BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005133
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%)
Query: 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594
++W +GN Y Q D++ A++ +Q+A++L+PR A G+ Y D++ I YQ A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 595 LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGE 654
L +D R +WY LG Y +Q ++ + +++ A ++ P S+ LG A + E
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 655 AIEMMEKAILAD 666
AIE +KA+ D
Sbjct: 122 AIEYYQKALELD 133
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 63/112 (56%)
Query: 524 QELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALED 583
Q+ + D + ++W +GN Y Q D++ A++ +Q+A++L+PR A G+ Y D
Sbjct: 25 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84
Query: 584 FENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635
++ I YQ AL +D R +WY LG Y +Q ++ + +++ A ++ P S
Sbjct: 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%)
Query: 574 CGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP 633
G+ Y D++ I YQ AL +D R +WY LG Y +Q ++ + +++ A ++ P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 634 HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVL 693
S+ LG A + EAIE +KA+ D ++ Y N +DEA+E
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 694 EELKEYAPR 702
++ E PR
Sbjct: 127 QKALELDPR 135
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%)
Query: 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663
+WY LG Y +Q ++ + +++ A ++ P S+ LG A + EAIE +KA+
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 664 LADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711
D ++ Y N +DEA+E ++ E PR + + +G
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 62/113 (54%)
Query: 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594
++W +GN Y Q D++ A++ +Q+A++L+P A G+ Y D++ I YQ A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 595 LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647
L +D + +WY LG Y +Q ++ + +++ A ++ P+++ LG A
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634
G+ Y D++ I YQ AL +D + +WY LG Y +Q ++ + +++ A ++ P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669
++ LG A + EAIE +KA+ D N
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%)
Query: 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663
+WY LG Y +Q ++ + +++ A ++ P+++ LG A + EAIE +KA+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 664 LADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702
D N Y N +DEA+E ++ E P
Sbjct: 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 524 QELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALED 583
Q+ + D ++W +GN Y Q D++ A++ +Q+A++L+P A G+ Y D
Sbjct: 33 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD 92
Query: 584 FENGIRSYQSALRVD 598
++ I YQ AL +D
Sbjct: 93 YDEAIEYYQKALELD 107
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 631 ISPHSSVIMSY-LGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEA 689
+ P +S Y LG A + EAIE +KA+ D N Y N +DEA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 690 LEVLEELKEYAPRESGVYALMG 711
+E ++ E P + + +G
Sbjct: 63 IEYYQKALELDPNNAEAWYNLG 84
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%)
Query: 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594
++W +GN Y Q D++ A++ +Q+A++L+P A G+ Y D++ I YQ A
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKA 69
Query: 595 LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647
L +D + +WY G Y +Q ++ + ++ A ++ P+++ LG A
Sbjct: 70 LELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQ 122
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%)
Query: 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634
G+ Y D++ I YQ AL +D + ++WY LG Y +Q ++ + +++ A ++ P+
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669
++ G A + +AIE +KA+ D N
Sbjct: 76 NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 524 QELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALED 583
Q+ + D +W +GN Y Q D++ A++ +Q+A++L+P A G+ Y D
Sbjct: 33 QKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGD 92
Query: 584 FENGIRSYQSALRVD 598
++ I YQ AL +D
Sbjct: 93 YQKAIEDYQKALELD 107
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663
+W LG Y +Q ++ + +++ A ++ P+++ LG A + +AIE +KA+
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 664 LADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701
D N Y++ N + +A+E ++ E P
Sbjct: 71 ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%)
Query: 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLA 523
N+ +G AY++ DY +A + A P + Y + K
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 524 QELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA 568
Q+ + D ++W GN Y Q D++ A++++Q+A++L+P A
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNA 111
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 60/111 (54%)
Query: 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594
++W +GN Y Q D++ A++ +Q+A++L P A G+ Y D++ I YQ A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 595 LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA 645
L + + +WY LG Y +Q ++ + +++ A ++ P+++ LG A
Sbjct: 70 LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNA 120
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634
G+ Y D++ I YQ AL + + +WY LG Y +Q ++ + +++ A ++ P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAI 663
++ LG A + EAIE +KA+
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663
+WY LG Y +Q ++ + +++ A ++ P+++ LG A + EAIE +KA+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 664 LADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702
N Y N +DEA+E ++ E P
Sbjct: 71 ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 631 ISPHSSVIMSY-LGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEA 689
+ P +S Y LG A + EAIE +KA+ N Y N +DEA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 690 LEVLEELKEYAPRESGVYALMG 711
+E ++ E P + + +G
Sbjct: 63 IEYYQKALELYPNNAEAWYNLG 84
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 14/257 (5%)
Query: 456 LKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515
++L H+ Y G D+ AER R P + + + S++ + +
Sbjct: 3 MELAHREYQAG--------------DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR 48
Query: 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575
+ ++ + I + L +++ +GN Y + + A+++++ A++L P F G+
Sbjct: 49 LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108
Query: 576 HEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635
VA D E +++Y SAL+ + Y LG + + E ++ + A + P+
Sbjct: 109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168
Query: 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEE 695
+V S LG +A AI EKA+ D N+L FD A+
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 696 LKEYAPRESGVYALMGC 712
+P + V+ + C
Sbjct: 229 ALSLSPNHAVVHGNLAC 245
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 9/189 (4%)
Query: 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLC 574
E+ K YL + I T +W +G ++ Q + A+ +F++AV L+P F +
Sbjct: 152 EEAKACYL--KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209
Query: 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634
G+ F+ + +Y AL + H L VY Q + + +R A ++ PH
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAIL-----ADKKNPLPMYQK--ANILLSLEKFD 687
L A+ EA + A+ AD N L ++ NI ++ +
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329
Query: 688 EALEVLEEL 696
+ALEV E
Sbjct: 330 KALEVFPEF 338
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 6/197 (3%)
Query: 470 SQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITT 529
S +G Y E EA + A R P ++G Y + L + Q ++
Sbjct: 71 SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG---YINLAAALVAAGDMEGAVQAYVSA 127
Query: 530 DRLAPQSWCA---MGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFEN 586
+ P +C +GN E A + +A++ P FA + G + A +
Sbjct: 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187
Query: 587 GIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAM 646
I ++ A+ +D +++ LG V F+ + + A +SP+ +V+ L
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247
Query: 647 HALKRSGEAIEMMEKAI 663
+ AI+ +AI
Sbjct: 248 YEQGLIDLAIDTYRRAI 264
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%)
Query: 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQS 593
P ++C + N + A + A++L P A + + E +R Y+
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330
Query: 594 ALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650
AL V + L V +Q K + + H++ A +ISP + S +G + ++
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594
++W +GN Y Q D++ A++ +Q+A++L+PR A G+ Y D++ I YQ A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 595 LRVDAR 600
L +D R
Sbjct: 64 LELDPR 69
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634
G+ Y D++ I YQ AL +D R +WY LG Y +Q ++ + +++ A ++ P
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 69
Query: 635 S 635
S
Sbjct: 70 S 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663
+WY LG Y +Q ++ + +++ A ++ P S+ LG A + EAIE +KA+
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 664 LADKK 668
D +
Sbjct: 65 ELDPR 69
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 524 QELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR 566
Q+ + D + ++W +GN Y Q D++ A++ +Q+A++L+PR
Sbjct: 27 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 69
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 642 LGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701
LG A + EAIE +KA+ D ++ Y N +DEA+E ++ E P
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Query: 702 R 702
R
Sbjct: 69 R 69
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 28/275 (10%)
Query: 449 KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYST 508
++ LDV + L +HY D+ + ++ P+ + ++
Sbjct: 19 QENLDVVVSLAERHYYN--------------CDFKXCYKLTSVVXEKDPFHASCLPVHIG 64
Query: 509 VLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDH--ETALKNFQRAVQLNPR 566
L L + +L YL+ +L+ P SW A+G CY L H E A + +A L
Sbjct: 65 TLVELNKANELFYLSHKLVDLYPSNPVSWFAVG-CYYLXVGHKNEHARRYLSKATTLEKT 123
Query: 567 FAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFR 626
+ GH + + + +Y +A ++ + +G+ Y + +E F
Sbjct: 124 YGPAWIAYGHSFAVESEHDQAXAAYFTAAQLXKGCHLPXLYIGLEYGLTNNSKLAERFFS 183
Query: 627 MAFQISPHSSVIMSYLG----------TAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676
A I+P + +G TA + E I+ + + DK PL +
Sbjct: 184 QALSIAPEDPFVXHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL-LNNL 242
Query: 677 ANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711
++ L+K+ EAL+ + P+ + Y+ +G
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIG 277
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 18/214 (8%)
Query: 506 YSTVLYHLKEDM-KLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN 564
Y+ + + LK ++ L QE I P S+ + + +++ + K FQ+AV LN
Sbjct: 244 YTGIFHFLKNNLLDAQVLLQESINL-HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 302
Query: 565 PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHH 624
P + + G Y L+D++N +Q A ++ + + L + +Q KF SE
Sbjct: 303 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 362
Query: 625 F---RMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPL---PMYQKAN 678
F ++ F P + + T + + ++ ++ +K + P+ KA
Sbjct: 363 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 422
Query: 679 IL----------LSLEKFDEALEVLEELKEYAPR 702
IL L EKF+ A+++L + E PR
Sbjct: 423 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 456
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 18/214 (8%)
Query: 506 YSTVLYHLKEDM-KLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN 564
Y+ + + LK ++ L QE I P S+ + + +++ + K FQ+AV LN
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINL-HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306
Query: 565 PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHH 624
P + + G Y L+D++N +Q A ++ + + L + +Q KF SE
Sbjct: 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366
Query: 625 F---RMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPL---PMYQKAN 678
F ++ F P + + T + + ++ ++ +K + P+ KA
Sbjct: 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426
Query: 679 IL----------LSLEKFDEALEVLEELKEYAPR 702
IL L EKF+ A+++L + E PR
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594
++W +GN Y Q D++ A++ +Q+A++L+P A G+ Y D++ I YQ A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 595 LRVD 598
L +D
Sbjct: 70 LELD 73
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634
G+ Y D++ I YQ AL +D + +WY LG Y +Q ++ + +++ A ++ P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 635 SSVIMSYLGTAMH 647
++ LG A
Sbjct: 76 NAEAKQNLGNAKQ 88
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663
+WY LG Y +Q ++ + +++ A ++ P+++ LG A + EAIE +KA+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 664 LADKKN 669
D N
Sbjct: 71 ELDPNN 76
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 524 QELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA 568
Q+ + D ++W +GN Y Q D++ A++ +Q+A++L+P A
Sbjct: 33 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 631 ISPHSSVIMSY-LGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEA 689
+ P +S Y LG A + EAIE +KA+ D N Y N +DEA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 690 LEVLEELKEYAPR 702
+E ++ E P
Sbjct: 63 IEYYQKALELDPN 75
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 72/153 (47%)
Query: 549 DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGL 608
D+E A + F +A++ N A + + ++ + E + Y AL +D+ ++YG
Sbjct: 38 DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97
Query: 609 GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668
G VY+ +E ++ ++ F A + + + LGT + L++ A+ +++A+ ++
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 669 NPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701
+ +Q L + DEAL + E P
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 66 SRYLFAVACYQMDLLSEAEAALSPVNEPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYK 125
+R+ F + +L EA + + V E P A Y G+ Y Y + R+ A+
Sbjct: 161 ARFQFGMCLANEGMLDEALSQFAAVTEQD---PGHADAFYNAGVTYAYKENREKALEMLD 217
Query: 126 MALSIDP 132
A+ I P
Sbjct: 218 KAIDIQP 224
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/172 (18%), Positives = 73/172 (42%)
Query: 497 PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKN 556
PY+L+ ++ L+ E KL ++ +L+ +W A+G Y A +
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395
Query: 557 FQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE 616
F ++ ++P+F H + + + I +Y +A R+ + + LGM +++
Sbjct: 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455
Query: 617 KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668
+ + + ++ + + ++++ LG AI + A+L KK
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 547 QKDHETALKNFQRAVQLNPR-------FAYGHTLCGHEYVALEDFENGIRSYQSALRVDA 599
+ D +TA+ +FQ A+ L + +A GH Y L+ ++ I + L +
Sbjct: 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547
Query: 600 RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAM 646
N + +VYL ++ + H + ISP+ + L A+
Sbjct: 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 486 ERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP---QSWCAMGN 542
E A L R+A E +S + L++ KL R++P ++ MGN
Sbjct: 26 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85
Query: 543 CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597
+D + AL+ + RA+Q+NP FA H+ + + I SY++AL++
Sbjct: 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYL 642
+ E +R Y+ AL V + L V +Q K + + H++ A +ISP + S +
Sbjct: 24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83
Query: 643 GTAMHALKRSGEAIEMMEKAI 663
G + ++ A++ +AI
Sbjct: 84 GNTLKEMQDVQGALQCYTRAI 104
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ 630
T EY+ +D+ S + AL+ D ++ +W +Y + + ++ FR A
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 631 ISPHSSVIMSYLGTAMHA-LKRSGEAIEMMEKAILADKKNPLP 672
I P S+ I + G + L R E++ +KA LAD P P
Sbjct: 71 IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA-LADPTYPTP 112
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 543 CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA 599
CY+ + + ALK+ + +QL P F G+T A++D+ + YQ AL +D+
Sbjct: 59 CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 41/96 (42%)
Query: 541 GNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600
N Y KD+E A+K + +A++LNP A + Y+ E + + A+ +D +
Sbjct: 28 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDKK 87
Query: 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS 636
+ +Y + KF + + ++ PH
Sbjct: 88 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 123
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 61 TQMALSRYLFAVACYQMDLLSEAEAALSPVNEPSAEIPNGAAGHYLMGLIYRYTDRRKNA 120
T A + Y+ A + +D E +AA+ + A A +Y +GL+Y A
Sbjct: 70 TTSAEAYYILGSANFMID---EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKA 126
Query: 121 IHHYKMALSIDPLLWAAYEELCMLGAAEEATAVFSEA 157
I Y+ +SI P AY+ +G A E + EA
Sbjct: 127 IEAYEKTISIKPGFIRAYQS---IGLAYEGKGLRDEA 160
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 50/119 (42%)
Query: 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYL 642
DF+ IR+Y+ L+ D + + LG Y+ + + + S+ L
Sbjct: 20 DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL 79
Query: 643 GTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701
G+A + AI+ +++AI + Y+ + S+ + D+A+E E+ P
Sbjct: 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Query: 451 ALDVYLKLPHKHYNTGWVLSQVGKAYFEV---VDYLEAERAFTLARRASPYSLEGMDIYS 507
A+ Y K+ N L ++GK Y ++ D +E+ + F + S E I
Sbjct: 24 AIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA---EAYYILG 80
Query: 508 TVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF 567
+ + + E Q I + + ++ +G Y +H+ A++ +++ + + P F
Sbjct: 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140
Query: 568 AYGHTLCGHEY 578
+ G Y
Sbjct: 141 IRAYQSIGLAY 151
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 553 ALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612
A+++ ++ V L+ A + + G +++ + I + Q A+ ++ + +++Y LG+VY
Sbjct: 58 AIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVY 117
Query: 613 LRQEKFEFSEHHFRMAFQISP-----HSSVIMSYLGTAM 646
+ + + + I P + S+ ++Y G +
Sbjct: 118 DSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 41/96 (42%)
Query: 541 GNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600
N Y KD+E A+K + +A++LNP A + Y+ E + + A+ +D +
Sbjct: 20 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79
Query: 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS 636
+ +Y + KF + + ++ PH
Sbjct: 80 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 576 HEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635
H++ + ++ E +++ Q +R + ++ W LG YL Q + S +R A Q+ +
Sbjct: 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77
Query: 636 SVIMSYLGTAMH---ALKRSGEAIEMMEKAILAD 666
+ + + L T ++ + + + M++KA+ D
Sbjct: 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALD 111
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 41/95 (43%)
Query: 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH 601
N Y KD+E A+K + +A++LNP A + Y+ E + + A+ +D ++
Sbjct: 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73
Query: 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS 636
+Y + KF + + ++ PH
Sbjct: 74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEA 655
R +AR +++ LG+ YL++ E ++ R A +I P S+ + L A
Sbjct: 33 RDEAR--DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLA 90
Query: 656 IEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA--PRESGVYALMGC 712
E KA+ +D +N + L ++++EA + L E + P S V+ +G
Sbjct: 91 DEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 553 ALKNFQRAVQLNPRFAYGHTLCGHEYVAL----EDFENGIRSYQSALRV--DARHYNSWY 606
AL+N + V PR+ G+ + YVAL ED E G + AL V DA N Y
Sbjct: 58 ALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117
Query: 607 G-----LGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEK 661
G+VY + + +E + A + + I S L ++ R EA+ K
Sbjct: 118 APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAK 176
Query: 662 AI 663
A+
Sbjct: 177 AL 178
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 642 LGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701
LG ++AL R A+ + E+A+ + ++P +Y A L L + ALE + L P
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 702 RESGVYALM 710
R G Y ++
Sbjct: 71 RYLGGYMVL 79
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 524 QELITTDRLAP-QSWCAMGNCYSLQKDHETALKNFQRAVQLNP 565
+E + T+ + +++ MGN Y D + AL N+Q A++LNP
Sbjct: 24 EEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEA 655
R +AR +++ LG+ YL++ E ++ R A +I P S+ + L A
Sbjct: 46 RDEAR--DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLA 103
Query: 656 IEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA--PRESGVYALMGC 712
E KA+ +D +N + L ++++EA + L E + P S V+ +G
Sbjct: 104 DEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 162
>pdb|3ZN3|A Chain A, N-terminal Domain Of S. Pombe Cdc23 Apc Subunit
Length = 291
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 105 YLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCM-LGAAEEATAVFSE 156
YL G++YR + AI K + P W+A+ EL + + + E T V S+
Sbjct: 160 YLSGVVYRKRKQDSKAIDFLKSCVLKAPFFWSAWLELSLSIDSLETLTTVVSQ 212
>pdb|3IYU|X Chain X, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Y Chain Y, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Z Chain Z, Atomic Model Of An Infectious Rotavirus Particle
Length = 776
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 21/113 (18%)
Query: 108 GLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCMLGAAEEATAVFSEAAALCIQKQYL 167
G IY Y N Y + D + A+ + ++ EE+T +Y+
Sbjct: 172 GKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCT-----------EYI 220
Query: 168 QNGLA----TQNLY-LPNEDRNLVSSKSAGTEDISPRQ---LKHMQANNLRDI 212
NGL T+N+ L RN++S ++ EDI + K MQ N RDI
Sbjct: 221 NNGLPPIQNTRNIVPLALSARNIISHRAQANEDIVVSKTSLWKEMQYN--RDI 271
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 47/120 (39%)
Query: 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575
++K +LA + + P C +G ++L +++ A+ F A+ + P G
Sbjct: 136 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 195
Query: 576 HEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635
E + +Y+ AL + + S Y LG+ + + HF A + S
Sbjct: 196 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 255
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 47/120 (39%)
Query: 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575
++K +LA + + P C +G ++L +++ A+ F A+ + P G
Sbjct: 159 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 218
Query: 576 HEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635
E + +Y+ AL + + S Y LG+ + + HF A + S
Sbjct: 219 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 278
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 47/120 (39%)
Query: 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575
++K +LA + + P C +G ++L +++ A+ F A+ + P G
Sbjct: 159 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 218
Query: 576 HEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635
E + +Y+ AL + + S Y LG+ + + HF A + S
Sbjct: 219 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 278
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634
G+E + +E+FE + Y A+ ++ + + Y + + + A I P
Sbjct: 19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78
Query: 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEA 689
S +G A+ +L + EA+ +KA+ D N K+N+ ++ K EA
Sbjct: 79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET---YKSNLKIAELKLREA 130
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 47/120 (39%)
Query: 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575
++K +LA + + P C +G ++L +++ A+ F A+ + P G
Sbjct: 150 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 209
Query: 576 HEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635
E + +Y+ AL + + S Y LG+ + + HF A + S
Sbjct: 210 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 269
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 522 LAQELITTDR-LAPQSWCAMGNCYSLQKDHETA----LKNFQRAVQLNPRFAYGHTL--C 574
LA++L DR + QS ++GN Y+L +D+E A LK+ A +LN R G
Sbjct: 256 LARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL 313
Query: 575 GHEYVALEDFENGIRSYQSALRV 597
G+ Y AL + + + + L +
Sbjct: 314 GNAYTALGNHDQAMHFAEKHLEI 336
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647
+ LG Y E+F+ + H R A P SV +LG +
Sbjct: 23 FTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64
>pdb|1WDJ|A Chain A, Crystal Structure Of Tt1808 From Thermus Thermophilus Hb8
pdb|1WDJ|B Chain B, Crystal Structure Of Tt1808 From Thermus Thermophilus Hb8
pdb|1WDJ|C Chain C, Crystal Structure Of Tt1808 From Thermus Thermophilus Hb8
Length = 187
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 555 KNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614
+ +R +LNP + + + G +V+ E+G RS Q A ++ AR +N GLG+V+
Sbjct: 14 EELRRLSELNPGYQWERSPEGRLWVSPTGGESGRRSLQLAYQL-AR-WNEERGLGVVFDS 71
Query: 615 QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSG 653
F+F + +SP ++ + A+ +R G
Sbjct: 72 STGFKFPDGSI-----LSPDAAFVERGAWEALSEAEREG 105
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 38/84 (45%)
Query: 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597
++G Y+L ++++A N +RAV+L P A G + + +Y AL +
Sbjct: 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235
Query: 598 DARHYNSWYGLGMVYLRQEKFEFS 621
+ + Y + + Y +++ +
Sbjct: 236 NPGYVRVMYNMAVSYSNMSQYDLA 259
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 38/84 (45%)
Query: 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597
++G Y+L ++++A N +RAV+L P A G + + +Y AL +
Sbjct: 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235
Query: 598 DARHYNSWYGLGMVYLRQEKFEFS 621
+ + Y + + Y +++ +
Sbjct: 236 NPGYVRVMYNMAVSYSNMSQYDLA 259
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 552 TALKNFQRA-------VQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD 598
T L FQRA ++L+ +F G+ VA+ ++ R+Y+ AL+VD
Sbjct: 58 TKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 655 AIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYA 708
A++ +A+ D N +Y++A L+++D+AL L++ +E AP + + A
Sbjct: 292 AVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 47/120 (39%)
Query: 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575
++K +LA + + P C +G ++L +++ A+ F A+ + P G
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 258
Query: 576 HEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635
E + +Y+ AL + + S Y LG+ + + HF A + S
Sbjct: 259 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 506 YSTVLYHLKE-DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN 564
++ + Y KE D+ Y+ + +R P++ +G Y L+++ + A++ ++R+V+LN
Sbjct: 37 FAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN 95
Query: 565 P 565
P
Sbjct: 96 P 96
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 499 SLEGMDIYSTVLYHLKE-DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNF 557
S++G ++ + Y KE D+ Y+ + +R P++ +G Y L+++ + A++ +
Sbjct: 31 SMKGF-YFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECY 88
Query: 558 QRAVQLNP 565
+R+V+LNP
Sbjct: 89 RRSVELNP 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,380,676
Number of Sequences: 62578
Number of extensions: 821912
Number of successful extensions: 1924
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1775
Number of HSP's gapped (non-prelim): 152
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)