Score=127.15 Aligned_cols=112 Identities=24% Similarity=0.309 Sum_probs=93.8
Q ss_pred EEEEEEEeEc--CCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEEeCC---------CceEEEE
Q 005132 368 INVTVVEGKD--LMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG---------GECLMVK 430 (713)
Q Consensus 368 L~V~I~~a~~--L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v~~~---------~~~l~i~ 430 (713)
..++|..|++ |+..+..+.+||||++++ +.+.+||+++ +|.||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4566677777 677777889999999987 2468999999 999999999999998544 3579999
Q ss_pred EEEecCC--CCceeEEEEEeccccccCCeeeeeeeceec---ccceEEEEEEEE
Q 005132 431 CYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEKV---NTGELRLQIEAT 479 (713)
Q Consensus 431 V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~---~~G~I~l~l~~~ 479 (713)
|||++.+ +|++||++.++|+.+..+.....|++|... ..|+|.+++...
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLR 137 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEec
Confidence 9999986 799999999999999887777779998742 268999999876
No 168
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.50 E-value=2.1e-13 Score=123.16 Aligned_cols=100 Identities=30% Similarity=0.500 Sum_probs=90.0
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCceeE
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 443 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~lG 443 (713)
|.|+|++|++|+..+..+.+||||++.+++ ..++|+++ ++.+|.|||+|.|.+... ...+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 578999999999888888999999999964 56899999 999999999999998764 67899999999887 799999
Q ss_pred EEEEeccccccCCeeeeeeeceec
Q 005132 444 SARVNLEGLVEGSVRDIWVPLEKV 467 (713)
Q Consensus 444 ~~~i~l~~l~~~~~~~~w~~L~~~ 467 (713)
++.+++.++..+.....|++|...
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCC
Confidence 999999999888888899999864
No 169
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.49 E-value=1.3e-13 Score=127.84 Aligned_cols=99 Identities=18% Similarity=0.293 Sum_probs=82.4
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCe--EEeccCC-CCCCCccceEEEEEEeC---CCceEEEEEEEecC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKI--VQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI 436 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~~--~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~ 436 (713)
+.|.|+|++|+||+..+..|.+||||++++ ++. +.||+++ ++.||+|||+|.|.+.. ....|.|+|||++.
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~ 94 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE 94 (136)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC
Confidence 379999999999999888899999999999 222 6789999 99999999999999765 36789999999998
Q ss_pred C-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132 437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK 466 (713)
Q Consensus 437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 466 (713)
+ ++++||++.+.... .+...+.|..+..
T Consensus 95 ~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 95 DGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred CCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 7 89999999997664 3444456665543
No 170
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.48 E-value=3.5e-13 Score=124.11 Aligned_cols=109 Identities=24% Similarity=0.347 Sum_probs=91.8
Q ss_pred ceEEEEEEEccCccccc--cCCCCCcEEEEEEC------CeEEEEEeeeCCC-CCeeeeEEEEecC---CCeEEEEEEEC
Q 005132 497 GWIELVIVEARDLVAAD--LRGTSDPYVKVQYG------DLKKRTKVIFKTL-NPQWHQTLEFPDD---GSPLTLHVRDH 564 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d--~~g~~DPyv~v~~~------~~~~kT~v~~~t~-nP~wne~~~f~v~---~~~l~i~V~D~ 564 (713)
..|+|+|++|++|+..+ ..+..||||++++. ..+++|+++.++. ||.|||+|.|.+. ...|.++|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 46899999999999887 57889999999993 4568999988775 9999999999963 34699999999
Q ss_pred CCCCCCCeeEEEEEEceecCCCCceeeEEEcCC-----CCCcEEEEEEEE
Q 005132 565 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITR 609 (713)
Q Consensus 565 d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~-----~~~G~i~~~l~~ 609 (713)
+.. ++++||++.++++++..+ ..|++|.+ ...|.|.+.+++
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 988 899999999999999655 46888853 345899988875
No 171
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.48 E-value=1.5e-13 Score=127.87 Aligned_cols=100 Identities=26% Similarity=0.529 Sum_probs=89.5
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEC----CeEEeccCC-CCCCCccceEEEEEEeCC----------------Cce
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIGG----------------GEC 426 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~----~~~~kT~~~-~t~nP~wne~f~f~v~~~----------------~~~ 426 (713)
|.|+|++|++|+.+ ..+.+||||+++++ ...++|+++ ++.||.|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57899999999887 78899999999997 778999999 999999999999997653 468
Q ss_pred EEEEEEEecCC-CCceeEEEEEeccccccCCeeeeeeeceecc
Q 005132 427 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN 468 (713)
Q Consensus 427 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 468 (713)
|.|+|||++.. ++++||++.+++.++........||+|....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 99999999988 8999999999999998777788999998753
No 172
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.48 E-value=3.6e-13 Score=121.97 Aligned_cols=105 Identities=29% Similarity=0.473 Sum_probs=84.6
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-CCce
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDEN 441 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~d~~ 441 (713)
|.|+|++|++|+.. +.+||||+++++++ .++|+++ + .||.|||+|.|.+... ...|.|.+||.+.. ++..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999875 78999999999875 5899999 9 9999999999998763 46788888888765 5556
Q ss_pred eEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEEE
Q 005132 442 MGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA 478 (713)
Q Consensus 442 lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~ 478 (713)
+|.+. +..+..+...+.||+|.+.. .|+|++++.|
T Consensus 78 ~g~v~--l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVA--LSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEE--ecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 66555 44555566678999998643 6999998865
No 173
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.48 E-value=1.9e-13 Score=121.44 Aligned_cols=78 Identities=19% Similarity=0.358 Sum_probs=64.6
Q ss_pred EEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC------cEEEEeecCCCCCCcccceEEEE
Q 005132 175 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDSMFNMV 248 (713)
Q Consensus 175 L~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g------~~~~tt~i~~~~nP~WnEtf~~~ 248 (713)
|.|+|++|++|++ .+ ||||++++. ...+|+++++++||+|||+|.|.
T Consensus 1 L~V~V~~A~~L~~-----~s----------------------DPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~ 53 (118)
T cd08686 1 LNVIVHSAQGFKQ-----SA----------------------NLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE 53 (118)
T ss_pred CEEEEEeCCCCCC-----CC----------------------CCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE
Confidence 6799999999963 22 999999993 24788889999999999999999
Q ss_pred EecCCceEEEEEEEeC-------CCCCccceeEEEEEEcc
Q 005132 249 LHEETGTVRFNLYECI-------PGHVKYDYLTSCEVKMK 281 (713)
Q Consensus 249 v~~~~~~L~~~v~d~d-------~~~~~dd~lG~~~i~l~ 281 (713)
+.+ .+.|++.|||++ . ..+|+++|++.+.|.
T Consensus 54 l~~-s~~L~~~v~d~~~~~~~~d~-~~~d~~~G~g~i~Ld 91 (118)
T cd08686 54 LEG-SQTLRILCYEKCYSKVKLDG-EGTDAIMGKGQIQLD 91 (118)
T ss_pred eCC-CCEEEEEEEEcccccccccc-cCcccEEEEEEEEEC
Confidence 964 789999999983 3 257889988877664
No 174
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.47 E-value=7.8e-13 Score=122.54 Aligned_cols=89 Identities=13% Similarity=0.232 Sum_probs=72.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC--------------cEEEEeecCCCCCC
Q 005132 174 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--------------ELTRRTDARPGSDP 239 (713)
Q Consensus 174 vL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g--------------~~~~tt~i~~~~nP 239 (713)
+..|++++|++|+ .+..|++ ||||++.+. +..+|.+++++.||
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~----------------------DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 58 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNP----------------------DPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINP 58 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCC----------------------CceEEEEEECCCcccccccccccceeeeeeEcCCCCC
Confidence 5689999999998 5555544 999999993 24677778899999
Q ss_pred cc-cceEEEEEecCCceEEEEEEEeCCCCC--ccceeEEEEEEcccccCC
Q 005132 240 RW-DSMFNMVLHEETGTVRFNLYECIPGHV--KYDYLTSCEVKMKYVADD 286 (713)
Q Consensus 240 ~W-nEtf~~~v~~~~~~L~~~v~d~d~~~~--~dd~lG~~~i~l~~l~~~ 286 (713)
+| ||+|.|.+. .++.|.++|||++.... .+|+||.+.+++.++...
T Consensus 59 ~W~nE~f~f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~ 107 (137)
T cd08691 59 VWHREQFVFVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLER 107 (137)
T ss_pred ceEceEEEEEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhccc
Confidence 99 999999984 46799999999874211 278999999999999864
No 175
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.47 E-value=1.6e-13 Score=127.23 Aligned_cols=97 Identities=21% Similarity=0.332 Sum_probs=79.8
Q ss_pred cEEEEEEEEeEcCCCCCC--CCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEe
Q 005132 366 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNE 434 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~--~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~ 434 (713)
+.|.|.|++|+||...+. .+.+||||+|++.. .+.||+++ ++.||+|||.|.|.+... ...|.|+|||+
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~ 94 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQ 94 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeC
Confidence 489999999999998873 35599999999831 26789999 999999999999998763 67899999999
Q ss_pred cCC-CCceeEEEEEeccccccCCeeeeeeec
Q 005132 435 EIF-GDENMGSARVNLEGLVEGSVRDIWVPL 464 (713)
Q Consensus 435 ~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L 464 (713)
+.+ ++++||++.+++.. .+.+...|..+
T Consensus 95 d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 95 DSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred CCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 988 89999999999975 34344455544
No 176
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.47 E-value=1e-13 Score=171.27 Aligned_cols=114 Identities=18% Similarity=0.358 Sum_probs=101.4
Q ss_pred CCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC----CCeEEEEEEECCCC
Q 005132 493 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLHVRDHNAL 567 (713)
Q Consensus 493 ~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i~V~D~d~~ 567 (713)
..-.|.|+|+|++|+||. +..|.+||||++.++++ ++||++++++.||+|||+|.|.++ +..|+|+|||+|.+
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 355699999999999998 45689999999999965 889999999999999999997763 35799999999999
Q ss_pred CCCCeeEEEEEEceecCCCCceeeEEEcCC--CCCcE---EEEEEEE
Q 005132 568 LASSSIGDCVVEYQRLPPNQMADKWIPLQG--VRKGE---IHVLITR 609 (713)
Q Consensus 568 ~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~---i~~~l~~ 609 (713)
++| .||++.|+|.++..+.....||+|.+ .+.|. |++.|.|
T Consensus 2054 ~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w 2099 (2102)
T PLN03200 2054 GKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQW 2099 (2102)
T ss_pred CCC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEe
Confidence 655 99999999999999999999999985 56799 9999887
No 177
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.47 E-value=5.3e-13 Score=123.85 Aligned_cols=89 Identities=19% Similarity=0.417 Sum_probs=79.6
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-------CeEEeccCC-CCCCCccceEEEEEEeCC-----CceEEEEEE
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-------KIVQRTRTA-HSPNHVWNQKFELDEIGG-----GECLMVKCY 432 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-------~~~~kT~~~-~t~nP~wne~f~f~v~~~-----~~~l~i~V~ 432 (713)
+.|.|+|++|++|+..+..+.+||||+|++. ...++|+++ ++.||+|||+|.|.+... ...|.|+||
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 3799999999999998888999999999984 347999999 999999999999997652 468999999
Q ss_pred EecCC-CCceeEEEEEecccccc
Q 005132 433 NEEIF-GDENMGSARVNLEGLVE 454 (713)
Q Consensus 433 d~~~~-~d~~lG~~~i~l~~l~~ 454 (713)
|++.. ++++||++.++|+++..
T Consensus 96 d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 96 DYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ecCCCCCCcEeEEEEEeHHHCCc
Confidence 99988 69999999999999874
No 178
>PLN03008 Phospholipase D delta
Probab=99.47 E-value=3.2e-13 Score=153.45 Aligned_cols=99 Identities=21% Similarity=0.444 Sum_probs=89.7
Q ss_pred CCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeEEEEEeccccccCCeeeeee
Q 005132 385 GKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWV 462 (713)
Q Consensus 385 g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~ 462 (713)
+.+||||+|.++++ +.||+++ ++.||+|||+|.|.+..+...|.|+|||++.+++++||.+.||++++..+...+.|+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl 154 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWF 154 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEE
Confidence 46799999999765 6799999 999999999999999888889999999999998899999999999999999999999
Q ss_pred eceec------ccceEEEEEEEEeecC
Q 005132 463 PLEKV------NTGELRLQIEATRVDD 483 (713)
Q Consensus 463 ~L~~~------~~G~I~l~l~~~~~~~ 483 (713)
+|.+. ..|+|+++++|.|+..
T Consensus 155 ~Ll~~~~kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 155 PVLGASGKPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred EccccCCCCCCCCcEEEEEEEEEEccc
Confidence 99763 2579999999999754
No 179
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.47 E-value=2.7e-13 Score=121.49 Aligned_cols=86 Identities=26% Similarity=0.407 Sum_probs=75.4
Q ss_pred EEEEEEccCccccccCCCCCcEEEEEECCe------EEEEEeeeCCCCCeeeeEEEEecC-------CCeEEEEEEECCC
Q 005132 500 ELVIVEARDLVAADLRGTSDPYVKVQYGDL------KKRTKVIFKTLNPQWHQTLEFPDD-------GSPLTLHVRDHNA 566 (713)
Q Consensus 500 ~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~------~~kT~v~~~t~nP~wne~~~f~v~-------~~~l~i~V~D~d~ 566 (713)
.+..++|++|+..+..|.+||||++++.+. .++|+++++|+||+|| +|.|+.. ...|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345679999999999999999999998543 5899999999999999 6888751 5789999999999
Q ss_pred CCCCCeeEEEEEEceecCCC
Q 005132 567 LLASSSIGDCVVEYQRLPPN 586 (713)
Q Consensus 567 ~~~d~~iG~~~i~L~~l~~~ 586 (713)
+++|++||++.++++++..+
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 99999999999999999744
No 180
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.46 E-value=3e-13 Score=126.03 Aligned_cols=99 Identities=24% Similarity=0.384 Sum_probs=85.5
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CC---eEEeccCC-CCCCCccceEEEEEEeC---CCceEEEEEEEecC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI 436 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~---~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~ 436 (713)
+.|.|+|++|++|+..+..|.+||||++++ ++ ..++|+++ ++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~ 94 (136)
T cd08404 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence 479999999999999998899999999998 22 26789999 99999999999999765 35679999999998
Q ss_pred C-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132 437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK 466 (713)
Q Consensus 437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 466 (713)
+ ++++||.+.+++.. .+.....|++|..
T Consensus 95 ~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 95 VTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 8 89999999999998 3455678888865
No 181
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.45 E-value=3.3e-13 Score=125.21 Aligned_cols=88 Identities=15% Similarity=0.262 Sum_probs=75.2
Q ss_pred ccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC------cEEEEeecCCCCCCcccceE
Q 005132 172 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDSMF 245 (713)
Q Consensus 172 ~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g------~~~~tt~i~~~~nP~WnEtf 245 (713)
.|.|.|+|++|++|+..+..|.+ ||||+|.+. ...+|++++++.||+|||+|
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~----------------------DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f 69 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYS----------------------DPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEF 69 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCC----------------------CcEEEEEEEcCCCccCCceeeeEeccCCCCcccEE
Confidence 49999999999999988866643 999999994 24567778899999999999
Q ss_pred EEEEecC---CceEEEEEEEeCCCCCccceeEEEEEEccc
Q 005132 246 NMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY 282 (713)
Q Consensus 246 ~~~v~~~---~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~ 282 (713)
.|.+... ...|.|+|||+|.. .++++||.+.+++..
T Consensus 70 ~f~~~~~~l~~~~l~~~V~d~d~~-~~~~~lG~~~i~l~~ 108 (133)
T cd08384 70 FYDIKHSDLAKKTLEITVWDKDIG-KSNDYIGGLQLGINA 108 (133)
T ss_pred EEECCHHHhCCCEEEEEEEeCCCC-CCccEEEEEEEecCC
Confidence 9998654 46899999999973 688999999999975
No 182
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.45 E-value=9.3e-13 Score=120.74 Aligned_cols=108 Identities=25% Similarity=0.405 Sum_probs=89.5
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeE
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 443 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG 443 (713)
.|.|+|.+|+ |...+..+.+||||+++++++ .++|+++ ++.||.|||.|.|.+. ....|.|+|||++.. .+++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence 6999999999 544555788999999999877 8999999 9999999999999964 567899999999988 899999
Q ss_pred EEEEeccccccCCe-----eeeeeeceecc------cceEEEEE
Q 005132 444 SARVNLEGLVEGSV-----RDIWVPLEKVN------TGELRLQI 476 (713)
Q Consensus 444 ~~~i~l~~l~~~~~-----~~~w~~L~~~~------~G~I~l~l 476 (713)
.+.+++.++..... ...|+++.... .|+|.+.+
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999885432 23588886433 57777764
No 183
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.45 E-value=1.3e-12 Score=119.56 Aligned_cols=99 Identities=26% Similarity=0.426 Sum_probs=84.7
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC----CceEEEEEEEec
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEE 435 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~~ 435 (713)
+.|.|+|++|++|+..+..+.+||||++++. ...++|+++ ++.||.||++|.|..... ...+.|+|||++
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~ 94 (123)
T cd04035 15 SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDED 94 (123)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcC
Confidence 4899999999999988888999999999982 247899999 999999999999964332 468999999998
Q ss_pred CCCCceeEEEEEeccccccCCeeeeeeec
Q 005132 436 IFGDENMGSARVNLEGLVEGSVRDIWVPL 464 (713)
Q Consensus 436 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 464 (713)
..++++||.+.++++++..+.....|+.|
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 95 RFGNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred CcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence 77889999999999999887776666543
No 184
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.45 E-value=3.5e-13 Score=125.55 Aligned_cols=99 Identities=19% Similarity=0.352 Sum_probs=83.6
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CC---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 436 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~ 436 (713)
+.|.|+|++|+||+..+..|.+||||++++ ++ ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~ 94 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC
Confidence 589999999999998888899999999998 32 36789999 999999999999997542 4689999999998
Q ss_pred C-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132 437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK 466 (713)
Q Consensus 437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 466 (713)
. ++++||.+.+++.+. +.....|+++-.
T Consensus 95 ~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 95 LSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred CCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 8 789999999999885 444556766654
No 185
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.44 E-value=4.1e-13 Score=124.70 Aligned_cols=101 Identities=22% Similarity=0.407 Sum_probs=88.4
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 436 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~ 436 (713)
+.|.|+|++|++|+..+..+.+||||++++.. ..++|+++ ++.||.|||+|.|.+... ...|.|+|||.+.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 93 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS 93 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC
Confidence 48999999999999888888999999999842 26799999 999999999999997664 5789999999988
Q ss_pred C-CCceeEEEEEeccccccCCeeeeeeeceecc
Q 005132 437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN 468 (713)
Q Consensus 437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 468 (713)
. ++++||.+.+++++ .+...+.|++|...+
T Consensus 94 ~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 94 VGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred CCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 6 88999999999999 555678899988754
No 186
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.44 E-value=4.5e-13 Score=124.78 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=74.7
Q ss_pred cccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCc-------EEEEeecCCCCCCcccc
Q 005132 171 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-------LTRRTDARPGSDPRWDS 243 (713)
Q Consensus 171 ~~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~-------~~~tt~i~~~~nP~WnE 243 (713)
..|.|.|+|++|+||+..+..|.+ ||||++.+.+ ..+|++++++.||+|||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~----------------------dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnE 70 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAP----------------------DTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKE 70 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCC----------------------CeeEEEEEEeCCCcceeeccceeecCCCCCcEee
Confidence 349999999999999988876644 9999999931 23566678999999999
Q ss_pred eEEEEEecC---CceEEEEEEEeCCCCCccceeEEEEEEcccc
Q 005132 244 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV 283 (713)
Q Consensus 244 tf~~~v~~~---~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l 283 (713)
+|.|.+... +..|.|.|||++. ..++++||.+.+++...
T Consensus 71 tF~f~i~~~~l~~~~L~~~V~~~~~-~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 71 TFVFQVALFQLSEVTLMFSVYNKRK-MKRKEMIGWFSLGLNSS 112 (138)
T ss_pred eEEEECCHHHhCccEEEEEEEECCC-CCCCcEEEEEEECCcCC
Confidence 999998753 4699999999998 47899999999887653
No 187
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.44 E-value=4.7e-13 Score=124.72 Aligned_cols=100 Identities=21% Similarity=0.341 Sum_probs=84.0
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--C---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 436 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~ 436 (713)
+.|.|+|++|++|+..+..|.+||||+|++. + ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 94 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR 94 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 5899999999999998989999999999993 2 36789988 999999999999997643 3489999999998
Q ss_pred C-CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132 437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 467 (713)
Q Consensus 437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 467 (713)
+ ++++||.+.+++... +.....|+++-..
T Consensus 95 ~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 95 IGKNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred CCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 8 789999999999763 3445667776543
No 188
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.42 E-value=8e-13 Score=122.89 Aligned_cols=87 Identities=20% Similarity=0.325 Sum_probs=70.9
Q ss_pred ccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEe--Cc----EEEEeecCCCCCCcccceE
Q 005132 172 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EE----LTRRTDARPGSDPRWDSMF 245 (713)
Q Consensus 172 ~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~--g~----~~~tt~i~~~~nP~WnEtf 245 (713)
.|.|.|+|++|++|+..+..|.+ ||||+|.+ +. ..+|.+++++.||+|||+|
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~----------------------DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F 70 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGS----------------------DPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESF 70 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCC----------------------CeEEEEEEEcCCcccceEcCccccCCCCCccceeE
Confidence 38999999999999988876643 99999998 21 2456667899999999999
Q ss_pred EEEEecC---CceEEEEEEEeCCCCCccceeEEEEEEcc
Q 005132 246 NMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMK 281 (713)
Q Consensus 246 ~~~v~~~---~~~L~~~v~d~d~~~~~dd~lG~~~i~l~ 281 (713)
.|.+... ...|.|+|||+|.. .++++||.+.+...
T Consensus 71 ~f~i~~~~l~~~~l~~~V~d~d~~-~~~~~iG~~~l~~~ 108 (135)
T cd08410 71 SFKVPQEELENVSLVFTVYGHNVK-SSNDFIGRIVIGQY 108 (135)
T ss_pred EEeCCHHHhCCCEEEEEEEeCCCC-CCCcEEEEEEEcCc
Confidence 9998543 34799999999973 68999999986553
No 189
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.41 E-value=1.8e-13 Score=141.62 Aligned_cols=104 Identities=31% Similarity=0.506 Sum_probs=92.5
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEEeCC--CceEEEEEEEecCC-
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF- 437 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~- 437 (713)
.|.|+|.+|+||.++|.+|.+||||++.+ +..++||+++ .++||+|||+|.|..... ...|.|+|||+|+.
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 79999999999999999999999999999 3458999999 999999999999997664 77999999999998
Q ss_pred CCceeEEEEEeccccccCCeeeeeeeceecccce
Q 005132 438 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 471 (713)
Q Consensus 438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~ 471 (713)
+++++|..++.+++|+..+ .+.||.|-....|+
T Consensus 261 RNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 261 RNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE 293 (683)
T ss_pred cccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence 9999999999999997654 46899887655554
No 190
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.41 E-value=6.9e-13 Score=123.60 Aligned_cols=100 Identities=14% Similarity=0.226 Sum_probs=83.4
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--C---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 436 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~ 436 (713)
+.|.|+|++|+||+..+ .+.+||||++++. + ..++|+++ ++.||+|||+|.|.+... ...|.|+|||.+.
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~ 93 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG 93 (137)
T ss_pred CeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence 47999999999999888 7889999999983 2 36789999 999999999999998642 5789999999987
Q ss_pred C-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132 437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK 466 (713)
Q Consensus 437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 466 (713)
. ++++||++.++......+...+.|..+-.
T Consensus 94 ~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 94 VRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred CCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 7 89999999999766555555566766554
No 191
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.41 E-value=9.9e-13 Score=122.20 Aligned_cols=99 Identities=21% Similarity=0.393 Sum_probs=82.2
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--C---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 436 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~ 436 (713)
+.|.|+|++|++|+..+..|.+||||++++. + ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 14 ~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~ 93 (134)
T cd08403 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR 93 (134)
T ss_pred CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 5899999999999999989999999999983 2 36789988 999999999999987543 3479999999998
Q ss_pred C-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132 437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK 466 (713)
Q Consensus 437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 466 (713)
. ++++||.+.+++.. .+.....|+++-.
T Consensus 94 ~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 94 VGHNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred CCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 8 79999999999873 3334456776643
No 192
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.39 E-value=1.9e-12 Score=117.94 Aligned_cols=95 Identities=21% Similarity=0.317 Sum_probs=83.0
Q ss_pred EEEEeEcCCCCCCCCCCCcEEEEEECCe-------EEeccCC-CCCCCccceEEEEEEeC-CCceEEEEEEEecC----C
Q 005132 371 TVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEI----F 437 (713)
Q Consensus 371 ~I~~a~~L~~~~~~g~~dpyv~v~l~~~-------~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~----~ 437 (713)
-.++|++|+..+..|.+||||++++... .++|+++ ++.||.|||+|.|.+.. ....|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3479999999998899999999999443 5899999 99999999999998654 46789999999996 5
Q ss_pred -CCceeEEEEEeccccccCCeeeeeeece
Q 005132 438 -GDENMGSARVNLEGLVEGSVRDIWVPLE 465 (713)
Q Consensus 438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 465 (713)
++++||++.+++.++..+.....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 8999999999999999877777889884
No 193
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.39 E-value=3.3e-12 Score=116.82 Aligned_cols=98 Identities=15% Similarity=0.302 Sum_probs=78.5
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CC--eEEeccCC-CCC-CCccceEEEEEEeCC--CceEEEEEEEecC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSP-NHVWNQKFELDEIGG--GECLMVKCYNEEI 436 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~--~~~kT~~~-~t~-nP~wne~f~f~v~~~--~~~l~i~V~d~~~ 436 (713)
+.|.|+|++|+||++.+..+.+||||+|++ ++ .+.||+++ ++. ||+|||+|.|.+..+ ...+.|+|||++.
T Consensus 14 ~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~ 93 (135)
T cd08692 14 SRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS 93 (135)
T ss_pred CeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC
Confidence 589999999999998766677899999988 22 37889999 884 699999999998764 4578889999987
Q ss_pred C-CCceeEEEEEeccccccCCeeeeeeec
Q 005132 437 F-GDENMGSARVNLEGLVEGSVRDIWVPL 464 (713)
Q Consensus 437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L 464 (713)
. ++++||++.+..... .+...+.|...
T Consensus 94 ~~~n~~IG~v~lG~~~~-~~~~~~hW~~m 121 (135)
T cd08692 94 VRRKHFLGQVWISSDSS-SSEAVEQWKDT 121 (135)
T ss_pred CcCCceEEEEEECCccC-CchhhhhHHHH
Confidence 7 899999999999763 22223455544
No 194
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.38 E-value=1.1e-12 Score=162.39 Aligned_cols=113 Identities=20% Similarity=0.408 Sum_probs=102.7
Q ss_pred ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCC--CceEEEEEEEecCCCCc
Q 005132 365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIFGDE 440 (713)
Q Consensus 365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~~d~ 440 (713)
.|.|.|+|++|+||. +..|.+||||++.+|++ +.||+++ ++.||.|||.|+|.+.++ ...|.|+|||+|.++++
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd 2056 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS 2056 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC
Confidence 489999999999997 44789999999999966 8899999 999999999999887775 47899999999999777
Q ss_pred eeEEEEEeccccccCCeeeeeeecee--cccce---EEEEEEEE
Q 005132 441 NMGSARVNLEGLVEGSVRDIWVPLEK--VNTGE---LRLQIEAT 479 (713)
Q Consensus 441 ~lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~---I~l~l~~~ 479 (713)
.||.+.|++.++..+...+.||+|.+ .+.|+ |.+.+.|.
T Consensus 2057 ~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2057 SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 99999999999999999999999997 56899 99999996
No 195
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.7e-12 Score=139.35 Aligned_cols=115 Identities=30% Similarity=0.523 Sum_probs=100.9
Q ss_pred CCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCC-----
Q 005132 495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL----- 567 (713)
Q Consensus 495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~----- 567 (713)
-...+.++|++|++|.+.|..|.+||||.++++..+.+|+++...+||+|||.|.|.++ ...|.+.|||.|.-
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999996 56799999999852
Q ss_pred ------CCCCeeEEEEEEceecCCCCceeeEEEcCC-----CCCcEEEEEEEEEe
Q 005132 568 ------LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITRKV 611 (713)
Q Consensus 568 ------~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~-----~~~G~i~~~l~~~~ 611 (713)
..|+|+|+..|.+..+.. ..+.||+|.. ..+|.|++.|...+
T Consensus 373 rqkl~resddflgqtvievrtlsg--emdvwynlekrtdksavsgairlhisvei 425 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHISVEI 425 (1283)
T ss_pred HHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhhccceEEEEEEEEE
Confidence 358999999999888864 4689999963 45699999888854
No 196
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.34 E-value=4.3e-12 Score=107.34 Aligned_cols=79 Identities=35% Similarity=0.572 Sum_probs=72.6
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeeeeEEEEec---CCCeEEEEEEECCCCCCCCe
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPD---DGSPLTLHVRDHNALLASSS 572 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v---~~~~l~i~V~D~d~~~~d~~ 572 (713)
|+|+|++|+||+..+..+..||||++.+++ ..++|+++.++.+|.|||+|.|++ ....|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999987 679999999999999999999996 35669999999999999999
Q ss_pred eEEEE
Q 005132 573 IGDCV 577 (713)
Q Consensus 573 iG~~~ 577 (713)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99874
No 197
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.34 E-value=1.8e-11 Score=112.71 Aligned_cols=109 Identities=27% Similarity=0.442 Sum_probs=89.4
Q ss_pred EEEEEEEEeEcCCCCC--CCCCCCcEEEEEE------CCeEEeccCC-CCC-CCccceEEEEEEeCC-CceEEEEEEEec
Q 005132 367 KINVTVVEGKDLMPKD--KSGKCDPYVKLQY------GKIVQRTRTA-HSP-NHVWNQKFELDEIGG-GECLMVKCYNEE 435 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~--~~g~~dpyv~v~l------~~~~~kT~~~-~t~-nP~wne~f~f~v~~~-~~~l~i~V~d~~ 435 (713)
.|+|+|++|++|+..+ ..+..||||++++ +...++|+++ ++. ||.|||+|.|.+..+ ...|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 7999999999998877 5788999999999 2457899998 665 999999999998765 467999999998
Q ss_pred CCCCceeEEEEEeccccccCCeeeeeeeceec-----ccceEEEEEEE
Q 005132 436 IFGDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA 478 (713)
Q Consensus 436 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~I~l~l~~ 478 (713)
..++++||.+.++++++..+ ..|++|.+. ..|.|.+.++.
T Consensus 83 ~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 77889999999999999554 367787642 24677777653
No 198
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.33 E-value=6.3e-12 Score=114.94 Aligned_cols=92 Identities=26% Similarity=0.432 Sum_probs=78.7
Q ss_pred eEEEEEEEccCccccc--cCC--CCCcEEEEEECC---eEEEEEeeeCCCC--CeeeeEEEEecC---------------
Q 005132 498 WIELVIVEARDLVAAD--LRG--TSDPYVKVQYGD---LKKRTKVIFKTLN--PQWHQTLEFPDD--------------- 553 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d--~~g--~~DPyv~v~~~~---~~~kT~v~~~t~n--P~wne~~~f~v~--------------- 553 (713)
.|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.|+++++| |.||+.|.|++.
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 4899999999976543 355 499999999965 5789999999999 999999999852
Q ss_pred -----------CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCce
Q 005132 554 -----------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMA 589 (713)
Q Consensus 554 -----------~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~ 589 (713)
...|.++|||+|.+++|++||++.++|..+..+...
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~~ 127 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAKT 127 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccccc
Confidence 368999999999999999999999999988765443
No 199
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.29 E-value=1.6e-11 Score=109.86 Aligned_cols=85 Identities=20% Similarity=0.354 Sum_probs=69.7
Q ss_pred EEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC-c------EEEEeecCCCCCCcccceEEEEE
Q 005132 177 VRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-E------LTRRTDARPGSDPRWDSMFNMVL 249 (713)
Q Consensus 177 V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g-~------~~~tt~i~~~~nP~WnEtf~~~v 249 (713)
+-.++|++|+..+..|++ ||||+|++. + ..+|.+++++.||+|| +|.|.+
T Consensus 4 ~~~i~a~~L~~~d~~~~~----------------------DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~ 60 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKS----------------------DPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPL 60 (110)
T ss_pred EEEEEeCCCCCCCCCCCC----------------------CeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEH
Confidence 345689999988876654 999999983 2 3678888999999999 788875
Q ss_pred ecC-----CceEEEEEEEeCCCCCccceeEEEEEEcccccC
Q 005132 250 HEE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 285 (713)
Q Consensus 250 ~~~-----~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~ 285 (713)
.+. .+.|.|+|||+|. ..++++||++++++++|..
T Consensus 61 ~~l~~~~~~~~l~~~V~d~d~-~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 61 QKLCNGDYDRPIKIEVYDYDS-SGKHDLIGEFETTLDELLK 100 (110)
T ss_pred HHhcCCCcCCEEEEEEEEeCC-CCCCcEEEEEEEEHHHHhc
Confidence 432 5799999999997 4688999999999999984
No 200
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.27 E-value=1.3e-11 Score=139.63 Aligned_cols=249 Identities=23% Similarity=0.322 Sum_probs=174.7
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeE--EeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCc
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV--QRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDE 440 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~--~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~ 440 (713)
-.++|.+++|-+|...|.+|.+|||+.+.+|++. -++..+ +++||+|++-|++....+ ...+.++|||+|.. +|+
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~ 692 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDE 692 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccc
Confidence 4678999999999999999999999999999876 556667 999999999999997776 67889999999999 799
Q ss_pred eeEEEEEeccccccCC-----ee---------eeeeeceec--------c---------cceEEEEEEEEeecC------
Q 005132 441 NMGSARVNLEGLVEGS-----VR---------DIWVPLEKV--------N---------TGELRLQIEATRVDD------ 483 (713)
Q Consensus 441 ~lG~~~i~l~~l~~~~-----~~---------~~w~~L~~~--------~---------~G~I~l~l~~~~~~~------ 483 (713)
.+|+..++|+.-.... .. ..|..-.+. . .++. ..+.|....+
T Consensus 693 ~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d~~~ 771 (1105)
T KOG1326|consen 693 KIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYDEKE 771 (1105)
T ss_pred hhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhcccc
Confidence 9999999988633111 11 223221100 0 0111 1222221100
Q ss_pred ------------------------------------------------------------CC-CCCCCCCCCCCceEEEE
Q 005132 484 ------------------------------------------------------------NE-GSRGQNIGSGNGWIELV 502 (713)
Q Consensus 484 ------------------------------------------------------------~~-~~~~~~~~~~~~~L~v~ 502 (713)
.. +.......+....++|.
T Consensus 772 ~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrvi 851 (1105)
T KOG1326|consen 772 AKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVI 851 (1105)
T ss_pred cCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEE
Confidence 00 00112234666889999
Q ss_pred EEEccCccccccC----CCCCcEEEEEECC---eEEEEEeeeCCC--CCeeeeEEEEec---------------------
Q 005132 503 IVEARDLVAADLR----GTSDPYVKVQYGD---LKKRTKVIFKTL--NPQWHQTLEFPD--------------------- 552 (713)
Q Consensus 503 v~~a~~L~~~d~~----g~~DPyv~v~~~~---~~~kT~v~~~t~--nP~wne~~~f~v--------------------- 552 (713)
+..-.+....|.+ .++|-||+-.+.+ .+++|.++++++ .-.||-.|.|+.
T Consensus 852 iWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~d 931 (1105)
T KOG1326|consen 852 IWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLD 931 (1105)
T ss_pred EeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccccc
Confidence 9988888766543 3679999988754 478999999876 344665555542
Q ss_pred -----CCCeEEEEEEECCCCCCCCeeEEEEEEceecC----------------------CCCceeeEEEcCCC------C
Q 005132 553 -----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLP----------------------PNQMADKWIPLQGV------R 599 (713)
Q Consensus 553 -----~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~----------------------~~~~~~~w~~L~~~------~ 599 (713)
....|.|+|||.|.|++|+|||..+++|++.. .......|+|++.. -
T Consensus 932 ete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l 1011 (1105)
T KOG1326|consen 932 ETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVL 1011 (1105)
T ss_pred cccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCccee
Confidence 13569999999999999999999999988553 22345678888632 2
Q ss_pred CcEEEEEEEEEecCCcc
Q 005132 600 KGEIHVLITRKVPELDK 616 (713)
Q Consensus 600 ~G~i~~~l~~~~p~~~~ 616 (713)
.|.+.+++++ +.+.++
T Consensus 1012 ~Gkvem~lei-lt~~EA 1027 (1105)
T KOG1326|consen 1012 AGKVEMSLEI-LTEKEA 1027 (1105)
T ss_pred cceeeeehhh-hhhhhh
Confidence 4999999988 554443
No 201
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.25 E-value=4e-11 Score=103.86 Aligned_cols=97 Identities=39% Similarity=0.703 Sum_probs=87.8
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEECC-eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 574 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG 574 (713)
|.|.|++|++|......+..||||++.+.+ ...+|++..++.||.|||.|.|++. ...+.++|||++..+.+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468999999998877777899999999998 8899999999999999999999985 588999999999988889999
Q ss_pred EEEEEceecC-CCCceeeEEEc
Q 005132 575 DCVVEYQRLP-PNQMADKWIPL 595 (713)
Q Consensus 575 ~~~i~L~~l~-~~~~~~~w~~L 595 (713)
++.+++..+. .......|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999997 77778889875
No 202
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.2e-11 Score=132.90 Aligned_cols=113 Identities=36% Similarity=0.624 Sum_probs=98.5
Q ss_pred CCccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC----
Q 005132 363 RTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF---- 437 (713)
Q Consensus 363 ~~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~---- 437 (713)
+....+.++|.+|++|..+|..|.+||||.+.+++.+.+|+++ ..+||+|||.|.|.+.+....|++.|||.|.-
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHH
Confidence 3446899999999999999999999999999999999999999 99999999999999999999999999998742
Q ss_pred --------CCceeEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEE
Q 005132 438 --------GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIE 477 (713)
Q Consensus 438 --------~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~ 477 (713)
.|+++|+..|.++.+. ...+.||+|+.+. +|-|++.+.
T Consensus 372 lrqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhis 422 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHIS 422 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEE
Confidence 6899999999998873 3457899998742 576665554
No 203
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.24 E-value=3.9e-11 Score=101.38 Aligned_cols=80 Identities=18% Similarity=0.358 Sum_probs=66.2
Q ss_pred EEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCc----EEEEeecCCCCCCcccceEEEEEe
Q 005132 175 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE----LTRRTDARPGSDPRWDSMFNMVLH 250 (713)
Q Consensus 175 L~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~----~~~tt~i~~~~nP~WnEtf~~~v~ 250 (713)
|.|+|++|++|+..+..+.+ ||||++.++. ..+|+.++++.+|.|||+|.|.+.
T Consensus 1 L~v~I~~a~~L~~~~~~~~~----------------------~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~ 58 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKP----------------------DPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLD 58 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSB----------------------EEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEES
T ss_pred CEEEEEEEECCCCcccCCcc----------------------cccceeecceeeeeeeeeeeeeccccceeeeeeeeeee
Confidence 78999999999987654433 9999999942 366777889999999999999976
Q ss_pred cC-CceEEEEEEEeCCCCCccceeEEEE
Q 005132 251 EE-TGTVRFNLYECIPGHVKYDYLTSCE 277 (713)
Q Consensus 251 ~~-~~~L~~~v~d~d~~~~~dd~lG~~~ 277 (713)
.. .+.|.|+|||++.. .++++||+|.
T Consensus 59 ~~~~~~l~~~V~~~~~~-~~~~~iG~~~ 85 (85)
T PF00168_consen 59 DPDLDSLSFEVWDKDSF-GKDELIGEVK 85 (85)
T ss_dssp HGCGTEEEEEEEEETSS-SSEEEEEEEE
T ss_pred cccccceEEEEEECCCC-CCCCEEEEEC
Confidence 65 56799999999974 5688999974
No 204
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.4e-11 Score=124.42 Aligned_cols=213 Identities=16% Similarity=0.212 Sum_probs=148.5
Q ss_pred cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCc------EEEEeecCCCCCCcccceE-
Q 005132 173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTDARPGSDPRWDSMF- 245 (713)
Q Consensus 173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~------~~~tt~i~~~~nP~WnEtf- 245 (713)
-.+..||..|++|+..+..|. .|||++..+++ -.|+.+..++.||.|||+-
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~----------------------~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev 150 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGL----------------------ADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEV 150 (362)
T ss_pred hhcceeechhcccchhhhhhh----------------------cchHHhhhcccchhhhhhhhHHhhccCcCcceeccce
Confidence 468899999999999998774 39999999952 2456667899999999765
Q ss_pred -EEEEecC--CceEEEEEEEeCCCCCccceeEEEEEEcccccCCccceeecCCCCccccccccccCCeeeeeeccCCcce
Q 005132 246 -NMVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNS 322 (713)
Q Consensus 246 -~~~v~~~--~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (713)
.++..+. ...+++.|.|.+. ....+++|+..+.++.|...... ....|+++.-. .+-.-..+...+
T Consensus 151 ~~~i~~~~~~~K~~Rk~vcdn~~-~~~~~sqGq~r~~lkKl~p~q~k---------~f~~cl~~~lp-~~rad~~~~E~r 219 (362)
T KOG1013|consen 151 YEGITDDDTHLKVLRKVVCDNDK-KTHNESQGQSRVSLKKLKPLQRK---------SFNICLEKSLP-SERADRDEDEER 219 (362)
T ss_pred ecccccchhhhhhhheeeccCcc-cccccCcccchhhhhccChhhcc---------hhhhhhhccCC-cccccccchhhc
Confidence 4555554 4688999999887 46778999999988887642110 00011110000 000000001123
Q ss_pred eeEEEEEEEeeeccCCCCCCCCCCcCCCCcccccCCCcCcCCccEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----C
Q 005132 323 GELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----K 397 (713)
Q Consensus 323 G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~ 397 (713)
|++.+++.+ .+. ..-+.+++.+|..|...|.+|-+||||..++. .
T Consensus 220 g~i~isl~~-----------------------------~s~-~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~ 269 (362)
T KOG1013|consen 220 GAILISLAY-----------------------------SST-TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKK 269 (362)
T ss_pred cceeeeecc-----------------------------CcC-CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchh
Confidence 444333211 111 12589999999999999999999999999983 2
Q ss_pred eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-CCceeEEEEEe
Q 005132 398 IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVN 448 (713)
Q Consensus 398 ~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~d~~lG~~~i~ 448 (713)
-+.||.+. ++.+|.||+.|.|.+... ...+.|.|||++.. ..+.+|-+...
T Consensus 270 fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g 325 (362)
T KOG1013|consen 270 FKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLG 325 (362)
T ss_pred hcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccc
Confidence 37788888 999999999999997664 56899999999987 67777766554
No 205
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.17 E-value=2e-10 Score=99.77 Aligned_cols=94 Identities=35% Similarity=0.513 Sum_probs=82.1
Q ss_pred eEEEEEEEccCccccccCCCCCcEEEEEECCe---EEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCC
Q 005132 498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASS 571 (713)
Q Consensus 498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~---~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~ 571 (713)
.+.+.|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|++. ...|.|+|||++..+++.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 36899999999988876678899999999875 799999999999999999999983 588999999999888899
Q ss_pred eeEEEEEEceecCCCCceee
Q 005132 572 SIGDCVVEYQRLPPNQMADK 591 (713)
Q Consensus 572 ~iG~~~i~L~~l~~~~~~~~ 591 (713)
++|.+.+++.++..+.....
T Consensus 81 ~~G~~~~~l~~~~~~~~~~~ 100 (101)
T smart00239 81 FIGQVTIPLSDLLLGGRHEK 100 (101)
T ss_pred eeEEEEEEHHHcccCccccC
Confidence 99999999998876654433
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.10 E-value=6.3e-10 Score=96.22 Aligned_cols=97 Identities=34% Similarity=0.703 Sum_probs=85.6
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eEEeccCC-CCCCCccceEEEEEEeC-CCceEEEEEEEecCC-CCceeE
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDENMG 443 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~-~d~~lG 443 (713)
|.|.|++|++|......+..+|||.+.+.+ ..++|+++ ++.||.||+.|.|.+.. ....+.|+||+.+.. .+.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468999999998766677899999999987 89999999 99999999999999887 688999999999887 589999
Q ss_pred EEEEeccccc-cCCeeeeeeec
Q 005132 444 SARVNLEGLV-EGSVRDIWVPL 464 (713)
Q Consensus 444 ~~~i~l~~l~-~~~~~~~w~~L 464 (713)
.+.+++.++. .......|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999998 66667778765
No 207
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.03 E-value=1.6e-09 Score=94.03 Aligned_cols=91 Identities=30% Similarity=0.559 Sum_probs=79.9
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECC---eEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCce
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN 441 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~---~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~ 441 (713)
+.|.|++|++|......+..+|||++++.. ..++|+.+ ++.||.||+.|.|.+... ...|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 689999999998776657899999999965 48999999 888999999999998877 89999999999877 6899
Q ss_pred eEEEEEeccccccCCee
Q 005132 442 MGSARVNLEGLVEGSVR 458 (713)
Q Consensus 442 lG~~~i~l~~l~~~~~~ 458 (713)
+|.+.+++.++..+...
T Consensus 82 ~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 82 IGQVTIPLSDLLLGGRH 98 (101)
T ss_pred eEEEEEEHHHcccCccc
Confidence 99999999998766543
No 208
>PLN02223 phosphoinositide phospholipase C
Probab=99.02 E-value=2.3e-09 Score=117.87 Aligned_cols=111 Identities=16% Similarity=0.219 Sum_probs=87.1
Q ss_pred CceEEEEEEEccCcccc-----ccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecCC---CeEEEEEE
Q 005132 496 NGWIELVIVEARDLVAA-----DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHVR 562 (713)
Q Consensus 496 ~~~L~v~v~~a~~L~~~-----d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~~---~~l~i~V~ 562 (713)
...|.|+|+.|++++.. +.....||||+|.+.+ .+++|.+..++.||+|||+|.|++.. ..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999987521 2234579999999955 35678888889999999999999853 45799999
Q ss_pred ECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE
Q 005132 563 DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR 609 (713)
Q Consensus 563 D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~ 609 (713)
|+|..++|+|+|++.+|+..+..+- ++.+|.+.. .-.|++.+++
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 9999999999999999999998874 777885422 2455655554
No 209
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.00 E-value=1.4e-10 Score=126.86 Aligned_cols=102 Identities=27% Similarity=0.447 Sum_probs=92.4
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe-------EEEEEeeeCCCC
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLN 541 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~n 541 (713)
.|.+.+++.|. .....|.|.|+.|+++.+.|.+|.|||||.|.+++. .++|+|+++|+|
T Consensus 933 fg~lsvr~~y~--------------~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLn 998 (1103)
T KOG1328|consen 933 FGVLSVRAYYN--------------GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLN 998 (1103)
T ss_pred CCceEEEEEee--------------ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhcccc
Confidence 58888888887 566889999999999999999999999999999873 469999999999
Q ss_pred CeeeeEEEEecC-------CCeEEEEEEECCCCCCCCeeEEEEEEceecC
Q 005132 542 PQWHQTLEFPDD-------GSPLTLHVRDHNALLASSSIGDCVVEYQRLP 584 (713)
Q Consensus 542 P~wne~~~f~v~-------~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~ 584 (713)
|+|+|+|+|.|+ ...|.++|||||-.+.++|-|++.+.|.++.
T Consensus 999 PVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 999 PVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred chhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 999999999983 4579999999999999999999999998885
No 210
>PLN02270 phospholipase D alpha
Probab=98.97 E-value=3.8e-09 Score=120.71 Aligned_cols=119 Identities=18% Similarity=0.346 Sum_probs=102.8
Q ss_pred ccEEEEEEEEeEcCCCCC------------------CCCCCCcEEEEEECC-eEEeccCC-CC-CCCccceEEEEEEeCC
Q 005132 365 GRKINVTVVEGKDLMPKD------------------KSGKCDPYVKLQYGK-IVQRTRTA-HS-PNHVWNQKFELDEIGG 423 (713)
Q Consensus 365 ~g~L~V~I~~a~~L~~~~------------------~~g~~dpyv~v~l~~-~~~kT~~~-~t-~nP~wne~f~f~v~~~ 423 (713)
.|.|.++|.+|++|+..+ ..+.+||||.|.+++ .+.||+++ +. .||.|||+|.+.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 478999999999997521 135789999999965 57899999 64 6999999999999888
Q ss_pred CceEEEEEEEecCCCCceeEEEEEeccccccCCeeeeeeeceecc------cceEEEEEEEEeecC
Q 005132 424 GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATRVDD 483 (713)
Q Consensus 424 ~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~------~G~I~l~l~~~~~~~ 483 (713)
...|.|.|+|.+.++..+||.+.+|.+++..+...+.|+++-+.. ..+|+++++|.++..
T Consensus 87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 999999999999998889999999999999999999999997532 248999999998754
No 211
>PLN02270 phospholipase D alpha
Probab=98.96 E-value=5.3e-09 Score=119.57 Aligned_cols=116 Identities=22% Similarity=0.373 Sum_probs=97.7
Q ss_pred CceEEEEEEEccCccccc------------------cCCCCCcEEEEEECCe-EEEEEeeeCC-CCCeeeeEEEEecC--
Q 005132 496 NGWIELVIVEARDLVAAD------------------LRGTSDPYVKVQYGDL-KKRTKVIFKT-LNPQWHQTLEFPDD-- 553 (713)
Q Consensus 496 ~~~L~v~v~~a~~L~~~d------------------~~g~~DPyv~v~~~~~-~~kT~v~~~t-~nP~wne~~~f~v~-- 553 (713)
-|.|.++|++|++|+..+ ..+++||||.|.+++. ..||+++.+. .||.|||+|..++.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 488999999999998521 2367899999999986 5699999885 69999999999994
Q ss_pred CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC------CCcEEEEEEEEEecC
Q 005132 554 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITRKVPE 613 (713)
Q Consensus 554 ~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~~~l~~~~p~ 613 (713)
...+.|.|.|.|.++.. +||.+.||..++..+...+.|+++.+. ..-.|+++++| .|-
T Consensus 87 ~~~v~f~vkd~~~~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f-~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQY-FEV 150 (808)
T ss_pred cceEEEEEecCCccCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEE-EEc
Confidence 67899999999988754 999999999999999999999999642 23589999999 553
No 212
>PLN02952 phosphoinositide phospholipase C
Probab=98.92 E-value=9.1e-09 Score=115.69 Aligned_cols=99 Identities=21% Similarity=0.306 Sum_probs=82.2
Q ss_pred CceEEEEEEEccCcccc------ccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEE
Q 005132 496 NGWIELVIVEARDLVAA------DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHV 561 (713)
Q Consensus 496 ~~~L~v~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V 561 (713)
...|.|.|+.|++++.. +.....||||+|.+-+ .+++|+++.++.||+|||+|.|++. -..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46799999999987531 1123359999999954 4679999999999999999999874 24589999
Q ss_pred EECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCC
Q 005132 562 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 597 (713)
Q Consensus 562 ~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 597 (713)
+|+|..++|+++|++.+|+..+..+. +|++|.+
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 99999999999999999999998884 6999963
No 213
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.88 E-value=1e-08 Score=93.89 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=75.5
Q ss_pred EEEEEEEeEcCCCC--CCCCC--CCcEEEEEEC---CeEEeccCC-CCCC--CccceEEEEEEeC---------------
Q 005132 368 INVTVVEGKDLMPK--DKSGK--CDPYVKLQYG---KIVQRTRTA-HSPN--HVWNQKFELDEIG--------------- 422 (713)
Q Consensus 368 L~V~I~~a~~L~~~--~~~g~--~dpyv~v~l~---~~~~kT~~~-~t~n--P~wne~f~f~v~~--------------- 422 (713)
|+|.|.+|++++.. +..|. +||||++.+. ...++|.+. ++.| |.||+.|.|.+..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 78999999996543 33564 9999999994 458999999 9998 9999999988654
Q ss_pred ------C---CceEEEEEEEecCC-CCceeEEEEEeccccccCCe
Q 005132 423 ------G---GECLMVKCYNEEIF-GDENMGSARVNLEGLVEGSV 457 (713)
Q Consensus 423 ------~---~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~ 457 (713)
. ...|.++|||+|.+ +|++||.+.++|..+..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 1 46899999999998 89999999999999876543
No 214
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.85 E-value=5.2e-10 Score=122.41 Aligned_cols=119 Identities=25% Similarity=0.451 Sum_probs=99.5
Q ss_pred CCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe-------------------------------EEEEEeeeC
Q 005132 490 QNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-------------------------------KKRTKVIFK 538 (713)
Q Consensus 490 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------------------------------~~kT~v~~~ 538 (713)
....++...+.+.+.+|.||.++|.+|.||||+.+.+-.. -+.|.|.++
T Consensus 107 ~~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~ 186 (1103)
T KOG1328|consen 107 KQNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK 186 (1103)
T ss_pred cCCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc
Confidence 4456888889999999999999999999999999887210 135889999
Q ss_pred CCCCeeeeEEEEec---CCCeEEEEEEECCCC---------------------------------C---CCCeeEEEEEE
Q 005132 539 TLNPQWHQTLEFPD---DGSPLTLHVRDHNAL---------------------------------L---ASSSIGDCVVE 579 (713)
Q Consensus 539 t~nP~wne~~~f~v---~~~~l~i~V~D~d~~---------------------------------~---~d~~iG~~~i~ 579 (713)
|+||.|+|.|.|.+ ....+++.+||||.- + .|+|+|++.||
T Consensus 187 TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip 266 (1103)
T KOG1328|consen 187 TLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP 266 (1103)
T ss_pred cCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 99999999999997 478999999999842 1 28999999999
Q ss_pred ceecCCCCceeeEEEcCC-----CCCcEEEEEEEE
Q 005132 580 YQRLPPNQMADKWIPLQG-----VRKGEIHVLITR 609 (713)
Q Consensus 580 L~~l~~~~~~~~w~~L~~-----~~~G~i~~~l~~ 609 (713)
|.++... ..++||.|+. +..|.+++.+-+
T Consensus 267 l~EiP~~-Gld~WFkLepRS~~S~VqG~~~LklwL 300 (1103)
T KOG1328|consen 267 LAEIPPD-GLDQWFKLEPRSDKSKVQGQVKLKLWL 300 (1103)
T ss_pred hhcCCcc-hHHHHhccCcccccccccceEEEEEEE
Confidence 9999764 5789999974 346999998866
No 215
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.85 E-value=3.2e-09 Score=121.74 Aligned_cols=114 Identities=25% Similarity=0.386 Sum_probs=102.1
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 543 (713)
Q Consensus 469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 543 (713)
.|+|+++++|. .+.|.|.|..|++|+-...+...||||+.++.. .+.||+++++|+||.
T Consensus 1512 ggqV~LsIsY~----------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PT 1575 (1639)
T KOG0905|consen 1512 GGQVKLSISYN----------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPT 1575 (1639)
T ss_pred CceEEEEEEEc----------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCc
Confidence 47999999986 699999999999998777777899999999965 367999999999999
Q ss_pred eeeEEEEe------cCCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132 544 WHQTLEFP------DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 598 (713)
Q Consensus 544 wne~~~f~------v~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 598 (713)
|||.+.+. .....|.++||..+.+..+.++|.+.|+|.+++..+....||+|...
T Consensus 1576 fnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1576 FNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred hhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 99999987 34689999999999999999999999999999888888899999753
No 216
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.85 E-value=1.8e-08 Score=113.19 Aligned_cols=112 Identities=15% Similarity=0.251 Sum_probs=87.6
Q ss_pred CCceEEEEEEEccCcccc------ccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEE
Q 005132 495 GNGWIELVIVEARDLVAA------DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLH 560 (713)
Q Consensus 495 ~~~~L~v~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~ 560 (713)
....|.|.|+.|++++.. +.....||||+|.+-+ .+++|++..++.||+|||+|.|++. =..|+|+
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence 346799999999987421 2233569999999943 3578999999999999999999974 3678999
Q ss_pred EEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE
Q 005132 561 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR 609 (713)
Q Consensus 561 V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~ 609 (713)
|+|+|..++|+|+|+..+|+..|..+- +..+|.+.. .-.|.+.|.+
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 999999899999999999999998873 566775422 2456666654
No 217
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.83 E-value=2.5e-08 Score=108.80 Aligned_cols=173 Identities=23% Similarity=0.280 Sum_probs=131.8
Q ss_pred eEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-----CCceeEEEEEeccccccCCeeeeeeecee---c
Q 005132 398 IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-----GDENMGSARVNLEGLVEGSVRDIWVPLEK---V 467 (713)
Q Consensus 398 ~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~w~~L~~---~ 467 (713)
+..+|.++ +..||.|-+.|....... .+.++|.++|-+.. ..+++|++...+..+........-+.++. .
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~ 120 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNA 120 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccC
Confidence 35688888 999999999998775554 78899999987654 57899999999999886654433333332 3
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC--C----eEEEEEeeeCCCC
Q 005132 468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D----LKKRTKVIFKTLN 541 (713)
Q Consensus 468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~----~~~kT~v~~~t~n 541 (713)
.+|.|.+.++-. ...........+|++|..+|..+.+|||..++-- . ..++|.++++|+|
T Consensus 121 ~~g~iti~aee~--------------~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~ 186 (529)
T KOG1327|consen 121 GSGTITISAEED--------------ESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLN 186 (529)
T ss_pred CcccEEEEeecc--------------cccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCC
Confidence 578888887543 1222334445569999999999999999988763 2 3579999999999
Q ss_pred CeeeeEEEEe------cCCCeEEEEEEECCCCCCCCeeEEEEEEceecC
Q 005132 542 PQWHQTLEFP------DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP 584 (713)
Q Consensus 542 P~wne~~~f~------v~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~ 584 (713)
|.|-+...=. ..+..+.+++||++..+++++||++..++..+.
T Consensus 187 p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 187 PQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 9998732211 136889999999999999999999998887774
No 218
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.83 E-value=1.1e-08 Score=109.33 Aligned_cols=113 Identities=28% Similarity=0.571 Sum_probs=98.6
Q ss_pred ceEEEEEEEccCcccccc-CCCCCcEEEEEECCeEEEEEeeeCCCCCeee-eEEEEecC-----CCeEEEEEEECCCCCC
Q 005132 497 GWIELVIVEARDLVAADL-RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWH-QTLEFPDD-----GSPLTLHVRDHNALLA 569 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wn-e~~~f~v~-----~~~l~i~V~D~d~~~~ 569 (713)
|.|-|.|..||+||.+|. ....|.||.+.+++..+||.|..+++||.|| +-|.|+++ ...|.|.++|||.++.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678899999999999985 4577999999999999999999999999999 68899984 6789999999999999
Q ss_pred CCeeEEEEEEceecC----------CCCceeeEEEcCCC---CCcEEEEEEEE
Q 005132 570 SSSIGDCVVEYQRLP----------PNQMADKWIPLQGV---RKGEIHVLITR 609 (713)
Q Consensus 570 d~~iG~~~i~L~~l~----------~~~~~~~w~~L~~~---~~G~i~~~l~~ 609 (713)
++-||.+.|+++.+. .+.....|+++... -+|||.+-+..
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv 135 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV 135 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence 999999999988763 23457899999753 47999988776
No 219
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.80 E-value=4e-08 Score=110.19 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=86.3
Q ss_pred CceEEEEEEEccCcc----c--cccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEE
Q 005132 496 NGWIELVIVEARDLV----A--ADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHV 561 (713)
Q Consensus 496 ~~~L~v~v~~a~~L~----~--~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V 561 (713)
...|+|.|+.|++++ . .+.....||||+|.+.+ .+++|+++.++.||+|||+|.|.+. =..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 1 12234579999999953 4679999999999999999999874 35689999
Q ss_pred EECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE
Q 005132 562 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR 609 (713)
Q Consensus 562 ~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~ 609 (713)
+|+|..++|+|+|+..+|+..|..|- +..+|.+.. .-.|.+.+.+
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCCeeEEEEEEe
Confidence 99999899999999999999998773 566775422 2455555544
No 220
>PLN02223 phosphoinositide phospholipase C
Probab=98.78 E-value=5.1e-08 Score=107.47 Aligned_cols=110 Identities=18% Similarity=0.268 Sum_probs=85.5
Q ss_pred cEEEEEEEEeEcCCC-----CCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEE
Q 005132 366 RKINVTVVEGKDLMP-----KDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYN 433 (713)
Q Consensus 366 g~L~V~I~~a~~L~~-----~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d 433 (713)
..|.|+|+.|+++.. .+....+||||+|.+. ...++|.+. ++.||+|||+|+|.+..+ -..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 479999999998741 1223568999999993 336778777 899999999999998876 5679999999
Q ss_pred ecCC-CCceeEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEEE
Q 005132 434 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA 478 (713)
Q Consensus 434 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~ 478 (713)
+|.. .++++|+..+|+..+..+- ++++|.+.. .-.|.+.++|
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 9987 8999999999999998876 556665421 3455555554
No 221
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.74 E-value=4.4e-08 Score=84.28 Aligned_cols=88 Identities=16% Similarity=0.312 Sum_probs=66.2
Q ss_pred EEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCcEEEEeecCCCCCCcccceEEEEEecCCc
Q 005132 175 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETG 254 (713)
Q Consensus 175 L~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~~~~tt~i~~~~nP~WnEtf~~~v~~~~~ 254 (713)
|.|+|+.|+|+...+... |.++ +||||.+.++...+.++. .+.||+|||+|.|.| +...
T Consensus 1 L~I~V~~~RdvdH~~~~~------------------~~~~-~etyV~IKved~~kaRTr-~srnd~WnE~F~i~V-dk~n 59 (109)
T cd08689 1 LTITITSARDVDHIASPR------------------FSKR-PETYVSIKVEDVERARTK-PSRNDRWNEDFEIPV-EKNN 59 (109)
T ss_pred CEEEEEEEecCccccchh------------------hccC-CCcEEEEEECCEEEEecc-CCCCCcccceEEEEe-cCCc
Confidence 579999999997665211 1111 499999999865332222 248999999999999 4578
Q ss_pred eEEEEEEEeCCCCCccceeEEEEEEcccccC
Q 005132 255 TVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 285 (713)
Q Consensus 255 ~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~ 285 (713)
.+.|.|||... ...--+|...+.+.+|..
T Consensus 60 Eiel~VyDk~~--~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 60 EEEVIVYDKGG--DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred EEEEEEEeCCC--CeecceeeehhhHHHHHH
Confidence 89999999874 255589999999999885
No 222
>PLN02228 Phosphoinositide phospholipase C
Probab=98.73 E-value=1e-07 Score=106.68 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=88.4
Q ss_pred CceEEEEEEEccCccc---c---ccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee-eeEEEEecC---CCeEEEE
Q 005132 496 NGWIELVIVEARDLVA---A---DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW-HQTLEFPDD---GSPLTLH 560 (713)
Q Consensus 496 ~~~L~v~v~~a~~L~~---~---d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w-ne~~~f~v~---~~~l~i~ 560 (713)
...|+|.|+.|++|+. . +.....||||+|.+.+ .+++|+++.++.||+| ||+|.|++. =..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998731 1 1223479999999943 3679999999999999 999999974 3568999
Q ss_pred EEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132 561 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR 609 (713)
Q Consensus 561 V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~~~l~~ 609 (713)
|+|+|..+.|+++|++.+|++.|..| -+.++|.+. ....|.+.+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~G---YR~VpL~~~~G~~l~~atLfv~~~~ 560 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSG---VRAVRLHDRAGKAYKNTRLLVSFAL 560 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCC---eeEEEccCCCCCCCCCeEEEEEEEE
Confidence 99999989999999999999999877 356677542 23678888877
No 223
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.71 E-value=4.8e-08 Score=109.59 Aligned_cols=110 Identities=21% Similarity=0.317 Sum_probs=85.4
Q ss_pred ceEEEEEEEccCccccc----cCCCCCcEEEEEECC-----eEEEEE-eeeCCCCCeeeeEEEEecC---CCeEEEEEEE
Q 005132 497 GWIELVIVEARDLVAAD----LRGTSDPYVKVQYGD-----LKKRTK-VIFKTLNPQWHQTLEFPDD---GSPLTLHVRD 563 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d----~~g~~DPyv~v~~~~-----~~~kT~-v~~~t~nP~wne~~~f~v~---~~~l~i~V~D 563 (713)
..|.|.|+.|++++..- .+..+||||.|.+.+ ...+|+ +..++.||.|+|+|+|++. =.-|+|.|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 37999999999775432 235689999999965 367999 4557899999999999985 3568999999
Q ss_pred CCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132 564 HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR 609 (713)
Q Consensus 564 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~~~l~~ 609 (713)
+|..++|+|+|+.++|+..|..|- +-++|.+. ..-.|.+.+.+
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSSASLFVRIAI 743 (746)
T ss_pred cCCCCcccccceeeccHHHhhCce---eeeeecCCCCccccceeEEEEEEE
Confidence 999999999999999999998774 45566543 12445555544
No 224
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.69 E-value=8.3e-08 Score=82.60 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=71.7
Q ss_pred EEEEEEEeEcCCCCC---CCCCCCcEEEEEECCe-EEeccCCCCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeE
Q 005132 368 INVTVVEGKDLMPKD---KSGKCDPYVKLQYGKI-VQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMG 443 (713)
Q Consensus 368 L~V~I~~a~~L~~~~---~~g~~dpyv~v~l~~~-~~kT~~~~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG 443 (713)
|.|+|+.|+|+...+ ..+.++|||.+++++. +.||++ +.||.|||+|.|.+ +....+.+.|||...-....+|
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~--srnd~WnE~F~i~V-dk~nEiel~VyDk~~~~~~Pi~ 77 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP--SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGDQPVPVG 77 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC--CCCCcccceEEEEe-cCCcEEEEEEEeCCCCeeccee
Confidence 579999999997766 5788999999999876 888886 58999999999998 5789999999998665566788
Q ss_pred EEEEecccccc
Q 005132 444 SARVNLEGLVE 454 (713)
Q Consensus 444 ~~~i~l~~l~~ 454 (713)
-.-+.+.+|.+
T Consensus 78 llW~~~sdi~E 88 (109)
T cd08689 78 LLWLRLSDIAE 88 (109)
T ss_pred eehhhHHHHHH
Confidence 88888888764
No 225
>PLN02952 phosphoinositide phospholipase C
Probab=98.61 E-value=4.6e-07 Score=102.16 Aligned_cols=98 Identities=20% Similarity=0.257 Sum_probs=81.2
Q ss_pred cEEEEEEEEeEcCCCC------CCCCCCCcEEEEEE-C----CeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEE
Q 005132 366 RKINVTVVEGKDLMPK------DKSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY 432 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~------~~~g~~dpyv~v~l-~----~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~ 432 (713)
..|.|+|+.|.+++.. +....+||||+|.+ | ....+|+++ ++.||+||++|+|.+..+ -..++|+|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4799999999987421 12234699999998 2 457899999 889999999999998776 568999999
Q ss_pred EecCC-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132 433 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK 466 (713)
Q Consensus 433 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 466 (713)
|+|.. .++++|++.+|+..|..+. +|++|.+
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 99887 7999999999999998876 5888864
No 226
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.56 E-value=5.8e-07 Score=101.15 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=84.9
Q ss_pred cEEEEEEEEeEcCCCC------CCCCCCCcEEEEEE-C----CeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEE
Q 005132 366 RKINVTVVEGKDLMPK------DKSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY 432 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~------~~~g~~dpyv~v~l-~----~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~ 432 (713)
.+|.|+|+.+.++... +....+||||+|.+ | ....+|++. ++.||.|||+|+|.+..+ -..|+|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 4799999999987421 22345799999999 2 346789988 999999999999998776 578999999
Q ss_pred EecCC-CCceeEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEEE
Q 005132 433 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA 478 (713)
Q Consensus 433 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~ 478 (713)
|+|.. +|+++|+..+|+..|..+- +.++|.+.. .-.|.+.+.+
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 99986 8999999999999998876 345665422 2345555543
No 227
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.51 E-value=2.8e-07 Score=102.57 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=88.2
Q ss_pred CceEEEEEEEccCccccccCCCCCcEEEEEECC-----e-EEEEEeeeCCCCCeee-eEEEEecCC---CeEEEEEEECC
Q 005132 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----L-KKRTKVIFKTLNPQWH-QTLEFPDDG---SPLTLHVRDHN 565 (713)
Q Consensus 496 ~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~-~~kT~v~~~t~nP~wn-e~~~f~v~~---~~l~i~V~D~d 565 (713)
.-.|.|.|+.||.|+.. ..|...|||.|.+.+ . .++|.|+.+.+||+|| |.|+|.+.+ ..|++.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 36789999999999954 455678999999954 2 3455667789999999 999999965 45899999999
Q ss_pred CCCCCCeeEEEEEEceecCCCCceeeEEEcCCCCC-----cEEEEEEEE
Q 005132 566 ALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK-----GEIHVLITR 609 (713)
Q Consensus 566 ~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~-----G~i~~~l~~ 609 (713)
.++...|||+++.|+..+..+ -+-.+|++..+ ..|++.+..
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~G---fRsVpLkN~ySEdlELaSLLv~i~m 1188 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG---FRSVPLKNGYSEDLELASLLVFIEM 1188 (1267)
T ss_pred ccCCcceeeeeecchhhhhcc---ceeeecccCchhhhhhhhheeeeEe
Confidence 999999999999999998766 46678876654 555666665
No 228
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.50 E-value=1.2e-06 Score=98.44 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=79.4
Q ss_pred cEEEEEEEEeEcCC----C--CCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEE
Q 005132 366 RKINVTVVEGKDLM----P--KDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY 432 (713)
Q Consensus 366 g~L~V~I~~a~~L~----~--~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~ 432 (713)
..|.|+|+.+.++. . .+....+||||+|.+. ....+|+++ ++.||.|||+|+|.+..+ -..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 47999999998752 1 1223468999999992 347899999 889999999999998776 578999999
Q ss_pred EecCC-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132 433 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK 466 (713)
Q Consensus 433 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 466 (713)
|+|.. .++++|+..+|+..|..+- +.++|.+
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~ 563 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHS 563 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCcc---ceEEccC
Confidence 99876 7999999999999998775 3456654
No 229
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.48 E-value=4.9e-07 Score=97.07 Aligned_cols=113 Identities=19% Similarity=0.429 Sum_probs=95.2
Q ss_pred cEEEEEEEEeEcCCCCCCC-CCCCcEEEEEECCeEEeccCC-CCCCCccc-eEEEEEEeCC---CceEEEEEEEecCC-C
Q 005132 366 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYGKIVQRTRTA-HSPNHVWN-QKFELDEIGG---GECLMVKCYNEEIF-G 438 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~-g~~dpyv~v~l~~~~~kT~~~-~t~nP~wn-e~f~f~v~~~---~~~l~i~V~d~~~~-~ 438 (713)
|.|.|+|..||+|+.+|.. ...|.||++++++..+||.+. +++||.|| +.|.|.+.+. .+.|+|.+.|+|.. .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 6899999999999988854 578999999999999999999 99999998 6688887663 67999999999998 8
Q ss_pred CceeEEEEEeccccccC----------Ceeeeeeeceecc---cceEEEEEEE
Q 005132 439 DENMGSARVNLEGLVEG----------SVRDIWVPLEKVN---TGELRLQIEA 478 (713)
Q Consensus 439 d~~lG~~~i~l~~l~~~----------~~~~~w~~L~~~~---~G~I~l~l~~ 478 (713)
++-||.+.|+++.+... .....|+++.+.- +|+|.+-+..
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv 135 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV 135 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence 99999999999887621 2357899987743 6888776653
No 230
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.47 E-value=1.2e-06 Score=95.95 Aligned_cols=180 Identities=21% Similarity=0.319 Sum_probs=125.3
Q ss_pred cEEEEeecCCCCCCcccceEEEEEecC-CceEEEEEEEeCCC---CCccceeEEEEEEcccccCCccceeecCCCCcccc
Q 005132 226 ELTRRTDARPGSDPRWDSMFNMVLHEE-TGTVRFNLYECIPG---HVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIA 301 (713)
Q Consensus 226 ~~~~tt~i~~~~nP~WnEtf~~~v~~~-~~~L~~~v~d~d~~---~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~ 301 (713)
+..||..+.+.+||.|-++|.+..+-. .|.|++.+||.+.. ....|++|+++..+..+...... .
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~-----------~ 109 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL-----------T 109 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh-----------h
Confidence 456888899999999999998876544 79999999998863 13567999999999998854321 0
Q ss_pred ccccccCCeeeeeeccCCcceeeEEEEEEEeeeccCCCCCCCCCCcCCCCcccccCCCcCcCCccEEEEEEEEeEcCCCC
Q 005132 302 KHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPK 381 (713)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~L~V~I~~a~~L~~~ 381 (713)
..+.++.. ....+|.+.+.. +. ..+ . .....-..+|++|..+
T Consensus 110 ~~l~~~~~--------~~~~~g~iti~a--ee-----~~~----------------~-------~~~~~~~~~~~~ld~k 151 (529)
T KOG1327|consen 110 GPLLLKPG--------KNAGSGTITISA--EE-----DES----------------D-------NDVVQFSFRAKNLDPK 151 (529)
T ss_pred hhhhcccC--------ccCCcccEEEEe--ec-----ccc----------------c-------CceeeeeeeeeecCcc
Confidence 00000000 111235554332 11 000 0 0223334568999999
Q ss_pred CCCCCCCcEEEEEE--C----CeEEeccCC-CCCCCccceEEE----EEEeCCCceEEEEEEEecCC-CCceeEEEEEec
Q 005132 382 DKSGKCDPYVKLQY--G----KIVQRTRTA-HSPNHVWNQKFE----LDEIGGGECLMVKCYNEEIF-GDENMGSARVNL 449 (713)
Q Consensus 382 ~~~g~~dpyv~v~l--~----~~~~kT~~~-~t~nP~wne~f~----f~v~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l 449 (713)
+..+++|||..++- + ...++|.++ ++++|.|.+... +...+....+.+.|||++.. +++++|.+..++
T Consensus 152 d~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~ 231 (529)
T KOG1327|consen 152 DFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTL 231 (529)
T ss_pred cccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccH
Confidence 99999999999876 2 237899999 999999976542 22233467899999999988 679999999999
Q ss_pred ccccc
Q 005132 450 EGLVE 454 (713)
Q Consensus 450 ~~l~~ 454 (713)
.++..
T Consensus 232 ~~~~~ 236 (529)
T KOG1327|consen 232 SELQE 236 (529)
T ss_pred HHhcc
Confidence 98864
No 231
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.44 E-value=8e-07 Score=99.97 Aligned_cols=110 Identities=18% Similarity=0.340 Sum_probs=86.4
Q ss_pred EEEEEEEEeEcCCCC-C---CCCCCCcEEEEEEC-----CeEEeccCC--CCCCCccceEEEEEEeCC-CceEEEEEEEe
Q 005132 367 KINVTVVEGKDLMPK-D---KSGKCDPYVKLQYG-----KIVQRTRTA--HSPNHVWNQKFELDEIGG-GECLMVKCYNE 434 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~-~---~~g~~dpyv~v~l~-----~~~~kT~~~--~t~nP~wne~f~f~v~~~-~~~l~i~V~d~ 434 (713)
+|.|+|+.+.++... + .....||||.|.+- ....+|+++ ++-||.|+|+|+|.+..+ -..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 799999999976432 2 23568999999983 347899966 899999999999999887 57899999999
Q ss_pred cCC-CCceeEEEEEeccccccCCeeeeeeeceec-----ccceEEEEEEEE
Q 005132 435 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEAT 479 (713)
Q Consensus 435 ~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~I~l~l~~~ 479 (713)
|.. +|+++|+..+|+..|..+-.+ ++|.+. ....|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee---eeecCCCCccccceeEEEEEEEe
Confidence 998 799999999999999887644 555542 134555555543
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=98.43 E-value=2.2e-06 Score=96.20 Aligned_cols=111 Identities=20% Similarity=0.186 Sum_probs=85.9
Q ss_pred cEEEEEEEEeEcCCC---C---CCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCcc-ceEEEEEEeCC-CceEEEEE
Q 005132 366 RKINVTVVEGKDLMP---K---DKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVW-NQKFELDEIGG-GECLMVKC 431 (713)
Q Consensus 366 g~L~V~I~~a~~L~~---~---~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~w-ne~f~f~v~~~-~~~l~i~V 431 (713)
..|.|+|+.|++|+. . +....+||||+|.+ +...++|+++ ++.||.| |++|+|.+..+ -..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 12345899999998 2346899999 8899999 99999998776 57899999
Q ss_pred EEecCC-CCceeEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEEEE
Q 005132 432 YNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT 479 (713)
Q Consensus 432 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~~ 479 (713)
+|++.. .++++|++.+|+..|..+- +.++|.+.. ...|.+.+.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEc
Confidence 999876 8999999999999997765 445665422 34566666554
No 233
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.42 E-value=1.1e-06 Score=97.93 Aligned_cols=116 Identities=22% Similarity=0.320 Sum_probs=91.3
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC--CCCCCccc-eEEEEEEeCC-CceEEEEEEEecC
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA--HSPNHVWN-QKFELDEIGG-GECLMVKCYNEEI 436 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~--~t~nP~wn-e~f~f~v~~~-~~~l~i~V~d~~~ 436 (713)
-.|.|.|+.||.|+.. ..|...|||+|.+ +..+++|.++ ++.||+|| ++|+|.+..+ -..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 4789999999999854 3567789999998 2346666666 99999999 9999999987 6789999999999
Q ss_pred C-CCceeEEEEEeccccccCCeeeeeeeceeccc-----ceEEEEEEEEeecCCC
Q 005132 437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKVNT-----GELRLQIEATRVDDNE 485 (713)
Q Consensus 437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~-----G~I~l~l~~~~~~~~~ 485 (713)
+ ...+||++..|+..+..+- +-++|.+.-+ ..+.+.++..++..++
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred cCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEeccccCcc
Confidence 9 5569999999999987654 4466665432 4567777777665543
No 234
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=98.21 E-value=5.9e-06 Score=70.96 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=55.2
Q ss_pred hhhHHHHHHHhh-cCCcccceEEEeeeecCCCCCceeeeeeEeCCCCCEEEEEEeEEeccCCceEEEEEe
Q 005132 2 YLHLLLKKRLKH-RKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAK 70 (713)
Q Consensus 2 ~~~~~ve~~l~~-~~P~~i~~~~~~~f~lG~~pp~i~~v~~~~~~~~d~~~~d~~~~~~~~~~~~~l~~~ 70 (713)
++++.++..|.. .+|+||++|++++++||+.||.|.++++.....+++..+|++++|.+ +....+..+
T Consensus 20 ~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G-~~~l~l~t~ 88 (91)
T PF10296_consen 20 KIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG-GFSLTLETK 88 (91)
T ss_pred HHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC-CeEEEEEEE
Confidence 456677777876 46999999999999999999999999987656667789999999997 444444444
No 235
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.21 E-value=1.6e-06 Score=76.88 Aligned_cols=97 Identities=21% Similarity=0.383 Sum_probs=75.8
Q ss_pred EEEEEEEccCcccccc-------------CCCCCcEEEEEE----CCeEEEEEeeeCCCCCeeeeEEEEecC--------
Q 005132 499 IELVIVEARDLVAADL-------------RGTSDPYVKVQY----GDLKKRTKVIFKTLNPQWHQTLEFPDD-------- 553 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~-------------~g~~DPyv~v~~----~~~~~kT~v~~~t~nP~wne~~~f~v~-------- 553 (713)
|.|.|++|.+|.++.. .--.++||++.+ .++..+|+++.++.+|.|+-+++|+++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678899999874321 112489999996 346789999999999999999999972
Q ss_pred ----------CCeEEEEEEECCCC----------CCCCeeEEEEEEceecC-CCCceeeEEEc
Q 005132 554 ----------GSPLTLHVRDHNAL----------LASSSIGDCVVEYQRLP-PNQMADKWIPL 595 (713)
Q Consensus 554 ----------~~~l~i~V~D~d~~----------~~d~~iG~~~i~L~~l~-~~~~~~~w~~L 595 (713)
...+.++||+.+.- .+|-.||.+.||+.+|. .......||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 46799999987642 35678999999999985 44568999985
No 236
>PLN02352 phospholipase D epsilon
Probab=98.20 E-value=1.1e-05 Score=92.85 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=89.8
Q ss_pred ccEEEEEEEEeEcCCCC----C-CCCCCCcEEEEEECC-eEEeccCCCCCCCccceEEEEEEeCCC-ceEEEEEEEecCC
Q 005132 365 GRKINVTVVEGKDLMPK----D-KSGKCDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGGG-ECLMVKCYNEEIF 437 (713)
Q Consensus 365 ~g~L~V~I~~a~~L~~~----~-~~g~~dpyv~v~l~~-~~~kT~~~~t~nP~wne~f~f~v~~~~-~~l~i~V~d~~~~ 437 (713)
.|.|.++|.+|+-+... . .....+|||.|.+++ .+.|| .+..||.|+|+|.+.+.... ..|.|.|+|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt--~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT--SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC--CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 47999999999854221 0 111239999999965 47788 44459999999999988876 789999998
Q ss_pred CCceeEEEEEeccccccCCe-eeeeeeceecc----c-ceEEEEEEEEeecCC
Q 005132 438 GDENMGSARVNLEGLVEGSV-RDIWVPLEKVN----T-GELRLQIEATRVDDN 484 (713)
Q Consensus 438 ~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~~~----~-G~I~l~l~~~~~~~~ 484 (713)
+..+||.+.+|.+++..+.. .+.|+++-+.. . .+|+++++|.++...
T Consensus 83 ~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 36799999999999998866 89999997532 3 489999999997543
No 237
>PLN02352 phospholipase D epsilon
Probab=98.13 E-value=1.3e-05 Score=92.02 Aligned_cols=111 Identities=17% Similarity=0.269 Sum_probs=83.5
Q ss_pred CCceEEEEEEEccCcccc----c-cCCCCCcEEEEEECCeE-EEEEeeeCCCCCeeeeEEEEecC--C-CeEEEEEEECC
Q 005132 495 GNGWIELVIVEARDLVAA----D-LRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD--G-SPLTLHVRDHN 565 (713)
Q Consensus 495 ~~~~L~v~v~~a~~L~~~----d-~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~--~-~~l~i~V~D~d 565 (713)
--|.|.++|.+|+-+... + .....||||.|.+++.+ .|| .+.-||+|||+|..++. . ..+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 347888888888733221 1 11223999999998864 578 55669999999999994 2 469999998
Q ss_pred CCCCCCeeEEEEEEceecCCCCc-eeeEEEcCCCC----C-cEEEEEEEEEecCC
Q 005132 566 ALLASSSIGDCVVEYQRLPPNQM-ADKWIPLQGVR----K-GEIHVLITRKVPEL 614 (713)
Q Consensus 566 ~~~~d~~iG~~~i~L~~l~~~~~-~~~w~~L~~~~----~-G~i~~~l~~~~p~~ 614 (713)
+..+||.+.||..++..+.. .+.|+++.+.. . ..|+++++| .|..
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~ 133 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWF-RPAE 133 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEE-EEhh
Confidence 25699999999999988765 99999996421 3 489999999 5543
No 238
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.12 E-value=3.5e-06 Score=97.57 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=89.1
Q ss_pred ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEe
Q 005132 365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNE 434 (713)
Q Consensus 365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~ 434 (713)
.|+|.|-|..|++|+-......+||||+.|+- ..+.||+++ +|.||.|||..++.... ....|++.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 36999999999999777767889999999992 237899999 99999999999988433 257999999999
Q ss_pred cCC-CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132 435 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 467 (713)
Q Consensus 435 ~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 467 (713)
+.. .+.++|.+.++|.++....+...||+|...
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 888 889999999999999877777799999864
No 239
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.03 E-value=0.00053 Score=72.80 Aligned_cols=211 Identities=15% Similarity=0.173 Sum_probs=153.3
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC--------CCceEEEEEEEecCC-
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--------GGECLMVKCYNEEIF- 437 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~--------~~~~l~i~V~d~~~~- 437 (713)
+.+.|.+|++.+... .-.-.+...++++...|..+ ++..|.||....+.+.. ....|+++||.-+..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998652 34567888999999999999 99999999999888533 356899999998833
Q ss_pred -CCceeEEEEEecccc---ccC--Ceeeeeeeceec------ccceEEEEEEEEeecCC-----C-----C-CC------
Q 005132 438 -GDENMGSARVNLEGL---VEG--SVRDIWVPLEKV------NTGELRLQIEATRVDDN-----E-----G-SR------ 488 (713)
Q Consensus 438 -~d~~lG~~~i~l~~l---~~~--~~~~~w~~L~~~------~~G~I~l~l~~~~~~~~-----~-----~-~~------ 488 (713)
..+.+|.+.++|+.. ..+ .....||+|-+. .+-+|.+.+....-... . . .+
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 788999999999998 544 457899999775 24677777765532210 0 0 00
Q ss_pred -------------------------CCCCCCCCceEEEEEEEccCccccc------cCCCCCcEEEEEECCeEEEEEeee
Q 005132 489 -------------------------GQNIGSGNGWIELVIVEARDLVAAD------LRGTSDPYVKVQYGDLKKRTKVIF 537 (713)
Q Consensus 489 -------------------------~~~~~~~~~~L~v~v~~a~~L~~~d------~~g~~DPyv~v~~~~~~~kT~v~~ 537 (713)
..........|.|++..|.||...- ..+...-|...++-+....|....
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~ 238 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK 238 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence 0011234577889999999986541 123456677777877788888888
Q ss_pred CCCCCeee-eEEE-Eec------------CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCC
Q 005132 538 KTLNPQWH-QTLE-FPD------------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN 586 (713)
Q Consensus 538 ~t~nP~wn-e~~~-f~v------------~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~ 586 (713)
...+|.|. |.-. +.+ ....|.|.++.. +..||.+.|++..+.+.
T Consensus 239 ~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 239 SLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----NQSLGSTSVPLQPLLPK 296 (340)
T ss_pred ccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----CcEEEEEEEEhhhccCC
Confidence 88899874 3333 554 246788888764 45899999999988543
No 240
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.87 E-value=1.7e-05 Score=70.56 Aligned_cols=97 Identities=20% Similarity=0.328 Sum_probs=74.5
Q ss_pred EEEEEEEeEcCCCCC-------C------CCCCCcEEEEEE----CCeEEeccCC-CCCCCccceEEEEEEe--------
Q 005132 368 INVTVVEGKDLMPKD-------K------SGKCDPYVKLQY----GKIVQRTRTA-HSPNHVWNQKFELDEI-------- 421 (713)
Q Consensus 368 L~V~I~~a~~L~~~~-------~------~g~~dpyv~v~l----~~~~~kT~~~-~t~nP~wne~f~f~v~-------- 421 (713)
|.|.|++|.+|+... . .--.|+||++.+ +++..+|+++ ++-.|.|+..++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888888885321 0 113689999986 5778999999 9999999999999965
Q ss_pred C--------CCceEEEEEEEecCC-----------CCceeEEEEEeccccccCC-eeeeeeec
Q 005132 422 G--------GGECLMVKCYNEEIF-----------GDENMGSARVNLEGLVEGS-VRDIWVPL 464 (713)
Q Consensus 422 ~--------~~~~l~i~V~d~~~~-----------~d~~lG~~~i~l~~l~~~~-~~~~w~~L 464 (713)
. ....+.|+||+.... +|-.||.+.||+.+|.... ....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 135899999986542 5678999999999988544 57889975
No 241
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=1.3e-05 Score=83.14 Aligned_cols=105 Identities=31% Similarity=0.380 Sum_probs=89.0
Q ss_pred CCCCceEEEEEEEccCcccccc-CCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEec--CCCeEEEEEE-E
Q 005132 493 GSGNGWIELVIVEARDLVAADL-RGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPD--DGSPLTLHVR-D 563 (713)
Q Consensus 493 ~~~~~~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v--~~~~l~i~V~-D 563 (713)
-...|.+.|.|++|++|..+.. ...++|||+|++.. .+.+|+...+|++|.|.+.+.|.- ....|.+.|| |
T Consensus 265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGD 344 (405)
T ss_pred hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecc
Confidence 3667999999999999976643 33789999999954 367999999999999999988875 5788999999 7
Q ss_pred CCCCCCCCeeEEEEEEceecCCCC-ceeeEEEcCC
Q 005132 564 HNALLASSSIGDCVVEYQRLPPNQ-MADKWIPLQG 597 (713)
Q Consensus 564 ~d~~~~d~~iG~~~i~L~~l~~~~-~~~~w~~L~~ 597 (713)
+.+...+.|+|.+.+-+.++.... +...||+|-+
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 777778899999999999998766 7899999975
No 242
>PLN02964 phosphatidylserine decarboxylase
Probab=97.73 E-value=4.3e-05 Score=87.32 Aligned_cols=85 Identities=15% Similarity=0.337 Sum_probs=69.4
Q ss_pred ccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCc-EEEEEeC-cEEEEeecCCCCCCcccceEEEEE
Q 005132 172 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTT-FVEIELE-ELTRRTDARPGSDPRWDSMFNMVL 249 (713)
Q Consensus 172 ~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dp-yv~v~~g-~~~~tt~i~~~~nP~WnEtf~~~v 249 (713)
.|++.+++++|+ +++. || |+.+.+| +..||...++|.||+|||...|+|
T Consensus 53 ~~~~~~~~~~~~----~~~~-------------------------~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~ 103 (644)
T PLN02964 53 SGIALLTLVGAE----MKFK-------------------------DKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLL 103 (644)
T ss_pred cCeEEEEeehhh----hccC-------------------------CcEEEEEEecceeeeeccccccCCcccchhhceEe
Confidence 499999999998 3331 44 5566677 567888889999999999999999
Q ss_pred ecC-CceEEEEEEEeCCCCCccceeEEEEEEcccccCC
Q 005132 250 HEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 286 (713)
Q Consensus 250 ~~~-~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~ 286 (713)
... ....+|.|||.++ +.+++++|.|+++|.++...
T Consensus 104 ~~~~~~~~~~~~~~~~~-~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 104 EKNGPHLARISVFETNR-LSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred ccCCcceEEEEEEecCC-CCHHHhhhheeecHhhccHH
Confidence 776 4557999999998 47999999999999887754
No 243
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.25 E-value=0.00027 Score=58.48 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=66.7
Q ss_pred EEEEEEeEcCCCC-CCCCCCCcEEEEE--ECC-eEEeccCC-CCCCCccceEEEEEEeC---CCceEEEEEEEecCCCCc
Q 005132 369 NVTVVEGKDLMPK-DKSGKCDPYVKLQ--YGK-IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIFGDE 440 (713)
Q Consensus 369 ~V~I~~a~~L~~~-~~~g~~dpyv~v~--l~~-~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~~d~ 440 (713)
.|++.+|+||.-- .-...+.-|++-. +.+ ..+||... +..||.|.|+|.|.+.. +...|.|.|+. ...+..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccc
Confidence 5889999999432 2233455666533 344 47899999 99999999999999755 36788999988 233789
Q ss_pred eeEEEEEeccccccCCeeeeee
Q 005132 441 NMGSARVNLEGLVEGSVRDIWV 462 (713)
Q Consensus 441 ~lG~~~i~l~~l~~~~~~~~w~ 462 (713)
.||.+.+.++++-..+ ...|.
T Consensus 81 ~iG~~sL~l~s~geeE-~~HW~ 101 (103)
T cd08684 81 TIGECSLSLRTLSTQE-TDHWL 101 (103)
T ss_pred eeeEEEeecccCCHHH-hhhhh
Confidence 9999999999874332 33454
No 244
>PLN02964 phosphatidylserine decarboxylase
Probab=97.19 E-value=0.00048 Score=78.91 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=72.7
Q ss_pred CCCceEEEEEEEccCccccccCCCCCcEEE-EEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCC
Q 005132 494 SGNGWIELVIVEARDLVAADLRGTSDPYVK-VQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLA 569 (713)
Q Consensus 494 ~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~-v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~ 569 (713)
.-.|...+++++|+ ++ ..|||+. +++|.+.+||.+.++|+||+|||...|.+. ....++.|||.++++.
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 123 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSK 123 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCH
Confidence 55688999999997 33 3688765 667889999999999999999998888773 3456999999999999
Q ss_pred CCeeEEEEEEceecCCCC
Q 005132 570 SSSIGDCVVEYQRLPPNQ 587 (713)
Q Consensus 570 d~~iG~~~i~L~~l~~~~ 587 (713)
++.+|.|.++|.++...+
T Consensus 124 n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 124 NTLVGYCELDLFDFVTQE 141 (644)
T ss_pred HHhhhheeecHhhccHHH
Confidence 999999999988776544
No 245
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.13 E-value=0.00035 Score=73.35 Aligned_cols=118 Identities=16% Similarity=0.230 Sum_probs=95.3
Q ss_pred CCceEEEEEEEccCccccccCCCCCcEEEEEEC-----CeEEEEEeeeCCCCCeeeeEEEEecC--------------CC
Q 005132 495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQWHQTLEFPDD--------------GS 555 (713)
Q Consensus 495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~wne~~~f~v~--------------~~ 555 (713)
....|.+.|.++++++........|-|+++.+- .++.+|.+++.|.+|.|+|.|.+.+. ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345677888888888766544566889999882 35679999999999999999999873 35
Q ss_pred eEEEEEEECCCC-CCCCeeEEEEEEceecCCCCceeeEEEcCC---CCCcEEEEEEEEEec
Q 005132 556 PLTLHVRDHNAL-LASSSIGDCVVEYQRLPPNQMADKWIPLQG---VRKGEIHVLITRKVP 612 (713)
Q Consensus 556 ~l~i~V~D~d~~-~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~---~~~G~i~~~l~~~~p 612 (713)
.+.|++|++..| ..|.++|.+.+.|..|.........++|.+ ...|.|.+++.++-|
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQP 505 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEecc
Confidence 699999998875 458899999999999987777788899864 346999999998655
No 246
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.10 E-value=0.00048 Score=57.08 Aligned_cols=91 Identities=14% Similarity=0.310 Sum_probs=66.8
Q ss_pred EEEEEccCcccccc-CCCCCcEEEEEE--CC-eEEEEEeeeCCCCCeeeeEEEEec-----CCCeEEEEEEECCCCCCCC
Q 005132 501 LVIVEARDLVAADL-RGTSDPYVKVQY--GD-LKKRTKVIFKTLNPQWHQTLEFPD-----DGSPLTLHVRDHNALLASS 571 (713)
Q Consensus 501 v~v~~a~~L~~~d~-~g~~DPyv~v~~--~~-~~~kT~v~~~t~nP~wne~~~f~v-----~~~~l~i~V~D~d~~~~d~ 571 (713)
+++++++||.-... .....-|++--+ .+ ...||.+.+...||+|+|+|.|.+ ..-.|.+.|+. ..-+.+
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe 80 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR 80 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence 67889999864332 233445666333 33 467999999999999999999987 46788999988 556788
Q ss_pred eeEEEEEEceecCCCCceeeEEE
Q 005132 572 SIGDCVVEYQRLPPNQMADKWIP 594 (713)
Q Consensus 572 ~iG~~~i~L~~l~~~~~~~~w~~ 594 (713)
.||.|.+.|+++-.. ....|..
T Consensus 81 ~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 81 TIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred eeeEEEeecccCCHH-Hhhhhhc
Confidence 999999999988543 3445543
No 247
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.09 E-value=0.0054 Score=65.24 Aligned_cols=108 Identities=20% Similarity=0.299 Sum_probs=91.5
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEec----------CCCeEEEEEEECC-CC
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD----------DGSPLTLHVRDHN-AL 567 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v----------~~~~l~i~V~D~d-~~ 567 (713)
+.++|++|++++... .-.-.+..++++....|..+..+-.|.||..+.+.+ .+..|++++|..| .-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998762 345678899999999999999999999999999997 3678999999988 55
Q ss_pred CCCCeeEEEEEEceec---CCC--CceeeEEEcCCC------CCcEEEEEEEE
Q 005132 568 LASSSIGDCVVEYQRL---PPN--QMADKWIPLQGV------RKGEIHVLITR 609 (713)
Q Consensus 568 ~~d~~iG~~~i~L~~l---~~~--~~~~~w~~L~~~------~~G~i~~~l~~ 609 (713)
+..+.||.+.++|... ..+ .....||+|-+. .+-||++.+.+
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~i 131 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSI 131 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEE
Confidence 7778999999999988 544 578899999654 35899999988
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.00081 Score=70.19 Aligned_cols=103 Identities=21% Similarity=0.297 Sum_probs=84.9
Q ss_pred ccEEEEEEEEeEcCCCCCCC-CCCCcEEEEEE--CC---eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEE-ecC
Q 005132 365 GRKINVTVVEGKDLMPKDKS-GKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYN-EEI 436 (713)
Q Consensus 365 ~g~L~V~I~~a~~L~~~~~~-g~~dpyv~v~l--~~---~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d-~~~ 436 (713)
.|.+.|.|++|++|..+... ..++|||+||+ ++ .+.+|+.. +|.+|-|-+...|.-..+...|.+.||- +..
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygR 347 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGR 347 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccc
Confidence 47899999999999655432 37899999999 33 26788888 9999999999999877778999999995 444
Q ss_pred C-CCceeEEEEEeccccccCC-eeeeeeeceec
Q 005132 437 F-GDENMGSARVNLEGLVEGS-VRDIWVPLEKV 467 (713)
Q Consensus 437 ~-~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~ 467 (713)
. .+.++|.+.+-+.++.... ....||+|.+.
T Consensus 348 md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 348 MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 4 7889999999999998766 67889999874
No 249
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.74 E-value=0.0011 Score=69.89 Aligned_cols=114 Identities=18% Similarity=0.311 Sum_probs=91.8
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CC--eEEeccCC-CCCCCccceEEEEEEeCC------------CceE
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSPNHVWNQKFELDEIGG------------GECL 427 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~--~~~kT~~~-~t~nP~wne~f~f~v~~~------------~~~l 427 (713)
..|.+.|+++++++.-......|.|+++.+ ++ +..+|.++ .+.+|.|+|.|.+.+... ...+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 368888899998876554456789999987 33 46677778 999999999999997662 2378
Q ss_pred EEEEEEecCC--CCceeEEEEEeccccccCCeeeeeeeceecc---cceEEEEEEEE
Q 005132 428 MVKCYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEKVN---TGELRLQIEAT 479 (713)
Q Consensus 428 ~i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~---~G~I~l~l~~~ 479 (713)
+|++|++..+ +|.++|.+.+.|.-|.........++|.+.. .|.|.+.+...
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 9999999888 8999999999999998777777888887632 58888888765
No 250
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.34 E-value=0.029 Score=52.60 Aligned_cols=119 Identities=12% Similarity=0.268 Sum_probs=85.9
Q ss_pred CCCceEEEEEEEccCccccccC--CCCCc--EEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC----------------
Q 005132 494 SGNGWIELVIVEARDLVAADLR--GTSDP--YVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---------------- 553 (713)
Q Consensus 494 ~~~~~L~v~v~~a~~L~~~d~~--g~~DP--yv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---------------- 553 (713)
+....|.++|..++-+..-... +..+. ++-+.+++++++|+.+..+++|.|+|.|.|+++
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 5667889999998866432111 33444 444555899999999999999999999999973
Q ss_pred CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCce--eeEEEcCC------CCCcEEEEEEEEEecC
Q 005132 554 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMA--DKWIPLQG------VRKGEIHVLITRKVPE 613 (713)
Q Consensus 554 ~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~--~~w~~L~~------~~~G~i~~~l~~~~p~ 613 (713)
...|.+-|.-.|..+...++|.-.+....+...... ..-..|.| ...|-|.+++++ +|.
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lEL-lP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLEL-LPN 152 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEe-ecC
Confidence 356888888888877778999999988777544333 22233433 246999999998 664
No 251
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.44 E-value=0.046 Score=62.96 Aligned_cols=108 Identities=18% Similarity=0.286 Sum_probs=79.3
Q ss_pred CCceEEEEEEEccCccccccCCCCCcEEEEEECC-------eEEEEEeee-CCCCCeeee-EEEEec----CCCeEEEEE
Q 005132 495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-------LKKRTKVIF-KTLNPQWHQ-TLEFPD----DGSPLTLHV 561 (713)
Q Consensus 495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~v~~-~t~nP~wne-~~~f~v----~~~~l~i~V 561 (713)
-.+.+.|+|++|+-|..++ ...||.|.+-+ ..++|+++. +++||+|+| .|.|.- .-..|+|.|
T Consensus 701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav 776 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV 776 (1189)
T ss_pred EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence 3478999999999887664 34899999943 356888876 579999996 788872 357899999
Q ss_pred EECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE--EecC
Q 005132 562 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR--KVPE 613 (713)
Q Consensus 562 ~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~--~~p~ 613 (713)
|+.. ..+||+-.+|++.+..+- +.+.|.+.. --.|.+.+.+ |+|.
T Consensus 777 yeEg----gK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl~lp~Lfv~i~~kdyvpd 828 (1189)
T KOG1265|consen 777 YEEG----GKFIGQRILPVDGLNAGY---RHVCLRSESNQPLTLPALFVYIVLKDYVPD 828 (1189)
T ss_pred eccC----CceeeeeccchhcccCcc---eeEEecCCCCCccccceeEEEEEeeccCCc
Confidence 9865 469999999999998763 455564321 2455655555 5665
No 252
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.19 E-value=0.032 Score=64.16 Aligned_cols=84 Identities=27% Similarity=0.434 Sum_probs=68.2
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-C------CeEEeccCC--CCCCCccce-EEEEE--EeCCCceEEEEEEE
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-G------KIVQRTRTA--HSPNHVWNQ-KFELD--EIGGGECLMVKCYN 433 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-~------~~~~kT~~~--~t~nP~wne-~f~f~--v~~~~~~l~i~V~d 433 (713)
+.+.|+|+++.-|..++ ...||+|.+ | ...++|++. ++.||+|+| .|.|. +...-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 68999999999997665 348999998 2 247899999 899999985 46666 33346789999999
Q ss_pred ecCCCCceeEEEEEeccccccCC
Q 005132 434 EEIFGDENMGSARVNLEGLVEGS 456 (713)
Q Consensus 434 ~~~~~d~~lG~~~i~l~~l~~~~ 456 (713)
.. ..+||+-.+|+..+..+.
T Consensus 779 Eg---gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 779 EG---GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred cC---CceeeeeccchhcccCcc
Confidence 85 689999999999998765
No 253
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.75 E-value=0.15 Score=49.32 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=60.9
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEE--CCeE----EEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEEC
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH 564 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~ 564 (713)
..++|+|+.++++.. .....+-||++.+ |++. ..|+...-+.++.|||.+.|++. ...|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 478999999999986 2345677888655 5542 35555444567999999999872 67899999987
Q ss_pred CCCC----------------CCCeeEEEEEEceec
Q 005132 565 NALL----------------ASSSIGDCVVEYQRL 583 (713)
Q Consensus 565 d~~~----------------~d~~iG~~~i~L~~l 583 (713)
.... .+..||.+.++|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 6422 246788888887654
No 254
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.74 E-value=0.3 Score=45.96 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=79.6
Q ss_pred cEEEEEEEEeEcCCCCCC--CCCCCcEEEEEE--CCeEEeccCC-CCCCCccceEEEEEEeCC--------------Cce
Q 005132 366 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQY--GKIVQRTRTA-HSPNHVWNQKFELDEIGG--------------GEC 426 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~--~g~~dpyv~v~l--~~~~~kT~~~-~t~nP~wne~f~f~v~~~--------------~~~ 426 (713)
..|+++|..++-....-. .+..+.-..+.+ +++.++|+.+ -+.+|.|+|.|-|.+... .+.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 479999999987632111 145555555554 8999999999 999999999999997653 246
Q ss_pred EEEEEEEecCC-CCceeEEEEEeccccccCCeeeeee--eceec------ccceEEEEEEEEe
Q 005132 427 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWV--PLEKV------NTGELRLQIEATR 480 (713)
Q Consensus 427 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~--~L~~~------~~G~I~l~l~~~~ 480 (713)
|.+.|..-+.. ...++|...+..+.+........++ .|.+. ..|-+.++++..|
T Consensus 89 ihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 89 IHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred eEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 78888777665 4578899999888877655432233 33332 3466777776653
No 255
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.66 E-value=0.17 Score=48.01 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=60.4
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEE--CCeE----EEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEEC
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH 564 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~ 564 (713)
..++|.|+.++++... ..+|-||++.+ |++. ..|+.+.- .++.|||.+.|++. ...|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 4688999999998764 35688999866 4432 23443333 57999999999972 67899999987
Q ss_pred CCCC----CCCeeEEEEEEceec
Q 005132 565 NALL----ASSSIGDCVVEYQRL 583 (713)
Q Consensus 565 d~~~----~d~~iG~~~i~L~~l 583 (713)
..-. ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 124699999998764
No 256
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.36 E-value=0.29 Score=47.37 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=60.8
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCe----EEeccCC-CCCCCccceEEEEEEeC---C-CceEEEEEEEec
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEIG---G-GECLMVKCYNEE 435 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~----~~kT~~~-~t~nP~wne~f~f~v~~---~-~~~l~i~V~d~~ 435 (713)
.++|+|+.+.++.. .....+-||++.+ |++ ...|+.+ .+.++.|||..+|.+.- + ...|.|.+|+..
T Consensus 9 ~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 68999999999975 2344667777655 655 3467666 66789999999998643 2 789999999865
Q ss_pred CC-----------------CCceeEEEEEeccc
Q 005132 436 IF-----------------GDENMGSARVNLEG 451 (713)
Q Consensus 436 ~~-----------------~d~~lG~~~i~l~~ 451 (713)
.. .+..||.+.++|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEc
Confidence 32 13578888887766
No 257
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.23 E-value=1.1 Score=41.66 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=77.1
Q ss_pred CCceEEEEEEEccCccccccCCCCCcEEEEEECCeE---EEEEee-eCCCCCeeeeEEEEec-----------CCCeEEE
Q 005132 495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK---KRTKVI-FKTLNPQWHQTLEFPD-----------DGSPLTL 559 (713)
Q Consensus 495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~v~-~~t~nP~wne~~~f~v-----------~~~~l~i 559 (713)
....+.+.+.+..+++. ....-||+...++.. ..|... -.+-.-.|||.|.+++ ....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 34677888999988876 223445555555543 344433 3455688999999986 2456899
Q ss_pred EEEECCCCCCCCeeEEEEEEceecCCC--CceeeEEEcCCC--CCcEEEEEEEE
Q 005132 560 HVRDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQGV--RKGEIHVLITR 609 (713)
Q Consensus 560 ~V~D~d~~~~d~~iG~~~i~L~~l~~~--~~~~~w~~L~~~--~~G~i~~~l~~ 609 (713)
.|+....-++...+|.+.|+|+++... .+...-++|... ....|.++|++
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~ 134 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISL 134 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEE
Confidence 998875433336999999999999763 566777888754 45888888887
No 258
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.13 E-value=1.1 Score=41.65 Aligned_cols=114 Identities=17% Similarity=0.250 Sum_probs=79.7
Q ss_pred cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe---EEeccCC--CCCCCccceEEEEEEeC---C------CceEEEEE
Q 005132 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI---VQRTRTA--HSPNHVWNQKFELDEIG---G------GECLMVKC 431 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~---~~kT~~~--~t~nP~wne~f~f~v~~---~------~~~l~i~V 431 (713)
..+.++|++..+++. .....||+..-++. ..+|... .+..-.||+.|.+.+.- . ...+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 368899999999876 22334444444544 3566666 67778999999988532 1 34788899
Q ss_pred EEecCC-CCceeEEEEEeccccccC--Ceeeeeeeceec--ccceEEEEEEEEeecC
Q 005132 432 YNEEIF-GDENMGSARVNLEGLVEG--SVRDIWVPLEKV--NTGELRLQIEATRVDD 483 (713)
Q Consensus 432 ~d~~~~-~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~--~~G~I~l~l~~~~~~~ 483 (713)
+..... +...+|.+.++|.++... .....-++|... ....|.+++.+..+..
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRE 139 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECcc
Confidence 887433 236999999999999874 456677788765 3567888888776543
No 259
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.05 E-value=0.18 Score=47.96 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=52.0
Q ss_pred CCCCCcEEEEEE--CCeE----EEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCCCCCCCeeEEEEEEcee
Q 005132 515 RGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNALLASSSIGDCVVEYQR 582 (713)
Q Consensus 515 ~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~d~~~~d~~iG~~~i~L~~ 582 (713)
...+|-||++.+ ++.. ..|....-+..+.|||.+.|++. +..|.|+|||.+..++...+|.++++|-+
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 345788888866 4432 35554444567889999999972 67899999998876667799999999876
Q ss_pred c
Q 005132 583 L 583 (713)
Q Consensus 583 l 583 (713)
-
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 5
No 260
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.04 E-value=0.23 Score=47.17 Aligned_cols=86 Identities=17% Similarity=0.112 Sum_probs=60.2
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEE--CCe----EEEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEEC
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDL----KKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH 564 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~----~~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~ 564 (713)
..++|.+....++... .....+-||++.+ |++ ...|.......++.|||.+.|++. ...|.|.||+.
T Consensus 8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 4567778887777652 1234677777755 443 223433333468999999999972 67899999998
Q ss_pred CCCC--CCCeeEEEEEEceec
Q 005132 565 NALL--ASSSIGDCVVEYQRL 583 (713)
Q Consensus 565 d~~~--~d~~iG~~~i~L~~l 583 (713)
+..+ .+..||.+.++|-+.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 7654 467999999998765
No 261
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.03 E-value=0.4 Score=45.54 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=61.1
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCe----EEeccCCCCCCCccceEEEEEEeC----CCceEEEEEEEecC
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTAHSPNHVWNQKFELDEIG----GGECLMVKCYNEEI 436 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~----~~kT~~~~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~ 436 (713)
.++|+|+++.++...+ ..+-||++.+ |++ ...|+.+...++.|||..+|.+.- ....|.|.+|+...
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCCCCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence 6899999999997542 4578888765 654 335655533689999999998643 27899999999764
Q ss_pred C-----CCceeEEEEEecccc
Q 005132 437 F-----GDENMGSARVNLEGL 452 (713)
Q Consensus 437 ~-----~d~~lG~~~i~l~~l 452 (713)
. ....+|.+.++|-+.
T Consensus 86 ~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 86 RKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ccCCCCceEEEEEEEEEEECC
Confidence 2 124699999998773
No 262
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.99 E-value=0.2 Score=48.35 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=64.7
Q ss_pred CceEEEEEEEccCccccccCCCCCcEEEEEE--CCeE----EEEEeee--C--CCCCeeeeEEEEecC------CCeEEE
Q 005132 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIF--K--TLNPQWHQTLEFPDD------GSPLTL 559 (713)
Q Consensus 496 ~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~--~--t~nP~wne~~~f~v~------~~~l~i 559 (713)
...++|+|..+++++........|-|+.+.+ |++. ..|+... + ...+.|||.+.|++. ...|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3568899999999998876667889999866 5542 2443321 2 235779999999972 678999
Q ss_pred EEEECCCCC---------CCCeeEEEEEEceec
Q 005132 560 HVRDHNALL---------ASSSIGDCVVEYQRL 583 (713)
Q Consensus 560 ~V~D~d~~~---------~d~~iG~~~i~L~~l 583 (713)
.+|+....+ .+..||.+.++|-+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999877644 356899999998764
No 263
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.61 E-value=0.74 Score=43.66 Aligned_cols=85 Identities=19% Similarity=0.221 Sum_probs=60.8
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCe----EEeccCC-CCCCCccceEEEEEEeC---C-CceEEEEEEEec
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEIG---G-GECLMVKCYNEE 435 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~----~~kT~~~-~t~nP~wne~f~f~v~~---~-~~~l~i~V~d~~ 435 (713)
.++|+++...++... .....+-||++.+ |++ ...|... ...++.|||..+|.+.- + ...|.|.+|+.+
T Consensus 9 ~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 578888888887641 1234566776655 554 3455555 55789999999998543 2 789999999976
Q ss_pred CC---CCceeEEEEEecccc
Q 005132 436 IF---GDENMGSARVNLEGL 452 (713)
Q Consensus 436 ~~---~d~~lG~~~i~l~~l 452 (713)
.. .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 54 357999999998874
No 264
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.07 E-value=1.2 Score=37.66 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=61.2
Q ss_pred CCcEEEEEECC-eEEeccCCCCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeEEEEEeccccccCCeeeeeeece
Q 005132 387 CDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLE 465 (713)
Q Consensus 387 ~dpyv~v~l~~-~~~kT~~~~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 465 (713)
.+..+.+.+++ .+..|.-..-.+..|++.|.+.. +.+..|.|.||-+|. ..+-|...+.|++... ....+|+
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~s~q~WDQ~Fti~L-dRsRELEI~VywrD~--RslCav~~lrLEd~~~----~~~~~le 81 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPKSNQAWDQSFTLEL-ERSRELEIAVYWRDW--RSLCAVKFLKLEDERH----EVQLDME 81 (98)
T ss_pred cceEEEEEEcCeEEeeccccccccccccceeEEEe-ecccEEEEEEEEecc--hhhhhheeeEhhhhcc----cceeccc
Confidence 67788899965 68888887557899999999994 568889999998765 4566777788888422 2334444
Q ss_pred ecccceEEEEEEE
Q 005132 466 KVNTGELRLQIEA 478 (713)
Q Consensus 466 ~~~~G~I~l~l~~ 478 (713)
++|.+...+.|
T Consensus 82 --pqg~l~~ev~f 92 (98)
T cd08687 82 --PQLCLVAELTF 92 (98)
T ss_pred --cccEEEEEEEe
Confidence 46777777766
No 265
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=91.65 E-value=1.2 Score=37.65 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=57.0
Q ss_pred CCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEc
Q 005132 518 SDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 595 (713)
Q Consensus 518 ~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L 595 (713)
++-.+.+.+.+. ..+|.- +.-.+..||+.|.+..+ +..|.|.||-+|- ....|-..+.|.+... ..-++|
T Consensus 9 ~eV~avLklDn~~VgqT~W-k~~s~q~WDQ~Fti~LdRsRELEI~VywrD~---RslCav~~lrLEd~~~----~~~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQW-KPKSNQAWDQSFTLELERSRELEIAVYWRDW---RSLCAVKFLKLEDERH----EVQLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeeccc-cccccccccceeEEEeecccEEEEEEEEecc---hhhhhheeeEhhhhcc----cceecc
Confidence 566777888774 445543 22357899999999986 7899999998775 2356777777777322 233333
Q ss_pred CCCCCcEEEEEEEE
Q 005132 596 QGVRKGEIHVLITR 609 (713)
Q Consensus 596 ~~~~~G~i~~~l~~ 609 (713)
.+.|.+...++|
T Consensus 81 --epqg~l~~ev~f 92 (98)
T cd08687 81 --EPQLCLVAELTF 92 (98)
T ss_pred --ccccEEEEEEEe
Confidence 377899888887
No 266
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=91.12 E-value=0.91 Score=43.23 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=59.2
Q ss_pred CCCCcEEEEEE--CCe----EEeccCC-CCCCCccceEEEEEEeC---C-CceEEEEEEEecCC-CCceeEEEEEecccc
Q 005132 385 GKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEIG---G-GECLMVKCYNEEIF-GDENMGSARVNLEGL 452 (713)
Q Consensus 385 g~~dpyv~v~l--~~~----~~kT~~~-~t~nP~wne~f~f~v~~---~-~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l 452 (713)
..++-||++.+ |++ ...|+.+ -+..+.|||...|.+.- + ...|.|.||+.... ....+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 44677887766 544 3466666 66789999999999654 2 78999999998755 567899999998774
Q ss_pred ccCCeeeeeeeceecccceEEEEEEE
Q 005132 453 VEGSVRDIWVPLEKVNTGELRLQIEA 478 (713)
Q Consensus 453 ~~~~~~~~w~~L~~~~~G~I~l~l~~ 478 (713)
.+. | .+|...+.+..
T Consensus 108 -~g~-------L---r~G~~~l~lw~ 122 (159)
T cd08397 108 -DGT-------L---RRGRQKLRVWP 122 (159)
T ss_pred -CCc-------E---ecCCEEEEEEe
Confidence 221 1 24777777753
No 267
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=90.94 E-value=0.36 Score=49.53 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=80.1
Q ss_pred CCCceEEEEEEEccCccccc--cCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCC
Q 005132 494 SGNGWIELVIVEARDLVAAD--LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA 569 (713)
Q Consensus 494 ~~~~~L~v~v~~a~~L~~~d--~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~d~~~~ 569 (713)
...|.|.++++.+|+|.... .+-+-+-||.+....+ +.+|.+......=.|.|+|...+. ...+.+-||.|+.--+
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~vl~~lvySW~pq~R 127 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIEVLHYLVYSWPPQRR 127 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccceeeeEEEeecCchhh
Confidence 45699999999999996443 4567799999998775 567777776667779999999874 7889999999988666
Q ss_pred CCeeEEEEEEceecCCCCceeeEEEcCCCCCcEEEEEEEE
Q 005132 570 SSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 609 (713)
Q Consensus 570 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~~~l~~ 609 (713)
+++.-...+.+..++.. ...+-+.|+=.++|++-+.+.+
T Consensus 128 HKLC~~g~l~~~~v~rq-spd~~~Al~lePrgq~~~r~~~ 166 (442)
T KOG1452|consen 128 HKLCHLGLLEAFVVDRQ-SPDRVVALYLEPRGQPPLRLPL 166 (442)
T ss_pred ccccccchhhhhhhhhc-CCcceeeeecccCCCCceeccc
Confidence 66544434444433322 2233444544566766666554
No 268
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.36 E-value=1.6 Score=42.28 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=43.3
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEE--CCe---EEEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECC
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDL---KKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHN 565 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~---~~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~d 565 (713)
..++|.|..+.+ +..+......-||++.+ |+. ..+|....-+.+|.|||.+.|++. ...|.|.||+..
T Consensus 10 ~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 356777777763 33322223345666543 443 235555555667999999999972 678999999874
No 269
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.88 E-value=2 Score=41.63 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=46.3
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCeE---EeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEec
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV---QRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE 435 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~~---~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~ 435 (713)
.++|+|+++.++. .+......-||++.+ |+.. .+|... -+.++.|||...|.+.- ....|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 5888888887442 222333446666644 6552 356666 67789999999998643 2789999999863
No 270
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=89.77 E-value=2.8 Score=40.92 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=41.6
Q ss_pred EEEEeecCCCCCCcccceEEEEEecC---CceEEEEEEEeCCCCCcc-ceeEEEEEEccc
Q 005132 227 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY-DYLTSCEVKMKY 282 (713)
Q Consensus 227 ~~~tt~i~~~~nP~WnEtf~~~v~~~---~~~L~~~v~d~d~~~~~d-d~lG~~~i~l~~ 282 (713)
.+++.+...+.+|.|||++-+.+... ...|.|..++......++ ..+|.+.++|-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 45777788889999999999987553 569999998865421122 368988888753
No 271
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.30 E-value=1.8 Score=41.77 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=61.9
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCe----EEeccCC-----CCCCCccceEEEEEEeC---C-CceEEEEE
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-----HSPNHVWNQKFELDEIG---G-GECLMVKC 431 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~----~~kT~~~-----~t~nP~wne~f~f~v~~---~-~~~l~i~V 431 (713)
.+.|+|..+.+++........+-|+++.+ |++ ...|+.. -...+.|||..+|.+.- + ...|.|.+
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 68999999999987655456778887755 654 2345432 23357799999998643 2 78999999
Q ss_pred EEecCC----------CCceeEEEEEecccc
Q 005132 432 YNEEIF----------GDENMGSARVNLEGL 452 (713)
Q Consensus 432 ~d~~~~----------~d~~lG~~~i~l~~l 452 (713)
|+.... .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 986543 246889999988773
No 272
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.18 E-value=2.7 Score=39.12 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=39.9
Q ss_pred EEEeeeCC-CCCeeeeEEEEec------CCCeEEEEEEECCCCCCC----CeeEEEEEEceec
Q 005132 532 RTKVIFKT-LNPQWHQTLEFPD------DGSPLTLHVRDHNALLAS----SSIGDCVVEYQRL 583 (713)
Q Consensus 532 kT~v~~~t-~nP~wne~~~f~v------~~~~l~i~V~D~d~~~~d----~~iG~~~i~L~~l 583 (713)
.|+...-+ .++.|||.+.|++ ....|.|.||+.+....+ ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56656655 7999999999996 367899999988776555 6899999998765
No 273
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=88.69 E-value=3.7 Score=40.17 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=41.2
Q ss_pred EEEEeecCCCCCCcccceEEEEEecC---CceEEEEEEEeCCCCCcc---ceeEEEEEEcc
Q 005132 227 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY---DYLTSCEVKMK 281 (713)
Q Consensus 227 ~~~tt~i~~~~nP~WnEtf~~~v~~~---~~~L~~~v~d~d~~~~~d---d~lG~~~i~l~ 281 (713)
.+++.+...+.+|.|+|++-+.+... +..|.|.+++......+| ..+|.+.++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 46777778889999999999887543 569999998865322233 36888888875
No 274
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=86.49 E-value=1.3 Score=45.61 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=70.9
Q ss_pred ccEEEEEEEEeEcCCC--CCCCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CC
Q 005132 365 GRKINVTVVEGKDLMP--KDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GD 439 (713)
Q Consensus 365 ~g~L~V~I~~a~~L~~--~~~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d 439 (713)
.|+|.++++.+|+|.. ....-..+-||.+..+.+ ..+|.+. ....-.|.|+|+.++.. ...+.+-||.++.- +.
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RH 128 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRH 128 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhhc
Confidence 3799999999999943 333456788999998754 5666665 56666788999887543 45667778877654 33
Q ss_pred ce--eEEEEEeccccccCCeeeeeeeceecccceEEEEEEEE
Q 005132 440 EN--MGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT 479 (713)
Q Consensus 440 ~~--lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~l~l~~~ 479 (713)
++ .| .+.+..+.. ...++.+.|.-.++|.+.+.+.+.
T Consensus 129 KLC~~g--~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 129 KLCHLG--LLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPLA 167 (442)
T ss_pred cccccc--hhhhhhhhh-cCCcceeeeecccCCCCceecccC
Confidence 32 33 222222222 222344555555678888888654
No 275
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=85.70 E-value=6.3 Score=38.51 Aligned_cols=51 Identities=22% Similarity=0.222 Sum_probs=38.9
Q ss_pred EEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC--C-CceeEEEEEec
Q 005132 399 VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF--G-DENMGSARVNL 449 (713)
Q Consensus 399 ~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~--~-d~~lG~~~i~l 449 (713)
.++|.+. ++.+|.|+|++.+.++.. ...|.|++++.... + ...+|.+-+||
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 6788888 999999999999998764 77899988875433 1 24567666666
No 276
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=85.47 E-value=3.5 Score=36.45 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=48.3
Q ss_pred EEEEEECC-eEEEEEeeeCCCCCeeeeEEEEecC----------CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCC--
Q 005132 521 YVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD----------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ-- 587 (713)
Q Consensus 521 yv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~----------~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~-- 587 (713)
||.+.+-. +.+.|.++. ..+|.+|-+-.|.|. ...+.|+++..- ....+.+|.+.+++..+....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCCc
Confidence 55555544 566777777 789999998888872 578999998754 233578999999999885332
Q ss_pred ceeeEEEcC---CCCCcEEEEEEEEEec
Q 005132 588 MADKWIPLQ---GVRKGEIHVLITRKVP 612 (713)
Q Consensus 588 ~~~~w~~L~---~~~~G~i~~~l~~~~p 612 (713)
....-..|. +..-|.|.+.++++.|
T Consensus 80 ~i~~~~~l~g~~~~~~g~l~y~~rl~~P 107 (107)
T PF11618_consen 80 RIHGSATLVGVSGEDFGTLEYWIRLRVP 107 (107)
T ss_dssp -EEEEEEE-BSSS-TSEEEEEEEEEEE-
T ss_pred eEEEEEEEeccCCCeEEEEEEEEEecCC
Confidence 344444554 3445888888887654
No 277
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=84.02 E-value=4.3 Score=35.32 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=45.2
Q ss_pred EEEEEEEccCccccccCCCCCcEEEEEE--CCeE----EEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCC
Q 005132 499 IELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNA 566 (713)
Q Consensus 499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~d~ 566 (713)
+.+.+...++.........+|-||++.+ |++. ..|+.+.-...+.|||.+.|++. ...|.+.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5566666666655433333688888866 4442 34544443456899999999972 6789999998653
No 278
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=83.73 E-value=8.8 Score=37.64 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=39.8
Q ss_pred EEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC--CC---ceeEEEEEecc
Q 005132 399 VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF--GD---ENMGSARVNLE 450 (713)
Q Consensus 399 ~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~--~d---~~lG~~~i~l~ 450 (713)
.++|-+. ++.+|.|+|++.+.++.. ...|.|++++.... +| ..+|.+-+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 7888888 999999999999998763 77999999875433 22 45676666663
No 279
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=83.64 E-value=5.2 Score=37.20 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=40.2
Q ss_pred EeccCC-CC-CCCccceEEEEEEeC----CCceEEEEEEEecCC-CC----ceeEEEEEecccc
Q 005132 400 QRTRTA-HS-PNHVWNQKFELDEIG----GGECLMVKCYNEEIF-GD----ENMGSARVNLEGL 452 (713)
Q Consensus 400 ~kT~~~-~t-~nP~wne~f~f~v~~----~~~~l~i~V~d~~~~-~d----~~lG~~~i~l~~l 452 (713)
..|+.. .+ .++.|||..+|.+.- ....|.|.||..+.. .+ ..||.+.++|-+.
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 366666 55 799999999999643 378999999998776 33 6899999998875
No 280
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=83.40 E-value=3 Score=40.69 Aligned_cols=56 Identities=9% Similarity=0.085 Sum_probs=34.8
Q ss_pred EEEEeecCCCCCCcccceEEEEEecC---CceEEEEEEEeCCCCCcc--ceeEEEEEEccc
Q 005132 227 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY--DYLTSCEVKMKY 282 (713)
Q Consensus 227 ~~~tt~i~~~~nP~WnEtf~~~v~~~---~~~L~~~v~d~d~~~~~d--d~lG~~~i~l~~ 282 (713)
...+++...+.+|.|+|+|-+.+... +..|.|.+|+......++ ..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45666677889999999999988654 569999999987542233 599999999987
No 281
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=81.55 E-value=8.3 Score=33.52 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=46.6
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCe----EEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEec
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE 435 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~----~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~ 435 (713)
+.+.+..+.+..........+-||++.+ |++ ...|+.+ -...+.|||...|.+.- ....|.|.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5567777777754433223578888765 654 3356666 56679999999998543 2789999999864
No 282
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=79.24 E-value=6.4 Score=37.83 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=53.4
Q ss_pred CCCcEEEEEECC-eEEeccCC---CCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeEEEEEeccccc
Q 005132 386 KCDPYVKLQYGK-IVQRTRTA---HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLV 453 (713)
Q Consensus 386 ~~dpyv~v~l~~-~~~kT~~~---~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~ 453 (713)
...-|+++.+++ ++.+|+.. ....-.||+.|.+.+..--..|.++||......+..|+.+.+|+-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 356789999965 47777776 333446689999998777889999999988778999999999976654
No 283
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=79.06 E-value=24 Score=34.39 Aligned_cols=56 Identities=7% Similarity=0.023 Sum_probs=41.1
Q ss_pred EEEEeecCCCCCCcccceEEEEEecC---CceEEEEEEEeCCCC-C-------ccceeEEEEEEccc
Q 005132 227 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGH-V-------KYDYLTSCEVKMKY 282 (713)
Q Consensus 227 ~~~tt~i~~~~nP~WnEtf~~~v~~~---~~~L~~~v~d~d~~~-~-------~dd~lG~~~i~l~~ 282 (713)
...+.+...+.+|.|+|++-+.+... ...|.|..|+..-.. . ....+|-+.++|-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 55677777889999999999887543 569999999976211 1 12368888888765
No 284
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=78.19 E-value=7.6 Score=37.86 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=33.4
Q ss_pred eEEEEEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCC---CeeEEEEEEcee
Q 005132 529 LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLAS---SSIGDCVVEYQR 582 (713)
Q Consensus 529 ~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~~~d---~~iG~~~i~L~~ 582 (713)
....|.+...+.+|.|+|+|-+.++ +..|.|++++...-.+. ..+|-+.+||.+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3568888999999999999998863 56799999987653322 689999999887
No 285
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=75.30 E-value=18 Score=31.98 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=45.8
Q ss_pred EEEEEECC-eEEeccCCCCCCCccceEEEEEEeCC--------CceEEEEEEEecCCCCceeEEEEEeccccccCCe--e
Q 005132 390 YVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGG--------GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSV--R 458 (713)
Q Consensus 390 yv~v~l~~-~~~kT~~~~t~nP~wne~f~f~v~~~--------~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~--~ 458 (713)
||.+.+-+ +.+.|.++.+.+|.+|-+-.|.+..+ ...+.++++......-..+|.+.+++..+.+... .
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~i 81 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGERI 81 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--E
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCceE
Confidence 56666643 45566655889999999999998664 4689999998764466799999999999985443 2
Q ss_pred eeeeeceec---ccceEEEEEEE
Q 005132 459 DIWVPLEKV---NTGELRLQIEA 478 (713)
Q Consensus 459 ~~w~~L~~~---~~G~I~l~l~~ 478 (713)
.....|.+. .-|.|...++.
T Consensus 82 ~~~~~l~g~~~~~~g~l~y~~rl 104 (107)
T PF11618_consen 82 HGSATLVGVSGEDFGTLEYWIRL 104 (107)
T ss_dssp EEEEEE-BSSS-TSEEEEEEEEE
T ss_pred EEEEEEeccCCCeEEEEEEEEEe
Confidence 223333332 23555555443
No 286
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=73.55 E-value=53 Score=31.53 Aligned_cols=66 Identities=11% Similarity=0.239 Sum_probs=50.6
Q ss_pred CcEEEEEeC-c-EEEEeec--CCCCCCcccceEEEEEecCCceEEEEEEEeCCCCCccceeEEEEEEccccc
Q 005132 217 TTFVEIELE-E-LTRRTDA--RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 284 (713)
Q Consensus 217 dpyv~v~~g-~-~~~tt~i--~~~~nP~WnEtf~~~v~~~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~ 284 (713)
.=|++|.+. + +.+|... ..+..=.+||.|.+.+...-+.|.++||.... ..+..|+.+.+++-...
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~--~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG--LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC--ccceEEEEEEeeCCCCc
Confidence 459999995 3 3444443 24455678999999998889999999999884 57889999999986544
No 287
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.04 E-value=7.4 Score=44.81 Aligned_cols=166 Identities=12% Similarity=0.062 Sum_probs=93.3
Q ss_pred CCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeEEEEEecccccc-CCeeee
Q 005132 385 GKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGSARVNLEGLVE-GSVRDI 460 (713)
Q Consensus 385 g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~-~~~~~~ 460 (713)
...+||+.|.+... ...+.+. .+..|.|+++|...+. ....+.|.|+..... .+.....+++-.+++.. ......
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~ 104 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRL 104 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhh
Confidence 34689999988643 4455556 8999999999999944 456677888776432 23333333333333332 123456
Q ss_pred eeeceecccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCC-CcEEEEEECCeEEEEEeeeCC
Q 005132 461 WVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTS-DPYVKVQYGDLKKRTKVIFKT 539 (713)
Q Consensus 461 w~~L~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~-DPyv~v~~~~~~~kT~v~~~t 539 (713)
|..++. .|++...+.+......... .......+ .+......|.. .-=| .++.+.++...-.+.-
T Consensus 105 w~~~~~--~g~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~rrga~~~~kV-hei~gH~F~aT~l~Qp 169 (694)
T KOG0694|consen 105 WVLIEE--LGTLLKPAALTGTLEPGRT--KSVFSPEP----------FFSKPRRRGAISQSKV-HEIDGHKFGATSLRQP 169 (694)
T ss_pred cccccc--ccceeeeecccCcCCcCcc--ccccccCc----------cccCccccccccccee-EEeeCcEEEEeeccCc
Confidence 888765 4888888876532221110 00000000 11000001111 1111 5555555544445555
Q ss_pred CCCeeeeEEEEecCCCeEEEEEEECCC
Q 005132 540 LNPQWHQTLEFPDDGSPLTLHVRDHNA 566 (713)
Q Consensus 540 ~nP~wne~~~f~v~~~~l~i~V~D~d~ 566 (713)
..-.|...|.+.+..+.+.++|+.++.
T Consensus 170 t~Cs~C~kFi~gL~kqGyQCqvC~~vv 196 (694)
T KOG0694|consen 170 TFCSWCQKFIWGLRKQGYQCQVCWRVV 196 (694)
T ss_pred chhhhhhhheeccCCCceEEeeeeehH
Confidence 567799999999977889998887664
No 288
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=67.60 E-value=43 Score=35.38 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=76.8
Q ss_pred CccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCC--ccceEEEEEEeCCCceEEEEEEEecCCCCc
Q 005132 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNH--VWNQKFELDEIGGGECLMVKCYNEEIFGDE 440 (713)
Q Consensus 364 ~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP--~wne~f~f~v~~~~~~l~i~V~d~~~~~d~ 440 (713)
..-.|-|.|++..++.. ....|+.+..|+...+|..+ -+..- .-.+.....+......|++.+|-..-.+..
T Consensus 56 RkF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~ 130 (508)
T PTZ00447 56 RTFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKV 130 (508)
T ss_pred ceeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccccee
Confidence 34568888888877643 34679999999999999777 32222 223444455555578999999987766888
Q ss_pred eeEEEEEeccc-cccCC-eeeeeeeceecc--cceEEEEEE
Q 005132 441 NMGSARVNLEG-LVEGS-VRDIWVPLEKVN--TGELRLQIE 477 (713)
Q Consensus 441 ~lG~~~i~l~~-l~~~~-~~~~w~~L~~~~--~G~I~l~l~ 477 (713)
-||.+.+.+.. +..+. +.+.||.+...+ .++|.+|+.
T Consensus 131 hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 131 HIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred EEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEeh
Confidence 99999999865 44433 678999997543 466666663
No 289
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=66.91 E-value=14 Score=35.85 Aligned_cols=54 Identities=7% Similarity=0.087 Sum_probs=39.0
Q ss_pred EEeecCCCCCCcccceEEEEEecC---CceEEEEEEEeCCCC----CccceeEEEEEEccc
Q 005132 229 RRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGH----VKYDYLTSCEVKMKY 282 (713)
Q Consensus 229 ~tt~i~~~~nP~WnEtf~~~v~~~---~~~L~~~v~d~d~~~----~~dd~lG~~~i~l~~ 282 (713)
.++++..+.+|.|+|+|-+.+... +..|.|.+|+..... .....+|.+.++|-+
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444448999999999887443 679999999987431 123489999988865
No 290
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=57.84 E-value=38 Score=32.81 Aligned_cols=52 Identities=10% Similarity=0.160 Sum_probs=37.7
Q ss_pred EEEEEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCC-----CCCeeEEEEEEcee
Q 005132 530 KKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALL-----ASSSIGDCVVEYQR 582 (713)
Q Consensus 530 ~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~~-----~d~~iG~~~i~L~~ 582 (713)
.++|-+..+ .+|.|+|++-..++ ...|.+++++...-. ....+|-+.+||-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444445 89999999988873 667999999866432 25678888888775
No 291
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=57.84 E-value=37 Score=32.98 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=40.2
Q ss_pred eEEEEEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCC------CCeeEEEEEEcee
Q 005132 529 LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLA------SSSIGDCVVEYQR 582 (713)
Q Consensus 529 ~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~~~------d~~iG~~~i~L~~ 582 (713)
....|.|...+.+|.|+|++-..++ ...|.|+.++.+.-.+ ...+|-+.+||-.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4578899999999999999988873 5679999987543211 2457887777764
No 292
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=57.78 E-value=31 Score=33.52 Aligned_cols=56 Identities=7% Similarity=0.037 Sum_probs=41.2
Q ss_pred EEEEeecCCCCCCcccceEEEEEecC---CceEEEEEEEeCCCCCc-----cceeEEEEEEccc
Q 005132 227 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVK-----YDYLTSCEVKMKY 282 (713)
Q Consensus 227 ~~~tt~i~~~~nP~WnEtf~~~v~~~---~~~L~~~v~d~d~~~~~-----dd~lG~~~i~l~~ 282 (713)
...|.+...+.+|.|+|++-+.+... ...|.|+.|+.+-...+ ...+|-+.++|-.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 55677777889999999999987654 56999999996642111 2358888887754
No 293
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=52.05 E-value=1.2e+02 Score=33.09 Aligned_cols=122 Identities=13% Similarity=0.269 Sum_probs=69.8
Q ss_pred CCCcEEEEEECCeEEEEEeee--CC--CCC-ee-e--eEEEEec--------C------CCeEEEEEEECCC-----C-C
Q 005132 517 TSDPYVKVQYGDLKKRTKVIF--KT--LNP-QW-H--QTLEFPD--------D------GSPLTLHVRDHNA-----L-L 568 (713)
Q Consensus 517 ~~DPyv~v~~~~~~~kT~v~~--~t--~nP-~w-n--e~~~f~v--------~------~~~l~i~V~D~d~-----~-~ 568 (713)
++-.||+|.+.+-..+|..+. .. .+| .- + -.|++.- . ...|+|.||.-.. + .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 456799999988655554432 11 121 11 1 2444441 1 2579999998553 2 4
Q ss_pred CCCeeEEEEEEceec-CCCC---ceeeEEEcCCC-------CCcEEEEEEEEEecCCccccCCCCCCCc--ceeeecccc
Q 005132 569 ASSSIGDCVVEYQRL-PPNQ---MADKWIPLQGV-------RKGEIHVLITRKVPELDKRTSIDSDSSS--TRAHKISGQ 635 (713)
Q Consensus 569 ~d~~iG~~~i~L~~l-~~~~---~~~~w~~L~~~-------~~G~i~~~l~~~~p~~~~~~~~~~~~p~--~kv~~~~~~ 635 (713)
..++||.+.|+|+-- ..+. -+..|..|... ...+|++.+.. .|...-.-..+. +|. -.|..+++.
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~-EpDPRfVFQFdg-epecSPQV~QiqG~ 192 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRA-EPDPRFVFQFDG-EPECSPQVFQIQGN 192 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEec-cCCCeeEEEcCC-ccccCcEEEEecCc
Confidence 567999999998722 1222 36789999643 24788888876 443222111221 222 356677777
Q ss_pred hhhhh
Q 005132 636 MKQMM 640 (713)
Q Consensus 636 ~r~~l 640 (713)
+||-+
T Consensus 193 ~rQPv 197 (460)
T PF06219_consen 193 IRQPV 197 (460)
T ss_pred cccce
Confidence 77433
No 294
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=51.51 E-value=61 Score=31.65 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=40.0
Q ss_pred eEEEEEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCC--C-------CCCeeEEEEEEcee
Q 005132 529 LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNAL--L-------ASSSIGDCVVEYQR 582 (713)
Q Consensus 529 ~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~--~-------~d~~iG~~~i~L~~ 582 (713)
....|.|...+.+|.|+|++-..++ ...|.|+.++...- . ....+|-+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4678899999999999999988863 56799999986521 1 12457777777654
No 295
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=50.95 E-value=31 Score=39.12 Aligned_cols=95 Identities=15% Similarity=0.201 Sum_probs=69.5
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCCCCCCCccceEEEEEEeCCCceEEEEEEEecCC----CCcee
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIF----GDENM 442 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~----~d~~l 442 (713)
.+.|.|.+.++|+....+ .=.||...+.+.+.+|.......|.|+..=.|.-..+-..+++.+|..... .|..+
T Consensus 342 smevvvmevqglksvapn--rivyctmevegeklqtdqaeaskp~wgtqgdfstthplpvvkvklftestgvlaledkel 419 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPN--RIVYCTMEVEGEKLQTDQAEASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKEL 419 (1218)
T ss_pred eeeEEEeeeccccccCCC--eeEEEEEEecccccccchhhhcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhh
Confidence 477888999999765533 347999999888888887766789999888887666778889999887654 78899
Q ss_pred EEEEEeccccccCCeeeeeeece
Q 005132 443 GSARVNLEGLVEGSVRDIWVPLE 465 (713)
Q Consensus 443 G~~~i~l~~l~~~~~~~~w~~L~ 465 (713)
|.+.+.... .......|+.+.
T Consensus 420 grvil~ptp--ns~ks~ewh~mt 440 (1218)
T KOG3543|consen 420 GRVILQPTP--NSAKSPEWHTMT 440 (1218)
T ss_pred CeEEEecCC--CCcCCccceeee
Confidence 999875332 112234565543
No 296
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=48.86 E-value=3.5e+02 Score=29.77 Aligned_cols=92 Identities=22% Similarity=0.362 Sum_probs=54.3
Q ss_pred CCcEEEEEECCeEEeccCC---CCCCCcc------ceEEEEEE------eCC------CceEEEEEEEecCC-------C
Q 005132 387 CDPYVKLQYGKIVQRTRTA---HSPNHVW------NQKFELDE------IGG------GECLMVKCYNEEIF-------G 438 (713)
Q Consensus 387 ~dpyv~v~l~~~~~kT~~~---~t~nP~w------ne~f~f~v------~~~------~~~l~i~V~d~~~~-------~ 438 (713)
...||+|++.+...+|..+ ...++.- -..|.+.- ..+ ...|+|.||.-... .
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 4569999998876677666 3222221 23343331 011 25799999985542 4
Q ss_pred CceeEEEEEeccccc-cCC---eeeeeeeceecc-------cceEEEEEEE
Q 005132 439 DENMGSARVNLEGLV-EGS---VRDIWVPLEKVN-------TGELRLQIEA 478 (713)
Q Consensus 439 d~~lG~~~i~l~~l~-~~~---~~~~w~~L~~~~-------~G~I~l~l~~ 478 (713)
..+||.+.++++--- .+. -++-|+.+.+.. ..+|++.+..
T Consensus 116 ~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~ 166 (460)
T PF06219_consen 116 GKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRA 166 (460)
T ss_pred ceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEec
Confidence 589999999987321 122 256788776542 2455555543
No 297
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=42.62 E-value=65 Score=37.20 Aligned_cols=163 Identities=18% Similarity=0.226 Sum_probs=97.3
Q ss_pred CCcccceEEEeeeecCCCCCceeeeeeEeCC-----------CC--------CE-----EEEEEeEEeccCCceEE-EEE
Q 005132 15 KPRLIEKIELQEFSLGSTSPCLGLHGTRWSS-----------SG--------DQ-----RVMQLGFDWDANDISIL-LLA 69 (713)
Q Consensus 15 ~P~~i~~~~~~~f~lG~~pp~i~~v~~~~~~-----------~~--------d~-----~~~d~~~~~~~~~~~~~-l~~ 69 (713)
.=.+++.+.+.+.-||.+-|.+.+.++|.-. +. |. +.+-.+.+|.+++.... ..-
T Consensus 142 ~g~LL~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s 221 (1051)
T KOG3532|consen 142 AGRLLQEIRIRELELGTKFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVST 221 (1051)
T ss_pred hhhhhcccceehhhhccccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCcc
Confidence 3566889999999999999999999988611 00 11 22344555665554322 111
Q ss_pred eecCCccceeeEEEEeeEEEeEEEEEEEee-eeEEEEEeecCCeEEE--eeeecCCCCCccCCccCcChHHHHHHHHHHH
Q 005132 70 KLAKPLLGTAKIVINSLHIKGDLLVMPILE-GKAVLYSFVSIPDVRI--GVAFGSGGSQSLPATELPGVSNWLARLINET 146 (713)
Q Consensus 70 ~l~~~~~~~~~i~v~~~~~~G~~rv~~~l~-~~~v~~sf~~~P~v~~--~~~~g~~~~~~~~~~~~Pgl~~~~~~~i~~~ 146 (713)
-+++ ..-+.|+-....|-+|+.+-.- -..-+++|++.|++.. ...|-++-+++ -|.+-|...|...
T Consensus 222 ~~~k----k~S~~iKl~~l~Gm~r~~~~r~py~hw~~sf~G~P~~e~di~s~~qg~qLQ~-------~I~q~i~~~ir~~ 290 (1051)
T KOG3532|consen 222 IIAK----KASLSVKITKLTGMVRVILSRQPYHHWTFSFVGQPIFETDINSQIQGHQLQR-------LIPQIIKEAIRRS 290 (1051)
T ss_pred cccc----CCceeEEEEEeccceeEEEEeccceeeeeeeccCchhhhhhHHHHHHHHHHH-------HhHHHHHHHHHHH
Confidence 1111 2345566678899988865554 2334899999999873 33333331221 2456667777777
Q ss_pred hhcceecCcce----eecc-ccccc-------cccccccEEEEEEEeeCCCCCC
Q 005132 147 LVKTLVEPRRR----CYSL-PAVDL-------RKKAVGGIVYVRVISASKLSRS 188 (713)
Q Consensus 147 l~~~~v~P~~~----~~~l-~~~~l-------~~~~~~GvL~V~v~~A~~L~~~ 188 (713)
+...--|||+- .|-+ +..+. ..-...|.+.|++.+...|..-
T Consensus 291 ~~rKhT~pnyK~ry~pff~~~~~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~ 344 (1051)
T KOG3532|consen 291 LQRKHTWPNYKIRYRPFFPNPIFQASPPINSFTHIKMEGGIEVTVLECSRLKDK 344 (1051)
T ss_pred HHhhccCcchhhhccccccCcccccCcchhhhhheeccCceeEeehhhhhhhcc
Confidence 77778888861 1111 11110 1111249999999998888643
No 298
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=41.32 E-value=19 Score=42.86 Aligned_cols=98 Identities=14% Similarity=0.299 Sum_probs=75.5
Q ss_pred CCCCcEEEEEECCe-EEeccCC-CC-CCCccceEEEEEEeCCCceEEEEEEEecCCC-CceeEEEEEeccccccCCeeee
Q 005132 385 GKCDPYVKLQYGKI-VQRTRTA-HS-PNHVWNQKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDI 460 (713)
Q Consensus 385 g~~dpyv~v~l~~~-~~kT~~~-~t-~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~-d~~lG~~~i~l~~l~~~~~~~~ 460 (713)
...++|+.+.+... ..+|... +. .+|.|++.|+.........+.+.+.+.+..+ ...+|.+.+++..+..+.....
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccc
Confidence 34789999999654 6677777 65 7999999999887777889999998888775 8899999999999998887778
Q ss_pred eeeceecc-----c-ceEEEEEEEEeec
Q 005132 461 WVPLEKVN-----T-GELRLQIEATRVD 482 (713)
Q Consensus 461 w~~L~~~~-----~-G~I~l~l~~~~~~ 482 (713)
|+++-... . -.+.+++.|.+.+
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred eeeeeccCCccccCCcccceEEeeEeec
Confidence 88775421 2 2345556665543
No 299
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=40.98 E-value=17 Score=43.21 Aligned_cols=81 Identities=17% Similarity=0.311 Sum_probs=67.4
Q ss_pred CCCCcEEEEEECCe-EEEEEeeeCC-CCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceee
Q 005132 516 GTSDPYVKVQYGDL-KKRTKVIFKT-LNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADK 591 (713)
Q Consensus 516 g~~DPyv~v~~~~~-~~kT~v~~~t-~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~ 591 (713)
.+.++|+++.+... -.+|....+. .+|.|.+.|..... ...+.+.|-+.+..+....+|.+.++...+..+.....
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccc
Confidence 45799999999875 4578887777 69999999987764 56788899888887767799999999999988888899
Q ss_pred EEEcC
Q 005132 592 WIPLQ 596 (713)
Q Consensus 592 w~~L~ 596 (713)
|+++.
T Consensus 216 ~~~Il 220 (887)
T KOG1329|consen 216 WFPIL 220 (887)
T ss_pred eeeee
Confidence 99984
No 300
>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=38.57 E-value=3.1e+02 Score=27.44 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=35.4
Q ss_pred cceEEEeeeecCCCCCcee---eeeeEeCCCCCEEEEEEeEEeccCCceEEEEEeecCCccceeeEEEEeeEEEeEEEEE
Q 005132 19 IEKIELQEFSLGSTSPCLG---LHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVM 95 (713)
Q Consensus 19 i~~~~~~~f~lG~~pp~i~---~v~~~~~~~~d~~~~d~~~~~~~~~~~~~l~~~l~~~~~~~~~i~v~~~~~~G~~rv~ 95 (713)
+.++++..|++++--..+. ++....+...=.+.++|.+.|. .+.. .|.+.+.|+++.+...+++.
T Consensus 50 ~s~i~I~~~~lp~s~l~~~~~~gi~~~~s~~si~l~~~w~~~~~--------~i~~----~G~~~l~v~gv~i~~~l~l~ 117 (223)
T cd00025 50 LSNKEIQELKLPSSSIKLVEVKGLDLSISNVSIGLSGVWKYNYR--------FILD----GGNVELSVEGMNIQADLRLG 117 (223)
T ss_pred EEeEEEEEEecCCCceEEcCCCceEEEEeCCeEEEEEEEEEeeE--------EEEe----cEEEEEEEeEEEEEEEEEEe
Confidence 6778888888876543322 3332222110012333333332 1233 24788888888888888873
No 301
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.03 E-value=26 Score=40.54 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=37.1
Q ss_pred cCcEEEEEeC--cEEEEeecCCCCCCcccceEEEEEecCCceEEEEEEEeCC
Q 005132 216 LTTFVEIELE--ELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIP 265 (713)
Q Consensus 216 ~dpyv~v~~g--~~~~tt~i~~~~nP~WnEtf~~~v~~~~~~L~~~v~d~d~ 265 (713)
+|||+.|.+. ....+.+.+.+.+|.|+|+|...++. ...+.+.||+...
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~ 78 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSP 78 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCC
Confidence 5889999985 23344556789999999999998643 5678888887653
No 302
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=32.79 E-value=2.6e+02 Score=25.95 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=51.4
Q ss_pred CCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEec---------------CCCeEEEEEEECCCCCCCCeeEEEEEEc
Q 005132 516 GTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD---------------DGSPLTLHVRDHNALLASSSIGDCVVEY 580 (713)
Q Consensus 516 g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v---------------~~~~l~i~V~D~d~~~~d~~iG~~~i~L 580 (713)
...|-|..|++.++.++|+-.....-=.|+|.|.|.- ....+.++++....-. ...|+...-.+
T Consensus 18 ~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~n~ 96 (140)
T PF14909_consen 18 DKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEENT 96 (140)
T ss_pred CCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEeccc
Confidence 4568999999999999999887776666899999973 3678889888766543 45777776666
Q ss_pred eec
Q 005132 581 QRL 583 (713)
Q Consensus 581 ~~l 583 (713)
.++
T Consensus 97 rDf 99 (140)
T PF14909_consen 97 RDF 99 (140)
T ss_pred cce
Confidence 665
No 303
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=31.31 E-value=4.9e+02 Score=27.86 Aligned_cols=110 Identities=11% Similarity=0.118 Sum_probs=74.1
Q ss_pred CCCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCC--eeeeEEEEec--CCCeEEEEEEECCCCC
Q 005132 493 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNP--QWHQTLEFPD--DGSPLTLHVRDHNALL 568 (713)
Q Consensus 493 ~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP--~wne~~~f~v--~~~~l~i~V~D~d~~~ 568 (713)
......|-|.|.+-.++.. ...-|+.+..|....+|..+.-+..= .-+|.....+ ...+|++.|+-.. +.
T Consensus 54 nHRkF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKk-Lv 127 (508)
T PTZ00447 54 NYRTFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTK-LT 127 (508)
T ss_pred ccceeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecc-cc
Confidence 3555677778777766643 34679999999988888655432221 2234444444 2678999999765 45
Q ss_pred CCCeeEEEEEEcee--cCCCCceeeEEEcC--CCCCcEEEEEEE
Q 005132 569 ASSSIGDCVVEYQR--LPPNQMADKWIPLQ--GVRKGEIHVLIT 608 (713)
Q Consensus 569 ~d~~iG~~~i~L~~--l~~~~~~~~w~~L~--~~~~G~i~~~l~ 608 (713)
+..-||.+.+.++. +...-+..+||.+. |...+.|.++|.
T Consensus 128 kk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 128 KKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred ceeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEeh
Confidence 56789999998763 34556788999995 444577777764
No 304
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=30.96 E-value=4.6e+02 Score=24.95 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=52.5
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEE----------CCe-EEeccCC-C-----CCCCccceEEEEEEeCC----Cce
Q 005132 368 INVTVVEGKDLMPKDKSGKCDPYVKLQY----------GKI-VQRTRTA-H-----SPNHVWNQKFELDEIGG----GEC 426 (713)
Q Consensus 368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l----------~~~-~~kT~~~-~-----t~nP~wne~f~f~v~~~----~~~ 426 (713)
+.-.|..|.+... .+-||+-.+ +.. ...|.+. . +..-.||..|++..... ...
T Consensus 4 v~G~I~~a~~f~~------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFEE------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCCC------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 4556788886642 467888776 123 4556555 2 34568999998886543 479
Q ss_pred EEEEEEEecCC-CCceeEEEEEec
Q 005132 427 LMVKCYNEEIF-GDENMGSARVNL 449 (713)
Q Consensus 427 l~i~V~d~~~~-~d~~lG~~~i~l 449 (713)
|.|+||..|.. ++.+.|...+.+
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEe
Confidence 99999999988 777777666655
No 305
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=28.80 E-value=5.2e+02 Score=24.62 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=48.4
Q ss_pred EEEEccCccccccCCCCCcEEEEEE--C--------Ce-EEEEEeeeC-----CCCCeeeeEEEEec-----C-CCeEEE
Q 005132 502 VIVEARDLVAADLRGTSDPYVKVQY--G--------DL-KKRTKVIFK-----TLNPQWHQTLEFPD-----D-GSPLTL 559 (713)
Q Consensus 502 ~v~~a~~L~~~d~~g~~DPyv~v~~--~--------~~-~~kT~v~~~-----t~nP~wne~~~f~v-----~-~~~l~i 559 (713)
.|..|.+.. ..+-||+-.+ + .. ...|.+.+. .-.-.||--|.+.. . -+.|.+
T Consensus 7 ~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 455565442 3466888766 1 23 455665543 23456887666553 1 378999
Q ss_pred EEEECCCCCCCCeeEEEEEEce
Q 005132 560 HVRDHNALLASSSIGDCVVEYQ 581 (713)
Q Consensus 560 ~V~D~d~~~~d~~iG~~~i~L~ 581 (713)
+||..|.++++...|...+.|-
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEeC
Confidence 9999999999999987776653
No 306
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=28.43 E-value=1.8e+02 Score=27.23 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=48.2
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEE----C---CeEEeccCC--C-CCCCccceEEEEEEeC----CCceEEEEEE
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY----G---KIVQRTRTA--H-SPNHVWNQKFELDEIG----GGECLMVKCY 432 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l----~---~~~~kT~~~--~-t~nP~wne~f~f~v~~----~~~~l~i~V~ 432 (713)
.|.|.|.+.. | +|.....|||+.|++ | ...+.|.+. . ..-=.||.+.+....- +...|.|++.
T Consensus 14 ~l~v~Iekig-l--kda~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~k 90 (147)
T PF14186_consen 14 YLSVFIEKIG-L--KDASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFK 90 (147)
T ss_dssp EEEEEEEEEE----TTGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEE
T ss_pred eEEEEEEEEE-E--CChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEE
Confidence 6888888876 6 455567899999999 2 126667766 2 2223345444443221 3678999999
Q ss_pred EecCC--CCceeEEEEEeccccccC
Q 005132 433 NEEIF--GDENMGSARVNLEGLVEG 455 (713)
Q Consensus 433 d~~~~--~d~~lG~~~i~l~~l~~~ 455 (713)
++... +-...|.+.+.++++..+
T Consensus 91 H~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 91 HYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEETTTTCEEEEEEEEEEGGG--SE
T ss_pred eeeccceeeeeeEEEEEEhhhccCC
Confidence 98765 334567777777776543
No 307
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=27.96 E-value=52 Score=39.20 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=54.4
Q ss_pred ccccccccccccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCc------EEEEeecCC
Q 005132 162 PAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTDARP 235 (713)
Q Consensus 162 ~~~~l~~~~~~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~------~~~tt~i~~ 235 (713)
+..+......-|.+.+.+++|..|+... .-||+..+.+ -..+..+.+
T Consensus 748 NddD~eSpl~ygflh~~vhsat~lkqs~---------------------------~lY~Td~v~e~~~~~s~~st~~iad 800 (1112)
T KOG4269|consen 748 NDDDDESPLLYGFLHVIVHSATGLKQSR---------------------------NLYCTDEVDEFGYFVSKASTRVIAD 800 (1112)
T ss_pred ccccccCcccccceeeeecccccccccc---------------------------ceeeehhhhhhccccccccceeeec
Confidence 3333433334499999999999997542 3488888732 346777899
Q ss_pred CCCCcccceEEEEEecCCceEEEEEEEeCC
Q 005132 236 GSDPRWDSMFNMVLHEETGTVRFNLYECIP 265 (713)
Q Consensus 236 ~~nP~WnEtf~~~v~~~~~~L~~~v~d~d~ 265 (713)
+..|.||+.|.+.+.. .|.+++..|+.+.
T Consensus 801 T~~~~~npe~hv~~~~-sqS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 801 TAEPQWNPEKHVPVIE-SQSSRLEKTEKST 829 (1112)
T ss_pred ccCCCCChhcccchhh-ccccchhhhcccc
Confidence 9999999999887744 4666777877663
No 308
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=26.08 E-value=11 Score=42.66 Aligned_cols=149 Identities=14% Similarity=0.129 Sum_probs=81.8
Q ss_pred cEEEEEEEEeEcCCCC--C--CCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC--CCceEEEEEEEecCCC
Q 005132 366 RKINVTVVEGKDLMPK--D--KSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVKCYNEEIFG 438 (713)
Q Consensus 366 g~L~V~I~~a~~L~~~--~--~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~--~~~~l~i~V~d~~~~~ 438 (713)
|+...+++.|.++... + ..-..++++...++++.++|+.. .+.+|+|||. +|...+ ....+ .
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l----------~ 348 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYL----------G 348 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHH----------h
Confidence 4555666667666321 1 12346889999999999999999 9999999998 555332 12233 3
Q ss_pred CceeEEEEEeccccccC----CeeeeeeeceecccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccc-
Q 005132 439 DENMGSARVNLEGLVEG----SVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD- 513 (713)
Q Consensus 439 d~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d- 513 (713)
..++|.+..++.+-... ......+..+. . ...+.+.+..-...++++..
T Consensus 349 ~kiv~~~~~~lndS~A~f~vq~~~sn~~~~~p-E-------------------------~~~~sfnl~~~a~sn~~a~r~ 402 (975)
T KOG2419|consen 349 NKIVGYCELDLNDSYANFVVQRAKSNFFISEP-E-------------------------STCKSFNLLDPASSNLPALRN 402 (975)
T ss_pred hhccccccccccchhhhhhhhhhhccccccCc-c-------------------------ccceEEEeecCCcccchhhhh
Confidence 44556666666552111 00111111110 0 11122222222233333221
Q ss_pred ----cCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEe
Q 005132 514 ----LRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP 551 (713)
Q Consensus 514 ----~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~ 551 (713)
.+-..||+..+.+|..-.++.+-....+|.+++.-.+.
T Consensus 403 ~~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s 444 (975)
T KOG2419|consen 403 RLSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILS 444 (975)
T ss_pred ccCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhccc
Confidence 23356999999988877766666666777776644443
No 309
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=25.29 E-value=2.3e+02 Score=26.35 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=49.2
Q ss_pred CcEEEEEe-CcEEEEeecCCCCCCcccceEEEE-----Eec-------C-CceEEEEEEEeCCCCCccceeEEEEEEccc
Q 005132 217 TTFVEIEL-EELTRRTDARPGSDPRWDSMFNMV-----LHE-------E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKY 282 (713)
Q Consensus 217 dpyv~v~~-g~~~~tt~i~~~~nP~WnEtf~~~-----v~~-------~-~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~ 282 (713)
|-|..|++ |...+|.-....-==.++|.|.|. +.+ + .+.+.++++.+... ....|+..+-+.++
T Consensus 21 ~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~--~g~iLA~ye~n~rD 98 (140)
T PF14909_consen 21 DVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPP--AGEILAYYEENTRD 98 (140)
T ss_pred CEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCC--CCcEEEEEeccccc
Confidence 67999988 777777655444333568999887 112 1 67999999998864 47799999988888
Q ss_pred ccC
Q 005132 283 VAD 285 (713)
Q Consensus 283 l~~ 285 (713)
+.-
T Consensus 99 fLf 101 (140)
T PF14909_consen 99 FLF 101 (140)
T ss_pred eEc
Confidence 774
No 310
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=24.82 E-value=4e+02 Score=24.04 Aligned_cols=87 Identities=8% Similarity=0.077 Sum_probs=49.1
Q ss_pred ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEE-EEeeeCCCCCeee-eEEEEecC-----CCeEEEEEEECCC-CC
Q 005132 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR-TKVIFKTLNPQWH-QTLEFPDD-----GSPLTLHVRDHNA-LL 568 (713)
Q Consensus 497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~k-T~v~~~t~nP~wn-e~~~f~v~-----~~~l~i~V~D~d~-~~ 568 (713)
..|.++-+.-++.|..+..+.+.||++|+-++.... |....... .... ..+.+... ...+.|.+++.+. ..
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~ 82 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDP-KSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSM 82 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCC-CEEETTCEEEEEEEEEEEESEEEEEEEECETTEC
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceecc-ccccceeEEEEeCCCCeEeCCEEEEEEeCCCccc
Confidence 345555555566776666778899999999887653 22222111 1111 12222221 4678888988763 34
Q ss_pred CCCeeEEEEEEceecC
Q 005132 569 ASSSIGDCVVEYQRLP 584 (713)
Q Consensus 569 ~d~~iG~~~i~L~~l~ 584 (713)
.++.+.++.+.-.-+.
T Consensus 83 ~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 83 SKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCEEEEEEEEEGGGSB
T ss_pred ccCeEEEEEEeeeeee
Confidence 4566777777654443
No 311
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=23.52 E-value=94 Score=34.27 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=28.7
Q ss_pred eeEEEEEEcee-cCCCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132 572 SIGDCVVEYQR-LPPNQMADKWIPLQGV-----RKGEIHVLITR 609 (713)
Q Consensus 572 ~iG~~~i~L~~-l~~~~~~~~w~~L~~~-----~~G~i~~~l~~ 609 (713)
.+|.+.|++.. +..+...+.||++.+. ..|.+ +++.|
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~ 43 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSS 43 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEe
Confidence 48999999999 6777788999999642 34666 67766
No 312
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=23.25 E-value=15 Score=41.80 Aligned_cols=65 Identities=17% Similarity=0.117 Sum_probs=44.1
Q ss_pred EEEEEccCcccc--c--cCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC----CCeEEEEEEECCC
Q 005132 501 LVIVEARDLVAA--D--LRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLHVRDHNA 566 (713)
Q Consensus 501 v~v~~a~~L~~~--d--~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i~V~D~d~ 566 (713)
..++.|.+++.. + ..-..+|++...++.+.++|+....+.+|+|||. .|++. +..|...|.+++.
T Consensus 284 l~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~ 356 (975)
T KOG2419|consen 284 LTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCE 356 (975)
T ss_pred HHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccccc
Confidence 445555555321 1 2235689999999999999999999999999997 56552 3344444444444
No 313
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.09 E-value=3.5e+02 Score=25.59 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=24.0
Q ss_pred CeEEEEEEECCCCCCCCeeEEEEEEce
Q 005132 555 SPLTLHVRDHNALLASSSIGDCVVEYQ 581 (713)
Q Consensus 555 ~~l~i~V~D~d~~~~d~~iG~~~i~L~ 581 (713)
+.|.+.||..|.+++|-+.|...+++-
T Consensus 83 Pqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 83 PQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred ceEEEEEecCCcCCcceeeeeeeEecC
Confidence 679999999999999999998888754
No 314
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=20.09 E-value=6.4e+02 Score=22.63 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=51.5
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEE-eccCC-CCCCCccceEEEEEEeC--C-CceEEEEEEEecC--CCC
Q 005132 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQ-RTRTA-HSPNHVWNQKFELDEIG--G-GECLMVKCYNEEI--FGD 439 (713)
Q Consensus 367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~-kT~~~-~t~nP~wne~f~f~v~~--~-~~~l~i~V~d~~~--~~d 439 (713)
.|.++-+.-...|.-+..+.+.||++|+-++... .|... ....-.=...+.+.+.. . ..-+.|++|+.+. ..+
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 4556656666777666667889999999977654 44444 22111112223333222 2 5678889988773 266
Q ss_pred ceeEEEEEeccccc
Q 005132 440 ENMGSARVNLEGLV 453 (713)
Q Consensus 440 ~~lG~~~i~l~~l~ 453 (713)
..+.++.+.-.-+.
T Consensus 85 ~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 85 EKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEEEGGGSB
T ss_pred CeEEEEEEeeeeee
Confidence 67777777766554
Done!