Query 005133
Match_columns 713
No_of_seqs 991 out of 1991
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 18:35:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1126 DNA-binding cell divis 100.0 1.9E-46 4.2E-51 402.0 40.0 589 97-712 2-599 (638)
2 KOG1173 Anaphase-promoting com 100.0 1.1E-40 2.4E-45 350.4 34.6 479 4-712 18-531 (611)
3 KOG4626 O-linked N-acetylgluco 100.0 2.5E-38 5.4E-43 333.2 30.2 464 4-711 16-497 (966)
4 KOG4626 O-linked N-acetylgluco 100.0 1.1E-36 2.5E-41 320.7 31.9 274 439-712 191-464 (966)
5 KOG1155 Anaphase-promoting com 100.0 2.7E-33 5.9E-38 288.0 35.0 260 440-699 235-495 (559)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-31 5.1E-36 320.9 50.1 276 435-712 604-879 (899)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-30 6.6E-35 311.2 53.0 474 4-712 24-507 (899)
8 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-30 2.6E-35 302.4 46.0 264 443-706 305-578 (615)
9 PRK11447 cellulose synthase su 100.0 6.6E-30 1.4E-34 314.8 51.8 484 3-711 29-678 (1157)
10 PRK11447 cellulose synthase su 100.0 1.9E-28 4.1E-33 302.0 51.9 270 435-704 354-705 (1157)
11 TIGR00990 3a0801s09 mitochondr 100.0 1E-27 2.2E-32 278.0 41.6 238 434-671 333-577 (615)
12 PRK15174 Vi polysaccharide exp 100.0 3.6E-26 7.7E-31 265.0 42.7 248 441-701 153-405 (656)
13 PRK15174 Vi polysaccharide exp 100.0 2.3E-26 5E-31 266.6 40.6 217 442-670 187-408 (656)
14 PRK09782 bacteriophage N4 rece 100.0 5.9E-26 1.3E-30 268.9 43.6 255 453-711 462-718 (987)
15 KOG1126 DNA-binding cell divis 100.0 1.2E-25 2.6E-30 242.3 35.7 271 435-705 356-626 (638)
16 KOG2002 TPR-containing nuclear 99.9 3.3E-25 7.2E-30 246.3 33.9 276 437-712 457-758 (1018)
17 PRK10049 pgaA outer membrane p 99.9 4.2E-24 9E-29 252.6 43.0 136 4-143 17-158 (765)
18 KOG1174 Anaphase-promoting com 99.9 3.1E-23 6.8E-28 210.9 39.9 257 452-709 218-510 (564)
19 PRK09782 bacteriophage N4 rece 99.9 7.6E-23 1.6E-27 242.6 44.4 266 435-704 480-745 (987)
20 PRK11788 tetratricopeptide rep 99.9 4.2E-23 9.1E-28 226.4 34.5 278 432-710 35-322 (389)
21 KOG0547 Translocase of outer m 99.9 5.7E-23 1.2E-27 213.2 30.6 240 466-705 326-572 (606)
22 KOG0547 Translocase of outer m 99.9 5.9E-23 1.3E-27 213.2 28.2 271 432-702 115-494 (606)
23 KOG2002 TPR-containing nuclear 99.9 1.8E-21 3.9E-26 216.9 40.2 276 435-711 310-605 (1018)
24 PRK11788 tetratricopeptide rep 99.9 4.5E-21 9.7E-26 210.3 37.4 229 469-698 110-346 (389)
25 PRK10049 pgaA outer membrane p 99.9 2E-21 4.4E-26 229.8 36.7 402 35-708 15-465 (765)
26 KOG1155 Anaphase-promoting com 99.9 1.1E-21 2.3E-26 202.8 26.7 270 438-707 268-544 (559)
27 PF13429 TPR_15: Tetratricopep 99.9 1.7E-22 3.7E-27 211.4 14.0 261 437-699 13-277 (280)
28 KOG1173 Anaphase-promoting com 99.9 1.3E-20 2.8E-25 199.5 24.1 250 463-712 241-497 (611)
29 PRK12370 invasion protein regu 99.9 1.7E-19 3.7E-24 206.0 31.2 248 447-697 276-533 (553)
30 PRK14574 hmsH outer membrane p 99.9 5.5E-18 1.2E-22 197.6 44.0 225 483-707 268-521 (822)
31 PRK12370 invasion protein regu 99.9 2.9E-19 6.2E-24 204.1 30.6 232 465-698 257-501 (553)
32 KOG0624 dsRNA-activated protei 99.8 2.7E-19 5.8E-24 178.5 24.8 279 431-709 37-380 (504)
33 KOG1129 TPR repeat-containing 99.8 1.1E-19 2.4E-24 180.2 20.7 248 464-712 221-471 (478)
34 PF13429 TPR_15: Tetratricopep 99.8 3.4E-20 7.4E-25 194.0 13.8 240 470-711 12-255 (280)
35 KOG0548 Molecular co-chaperone 99.8 3.6E-18 7.8E-23 180.7 28.8 246 429-683 221-473 (539)
36 KOG2076 RNA polymerase III tra 99.8 4.1E-18 8.9E-23 189.3 30.4 266 432-697 139-510 (895)
37 KOG1125 TPR repeat-containing 99.8 2.7E-19 5.8E-24 190.6 20.0 256 434-691 287-563 (579)
38 PRK11189 lipoprotein NlpI; Pro 99.8 6E-18 1.3E-22 178.0 27.8 237 445-685 39-286 (296)
39 PRK11189 lipoprotein NlpI; Pro 99.8 5.3E-18 1.1E-22 178.4 27.2 224 480-708 40-275 (296)
40 TIGR02521 type_IV_pilW type IV 99.8 1.2E-17 2.6E-22 167.7 28.4 202 465-700 30-233 (234)
41 KOG1125 TPR repeat-containing 99.8 6.7E-19 1.5E-23 187.6 19.4 233 470-702 289-530 (579)
42 TIGR02521 type_IV_pilW type IV 99.8 1.6E-17 3.5E-22 166.8 28.7 197 432-628 31-229 (234)
43 PLN03081 pentatricopeptide (PP 99.8 1.3E-16 2.9E-21 188.0 40.9 253 443-700 301-558 (697)
44 TIGR00540 hemY_coli hemY prote 99.8 4.1E-17 9E-22 179.7 33.3 266 432-698 84-398 (409)
45 KOG0548 Molecular co-chaperone 99.8 1.1E-17 2.4E-22 177.0 27.1 271 437-708 7-464 (539)
46 PRK10747 putative protoheme IX 99.8 5.3E-17 1.2E-21 178.0 33.8 264 433-700 85-391 (398)
47 KOG1129 TPR repeat-containing 99.8 6.8E-19 1.5E-23 174.7 16.5 255 425-680 216-473 (478)
48 KOG0495 HAT repeat protein [RN 99.8 6E-16 1.3E-20 165.9 39.4 268 441-709 593-890 (913)
49 PLN03081 pentatricopeptide (PP 99.8 2.4E-16 5.2E-21 185.8 40.5 425 5-710 90-534 (697)
50 KOG2003 TPR repeat-containing 99.8 1.2E-17 2.6E-22 171.7 25.1 273 435-707 422-697 (840)
51 TIGR00540 hemY_coli hemY prote 99.8 6.4E-17 1.4E-21 178.2 31.9 226 439-665 160-399 (409)
52 COG3063 PilF Tfp pilus assembl 99.8 3.3E-17 7.2E-22 156.7 25.3 205 504-708 39-245 (250)
53 PRK14574 hmsH outer membrane p 99.8 1.3E-15 2.8E-20 177.9 43.1 200 474-673 300-521 (822)
54 PLN03218 maturation of RBCL 1; 99.8 3.5E-15 7.5E-20 178.8 46.7 255 443-699 518-783 (1060)
55 PLN03077 Protein ECB2; Provisi 99.8 9.3E-16 2E-20 185.0 41.0 248 442-699 434-720 (857)
56 KOG0550 Molecular chaperone (D 99.8 7.3E-18 1.6E-22 172.6 16.6 269 434-702 51-353 (486)
57 KOG2003 TPR repeat-containing 99.8 7.7E-17 1.7E-21 165.7 24.0 241 445-685 469-709 (840)
58 PLN02789 farnesyltranstransfer 99.8 1.6E-16 3.4E-21 167.2 27.2 227 480-706 51-309 (320)
59 KOG4162 Predicted calmodulin-b 99.8 1.1E-15 2.3E-20 167.7 34.1 271 435-705 481-789 (799)
60 COG3063 PilF Tfp pilus assembl 99.8 2.2E-16 4.8E-21 151.1 25.3 208 466-673 35-244 (250)
61 PLN03218 maturation of RBCL 1; 99.8 2.4E-14 5.2E-19 171.7 48.6 223 443-666 553-784 (1060)
62 KOG1174 Anaphase-promoting com 99.8 2E-15 4.3E-20 154.5 31.5 212 435-647 303-516 (564)
63 PLN03077 Protein ECB2; Provisi 99.8 3.8E-15 8.2E-20 179.7 39.9 217 443-666 500-721 (857)
64 COG2956 Predicted N-acetylgluc 99.8 1.8E-15 3.8E-20 150.9 30.1 280 429-710 32-322 (389)
65 KOG0495 HAT repeat protein [RN 99.8 1.5E-15 3.2E-20 163.0 31.2 273 435-708 519-791 (913)
66 KOG1127 TPR repeat-containing 99.7 3.3E-16 7.1E-21 174.7 27.0 137 13-155 410-547 (1238)
67 PLN02789 farnesyltranstransfer 99.7 1.3E-15 2.8E-20 160.3 28.3 232 443-674 48-311 (320)
68 KOG1840 Kinesin light chain [C 99.7 8.5E-16 1.8E-20 168.4 27.9 240 459-698 192-478 (508)
69 KOG2076 RNA polymerase III tra 99.7 1.5E-15 3.3E-20 169.1 29.8 245 467-711 140-490 (895)
70 KOG0624 dsRNA-activated protei 99.7 3.9E-15 8.5E-20 149.0 24.0 242 464-705 36-304 (504)
71 PRK10747 putative protoheme IX 99.7 5.2E-14 1.1E-18 154.5 31.1 236 467-705 85-363 (398)
72 COG2956 Predicted N-acetylgluc 99.7 3.4E-14 7.4E-19 141.8 26.6 234 470-704 39-283 (389)
73 KOG4162 Predicted calmodulin-b 99.6 9E-14 2E-18 152.8 27.5 278 435-712 397-762 (799)
74 KOG1840 Kinesin light chain [C 99.6 2.9E-14 6.3E-19 156.5 23.8 228 438-665 205-479 (508)
75 TIGR03302 OM_YfiO outer membra 99.6 4.5E-14 9.7E-19 143.7 22.5 189 497-702 30-235 (235)
76 cd05804 StaR_like StaR_like; a 99.6 3.2E-13 6.9E-18 146.2 30.2 267 433-700 7-337 (355)
77 TIGR03302 OM_YfiO outer membra 99.6 2.9E-13 6.2E-18 137.7 24.1 190 461-667 28-234 (235)
78 KOG1156 N-terminal acetyltrans 99.6 3E-13 6.5E-18 146.1 24.4 269 434-702 9-286 (700)
79 KOG0550 Molecular chaperone (D 99.6 2.7E-14 5.8E-19 146.7 14.7 243 469-711 52-328 (486)
80 KOG1127 TPR repeat-containing 99.6 2.8E-13 6.1E-18 151.7 23.3 187 445-631 471-659 (1238)
81 KOG2376 Signal recognition par 99.6 1.2E-11 2.7E-16 132.5 34.1 434 3-710 13-498 (652)
82 PRK15359 type III secretion sy 99.6 7.1E-14 1.5E-18 130.6 15.4 124 555-681 14-137 (144)
83 PRK15359 type III secretion sy 99.6 4.9E-14 1.1E-18 131.7 13.9 122 588-712 13-134 (144)
84 KOG1156 N-terminal acetyltrans 99.6 9.4E-13 2E-17 142.3 24.9 243 467-709 8-258 (700)
85 KOG3785 Uncharacterized conser 99.5 1.8E-11 4E-16 123.4 32.0 253 445-702 164-493 (557)
86 cd05804 StaR_like StaR_like; a 99.5 7.7E-13 1.7E-17 143.2 24.2 205 462-667 2-217 (355)
87 PF12569 NARP1: NMDA receptor- 99.5 1.2E-11 2.6E-16 137.6 32.3 265 436-700 8-335 (517)
88 PRK10370 formate-dependent nit 99.5 9.1E-13 2E-17 129.8 21.0 122 581-702 52-176 (198)
89 COG3071 HemY Uncharacterized e 99.5 3.5E-11 7.6E-16 124.1 32.0 264 432-699 84-390 (400)
90 KOG3060 Uncharacterized conser 99.5 6.6E-12 1.4E-16 121.9 23.3 200 443-642 23-231 (289)
91 PRK10370 formate-dependent nit 99.5 2.3E-12 5E-17 127.0 20.4 124 547-670 52-178 (198)
92 PRK14720 transcript cleavage f 99.5 3.7E-12 8E-17 147.3 24.5 228 460-704 25-311 (906)
93 COG5010 TadD Flp pilus assembl 99.5 5E-12 1.1E-16 124.1 20.8 179 482-661 49-227 (257)
94 COG5010 TadD Flp pilus assembl 99.5 4.7E-12 1E-16 124.3 20.6 179 518-697 51-229 (257)
95 KOG1130 Predicted G-alpha GTPa 99.5 3.1E-13 6.8E-18 138.3 12.5 268 432-699 17-344 (639)
96 PRK15179 Vi polysaccharide bio 99.5 6.6E-12 1.4E-16 144.5 24.5 138 529-666 81-218 (694)
97 PF12569 NARP1: NMDA receptor- 99.5 2.7E-10 5.8E-15 126.9 36.2 132 466-597 194-334 (517)
98 KOG1128 Uncharacterized conser 99.5 3.1E-12 6.7E-17 140.1 19.7 223 463-700 395-617 (777)
99 KOG3060 Uncharacterized conser 99.4 1.3E-10 2.7E-15 113.2 27.0 186 495-680 47-235 (289)
100 PF04733 Coatomer_E: Coatomer 99.4 1.6E-12 3.4E-17 135.4 14.2 260 439-706 8-272 (290)
101 TIGR02552 LcrH_SycD type III s 99.4 5.2E-12 1.1E-16 116.6 15.2 116 556-671 5-120 (135)
102 PRK15179 Vi polysaccharide bio 99.4 4.3E-11 9.2E-16 137.9 25.7 160 481-640 67-226 (694)
103 PRK14720 transcript cleavage f 99.4 2E-11 4.2E-16 141.4 22.1 201 494-711 25-264 (906)
104 TIGR02552 LcrH_SycD type III s 99.4 1.4E-11 3E-16 113.8 15.9 116 590-705 5-120 (135)
105 KOG1128 Uncharacterized conser 99.4 4.4E-11 9.6E-16 131.2 20.0 215 437-666 403-617 (777)
106 KOG4340 Uncharacterized conser 99.3 1.9E-10 4E-15 113.9 19.6 188 441-630 19-206 (459)
107 KOG0553 TPR repeat-containing 99.3 1.2E-11 2.7E-16 123.5 11.2 120 568-687 81-200 (304)
108 KOG1130 Predicted G-alpha GTPa 99.3 2.3E-11 4.9E-16 124.9 11.9 244 469-712 20-323 (639)
109 COG4783 Putative Zn-dependent 99.3 9E-10 1.9E-14 116.7 23.7 153 531-700 303-455 (484)
110 KOG0553 TPR repeat-containing 99.3 5.4E-11 1.2E-15 118.9 13.6 132 534-665 81-215 (304)
111 KOG2376 Signal recognition par 99.3 1.5E-09 3.3E-14 116.8 24.7 228 436-671 16-259 (652)
112 PRK04841 transcriptional regul 99.3 9.4E-09 2E-13 125.5 35.6 233 437-669 496-764 (903)
113 COG3071 HemY Uncharacterized e 99.2 1E-08 2.3E-13 106.1 29.3 233 468-703 86-361 (400)
114 PRK15363 pathogenicity island 99.2 1.5E-10 3.3E-15 106.7 13.9 105 562-666 28-133 (157)
115 KOG1915 Cell cycle control pro 99.2 1.5E-08 3.3E-13 106.2 30.2 275 434-709 75-476 (677)
116 KOG3785 Uncharacterized conser 99.2 3.2E-09 6.9E-14 107.4 24.2 250 436-696 61-342 (557)
117 PRK15363 pathogenicity island 99.2 2.6E-10 5.6E-15 105.2 15.0 106 527-632 27-133 (157)
118 PRK04841 transcriptional regul 99.2 7.3E-09 1.6E-13 126.4 30.8 267 438-704 458-765 (903)
119 KOG1915 Cell cycle control pro 99.2 7.1E-07 1.5E-11 94.0 40.2 266 444-711 256-547 (677)
120 COG4783 Putative Zn-dependent 99.2 5.2E-09 1.1E-13 111.0 24.9 154 497-667 303-456 (484)
121 PF04733 Coatomer_E: Coatomer 99.2 5E-10 1.1E-14 116.7 15.6 231 434-672 37-272 (290)
122 KOG4340 Uncharacterized conser 99.2 1.7E-09 3.7E-14 107.2 17.8 218 476-695 20-266 (459)
123 PLN03088 SGT1, suppressor of 99.1 9.5E-10 2.1E-14 118.6 16.3 111 538-648 6-116 (356)
124 COG0457 NrfG FOG: TPR repeat [ 99.1 1.6E-07 3.4E-12 92.3 30.9 221 447-667 38-267 (291)
125 PF12895 Apc3: Anaphase-promot 99.1 4.6E-11 9.9E-16 100.6 4.6 75 14-88 1-82 (84)
126 PLN03088 SGT1, suppressor of 99.1 1.4E-09 3E-14 117.3 16.6 113 571-683 5-117 (356)
127 COG0457 NrfG FOG: TPR repeat [ 99.1 1.8E-07 4E-12 91.8 29.2 224 479-702 36-268 (291)
128 PRK10866 outer membrane biogen 99.1 4.4E-08 9.4E-13 99.7 23.5 164 533-696 31-238 (243)
129 TIGR02795 tol_pal_ybgF tol-pal 99.0 6.8E-09 1.5E-13 93.0 14.6 104 603-706 3-112 (119)
130 PF13525 YfiO: Outer membrane 99.0 4.8E-08 1E-12 96.9 20.9 157 534-690 5-198 (203)
131 PRK10153 DNA-binding transcrip 99.0 3.9E-08 8.4E-13 110.4 22.5 185 424-637 297-488 (517)
132 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.1E-08 2.3E-13 91.7 14.4 102 570-671 4-111 (119)
133 PF13525 YfiO: Outer membrane 99.0 7E-08 1.5E-12 95.7 21.2 175 465-656 4-198 (203)
134 PRK11906 transcriptional regul 99.0 4.7E-08 1E-12 104.5 20.9 133 468-600 257-404 (458)
135 COG4235 Cytochrome c biogenesi 99.0 1.6E-08 3.4E-13 102.2 16.5 118 550-667 138-258 (287)
136 cd00189 TPR Tetratricopeptide 99.0 6.5E-09 1.4E-13 87.4 11.9 97 605-701 3-99 (100)
137 PRK02603 photosystem I assembl 99.0 3E-08 6.4E-13 95.7 17.8 117 533-669 34-153 (172)
138 KOG1941 Acetylcholine receptor 99.0 4.2E-08 9.1E-13 99.8 19.1 267 434-700 8-321 (518)
139 PRK10866 outer membrane biogen 99.0 1.5E-07 3.2E-12 95.8 23.2 182 464-662 30-238 (243)
140 KOG1070 rRNA processing protei 98.9 1.2E-07 2.6E-12 110.6 24.0 211 454-665 1446-1663(1710)
141 KOG3081 Vesicle coat complex C 98.9 4.4E-07 9.6E-12 89.5 24.4 252 443-705 19-277 (299)
142 PRK10153 DNA-binding transcrip 98.9 3.5E-08 7.5E-13 110.8 19.3 144 527-671 330-488 (517)
143 PRK02603 photosystem I assembl 98.9 2.9E-08 6.4E-13 95.8 16.1 119 566-704 33-154 (172)
144 cd00189 TPR Tetratricopeptide 98.9 1.4E-08 3E-13 85.4 12.3 96 537-632 3-98 (100)
145 COG4235 Cytochrome c biogenesi 98.9 2.6E-08 5.7E-13 100.7 16.0 121 584-704 138-261 (287)
146 PF14938 SNAP: Soluble NSF att 98.9 6.9E-08 1.5E-12 101.0 19.9 206 470-704 39-271 (282)
147 PRK11906 transcriptional regul 98.9 6.4E-08 1.4E-12 103.5 19.6 146 516-661 274-432 (458)
148 CHL00033 ycf3 photosystem I as 98.9 2.2E-08 4.7E-13 96.3 14.8 98 550-647 15-117 (168)
149 KOG1070 rRNA processing protei 98.9 5.6E-07 1.2E-11 105.2 27.4 219 481-700 1439-1664(1710)
150 PF09976 TPR_21: Tetratricopep 98.9 8E-08 1.7E-12 89.9 16.4 117 580-697 23-145 (145)
151 PF13414 TPR_11: TPR repeat; P 98.9 9.6E-09 2.1E-13 82.8 8.2 66 636-701 3-69 (69)
152 CHL00033 ycf3 photosystem I as 98.9 4.3E-08 9.3E-13 94.2 13.9 122 582-703 13-153 (168)
153 PF13414 TPR_11: TPR repeat; P 98.8 1.2E-08 2.6E-13 82.2 8.4 63 570-632 5-68 (69)
154 PF09976 TPR_21: Tetratricopep 98.8 1.3E-07 2.9E-12 88.4 16.5 117 546-663 23-145 (145)
155 COG3898 Uncharacterized membra 98.8 4.8E-06 1E-10 86.0 27.7 259 434-698 122-391 (531)
156 KOG4648 Uncharacterized conser 98.8 4.4E-09 9.5E-14 106.1 5.2 233 435-676 100-341 (536)
157 PF12895 Apc3: Anaphase-promot 98.8 1.1E-08 2.3E-13 86.2 6.7 80 615-695 2-83 (84)
158 KOG1941 Acetylcholine receptor 98.8 3.2E-07 6.8E-12 93.6 18.3 231 469-699 9-275 (518)
159 KOG0543 FKBP-type peptidyl-pro 98.8 1.1E-07 2.5E-12 99.3 15.5 148 534-700 208-356 (397)
160 PRK15331 chaperone protein Sic 98.8 6.8E-08 1.5E-12 89.7 11.9 102 563-664 32-133 (165)
161 KOG2047 mRNA splicing factor [ 98.8 2.9E-06 6.3E-11 92.5 25.8 266 436-703 252-583 (835)
162 PRK10803 tol-pal system protei 98.7 2.2E-07 4.7E-12 95.3 15.5 102 569-670 143-251 (263)
163 COG3898 Uncharacterized membra 98.7 1.8E-05 3.9E-10 81.9 28.8 271 433-710 85-368 (531)
164 PRK15331 chaperone protein Sic 98.7 1.4E-07 3.1E-12 87.6 12.5 110 526-636 29-138 (165)
165 KOG0543 FKBP-type peptidyl-pro 98.7 2.4E-07 5.2E-12 96.9 15.4 148 501-667 209-357 (397)
166 PF13432 TPR_16: Tetratricopep 98.7 3.5E-08 7.5E-13 78.5 7.1 62 642-703 3-64 (65)
167 PF14938 SNAP: Soluble NSF att 98.7 2.2E-07 4.7E-12 97.2 15.1 166 537-703 38-229 (282)
168 COG4785 NlpI Lipoprotein NlpI, 98.7 1.4E-06 3E-11 83.3 18.7 195 466-666 65-267 (297)
169 COG4785 NlpI Lipoprotein NlpI, 98.7 5.6E-07 1.2E-11 85.9 16.0 195 501-700 66-267 (297)
170 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.9E-07 8.4E-12 98.1 17.0 112 580-694 181-292 (395)
171 PRK10803 tol-pal system protei 98.7 4.8E-07 1E-11 92.8 16.7 90 615-704 156-251 (263)
172 PF13432 TPR_16: Tetratricopep 98.7 6.1E-08 1.3E-12 77.1 7.8 60 575-634 4-63 (65)
173 KOG3081 Vesicle coat complex C 98.7 2.6E-06 5.6E-11 84.1 20.3 227 473-710 15-247 (299)
174 KOG4648 Uncharacterized conser 98.7 1.3E-08 2.9E-13 102.6 4.6 228 469-705 100-336 (536)
175 KOG2053 Mitochondrial inherita 98.7 1.2E-05 2.7E-10 91.0 27.4 235 434-669 11-259 (932)
176 PF12688 TPR_5: Tetratrico pep 98.6 7.6E-07 1.7E-11 79.6 13.6 94 570-663 3-102 (120)
177 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 9E-07 2E-11 95.4 16.6 122 504-628 173-294 (395)
178 PF12688 TPR_5: Tetratrico pep 98.6 9.5E-07 2.1E-11 79.0 13.4 96 535-630 2-103 (120)
179 KOG2053 Mitochondrial inherita 98.6 4.3E-05 9.3E-10 86.8 27.9 226 477-703 20-259 (932)
180 KOG2047 mRNA splicing factor [ 98.5 8.4E-05 1.8E-09 81.5 28.2 261 439-701 394-689 (835)
181 KOG2471 TPR repeat-containing 98.5 1.4E-05 3.1E-10 84.6 21.8 262 434-696 242-681 (696)
182 KOG3617 WD40 and TPR repeat-co 98.5 2.5E-05 5.3E-10 87.2 24.1 238 444-696 838-1171(1416)
183 COG4105 ComL DNA uptake lipopr 98.5 2.6E-05 5.6E-10 77.6 21.5 171 533-703 33-237 (254)
184 COG4700 Uncharacterized protei 98.5 2.1E-05 4.5E-10 73.7 18.7 122 537-659 92-216 (251)
185 PF13371 TPR_9: Tetratricopept 98.4 7.9E-07 1.7E-11 72.4 7.9 65 644-708 3-67 (73)
186 COG1729 Uncharacterized protei 98.4 3.4E-06 7.3E-11 84.6 13.8 104 571-674 144-253 (262)
187 PF14559 TPR_19: Tetratricopep 98.4 4.8E-07 1E-11 72.5 6.5 52 583-634 6-57 (68)
188 COG4105 ComL DNA uptake lipopr 98.4 8.3E-05 1.8E-09 74.0 23.4 190 464-670 32-238 (254)
189 PF14559 TPR_19: Tetratricopep 98.4 6.6E-07 1.4E-11 71.7 7.2 66 613-678 2-67 (68)
190 KOG4234 TPR repeat-containing 98.4 1.9E-06 4E-11 81.4 10.8 119 571-689 98-221 (271)
191 COG1729 Uncharacterized protei 98.4 3.4E-06 7.3E-11 84.6 13.2 103 435-537 144-252 (262)
192 PF13371 TPR_9: Tetratricopept 98.4 1.2E-06 2.7E-11 71.2 8.5 64 610-673 3-66 (73)
193 KOG4234 TPR repeat-containing 98.4 3.1E-06 6.7E-11 79.9 11.7 111 536-646 97-212 (271)
194 KOG3617 WD40 and TPR repeat-co 98.4 4.4E-05 9.6E-10 85.3 22.0 171 470-663 804-994 (1416)
195 KOG2796 Uncharacterized conser 98.4 0.00042 9.1E-09 68.5 25.8 205 464-668 67-318 (366)
196 COG4700 Uncharacterized protei 98.4 5.1E-05 1.1E-09 71.1 18.5 157 472-630 62-221 (251)
197 PF13512 TPR_18: Tetratricopep 98.3 1.4E-05 3.1E-10 72.7 13.7 104 603-706 11-135 (142)
198 KOG1586 Protein required for f 98.3 0.0001 2.2E-09 71.7 18.8 180 479-673 27-232 (288)
199 PF13512 TPR_18: Tetratricopep 98.2 2.8E-05 6.1E-10 70.8 13.4 120 534-672 10-135 (142)
200 KOG2610 Uncharacterized conser 98.2 8E-05 1.7E-09 75.7 17.6 172 501-672 104-285 (491)
201 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 2.3E-05 5E-10 84.1 14.7 69 529-597 70-141 (453)
202 KOG2471 TPR repeat-containing 98.2 4.7E-05 1E-09 80.9 15.9 276 435-711 20-376 (696)
203 KOG1586 Protein required for f 98.2 0.00025 5.3E-09 69.0 19.3 179 445-638 27-231 (288)
204 PF04184 ST7: ST7 protein; In 98.2 0.00012 2.7E-09 78.6 19.0 215 471-699 173-414 (539)
205 KOG2796 Uncharacterized conser 98.2 0.00047 1E-08 68.1 21.4 135 502-636 179-320 (366)
206 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 1.4E-05 3.1E-10 85.8 11.7 69 563-631 70-141 (453)
207 KOG2610 Uncharacterized conser 98.1 0.00012 2.7E-09 74.4 16.9 204 434-637 68-284 (491)
208 PF05843 Suf: Suppressor of fo 98.1 6.8E-05 1.5E-09 78.2 15.8 133 536-668 3-139 (280)
209 KOG4555 TPR repeat-containing 98.1 9.5E-05 2E-09 65.3 13.4 96 572-667 47-146 (175)
210 PF13424 TPR_12: Tetratricopep 98.1 4.1E-06 8.8E-11 69.2 4.6 27 604-630 7-33 (78)
211 PF06552 TOM20_plant: Plant sp 98.1 4.4E-05 9.6E-10 71.8 11.8 93 550-642 7-120 (186)
212 KOG4555 TPR repeat-containing 98.1 6.9E-05 1.5E-09 66.1 12.0 99 605-703 46-148 (175)
213 PF06552 TOM20_plant: Plant sp 98.0 2.3E-05 4.9E-10 73.7 9.0 89 584-672 7-116 (186)
214 PF13424 TPR_12: Tetratricopep 98.0 6.3E-06 1.4E-10 68.0 4.7 64 568-631 5-75 (78)
215 PF10300 DUF3808: Protein of u 98.0 0.0024 5.2E-08 71.5 26.7 155 546-700 200-377 (468)
216 KOG1585 Protein required for f 98.0 0.0011 2.3E-08 65.1 20.3 129 465-593 30-175 (308)
217 PF05843 Suf: Suppressor of fo 98.0 0.0002 4.4E-09 74.6 16.6 138 467-604 2-143 (280)
218 PF04184 ST7: ST7 protein; In 98.0 0.00038 8.1E-09 75.0 18.3 198 496-706 164-382 (539)
219 PF13281 DUF4071: Domain of un 97.9 0.0022 4.7E-08 68.4 22.5 101 464-564 139-256 (374)
220 PF02259 FAT: FAT domain; Int 97.9 0.0058 1.3E-07 65.8 26.8 258 440-702 6-341 (352)
221 KOG3616 Selective LIM binding 97.8 0.034 7.4E-07 62.2 30.0 241 441-703 741-1028(1636)
222 PF13281 DUF4071: Domain of un 97.8 0.0069 1.5E-07 64.6 24.0 168 500-668 141-337 (374)
223 PF13428 TPR_14: Tetratricopep 97.8 7.2E-05 1.6E-09 54.2 5.7 42 671-712 2-43 (44)
224 KOG4642 Chaperone-dependent E3 97.7 0.00031 6.8E-09 68.6 10.3 92 540-631 16-107 (284)
225 KOG4642 Chaperone-dependent E3 97.6 0.00013 2.8E-09 71.2 7.3 93 573-665 15-107 (284)
226 PF07079 DUF1347: Protein of u 97.6 0.14 3E-06 55.0 29.8 87 608-695 385-520 (549)
227 KOG0530 Protein farnesyltransf 97.6 0.0088 1.9E-07 59.5 19.7 164 485-648 62-233 (318)
228 KOG1550 Extracellular protein 97.6 0.029 6.3E-07 64.4 26.5 248 445-703 262-542 (552)
229 PF07079 DUF1347: Protein of u 97.6 0.17 3.7E-06 54.3 32.1 122 537-661 382-520 (549)
230 KOG4507 Uncharacterized conser 97.6 0.0012 2.7E-08 71.7 14.0 95 614-708 619-714 (886)
231 PF13428 TPR_14: Tetratricopep 97.5 0.00019 4.2E-09 52.0 5.3 26 610-635 9-34 (44)
232 KOG0376 Serine-threonine phosp 97.5 9.4E-05 2E-09 79.3 4.9 110 572-681 8-117 (476)
233 KOG1914 mRNA cleavage and poly 97.5 0.028 6.1E-07 61.2 23.3 152 550-701 347-503 (656)
234 KOG1585 Protein required for f 97.5 0.0071 1.5E-07 59.5 17.1 208 500-708 31-265 (308)
235 KOG0545 Aryl-hydrocarbon recep 97.5 0.0011 2.4E-08 64.9 11.6 102 568-669 178-297 (329)
236 KOG1550 Extracellular protein 97.5 0.018 3.9E-07 66.0 23.4 252 448-712 228-514 (552)
237 KOG1258 mRNA processing protei 97.5 0.12 2.7E-06 57.3 28.1 257 449-705 62-401 (577)
238 PF00515 TPR_1: Tetratricopept 97.4 0.0002 4.4E-09 48.5 4.2 33 101-133 1-33 (34)
239 KOG0530 Protein farnesyltransf 97.4 0.025 5.4E-07 56.3 20.0 204 443-646 54-269 (318)
240 PF08631 SPO22: Meiosis protei 97.4 0.098 2.1E-06 54.5 25.9 53 443-495 4-65 (278)
241 PF02259 FAT: FAT domain; Int 97.4 0.024 5.2E-07 61.0 22.2 236 472-712 4-300 (352)
242 PF13431 TPR_17: Tetratricopep 97.4 0.00017 3.8E-09 48.9 3.2 31 591-621 2-32 (34)
243 KOG0376 Serine-threonine phosp 97.4 0.00027 5.9E-09 75.8 6.1 101 542-642 12-112 (476)
244 KOG2300 Uncharacterized conser 97.3 0.086 1.9E-06 56.8 24.1 242 425-693 275-550 (629)
245 COG0790 FOG: TPR repeat, SEL1 97.3 0.1 2.2E-06 54.7 25.4 113 533-650 108-236 (292)
246 COG0790 FOG: TPR repeat, SEL1 97.3 0.052 1.1E-06 56.9 23.2 162 535-703 74-270 (292)
247 KOG0545 Aryl-hydrocarbon recep 97.3 0.0038 8.3E-08 61.3 12.9 105 534-638 178-300 (329)
248 COG3118 Thioredoxin domain-con 97.3 0.0068 1.5E-07 61.6 15.1 131 434-565 136-267 (304)
249 COG3118 Thioredoxin domain-con 97.3 0.021 4.5E-07 58.2 18.2 147 539-686 139-288 (304)
250 PF07719 TPR_2: Tetratricopept 97.3 0.00046 9.9E-09 46.6 4.5 33 101-133 1-33 (34)
251 PF13431 TPR_17: Tetratricopep 97.3 0.00026 5.6E-09 48.1 3.2 32 659-690 2-33 (34)
252 PF03704 BTAD: Bacterial trans 97.3 0.0074 1.6E-07 56.2 14.1 111 575-698 13-124 (146)
253 KOG0985 Vesicle coat protein c 97.3 0.021 4.6E-07 66.0 19.7 237 439-696 1055-1338(1666)
254 KOG1914 mRNA cleavage and poly 97.3 0.044 9.5E-07 59.8 21.1 186 482-667 309-503 (656)
255 PF10300 DUF3808: Protein of u 97.2 0.014 3.1E-07 65.4 18.4 139 479-618 201-356 (468)
256 COG2909 MalT ATP-dependent tra 97.2 0.22 4.7E-06 57.8 27.5 231 465-695 414-684 (894)
257 COG2909 MalT ATP-dependent tra 97.2 0.17 3.6E-06 58.7 26.1 204 498-701 413-649 (894)
258 PF07719 TPR_2: Tetratricopept 97.2 0.00095 2.1E-08 45.0 5.1 33 671-703 2-34 (34)
259 PF13181 TPR_8: Tetratricopept 97.1 0.00059 1.3E-08 46.1 3.7 33 101-133 1-33 (34)
260 PF00515 TPR_1: Tetratricopept 97.1 0.00093 2E-08 45.2 4.6 32 671-702 2-33 (34)
261 COG2976 Uncharacterized protei 97.1 0.046 1E-06 52.3 17.0 97 605-702 92-191 (207)
262 PF04910 Tcf25: Transcriptiona 97.1 0.024 5.2E-07 61.1 17.2 169 526-702 32-225 (360)
263 PF08631 SPO22: Meiosis protei 97.0 0.38 8.2E-06 50.1 25.6 220 476-697 3-273 (278)
264 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0033 7.1E-08 64.4 9.4 101 568-668 81-185 (390)
265 PF10345 Cohesin_load: Cohesin 97.0 0.37 7.9E-06 56.2 27.9 263 431-694 58-428 (608)
266 KOG0985 Vesicle coat protein c 97.0 0.063 1.4E-06 62.4 20.2 193 472-696 1054-1246(1666)
267 PF03704 BTAD: Bacterial trans 97.0 0.018 3.8E-07 53.6 13.6 60 604-663 64-123 (146)
268 KOG1258 mRNA processing protei 97.0 0.21 4.5E-06 55.6 23.5 204 446-650 269-489 (577)
269 PF04049 APC8: Anaphase promot 97.0 0.002 4.3E-08 59.6 6.9 86 3-88 11-130 (142)
270 KOG3616 Selective LIM binding 97.0 0.034 7.4E-07 62.2 17.3 141 546-697 744-909 (1636)
271 COG2976 Uncharacterized protei 97.0 0.07 1.5E-06 51.1 17.2 92 540-632 95-189 (207)
272 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.1 2.2E-06 55.8 19.5 240 454-703 290-535 (660)
273 KOG2300 Uncharacterized conser 96.9 0.9 1.9E-05 49.4 34.8 162 537-701 326-516 (629)
274 KOG1308 Hsp70-interacting prot 96.9 0.00084 1.8E-08 69.0 3.9 123 540-663 120-242 (377)
275 KOG0551 Hsp90 co-chaperone CNS 96.9 0.037 8.1E-07 56.9 15.3 100 535-634 82-185 (390)
276 PF10345 Cohesin_load: Cohesin 96.8 1.5 3.3E-05 51.1 37.2 231 468-699 303-606 (608)
277 PF08424 NRDE-2: NRDE-2, neces 96.8 0.1 2.2E-06 55.6 18.9 116 551-666 48-184 (321)
278 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.09 2E-06 56.2 17.5 224 436-669 306-535 (660)
279 KOG1308 Hsp70-interacting prot 96.7 0.0014 3E-08 67.5 4.1 122 507-629 121-242 (377)
280 PF08424 NRDE-2: NRDE-2, neces 96.7 0.12 2.5E-06 55.2 18.9 144 557-700 8-184 (321)
281 KOG0890 Protein kinase of the 96.4 0.57 1.2E-05 59.8 24.2 273 438-712 1455-1797(2382)
282 PF04910 Tcf25: Transcriptiona 96.4 0.079 1.7E-06 57.2 15.3 33 461-493 35-67 (360)
283 KOG3783 Uncharacterized conser 96.4 0.085 1.8E-06 57.9 15.0 243 449-702 250-523 (546)
284 PF13181 TPR_8: Tetratricopept 96.4 0.0063 1.4E-07 40.9 4.3 32 671-702 2-33 (34)
285 KOG1464 COP9 signalosome, subu 96.1 0.22 4.8E-06 49.9 15.2 190 443-632 38-261 (440)
286 KOG1464 COP9 signalosome, subu 96.0 0.29 6.3E-06 49.1 15.4 93 505-597 150-260 (440)
287 KOG2041 WD40 repeat protein [G 96.0 0.92 2E-05 51.2 20.4 165 447-626 678-876 (1189)
288 PRK10941 hypothetical protein; 96.0 0.042 9.2E-07 56.5 9.9 70 605-674 184-253 (269)
289 PF13174 TPR_6: Tetratricopept 95.8 0.019 4.2E-07 38.1 4.6 33 467-499 1-33 (33)
290 KOG3783 Uncharacterized conser 95.8 0.34 7.3E-06 53.4 16.2 224 434-668 269-523 (546)
291 PF09613 HrpB1_HrpK: Bacterial 95.8 0.13 2.9E-06 48.0 11.4 85 569-653 11-95 (160)
292 PF13176 TPR_7: Tetratricopept 95.8 0.015 3.2E-07 39.9 3.8 28 103-130 1-28 (36)
293 PF13174 TPR_6: Tetratricopept 95.8 0.017 3.7E-07 38.3 4.1 31 672-702 2-32 (33)
294 KOG2041 WD40 repeat protein [G 95.6 2.2 4.8E-05 48.3 21.7 83 465-559 795-877 (1189)
295 KOG4507 Uncharacterized conser 95.6 0.037 7.9E-07 60.8 7.9 108 540-647 613-721 (886)
296 PRK10941 hypothetical protein; 95.5 0.13 2.8E-06 52.9 11.5 68 639-706 184-251 (269)
297 KOG0890 Protein kinase of the 95.5 2.7 5.8E-05 54.1 24.1 64 635-700 1669-1732(2382)
298 PF09613 HrpB1_HrpK: Bacterial 95.5 0.22 4.7E-06 46.6 11.5 119 535-656 11-129 (160)
299 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.069 1.5E-06 40.2 6.6 41 467-507 2-42 (53)
300 PRK15180 Vi polysaccharide bio 95.4 0.063 1.4E-06 57.6 8.6 127 580-706 301-427 (831)
301 COG4649 Uncharacterized protei 95.4 0.71 1.5E-05 43.5 14.3 142 435-577 61-209 (221)
302 PF04781 DUF627: Protein of un 95.2 0.21 4.6E-06 43.5 9.8 27 542-568 4-30 (111)
303 KOG2396 HAT (Half-A-TPR) repea 95.1 0.32 6.9E-06 53.0 13.0 93 483-575 88-181 (568)
304 PF13176 TPR_7: Tetratricopept 95.1 0.04 8.6E-07 37.8 4.2 25 673-697 2-26 (36)
305 PF14853 Fis1_TPR_C: Fis1 C-te 95.0 0.09 2E-06 39.5 6.2 35 639-673 4-38 (53)
306 PF04190 DUF410: Protein of un 95.0 2.2 4.9E-05 43.8 18.8 102 444-559 2-115 (260)
307 PRK11619 lytic murein transgly 95.0 9.6 0.00021 44.6 29.7 202 496-698 125-374 (644)
308 PF12968 DUF3856: Domain of Un 95.0 0.72 1.6E-05 40.6 12.3 27 673-699 103-129 (144)
309 smart00028 TPR Tetratricopepti 95.0 0.033 7.2E-07 35.7 3.5 32 102-133 2-33 (34)
310 KOG2396 HAT (Half-A-TPR) repea 94.9 0.34 7.4E-06 52.8 12.5 95 449-543 88-183 (568)
311 COG4649 Uncharacterized protei 94.9 2.1 4.6E-05 40.4 15.9 137 544-681 68-211 (221)
312 KOG0529 Protein geranylgeranyl 94.8 0.85 1.8E-05 48.7 15.0 127 583-709 90-234 (421)
313 PF14561 TPR_20: Tetratricopep 94.8 0.3 6.6E-06 41.3 9.7 47 588-634 8-54 (90)
314 KOG3824 Huntingtin interacting 94.8 0.089 1.9E-06 53.5 7.3 76 570-645 118-193 (472)
315 COG3914 Spy Predicted O-linked 94.8 1.1 2.4E-05 49.9 16.2 127 519-645 50-185 (620)
316 PF09986 DUF2225: Uncharacteri 94.7 0.34 7.4E-06 48.2 11.3 29 637-665 166-194 (214)
317 KOG1538 Uncharacterized conser 94.7 0.97 2.1E-05 50.6 15.3 49 440-493 564-612 (1081)
318 PF12968 DUF3856: Domain of Un 94.6 0.42 9.1E-06 42.0 9.9 61 536-596 57-128 (144)
319 KOG3824 Huntingtin interacting 94.5 0.11 2.3E-06 52.9 7.1 77 604-680 118-194 (472)
320 PF14561 TPR_20: Tetratricopep 94.5 0.35 7.5E-06 41.0 9.2 75 621-695 7-83 (90)
321 PF04781 DUF627: Protein of un 94.5 0.35 7.5E-06 42.2 9.2 45 553-597 63-107 (111)
322 PRK15180 Vi polysaccharide bio 94.4 0.45 9.8E-06 51.3 11.8 126 443-568 300-425 (831)
323 TIGR02561 HrpB1_HrpK type III 94.3 0.48 1E-05 43.6 10.2 83 571-653 13-95 (153)
324 COG3914 Spy Predicted O-linked 94.2 1.2 2.5E-05 49.8 14.8 142 545-686 42-192 (620)
325 KOG1463 26S proteasome regulat 94.2 5.7 0.00012 41.5 18.7 266 436-701 8-318 (411)
326 KOG3364 Membrane protein invol 94.1 0.49 1.1E-05 42.6 9.7 76 602-677 32-112 (149)
327 smart00028 TPR Tetratricopepti 94.0 0.09 2E-06 33.5 3.9 31 672-702 3-33 (34)
328 KOG2581 26S proteasome regulat 94.0 8.5 0.00018 41.2 19.9 145 510-654 136-305 (493)
329 PRK13184 pknD serine/threonine 94.0 2.8 6.1E-05 50.6 18.8 99 471-570 480-588 (932)
330 PF09986 DUF2225: Uncharacteri 93.9 0.52 1.1E-05 46.9 10.7 87 548-634 91-197 (214)
331 KOG3364 Membrane protein invol 93.9 0.89 1.9E-05 41.0 10.7 73 568-640 32-109 (149)
332 TIGR02561 HrpB1_HrpK type III 93.8 0.73 1.6E-05 42.4 10.4 80 539-618 15-94 (153)
333 KOG0128 RNA-binding protein SA 93.8 17 0.00037 42.5 23.2 261 445-707 92-384 (881)
334 COG1747 Uncharacterized N-term 93.7 14 0.00029 40.9 22.6 201 462-667 62-290 (711)
335 COG4976 Predicted methyltransf 93.6 0.08 1.7E-06 51.8 4.1 60 611-670 4-63 (287)
336 KOG2422 Uncharacterized conser 93.5 3.8 8.1E-05 45.7 17.0 28 612-639 352-380 (665)
337 KOG1839 Uncharacterized protei 93.5 0.53 1.2E-05 57.0 11.5 163 537-699 935-1128(1236)
338 KOG4814 Uncharacterized conser 93.5 0.65 1.4E-05 51.9 11.2 90 609-698 361-456 (872)
339 PF10602 RPN7: 26S proteasome 93.5 0.85 1.8E-05 44.0 11.1 95 569-663 37-140 (177)
340 COG5159 RPN6 26S proteasome re 93.4 11 0.00023 38.7 18.6 266 436-701 7-316 (421)
341 KOG3807 Predicted membrane pro 93.3 5.9 0.00013 41.2 16.9 195 470-676 188-402 (556)
342 KOG1310 WD40 repeat protein [G 93.2 0.21 4.6E-06 54.4 7.0 105 565-669 371-478 (758)
343 KOG3807 Predicted membrane pro 93.2 6.1 0.00013 41.0 16.9 202 495-708 179-400 (556)
344 KOG2422 Uncharacterized conser 93.1 3.7 8E-05 45.8 16.1 48 480-527 252-311 (665)
345 PRK13184 pknD serine/threonine 92.8 9.3 0.0002 46.3 20.5 130 437-567 480-624 (932)
346 KOG1839 Uncharacterized protei 92.7 0.92 2E-05 55.0 11.9 170 434-630 934-1127(1236)
347 PF10602 RPN7: 26S proteasome 92.7 1.4 3.1E-05 42.4 11.3 98 602-699 36-142 (177)
348 COG5191 Uncharacterized conser 92.3 0.26 5.6E-06 50.4 5.7 82 525-606 98-180 (435)
349 COG1747 Uncharacterized N-term 92.3 22 0.00047 39.5 25.0 238 445-703 27-292 (711)
350 KOG2114 Vacuolar assembly/sort 92.0 12 0.00026 43.7 19.0 242 442-705 344-596 (933)
351 COG4976 Predicted methyltransf 92.0 0.19 4.2E-06 49.3 4.2 62 576-637 3-64 (287)
352 KOG4814 Uncharacterized conser 91.9 1.8 3.8E-05 48.7 11.9 94 469-562 357-456 (872)
353 PF04053 Coatomer_WDAD: Coatom 91.9 4 8.6E-05 45.4 15.0 44 443-488 272-317 (443)
354 PF04053 Coatomer_WDAD: Coatom 91.8 3.7 8.1E-05 45.6 14.7 158 475-662 270-428 (443)
355 KOG0128 RNA-binding protein SA 91.4 31 0.00067 40.5 21.3 239 435-675 116-386 (881)
356 PF04190 DUF410: Protein of un 91.4 19 0.00042 37.0 20.6 140 478-631 2-170 (260)
357 KOG1538 Uncharacterized conser 91.3 4.3 9.2E-05 45.8 14.0 176 437-627 605-798 (1081)
358 KOG1310 WD40 repeat protein [G 91.0 0.57 1.2E-05 51.2 7.0 100 434-533 376-478 (758)
359 COG5191 Uncharacterized conser 91.0 0.52 1.1E-05 48.3 6.2 85 557-641 96-181 (435)
360 PF13374 TPR_10: Tetratricopep 90.9 0.51 1.1E-05 32.8 4.6 28 604-631 4-31 (42)
361 KOG0529 Protein geranylgeranyl 90.8 12 0.00026 40.3 16.4 127 549-675 90-234 (421)
362 PF11817 Foie-gras_1: Foie gra 90.6 5.1 0.00011 40.9 13.5 59 638-696 180-244 (247)
363 KOG2581 26S proteasome regulat 90.1 31 0.00067 37.2 18.8 135 432-566 126-279 (493)
364 PF10579 Rapsyn_N: Rapsyn N-te 89.8 2.1 4.5E-05 34.9 7.5 63 433-495 7-72 (80)
365 PF13374 TPR_10: Tetratricopep 89.8 0.72 1.6E-05 32.0 4.6 30 466-495 2-31 (42)
366 PF09477 Type_III_YscG: Bacter 89.5 3 6.6E-05 36.0 8.7 81 8-88 12-93 (116)
367 COG2912 Uncharacterized conser 89.1 1.5 3.2E-05 44.7 7.8 68 607-674 186-253 (269)
368 PRK12798 chemotaxis protein; R 88.9 39 0.00085 36.8 21.9 194 434-628 114-321 (421)
369 COG4941 Predicted RNA polymera 88.5 31 0.00066 36.3 16.6 186 516-710 212-405 (415)
370 KOG4014 Uncharacterized conser 88.4 24 0.00053 33.8 15.7 52 646-699 178-233 (248)
371 COG2912 Uncharacterized conser 88.3 3 6.5E-05 42.5 9.4 67 640-706 185-251 (269)
372 PF10516 SHNi-TPR: SHNi-TPR; 88.3 0.7 1.5E-05 32.1 3.4 30 102-131 2-31 (38)
373 TIGR02508 type_III_yscG type I 88.2 3 6.4E-05 35.6 7.6 74 14-87 17-91 (115)
374 KOG2063 Vacuolar assembly/sort 87.8 25 0.00055 42.1 17.8 161 469-629 507-711 (877)
375 COG4941 Predicted RNA polymera 87.7 21 0.00046 37.4 15.0 186 483-677 213-406 (415)
376 PF12862 Apc5: Anaphase-promot 87.1 5.2 0.00011 34.0 9.0 25 606-630 45-69 (94)
377 PF12739 TRAPPC-Trs85: ER-Golg 87.0 21 0.00046 39.4 16.2 23 609-631 377-399 (414)
378 PF15015 NYD-SP12_N: Spermatog 86.9 3 6.5E-05 44.7 8.6 89 574-662 182-288 (569)
379 KOG2114 Vacuolar assembly/sort 86.6 9.7 0.00021 44.5 13.0 204 472-696 340-547 (933)
380 COG3629 DnrI DNA-binding trans 86.4 3.1 6.7E-05 42.9 8.3 65 601-665 152-216 (280)
381 PF11207 DUF2989: Protein of u 86.3 6.8 0.00015 38.2 10.1 54 601-655 140-197 (203)
382 COG3629 DnrI DNA-binding trans 86.2 33 0.00072 35.5 15.7 63 569-631 154-216 (280)
383 PF09670 Cas_Cas02710: CRISPR- 85.8 6.9 0.00015 42.7 11.3 62 434-495 133-198 (379)
384 PF12862 Apc5: Anaphase-promot 85.6 3.7 8.1E-05 34.9 7.3 53 648-700 10-71 (94)
385 smart00299 CLH Clathrin heavy 84.5 31 0.00068 31.3 13.8 80 542-627 15-94 (140)
386 PF07720 TPR_3: Tetratricopept 84.3 3.2 6.9E-05 28.5 5.0 31 672-702 3-35 (36)
387 PF10579 Rapsyn_N: Rapsyn N-te 84.2 8.4 0.00018 31.5 8.1 48 612-659 16-66 (80)
388 PF11207 DUF2989: Protein of u 83.9 9.5 0.00021 37.2 9.9 79 543-622 115-198 (203)
389 PF07720 TPR_3: Tetratricopept 83.8 3.6 7.8E-05 28.2 5.1 32 467-498 2-35 (36)
390 PF12739 TRAPPC-Trs85: ER-Golg 83.4 37 0.00079 37.6 15.9 94 602-702 300-402 (414)
391 KOG1463 26S proteasome regulat 82.9 68 0.0015 33.9 16.6 164 504-667 132-318 (411)
392 PF07721 TPR_4: Tetratricopept 82.7 1.8 4E-05 27.0 3.1 23 672-694 3-25 (26)
393 COG3947 Response regulator con 82.5 23 0.00049 36.5 12.2 57 538-594 283-339 (361)
394 PF07721 TPR_4: Tetratricopept 81.9 1.6 3.4E-05 27.3 2.6 24 467-490 2-25 (26)
395 PF09205 DUF1955: Domain of un 81.5 28 0.0006 31.7 11.0 32 432-463 2-33 (161)
396 PF00244 14-3-3: 14-3-3 protei 81.2 30 0.00064 35.0 12.9 42 469-510 4-46 (236)
397 KOG2063 Vacuolar assembly/sort 80.7 72 0.0016 38.4 17.4 26 433-458 347-372 (877)
398 COG5600 Transcription-associat 80.3 3.9 8.4E-05 43.3 6.2 32 103-134 222-253 (413)
399 PF10373 EST1_DNA_bind: Est1 D 79.7 5.7 0.00012 40.9 7.6 62 553-614 1-62 (278)
400 PF10255 Paf67: RNA polymerase 79.7 30 0.00064 37.9 12.9 71 424-494 114-192 (404)
401 PF10516 SHNi-TPR: SHNi-TPR; 79.6 3.2 6.9E-05 28.9 3.6 29 467-495 2-30 (38)
402 PF11817 Foie-gras_1: Foie gra 79.6 44 0.00095 34.0 13.8 78 585-662 155-244 (247)
403 PF09670 Cas_Cas02710: CRISPR- 79.3 30 0.00065 37.7 13.1 60 538-597 135-198 (379)
404 KOG1920 IkappaB kinase complex 79.2 95 0.0021 38.2 17.6 50 606-662 1003-1052(1265)
405 PF15015 NYD-SP12_N: Spermatog 79.1 11 0.00023 40.7 8.9 59 537-595 231-289 (569)
406 PF10373 EST1_DNA_bind: Est1 D 78.2 7.1 0.00015 40.2 7.7 62 519-580 1-62 (278)
407 TIGR03362 VI_chp_7 type VI sec 77.7 27 0.00059 36.7 11.7 123 6-129 103-278 (301)
408 PF04348 LppC: LppC putative l 77.4 0.74 1.6E-05 52.5 0.0 106 20-127 7-124 (536)
409 COG3947 Response regulator con 77.1 8.7 0.00019 39.4 7.4 55 607-661 284-338 (361)
410 COG5536 BET4 Protein prenyltra 76.2 27 0.00058 35.8 10.4 161 517-677 49-234 (328)
411 smart00299 CLH Clathrin heavy 75.8 62 0.0013 29.3 14.9 36 511-546 18-53 (140)
412 KOG1920 IkappaB kinase complex 75.6 44 0.00096 40.8 13.6 81 540-627 958-1051(1265)
413 PRK11619 lytic murein transgly 75.2 1.8E+02 0.0038 34.3 28.5 210 473-696 248-465 (644)
414 KOG4014 Uncharacterized conser 74.2 86 0.0019 30.2 16.8 183 464-665 32-233 (248)
415 KOG4279 Serine/threonine prote 73.0 36 0.00079 39.4 11.5 117 464-582 199-334 (1226)
416 KOG0546 HSP90 co-chaperone CPR 73.0 4.3 9.3E-05 42.7 4.2 129 539-682 227-355 (372)
417 COG3107 LppC Putative lipoprot 72.7 18 0.0004 40.2 9.0 114 18-134 44-166 (604)
418 KOG2062 26S proteasome regulat 72.3 59 0.0013 37.8 12.9 175 449-630 40-238 (929)
419 KOG0276 Vesicle coat complex C 71.8 45 0.00097 37.8 11.7 80 535-630 615-694 (794)
420 TIGR03504 FimV_Cterm FimV C-te 70.9 7.3 0.00016 28.0 3.8 25 674-698 3-27 (44)
421 smart00101 14_3_3 14-3-3 homol 70.5 1.3E+02 0.0028 30.6 16.1 41 470-510 5-48 (244)
422 KOG4279 Serine/threonine prote 69.8 27 0.00059 40.4 9.6 126 499-625 200-344 (1226)
423 KOG0546 HSP90 co-chaperone CPR 69.8 5.2 0.00011 42.1 3.9 121 573-708 227-347 (372)
424 PF00244 14-3-3: 14-3-3 protei 69.6 95 0.0021 31.4 13.0 164 502-665 3-198 (236)
425 PF10255 Paf67: RNA polymerase 69.2 7.4 0.00016 42.4 5.1 61 70-130 128-193 (404)
426 COG5536 BET4 Protein prenyltra 68.2 1.5E+02 0.0033 30.6 15.6 54 484-537 92-147 (328)
427 PF13041 PPR_2: PPR repeat fam 67.5 23 0.00049 25.8 6.1 26 604-629 5-30 (50)
428 PF00637 Clathrin: Region in C 67.5 1.7 3.7E-05 40.0 -0.1 81 8-89 13-95 (143)
429 KOG0686 COP9 signalosome, subu 67.5 1.5E+02 0.0032 32.3 14.0 95 569-663 151-256 (466)
430 KOG0687 26S proteasome regulat 67.5 1.7E+02 0.0036 31.0 13.9 97 534-630 104-209 (393)
431 PRK12798 chemotaxis protein; R 67.3 2E+02 0.0043 31.5 22.1 204 491-695 102-320 (421)
432 PF12854 PPR_1: PPR repeat 66.4 12 0.00026 25.0 4.0 26 602-627 7-32 (34)
433 KOG2062 26S proteasome regulat 66.0 2.5E+02 0.0054 33.0 16.1 185 442-629 367-564 (929)
434 TIGR03504 FimV_Cterm FimV C-te 65.9 12 0.00025 27.0 4.0 24 606-629 3-26 (44)
435 KOG0276 Vesicle coat complex C 65.7 63 0.0014 36.7 11.2 48 476-528 647-694 (794)
436 PHA02537 M terminase endonucle 65.7 22 0.00047 35.7 7.2 40 95-134 161-211 (230)
437 KOG0567 HEAT repeat-containing 65.1 1.7E+02 0.0037 30.0 13.9 206 437-663 54-260 (289)
438 TIGR02710 CRISPR-associated pr 65.1 85 0.0018 34.1 12.1 57 435-491 133-196 (380)
439 smart00386 HAT HAT (Half-A-TPR 64.7 18 0.00039 23.0 4.6 19 620-638 5-23 (33)
440 PF13041 PPR_2: PPR repeat fam 64.5 30 0.00065 25.1 6.3 28 569-596 4-31 (50)
441 smart00386 HAT HAT (Half-A-TPR 64.2 16 0.00034 23.2 4.3 27 481-507 2-28 (33)
442 COG4455 ImpE Protein of avirul 63.8 36 0.00077 33.7 8.0 63 575-637 8-70 (273)
443 PF04097 Nic96: Nup93/Nic96; 63.4 58 0.0013 38.1 11.4 27 677-704 512-538 (613)
444 PF12854 PPR_1: PPR repeat 63.4 13 0.00028 24.9 3.6 27 669-695 6-32 (34)
445 COG4455 ImpE Protein of avirul 62.5 49 0.0011 32.8 8.6 61 541-601 8-68 (273)
446 KOG0889 Histone acetyltransfer 61.9 3.1E+02 0.0067 38.2 17.9 43 670-712 2812-2854(3550)
447 KOG0686 COP9 signalosome, subu 60.3 1.4E+02 0.0029 32.5 12.1 95 603-697 151-256 (466)
448 KOG4521 Nuclear pore complex, 60.0 2.7E+02 0.0059 34.4 15.6 210 439-667 892-1134(1480)
449 PF14863 Alkyl_sulf_dimr: Alky 59.4 35 0.00075 31.5 6.9 49 467-515 71-119 (141)
450 PF06287 DUF1039: Protein of u 57.1 25 0.00054 27.7 4.6 57 13-69 4-61 (66)
451 KOG0292 Vesicle coat complex C 56.3 63 0.0014 38.3 9.5 31 429-459 988-1018(1202)
452 PF09797 NatB_MDM20: N-acetylt 55.7 3E+02 0.0064 29.7 24.9 46 582-627 197-242 (365)
453 TIGR02710 CRISPR-associated pr 55.6 2.1E+02 0.0046 31.1 13.0 54 540-593 136-196 (380)
454 cd02682 MIT_AAA_Arch MIT: doma 55.6 20 0.00042 29.2 4.0 50 100-156 5-54 (75)
455 COG5187 RPN7 26S proteasome re 54.7 2.2E+02 0.0047 29.6 12.0 131 448-579 98-237 (412)
456 COG5116 RPN2 26S proteasome re 54.6 1.3E+02 0.0028 34.0 11.2 157 468-631 61-237 (926)
457 PF11846 DUF3366: Domain of un 54.6 41 0.00089 32.6 7.1 44 657-701 132-175 (193)
458 KOG2758 Translation initiation 54.3 2.9E+02 0.0062 29.2 20.1 184 450-635 113-321 (432)
459 PF01535 PPR: PPR repeat; Int 54.0 19 0.00042 22.6 3.2 23 606-628 4-26 (31)
460 COG3014 Uncharacterized protei 53.8 3E+02 0.0065 29.3 14.2 106 443-563 39-154 (449)
461 PF08311 Mad3_BUB1_I: Mad3/BUB 53.1 1.7E+02 0.0037 26.3 14.3 43 586-628 81-125 (126)
462 PRK09687 putative lyase; Provi 52.8 2.9E+02 0.0062 28.7 27.7 219 467-702 38-266 (280)
463 PF04762 IKI3: IKI3 family; I 52.5 2.7E+02 0.0059 34.3 14.9 23 436-458 698-720 (928)
464 PF14863 Alkyl_sulf_dimr: Alky 52.2 41 0.00088 31.1 6.1 49 602-650 70-118 (141)
465 TIGR03362 VI_chp_7 type VI sec 51.8 3.1E+02 0.0067 28.8 17.2 37 512-548 111-147 (301)
466 cd02682 MIT_AAA_Arch MIT: doma 51.5 1.3E+02 0.0029 24.4 8.6 21 435-455 9-29 (75)
467 PF01535 PPR: PPR repeat; Int 51.2 21 0.00046 22.4 3.1 26 469-494 3-28 (31)
468 KOG2280 Vacuolar assembly/sort 50.0 5E+02 0.011 30.7 20.3 100 578-693 694-793 (829)
469 KOG0889 Histone acetyltransfer 49.7 4.7E+02 0.01 36.6 16.7 79 534-613 2812-2898(3550)
470 TIGR00756 PPR pentatricopeptid 49.1 34 0.00074 21.9 4.0 25 605-629 3-27 (35)
471 PRK15490 Vi polysaccharide bio 48.9 1.2E+02 0.0025 34.9 10.2 82 441-524 17-98 (578)
472 KOG2758 Translation initiation 48.1 3.6E+02 0.0078 28.5 25.2 248 445-702 48-320 (432)
473 KOG2561 Adaptor protein NUB1, 48.0 1.6E+02 0.0035 32.3 10.3 49 535-583 164-223 (568)
474 KOG4521 Nuclear pore complex, 47.0 6.5E+02 0.014 31.4 15.9 179 434-631 922-1132(1480)
475 KOG0687 26S proteasome regulat 46.7 3.8E+02 0.0083 28.4 13.5 98 568-665 104-210 (393)
476 PF04097 Nic96: Nup93/Nic96; 46.7 5.4E+02 0.012 30.1 17.7 21 435-455 114-134 (613)
477 TIGR00756 PPR pentatricopeptid 46.0 41 0.00089 21.5 4.0 26 673-698 3-28 (35)
478 TIGR02498 type_III_ssaH type I 45.7 1.1E+02 0.0024 25.0 6.7 65 8-72 12-77 (79)
479 cd02680 MIT_calpain7_2 MIT: do 45.5 39 0.00086 27.4 4.3 21 645-665 15-35 (75)
480 PF11846 DUF3366: Domain of un 45.2 68 0.0015 31.1 7.0 46 587-633 130-175 (193)
481 PF04090 RNA_pol_I_TF: RNA pol 44.9 2.9E+02 0.0062 27.1 10.9 60 537-596 44-104 (199)
482 COG5159 RPN6 26S proteasome re 44.5 3.9E+02 0.0084 27.8 20.9 201 470-698 7-234 (421)
483 cd02681 MIT_calpain7_1 MIT: do 44.4 43 0.00094 27.3 4.4 27 639-665 9-35 (76)
484 PHA02537 M terminase endonucle 44.2 29 0.00062 34.8 4.1 23 542-564 91-113 (230)
485 PF04090 RNA_pol_I_TF: RNA pol 43.2 3.3E+02 0.0072 26.7 12.3 62 569-630 42-104 (199)
486 PF07219 HemY_N: HemY protein 43.0 61 0.0013 28.3 5.6 26 471-496 64-89 (108)
487 PF04840 Vps16_C: Vps16, C-ter 42.8 4.4E+02 0.0095 28.0 18.6 98 578-692 187-284 (319)
488 PF13226 DUF4034: Domain of un 42.5 2.6E+02 0.0056 29.0 10.8 35 551-585 116-150 (277)
489 TIGR02508 type_III_yscG type I 42.5 71 0.0015 27.6 5.5 43 12-58 49-91 (115)
490 cd02680 MIT_calpain7_2 MIT: do 41.5 51 0.0011 26.8 4.4 18 614-631 18-35 (75)
491 cd02681 MIT_calpain7_1 MIT: do 41.3 47 0.001 27.0 4.2 17 580-596 18-34 (76)
492 PF04840 Vps16_C: Vps16, C-ter 41.1 4.6E+02 0.01 27.8 25.0 76 612-695 187-262 (319)
493 PF08238 Sel1: Sel1 repeat; I 40.7 53 0.0011 22.0 4.0 30 102-131 2-38 (39)
494 PF10952 DUF2753: Protein of u 40.7 1.3E+02 0.0028 27.0 7.0 65 606-670 5-88 (140)
495 PF06957 COPI_C: Coatomer (COP 40.7 1.1E+02 0.0023 33.8 8.1 32 429-460 201-232 (422)
496 PRK09687 putative lyase; Provi 40.7 4.4E+02 0.0095 27.3 25.6 207 449-672 53-269 (280)
497 PF13812 PPR_3: Pentatricopept 40.6 67 0.0015 20.6 4.4 27 672-698 3-29 (34)
498 PF13226 DUF4034: Domain of un 40.6 3E+02 0.0065 28.5 10.9 134 473-619 7-150 (277)
499 PF04348 LppC: LppC putative l 40.3 9.3 0.0002 43.7 0.0 91 537-627 27-123 (536)
500 KOG2561 Adaptor protein NUB1, 40.2 1.3E+02 0.0027 33.0 8.2 26 673-698 270-295 (568)
No 1
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-46 Score=402.01 Aligned_cols=589 Identities=42% Similarity=0.647 Sum_probs=400.2
Q ss_pred CcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcchHHHHHHHhcCCccchhHHHHHhHHH-----HHHHHhhhccc
Q 005133 97 IPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCMLGAAEEATAVFSEAAAL-----CIQKQYLQNGL 171 (713)
Q Consensus 97 ~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~~~a~~~L~~~~~~~~~~~~f~~~~~~-----~~~~~~~~~~~ 171 (713)
+++.|..+|++|.+| ..++...+...+++|+..+|++|.||..||.+|........+.....+ .+++.+...-.
T Consensus 2 f~~lAcf~yllg~~y-r~~~~~~~s~~~r~als~~p~~~safs~l~~l~~~~~l~t~l~~v~~l~~q~tl~~nR~~~~~~ 80 (638)
T KOG1126|consen 2 FGDLACFYYLLGIIY-RGARFEHSSQVIRKALSLEPLVWSAFSSLCSLGSDDVLSTCLGSVNILLWQNTLNENRYSGSDS 80 (638)
T ss_pred CcchhhHHHhhchhh-hhhHHHHHHHHhhhhhccCchHHHHHHHHHhhhhHHHHHHhhcccchHHHHHHHHHHHhccccc
Confidence 566777799999999 999999999999999999999999999999999444444444321111 11122211000
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCChhhhhhhhhcccCCCCCCCCCccccccccCCCCCCCCCCCCccCCCCCCccCCC
Q 005133 172 ATQNLYLPNEDRNLVSSKSAGTEDISPRQLKHMQANNLRDIPGNYHGAAVSAAAASQPLNGGPSNASFYNTPSPITTQLS 251 (713)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (713)
..+. ...+++ ..+.+.+....+.-..+...++.++. ++-.+...++...++-...+++|.- +
T Consensus 81 -------a~e~-~ntdS~-~~nidss~ss~~~v~~s~~l~~Ls~~------~~~kp~t~rs~~~~~~~~sslSP~~---s 142 (638)
T KOG1126|consen 81 -------ATEF-HNTDSN-VLNIDSSVSSPKHVPLSPGLDDLSKQ------AQKKPNTLRSLVRNSADLSSLSPFR---S 142 (638)
T ss_pred -------cccc-ccccCc-ccCccccccccCCCCCCCCccchhhc------ccCCCccchhhhcCCcccCCCCccc---c
Confidence 0011 000000 00001100000000000000000000 0000000010001111122222211 3
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccCCccccccCCccccccccccCCCC-CCCcccccccccCCCCCcc
Q 005133 252 GVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFVDEGKLRKISGRLFSDSG-PRRSTRLAGEAGANANMST 330 (713)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~rl~~~~~~~~~~~~ 330 (713)
++.|+ | +++.|.+.|..++..++.+.-.+..+.+..+..+..++.+++..++..+..+ .|++.++.........++.
T Consensus 143 ~i~P~-L-~~~sP~~~n~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~ss~ 220 (638)
T KOG1126|consen 143 GILPP-L-TPPSPAVANPTSLISNSLPKICVSSRSRSSRTASVSEGFLLPKSPEARSSSSINRNSESLAADASNSKASST 220 (638)
T ss_pred cCCCC-C-CCCCCCCCCCcccccCCCcccccCCCCcccchhccccccccccChhhhhcccccccchhhccchhcCccccc
Confidence 33333 2 2222444443333333333333444445566666666666666666555544 5666666544322221211
Q ss_pred ccccCCC-CCCCCcccCCCcCcccccccccccCCcCCCcc-ccccCCCCCCCCccccCcCCccccCCCCCCCccccccCC
Q 005133 331 TTVAGNG-TTNSSKYLGGSKLSSVALRSVTLRKGQSWANE-NIDEGMRNEPFDDSRANTASTVSSSFPTSDTRSAVQEGT 408 (713)
Q Consensus 331 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (713)
++-.... +.+.+..+++++.......+...+....++.. .....++...+++.++++..+.+....... +..
T Consensus 221 t~~~~s~~~~~~~~~~~~~~s~~~~~~s~t~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~------~~~ 294 (638)
T KOG1126|consen 221 TPRTISLNVGKPSSYLKVRKSLKLASESKTSKENNKRARIQKKFVNPRDENFNESRTNDLNTISSTASEGP------EES 294 (638)
T ss_pred ccchhcccccCChhhhhhhhhhHhhcCCccccccchhhhhhcccCCCCCccccccCcCCccccccccccCc------ccc
Confidence 1101000 01111112222222222222222211111111 111122333344444443333222111111 111
Q ss_pred cc-ccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHH
Q 005133 409 TV-PIGGTAMNGSRIMTGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAER 487 (713)
Q Consensus 409 ~~-~~~~~~~~~~~~~~~~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 487 (713)
.. ..+...++...+......++++++.+++|+....+.++.+|+..|.++....++.+|++..+|++|+++++|++|.+
T Consensus 295 ~~~n~~~~~~~~~~l~~~~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~ 374 (638)
T KOG1126|consen 295 KGPNPGELAPQSFGLKDDASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAER 374 (638)
T ss_pred cCCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22334455555556688999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005133 488 AFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF 567 (713)
Q Consensus 488 ~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~ 567 (713)
+|+.+.+..|...+.+..+..++|++.+..+...+.+.+++.+|..|+.|+.+|+||..+++++.|+++|++|++++|.+
T Consensus 375 ~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f 454 (638)
T KOG1126|consen 375 IFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF 454 (638)
T ss_pred HHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 647 (713)
.++|..+|+-+....++|.|..+|++|+..+|.+..+|+++|.+|.++++++.|+-+|++|++++|.+..+...+|.++.
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQH 534 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 648 ALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 648 ~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
++|+.++|+.+|++|+.++|.++...+..|.+++.++++++|+..++++.++.|++..++++||.
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgk 599 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGK 599 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999884
No 2
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=350.44 Aligned_cols=479 Identities=18% Similarity=0.187 Sum_probs=388.3
Q ss_pred HHHHHHHHHHhhccchhhHHHHHhhhhcCCCchhHHHHHHHHhhcCCHHHHHHHHhcC----CCcchhHHHHHHHhhcCC
Q 005133 4 ILTDCVQNSLRYFMYRNAIFLCERLCAEFPSEVNLQLLATCYLQNNQAYAAYNILKGT----QMALSRYLFAVACYQMDL 79 (713)
Q Consensus 4 ~l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~~~llA~~~~~~~~~~~A~~~l~~~----~~~~~~~l~A~~~~~l~~ 79 (713)
..|++++++|++++|..|+|||+|+...+-++.++|++|+|||..|+|+||..++... .+..|+||+|+|++++++
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4566777999999999999999999999988889999999999999999999999876 578999999999999999
Q ss_pred hhHHHHhhCCC------------C-----CCCc-----cCcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcchHH
Q 005133 80 LSEAEAALSPV------------N-----EPSA-----EIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAA 137 (713)
Q Consensus 80 ~~ea~~~L~~~------------~-----~~~~-----~~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~~~a 137 (713)
|++|..+|... + +... .+.-.+.+++++|++|..+.++++|.++|++||..|++|+||
T Consensus 98 ~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea 177 (611)
T KOG1173|consen 98 WDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEA 177 (611)
T ss_pred HHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHH
Confidence 99999999832 0 0111 122337899999999999999999999999999999999999
Q ss_pred HHHHHhcCCcc--chhHHHHHhHHHHHHHHhhhcccccccCCCCCCCCccccCCCCCCCCCChhhhhhhhhcccCCCCCC
Q 005133 138 YEELCMLGAAE--EATAVFSEAAALCIQKQYLQNGLATQNLYLPNEDRNLVSSKSAGTEDISPRQLKHMQANNLRDIPGN 215 (713)
Q Consensus 138 ~~~L~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (713)
|+.|....+.. +...+|.....-.+...++ +.-...
T Consensus 178 ~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~-----------------------------e~l~~l------------- 215 (611)
T KOG1173|consen 178 FEKLVSAHMLTAQEEFELLESLDLAMLTKEDV-----------------------------ERLEIL------------- 215 (611)
T ss_pred HHHHHHHHhcchhHHHHHHhcccHHhhhhhHH-----------------------------HHHHHH-------------
Confidence 99997654432 2233333210000000000 000000
Q ss_pred CCCccccccccCCCCCCCCCCCCccCCCCCCccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccCCcccccc
Q 005133 216 YHGAAVSAAAASQPLNGGPSNASFYNTPSPITTQLSGVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFVD 295 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (713)
|..-
T Consensus 216 ------------------------yel~---------------------------------------------------- 219 (611)
T KOG1173|consen 216 ------------------------YELK---------------------------------------------------- 219 (611)
T ss_pred ------------------------HHhh----------------------------------------------------
Confidence 0000
Q ss_pred CCccccccccccCCCCCCCcccccccccCCCCCccccccCCCCCCCCcccCCCcCcccccccccccCCcCCCccccccCC
Q 005133 296 EGKLRKISGRLFSDSGPRRSTRLAGEAGANANMSTTTVAGNGTTNSSKYLGGSKLSSVALRSVTLRKGQSWANENIDEGM 375 (713)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (713)
..+..+ + .+..
T Consensus 220 -------------------~~k~~n-----~---------------------------------------------~~~~ 230 (611)
T KOG1173|consen 220 -------------------LCKNRN-----E---------------------------------------------ESLT 230 (611)
T ss_pred -------------------hhhhcc-----c---------------------------------------------cccc
Confidence 000000 0 0000
Q ss_pred CCCCCCccccCcCCccccCCCCCCCccccccCCccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHccCCHHHHHHHH
Q 005133 376 RNEPFDDSRANTASTVSSSFPTSDTRSAVQEGTTVPIGGTAMNGSRIMTGASDLLGLLRILGEGYRMSCMYRCKDALDVY 455 (713)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l 455 (713)
++ .+ ....+.... +.-...++..++..++|.+..+++
T Consensus 231 r~--------~~---------------------------------~sl~~l~~~--~dll~~~ad~~y~~c~f~~c~kit 267 (611)
T KOG1173|consen 231 RN--------ED---------------------------------ESLIGLAEN--LDLLAEKADRLYYGCRFKECLKIT 267 (611)
T ss_pred cC--------ch---------------------------------hhhhhhhhc--HHHHHHHHHHHHHcChHHHHHHHh
Confidence 00 00 000111111 223446778889999999999999
Q ss_pred HcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 005133 456 LKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQ 535 (713)
Q Consensus 456 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~ 535 (713)
+.+++.+|-...++-..--++++.|+..+-...-.+.++..|+.+..|+..|..|...|++.+|..++-++..++|....
T Consensus 268 ~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp 347 (611)
T KOG1173|consen 268 EELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP 347 (611)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH
Confidence 99999887655554444449999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 536 SWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ 615 (713)
Q Consensus 536 ~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~ 615 (713)
+|...|..|...++.++|+.+|..|-++-|........+|.-|...+.++-|.+.|.+|+.+.|.++-++..+|.+.+..
T Consensus 348 aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~ 427 (611)
T KOG1173|consen 348 AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY 427 (611)
T ss_pred HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhC----C---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 005133 616 EKFEFSEHHFRMAFQIS----P---HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDE 688 (713)
Q Consensus 616 g~~~eA~~~l~kal~~~----p---~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~e 688 (713)
+.|.+|..+|+.++..- + .....+.+||.++.+++++++|+.+|++++.+.|.++.++..+|.+|..+|+++.
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 99999999999998432 1 2344688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCChhHHHhccC
Q 005133 689 ALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 689 A~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
|+++|.+++.+.|++..+--.|+.
T Consensus 508 Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 508 AIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHH
Confidence 999999999999999777666654
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-38 Score=333.15 Aligned_cols=464 Identities=17% Similarity=0.149 Sum_probs=383.2
Q ss_pred HHHHHHHHHHhhccchhhHH-HHHhhhhcCCCchhHHHHHHHHhhcCCHHHHHHHHhcC-----CCcchhHHHHHHHhhc
Q 005133 4 ILTDCVQNSLRYFMYRNAIF-LCERLCAEFPSEVNLQLLATCYLQNNQAYAAYNILKGT-----QMALSRYLFAVACYQM 77 (713)
Q Consensus 4 ~l~~~i~~~l~~~~~~~A~f-laerl~a~~~~~~~~~llA~~~~~~~~~~~A~~~l~~~-----~~~~~~~l~A~~~~~l 77 (713)
+||+.-...|++.--.+..- +...+.-....+.++.-||.-.|..|+|++|...-.-. ...+...++.-.++..
T Consensus 16 ~~~~~~~~~ld~~~~s~~s~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~ 95 (966)
T KOG4626|consen 16 QLREAFSRKLDQSVSSSGSSSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG 95 (966)
T ss_pred ccHHHHHHHhccCcccccchHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcc
Confidence 46666666676644443332 33333333334667899999999999999998765432 4557777888888888
Q ss_pred CChhHHHHhhCCCCCCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcchHHHHHHHhc----CCccchhHH
Q 005133 78 DLLSEAEAALSPVNEPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCML----GAAEEATAV 153 (713)
Q Consensus 78 ~~~~ea~~~L~~~~~~~~~~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~~~a~~~L~~~----~~~~~~~~~ 153 (713)
++++...+--. .-.+..|..+..+.=+|.+++..|....|...|+.|++++|.+.+||..|.-- |....+.+.
T Consensus 96 ~r~d~s~a~~~---~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~ 172 (966)
T KOG4626|consen 96 SRLDKSSAGSL---LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQC 172 (966)
T ss_pred cchhhhhhhhh---hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHH
Confidence 88888766432 22345677788888899999999999999999999999999999999887332 666667777
Q ss_pred HHHhHHHHHHHHhhhcccccccCCCCCCCCccccCCCCCCCCCChhhhhhhhhcccCCCCCCCCCccccccccCCCCCCC
Q 005133 154 FSEAAALCIQKQYLQNGLATQNLYLPNEDRNLVSSKSAGTEDISPRQLKHMQANNLRDIPGNYHGAAVSAAAASQPLNGG 233 (713)
Q Consensus 154 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (713)
|.....+ +++....
T Consensus 173 ~~~alql---nP~l~ca--------------------------------------------------------------- 186 (966)
T KOG4626|consen 173 FFEALQL---NPDLYCA--------------------------------------------------------------- 186 (966)
T ss_pred HHHHHhc---Ccchhhh---------------------------------------------------------------
Confidence 7655432 0000000
Q ss_pred CCCCCccCCCCCCccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccCCccccccCCccccccccccCCCCCC
Q 005133 234 PSNASFYNTPSPITTQLSGVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFVDEGKLRKISGRLFSDSGPR 313 (713)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (713)
++..|++..+
T Consensus 187 ------------------------------------------------------------------~s~lgnLlka---- 196 (966)
T KOG4626|consen 187 ------------------------------------------------------------------RSDLGNLLKA---- 196 (966)
T ss_pred ------------------------------------------------------------------hcchhHHHHh----
Confidence 0000000000
Q ss_pred CcccccccccCCCCCccccccCCCCCCCCcccCCCcCcccccccccccCCcCCCccccccCCCCCCCCccccCcCCcccc
Q 005133 314 RSTRLAGEAGANANMSTTTVAGNGTTNSSKYLGGSKLSSVALRSVTLRKGQSWANENIDEGMRNEPFDDSRANTASTVSS 393 (713)
Q Consensus 314 ~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (713)
.-||.
T Consensus 197 -~Grl~-------------------------------------------------------------------------- 201 (966)
T KOG4626|consen 197 -EGRLE-------------------------------------------------------------------------- 201 (966)
T ss_pred -hcccc--------------------------------------------------------------------------
Confidence 00111
Q ss_pred CCCCCCCccccccCCccccCCCCCCcchhhhhHHHHHH--------HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCC
Q 005133 394 SFPTSDTRSAVQEGTTVPIGGTAMNGSRIMTGASDLLG--------LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT 465 (713)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~ 465 (713)
++..-++. .+.+-..|..+..+|+...|+..|+++++.+|+.
T Consensus 202 ------------------------------ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f 251 (966)
T KOG4626|consen 202 ------------------------------EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF 251 (966)
T ss_pred ------------------------------hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc
Confidence 11111111 1123345666678999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 545 (713)
..+|+++|.+|-+.+.|++|+.+|.+++.+.|.+..++.+++.+|+.+|..+-|+..|++++++.|..++++..+|..+.
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK 331 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005133 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHF 625 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l 625 (713)
..|+..+|..+|.+++.+.|..+++..++|.+|..+|.+++|...|+++++..|+...++.+||.+|.++|++++|+.+|
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 626 RMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 626 ~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
++++++.|..++++.++|..|..+|+.+.|+.+|.+|+.++|...+++.+||.+|...|+..+|+..|+.+++++|+.++
T Consensus 412 kealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 412 KEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc
Q 005133 706 VYALMG 711 (713)
Q Consensus 706 ~~~~Lg 711 (713)
++.+|.
T Consensus 492 A~cNll 497 (966)
T KOG4626|consen 492 AYCNLL 497 (966)
T ss_pred hhhHHH
Confidence 998775
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-36 Score=320.70 Aligned_cols=274 Identities=15% Similarity=0.146 Sum_probs=268.3
Q ss_pred HHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 005133 439 GYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMK 518 (713)
Q Consensus 439 a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~ 518 (713)
|..+-.+|+..+|..+|.+++..+|.-+.+|..+|-++..+|+...|+..|+++++++|...+++.++|.+|...+.+++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 44455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 005133 519 LSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD 598 (713)
Q Consensus 519 A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~ 598 (713)
|+..|.+++.+.|.++.++..+|.+|..+|..+-|+..|++++++.|..+.++.++|..+...|+..+|+.+|.+++.+.
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005133 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (713)
Q Consensus 599 p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~ 678 (713)
|.++++.++||.+|.++|++++|..+|+++++..|+.+.++.+||.+|..+|++++|+.+|++++.+.|...+++.++|.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGn 430 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGN 430 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 679 ILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 679 ~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
.|..+|+.+.|+..|.+++.++|..++++.+||.
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 9999999999999999999999999999999874
No 5
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-33 Score=288.00 Aligned_cols=260 Identities=32% Similarity=0.552 Sum_probs=247.7
Q ss_pred HHHHccCCHHHHHHHHHcCccc-CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 005133 440 YRMSCMYRCKDALDVYLKLPHK-HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMK 518 (713)
Q Consensus 440 ~~l~~~g~~~eAi~~l~~~~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~ 518 (713)
..+....+.++++.-++..... .|....+-...|.+.+.+.|+++|+..|+.+++.+|...+-+..++.+++-..+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 3333444678888888887776 788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 005133 519 LSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD 598 (713)
Q Consensus 519 A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~ 598 (713)
...+.+.+..++.-.+++.+.+|+.|...+++++|+.+|+++++++|....+|..+|+-|..+.+...|+..|++|++++
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005133 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (713)
Q Consensus 599 p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~ 678 (713)
|.|..+|++||.+|.-++...=|+-+|++|++..|+++.+|..||.||.++++.++|+++|.+++.....+..++..+|.
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHH
Q 005133 679 ILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 679 ~~~~~g~~~eA~~~~~kal~l 699 (713)
+|.++++..+|..+|++.++.
T Consensus 475 Lye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999983
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-31 Score=320.88 Aligned_cols=276 Identities=19% Similarity=0.217 Sum_probs=256.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
+...|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..|+++++.+|++..++..++.++...|
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 44556777888999999999999888888888889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a 594 (713)
++++|..+++.+.+..|.++..+..+|.++...|++++|+..|++++...|.. ..+..++.++...|++++|+..++++
T Consensus 684 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999899999999999999999999999999999999998887 67788999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005133 595 LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (713)
Q Consensus 595 l~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~ 674 (713)
++.+|++..+++.+|.+|...|++++|+.+|+++++..|+++.++..+|+++...|+ .+|+.++++++...|+++..+.
T Consensus 763 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 763 LKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 675 QKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 675 ~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
.+|.++...|++++|+.+|+++++..|.++.+++.+|.
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 879 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 99999999999999999999999999999999887764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3e-30 Score=311.22 Aligned_cols=474 Identities=18% Similarity=0.107 Sum_probs=397.5
Q ss_pred HHHHHHHHHHhhccchhhHHHHHhhhhcCCCc-hhHHHHHHHHhhcCCHHHHHHHHhcC-----CCcchhHHHHHHHhhc
Q 005133 4 ILTDCVQNSLRYFMYRNAIFLCERLCAEFPSE-VNLQLLATCYLQNNQAYAAYNILKGT-----QMALSRYLFAVACYQM 77 (713)
Q Consensus 4 ~l~~~i~~~l~~~~~~~A~flaerl~a~~~~~-~~~~llA~~~~~~~~~~~A~~~l~~~-----~~~~~~~l~A~~~~~l 77 (713)
.+...-...+..+.|+.|+...++.....|+. +..+.+|.+|+..|++.+|...+++. +.....+.+|+|+...
T Consensus 24 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (899)
T TIGR02917 24 SLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQ 103 (899)
T ss_pred HHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHC
Confidence 34555677889999999999999999999974 68899999999999999999999875 4567889999999999
Q ss_pred CChhHHHHhhCCCCCCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcchHHHHHHHhc----CCccchhHH
Q 005133 78 DLLSEAEAALSPVNEPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCML----GAAEEATAV 153 (713)
Q Consensus 78 ~~~~ea~~~L~~~~~~~~~~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~~~a~~~L~~~----~~~~~~~~~ 153 (713)
|++++|+..+... .....|..+.+++++|.+|...|+.++|..+|.+++..+|...+++..++.+ |...++..+
T Consensus 104 g~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (899)
T TIGR02917 104 GKFQQVLDELPGK--TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL 181 (899)
T ss_pred CCHHHHHHhhccc--ccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999631 1123455677999999999999999999999999999999999988877543 655566666
Q ss_pred HHHhHHHHHHHHhhhcccccccCCCCCCCCccccCCCCCCCCCChhhhhhhhhcccCCCCCCCCCccccccccCCCCCCC
Q 005133 154 FSEAAALCIQKQYLQNGLATQNLYLPNEDRNLVSSKSAGTEDISPRQLKHMQANNLRDIPGNYHGAAVSAAAASQPLNGG 233 (713)
Q Consensus 154 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (713)
+....... +. .+... .
T Consensus 182 ~~~~~~~~-------------------------------~~--~~~~~-~------------------------------ 197 (899)
T TIGR02917 182 IDEVLTAD-------------------------------PG--NVDAL-L------------------------------ 197 (899)
T ss_pred HHHHHHhC-------------------------------CC--ChHHH-H------------------------------
Confidence 65432210 00 00000 0
Q ss_pred CCCCCccCCCCCCccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccCCccccccCCccccccccccCCCCCC
Q 005133 234 PSNASFYNTPSPITTQLSGVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFVDEGKLRKISGRLFSDSGPR 313 (713)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (713)
.. +.++..
T Consensus 198 ------------------------------------------------------------~~--------~~~~~~---- 205 (899)
T TIGR02917 198 ------------------------------------------------------------LK--------GDLLLS---- 205 (899)
T ss_pred ------------------------------------------------------------HH--------HHHHHh----
Confidence 00 000000
Q ss_pred CcccccccccCCCCCccccccCCCCCCCCcccCCCcCcccccccccccCCcCCCccccccCCCCCCCCccccCcCCcccc
Q 005133 314 RSTRLAGEAGANANMSTTTVAGNGTTNSSKYLGGSKLSSVALRSVTLRKGQSWANENIDEGMRNEPFDDSRANTASTVSS 393 (713)
Q Consensus 314 ~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (713)
......+ ...+......
T Consensus 206 ----------~g~~~~A-------------------------------------~~~~~~a~~~---------------- 222 (899)
T TIGR02917 206 ----------LGNIELA-------------------------------------LAAYRKAIAL---------------- 222 (899)
T ss_pred ----------cCCHHHH-------------------------------------HHHHHHHHhh----------------
Confidence 0000000 0000000000
Q ss_pred CCCCCCCccccccCCccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHH
Q 005133 394 SFPTSDTRSAVQEGTTVPIGGTAMNGSRIMTGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVG 473 (713)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg 473 (713)
.| .. ....+..+..++..|++++|...++.++...|..+.+++..|
T Consensus 223 ----------------------~p------~~------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 268 (899)
T TIGR02917 223 ----------------------RP------NN------PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKA 268 (899)
T ss_pred ----------------------CC------CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 00 00 113456677788999999999999999999999999999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005133 474 KAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETA 553 (713)
Q Consensus 474 ~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A 553 (713)
.+++..|++++|+..|+++++.+|....++..++.++...|++++|...+.+++...|.+..++..++.++...|++++|
T Consensus 269 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 269 LVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005133 554 LKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP 633 (713)
Q Consensus 554 l~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p 633 (713)
+..+++++...|.+...+..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++..|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 349 IATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 634 HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 634 ~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
........++.++...|++++|+..+++.+...|.++.++..+|.++...|++++|+..|+++++.+|++..+++.+|.
T Consensus 429 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 507 (899)
T TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507 (899)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888763
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.2e-30 Score=302.39 Aligned_cols=264 Identities=17% Similarity=0.184 Sum_probs=244.7
Q ss_pred HccCCHHHHHHHHHcCccc---CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 005133 443 SCMYRCKDALDVYLKLPHK---HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKL 519 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A 519 (713)
...++|++|+..|++++.. .|....++..+|.+++.+|++++|+..|+++++.+|....++..++.++...|++++|
T Consensus 305 ~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 3457899999999998865 4778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 005133 520 SYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA 599 (713)
Q Consensus 520 ~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p 599 (713)
+..++++++.+|.++.+|+.+|.++...|++++|+.+|+++++++|++..++..+|.++...|++++|+..|+++++..|
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHH-HHcCChHHHHHHHHHHHHhCCCChhH
Q 005133 600 RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVI------MSYLGTAM-HALKRSGEAIEMMEKAILADKKNPLP 672 (713)
Q Consensus 600 ~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~------~~~la~~~-~~~g~~eeAl~~l~kal~~~p~~~~~ 672 (713)
+++.++..+|.++...|++++|++.|++++++.|..... +...+.++ ...|++++|+.+|++++.++|++..+
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a 544 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIA 544 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 999999999999999999999999999999999875332 22333333 44799999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhH
Q 005133 673 MYQKANILLSLEKFDEALEVLEELKEYAPRESGV 706 (713)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 706 (713)
+..+|.++..+|++++|+.+|++++++.+...+.
T Consensus 545 ~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999999999998875553
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6.6e-30 Score=314.84 Aligned_cols=484 Identities=14% Similarity=0.051 Sum_probs=316.5
Q ss_pred hHHHHHHHHHHhhccchhhHHHHHhhhhcCCCc-hhHHHHHHHHhhcCCHHHHHHHHhcC-----CCcch----------
Q 005133 3 GILTDCVQNSLRYFMYRNAIFLCERLCAEFPSE-VNLQLLATCYLQNNQAYAAYNILKGT-----QMALS---------- 66 (713)
Q Consensus 3 ~~l~~~i~~~l~~~~~~~A~flaerl~a~~~~~-~~~~llA~~~~~~~~~~~A~~~l~~~-----~~~~~---------- 66 (713)
++|-+.+......+.++-|.-..+|++...|++ +.++.++.++++.|++.+|...+++. .++.+
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence 468888899999999999999999999999975 67899999999999999999999875 33333
Q ss_pred ------hHHHHHHHhhcCChhHHHHhhCCCCCCCccCcch-HHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcchHHHH
Q 005133 67 ------RYLFAVACYQMDLLSEAEAALSPVNEPSAEIPNG-AAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYE 139 (713)
Q Consensus 67 ------~~l~A~~~~~l~~~~ea~~~L~~~~~~~~~~p~~-a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~~~a~~ 139 (713)
.+..|+++...|++++|+..+. ..+...|.. ..+..+.+.+....|+.++|+..|+++++.+|...++..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~---~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~ 185 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYD---KLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRN 185 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHH---HHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3667889999999999999985 333333433 334445555666779999999999999999999999998
Q ss_pred HHHhc----CCccchhHHHHHhHHHHHHHHhhhcccccccCCCCCCCCccccCCCCCCCCCChhhhh-hhhhcccCCCCC
Q 005133 140 ELCML----GAAEEATAVFSEAAALCIQKQYLQNGLATQNLYLPNEDRNLVSSKSAGTEDISPRQLK-HMQANNLRDIPG 214 (713)
Q Consensus 140 ~L~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 214 (713)
.|..+ |...++...|......+. .. ..... ..+. .
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~--------------------------------~~-~~aa~~~~~~--l----- 225 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPA--------------------------------GR-DAAAQLWYGQ--I----- 225 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCC--------------------------------ch-HHHHHHHHHH--H-----
Confidence 88766 666667777765421000 00 00000 0000 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCccCCCCCCccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccCCccccc
Q 005133 215 NYHGAAVSAAAASQPLNGGPSNASFYNTPSPITTQLSGVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFV 294 (713)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (713)
..-+ . .+...
T Consensus 226 -------------------------~~~~-----------~--------------------------------~~~~~-- 235 (1157)
T PRK11447 226 -------------------------KDMP-----------V--------------------------------SDASV-- 235 (1157)
T ss_pred -------------------------hccC-----------C--------------------------------ChhhH--
Confidence 0000 0 00000
Q ss_pred cCCccccccccccCCCCCCCcccccccccCCCCCccccccCCCCCCCCcccCCCcCcccccccccccCCcCCCccccccC
Q 005133 295 DEGKLRKISGRLFSDSGPRRSTRLAGEAGANANMSTTTVAGNGTTNSSKYLGGSKLSSVALRSVTLRKGQSWANENIDEG 374 (713)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (713)
.. ..+...
T Consensus 236 ----------~~--------l~~~l~------------------------------------------------------ 243 (1157)
T PRK11447 236 ----------AA--------LQKYLQ------------------------------------------------------ 243 (1157)
T ss_pred ----------HH--------HHHHHH------------------------------------------------------
Confidence 00 000000
Q ss_pred CCCCCCCccccCcCCccccCCCCCCCccccccCCccccCCCCCCcchhhhhHHHHHH--------HHHHHHHHHHHHccC
Q 005133 375 MRNEPFDDSRANTASTVSSSFPTSDTRSAVQEGTTVPIGGTAMNGSRIMTGASDLLG--------LLRILGEGYRMSCMY 446 (713)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------ll~~l~~a~~l~~~g 446 (713)
..+...........+.. .......|..++..|
T Consensus 244 ----------------------------------------~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g 283 (1157)
T PRK11447 244 ----------------------------------------VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG 283 (1157)
T ss_pred ----------------------------------------HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC
Confidence 00000000000000000 001113366667778
Q ss_pred CHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHH--------------HHHHHHHHHH
Q 005133 447 RCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEG--------------MDIYSTVLYH 512 (713)
Q Consensus 447 ~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a--------------~~~la~~l~~ 512 (713)
++++|+..|++++...|.++.++..+|.+|+..|++++|+.+|+++++.+|++... ....+.++..
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88888888888887778778888888888888888888888888888877765321 1233566677
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----------------
Q 005133 513 LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGH---------------- 576 (713)
Q Consensus 513 ~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~---------------- 576 (713)
.|++++|+..++++++.+|.++.++..+|.++...|++++|+++|+++++.+|.+..++..++.
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 7778888888888888888777777778888888888888888888888777777655544333
Q ss_pred --------------------------HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 577 --------------------------EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 577 --------------------------~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~ 630 (713)
++...|++++|+.+|+++++.+|+++.+++.+|.+|...|++++|+..|+++++
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334567777888888888888888777777888888888888888888877777
Q ss_pred hCCCCHHHHH----------------------------------------------------------------------
Q 005133 631 ISPHSSVIMS---------------------------------------------------------------------- 640 (713)
Q Consensus 631 ~~p~~~~~~~---------------------------------------------------------------------- 640 (713)
..|.++.+++
T Consensus 524 ~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~ 603 (1157)
T PRK11447 524 QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST 603 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc
Confidence 7776654433
Q ss_pred ----HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 641 ----YLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 641 ----~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
.+|.++.+.|++++|+..|+++++.+|+++.++..++.+|...|++++|++.|+++++..|++..++..+|
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la 678 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA 678 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555555566666666666666666666666666666666666666666666666666665555544443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1.9e-28 Score=302.00 Aligned_cols=270 Identities=12% Similarity=0.038 Sum_probs=241.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTV----- 509 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~----- 509 (713)
.+..|..++..|++++|+..|++++..+|.+..+++.+|.++...|++++|+++|+++++.+|.+..++..++.+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 455677888999999999999999999999999999999999999999999999999999999987766554433
Q ss_pred -------------------------------------HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 005133 510 -------------------------------------LYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHET 552 (713)
Q Consensus 510 -------------------------------------l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~ 552 (713)
+...|++++|+..++++++.+|+++.+++.+|.+|...|++++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4457889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH--------------------------------------
Q 005133 553 ALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA-------------------------------------- 594 (713)
Q Consensus 553 Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a-------------------------------------- 594 (713)
|+..|+++++..|.++.+++.++..+...+++++|+..++++
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999988888887777777777777766542
Q ss_pred --HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005133 595 --LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLP 672 (713)
Q Consensus 595 --l~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~ 672 (713)
++..|.++..+..+|.++...|++++|+..|+++++..|+++.++..++.+|...|++++|++.|+++++..|+++.+
T Consensus 594 ~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~ 673 (1157)
T PRK11447 594 ALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNT 673 (1157)
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHH
Confidence 234678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Q 005133 673 MYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (713)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~ 704 (713)
+..+|.++...|++++|+.+|++++...|+++
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 99999999999999999999999999877654
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=1e-27 Score=278.00 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=220.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~ 513 (713)
.+...|..++..|++++|+..|++++..+|....+|..+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 005133 514 KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQS 593 (713)
Q Consensus 514 g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~ 593 (713)
|++++|+..++++++++|++..++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|++
T Consensus 413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHH------HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005133 594 ALRVDARHYNS------WYGLGMVY-LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (713)
Q Consensus 594 al~~~p~~~~~------~~~lg~~y-~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~ 666 (713)
++.+.|..... +...+.++ ...|++++|+.+++++++++|++..++..+|.++...|++++|+.+|++++++.
T Consensus 493 Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 493 AIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 99999874332 23333333 446999999999999999999999999999999999999999999999999998
Q ss_pred CCChh
Q 005133 667 KKNPL 671 (713)
Q Consensus 667 p~~~~ 671 (713)
+....
T Consensus 573 ~~~~e 577 (615)
T TIGR00990 573 RTEGE 577 (615)
T ss_pred ccHHH
Confidence 76444
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=3.6e-26 Score=264.97 Aligned_cols=248 Identities=13% Similarity=0.063 Sum_probs=181.5
Q ss_pred HHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHH
Q 005133 441 RMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY-SLEGMDIYSTVLYHLKEDMKL 519 (713)
Q Consensus 441 ~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~-~~~a~~~la~~l~~~g~~~~A 519 (713)
.+...|++++|+..+.++....|+.+.++..++ .++..|++++|+..+++++..+|. .......++.++...|++++|
T Consensus 153 ~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA 231 (656)
T PRK15174 153 TLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEA 231 (656)
T ss_pred HHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHH
Confidence 345677778888777777777777766665543 367777888888887777777653 333344556677777778888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 520 SYLAQELITTDRLAPQSWCAMGNCYSLQKDHET----ALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (713)
Q Consensus 520 ~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~----Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al 595 (713)
+..++++++..|+++.++..+|.++...|++++ |+..|+++++++|++..++..+|.++...|++++|+..+++++
T Consensus 232 ~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 232 IQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888877777777777778888877777775 6777788887777777777777888888888888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 005133 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQ 675 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~ 675 (713)
+.+|+++.++..+|.+|...|++++|+..|++++...|.+..++..+|.++...|++++|+..|+++++..|++.
T Consensus 312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~----- 386 (656)
T PRK15174 312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL----- 386 (656)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----
Confidence 777877777777788887888888888888777777777776666677777777888888888888877777654
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC
Q 005133 676 KANILLSLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 676 la~~~~~~g~~~eA~~~~~kal~l~P 701 (713)
...|++|+..|.++++..+
T Consensus 387 -------~~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 387 -------PQSFEEGLLALDGQISAVN 405 (656)
T ss_pred -------hhhHHHHHHHHHHHHHhcC
Confidence 2344556666666665443
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=2.3e-26 Score=266.56 Aligned_cols=217 Identities=11% Similarity=0.011 Sum_probs=179.7
Q ss_pred HHccCCHHHHHHHHHcCcccCC-CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH--
Q 005133 442 MSCMYRCKDALDVYLKLPHKHY-NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMK-- 518 (713)
Q Consensus 442 l~~~g~~~eAi~~l~~~~~~~~-~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~-- 518 (713)
++..|++++|+..+++++...| ........++.++...|++++|+..|+++++.+|++..++..+|.++...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 4567888899888888777654 3334445667888888899999999999988888888888888888888888875
Q ss_pred --HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 519 --LSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (713)
Q Consensus 519 --A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~ 596 (713)
|...++++++.+|+++.++..+|.++...|++++|+.+++++++++|+++.++..+|.++...|++++|+..|++++.
T Consensus 267 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 267 LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888888888899998889999999999998888888888888888888888999999999988888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005133 597 VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (713)
Q Consensus 597 ~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~ 670 (713)
.+|++...+..+|.++...|++++|+..|+++++..|++. ...+++|+..|.+++...+...
T Consensus 347 ~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~ 408 (656)
T PRK15174 347 EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPP 408 (656)
T ss_pred hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCcc
Confidence 8888877777788888888899999999998888888864 2456678888888877655433
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=5.9e-26 Score=268.93 Aligned_cols=255 Identities=14% Similarity=0.074 Sum_probs=231.0
Q ss_pred HHHHcCcccCCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 005133 453 DVYLKLPHKHYN--TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTD 530 (713)
Q Consensus 453 ~~l~~~~~~~~~--~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~ 530 (713)
..+..++...|. .+.+|+.+|.++.. +++++|+..|.+++...|+.. ....++.++...|++++|+..+++++...
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 333344555566 88899999999987 899999999999999999754 35666777789999999999999987775
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 531 RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (713)
Q Consensus 531 p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~ 610 (713)
|. ...++.+|.++...|++++|+.+|+++++.+|.....+..++..+...|++++|+..|+++++.+|+ ..++..+|.
T Consensus 540 p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~ 617 (987)
T PRK09782 540 MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARAT 617 (987)
T ss_pred CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 55 4567899999999999999999999999999999888877777777889999999999999999997 999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 005133 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEAL 690 (713)
Q Consensus 611 ~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~ 690 (713)
++.+.|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++++.|+++.+++.+|.++..+|++++|+
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCChhHHHhcc
Q 005133 691 EVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 691 ~~~~kal~l~P~~~~~~~~Lg 711 (713)
.+|+++++++|+...+....|
T Consensus 698 ~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 698 HYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred HHHHHHHhcCCCCchhhhhhh
Confidence 999999999999988776554
No 15
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.2e-25 Score=242.26 Aligned_cols=271 Identities=13% Similarity=0.110 Sum_probs=256.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
+...|..++..++|++|..+|+.+.+..|......-....+++++++--+--.+.+..+..+|+.++.|..+|.|+..++
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQk 435 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQK 435 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhh
Confidence 34567778999999999999999998888766666667777888887777777788889999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a 594 (713)
+++.|+.+++++++++|....+|..+|.-+....++|.|..+|++|+..+|.+..+|+.+|.+|.++++++.|.-.|++|
T Consensus 436 dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA 515 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA 515 (638)
T ss_pred HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005133 595 LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (713)
Q Consensus 595 l~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~ 674 (713)
++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++...+..|.+++.++++++|+..+++..++.|++..+++
T Consensus 516 ~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~ 595 (638)
T KOG1126|consen 516 VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFA 595 (638)
T ss_pred hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 675 QKANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 675 ~la~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
.+|.+|.++|+.+.|+..|--|.+++|.-..
T Consensus 596 llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 596 LLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 9999999999999999999999999997554
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.3e-25 Score=246.31 Aligned_cols=276 Identities=17% Similarity=0.165 Sum_probs=248.0
Q ss_pred HHHHHHHccCCHHHHHHHHHcCccc-----CCC-----CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 437 GEGYRMSCMYRCKDALDVYLKLPHK-----HYN-----TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIY 506 (713)
Q Consensus 437 ~~a~~l~~~g~~~eAi~~l~~~~~~-----~~~-----~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~l 506 (713)
..|..++..|.+.+|...|.++... +++ .....|++|.++-..++++.|.+.|..+++.+|.+.+++..+
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 3455667889999999999887544 111 223589999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH----
Q 005133 507 STVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN--PRFAYGHTLCGHEYVA---- 580 (713)
Q Consensus 507 a~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~--p~~~~a~~~lg~~~~~---- 580 (713)
+......+...+|..++..++..+..++.+|..+|.+|....++..|.+-|..+++.- -.++++...||.+++.
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 9888888999999999999999999999999999999999999999999888877652 2467888889998765
Q ss_pred --------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 005133 581 --------LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRS 652 (713)
Q Consensus 581 --------~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 652 (713)
.+.+++|+++|.++++.+|.+..+-+++|.++...|++.+|+..|.++.+...+...+|.++|.||..+|+|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999988878889999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 653 GEAIEMMEKAILAD--KKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 653 eeAl~~l~kal~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
..|++.|+.+++.. .+++.++..||.++++.|.+.+|.+++.+++.+.|.++.+.+++|+
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 99999999999863 3578999999999999999999999999999999999999998875
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=4.2e-24 Score=252.65 Aligned_cols=136 Identities=14% Similarity=0.089 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhhccchhhHHHHHhhhhcCCCch-hHHHHHHHHhhcCCHHHHHHHHhcC-----CCcchhHHHHHHHhhc
Q 005133 4 ILTDCVQNSLRYFMYRNAIFLCERLCAEFPSEV-NLQLLATCYLQNNQAYAAYNILKGT-----QMALSRYLFAVACYQM 77 (713)
Q Consensus 4 ~l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~-~~~llA~~~~~~~~~~~A~~~l~~~-----~~~~~~~l~A~~~~~l 77 (713)
++-++++-++-.+.++.|+-+.+++....|.+. ....+|.++...|++.+|..++++. .++.+.+.+|.++++.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 566788888889999999999999987666554 6899999999999999999999984 5678899999999999
Q ss_pred CChhHHHHhhCCCCCCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcchHHHHHHHh
Q 005133 78 DLLSEAEAALSPVNEPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCM 143 (713)
Q Consensus 78 ~~~~ea~~~L~~~~~~~~~~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~~~a~~~L~~ 143 (713)
+++++|+..|. ......|+.+. ++.+|.++..+|+.++|+.+|+++++++|..-+++..|+.
T Consensus 97 g~~~eA~~~l~---~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 97 GQYDEALVKAK---QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred CCHHHHHHHHH---HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999994 45555788888 9999999999999999999999999999999888777655
No 18
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.1e-23 Score=210.91 Aligned_cols=257 Identities=18% Similarity=0.238 Sum_probs=187.8
Q ss_pred HHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 005133 452 LDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDR 531 (713)
Q Consensus 452 i~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p 531 (713)
..++-+.....+++...+..+|.+++..|++++|+..|+++..++|+...++..+|.++...|++++...+...++....
T Consensus 218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~ 297 (564)
T KOG1174|consen 218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK 297 (564)
T ss_pred HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh
Confidence 33344445556666666666777777777777777777777777776666666666666666666666666666666665
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 532 LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMV 611 (713)
Q Consensus 532 ~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~ 611 (713)
....-|+.-+..++..+++..|+.+-+++++.+|.+..++...|..+...++.++|+-.|+.|..+.|.+.+.|.+|..+
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 55566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHcCCH------------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005133 612 YLRQEKF------------------------------------EFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEA 655 (713)
Q Consensus 612 y~~~g~~------------------------------------~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeA 655 (713)
|...|++ ++|.+++++++++.|....+...+|.++...|+++++
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchH
Confidence 6555554 4566778888888888888999999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHh
Q 005133 656 IEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYAL 709 (713)
Q Consensus 656 l~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~ 709 (713)
+..+++.+...| +...+..||.++...+.+++|+.+|..++.++|++....-.
T Consensus 458 i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 458 IKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred HHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 999999999988 56788899999999999999999999999999998766543
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=7.6e-23 Score=242.58 Aligned_cols=266 Identities=13% Similarity=0.061 Sum_probs=246.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
++..|.++.. +++.+|+..|.+++...|.. +....+|.++...|++++|+..|++++...|.. ..+..++.++...|
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~G 556 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQPDA-WQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhCCch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCC
Confidence 3555666665 89999999999998888865 446677888889999999999999988776654 55788899999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a 594 (713)
+.++|..+++++++..|.....+..++......|++++|+..|+++++++|+ ..++..+|.++...|++++|+..|+++
T Consensus 557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 557 NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999888888887778889999999999999999996 999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005133 595 LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (713)
Q Consensus 595 l~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~ 674 (713)
+.++|+++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++..+|++++|+.+|+++++++|+...+..
T Consensus 636 L~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 636 LELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Q 005133 675 QKANILLSLEKFDEALEVLEELKEYAPRES 704 (713)
Q Consensus 675 ~la~~~~~~g~~~eA~~~~~kal~l~P~~~ 704 (713)
..|.+.....+++.|.+.+.+...+.|+..
T Consensus 716 ~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 716 LTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999999999999998765
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4.2e-23 Score=226.39 Aligned_cols=278 Identities=17% Similarity=0.121 Sum_probs=251.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS----LEGMDIYS 507 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~----~~a~~~la 507 (713)
+...+..|..+...|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++...+.. ...+..++
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 33556678888899999999999999999999999999999999999999999999999999864332 35678899
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcc
Q 005133 508 TVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA-----YGHTLCGHEYVALE 582 (713)
Q Consensus 508 ~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~-----~a~~~lg~~~~~~g 582 (713)
.++...|++++|...++++++..|....++..++.++...|++++|++.++++++..|... ..+..+|.++...|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999887653 35667899999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Q 005133 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS-SVIMSYLGTAMHALKRSGEAIEMMEK 661 (713)
Q Consensus 583 ~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~-~~~~~~la~~~~~~g~~eeAl~~l~k 661 (713)
++++|+.+|+++++.+|+...++..+|.+|...|++++|++.|+++++..|.+ ..++..++.+|...|++++|+..+++
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876 45678899999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhc
Q 005133 662 AILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALM 710 (713)
Q Consensus 662 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~L 710 (713)
+++..|+... +..++.++...|++++|+..++++++..|++..+...+
T Consensus 275 ~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 275 ALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 9999997654 48999999999999999999999999999987665443
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.7e-23 Score=213.24 Aligned_cols=240 Identities=19% Similarity=0.175 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 545 (713)
+.++...|..++-.|++-.|.+.|++++.++|.....+..++.+|....+.++....|.++.+++|.++++|+..|.+++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005133 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHF 625 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l 625 (713)
..+++++|+.-|++++.++|.+..++..++...++++++++++..|+.+.+..|..++++...|.++..+++|++|++.|
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC------CHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 626 RMAFQISPH------SSVIMSYLGTAMH-ALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 626 ~kal~~~p~------~~~~~~~la~~~~-~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
.+++++.|. ++..+...|.+.. -.+++..|+..+.+|++++|....++..||.+..++|+.++|+++|+++..
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999998 5555555444433 338999999999999999999999999999999999999999999999998
Q ss_pred HCCCChh
Q 005133 699 YAPRESG 705 (713)
Q Consensus 699 l~P~~~~ 705 (713)
+.....+
T Consensus 566 lArt~~E 572 (606)
T KOG0547|consen 566 LARTESE 572 (606)
T ss_pred HHHhHHH
Confidence 7665443
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.9e-23 Score=213.16 Aligned_cols=271 Identities=16% Similarity=0.188 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~ 511 (713)
....-.+|..+++.|+|++||++|..++...|+.+..|.+++-||...|+|++.++...++++++|++..+++..+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHH------------------HHHH------------H--hCC----------------------------
Q 005133 512 HLKEDMKLSYLA------------------QELI------------T--TDR---------------------------- 531 (713)
Q Consensus 512 ~~g~~~~A~~~~------------------~kal------------~--~~p---------------------------- 531 (713)
.+|++.+++... ++.+ . ..|
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 998876665311 1111 0 000
Q ss_pred ----------------------------------------CC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005133 532 ----------------------------------------LA---------PQSWCAMGNCYSLQKDHETALKNFQRAVQ 562 (713)
Q Consensus 532 ----------------------------------------~~---------~~~~~~la~~~~~~g~~~~Al~~~~kal~ 562 (713)
.+ ..++...|..++..|++-.|...|+++|.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 01 23344455666677777788888888888
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 563 LNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYL 642 (713)
Q Consensus 563 ~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 642 (713)
++|.+...|..+|.+|....+.++-...|.++..++|.++++|+..|.+++-.++|++|+.-|++++.++|.+...+..+
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 88877777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 643 GTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 643 a~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
+.+.+++++++++...|+.+.+..|..++++...|.++..+++|++|++.|++++++.|.
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 888888888888888888888888888888888888888888888888888888887777
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.8e-21 Score=216.85 Aligned_cols=276 Identities=16% Similarity=0.201 Sum_probs=219.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCC-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNT-GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~-~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~ 513 (713)
.+..|..+..+|+|++|..+|.++++..+++ ...++.+|..|+..|+++.|+.+|+++++..|++.+.+..+|.+|...
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 4555666678888888888888888877776 667788888888888888888888888888888888888888888877
Q ss_pred c----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCH
Q 005133 514 K----EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL-----NPRFAYGHTLCGHEYVALEDF 584 (713)
Q Consensus 514 g----~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~-----~p~~~~a~~~lg~~~~~~g~~ 584 (713)
+ ..++|..+..++++..|.+.++|..+|.++....-+.. +.+|.+|+.. .+-.+..+.++|..++..|++
T Consensus 390 ~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 390 AKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcCh
Confidence 5 46778888888888888888888888888877655555 8888888743 334467788888888888888
Q ss_pred HHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005133 585 ENGIRSYQSALRV-----DARH-----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGE 654 (713)
Q Consensus 585 eeAl~~~~~al~~-----~p~~-----~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ee 654 (713)
++|...|.+++.. +++. ....+++|.++...++++.|.+.|..+++..|...+++..+|.+....+...+
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHH
Confidence 8888888888776 1221 23478888888888888888888888888888888888888877777788888
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 655 AIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 655 Al~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
|..++..++..+..++.++..+|.+|....++..|.+-|+..++.--...++|..++
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 888888888888888888888888888888888888877777765444455555544
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=4.5e-21 Score=210.30 Aligned_cols=229 Identities=14% Similarity=0.123 Sum_probs=161.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA-----PQSWCAMGNC 543 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~-----~~~~~~la~~ 543 (713)
+..+|.+|...|++++|+.+|+++++..|....++..++.++...|++++|...++++++..|.. ...+..+|.+
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444445555544444444444432 2245677888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 005133 544 YSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-YNSWYGLGMVYLRQEKFEFSE 622 (713)
Q Consensus 544 ~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~-~~~~~~lg~~y~~~g~~~eA~ 622 (713)
+...|++++|+.+|+++++..|....++..+|.++...|++++|+..|++++..+|.+ ..++..++.+|...|++++|+
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888888888888888888888888888999999888888887765 456778888888889999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 005133 623 HHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLS--LEKFDEALEVLEELKE 698 (713)
Q Consensus 623 ~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~--~g~~~eA~~~~~kal~ 698 (713)
..++++++..|+...+ ..+|.++.+.|++++|+..++++++..|++......++..+.. .|+.++|+..+++.++
T Consensus 270 ~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 270 EFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 9999888888876544 7888888888999999999998888888776555444443322 4578888887777664
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=2e-21 Score=229.79 Aligned_cols=402 Identities=11% Similarity=-0.004 Sum_probs=319.2
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHhcC---C--CcchhHHHHHHHhhcCChhHHHHhhCCCCCCCccCcchHHHHHHHHH
Q 005133 35 EVNLQLLATCYLQNNQAYAAYNILKGT---Q--MALSRYLFAVACYQMDLLSEAEAALSPVNEPSAEIPNGAAGHYLMGL 109 (713)
Q Consensus 35 ~~~~~llA~~~~~~~~~~~A~~~l~~~---~--~~~~~~l~A~~~~~l~~~~ea~~~L~~~~~~~~~~p~~a~~~~llg~ 109 (713)
+.-+.-+.++....|++.+|..+..+. . .......+|.++.+++++++|+..+. ..+...|+.+.+.+.+|.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~---~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQ---KALSLEPQNDDYQRGLIL 91 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHhCCCCHHHHHHHHH
Confidence 456777888999999999999998875 2 22457889999999999999999984 334445888888999999
Q ss_pred HHHhcCChhHHHHHHHHHhhhCCcchHHHHHHHhc----CCccchhHHHHHhHHHHHHHHhhhcccccccCCCCCCCCcc
Q 005133 110 IYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCML----GAAEEATAVFSEAAALCIQKQYLQNGLATQNLYLPNEDRNL 185 (713)
Q Consensus 110 ~~~~~~~~~~A~~~y~~Al~~~p~~~~a~~~L~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (713)
++...|+..+|+..++++++.+|..-+ +..|+.+ |...++...|......
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~------------------------- 145 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR------------------------- 145 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------------
Confidence 999999999999999999999999988 7776543 5555556666543211
Q ss_pred ccCCCCCCCCCChhhhhhhhhcccCCCCCCCCCccccccccCCCCCCCCCCCCccCCCCCCccCCCCCCCCCcccCCCCC
Q 005133 186 VSSKSAGTEDISPRQLKHMQANNLRDIPGNYHGAAVSAAAASQPLNGGPSNASFYNTPSPITTQLSGVAPPPLCRNLQPN 265 (713)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (713)
.|
T Consensus 146 --------------------------------------------------------~P---------------------- 147 (765)
T PRK10049 146 --------------------------------------------------------AP---------------------- 147 (765)
T ss_pred --------------------------------------------------------CC----------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCCCccccccccCCccccccCCccccccccccCCCCCCCcccccccccCCCCCccccccCCCCCCCCccc
Q 005133 266 GPNLNMLGTDSSPKSTISSTIQAPRRKFVDEGKLRKISGRLFSDSGPRRSTRLAGEAGANANMSTTTVAGNGTTNSSKYL 345 (713)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (713)
T Consensus 148 -------------------------------------------------------------------------------- 147 (765)
T PRK10049 148 -------------------------------------------------------------------------------- 147 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCcccccccccccCCcCCCccccccCCCCCCCCccccCcCCccccCCCCCCCccccccCCccccCCCCCCcchhhhh
Q 005133 346 GGSKLSSVALRSVTLRKGQSWANENIDEGMRNEPFDDSRANTASTVSSSFPTSDTRSAVQEGTTVPIGGTAMNGSRIMTG 425 (713)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (713)
..
T Consensus 148 ------------------------------------------------------------------------------~~ 149 (765)
T PRK10049 148 ------------------------------------------------------------------------------QT 149 (765)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCC-----HHHHHHHHHHHH-----HhhcH---HHHHHHHHHH
Q 005133 426 ASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT-----GWVLSQVGKAYF-----EVVDY---LEAERAFTLA 492 (713)
Q Consensus 426 ~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~-----~~~~~~lg~~~~-----~~g~~---~eA~~~~~ka 492 (713)
....+..+..+...++.++|+..++++.. .|.. ......+...++ ..+++ ++|++.++++
T Consensus 150 ------~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 150 ------QQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred ------HHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 00112235555678999999999998876 4432 011222223332 22345 8899999999
Q ss_pred HHhCCCCHHHHHH--H-----HHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005133 493 RRASPYSLEGMDI--Y-----STVLYHLKEDMKLSYLAQELITTDRLAP-QSWCAMGNCYSLQKDHETALKNFQRAVQLN 564 (713)
Q Consensus 493 l~~~p~~~~a~~~--l-----a~~l~~~g~~~~A~~~~~kal~~~p~~~-~~~~~la~~~~~~g~~~~Al~~~~kal~~~ 564 (713)
++..|.++..... . ...+...|++++|+..|+++++..+..+ .+...+|.+|...|++++|+.+|+++++.+
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 9876555433211 1 2345677999999999999998865433 344446999999999999999999999988
Q ss_pred CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005133 565 PRF----AYGHTLCGHEYVALEDFENGIRSYQSALRVDAR---------------HYNSWYGLGMVYLRQEKFEFSEHHF 625 (713)
Q Consensus 565 p~~----~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~---------------~~~~~~~lg~~y~~~g~~~eA~~~l 625 (713)
|.. ...+..++..+...|++++|+..++++....|. ...++..+|.++...|++++|++.+
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 765 356777888899999999999999999998763 2457788999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 626 RMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 626 ~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
++++...|.+..++..+|.++...|++++|+..+++++.++|++..+++.+|.++...|++++|...++++++..|+++.
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHH
Q 005133 706 VYA 708 (713)
Q Consensus 706 ~~~ 708 (713)
+..
T Consensus 463 ~~~ 465 (765)
T PRK10049 463 VQR 465 (765)
T ss_pred HHH
Confidence 754
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-21 Score=202.81 Aligned_cols=270 Identities=16% Similarity=0.148 Sum_probs=248.8
Q ss_pred HHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 005133 438 EGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDM 517 (713)
Q Consensus 438 ~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~ 517 (713)
.|.....+.++++|+..|+.+.+.+|-...-+-....+++-..+-.+---+.+.+..++...++....+|..|...++.+
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 45556788999999999999999999877777777888888887777777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 005133 518 KLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597 (713)
Q Consensus 518 ~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~ 597 (713)
+|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+..+|+.+|..|..++.+.-|+-+|++|+..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCCh
Q 005133 598 DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA-------DKKNP 670 (713)
Q Consensus 598 ~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~-------~p~~~ 670 (713)
.|.|...|..||.||.+.++.++|+++|.+++.....+..++..+|.+|.+++++++|..+|++.++. .|.-.
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ 507 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETI 507 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999983 45556
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHH
Q 005133 671 LPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVY 707 (713)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 707 (713)
.+...|+.-+.+.+++++|..+..+++.-.+.-.++.
T Consensus 508 ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak 544 (559)
T KOG1155|consen 508 KARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAK 544 (559)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHH
Confidence 6777899999999999999999999888766555443
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.88 E-value=1.7e-22 Score=211.35 Aligned_cols=261 Identities=18% Similarity=0.176 Sum_probs=125.4
Q ss_pred HHHHHHHccCCHHHHHHHHHcCcc-c-CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 437 GEGYRMSCMYRCKDALDVYLKLPH-K-HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 437 ~~a~~l~~~g~~~eAi~~l~~~~~-~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
..|..++..|++++|++++.+... . .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 337777899999999999976544 4 488899999999999999999999999999999999988888888888 7999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN--PRFAYGHTLCGHEYVALEDFENGIRSYQ 592 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~--p~~~~a~~~lg~~~~~~g~~eeAl~~~~ 592 (713)
++++|..+++++.+..+ ++..+.....++...++++++...++++.... +.++..|..+|.++...|+.++|+.+|+
T Consensus 92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999988764 57778888889999999999999999987654 6788999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005133 593 SALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLP 672 (713)
Q Consensus 593 ~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~ 672 (713)
++++.+|++..+...++.++...|+++++.+.+....+..|.++.++..+|.++..+|++++|+.+|++++...|+++.+
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005133 673 MYQKANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~~~kal~l 699 (713)
+..+|.++...|++++|..+++++++.
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999998763
No 28
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.3e-20 Score=199.47 Aligned_cols=250 Identities=20% Similarity=0.325 Sum_probs=236.6
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 463 YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGN 542 (713)
Q Consensus 463 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~ 542 (713)
.++..++...+..++..++|.+..+.++..++.+|.+...+.....++..+|+..+...+..++++..|..+..|+.+|.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 35778899999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005133 543 CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSE 622 (713)
Q Consensus 543 ~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~ 622 (713)
.|...|++.+|.++|.++..++|....+|..+|+.+...++.|+|+.+|..|-++.|........+|.-|.+.++++.|.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------CChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 005133 623 HHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK-------KNPLPMYQKANILLSLEKFDEALEVLEE 695 (713)
Q Consensus 623 ~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p-------~~~~~~~~la~~~~~~g~~~eA~~~~~k 695 (713)
++|.+|+.+.|.++.++..+|.+.+..+.|.+|..+|+.++..-+ .....+.+||.++.+++.+++|+.+|++
T Consensus 401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999994322 2345588999999999999999999999
Q ss_pred HHHHCCCChhHHHhccC
Q 005133 696 LKEYAPRESGVYALMGC 712 (713)
Q Consensus 696 al~l~P~~~~~~~~Lg~ 712 (713)
++.+.|.++.++..+|.
T Consensus 481 aL~l~~k~~~~~asig~ 497 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGY 497 (611)
T ss_pred HHHcCCCchhHHHHHHH
Confidence 99999999998877763
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=1.7e-19 Score=206.00 Aligned_cols=248 Identities=10% Similarity=-0.000 Sum_probs=131.0
Q ss_pred CHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhh---------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 005133 447 RCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVV---------DYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDM 517 (713)
Q Consensus 447 ~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g---------~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~ 517 (713)
.+++|+.+|++++..+|+.+.++..+|.+|...+ ++++|+..++++++++|++..++..+|.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 3455555555555555555555555555544322 2455555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 005133 518 KLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597 (713)
Q Consensus 518 ~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~ 597 (713)
+|+..++++++++|+++.+++.+|.++...|++++|+..++++++++|.++.++..++.+++..|++++|+..+++++..
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555544444444444555555555555555544
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005133 598 D-ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676 (713)
Q Consensus 598 ~-p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~l 676 (713)
. |+++.++..+|.+|...|++++|+..+.++....|....++..++.+|...| ++|...+++.++.....+.-....
T Consensus 436 ~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~ 513 (553)
T PRK12370 436 HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLL 513 (553)
T ss_pred ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHH
Confidence 3 4455555555555555555555555555555555555555555555555555 244444444443322222222224
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 005133 677 ANILLSLEKFDEALEVLEELK 697 (713)
Q Consensus 677 a~~~~~~g~~~eA~~~~~kal 697 (713)
..+|.-.|+.+.|..+ +++.
T Consensus 514 ~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 514 PLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred HHHHHHHhhhHHHHHH-HHhh
Confidence 5555555555555444 4433
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=5.5e-18 Score=197.62 Aligned_cols=225 Identities=7% Similarity=-0.045 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 005133 483 LEAERAFTLARRAS---PYS----LEGMDIYSTVLYHLKEDMKLSYLAQELITTD-RLAPQSWCAMGNCYSLQKDHETAL 554 (713)
Q Consensus 483 ~eA~~~~~kal~~~---p~~----~~a~~~la~~l~~~g~~~~A~~~~~kal~~~-p~~~~~~~~la~~~~~~g~~~~Al 554 (713)
+.|+..+++++... |.. ..+..-...++...+++.+++..|+.+.... +--..+...+|..|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 34555555555533 322 2233445567778889999999999887655 334567888999999999999999
Q ss_pred HHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHH
Q 005133 555 KNFQRAVQLNP------RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA---------------RHYNSWYGLGMVYL 613 (713)
Q Consensus 555 ~~~~kal~~~p------~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p---------------~~~~~~~~lg~~y~ 613 (713)
.+|++++.-.+ ........|...|...+++++|..++++..+..| +...+...++.++.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999988653 2333456788889999999999999999988544 33467788899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 005133 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVL 693 (713)
Q Consensus 614 ~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 693 (713)
..|++.+|++.+++.+...|.++.++..+|.++...|.+.+|+..++.++.++|++..+...+|.++..+|++++|....
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCChhHH
Q 005133 694 EELKEYAPRESGVY 707 (713)
Q Consensus 694 ~kal~l~P~~~~~~ 707 (713)
+++++..|+++.+.
T Consensus 508 ~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 508 DDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhhCCCchhHH
Confidence 99999999998654
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=2.9e-19 Score=204.11 Aligned_cols=232 Identities=12% Similarity=0.059 Sum_probs=209.3
Q ss_pred CHHHHHHHHHHHHHh---hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHhCCC
Q 005133 465 TGWVLSQVGKAYFEV---VDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK---------EDMKLSYLAQELITTDRL 532 (713)
Q Consensus 465 ~~~~~~~lg~~~~~~---g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g---------~~~~A~~~~~kal~~~p~ 532 (713)
+.+.++..|..++.. +++++|+.+|+++++.+|++..++..++.++...+ ++.+|...++++++++|+
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 344566677655443 57899999999999999999999999998876543 378999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (713)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y 612 (713)
++.+|..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~ 416 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWIT 416 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877788888
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Q 005133 613 LRQEKFEFSEHHFRMAFQIS-PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALE 691 (713)
Q Consensus 613 ~~~g~~~eA~~~l~kal~~~-p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 691 (713)
+..|++++|+..+++++... |+++.++..+|.++...|++++|+..++++....|....++..++.+|...|+ +|..
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~ 494 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALP 494 (553)
T ss_pred HhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHH
Confidence 88999999999999999875 78899999999999999999999999999999899888899999999999884 7777
Q ss_pred HHHHHHH
Q 005133 692 VLEELKE 698 (713)
Q Consensus 692 ~~~kal~ 698 (713)
.++++++
T Consensus 495 ~l~~ll~ 501 (553)
T PRK12370 495 TIREFLE 501 (553)
T ss_pred HHHHHHH
Confidence 7777665
No 32
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.85 E-value=2.7e-19 Score=178.53 Aligned_cols=279 Identities=15% Similarity=0.124 Sum_probs=245.4
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 431 GLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVL 510 (713)
Q Consensus 431 ~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l 510 (713)
++-..+..|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-..|+..+.+++++-|+...+....|.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCH---HHHH------------HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 511 YHLKEDMKLSYLAQELITTDRLAP---QSWC------------AMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575 (713)
Q Consensus 511 ~~~g~~~~A~~~~~kal~~~p~~~---~~~~------------~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg 575 (713)
..+|++++|..-|..++..+|.+. ++.. .....++..|++..|+++....+++.|-++..+...+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 999999999999999999988533 2222 2334456678999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------------
Q 005133 576 HEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVI----------------- 638 (713)
Q Consensus 576 ~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~----------------- 638 (713)
.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++-..
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988889999999999999999999999998888888876221
Q ss_pred ---------------------------------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005133 639 ---------------------------------MSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK 685 (713)
Q Consensus 639 ---------------------------------~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~ 685 (713)
+..+..|+..-+++.+|+..+.+++.++|++..++...|.+|+....
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 12355667778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCChhHHHh
Q 005133 686 FDEALEVLEELKEYAPRESGVYAL 709 (713)
Q Consensus 686 ~~eA~~~~~kal~l~P~~~~~~~~ 709 (713)
|+.|+..|+++.+.++++..+...
T Consensus 357 YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHH
Confidence 999999999999999998876543
No 33
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=180.18 Aligned_cols=248 Identities=15% Similarity=0.155 Sum_probs=234.8
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNC 543 (713)
Q Consensus 464 ~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 543 (713)
.+.|....+|+||+.+|-+.+|.+.++..++..|. ++.+..++.+|....+...|+..+.+.++..|.+...+..++.+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 35566678999999999999999999999998764 77889999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005133 544 YSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEH 623 (713)
Q Consensus 544 ~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~ 623 (713)
+..++++++|+++|+.+++.+|.+.++...+|..|+..++.+-|+.+|++.+++.-.+++.+.++|.|++..++++-++.
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 624 HFRMAFQISPH---SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 624 ~l~kal~~~p~---~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
.|++|+....+ -.++|+++|.+....|++..|..+|+-++..++++.+++.+||.+..+.|+.++|..++..+....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999987543 367999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhccC
Q 005133 701 PRESGVYALMGC 712 (713)
Q Consensus 701 P~~~~~~~~Lg~ 712 (713)
|+-.+..++|+.
T Consensus 460 P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 460 PDMAEVTTNLQF 471 (478)
T ss_pred ccccccccceeE
Confidence 999998888874
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.83 E-value=3.4e-20 Score=193.96 Aligned_cols=240 Identities=18% Similarity=0.203 Sum_probs=120.4
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 005133 470 SQVGKAYFEVVDYLEAERAFTLAR-RA-SPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQ 547 (713)
Q Consensus 470 ~~lg~~~~~~g~~~eA~~~~~kal-~~-~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 547 (713)
+.+|.+++..|++++|++.+.+.+ .. .|++...|..++.+.+.+++++.|+..|++++..++..+..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 467999999999999999997655 44 488999999999999999999999999999999999988888888888 799
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005133 548 KDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD--ARHYNSWYGLGMVYLRQEKFEFSEHHF 625 (713)
Q Consensus 548 g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~--p~~~~~~~~lg~~y~~~g~~~eA~~~l 625 (713)
+++++|+++++++.+..+ ++..+..+..++...++++++...++++.... +.++.+|..+|.++.+.|++++|+..|
T Consensus 91 ~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999987664 46667778888999999999999999987655 678899999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 626 RMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 626 ~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
+++++.+|++..+...+++++...|+++++...++......|.++..+..+|.++..+|++++|+.+|+++++..|+++.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHhcc
Q 005133 706 VYALMG 711 (713)
Q Consensus 706 ~~~~Lg 711 (713)
++..+|
T Consensus 250 ~~~~~a 255 (280)
T PF13429_consen 250 WLLAYA 255 (280)
T ss_dssp HHHHHH
T ss_pred cccccc
Confidence 888776
No 35
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.6e-18 Score=180.70 Aligned_cols=246 Identities=17% Similarity=0.140 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHH-----
Q 005133 429 LLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGM----- 503 (713)
Q Consensus 429 l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~----- 503 (713)
.......-..|...+...++..|++.|..++..+ .+...+...+-+|+..|.+.+++....++++.......-+
T Consensus 221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak 299 (539)
T KOG0548|consen 221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAK 299 (539)
T ss_pred HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHH
Confidence 3334445556677778888999999999988888 7777788889999999999999988888877654432222
Q ss_pred --HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 504 --DIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL 581 (713)
Q Consensus 504 --~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~ 581 (713)
..+|..+...++++.++.+|++++..... ..+.......+++++......-++|.-...-...|..++..
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc
Confidence 22333444455566666666665554333 44555555666666666666556666655555666666667
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005133 582 EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEK 661 (713)
Q Consensus 582 g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~k 661 (713)
|+|..|+..|.+++..+|+++..|.+.|.||.++|.+..|+...+++++++|+...+|...|.++..+.+|++|++.|++
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777766666666667777777777777777777
Q ss_pred HHHhCCCChhHHHHHHHHHHHc
Q 005133 662 AILADKKNPLPMYQKANILLSL 683 (713)
Q Consensus 662 al~~~p~~~~~~~~la~~~~~~ 683 (713)
+++.+|.+.++...+..|...+
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHh
Confidence 7777666666666666666543
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=4.1e-18 Score=189.32 Aligned_cols=266 Identities=17% Similarity=0.178 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~ 511 (713)
+...|+.|..++..|++++|+.++.++++.+|..+.+|+.+|.+|.++|+.++|+.++-.|-.++|.+.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 55678888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHH
Q 005133 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA-----YGHTLCGHEYVALEDFEN 586 (713)
Q Consensus 512 ~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~-----~a~~~lg~~~~~~g~~ee 586 (713)
.+|.+.+|..+|.++++..|.+....+..+.+|.+.|++..|...|.+++...|... ......++.+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999988321 112223444555555555
Q ss_pred HHHHHHHHHHhC--------------------------------------------------------------------
Q 005133 587 GIRSYQSALRVD-------------------------------------------------------------------- 598 (713)
Q Consensus 587 Al~~~~~al~~~-------------------------------------------------------------------- 598 (713)
|++.++.++...
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 555555544310
Q ss_pred --------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 005133 599 --------------------------------ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH-SSVIMSYLGTA 645 (713)
Q Consensus 599 --------------------------------p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~-~~~~~~~la~~ 645 (713)
.++++.++.++.+|...|++.+|+.+|..+....+. +..+|+.+|.|
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 112345667778888888888888888877765443 35578888888
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 646 MHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELK 697 (713)
Q Consensus 646 ~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal 697 (713)
|..+|.+++|+++|++++...|++..+...|+.++.++|+.++|.+.++...
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8888888888888888888888888888888888888888888888777765
No 37
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=2.7e-19 Score=190.60 Aligned_cols=256 Identities=15% Similarity=0.108 Sum_probs=201.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~ 513 (713)
.-|..|..+++.|+..+|+-+|+.+++.+|.+.++|..||.+..+.++-..|+..++++++++|++.+++..||..|...
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcc
Q 005133 514 KEDMKLSYLAQELITTDRLAPQSWCAMG---------NCYSLQKDHETALKNFQRAVQLNP--RFAYGHTLCGHEYVALE 582 (713)
Q Consensus 514 g~~~~A~~~~~kal~~~p~~~~~~~~la---------~~~~~~g~~~~Al~~~~kal~~~p--~~~~a~~~lg~~~~~~g 582 (713)
|...+|..++++.+...|... |...+ .-+.....+..-.+.|-.+....| .+++++..||.+|...|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 888888888888888776432 11111 011112233444566666666677 67888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005133 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKA 662 (713)
Q Consensus 583 ~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~ka 662 (713)
+|++|+.+|+.||...|++...|+.||-.+....+.++|+..|.+|+++.|....++++||..+..+|.|++|+++|-.|
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhCCC----------ChhHHHHHHHHHHHcCCHHHHHH
Q 005133 663 ILADKK----------NPLPMYQKANILLSLEKFDEALE 691 (713)
Q Consensus 663 l~~~p~----------~~~~~~~la~~~~~~g~~~eA~~ 691 (713)
|.+.+. +..+|..|-.++..+++.+.+..
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 877543 12466666677777777664443
No 38
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=6e-18 Score=177.97 Aligned_cols=237 Identities=11% Similarity=0.013 Sum_probs=167.7
Q ss_pred cCCHHHHHHHHHcCcccCC----CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 005133 445 MYRCKDALDVYLKLPHKHY----NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLS 520 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~~----~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~ 520 (713)
.++.+.++..+.+++...+ ..+..|+.+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4667888888888775333 346678888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 005133 521 YLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600 (713)
Q Consensus 521 ~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~ 600 (713)
..++++++++|++..+|..+|.++...|++++|++.|+++++.+|+++..... ..+....+++++|+..|.+++...+.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 88888888888888888888888888888888888888888888887642221 22344567788888888776654322
Q ss_pred CHHHHHHHHHHHHHcCCHHHH--HHHHH----HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChhHH
Q 005133 601 HYNSWYGLGMVYLRQEKFEFS--EHHFR----MAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK-KNPLPM 673 (713)
Q Consensus 601 ~~~~~~~lg~~y~~~g~~~eA--~~~l~----kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p-~~~~~~ 673 (713)
. .|. .+.++...|++.++ ++.+. ...++.|...++|+++|.++...|++++|+.+|+++++.+| +.++..
T Consensus 198 ~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 198 E--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred c--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 2 121 34555555655333 22222 22345566667888888888888888888888888888875 556666
Q ss_pred HHHHHHHHHcCC
Q 005133 674 YQKANILLSLEK 685 (713)
Q Consensus 674 ~~la~~~~~~g~ 685 (713)
+.+..+....+.
T Consensus 275 ~~~~e~~~~~~~ 286 (296)
T PRK11189 275 YALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHhh
Confidence 555555544333
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=5.3e-18 Score=178.36 Aligned_cols=224 Identities=9% Similarity=0.004 Sum_probs=184.9
Q ss_pred hcHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005133 480 VDYLEAERAFTLARRASP----YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALK 555 (713)
Q Consensus 480 g~~~eA~~~~~kal~~~p----~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~ 555 (713)
+..+.++..+.+++...| .....++.+|.++...|++.+|...++++++.+|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 567888999999996444 3367799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005133 556 NFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (713)
Q Consensus 556 ~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~ 635 (713)
.|+++++++|++..+|..+|.++...|++++|+..|+++++.+|+++..... ..++...+++++|+..|.+++...+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 9999999999999999999999999999999999999999999998742222 223455678999999998877554332
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH-------HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CChhHH
Q 005133 636 SVIMSYLGTAMHALKRSGEAIEMMEKA-------ILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP-RESGVY 707 (713)
Q Consensus 636 ~~~~~~la~~~~~~g~~eeAl~~l~ka-------l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~ 707 (713)
. |. .+.++...|+..++ ..++.+ .++.|....+|+.+|.++...|++++|+.+|+++++.+| +..+..
T Consensus 199 ~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 Q--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred c--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 2 22 45666677776554 233333 356677889999999999999999999999999999997 555444
Q ss_pred H
Q 005133 708 A 708 (713)
Q Consensus 708 ~ 708 (713)
+
T Consensus 275 ~ 275 (296)
T PRK11189 275 Y 275 (296)
T ss_pred H
Confidence 4
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=1.2e-17 Score=167.70 Aligned_cols=202 Identities=17% Similarity=0.180 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCY 544 (713)
Q Consensus 465 ~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~ 544 (713)
.+..++.+|.+++..|++++|++.++++++.+|.+..++.. +|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~----------------------------------la~~~ 75 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLA----------------------------------LALYY 75 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH----------------------------------HHHHH
Confidence 45667777777777777777777777777666665554444 45555
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 005133 545 SLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD--ARHYNSWYGLGMVYLRQEKFEFSE 622 (713)
Q Consensus 545 ~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~--p~~~~~~~~lg~~y~~~g~~~eA~ 622 (713)
...|++++|++.++++++..|.+..++..+|.++...|++++|+..|++++... +.....+..+|.++...|++++|+
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555555555555555555555555555555555555555432 233445555666666666666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 623 HHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 623 ~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
..+++++...|.+..++..+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 156 KYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 666666666666666666666666666666666666666666655555666666666666666666666655555443
No 41
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=6.7e-19 Score=187.59 Aligned_cols=233 Identities=18% Similarity=0.198 Sum_probs=210.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 005133 470 SQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKD 549 (713)
Q Consensus 470 ~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 549 (713)
+..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++...|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHH
Q 005133 550 HETALKNFQRAVQLNPRFAYGHTL-------CGHEYVALEDFENGIRSYQSALRVDA--RHYNSWYGLGMVYLRQEKFEF 620 (713)
Q Consensus 550 ~~~Al~~~~kal~~~p~~~~a~~~-------lg~~~~~~g~~eeAl~~~~~al~~~p--~~~~~~~~lg~~y~~~g~~~e 620 (713)
-.+|++++.+-+...|.....-.. ...-......+..-.+.|-.+....| .+++++..||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999887754322110 00011112234556677888888888 789999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 621 SEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 621 A~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
|+.+|+.||...|++..+|..||-.+..-.+.++|+..|++|+++.|..+.++++||..++.+|.|++|..+|-.++.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 005133 701 PR 702 (713)
Q Consensus 701 P~ 702 (713)
+.
T Consensus 529 ~k 530 (579)
T KOG1125|consen 529 RK 530 (579)
T ss_pred hc
Confidence 65
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=1.6e-17 Score=166.76 Aligned_cols=197 Identities=12% Similarity=0.005 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~ 511 (713)
....+..|..+...|++++|+..+++++...|....++..+|.++...|++++|++.|+++++..|.+..++..++.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 33455667888999999999999999999999999999999999999999999999999999998887776666666666
Q ss_pred HccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 005133 512 HLKEDMKLSYLAQELITTD--RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIR 589 (713)
Q Consensus 512 ~~g~~~~A~~~~~kal~~~--p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~ 589 (713)
..|++++|...+++++... +.....+..+|.++...|++++|...+.+++..+|.+..++..+|.++...|++++|+.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655432 22333444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 590 SYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMA 628 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~ka 628 (713)
++++++...|.++..+..++.++...|+.++|..+.+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444444444444444444444444444444444444433
No 43
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.81 E-value=1.3e-16 Score=187.96 Aligned_cols=253 Identities=15% Similarity=0.040 Sum_probs=210.5
Q ss_pred HccCCHHHHHHHHHcCcccC-CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHH
Q 005133 443 SCMYRCKDALDVYLKLPHKH-YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRAS-PYSLEGMDIYSTVLYHLKEDMKLS 520 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~-~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~-p~~~~a~~~la~~l~~~g~~~~A~ 520 (713)
...|++++|+++|+++.... .-+..++..+..++...|++++|.+.+..+++.. +.+...+..+...|.+.|+.++|.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 67899999999998875543 2356788888999999999999999999998876 556777888899999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 005133 521 YLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN-PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA 599 (713)
Q Consensus 521 ~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~-p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p 599 (713)
.+|++..+ .+..+|..+...|.+.|+.++|+++|++..+.. ..+...+..+...+...|..++|..+|+.+.+..+
T Consensus 381 ~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 381 NVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 99988754 356789999999999999999999999987752 22456677788888999999999999999876432
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005133 600 --RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (713)
Q Consensus 600 --~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la 677 (713)
.+...|..+..+|.+.|++++|.+.++++- ..| +..+|..+...+...|+++.|...+++++++.|++...|..++
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~ 535 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL 535 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence 235678889999999999999999987642 233 4567888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Q 005133 678 NILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 678 ~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
.+|...|++++|.+.++.+.+..
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999887653
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.81 E-value=4.1e-17 Score=179.74 Aligned_cols=266 Identities=11% Similarity=-0.041 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL-EGMDIYSTVL 510 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~-~a~~~la~~l 510 (713)
....+.+|...+..|+++.|.+.+.++.+..|.....+...|.++..+|+++.|.+++.++.+..|+.. .+...++.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 345677888889999999999999999888888888888999999999999999999999999999875 4566679999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------------------------
Q 005133 511 YHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN-------------------------- 564 (713)
Q Consensus 511 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~-------------------------- 564 (713)
...|++++|...++++.+..|+++.++..++.++...|++++|++.+.+..+..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998888777666432
Q ss_pred ------------C----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHH
Q 005133 565 ------------P----RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSW--YGLGMVYLRQEKFEFSEHHFR 626 (713)
Q Consensus 565 ------------p----~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~--~~lg~~y~~~g~~~eA~~~l~ 626 (713)
| +++.++..++..+...|++++|+..++++++..|++.... ..........++.+.+++.++
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 2 2445556667777777888888888888888777766432 223333344567777888888
Q ss_pred HHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHH--HHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 627 MAFQISPHSS--VIMSYLGTAMHALKRSGEAIEMME--KAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 627 kal~~~p~~~--~~~~~la~~~~~~g~~eeAl~~l~--kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
++++..|+++ .++..+|+++++.|++++|.++|+ .+++..|+... +..+|.++.+.|+.++|.++|++++.
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888 777788888888888888888888 46666775444 55888888888888888888887765
No 45
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-17 Score=177.03 Aligned_cols=271 Identities=21% Similarity=0.227 Sum_probs=211.5
Q ss_pred HHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 005133 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (713)
Q Consensus 437 ~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~ 516 (713)
.+|...+..|+|+.|+.+|.+++..+|.+...|.+...+|..+|+|++|++.-.+.+++.|+-+.+|..+|..+..+|++
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 46666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH----------------------------------------------------------
Q 005133 517 MKLSYLAQELITTDRLAPQSWC---------------------------------------------------------- 538 (713)
Q Consensus 517 ~~A~~~~~kal~~~p~~~~~~~---------------------------------------------------------- 538 (713)
++|+..|.+.++.+|.+...+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 7777777777766665543332
Q ss_pred --------------------------------------------------------------HHHHHHHhcCCHHHHHHH
Q 005133 539 --------------------------------------------------------------AMGNCYSLQKDHETALKN 556 (713)
Q Consensus 539 --------------------------------------------------------------~la~~~~~~g~~~~Al~~ 556 (713)
.+|.......++..|++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 233444455567778888
Q ss_pred HHHHHHhCCCCHHHH-----------------------------------------HHHHHHHHHccCHHHHHHHHHHHH
Q 005133 557 FQRAVQLNPRFAYGH-----------------------------------------TLCGHEYVALEDFENGIRSYQSAL 595 (713)
Q Consensus 557 ~~kal~~~p~~~~a~-----------------------------------------~~lg~~~~~~g~~eeAl~~~~~al 595 (713)
|..++.++ .+...+ ..+|..|...++++.|+.+|.+++
T Consensus 247 y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 247 YAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 88888776 332222 223445666677888888888776
Q ss_pred HhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 596 RVD--------------------------ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL 649 (713)
Q Consensus 596 ~~~--------------------------p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 649 (713)
... |.-..-...-|..++..|+|..|+.+|.++++.+|+++.+|.+.|.||.++
T Consensus 326 te~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 326 TEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 532 222333445688899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHH
Q 005133 650 KRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 650 g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 708 (713)
|.+..|+..++++++++|....+|...|.++..+.+|++|++.|.++++.+|++.++.-
T Consensus 406 ~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~ 464 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAID 464 (539)
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877644
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=5.3e-17 Score=178.01 Aligned_cols=264 Identities=10% Similarity=-0.013 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH
Q 005133 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGM-DIYSTVLY 511 (713)
Q Consensus 433 l~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~-~~la~~l~ 511 (713)
...+.+|...+..|+|++|++.+.+..+..+.....+...+.+....|+++.|..+|.++.+.+|+...+. ...+.++.
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 44677888888899999999999887665444344444456666999999999999999999999885444 34488999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------------------
Q 005133 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL---------------------------- 563 (713)
Q Consensus 512 ~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~---------------------------- 563 (713)
..|++++|...++++.+..|+++.++..++.+|...|++++|++.+.+..+.
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999666655532
Q ss_pred --------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 564 --------------NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAF 629 (713)
Q Consensus 564 --------------~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal 629 (713)
.|+++.++..++..+...|+.++|...++++++. +.++.....++.+ ..++.+++++.+++.+
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~l 321 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHH
Confidence 2335556677788888999999999999999984 4455554444444 4489999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 630 QISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 630 ~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
+..|+++..+..+|.++...|++++|.++|+++++..|++ ..+..++.++.++|+.++|..+|++++.+.
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999998864 456689999999999999999999998764
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=6.8e-19 Score=174.70 Aligned_cols=255 Identities=12% Similarity=0.079 Sum_probs=237.3
Q ss_pred hHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHH
Q 005133 425 GASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMD 504 (713)
Q Consensus 425 ~~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~ 504 (713)
......++++.-..|.++++.|.+.+|.+.++..+...| .++.+..++++|....+...|+..|.+.++..|.+...+.
T Consensus 216 ~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~ 294 (478)
T KOG1129|consen 216 STGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLL 294 (478)
T ss_pred cccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhh
Confidence 344566777888889999999999999999999988776 4677889999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 005133 505 IYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDF 584 (713)
Q Consensus 505 ~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~ 584 (713)
..+.++..+++.++|.++|+.+++.+|.+.++...+|.-|+..++.+-|+.+|++++++.-..++.+.++|.|.+..+++
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005133 585 ENGIRSYQSALRVDA---RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEK 661 (713)
Q Consensus 585 eeAl~~~~~al~~~p---~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~k 661 (713)
|-++..|++++.... .-.++|+++|.+....|++..|.++|+-++..++++.+++.++|.+-.+.|+.++|..++..
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 999999999998643 34789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHH
Q 005133 662 AILADKKNPLPMYQKANIL 680 (713)
Q Consensus 662 al~~~p~~~~~~~~la~~~ 680 (713)
+-...|+-.+..++++.+-
T Consensus 455 A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 455 AKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred hhhhCccccccccceeEEe
Confidence 9999998777777766543
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=6e-16 Score=165.87 Aligned_cols=268 Identities=15% Similarity=0.034 Sum_probs=212.0
Q ss_pred HHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 005133 441 RMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLS 520 (713)
Q Consensus 441 ~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~ 520 (713)
.....|+...|..++..+.+..|++..+|+..-.+.+...+++.|..+|.++....|. ...|...+.+.+.++..++|+
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHH
Confidence 3344577777777777777777777777777777777777777777777777776554 455666777777777777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 005133 521 YLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600 (713)
Q Consensus 521 ~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~ 600 (713)
.+++++++.+|+....|..+|.++.++++.+.|.+.|...++..|..+..|..++.+-...|..-.|..+++++.-.+|+
T Consensus 672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk 751 (913)
T KOG0495|consen 672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK 751 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------HHHHHHHHHHHHHcC
Q 005133 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------------------------------SVIMSYLGTAMHALK 650 (713)
Q Consensus 601 ~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~------------------------------~~~~~~la~~~~~~g 650 (713)
+...|.....+-++.|..+.|.....+|++..|.+ +.++..+|.++....
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 77777777777777777777777777777766544 556678889999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHh
Q 005133 651 RSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYAL 709 (713)
Q Consensus 651 ~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~ 709 (713)
++++|+++|.+++..+|++.++|..+-..+...|.-++-.+.|.++....|.+...|..
T Consensus 832 k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999998877754
No 49
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.80 E-value=2.4e-16 Score=185.75 Aligned_cols=425 Identities=12% Similarity=-0.005 Sum_probs=333.3
Q ss_pred HHHHHHHHHhhccchhhHHHHHhhhhcC---CCchhHHHHHHHHhhcCCHHHHHHHHhcC------CCcchhHHHHHHHh
Q 005133 5 LTDCVQNSLRYFMYRNAIFLCERLCAEF---PSEVNLQLLATCYLQNNQAYAAYNILKGT------QMALSRYLFAVACY 75 (713)
Q Consensus 5 l~~~i~~~l~~~~~~~A~flaerl~a~~---~~~~~~~llA~~~~~~~~~~~A~~~l~~~------~~~~~~~l~A~~~~ 75 (713)
+...|..+...+.++.|+-+-+.+.... |+...+-.+..++.+.+++..|..+.... .+......+..+|.
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 5567888888999999999999987654 34456677778888999999998888754 44566677779999
Q ss_pred hcCChhHHHHhhCCCCCCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhC----CcchHHHHHH-HhcCCccch
Q 005133 76 QMDLLSEAEAALSPVNEPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSID----PLLWAAYEEL-CMLGAAEEA 150 (713)
Q Consensus 76 ~l~~~~ea~~~L~~~~~~~~~~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~----p~~~~a~~~L-~~~~~~~~~ 150 (713)
+.|++++|+.++.. +. -|+.. .+..+-..|.+.|+.++|.+.|++.++.. +..|...... +..|.....
T Consensus 170 k~g~~~~A~~lf~~---m~--~~~~~-t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 170 KCGMLIDARRLFDE---MP--ERNLA-SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred cCCCHHHHHHHHhc---CC--CCCee-eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999953 21 13333 46777779999999999999999997754 3444444433 455655556
Q ss_pred hHHHHHhHHHHHHHHhhhcccccccCCCCCCCCccccCCCCCCCCCChhhhhhhhhcccCCCCCCCCCccccccccCCCC
Q 005133 151 TAVFSEAAALCIQKQYLQNGLATQNLYLPNEDRNLVSSKSAGTEDISPRQLKHMQANNLRDIPGNYHGAAVSAAAASQPL 230 (713)
Q Consensus 151 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (713)
.+++...... +.
T Consensus 244 ~~l~~~~~~~-----------------------------------------------------g~--------------- 255 (697)
T PLN03081 244 QQLHCCVLKT-----------------------------------------------------GV--------------- 255 (697)
T ss_pred HHHHHHHHHh-----------------------------------------------------CC---------------
Confidence 6666533110 00
Q ss_pred CCCCCCCCccCCCCCCccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccCCccccccCCccccccccccCCC
Q 005133 231 NGGPSNASFYNTPSPITTQLSGVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFVDEGKLRKISGRLFSDS 310 (713)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (713)
.| + +
T Consensus 256 -----------~~------------------------d-------------------------------------~---- 259 (697)
T PLN03081 256 -----------VG------------------------D-------------------------------------T---- 259 (697)
T ss_pred -----------Cc------------------------c-------------------------------------c----
Confidence 00 0 0
Q ss_pred CCCCcccccccccCCCCCccccccCCCCCCCCcccCCCcCcccccccccccCCcCCCccccccCCCCCCCCccccCcCCc
Q 005133 311 GPRRSTRLAGEAGANANMSTTTVAGNGTTNSSKYLGGSKLSSVALRSVTLRKGQSWANENIDEGMRNEPFDDSRANTAST 390 (713)
Q Consensus 311 ~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (713)
T Consensus 260 -------------------------------------------------------------------------------- 259 (697)
T PLN03081 260 -------------------------------------------------------------------------------- 259 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCccccccCCccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHH
Q 005133 391 VSSSFPTSDTRSAVQEGTTVPIGGTAMNGSRIMTGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLS 470 (713)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~ 470 (713)
. ++..+. ..+.+.|++++|.++|+++.. .+..+|.
T Consensus 260 ---------------------------------~-------~~n~Li--~~y~k~g~~~~A~~vf~~m~~---~~~vt~n 294 (697)
T PLN03081 260 ---------------------------------F-------VSCALI--DMYSKCGDIEDARCVFDGMPE---KTTVAWN 294 (697)
T ss_pred ---------------------------------e-------eHHHHH--HHHHHCCCHHHHHHHHHhCCC---CChhHHH
Confidence 0 011122 223568999999999998864 3667899
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Q 005133 471 QVGKAYFEVVDYLEAERAFTLARRAS-PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTD-RLAPQSWCAMGNCYSLQK 548 (713)
Q Consensus 471 ~lg~~~~~~g~~~eA~~~~~kal~~~-p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~-p~~~~~~~~la~~~~~~g 548 (713)
.+...|...|++++|+++|+++.+.. .-+...+..+..++...|+.++|..++..+++.. +.+..++..+...|.+.|
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC
Confidence 99999999999999999999998754 2346678888999999999999999999999876 556788999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 549 DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV--DARHYNSWYGLGMVYLRQEKFEFSEHHFR 626 (713)
Q Consensus 549 ~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~--~p~~~~~~~~lg~~y~~~g~~~eA~~~l~ 626 (713)
++++|.++|++..+ .+...|..+...|...|+.++|+++|+++.+. .| +..++..+...+...|+.++|.++|+
T Consensus 375 ~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 375 RMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999998754 35678999999999999999999999998875 34 47778889999999999999999999
Q ss_pred HHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Q 005133 627 MAFQISP--HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (713)
Q Consensus 627 kal~~~p--~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~ 704 (713)
...+..+ .+...|..+..+|.+.|++++|.+.++++- ..| +..+|..+...+...|+++.|...+++++++.|++.
T Consensus 451 ~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 9986433 234578889999999999999999987642 233 567799999999999999999999999999999887
Q ss_pred hHHHhc
Q 005133 705 GVYALM 710 (713)
Q Consensus 705 ~~~~~L 710 (713)
..|..|
T Consensus 529 ~~y~~L 534 (697)
T PLN03081 529 NNYVVL 534 (697)
T ss_pred cchHHH
Confidence 666554
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.2e-17 Score=171.68 Aligned_cols=273 Identities=13% Similarity=0.101 Sum_probs=243.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCC-CHHHHHHHHHHHHHh--hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYN-TGWVLSQVGKAYFEV--VDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~-~~~~~~~lg~~~~~~--g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~ 511 (713)
.+.++..++++|+++.|++++.-..+.+.. ...+-..+..+++.+ .++..|-.+...++.++..++.++...|.+.+
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 457888899999999999999876555433 223344555555554 58899999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 005133 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSY 591 (713)
Q Consensus 512 ~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~ 591 (713)
..|++++|...|.+++..+....++++.+|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|..+.+..+|++++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888888999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 005133 592 QSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPL 671 (713)
Q Consensus 592 ~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~ 671 (713)
-++..+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+...+||..|....-+++|+.+|+++.-+.|....
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHH
Q 005133 672 PMYQKANILLSLEKFDEALEVLEELKEYAPRESGVY 707 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 707 (713)
.....+.|+.+.|+|++|.+.|+..-+..|.+.+.+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 888999999999999999999999999999887654
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=6.4e-17 Score=178.22 Aligned_cols=226 Identities=12% Similarity=-0.036 Sum_probs=157.2
Q ss_pred HHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcc
Q 005133 439 GYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMD----IYSTVLYHLK 514 (713)
Q Consensus 439 a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~----~la~~l~~~g 514 (713)
+..++..|++++|+..++.+.+..|+++.++..++.++...|+|++|++.+.+..+........+. ....-+...+
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555555555555555555555555555544332222111 1111111222
Q ss_pred CHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHccCHHHHH
Q 005133 515 EDMKLSYLAQELITTDR----LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGH--TLCGHEYVALEDFENGI 588 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p----~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~--~~lg~~~~~~g~~eeAl 588 (713)
..++....+.++.+..| +++..+..++..+...|++++|++.++++++..|++.... ..........++.+.++
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 22222334444445455 4788899999999999999999999999999999887532 33334445568899999
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005133 589 RSYQSALRVDARHY--NSWYGLGMVYLRQEKFEFSEHHFR--MAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAIL 664 (713)
Q Consensus 589 ~~~~~al~~~p~~~--~~~~~lg~~y~~~g~~~eA~~~l~--kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~ 664 (713)
+.++++++..|+++ .....+|.++++.|+|++|.++|+ .+++..|+... +..+|.++.+.|+.++|.++|++++.
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 889999999999999999999999 57778887665 55999999999999999999999876
Q ss_pred h
Q 005133 665 A 665 (713)
Q Consensus 665 ~ 665 (713)
.
T Consensus 399 ~ 399 (409)
T TIGR00540 399 L 399 (409)
T ss_pred H
Confidence 4
No 52
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=3.3e-17 Score=156.72 Aligned_cols=205 Identities=13% Similarity=0.091 Sum_probs=168.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 005133 504 DIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALED 583 (713)
Q Consensus 504 ~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~ 583 (713)
..+|.-|...|++..|...++++++.+|....+|..++.+|...|+.+.|.+.|++|+.++|++.+++.+.|..+..+|+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 33444444444444444444555555556677888888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005133 584 FENGIRSYQSALRV--DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEK 661 (713)
Q Consensus 584 ~eeAl~~~~~al~~--~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~k 661 (713)
+++|...|++|+.. .+..+..+.++|.|..++|+++.|.++|+++++.+|+.+.....++..+++.|+|-.|..++++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 99999999998874 3456778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHH
Q 005133 662 AILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 662 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 708 (713)
.....+-....+.....+....|+-+.|-++=.+..+..|...+...
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 88888878888888888889999999998888888889998766543
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.3e-15 Score=177.94 Aligned_cols=200 Identities=12% Similarity=0.071 Sum_probs=147.9
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHh
Q 005133 474 KAYFEVVDYLEAERAFTLARRAS-PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDR------LAPQSWCAMGNCYSL 546 (713)
Q Consensus 474 ~~~~~~g~~~eA~~~~~kal~~~-p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p------~~~~~~~~la~~~~~ 546 (713)
.++...|++.++++.|+.+.... +--.-+....|..|...++.++|..+|++++...+ ........+...|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 34455566667777666665443 22233555566666666677777777766665442 122334556667777
Q ss_pred cCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 547 QKDHETALKNFQRAVQLNP---------------RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMV 611 (713)
Q Consensus 547 ~g~~~~Al~~~~kal~~~p---------------~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~ 611 (713)
.+++++|..++++..+..| +...+...++.++...|++.+|++.+++.+...|.+..++..+|.+
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v 459 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASI 459 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777776433 3345677788888888899999999998888889888888888999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005133 612 YLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (713)
Q Consensus 612 y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~ 673 (713)
+...|.+.+|+..++.++.++|++..+...+|.++..++++++|....+++++..|+++.+.
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 98899999999888888888888888888888888888999999888888888888887554
No 54
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.79 E-value=3.5e-15 Score=178.84 Aligned_cols=255 Identities=13% Similarity=0.025 Sum_probs=163.2
Q ss_pred HccCCHHHHHHHHHcCcccC-CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHH
Q 005133 443 SCMYRCKDALDVYLKLPHKH-YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA----SPYSLEGMDIYSTVLYHLKEDM 517 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~-~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~----~p~~~~a~~~la~~l~~~g~~~ 517 (713)
.+.|++++|+.+|..+.... .-+..+|..+...|.+.|++++|.+.|+++... .| +...+..+..+|...|+.+
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHH
Confidence 45667777777776664332 124556667777777777777777777776652 23 2445666666677777777
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 518 KLSYLAQELITTD-RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL--NPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (713)
Q Consensus 518 ~A~~~~~kal~~~-p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~--~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a 594 (713)
+|..+++++.+.. +.+...|..+...|.+.|++++|+++|+++.+. .| +...|..+...|...|++++|.++++++
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7777777766654 345566777777777777777777777776654 23 3456666666777777777777777776
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChh
Q 005133 595 LRVD-ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS-PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD-KKNPL 671 (713)
Q Consensus 595 l~~~-p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~-p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~-p~~~~ 671 (713)
.+.. +.+...|..+...|.+.|++++|+++|+++.+.. ..+...|..+...|.+.|++++|+++|+++.... .-+..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 6643 2345667777777777777777777777665431 2245566667777777777777777777665442 12455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005133 672 PMYQKANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~~~kal~l 699 (713)
.|..+...+.+.|++++|..++.++++.
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 5666666777777777777777776653
No 55
>PLN03077 Protein ECB2; Provisional
Probab=99.78 E-value=9.3e-16 Score=185.02 Aligned_cols=248 Identities=13% Similarity=0.037 Sum_probs=181.1
Q ss_pred HHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHH----------------
Q 005133 442 MSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDI---------------- 505 (713)
Q Consensus 442 l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~---------------- 505 (713)
+.+.|++++|.++|+++.+. +...|..+...|...|++++|+..|++++...+-+...+..
T Consensus 434 y~k~g~~~~A~~vf~~m~~~---d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPEK---DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHcCCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 36789999999999998654 44678889999999999999999999998643333333322
Q ss_pred -------------------HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--C
Q 005133 506 -------------------YSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL--N 564 (713)
Q Consensus 506 -------------------la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~--~ 564 (713)
+...|.+.|+.++|...++.. +.+..+|..+...|...|+.++|+++|++..+. .
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 234556666777776666654 456677888888888888888888888877764 3
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 565 PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA--RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYL 642 (713)
Q Consensus 565 p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p--~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 642 (713)
|+ ...+..+...+...|++++|..+|+.+.+..+ -+...|..+..+|.+.|++++|.+.+++. ...|+ ..+|..+
T Consensus 587 Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aL 663 (857)
T PLN03077 587 PD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGAL 663 (857)
T ss_pred CC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHH
Confidence 33 34455555667778888888888888774321 23567778888888888888888888774 23443 5566666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005133 643 GTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 643 a~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 699 (713)
-..+...|+.+.|....+++++++|++...|..++.+|...|++++|.+..+.+.+.
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 667777788888888888888888888888888888888888888888888777654
No 56
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.3e-18 Score=172.60 Aligned_cols=269 Identities=17% Similarity=0.117 Sum_probs=240.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~ 513 (713)
.....|..++.+.+|.+|+..|..+++..|+++..|...+.+++..|+|++|.-..++.++++|.........+.|+..+
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 45567778889999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCHHHHHHHHHHHH---------Hh---C------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 514 KEDMKLSYLAQELI---------TT---D------RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575 (713)
Q Consensus 514 g~~~~A~~~~~kal---------~~---~------p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg 575 (713)
++..+|...++..- .. . |....+-...+.|+...+++++|...--..+++++.+.++++..|
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg 210 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRG 210 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcc
Confidence 88777775543111 11 1 222345556789999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHH
Q 005133 576 HEYVALEDFENGIRSYQSALRVDARHYN------------SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS----VIM 639 (713)
Q Consensus 576 ~~~~~~g~~eeAl~~~~~al~~~p~~~~------------~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~----~~~ 639 (713)
.+++..++.+.|+..|++++.++|++.. .+..-|.-.++.|+|.+|.++|..+|.++|++. ..|
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred cccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH
Confidence 9999999999999999999999998643 466778889999999999999999999999874 478
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 640 SYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 640 ~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
.+.|.+..++|+.++|+..++.++.+++....++...|.|+..+++|++|++.|+++++...+
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 899999999999999999999999999999999999999999999999999999999998765
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=7.7e-17 Score=165.73 Aligned_cols=241 Identities=14% Similarity=-0.006 Sum_probs=231.8
Q ss_pred cCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 005133 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQ 524 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~ 524 (713)
-.++.+|..+.+.++..+..++.++...|.+.+..|++++|.+.|++++..+....++++.+|..+..+|+.++|+.+|-
T Consensus 469 gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 469 GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL 548 (840)
T ss_pred ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 005133 525 ELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNS 604 (713)
Q Consensus 525 kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~ 604 (713)
++..+--++.++++.++.+|..+.+..+|++++.++..+-|.++.++..+|.+|-+.|+-.+|.+++-...+..|.+.+.
T Consensus 549 klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ 628 (840)
T KOG2003|consen 549 KLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET 628 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005133 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE 684 (713)
Q Consensus 605 ~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g 684 (713)
.-.||..|+...-+++|+.+|+++--+.|+.......++.|+.+.|+|++|.+.|+..-...|++..++..|.++.-.+|
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999988877
Q ss_pred C
Q 005133 685 K 685 (713)
Q Consensus 685 ~ 685 (713)
-
T Consensus 709 l 709 (840)
T KOG2003|consen 709 L 709 (840)
T ss_pred c
Confidence 4
No 58
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=1.6e-16 Score=167.19 Aligned_cols=227 Identities=14% Similarity=0.072 Sum_probs=139.7
Q ss_pred hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH--HHHHHH
Q 005133 480 VDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK-EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDH--ETALKN 556 (713)
Q Consensus 480 g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g-~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~--~~Al~~ 556 (713)
+++++|+..+.++++++|.+..+|...+.++..++ .+++++..++++++.+|++..+|...+.++...++. ++++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 44555555666666666666666666666655555 345566666666666666666666666655555542 455666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHH
Q 005133 557 FQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ---EKF----EFSEHHFRMAF 629 (713)
Q Consensus 557 ~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~---g~~----~eA~~~l~kal 629 (713)
+.++++.+|.+..+|...+.++...|++++|++++.++++.+|.+..+|+.++.++... |.+ ++++.+..+++
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666665544 222 35566666666
Q ss_pred HhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC------------------CHH
Q 005133 630 QISPHSSVIMSYLGTAMHA----LKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE------------------KFD 687 (713)
Q Consensus 630 ~~~p~~~~~~~~la~~~~~----~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g------------------~~~ 687 (713)
..+|++..+|..++.++.. +++..+|+..+.+++...|.++.++..|+.+|.... ..+
T Consensus 211 ~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PLN02789 211 LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDST 290 (320)
T ss_pred HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHH
Confidence 6666666666666666665 344556666666666666666666666666665422 346
Q ss_pred HHHHHHHHHHHHCCCChhH
Q 005133 688 EALEVLEELKEYAPRESGV 706 (713)
Q Consensus 688 eA~~~~~kal~l~P~~~~~ 706 (713)
+|...+..+-+.+|--...
T Consensus 291 ~a~~~~~~l~~~d~ir~~y 309 (320)
T PLN02789 291 LAQAVCSELEVADPMRRNY 309 (320)
T ss_pred HHHHHHHHHHhhCcHHHHH
Confidence 7888888776666644333
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-15 Score=167.67 Aligned_cols=271 Identities=12% Similarity=0.027 Sum_probs=219.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCccc-CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHK-HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~ 513 (713)
.|..++.+..+++.+.|.+...++++. ..+.+.+|..++.++-..+++.+|+...+.+++..|++...+.....+-...
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 344555566677788888888888777 5567788888888888888888888888888888888877777777777778
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHH---------HHHHHHHhcCCHHHHHHHHHHHHHh---------------------
Q 005133 514 KEDMKLSYLAQELITTDRLAPQSWC---------AMGNCYSLQKDHETALKNFQRAVQL--------------------- 563 (713)
Q Consensus 514 g~~~~A~~~~~kal~~~p~~~~~~~---------~la~~~~~~g~~~~Al~~~~kal~~--------------------- 563 (713)
++.+++.......+......+.+-. ..+.......+..+|++.++++..+
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 8888888777766665443222221 2222233334555555555554432
Q ss_pred CCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005133 564 NPRF-----AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVI 638 (713)
Q Consensus 564 ~p~~-----~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~ 638 (713)
.|.. ...|...+..+...+..++|..++.++-.++|..+..|+..|.++...|++++|.+.|..|+.++|+++..
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s 720 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS 720 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence 1111 24577889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHH--HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 639 MSYLGTAMHALKRSGEAIE--MMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 639 ~~~la~~~~~~g~~eeAl~--~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
...+|.++.+.|+..-|.. ++..+++++|.++++|+.+|.++..+|+.++|.++|.-++++.+.+|.
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999998888877 999999999999999999999999999999999999999999988774
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=2.2e-16 Score=151.10 Aligned_cols=208 Identities=12% Similarity=0.018 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 545 (713)
..+...+|.-|+..|++..|.+.++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005133 546 LQKDHETALKNFQRAVQL--NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEH 623 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~--~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~ 623 (713)
.+|++++|...|++|+.. .+.....|.++|.|..+.|+++.|..+|+++++++|+.+.....++..+++.|+|-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999999874 445578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005133 624 HFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (713)
Q Consensus 624 ~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~ 673 (713)
++++.....+-....+.....+-...|+-+.|-++=.+.....|...+..
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 99998888887888887778888888999999888888888888766543
No 61
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.76 E-value=2.4e-14 Score=171.72 Aligned_cols=223 Identities=9% Similarity=0.007 Sum_probs=190.2
Q ss_pred HccCCHHHHHHHHHcCccc---CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHH
Q 005133 443 SCMYRCKDALDVYLKLPHK---HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRAS-PYSLEGMDIYSTVLYHLKEDMK 518 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~-p~~~~a~~~la~~l~~~g~~~~ 518 (713)
.+.|++++|.++|.++... -..+..+|..+..+|.+.|++++|++.|+.+.+.+ +.+...|..+...|.+.|+.++
T Consensus 553 ~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~de 632 (1060)
T PLN03218 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Confidence 5679999999999988642 12246788889999999999999999999999886 4567888999999999999999
Q ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 519 LSYLAQELITTD-RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN-PRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (713)
Q Consensus 519 A~~~~~kal~~~-p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~-p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~ 596 (713)
|..+++++.+.. .-+..+|..+...|...|++++|.++++++.+.. +.+...|..+...|.+.|++++|+.+|+++..
T Consensus 633 Al~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999998763 2246788899999999999999999999998864 34678899999999999999999999999876
Q ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005133 597 V--DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS-PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (713)
Q Consensus 597 ~--~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~-p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~ 666 (713)
. .| +...|..+...|.+.|++++|+++|+++.... ..+...|..+...+.+.|++++|.+++.++++..
T Consensus 713 ~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 713 IKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred cCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 4 34 47889999999999999999999999987653 2356677778899999999999999999998764
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2e-15 Score=154.48 Aligned_cols=212 Identities=17% Similarity=0.075 Sum_probs=191.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
+|-.+..++..++|..|+.+-+++++.++.+..++...|.++..+|+.++|+-.|+.+..+.|.+.+.|..+..+|...|
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 34445555678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH-HH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWCAMG-NC-YSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQ 592 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~~la-~~-~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~ 592 (713)
+..+|......++...|.++.++..+| .+ +..-.--++|.+++++++++.|....+...++.++...|.++.++.+++
T Consensus 383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999999999999999999999999886 33 4444556899999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 593 SALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (713)
Q Consensus 593 ~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 647 (713)
+.+...|+ ...+..||.++...+.+++|+.+|..|+.++|++...+..+-.+--
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 99998887 5778899999999999999999999999999999887766654433
No 63
>PLN03077 Protein ECB2; Provisional
Probab=99.75 E-value=3.8e-15 Score=179.74 Aligned_cols=217 Identities=9% Similarity=-0.021 Sum_probs=179.2
Q ss_pred HccCCHHHHHHHHHcCcccC-CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 005133 443 SCMYRCKDALDVYLKLPHKH-YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSY 521 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~-~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~ 521 (713)
...|..+.+.+++..+++.. ..+..++..+...|.+.|++++|.+.|+.. +.+...|..+...|...|+.++|..
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 34566666666666554432 223445566778899999999999999886 5678889999999999999999999
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 005133 522 LAQELITTD--RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNP--RFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597 (713)
Q Consensus 522 ~~~kal~~~--p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p--~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~ 597 (713)
++++..+.. |+ ..++..+...+...|.+++|.++|+...+..+ .+...|..+...+.+.|++++|.+.+++. ..
T Consensus 576 lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~ 653 (857)
T PLN03077 576 LFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PI 653 (857)
T ss_pred HHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CC
Confidence 999988753 43 45666777789999999999999999985422 24578899999999999999999999986 34
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005133 598 DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (713)
Q Consensus 598 ~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~ 666 (713)
.|+ ..+|..|...+...|+.+.|....++++++.|++...+..++.+|...|++++|.+..+...+..
T Consensus 654 ~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 654 TPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 555 77888888888999999999999999999999999999999999999999999999998887653
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.8e-15 Score=150.89 Aligned_cols=280 Identities=16% Similarity=0.148 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC-----HHHH
Q 005133 429 LLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS-----LEGM 503 (713)
Q Consensus 429 l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~-----~~a~ 503 (713)
...+-+.+-+|..++-..+.++|++.|.++++.+|...++.+.+|..|...|..+.|+..-+..++. |+. .-+.
T Consensus 32 a~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl 110 (389)
T COG2956 32 ANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLAL 110 (389)
T ss_pred HhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3345667788888888999999999999999999999999999999999999999999998887765 432 4577
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 005133 504 DIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF-----AYGHTLCGHEY 578 (713)
Q Consensus 504 ~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~-----~~a~~~lg~~~ 578 (713)
..+|.-|...|-++.|..+|..+.+.......+.-.+..+|....+|++|++..++..++.++. +..|..++..+
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 8899999999999999999999998777778899999999999999999999999999998765 45678899999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 005133 579 VALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS-SVIMSYLGTAMHALKRSGEAIE 657 (713)
Q Consensus 579 ~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~-~~~~~~la~~~~~~g~~eeAl~ 657 (713)
....+.+.|+..+.++++.+|.+..+-..+|.++...|+|+.|++.++.+++.+|+. +.+...|..+|..+|+.++.+.
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 4588889999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhc
Q 005133 658 MMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALM 710 (713)
Q Consensus 658 ~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~L 710 (713)
++.++.+..+ .+.+...++..-....-.+.|..++.+-+...|+--..+-++
T Consensus 271 fL~~~~~~~~-g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~ 322 (389)
T COG2956 271 FLRRAMETNT-GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLM 322 (389)
T ss_pred HHHHHHHccC-CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence 9999999877 455666677777777778899999999999999765555443
No 65
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=1.5e-15 Score=162.96 Aligned_cols=273 Identities=13% Similarity=0.070 Sum_probs=258.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
++..+..+...+.++-|+.+|..+++..|..-.+|...+..--.-|..++-..+|++++...|.....|..++...+..|
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 56677778888999999999999999999998999888888888899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a 594 (713)
+...|..++..+++..|++.++|+....+.....+++.|..+|.++....| ...+|+.-+.+...++..++|+++++++
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~ 677 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEA 677 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988665 4678888899999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005133 595 LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (713)
Q Consensus 595 l~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~ 674 (713)
++..|+....|..+|.++..+++.+.|.+.|...++..|....+|..++.+-.+.|..-.|...++++.-.+|++...|.
T Consensus 678 lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwl 757 (913)
T KOG0495|consen 678 LKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWL 757 (913)
T ss_pred HHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHH
Q 005133 675 QKANILLSLEKFDEALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 675 ~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 708 (713)
....+-.+.|+.+.|.....++++-.|.+...|.
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence 9999999999999999999999999999876663
No 66
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.75 E-value=3.3e-16 Score=174.67 Aligned_cols=137 Identities=19% Similarity=0.162 Sum_probs=97.5
Q ss_pred HhhccchhhHHHHHhhhhcCCCchhHHHHHHHHhhcCCHHHHHHHHhcCCCcchhHHHHHHHhhcCChhHHHHhhCCCCC
Q 005133 13 LRYFMYRNAIFLCERLCAEFPSEVNLQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSEAEAALSPVNE 92 (713)
Q Consensus 13 l~~~~~~~A~flaerl~a~~~~~~~~~llA~~~~~~~~~~~A~~~l~~~~~~~~~~l~A~~~~~l~~~~ea~~~L~~~~~ 92 (713)
+....|.+|..++..++..+-+++++.-+-.|+.+.+.-..=...+. -.....|..|..|.+-. -..|...|..
T Consensus 410 ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~--~~e~~~~w~a~~~~rK~-~~~al~ali~--- 483 (1238)
T KOG1127|consen 410 IEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLL--ECENSEFWVALGCMRKN-SALALHALIR--- 483 (1238)
T ss_pred HHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHH--HHHHHHHHHHHHHhhhh-HHHHHHHHHH---
Confidence 45778999999999999999888999999999998332221111111 12345556666665433 4555555431
Q ss_pred CCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcchHHHHHHHhcCCccc-hhHHHH
Q 005133 93 PSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCMLGAAEE-ATAVFS 155 (713)
Q Consensus 93 ~~~~~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~~~a~~~L~~~~~~~~-~~~~f~ 155 (713)
-.+-.|.-|.++..||.+|+.-.+...|..||.+|.++||...+|+..+.++-+... -+..|.
T Consensus 484 alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 484 ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHH
Confidence 112345568899999999999999999999999999999999999999988755543 333443
No 67
>PLN02789 farnesyltranstransferase
Probab=99.74 E-value=1.3e-15 Score=160.33 Aligned_cols=232 Identities=11% Similarity=-0.020 Sum_probs=206.6
Q ss_pred HccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--HHH
Q 005133 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVV-DYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED--MKL 519 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g-~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~--~~A 519 (713)
...+++++|+..+.+++...|.+..+|...|.++..+| ++++++.++.++++.+|.+..+|...+.++..+++. .++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 45789999999999999999999999999999999998 689999999999999999999999999999999874 678
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCH----HHHHHHHH
Q 005133 520 SYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL---EDF----ENGIRSYQ 592 (713)
Q Consensus 520 ~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~---g~~----eeAl~~~~ 592 (713)
+.+++++++.+|.+..+|...+.++...|++++|++++.++++.+|.+..+|..++.++... |.+ ++++.+..
T Consensus 128 l~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 128 LEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988765 333 57899999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------------
Q 005133 593 SALRVDARHYNSWYGLGMVYLR----QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK------------------ 650 (713)
Q Consensus 593 ~al~~~p~~~~~~~~lg~~y~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g------------------ 650 (713)
+++..+|++..+|+.++.++.. .++..+|+..+.+++...|.++.++..|+.+|....
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 9999999999999999999988 456778999999999999999999999999998643
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHH
Q 005133 651 RSGEAIEMMEKAILADKKNPLPMY 674 (713)
Q Consensus 651 ~~eeAl~~l~kal~~~p~~~~~~~ 674 (713)
..++|..+|+..-+.+|--...|.
T Consensus 288 ~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 288 DSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred cHHHHHHHHHHHHhhCcHHHHHHH
Confidence 236788888877666664444443
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=8.5e-16 Score=168.42 Aligned_cols=240 Identities=18% Similarity=0.166 Sum_probs=204.3
Q ss_pred cccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 005133 459 PHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA--------SPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTD 530 (713)
Q Consensus 459 ~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~--------~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~ 530 (713)
-...|....+...+|..|..+|+|++|+..|+.++++ .|.-......+|.+|..++++.+|+.+|++++.+.
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4456777788888999999999999999999999998 55555566679999999999999999999999753
Q ss_pred --------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 531 --------RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN--------PRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (713)
Q Consensus 531 --------p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~--------p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a 594 (713)
|....++..+|..|...|++++|..++++|+++. |.-...+..++.++...+++++|+.+++++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3344688999999999999999999999999872 233456788999999999999999999999
Q ss_pred HHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHH
Q 005133 595 LRVD--------ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS--------PHSSVIMSYLGTAMHALKRSGEAIEM 658 (713)
Q Consensus 595 l~~~--------p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~--------p~~~~~~~~la~~~~~~g~~eeAl~~ 658 (713)
+++. +.-+..+.+||.+|..+|+|++|.++|++|+++. +.....+..+|..|.+++++++|.+.
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 8862 2335678999999999999999999999999874 22345788999999999999999999
Q ss_pred HHHHHHh----CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 659 MEKAILA----DKK---NPLPMYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 659 l~kal~~----~p~---~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
|.++..+ .|+ -...+.+|+.+|..+|++++|+++.++++.
T Consensus 432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9998865 333 445688999999999999999999999885
No 69
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.5e-15 Score=169.14 Aligned_cols=245 Identities=14% Similarity=0.127 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 005133 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSL 546 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 546 (713)
..++..|...+..|++++|.+.+.++++++|.+..+|..+|.++...|+.+++...+-.+.-++|.+.+.|..++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 44567778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHH
Q 005133 547 QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-----YNSWYGLGMVYLRQEKFEFS 621 (713)
Q Consensus 547 ~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~-----~~~~~~lg~~y~~~g~~~eA 621 (713)
+|.+++|+-+|.+|++.+|.+....+..+.+|.+.|+...|+..|.+++...|.. .......+..+...++-+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999831 11122234444444444555
Q ss_pred HHHHHHHHHhC--------------------------------------C------------------------------
Q 005133 622 EHHFRMAFQIS--------------------------------------P------------------------------ 633 (713)
Q Consensus 622 ~~~l~kal~~~--------------------------------------p------------------------------ 633 (713)
++.++.++... +
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 55544444310 0
Q ss_pred --------------------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHH
Q 005133 634 --------------------------------HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK-NPLPMYQKANIL 680 (713)
Q Consensus 634 --------------------------------~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~-~~~~~~~la~~~ 680 (713)
++++.+..++.+|...|++.+|+.+|..+....+. +..+|+.+|.||
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 11345678999999999999999999998877653 467899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 681 LSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 681 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
..+|.+++|+++|++++.+.|++.++...|+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La 490 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNLDARITLA 490 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence 9999999999999999999999988877664
No 70
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.70 E-value=3.9e-15 Score=149.01 Aligned_cols=242 Identities=13% Similarity=0.094 Sum_probs=209.7
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNC 543 (713)
Q Consensus 464 ~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 543 (713)
.+..-.+.+|..++..|++..|+..|..+++.+|++..+++..+.+|..+|+..-|+.-+.+++++.|+...+....|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCH---HHH------------HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 544 YSLQKDHETALKNFQRAVQLNPRFA---YGH------------TLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGL 608 (713)
Q Consensus 544 ~~~~g~~~~Al~~~~kal~~~p~~~---~a~------------~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~l 608 (713)
+.++|++++|..-|+.++..+|... +++ ......+...|++..|+.+....+++.|-++..+...
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 9999999999999999999998543 222 2223345667999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH------------H
Q 005133 609 GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQ------------K 676 (713)
Q Consensus 609 g~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~------------l 676 (713)
+.||...|+...|+.-+..+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-. -
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987554311 1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 677 ANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 677 a~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
+.-....++|.++++..+++++.+|..+.
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 22344556666666666666666665443
No 71
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=5.2e-14 Score=154.45 Aligned_cols=236 Identities=7% Similarity=0.059 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHH
Q 005133 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQS-WCAMGNCYS 545 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~-~~~la~~~~ 545 (713)
.-.+..|...+..|+|++|.+.+.+..+..+.....+...+.+....|+++.|..++.++.+.+|+.... ....+.++.
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3456778888889999999988888766544333334444566699999999999999999999987543 345599999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------------------
Q 005133 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV---------------------------- 597 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~---------------------------- 597 (713)
..|++++|+..++++.+..|+++.++..++.+|...|++++|+..+.+..+.
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999666655432
Q ss_pred --------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005133 598 --------------DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 598 --------------~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal 663 (713)
.|+++.+...++..+...|+.++|.+.++++++. +.++.+....+.+ ..++.+++++.+++.+
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~l 321 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHH
Confidence 2346677788899999999999999999999994 5566555444444 4499999999999999
Q ss_pred HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 664 LADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 664 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
+..|+++..+..+|.++...|++++|.++|+++++..|++..
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 999999999999999999999999999999999999998765
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=3.4e-14 Score=141.81 Aligned_cols=234 Identities=14% Similarity=0.076 Sum_probs=211.2
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 005133 470 SQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA-----PQSWCAMGNCY 544 (713)
Q Consensus 470 ~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~-----~~~~~~la~~~ 544 (713)
|..|.-+.-..+.++|++.|..+++.+|...++...+|.++...|..++|+.+-+.+++. |+. ..+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence 456777778899999999999999999999999999999999999999999987666654 432 25788999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHH
Q 005133 545 SLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-----YNSWYGLGMVYLRQEKFE 619 (713)
Q Consensus 545 ~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~-----~~~~~~lg~~y~~~g~~~ 619 (713)
+..|-++.|...|........--..+.-.+..+|....+|++|++.-++..++.+.. +..|..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999887655567888999999999999999999999999998875 456888999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 620 FSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN-PLPMYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 620 eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
.|+..+.+|++.+|+...+-..+|.++...|+|+.|++.++.+++.+|+. +++...|..||.++|+.++.+..+.++.+
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999975 57888999999999999999999999999
Q ss_pred HCCCCh
Q 005133 699 YAPRES 704 (713)
Q Consensus 699 l~P~~~ 704 (713)
..++..
T Consensus 278 ~~~g~~ 283 (389)
T COG2956 278 TNTGAD 283 (389)
T ss_pred ccCCcc
Confidence 887643
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.64 E-value=9e-14 Score=152.75 Aligned_cols=278 Identities=15% Similarity=0.072 Sum_probs=227.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCccc-----CCCCHHHHHHHHHHHHHh-----------hcHHHHHHHHHHHHHhCCC
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHK-----HYNTGWVLSQVGKAYFEV-----------VDYLEAERAFTLARRASPY 498 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~-----~~~~~~~~~~lg~~~~~~-----------g~~~eA~~~~~kal~~~p~ 498 (713)
.+....+.-..+.+++++++..+++.. ..-.+.++..+|.+|-.+ ....+++..++++++.+|.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344445556677888888888887652 233566778888887543 3467889999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 499 SLEGMDIYSTVLYHLKEDMKLSYLAQELITT-DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHE 577 (713)
Q Consensus 499 ~~~a~~~la~~l~~~g~~~~A~~~~~kal~~-~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~ 577 (713)
++.+.+.++.-|...++...|.....++++. ..+++.+|..++.++...+++.+|+.+.+-++...+++........++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 9999999999999999999999999999999 556788999999999999999999999999998888765555555555
Q ss_pred HHHccCHHHHHHHHHHHHHh------------------------------------------------------------
Q 005133 578 YVALEDFENGIRSYQSALRV------------------------------------------------------------ 597 (713)
Q Consensus 578 ~~~~g~~eeAl~~~~~al~~------------------------------------------------------------ 597 (713)
-...++.++|+..+...+.+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 55555555555554433322
Q ss_pred ----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005133 598 ----DARH-----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668 (713)
Q Consensus 598 ----~p~~-----~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~ 668 (713)
.|+. ...|...+..+...+..++|..++.++-++.|..+..|+..|.++...|+.++|.+.|..++.++|+
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 0110 1346678888999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHH--HHHHHHHHCCCChhHHHhccC
Q 005133 669 NPLPMYQKANILLSLEKFDEALE--VLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 669 ~~~~~~~la~~~~~~g~~~eA~~--~~~kal~l~P~~~~~~~~Lg~ 712 (713)
++.+...+|.++.+.|+..-|.. .+..+++++|.+.++|+.||+
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 99999999999999999888888 999999999999999999985
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.64 E-value=2.9e-14 Score=156.45 Aligned_cols=228 Identities=16% Similarity=0.125 Sum_probs=192.8
Q ss_pred HHHHHHccCCHHHHHHHHHcCccc--------CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------CCCCHH
Q 005133 438 EGYRMSCMYRCKDALDVYLKLPHK--------HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA--------SPYSLE 501 (713)
Q Consensus 438 ~a~~l~~~g~~~eAi~~l~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~--------~p~~~~ 501 (713)
.+..+..+|+|++|+..++.++.. ++........+|.+|..+++|.+|+..|++++.+ +|....
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 455567899999999999998765 5656666667999999999999999999999986 334466
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------C
Q 005133 502 GMDIYSTVLYHLKEDMKLSYLAQELITTDR--------LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN--------P 565 (713)
Q Consensus 502 a~~~la~~l~~~g~~~~A~~~~~kal~~~p--------~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~--------p 565 (713)
.+..++.+|...|++.+|..++++++++.. .-...+..++.++..++++++|+.++++++++. +
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 789999999999999999999999987642 233567788999999999999999999998872 2
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 005133 566 RFAYGHTLCGHEYVALEDFENGIRSYQSALRVD--------ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI------ 631 (713)
Q Consensus 566 ~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~--------p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~------ 631 (713)
.-+..+..+|.+|..+|++++|.++|++++.+. +.....+..+|..|.+.+++.+|.+.|.+++.+
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 335678899999999999999999999999874 233567889999999999999999999998876
Q ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 632 -SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 632 -~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
.|+-...+.+||.+|..+|++++|+++.++++..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2344568899999999999999999999998853
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.63 E-value=4.5e-14 Score=143.71 Aligned_cols=189 Identities=13% Similarity=0.051 Sum_probs=126.7
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---H
Q 005133 497 PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP---QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAY---G 570 (713)
Q Consensus 497 p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~---~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~---a 570 (713)
+.....++.+|..+...|++++|...+++++...|.++ .+++.+|.++...|++++|+..|+++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34455666666666666666666666666666666554 45566666666666666666666666666665543 4
Q ss_pred HHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 571 HTLCGHEYVAL--------EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYL 642 (713)
Q Consensus 571 ~~~lg~~~~~~--------g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 642 (713)
++.+|.++... |++++|+..|++++..+|++..++..+..+....+ . + ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~---~----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R---L----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H---H----------HHHHHHH
Confidence 56666666554 55666666666666666665444322222111000 0 0 1123478
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 643 GTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 643 a~~~~~~g~~eeAl~~l~kal~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
|.+|...|++++|+..|++++...|+. +.+++.+|.++..+|++++|..+++.+....|+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 899999999999999999999997764 578999999999999999999999888777663
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.62 E-value=3.2e-13 Score=146.24 Aligned_cols=267 Identities=12% Similarity=0.023 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCcccCC---CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHY---NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTV 509 (713)
Q Consensus 433 l~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~---~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~ 509 (713)
+.++..|..+...|+.++|...+.++....+ +.....+..|.+++..|++++|++.++++++.+|.+..++.. +..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 3445556666667777777777766544333 345566777788888888888888888888888887766654 444
Q ss_pred HHHccCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 005133 510 LYHLKED----MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFE 585 (713)
Q Consensus 510 l~~~g~~----~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~e 585 (713)
+...+.. ..+...+.......|.....+..+|.++...|++++|+..+++++++.|++..++..+|.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 4444433 333333333334455566666777778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH----------------------
Q 005133 586 NGIRSYQSALRVDARHY----NSWYGLGMVYLRQEKFEFSEHHFRMAFQISP--HSSV---------------------- 637 (713)
Q Consensus 586 eAl~~~~~al~~~p~~~----~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p--~~~~---------------------- 637 (713)
+|+.++++++...|..+ ..+..+|.++...|++++|+..|++++...| ....
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 88888888887765332 3455778888888888888888887765444 1100
Q ss_pred --------------------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHcCCHHH
Q 005133 638 --------------------IMSYLGTAMHALKRSGEAIEMMEKAILADKK---------NPLPMYQKANILLSLEKFDE 688 (713)
Q Consensus 638 --------------------~~~~la~~~~~~g~~eeAl~~l~kal~~~p~---------~~~~~~~la~~~~~~g~~~e 688 (713)
.....+.++...|+.++|...++.+...... ...+....+.++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 0013444455566666666666665443211 23445566777777777777
Q ss_pred HHHHHHHHHHHC
Q 005133 689 ALEVLEELKEYA 700 (713)
Q Consensus 689 A~~~~~kal~l~ 700 (713)
|++.+..++.+.
T Consensus 326 A~~~L~~al~~a 337 (355)
T cd05804 326 ALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHH
Confidence 777777776643
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.59 E-value=2.9e-13 Score=137.74 Aligned_cols=190 Identities=15% Similarity=0.090 Sum_probs=158.6
Q ss_pred cCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--
Q 005133 461 KHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL---EGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQ-- 535 (713)
Q Consensus 461 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~---~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~-- 535 (713)
..+..+..++.+|..++..|++++|+..|++++...|.++ .++..+|.++...|++++|+..++++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456788999999999999999999999999999999875 57899999999999999999999999999998775
Q ss_pred -HHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 005133 536 -SWCAMGNCYSLQ--------KDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWY 606 (713)
Q Consensus 536 -~~~~la~~~~~~--------g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~ 606 (713)
+++.+|.++... |++++|++.|++++..+|+...++..+..+....+ .. .....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~~-------------~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----RL-------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----HH-------------HHHHH
Confidence 788999999876 88999999999999999998766544332221111 00 12345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005133 607 GLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (713)
Q Consensus 607 ~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p 667 (713)
.+|.+|...|++++|+..|++++...|+. +.+++.+|.++..+|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 78899999999999999999999997764 57899999999999999999999888776655
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.58 E-value=3e-13 Score=146.06 Aligned_cols=269 Identities=13% Similarity=0.038 Sum_probs=213.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~ 513 (713)
..|.++...+..++|...++..+.+++..|..++.+...|..+..+|+-++|..+.+.++..++.....|..+|.++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 56677777888888999999888888888888888888999888899999999999999988888888888899888888
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 005133 514 KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQS 593 (713)
Q Consensus 514 g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~ 593 (713)
+++++|+.+|..++..+|++..+|.-++.+..++++++.....-.+.++..|.....|..++..+...|++..|..+++.
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998888988888888888988888888888888888888888888888888888888888877
Q ss_pred HHHhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 594 ALRVD---AR-----HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 594 al~~~---p~-----~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
..+.. |. ..........+..+.|.+++|++.+..--..--+........|.++.+++++++|...|...+..
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 76654 32 23345556677777888888888776543332333345566788888889999999999988888
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCCC
Q 005133 666 DKKNPLPMYQKANILLSLEKFDEAL-EVLEELKEYAPR 702 (713)
Q Consensus 666 ~p~~~~~~~~la~~~~~~g~~~eA~-~~~~kal~l~P~ 702 (713)
+|++...+..+-.++..-.+.-+++ ..|...-+..|.
T Consensus 249 nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 8888888888777776333344444 555555555554
No 79
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.7e-14 Score=146.70 Aligned_cols=243 Identities=16% Similarity=0.155 Sum_probs=214.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK 548 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 548 (713)
....|..++...+|.+|+..|..++...|++...|...+.++..+++++++.-.+++.++++|.....+...+.++...+
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHHHH------------Hh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 549 DHETALKNFQRAV------------QL------NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (713)
Q Consensus 549 ~~~~Al~~~~kal------------~~------~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~ 610 (713)
+..+|.+.++..- .+ .|....+....+.++...+++++|...--..+++++.+.++++..|.
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 8888776655211 01 13334556777899999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHH
Q 005133 611 VYLRQEKFEFSEHHFRMAFQISPHSSV------------IMSYLGTAMHALKRSGEAIEMMEKAILADKKN----PLPMY 674 (713)
Q Consensus 611 ~y~~~g~~~eA~~~l~kal~~~p~~~~------------~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~----~~~~~ 674 (713)
+++..++.+.|+.+|++++.++|+... .+..-|.-.++.|+|.+|.+.|..+|.++|.+ ...|.
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 999999999999999999999998744 45567888999999999999999999999986 45688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 675 QKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 675 ~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
+++.+...+|+..+|+...+.++.++|....++...|
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra 328 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA 328 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 9999999999999999999999999998877776544
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.57 E-value=2.8e-13 Score=151.66 Aligned_cols=187 Identities=11% Similarity=0.097 Sum_probs=162.3
Q ss_pred cCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 005133 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQ 524 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~ 524 (713)
..+...|+..|-+++..++..+.++..+|.+|...-|...|.++|++|.++|+.+.+++...+..+....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999888866
Q ss_pred HHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 005133 525 ELITTDRLA--PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY 602 (713)
Q Consensus 525 kal~~~p~~--~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~ 602 (713)
.+-+..|.. ...|..+|..|...+++.+|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 666666543 356777888888888889999999999988998888999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005133 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 603 ~~~~~lg~~y~~~g~~~eA~~~l~kal~~ 631 (713)
...+..+.+....|+|.+|+..+...+..
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 88888888888888888888777766654
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.2e-11 Score=132.50 Aligned_cols=434 Identities=12% Similarity=0.064 Sum_probs=280.2
Q ss_pred hHHHHHHHHHHhhccchhhHHHHHhhhhcCCCchh-HHHHHHHHhhcCCHHHHHHHHhcCC--CcchhH--HHHHHHhhc
Q 005133 3 GILTDCVQNSLRYFMYRNAIFLCERLCAEFPSEVN-LQLLATCYLQNNQAYAAYNILKGTQ--MALSRY--LFAVACYQM 77 (713)
Q Consensus 3 ~~l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~-~~llA~~~~~~~~~~~A~~~l~~~~--~~~~~~--l~A~~~~~l 77 (713)
+.|-.-|..++.++.|+.|+-.|.+++...|++++ ++-=--|+-..++|+.|+.+++..+ .....| --|-|.+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 35666788899999999999999999999998875 5555678889999999999888763 444444 778999999
Q ss_pred CChhHHHHhhCCCCCCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcchHHHHHHHhcCCccchhHHHHHh
Q 005133 78 DLLSEAEAALSPVNEPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCMLGAAEEATAVFSEA 157 (713)
Q Consensus 78 ~~~~ea~~~L~~~~~~~~~~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~~~a~~~L~~~~~~~~~~~~f~~~ 157 (713)
++.+||+..+...+. +...+.-|.|+++.++|+.++|...|+.-++-+-...+.-... ...
T Consensus 93 nk~Dealk~~~~~~~------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~-------------nl~ 153 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDR------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA-------------NLL 153 (652)
T ss_pred ccHHHHHHHHhcccc------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH-------------HHH
Confidence 999999999963222 2245789999999999999999999988777654443332111 000
Q ss_pred HHH-HHHHHhhhcccccccCCCCCCCCccccCCCCCCCCCChhhhhhhhhcccCCCCCCCCCccccccccCCCCCCCCCC
Q 005133 158 AAL-CIQKQYLQNGLATQNLYLPNEDRNLVSSKSAGTEDISPRQLKHMQANNLRDIPGNYHGAAVSAAAASQPLNGGPSN 236 (713)
Q Consensus 158 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (713)
... ..+.|-+
T Consensus 154 a~~a~l~~~~~--------------------------------------------------------------------- 164 (652)
T KOG2376|consen 154 AVAAALQVQLL--------------------------------------------------------------------- 164 (652)
T ss_pred HHHHhhhHHHH---------------------------------------------------------------------
Confidence 000 0000000
Q ss_pred CCccCCCCCCccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccCCccccccCCccccccccccCCCCCCCcc
Q 005133 237 ASFYNTPSPITTQLSGVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFVDEGKLRKISGRLFSDSGPRRST 316 (713)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (713)
T Consensus 165 -------------------------------------------------------------------------------- 164 (652)
T KOG2376|consen 165 -------------------------------------------------------------------------------- 164 (652)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCccccccCCCCCCCCcccCCCcCcccccccccccCCcCCCccccccCCCCCCCCccccCcCCccccCCC
Q 005133 317 RLAGEAGANANMSTTTVAGNGTTNSSKYLGGSKLSSVALRSVTLRKGQSWANENIDEGMRNEPFDDSRANTASTVSSSFP 396 (713)
Q Consensus 317 rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (713)
+ .. +
T Consensus 165 ---q---------~v---------------------------------~------------------------------- 168 (652)
T KOG2376|consen 165 ---Q---------SV---------------------------------P------------------------------- 168 (652)
T ss_pred ---H---------hc---------------------------------c-------------------------------
Confidence 0 00 0
Q ss_pred CCCCccccccCCccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHcC--------cccCCC----
Q 005133 397 TSDTRSAVQEGTTVPIGGTAMNGSRIMTGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKL--------PHKHYN---- 464 (713)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~--------~~~~~~---- 464 (713)
.. + ..+ .-..|..|..++..|+|.+|+++++++ ...+.+
T Consensus 169 ~v------------------~-----e~s------yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEei 219 (652)
T KOG2376|consen 169 EV------------------P-----EDS------YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEI 219 (652)
T ss_pred CC------------------C-----cch------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhH
Confidence 00 0 001 124577888889999999999999988 222222
Q ss_pred ---CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH----H-HHHHHHHHHHHhCC-----
Q 005133 465 ---TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED----M-KLSYLAQELITTDR----- 531 (713)
Q Consensus 465 ---~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~----~-~A~~~~~kal~~~p----- 531 (713)
...+...++.++..+|+-++|...|...+..+|-+.........-+...... + .++...+......+
T Consensus 220 e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~ 299 (652)
T KOG2376|consen 220 EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLS 299 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHH
Confidence 2336778999999999999999999999999987754443333322222211 1 11111111111111
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHH
Q 005133 532 -----LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-YNSW 605 (713)
Q Consensus 532 -----~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~-~~~~ 605 (713)
.-..++...+.+.+..+.-+.+.+...+.-...|....--........+...+.+|+.++....+.+|.. ..+.
T Consensus 300 ~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~ 379 (652)
T KOG2376|consen 300 KLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVL 379 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHH
Confidence 0123444555555556666666655555444444443333333444444446888888888888888876 6677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCCh
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAF--------QISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA-------DKKNP 670 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal--------~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~-------~p~~~ 670 (713)
..++.+.+.+|+++.|++.+...+ +. ...+.+...+-..+++.++-+-|...+..++.- .+...
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~ 458 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALL 458 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHH
Confidence 788888888889998888888332 22 233445555666677777766666666666543 22233
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhc
Q 005133 671 LPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALM 710 (713)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~L 710 (713)
..+..++....+.|+-++|...+++.++.+|++.++...|
T Consensus 459 ~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 459 SLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred hHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4456677777777888888888888888888887765543
No 82
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.56 E-value=7.1e-14 Score=130.56 Aligned_cols=124 Identities=10% Similarity=0.144 Sum_probs=74.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005133 555 KNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (713)
Q Consensus 555 ~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~ 634 (713)
.+|+++++++|+. +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3455555555543 3345556666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005133 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (713)
Q Consensus 635 ~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~ 681 (713)
++.+++.+|.++..+|++++|+..|++++.+.|+++..+..++.+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666555555443
No 83
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.56 E-value=4.9e-14 Score=131.68 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=116.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005133 588 IRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (713)
Q Consensus 588 l~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p 667 (713)
..+|+++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 56899999999885 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 668 KNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 668 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
+++.+++.+|.++..+|++++|+..|++++++.|+++..+.++|.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999987764
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=9.4e-13 Score=142.28 Aligned_cols=243 Identities=15% Similarity=0.171 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 005133 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSL 546 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 546 (713)
..++..+.-.++.++|.+.++..+.+++..|.+.+.+...|..+..+|+.++|..+...++..++.....|..+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 45677777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 547 QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFR 626 (713)
Q Consensus 547 ~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~ 626 (713)
.++|++|+++|+.|+.++|++..+|..++.+..++++++-....-.+.++..|..-..|..++..+...|++..|...++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhC---CCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 627 MAFQIS---PHS-----SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 627 kal~~~---p~~-----~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
...+.. |.. .........++.+.|.+++|++.+.+--..--+........|.++.++|++++|...|...+.
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 877654 322 235566777888899999999988765544444555667789999999999999999999999
Q ss_pred HCCCChhHHHh
Q 005133 699 YAPRESGVYAL 709 (713)
Q Consensus 699 l~P~~~~~~~~ 709 (713)
.+|++...+..
T Consensus 248 rnPdn~~Yy~~ 258 (700)
T KOG1156|consen 248 RNPDNLDYYEG 258 (700)
T ss_pred hCchhHHHHHH
Confidence 99998776654
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=1.8e-11 Score=123.40 Aligned_cols=253 Identities=17% Similarity=0.124 Sum_probs=173.5
Q ss_pred cCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH-
Q 005133 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLA- 523 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~- 523 (713)
.-.|++||++|.+++...|+...+-..+|.||+++.-|+-+.+.+.--++..|+...+....+..++++-.-..|..-.
T Consensus 164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence 3368999999999999998888888889999999999999999999999999999888888777766653221111111
Q ss_pred -------------H--------------HHHHhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005133 524 -------------Q--------------ELITTDR----LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHT 572 (713)
Q Consensus 524 -------------~--------------kal~~~p----~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~ 572 (713)
+ -+++.-| .-|++...+...|..+++..+|+...+. ++|..+.-+.
T Consensus 244 ~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~Eyi 320 (557)
T KOG3785|consen 244 ELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYI 320 (557)
T ss_pred HHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHH
Confidence 1 1112222 2457788888889999999999887765 6788887777
Q ss_pred HHHHHHHHccCH-------------------------------------------HHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 573 LCGHEYVALEDF-------------------------------------------ENGIRSYQSALRVDARHYNSWYGLG 609 (713)
Q Consensus 573 ~lg~~~~~~g~~-------------------------------------------eeAl~~~~~al~~~p~~~~~~~~lg 609 (713)
..|.++...|+- ++.+.++...-...-++....++++
T Consensus 321 lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~A 400 (557)
T KOG3785|consen 321 LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLA 400 (557)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHH
Confidence 777777666543 3333333333333344455566778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHH
Q 005133 610 MVYLRQEKFEFSEHHFRMAFQISP-HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN-PLPMYQKANILLSLEKFD 687 (713)
Q Consensus 610 ~~y~~~g~~~eA~~~l~kal~~~p-~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~-~~~~~~la~~~~~~g~~~ 687 (713)
.++...|+|.+|.+.|-+.-...- +.......+|.||...++.+.|...+-+. ..|.. -..+..+|..+++.+++-
T Consensus 401 QAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888866544332 22334456788888888888887766432 11222 233445667777788887
Q ss_pred HHHHHHHHHHHHCCC
Q 005133 688 EALEVLEELKEYAPR 702 (713)
Q Consensus 688 eA~~~~~kal~l~P~ 702 (713)
-|.+.|...-.++|.
T Consensus 479 yaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 479 YAAKAFDELEILDPT 493 (557)
T ss_pred HHHHhhhHHHccCCC
Confidence 777888877777775
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.55 E-value=7.7e-13 Score=143.21 Aligned_cols=205 Identities=10% Similarity=-0.052 Sum_probs=172.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 005133 462 HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS---LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWC 538 (713)
Q Consensus 462 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~---~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~ 538 (713)
+|+.+.++..+|.++...|+.++|...+.++.+..+.+ .+.....+.+++..|++++|...++++++..|.+..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68899999999999999999999999999999888754 456777788999999999999999999999999987777
Q ss_pred HHHHHHHhcCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 539 AMGNCYSLQKD----HETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (713)
Q Consensus 539 ~la~~~~~~g~----~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~ 614 (713)
. +..+...++ ...+.+.+.......|.....+..+|.++...|++++|+..++++++..|++..++..+|.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 5 555554444 44444444443345677777888899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005133 615 QEKFEFSEHHFRMAFQISPHSS----VIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~~~p~~~----~~~~~la~~~~~~g~~eeAl~~l~kal~~~p 667 (713)
.|++++|+.++++++...|.++ ..+..+|.++...|++++|+..|++++...|
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999876443 2456799999999999999999999977666
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.53 E-value=1.2e-11 Score=137.59 Aligned_cols=265 Identities=13% Similarity=0.043 Sum_probs=207.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-
Q 005133 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK- 514 (713)
Q Consensus 436 l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g- 514 (713)
|-++..+...|++++|++.+++....-.+...++-..|.++..+|++++|...|+..+..+|++...+..+..++....
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 4455566789999999999999888888888999999999999999999999999999999999999999988884443
Q ss_pred ----CHHHHHHHHHHHHHhCCCCH--------------------------------HHHHHHHHHHHhcCCHHHHHHHHH
Q 005133 515 ----EDMKLSYLAQELITTDRLAP--------------------------------QSWCAMGNCYSLQKDHETALKNFQ 558 (713)
Q Consensus 515 ----~~~~A~~~~~kal~~~p~~~--------------------------------~~~~~la~~~~~~g~~~~Al~~~~ 558 (713)
.......+|+++....|... .++..+-.+|....+..-...++.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 45667778888777766422 111112222222222222222222
Q ss_pred HHHHh---------------CCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005133 559 RAVQL---------------NPRF--AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS 621 (713)
Q Consensus 559 kal~~---------------~p~~--~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA 621 (713)
..+.. .|.. .++++.++..|...|++++|+.+.++++...|..++.|+..|.+|...|++.+|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 22211 1111 245688899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--C-------hhHHHHHHHHHHHcCCHHHHHHH
Q 005133 622 EHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK--N-------PLPMYQKANILLSLEKFDEALEV 692 (713)
Q Consensus 622 ~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~--~-------~~~~~~la~~~~~~g~~~eA~~~ 692 (713)
.+.++.|..+++.|-.+-...+..+.+.|+.++|.+.+......+.+ . .......|.+|.+.|++..|+..
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999998877654421 1 12234579999999999999999
Q ss_pred HHHHHHHC
Q 005133 693 LEELKEYA 700 (713)
Q Consensus 693 ~~kal~l~ 700 (713)
|..+.+..
T Consensus 328 ~~~v~k~f 335 (517)
T PF12569_consen 328 FHAVLKHF 335 (517)
T ss_pred HHHHHHHH
Confidence 99887753
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.53 E-value=9.1e-13 Score=129.81 Aligned_cols=122 Identities=17% Similarity=0.309 Sum_probs=59.9
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHH
Q 005133 581 LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAM-HALKR--SGEAIE 657 (713)
Q Consensus 581 ~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~-~~~g~--~eeAl~ 657 (713)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 334444444555555555555555555555555555555555555555555555555555555442 33343 245555
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 658 MMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 658 ~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
.++++++.+|+++.+++.+|.++...|++++|+.++++++++.|.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 555555555555555555555555555555555555555544443
No 89
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=3.5e-11 Score=124.12 Aligned_cols=264 Identities=15% Similarity=0.026 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY-SLEGMDIYSTVL 510 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~-~~~a~~~la~~l 510 (713)
.-..+.+|..-+..|+|.+|+....+..+..+....++..-+.+.-++||++.|-.++.++-+..++ ........+.++
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3346677777788999999999999988888888888888899999999999999999999999554 355667888999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------------------------C-
Q 005133 511 YHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN------------------------P- 565 (713)
Q Consensus 511 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~------------------------p- 565 (713)
...|++..|..-..++++..|.++++......+|...|+|.+...++.+.-+.. +
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999888776654321 1
Q ss_pred -----------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 566 -----------------RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMA 628 (713)
Q Consensus 566 -----------------~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~ka 628 (713)
.++.....++.-+..+|++++|.++.+.+++..-+. .....++ ...-++...=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHH
Confidence 123334456667888999999999999999875443 3222222 23567888889999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005133 629 FQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 629 l~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 699 (713)
++..|+++.++..+|.++++.+.|.+|..+|+.+++..| +...+..+|.++.++|+..+|.+.+++++.+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887 5778889999999999999999999999864
No 90
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=6.6e-12 Score=121.94 Aligned_cols=200 Identities=12% Similarity=0.028 Sum_probs=95.5
Q ss_pred HccCCHHHHHHHHHcCccc------CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 005133 443 SCMYRCKDALDVYLKLPHK------HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~ 516 (713)
....+.++-+++..+++.. .++...++-....+....|+.+-|..++.+.....|.........|..+...|.+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 3444555555555544321 1222223333444444445555555555555554455544444445555555555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (713)
Q Consensus 517 ~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~ 596 (713)
++|+++|+..++.+|.+..++...--+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-+|++++-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 55555555555555544444444444444444444555555444444445555555555555555555555555555554
Q ss_pred hCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 597 VDARHYNSWYGLGMVYLRQE---KFEFSEHHFRMAFQISPHSSVIMSYL 642 (713)
Q Consensus 597 ~~p~~~~~~~~lg~~y~~~g---~~~eA~~~l~kal~~~p~~~~~~~~l 642 (713)
+.|-++..+..+|.+++-+| +++-|.++|.++++++|.+..+++.+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 55544444444444444443 33444445555555444444444333
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.49 E-value=2.3e-12 Score=126.96 Aligned_cols=124 Identities=18% Similarity=0.288 Sum_probs=94.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 005133 547 QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY-LRQEK--FEFSEH 623 (713)
Q Consensus 547 ~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y-~~~g~--~~eA~~ 623 (713)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 556677777777777777777777777777777778888888888888777777777777777764 55565 477888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005133 624 HFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (713)
Q Consensus 624 ~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~ 670 (713)
.++++++.+|+++.++..+|.+++..|++++|+.+|+++++..|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 88888888887777777788888888888888888888777766544
No 92
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.49 E-value=3.7e-12 Score=147.34 Aligned_cols=228 Identities=13% Similarity=0.072 Sum_probs=178.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 005133 460 HKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA------ 533 (713)
Q Consensus 460 ~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~------ 533 (713)
.-.|.+..++..++..|...+++++|+..++.+++..|+...+++.+|.++...+++.++..+ .++...+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 345677777888888888888888888888888888888888888888877777776665544 444444444
Q ss_pred -------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 005133 534 -------------PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600 (713)
Q Consensus 534 -------------~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~ 600 (713)
..+++.+|.||.++|++++|...|+++++.+|+++.++..+|..|... +.++|+.++.+|+..
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 488999999999999999999999999999999999999999999988 999999999999876
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--------------------HHHHHHHHHcCChHHHHHHHH
Q 005133 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIM--------------------SYLGTAMHALKRSGEAIEMME 660 (713)
Q Consensus 601 ~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~--------------------~~la~~~~~~g~~eeAl~~l~ 660 (713)
|+..++|.++.+++++.+..+|++.+.+ .-+-..|...++|++++.+++
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 5666788888888888888888775532 223367778889999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHCCCCh
Q 005133 661 KAILADKKNPLPMYQKANILLSL--------------------EKFDEALEVLEELKEYAPRES 704 (713)
Q Consensus 661 kal~~~p~~~~~~~~la~~~~~~--------------------g~~~eA~~~~~kal~l~P~~~ 704 (713)
.+++.+|.+..+...++.+|... ..+..|+..|++.+.+++.+-
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNF 311 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCE
Confidence 99999999999999999998732 134555566666665555543
No 93
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.47 E-value=5e-12 Score=124.13 Aligned_cols=179 Identities=19% Similarity=0.135 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005133 482 YLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAV 561 (713)
Q Consensus 482 ~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal 561 (713)
...+...+-+....+|.+..+ ..++..+...|+-+....+..+.....|.+...+..+|......|++.+|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 334666666667777777777 7777777778877777777777777777777777778888888888888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005133 562 QLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSY 641 (713)
Q Consensus 562 ~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 641 (713)
.+.|.+..+|..+|.+|.+.|++++|...|.+++++.|.++.+..++|..|.-.|+++.|..++..+....+.+..+..+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888777778888888
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 005133 642 LGTAMHALKRSGEAIEMMEK 661 (713)
Q Consensus 642 la~~~~~~g~~eeAl~~l~k 661 (713)
++.+...+|++++|.....+
T Consensus 208 LAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 208 LALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHhhcCChHHHHhhccc
Confidence 88888888888888776654
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.47 E-value=4.7e-12 Score=124.28 Aligned_cols=179 Identities=15% Similarity=0.191 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 005133 518 KLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597 (713)
Q Consensus 518 ~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~ 597 (713)
.+...+-+.....|++..+ ..++..+...|+-+.+..+..++....|.+...+..+|......|++.+|+..++++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3555666777889999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005133 598 DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (713)
Q Consensus 598 ~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la 677 (713)
.|+++.+|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..|.-.|+++.|..++..+....+.+..+..+++
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 005133 678 NILLSLEKFDEALEVLEELK 697 (713)
Q Consensus 678 ~~~~~~g~~~eA~~~~~kal 697 (713)
.+....|++++|.....+-+
T Consensus 210 l~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHhhcCChHHHHhhccccc
Confidence 99999999999987665433
No 95
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.47 E-value=3.1e-13 Score=138.30 Aligned_cols=268 Identities=18% Similarity=0.216 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCC----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC------CCHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT----GWVLSQVGKAYFEVVDYLEAERAFTLARRASP------YSLE 501 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~----~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p------~~~~ 501 (713)
.+..-..|..+++.|++...+.+|+.+++...++ ..+|..+|.+|+.+++|++|+++-..=+.+.. ....
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 5666778999999999999999999998766543 45788999999999999999998654443321 1234
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCC--------------------HHHHHH
Q 005133 502 GMDIYSTVLYHLKEDMKLSYLAQELITTDRL------APQSWCAMGNCYSLQKD--------------------HETALK 555 (713)
Q Consensus 502 a~~~la~~l~~~g~~~~A~~~~~kal~~~p~------~~~~~~~la~~~~~~g~--------------------~~~Al~ 555 (713)
.--++|..+..+|.+++|+.+..+-+..... ...+++.+|.+|...|+ ++.|.+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 4567889999999999999888877765432 35789999999987664 345666
Q ss_pred HHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 005133 556 NFQRAVQLNPR------FAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR------HYNSWYGLGMVYLRQEKFEFSEH 623 (713)
Q Consensus 556 ~~~kal~~~p~------~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~------~~~~~~~lg~~y~~~g~~~eA~~ 623 (713)
+|..-+++... ...++-.+|..|+.+|+|++|+..-+.-+.+... .-.++.++|.+++-.|+++.|++
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 77666655322 2356778999999999999999998877766432 24578899999999999999999
Q ss_pred HHHHHHHhC----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHcCCHHHHHH
Q 005133 624 HFRMAFQIS----PH--SSVIMSYLGTAMHALKRSGEAIEMMEKAILADK------KNPLPMYQKANILLSLEKFDEALE 691 (713)
Q Consensus 624 ~l~kal~~~----p~--~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p------~~~~~~~~la~~~~~~g~~~eA~~ 691 (713)
+|++.+.+. .. .+...+.+|..|.-..++++|+.++++-+.+.. ....+++.||..+-.+|..++|+.
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 999876542 22 245678899999999999999999998776532 246788999999999999999999
Q ss_pred HHHHHHHH
Q 005133 692 VLEELKEY 699 (713)
Q Consensus 692 ~~~kal~l 699 (713)
+.++.++.
T Consensus 337 fae~hl~~ 344 (639)
T KOG1130|consen 337 FAELHLRS 344 (639)
T ss_pred HHHHHHHH
Confidence 98888764
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.47 E-value=6.6e-12 Score=144.54 Aligned_cols=138 Identities=8% Similarity=-0.061 Sum_probs=69.4
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGL 608 (713)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~l 608 (713)
..|.+++++..+|.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005133 609 GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (713)
Q Consensus 609 g~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~ 666 (713)
|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5555555555555555555554444444555555555555555555555555554443
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=2.7e-10 Score=126.89 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 545 (713)
.|+++.+|..|...|++++|+++.+++++..|..++.+...|.++.+.|++.+|...++.+-.++..+-.+-...+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 005133 546 LQKDHETALKNFQRAVQLNPRF---------AYGHTLCGHEYVALEDFENGIRSYQSALRV 597 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~---------~~a~~~lg~~~~~~g~~eeAl~~~~~al~~ 597 (713)
+.|+.++|.+.+....+.+-+. .+.....|.+|.+.|++..|++.|..+.+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999988876554211 123345789999999999999999988775
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.46 E-value=3.1e-12 Score=140.11 Aligned_cols=223 Identities=15% Similarity=0.175 Sum_probs=200.7
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 463 YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGN 542 (713)
Q Consensus 463 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~ 542 (713)
|.....-..+|..+...|-...|+..|++. +.|.....||...|+..+|..+..+.++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 445556778999999999999999999986 4577788999999999999999999998 6677888989988
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005133 543 CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSE 622 (713)
Q Consensus 543 ~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~ 622 (713)
+.....-|++|.++.+.. .+.+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|.
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 888777777777766653 34477778888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 623 HHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 623 ~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
++|..++..+|++..+|.+++.+|.++|+..+|...+++|++.+-++..+|.+...+..+.|.+++|+..|.+.+.+.
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998764
No 99
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.3e-10 Score=113.18 Aligned_cols=186 Identities=11% Similarity=0.018 Sum_probs=166.0
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 495 ASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLC 574 (713)
Q Consensus 495 ~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~l 574 (713)
..++....+.....+....|+.+.|..+++++....|.+..+....|..+...|.+++|+++|+..++-+|.+..++...
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 34555566667777888889999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---C
Q 005133 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK---R 651 (713)
Q Consensus 575 g~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g---~ 651 (713)
..+...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|.+++-+| +
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 8888899999999999999999999999999999999999999999999999999999999999999999999887 5
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005133 652 SGEAIEMMEKAILADKKNPLPMYQKANIL 680 (713)
Q Consensus 652 ~eeAl~~l~kal~~~p~~~~~~~~la~~~ 680 (713)
++-|.++|.+++++.|.+..+++.+-.+.
T Consensus 207 ~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 77899999999999998877776654443
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.42 E-value=1.6e-12 Score=135.37 Aligned_cols=260 Identities=14% Similarity=0.049 Sum_probs=197.6
Q ss_pred HHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 005133 439 GYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMK 518 (713)
Q Consensus 439 a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~ 518 (713)
...++-.|+|..++.-++.............+.+.++++.+|+++..+...... .+....+...++..+...++.+.
T Consensus 8 vrn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence 344567899999998777222223345667888999999999998777555432 23345556666666655445555
Q ss_pred HHHHHHHHHHhC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 519 LSYLAQELITTD-R-LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (713)
Q Consensus 519 A~~~~~kal~~~-p-~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~ 596 (713)
++..++..+... + .++......|.++...|++++|++.+.+. ...+.......+|...++++.|.+.++.+.+
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 655555444322 2 24455666788899999999999988764 5678888889999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005133 597 VDARHYNSWYGLGMVYLRQE--KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (713)
Q Consensus 597 ~~p~~~~~~~~lg~~y~~~g--~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~ 674 (713)
.+.+..-+....+++.+..| ++.+|...|++..+..+..+.++..+|.++..+|+|++|.+.+++++..+|.++.++.
T Consensus 160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 98887777777777777776 6999999999988888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHCCCChhH
Q 005133 675 QKANILLSLEKF-DEALEVLEELKEYAPRESGV 706 (713)
Q Consensus 675 ~la~~~~~~g~~-~eA~~~~~kal~l~P~~~~~ 706 (713)
+++.+...+|+. +.+.+++.++....|+++.+
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 999999999998 66778899989999988754
No 101
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.41 E-value=5.2e-12 Score=116.58 Aligned_cols=116 Identities=14% Similarity=0.185 Sum_probs=65.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005133 556 NFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (713)
Q Consensus 556 ~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~ 635 (713)
.|++++..+|.+..+.+.+|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+++++++.+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 005133 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPL 671 (713)
Q Consensus 636 ~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~ 671 (713)
+..++.+|.++...|++++|+.+|+++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 555555555555555555555555555555554443
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.41 E-value=4.3e-11 Score=137.88 Aligned_cols=160 Identities=9% Similarity=-0.036 Sum_probs=145.5
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005133 481 DYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRA 560 (713)
Q Consensus 481 ~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~ka 560 (713)
...+++.-........|.+.+++..+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444444555556678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005133 561 VQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMS 640 (713)
Q Consensus 561 l~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~ 640 (713)
+..+|+++.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++....-...+.
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998766555443
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.40 E-value=2e-11 Score=141.43 Aligned_cols=201 Identities=10% Similarity=0.013 Sum_probs=177.6
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----
Q 005133 494 RASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA----- 568 (713)
Q Consensus 494 ~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~----- 568 (713)
..+|.+.+++..++..+...+++++|..+++.+++..|+...+|+.+|.++...+++.+|..+ .++...+...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 356889999999999999999999999999999999999999999999999999988887766 6665555444
Q ss_pred --------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005133 569 --------------YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (713)
Q Consensus 569 --------------~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~ 634 (713)
.+++.+|.||..+|++++|...|+++++.+|+++.+++++|..|... +.++|++++.+|+..
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 89999999999999999999999999999999999999999999999 999999999999876
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH--------------------HHHHHHHHHcCCHHHHHHHHH
Q 005133 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM--------------------YQKANILLSLEKFDEALEVLE 694 (713)
Q Consensus 635 ~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~--------------------~~la~~~~~~g~~~eA~~~~~ 694 (713)
+...++|.++.+++.+.+..+|++...+ .-+-.+|...++|++++.+++
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 6667789999999999999988876542 223367888899999999999
Q ss_pred HHHHHCCCChhHHHhcc
Q 005133 695 ELKEYAPRESGVYALMG 711 (713)
Q Consensus 695 kal~l~P~~~~~~~~Lg 711 (713)
.+++.+|++..+.+.|+
T Consensus 248 ~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 248 KILEHDNKNNKAREELI 264 (906)
T ss_pred HHHhcCCcchhhHHHHH
Confidence 99999999988776654
No 104
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.38 E-value=1.4e-11 Score=113.76 Aligned_cols=116 Identities=22% Similarity=0.311 Sum_probs=67.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005133 590 SYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~ 669 (713)
.|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 670 PLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 670 ~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
+..++.+|.++...|++++|+..|+++++++|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 555555555555555555555555555555555544
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.35 E-value=4.4e-11 Score=131.21 Aligned_cols=215 Identities=14% Similarity=0.095 Sum_probs=188.2
Q ss_pred HHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 005133 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (713)
Q Consensus 437 ~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~ 516 (713)
..+..++..|-..+|+.+|+++ ..|-....||...|+..+|..+..+-++ .|.++..|..+|.+.....-+
T Consensus 403 ~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHH
Confidence 3455668889999999999875 5677788999999999999999999999 666677777777777666555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (713)
Q Consensus 517 ~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~ 596 (713)
++|.++.+.. +..+...+|......++|.++.++++..++++|-....|+.+|.+..+.++++.|.++|..++.
T Consensus 474 EkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 474 EKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 5555554443 3446777888888899999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005133 597 VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (713)
Q Consensus 597 ~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~ 666 (713)
++|++..+|++++..|.+.++-.+|...+.+|++-+-.+..+|.+.-.+..+.|.+++|++.|.+.+.+.
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998888999999999999999999999999998763
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.9e-10 Score=113.88 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=128.4
Q ss_pred HHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 005133 441 RMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLS 520 (713)
Q Consensus 441 ~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~ 520 (713)
.+++..+|.+||+++....+..|.+-..+..+|.||+...+|..|.++|++.-...|.........+..++..+.+..|.
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34567789999999999999999888999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 005133 521 YLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600 (713)
Q Consensus 521 ~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~ 600 (713)
.......+.+....+....-+-+.+..+++..+....++.- ..+++......|.+.++.|++++|++-|+.+++...-
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 77655544322222333333444444555554444433311 0134445555555555566666666666666555555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 601 ~~~~~~~lg~~y~~~g~~~eA~~~l~kal~ 630 (713)
.+..-++++.++++.+++..|+++..+.++
T Consensus 177 qpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 177 QPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555555556666666666666555544443
No 107
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=1.2e-11 Score=123.50 Aligned_cols=120 Identities=23% Similarity=0.245 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 647 (713)
++-+..-|.-++..++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34456678888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Q 005133 648 ALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFD 687 (713)
Q Consensus 648 ~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~ 687 (713)
.+|++++|++.|+++++++|++...+..|..+-.++++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999988888888877777766655
No 108
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.28 E-value=2.3e-11 Score=124.88 Aligned_cols=244 Identities=18% Similarity=0.166 Sum_probs=186.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHH
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARRASPYSL----EGMDIYSTVLYHLKEDMKLSYLAQELITT------DRLAPQSWC 538 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~----~a~~~la~~l~~~g~~~~A~~~~~kal~~------~p~~~~~~~ 538 (713)
+..-|.-++++|++...+.+|+.+++...++. ..|..+|.+|..+++|++|+++-..-+.+ .-..+...-
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 44568889999999999999999999988774 45678889999999999999864433322 223345667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccC--------------------HHHHHHHHH
Q 005133 539 AMGNCYSLQKDHETALKNFQRAVQLNP------RFAYGHTLCGHEYVALED--------------------FENGIRSYQ 592 (713)
Q Consensus 539 ~la~~~~~~g~~~~Al~~~~kal~~~p------~~~~a~~~lg~~~~~~g~--------------------~eeAl~~~~ 592 (713)
.+|+.+...|.|++|+.+..+-+.+.. ....+++++|.+|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 899999999999999999888776522 235789999999988764 345566666
Q ss_pred HHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHH
Q 005133 593 SALRVDAR------HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMME 660 (713)
Q Consensus 593 ~al~~~p~------~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~eeAl~~l~ 660 (713)
.-+++... ...++-+||..|+-.|+|+.|+..-+.-+.+.... -.++.++|.++.-+|+++.|+++|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 55554322 23467789999999999999999988877765433 2478899999999999999999999
Q ss_pred HHHHh----CCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC------CChhHHHhccC
Q 005133 661 KAILA----DKK--NPLPMYQKANILLSLEKFDEALEVLEELKEYAP------RESGVYALMGC 712 (713)
Q Consensus 661 kal~~----~p~--~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P------~~~~~~~~Lg~ 712 (713)
+.+.+ ... .....+.||..|.-..++++|+.|+.+-+.+.. ....+++.||.
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgn 323 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGN 323 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 97754 322 345578999999999999999999998776542 23456666653
No 109
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.27 E-value=9e-10 Score=116.74 Aligned_cols=153 Identities=17% Similarity=0.104 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 531 RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (713)
Q Consensus 531 p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~ 610 (713)
|....+++..+..++..|++++|+..++..+...|+++..+...+.++...++..+|++.+++++..+|+.+..+..+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56677788888888888888888888888888888888888888888888888888888888888888888778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 005133 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEAL 690 (713)
Q Consensus 611 ~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~ 690 (713)
+|.+.|++.+|+..+...+..+|+++..|..||.+|..+|+..+|...+ +..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 8888888888888888888888888888888888888887776665543 55566667777777
Q ss_pred HHHHHHHHHC
Q 005133 691 EVLEELKEYA 700 (713)
Q Consensus 691 ~~~~kal~l~ 700 (713)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 7777666654
No 110
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=5.4e-11 Score=118.95 Aligned_cols=132 Identities=24% Similarity=0.346 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~ 613 (713)
++-+-.-|.-++..++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHHh
Q 005133 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSG---EAIEMMEKAILA 665 (713)
Q Consensus 614 ~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~e---eAl~~l~kal~~ 665 (713)
.+|++++|++.|+++|+++|++..+..+|.++-.++++.. .+...++-+..+
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence 9999999999999999999999999999999888888776 444445444433
No 111
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.5e-09 Score=116.75 Aligned_cols=228 Identities=12% Similarity=0.013 Sum_probs=144.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 005133 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (713)
Q Consensus 436 l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~ 515 (713)
|..-..+...++|++|+....+++...|++..++...-.+.++.++|++|++..++-....-. ....+..+.|.+++++
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHccc
Confidence 344445578889999999999998888888888888888889999999888544443322111 1122567777788888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (713)
Q Consensus 516 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al 595 (713)
.++|+..++ ..++.+..+....|.+++++++|++|+..|+..++.+.++.+.-......-... -..+ . ..+.+
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~~-~-~~q~v 167 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQV-Q-LLQSV 167 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhhH-H-HHHhc
Confidence 887777766 445555667777777778888888888888877776655544433322221111 0011 1 22233
Q ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CC--------HHHHHHHHHHHHHcCChHHHHHHH
Q 005133 596 RVDAR-HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP-------HS--------SVIMSYLGTAMHALKRSGEAIEMM 659 (713)
Q Consensus 596 ~~~p~-~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p-------~~--------~~~~~~la~~~~~~g~~eeAl~~l 659 (713)
...|+ ..+.+++.+.++...|+|.+|++.+++++++.. .+ ..+...++.++..+|+.++|...|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33333 567777778888888888888888777744311 00 114455666666666666666666
Q ss_pred HHHHHhCCCChh
Q 005133 660 EKAILADKKNPL 671 (713)
Q Consensus 660 ~kal~~~p~~~~ 671 (713)
...++.+|.+..
T Consensus 248 ~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 248 VDIIKRNPADEP 259 (652)
T ss_pred HHHHHhcCCCch
Confidence 666666655543
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.26 E-value=9.4e-09 Score=125.46 Aligned_cols=233 Identities=12% Similarity=0.015 Sum_probs=173.4
Q ss_pred HHHHHHHccCCHHHHHHHHHcCcccCC------CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC--------CHHH
Q 005133 437 GEGYRMSCMYRCKDALDVYLKLPHKHY------NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY--------SLEG 502 (713)
Q Consensus 437 ~~a~~l~~~g~~~eAi~~l~~~~~~~~------~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~--------~~~a 502 (713)
..|..+...|++++|...+.+++.... ....++..+|.+++..|++++|...+++++..... ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 456666789999999999988754211 12456778899999999999999999999886321 1233
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHH--
Q 005133 503 MDIYSTVLYHLKEDMKLSYLAQELITTDRL-----APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHT-- 572 (713)
Q Consensus 503 ~~~la~~l~~~g~~~~A~~~~~kal~~~p~-----~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~---~~a~~-- 572 (713)
+..++.+++..|++++|...+.+++..... ....+..+|.++...|++++|...+.++..+.... .....
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 456788899999999999999998875332 23556678899999999999999999997763321 11111
Q ss_pred --HHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHH
Q 005133 573 --LCGHEYVALEDFENGIRSYQSALRVDARHY----NSWYGLGMVYLRQEKFEFSEHHFRMAFQISP------HSSVIMS 640 (713)
Q Consensus 573 --~lg~~~~~~g~~eeAl~~~~~al~~~p~~~----~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p------~~~~~~~ 640 (713)
.....+...|+.+.|...+.......+... ..+..++.++...|++++|+..+++++.... ....++.
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 122445568899999998877654332222 1256789999999999999999999987632 2234778
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005133 641 YLGTAMHALKRSGEAIEMMEKAILADKKN 669 (713)
Q Consensus 641 ~la~~~~~~g~~eeAl~~l~kal~~~p~~ 669 (713)
.+|.++...|+.++|...+.+++++....
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 89999999999999999999999986544
No 113
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=1e-08 Score=106.06 Aligned_cols=233 Identities=11% Similarity=0.060 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh
Q 005133 468 VLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA-PQSWCAMGNCYSL 546 (713)
Q Consensus 468 ~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~-~~~~~~la~~~~~ 546 (713)
....-|..-+..|+|.+|.+...+.-+..+...-++..-+.+....|+.+.+-.++.++.+..+++ ..+....+.+...
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 344556666778999999999999999888888888888999999999999999999999985544 4677888999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------------
Q 005133 547 QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD---------------------------- 598 (713)
Q Consensus 547 ~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~---------------------------- 598 (713)
.|++..|..-..++++..|..+.+......+|...|++.+...++.+.-+..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999888887654321
Q ss_pred --------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005133 599 --------------ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAIL 664 (713)
Q Consensus 599 --------------p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~ 664 (713)
..++.....++.-+...|+.++|.+..+.+++..-+.. ....++ ...-++.+.=++..++.++
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHH
Confidence 12355566778888999999999999999998765433 222222 2345788888999999999
Q ss_pred hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 005133 665 ADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 665 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
..|+++..+..||..+++.+.|.+|..+|+.+++..|+.
T Consensus 323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 999999999999999999999999999999999998874
No 114
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.24 E-value=1.5e-10 Score=106.70 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=82.5
Q ss_pred HhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005133 562 QLN-PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMS 640 (713)
Q Consensus 562 ~~~-p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~ 640 (713)
.+. ++..+..+.+|..+...|++++|...|+-+..++|.+...|++||.++..+|+|++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 5666777777877888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC
Q 005133 641 YLGTAMHALKRSGEAIEMMEKAILAD 666 (713)
Q Consensus 641 ~la~~~~~~g~~eeAl~~l~kal~~~ 666 (713)
++|.|++..|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888888888777765
No 115
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.5e-08 Score=106.17 Aligned_cols=275 Identities=12% Similarity=0.064 Sum_probs=177.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~ 513 (713)
.++.-|.--..++++..|..+|+.++..+..+..+|...+.+-+..+....|...+.+++.+-|.-...|+.+..+-..+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 34444555567889999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCC--------------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005133 514 KEDMKLSYLAQELITTDRLA--------------------------------PQSWCAMGNCYSLQKDHETALKNFQRAV 561 (713)
Q Consensus 514 g~~~~A~~~~~kal~~~p~~--------------------------------~~~~~~la~~~~~~g~~~~Al~~~~kal 561 (713)
|+...|..+|++.++-.|+. ...|...+..-.+.|...-|..+|++|+
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999888887752 1233344444455566666666666665
Q ss_pred HhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHH------------------------------------------
Q 005133 562 QLNPRFA---YGHTLCGHEYVALEDFENGIRSYQSALR------------------------------------------ 596 (713)
Q Consensus 562 ~~~p~~~---~a~~~lg~~~~~~g~~eeAl~~~~~al~------------------------------------------ 596 (713)
+.-.++. ..+...|..-..+..++.|..+|+-|+.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 5433221 1222333333344445555555544442
Q ss_pred --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--------------------------------------
Q 005133 597 --VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS-------------------------------------- 636 (713)
Q Consensus 597 --~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~-------------------------------------- 636 (713)
.+|.+.++|+.+-.+....|+.+.-.+.|++|+...|...
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2466667777777777677777777777777776555421
Q ss_pred ----------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhH
Q 005133 637 ----------VIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGV 706 (713)
Q Consensus 637 ----------~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 706 (713)
.+|...|....++.+...|.+.+-.|+...|.+ ........+-.++++++.....|++.++..|.+-.+
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 122233333333334444444444444444321 222233344556667777777777777777776666
Q ss_pred HHh
Q 005133 707 YAL 709 (713)
Q Consensus 707 ~~~ 709 (713)
|..
T Consensus 474 W~k 476 (677)
T KOG1915|consen 474 WSK 476 (677)
T ss_pred HHH
Confidence 554
No 116
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=3.2e-09 Score=107.44 Aligned_cols=250 Identities=16% Similarity=0.103 Sum_probs=183.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 005133 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (713)
Q Consensus 436 l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~ 515 (713)
+..|++++..|+|++|+..|.-+...+.-++.++..+|.+++.+|.|.+|...-.++ |..+-....+-.+..++++
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence 345677788888888888888887776667788888888888888888887766654 5555555555566666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (713)
Q Consensus 516 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al 595 (713)
.++...+-+.+-+. .+-...+|.+.+..-.|++|+.+|.+++..+|+....-..++.+|.++.-|+-+.+.+.-.+
T Consensus 137 Ek~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 137 EKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 66655543333221 24456677788888899999999999999999988888889999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------HHHhCCC----CHHHHHHHH
Q 005133 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRM----------------------------AFQISPH----SSVIMSYLG 643 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~k----------------------------al~~~p~----~~~~~~~la 643 (713)
+..|+...+.+..+...++.=+-.-|...... |++.-|. -|++..+++
T Consensus 213 ~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 213 RQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred HhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 99999988888777776664222222221111 1222221 256778888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 644 TAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 644 ~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
..|.++++.++|+..++ +++|..|.-+...|.+...+|+--...+.++-+
T Consensus 293 iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred eeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 88999999999988776 478989999999999999888765555544433
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.23 E-value=2.6e-10 Score=105.21 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=75.5
Q ss_pred HHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 005133 527 ITTD-RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSW 605 (713)
Q Consensus 527 l~~~-p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~ 605 (713)
..+. ++.-+..+.+|..+...|++++|.+.|+-+..++|.+...|+.||.++..+|++++|+..|.+++.++|+++..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3445 555666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal~~~ 632 (713)
+++|.|++..|+.+.|++.|+.++...
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777777777777777777777776665
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.20 E-value=7.3e-09 Score=126.41 Aligned_cols=267 Identities=10% Similarity=-0.090 Sum_probs=202.3
Q ss_pred HHHHHHccCCHHHHHHHHHcCcccCCC-----CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 005133 438 EGYRMSCMYRCKDALDVYLKLPHKHYN-----TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS------LEGMDIY 506 (713)
Q Consensus 438 ~a~~l~~~g~~~eAi~~l~~~~~~~~~-----~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~------~~a~~~l 506 (713)
.+..+...|++++|...+++++...+. ...++..+|.++...|++++|...+++++...... ..++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 566677899999999999987653322 22456788999999999999999999998764321 2355677
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHH
Q 005133 507 STVLYHLKEDMKLSYLAQELITTDRL--------APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR-----FAYGHTL 573 (713)
Q Consensus 507 a~~l~~~g~~~~A~~~~~kal~~~p~--------~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~-----~~~a~~~ 573 (713)
+.++...|++.+|...++++++.... ....+..+|.++...|++++|...+.+++..... ...++..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 88999999999999999998875321 1234557788999999999999999999876321 2445667
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHH
Q 005133 574 CGHEYVALEDFENGIRSYQSALRVDARH---YNSWY----GLGMVYLRQEKFEFSEHHFRMAFQISPHSSV----IMSYL 642 (713)
Q Consensus 574 lg~~~~~~g~~eeAl~~~~~al~~~p~~---~~~~~----~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~----~~~~l 642 (713)
+|.++...|++++|...+.++..+.... ..... .....+...|+.+.|..++.......+.... .+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 8999999999999999999997763321 11111 1234455678999999998776543322222 24678
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Q 005133 643 GTAMHALKRSGEAIEMMEKAILADK------KNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (713)
Q Consensus 643 a~~~~~~g~~eeAl~~l~kal~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~ 704 (713)
|.++...|++++|+..+++++.... ....++..+|.++...|+.++|...+.+++++.....
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999987632 2245678899999999999999999999999876543
No 119
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=7.1e-07 Score=93.97 Aligned_cols=266 Identities=13% Similarity=0.076 Sum_probs=212.1
Q ss_pred ccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHh--hcHH---HHH-----HHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 444 CMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEV--VDYL---EAE-----RAFTLARRASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 444 ~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~--g~~~---eA~-----~~~~kal~~~p~~~~a~~~la~~l~~~ 513 (713)
.+..++.|..+|.-+++.-|..-.-....+...++. |+-. +++ --|++.+..+|.+.++|+.+..+....
T Consensus 256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV 335 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc
Confidence 356788999999988888776533223333333332 4432 333 247888999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q 005133 514 KEDMKLSYLAQELITTDRLAPQ---------SWCAMGNC-YSLQKDHETALKNFQRAVQLNPRF----AYGHTLCGHEYV 579 (713)
Q Consensus 514 g~~~~A~~~~~kal~~~p~~~~---------~~~~la~~-~~~~g~~~~Al~~~~kal~~~p~~----~~a~~~lg~~~~ 579 (713)
|+.+.....|++++..-|...+ .|...+.. -....+.+.+.++|+.++++-|.. +..|...|....
T Consensus 336 g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 336 GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 9999999999999998776432 22222221 235689999999999999998864 678999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005133 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMM 659 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l 659 (713)
++.+...|.+++-.|+...|.+ ..+.....+-.++++++....+|++-++..|.+..+|...|.+-..+|+.+.|..+|
T Consensus 416 Rq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999984 556666777788899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChh--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 660 EKAILADKKNPL--PMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 660 ~kal~~~p~~~~--~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
+-|+....-+.. .|......-...|.+++|...|++.++..+... +|...+
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA 547 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFA 547 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHH
Confidence 999976543332 344556667789999999999999999988755 776554
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=5.2e-09 Score=111.03 Aligned_cols=154 Identities=16% Similarity=0.073 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 497 PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGH 576 (713)
Q Consensus 497 p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~ 576 (713)
|....+++..+..++..|++++|...+..++...|+++..+...+.++...++..+|.+.+++++.++|.....+..+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005133 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAI 656 (713)
Q Consensus 577 ~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl 656 (713)
.|...|++.+|+..+...+..+|+++..|..|+..|..+|+..+|... .+..|+..|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 999999999999999999999999999999999999999988777654 455667779999999
Q ss_pred HHHHHHHHhCC
Q 005133 657 EMMEKAILADK 667 (713)
Q Consensus 657 ~~l~kal~~~p 667 (713)
..+.++.+...
T Consensus 446 ~~l~~A~~~~~ 456 (484)
T COG4783 446 IFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHhcc
Confidence 99999888763
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.17 E-value=5e-10 Score=116.68 Aligned_cols=231 Identities=11% Similarity=0.015 Sum_probs=175.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP--YSLEGMDIYSTVLY 511 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p--~~~~a~~~la~~l~ 511 (713)
..+-....++.+|+++.++.-+.... .| ...+...++..+...++-+.++..++..+.... .+.......|.++.
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~-~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLSEIKKSS--SP-ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TTS--SC-CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCChhHHHHHhccCC--Ch-hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 34445556688899888776654432 33 334455666665554566777777666543332 23445566677888
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHH
Q 005133 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE--DFENGIR 589 (713)
Q Consensus 512 ~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g--~~eeAl~ 589 (713)
..|++++|+.++++. .+.+.......+|...++++.|.+.++.+.+.+.+..-.....+++....| .+.+|..
T Consensus 114 ~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y 188 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFY 188 (290)
T ss_dssp CCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred HcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 889999999887664 567888888999999999999999999999888777777777777777766 5999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCC
Q 005133 590 SYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRS-GEAIEMMEKAILADKK 668 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~-eeAl~~l~kal~~~p~ 668 (713)
+|++.....+..+..++.++.+++.+|+|++|...+++++..+|++++++.+++.+...+|+. +.+.+++.+....+|+
T Consensus 189 ~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 189 IFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 999998888889999999999999999999999999999999999999999999999999998 6677888888888998
Q ss_pred ChhH
Q 005133 669 NPLP 672 (713)
Q Consensus 669 ~~~~ 672 (713)
++.+
T Consensus 269 h~~~ 272 (290)
T PF04733_consen 269 HPLV 272 (290)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 7755
No 122
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.7e-09 Score=107.20 Aligned_cols=218 Identities=15% Similarity=0.101 Sum_probs=182.4
Q ss_pred HHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005133 476 YFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALK 555 (713)
Q Consensus 476 ~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~ 555 (713)
+++..+|..|++++..-.+..|.+..++..+|.||++..++..|..+|+++-...|......+..+..+++.+.+..|++
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005133 556 NFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (713)
Q Consensus 556 ~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~ 635 (713)
+.......+.-.......-+.+.+..+++..+....++.- ..+++....+.|.+.++.|++++|++-|+.|++...-.
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 9887654322223445556667777888887776665532 12578889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCC-------------------------hhHHHHHHHHHHHcCCH
Q 005133 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILA----DKKN-------------------------PLPMYQKANILLSLEKF 686 (713)
Q Consensus 636 ~~~~~~la~~~~~~g~~eeAl~~l~kal~~----~p~~-------------------------~~~~~~la~~~~~~g~~ 686 (713)
+.+-++++.+++..|++..|+++..+.++. .|+. .+++...+.++++.|++
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence 999999999999999999999988877754 3321 23456678889999999
Q ss_pred HHHHHHHHH
Q 005133 687 DEALEVLEE 695 (713)
Q Consensus 687 ~eA~~~~~k 695 (713)
+.|.+.+..
T Consensus 258 eAA~eaLtD 266 (459)
T KOG4340|consen 258 EAAQEALTD 266 (459)
T ss_pred HHHHHHhhc
Confidence 999876543
No 123
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.13 E-value=9.5e-10 Score=118.56 Aligned_cols=111 Identities=13% Similarity=0.203 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005133 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK 617 (713)
Q Consensus 538 ~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~ 617 (713)
...|..++..|+|++|+.+|+++++++|.+..+|..+|.+|...|++++|+..+++++.++|+++.+++.+|.+|...|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHA 648 (713)
Q Consensus 618 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 648 (713)
|++|+..|+++++++|++..+...++.+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5555555555555555555555554444333
No 124
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.13 E-value=1.6e-07 Score=92.33 Aligned_cols=221 Identities=21% Similarity=0.228 Sum_probs=99.6
Q ss_pred CHHHHHHHHHcCcccCCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 005133 447 RCKDALDVYLKLPHKHYN--TGWVLSQVGKAYFEVVDYLEAERAFTLARR--ASPYSLEGMDIYSTVLYHLKEDMKLSYL 522 (713)
Q Consensus 447 ~~~eAi~~l~~~~~~~~~--~~~~~~~lg~~~~~~g~~~eA~~~~~kal~--~~p~~~~a~~~la~~l~~~g~~~~A~~~ 522 (713)
.+..+...+.......+. ........+..+...+++..++..+...+. ..+.....+...+......+.+..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444433332 234444455555555555555555555544 3444444444444444444444444444
Q ss_pred HHHHHHhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 005133 523 AQELITTDRLAPQSWCAMGN-CYSLQKDHETALKNFQRAVQLNP---RFAYGHTLCGHEYVALEDFENGIRSYQSALRVD 598 (713)
Q Consensus 523 ~~kal~~~p~~~~~~~~la~-~~~~~g~~~~Al~~~~kal~~~p---~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~ 598 (713)
+.+++...+.........+. ++...|+++.|...+.+++...| .....+...+..+...+++++|+..+.+++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 44444444443333333333 44444444444444444444333 122333333333444444444444444444444
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005133 599 AR-HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (713)
Q Consensus 599 p~-~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p 667 (713)
+. ....+..++..+...+++++|+..+..++...|.....+..++..+...+.++++...+.+++...|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 198 PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 44 3444444444444444444444444444444444333344444444433344444444444444444
No 125
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.13 E-value=4.6e-11 Score=100.65 Aligned_cols=75 Identities=29% Similarity=0.301 Sum_probs=64.6
Q ss_pred hhccchhhHHHHHhhhhcCCCc-h--hHHHHHHHHhhcCCHHHHHHHHhcC----CCcchhHHHHHHHhhcCChhHHHHh
Q 005133 14 RYFMYRNAIFLCERLCAEFPSE-V--NLQLLATCYLQNNQAYAAYNILKGT----QMALSRYLFAVACYQMDLLSEAEAA 86 (713)
Q Consensus 14 ~~~~~~~A~flaerl~a~~~~~-~--~~~llA~~~~~~~~~~~A~~~l~~~----~~~~~~~l~A~~~~~l~~~~ea~~~ 86 (713)
+++.|++|+++.+++++..|.+ + .++.||.|||+.|+|++|+.++++. .+..+.|++|+||+++|+|+||+.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5789999999999999999953 4 3555699999999999999999764 4679999999999999999999999
Q ss_pred hC
Q 005133 87 LS 88 (713)
Q Consensus 87 L~ 88 (713)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 85
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.12 E-value=1.4e-09 Score=117.27 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=82.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (713)
Q Consensus 571 ~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 650 (713)
+...|..++..|+|++|+.+|+++++++|+++.+++.+|.+|...|++++|+..+++++.++|.++.+++.+|.+++.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34456666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005133 651 RSGEAIEMMEKAILADKKNPLPMYQKANILLSL 683 (713)
Q Consensus 651 ~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~ 683 (713)
++++|+..|+++++++|+++.+...++.|...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 777777777777777777777777776665544
No 127
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.08 E-value=1.8e-07 Score=91.81 Aligned_cols=224 Identities=23% Similarity=0.279 Sum_probs=200.5
Q ss_pred hhcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005133 479 VVDYLEAERAFTLARRASPY--SLEGMDIYSTVLYHLKEDMKLSYLAQELIT--TDRLAPQSWCAMGNCYSLQKDHETAL 554 (713)
Q Consensus 479 ~g~~~eA~~~~~kal~~~p~--~~~a~~~la~~l~~~g~~~~A~~~~~kal~--~~p~~~~~~~~la~~~~~~g~~~~Al 554 (713)
.+.+..+...+...+...+. ........+..+...+....+...+..... ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 57788888999999888886 377888899999999999999999999987 68888899999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 555 KNFQRAVQLNPRFAYGHTLCGH-EYVALEDFENGIRSYQSALRVDA---RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 555 ~~~~kal~~~p~~~~a~~~lg~-~~~~~g~~eeAl~~~~~al~~~p---~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~ 630 (713)
..+..++...+.........+. ++...|+++.|+..|.+++...| .....+...+..+...+++++|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988877666666666 89999999999999999988776 4566777777888899999999999999999
Q ss_pred hCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 631 ISPH-SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 631 ~~p~-~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
..+. ....+..++..+...+++++|+..+..++...|.....+..++..+...|.++++...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999 68999999999999999999999999999999987778888888888888899999999999999886
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.05 E-value=4.4e-08 Score=99.67 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHH
Q 005133 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYG---HTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWY 606 (713)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a---~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~~~~~ 606 (713)
.+..++..|..+...|++++|++.|++++...|....+ .+.+|.+|...+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 44556666666666666666666666666666665433 3566666666666666666666666666654 34455
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCC
Q 005133 607 GLGMVYLRQE---------------K---FEFSEHHFRMAFQISPHSSV-----------------IMSYLGTAMHALKR 651 (713)
Q Consensus 607 ~lg~~y~~~g---------------~---~~eA~~~l~kal~~~p~~~~-----------------~~~~la~~~~~~g~ 651 (713)
.+|.++...+ + ..+|+..|++.++..|+... --..+|..|.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 6665543332 1 23566666666666666532 12467888999999
Q ss_pred hHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 652 SGEAIEMMEKAILADKKN---PLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 652 ~eeAl~~l~kal~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
|..|+.-++.+++..|+. .++++.++.+|..+|..++|..+....
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999999998865 567889999999999999998876543
No 129
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.02 E-value=6.8e-09 Score=92.97 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHH
Q 005133 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQK 676 (713)
Q Consensus 603 ~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~---~~~~~~l 676 (713)
..++.+|..+...|++++|+..|++++...|++ ..+++.+|.++...|++++|+.+|++++...|++ +.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 345556666666666666666666666655544 3455556666666666666666666666655553 3456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChhH
Q 005133 677 ANILLSLEKFDEALEVLEELKEYAPRESGV 706 (713)
Q Consensus 677 a~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 706 (713)
|.++...|++++|+.+++++++..|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666666666666666666666666665544
No 130
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.00 E-value=4.8e-08 Score=96.92 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYG 607 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~~~~~~ 607 (713)
+..++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.++...|++++|+..+++.++..|++ ..+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4556666666777777777777777776665543 3556666777777777777777777777766654 345666
Q ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCChHHHHHHH
Q 005133 608 LGMVYLRQE-----------KFEFSEHHFRMAFQISPHSSV-----------------IMSYLGTAMHALKRSGEAIEMM 659 (713)
Q Consensus 608 lg~~y~~~g-----------~~~eA~~~l~kal~~~p~~~~-----------------~~~~la~~~~~~g~~eeAl~~l 659 (713)
+|.+++.+. ...+|+..|+..+...|++.. --+.+|..|.+.|.+..|+..+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 666654432 234677777777777777632 1245788899999999999999
Q ss_pred HHHHHhCCCCh---hHHHHHHHHHHHcCCHHHHH
Q 005133 660 EKAILADKKNP---LPMYQKANILLSLEKFDEAL 690 (713)
Q Consensus 660 ~kal~~~p~~~---~~~~~la~~~~~~g~~~eA~ 690 (713)
+.+++..|+.+ .++..++.+|.++|..+.|.
T Consensus 165 ~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 165 QYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999998864 56788899999999988554
No 131
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.00 E-value=3.9e-08 Score=110.43 Aligned_cols=185 Identities=10% Similarity=0.076 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHcCcccCCC--CHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCCC
Q 005133 424 TGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYN--TGWVLSQVGKAYFEVV---DYLEAERAFTLARRASPY 498 (713)
Q Consensus 424 ~~~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~--~~~~~~~lg~~~~~~g---~~~eA~~~~~kal~~~p~ 498 (713)
...+.+..+...+.....-.-...+..+...--. ...|. .++-++..|..|+..+ +...|+.+|+++++++|+
T Consensus 297 ~~~~dif~vQdei~~~Ia~aL~~~l~~~e~~~~~--~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~ 374 (517)
T PRK10153 297 LTNGNQLSVQNDLSNSLSRALNQPWPERMQERLQ--QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD 374 (517)
T ss_pred CChhhHHHHHHHHHHHHHHHhCccccHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC
Confidence 3444555555544433332223334333322211 22333 4555677777776654 488999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 005133 499 SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL--NPRFAYGHTLCGH 576 (713)
Q Consensus 499 ~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~--~p~~~~a~~~lg~ 576 (713)
+..++..++.++.....+. +. ...+...+.+...+++.+ ++.++.++..+|.
T Consensus 375 ~a~a~A~la~~~~~~~~~~-------------~~-------------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~ 428 (517)
T PRK10153 375 FTYAQAEKALADIVRHSQQ-------------PL-------------DEKQLAALSTELDNIVALPELNVLPRIYEILAV 428 (517)
T ss_pred cHHHHHHHHHHHHHHHhcC-------------Cc-------------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHH
Confidence 9888888777664432111 00 001233444444554443 5555566666666
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005133 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV 637 (713)
Q Consensus 577 ~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~ 637 (713)
.+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 429 ~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 429 QALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 66666777777777777777766 3566667777777777777777777777777666654
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.99 E-value=1.1e-08 Score=91.74 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 005133 570 GHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLG 643 (713)
Q Consensus 570 a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la 643 (713)
.++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+.+|++++...|++ +.++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555555555555555555555555555443 3445555555555555555555555555555443 34455555
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChh
Q 005133 644 TAMHALKRSGEAIEMMEKAILADKKNPL 671 (713)
Q Consensus 644 ~~~~~~g~~eeAl~~l~kal~~~p~~~~ 671 (713)
.++...|++++|+.++++++...|++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555555555555555555555555443
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.98 E-value=7e-08 Score=95.73 Aligned_cols=175 Identities=17% Similarity=0.163 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHH
Q 005133 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS---LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP---QSWC 538 (713)
Q Consensus 465 ~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~---~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~---~~~~ 538 (713)
.+..++..|..++..|+|.+|++.|++++...|.. ..+.+.++.+++..|++.+|+..+++.++..|.++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45677888888888888888888888888887754 45566666666666666666666666666666544 4666
Q ss_pred HHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005133 539 AMGNCYSLQKD-----------HETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYG 607 (713)
Q Consensus 539 ~la~~~~~~g~-----------~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~ 607 (713)
.+|.++..... ..+|+..|+..+...|+...+- +|...+..+-. .-..--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHH
Confidence 66666655421 2245555555555555543221 11111111000 00122446
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHH
Q 005133 608 LGMVYLRQEKFEFSEHHFRMAFQISPHSS---VIMSYLGTAMHALKRSGEAI 656 (713)
Q Consensus 608 lg~~y~~~g~~~eA~~~l~kal~~~p~~~---~~~~~la~~~~~~g~~eeAl 656 (713)
+|..|.+.|.|..|+..++.+++..|+.. +++..++.+|.++|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 78888888899999999999988888875 46778888888888877543
No 134
>PRK11906 transcriptional regulator; Provisional
Probab=98.98 E-value=4.7e-08 Score=104.51 Aligned_cols=133 Identities=14% Similarity=0.028 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhh---cHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHhCCC
Q 005133 468 VLSQVGKAYFEVV---DYLEAERAFTLAR---RASPYSLEGMDIYSTVLYHLK---------EDMKLSYLAQELITTDRL 532 (713)
Q Consensus 468 ~~~~lg~~~~~~g---~~~eA~~~~~kal---~~~p~~~~a~~~la~~l~~~g---------~~~~A~~~~~kal~~~p~ 532 (713)
-++..|...+..+ ..+.|+.+|.+++ +++|....++..++.|++... ...+|..+.+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4577777776653 5678888899999 888888888888888876541 122334444444444444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 005133 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600 (713)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~ 600 (713)
++.++..+|.++...++++.|+..|++++.++|+.+.+|+..|.+....|+.++|++.++++++++|.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 44444444444444444444444444444444444444444444444444444444444444444444
No 135
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.6e-08 Score=102.25 Aligned_cols=118 Identities=22% Similarity=0.245 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 005133 550 HETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE---KFEFSEHHFR 626 (713)
Q Consensus 550 ~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g---~~~eA~~~l~ 626 (713)
.++-+.-++.-+..+|++..-|..||.+|+.+|+++.|...|.+++++.|++++.+..+|.+++.+. ...++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4444444555555555555555555555555555555555555555555555555555555544432 2344555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005133 627 MAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (713)
Q Consensus 627 kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p 667 (713)
++++.+|.+..+.+.||..++..|+|.+|+..++..++..|
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 55555555555555555555555555555555555555444
No 136
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.98 E-value=6.5e-09 Score=87.42 Aligned_cols=97 Identities=27% Similarity=0.380 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005133 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE 684 (713)
Q Consensus 605 ~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g 684 (713)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45555666666666666666666666666555555666666666666666666666666666655556666666666666
Q ss_pred CHHHHHHHHHHHHHHCC
Q 005133 685 KFDEALEVLEELKEYAP 701 (713)
Q Consensus 685 ~~~eA~~~~~kal~l~P 701 (713)
++++|..++.++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666655554
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.97 E-value=3e-08 Score=95.72 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (713)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg 609 (713)
...+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.++++++...|.+...+..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34556667777777777777777777777665442 346666777777777777777777777777776666666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005133 610 MVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669 (713)
Q Consensus 610 ~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~ 669 (713)
.+|...|+...+...+++++. .+++|++++++++..+|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 777666666665555554432 2556666666666666654
No 138
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.97 E-value=4.2e-08 Score=99.85 Aligned_cols=267 Identities=17% Similarity=0.079 Sum_probs=200.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCC---CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC------CHHHHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHY---NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY------SLEGMD 504 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~---~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~------~~~a~~ 504 (713)
..+.+|..++...++++|+..+.+.+..-. .....+-.+..+..++|.|++++.+--..+...-+ ..+++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999999999999988765432 24446667788889999999988876555543221 246677
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C----HHHHHH
Q 005133 505 IYSTVLYHLKEDMKLSYLAQELITTDRLAP-----QSWCAMGNCYSLQKDHETALKNFQRAVQLNPR--F----AYGHTL 573 (713)
Q Consensus 505 ~la~~l~~~g~~~~A~~~~~kal~~~p~~~-----~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~--~----~~a~~~ 573 (713)
.++..+..+.++.+++.+-...+.+....+ .....+|..+..++.++++++.|++|++..-. + ..++..
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 788888888888888887777666543333 56777999999999999999999999987332 2 356788
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC----CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHH
Q 005133 574 CGHEYVALEDFENGIRSYQSALRVDA----RH------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP------HSSV 637 (713)
Q Consensus 574 lg~~~~~~g~~eeAl~~~~~al~~~p----~~------~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p------~~~~ 637 (713)
+|.+|....++++|+-+..++.++-. ++ ..+++.++..+..+|..-.|.++.+++.++.- -...
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar 247 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR 247 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999999999988632 12 34578889999999999999999999887632 2244
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHC
Q 005133 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKK------NPLPMYQKANILLSLEKFDE-----ALEVLEELKEYA 700 (713)
Q Consensus 638 ~~~~la~~~~~~g~~eeAl~~l~kal~~~p~------~~~~~~~la~~~~~~g~~~e-----A~~~~~kal~l~ 700 (713)
.+..+|.+|...|+.+.|..-|+.|...... ...++...|.++....-..+ |++.-++++++.
T Consensus 248 c~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA 321 (518)
T KOG1941|consen 248 CLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVA 321 (518)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 5677999999999999999999999865321 34555666666654443333 777777777654
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.97 E-value=1.5e-07 Score=95.79 Aligned_cols=182 Identities=10% Similarity=0.078 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHH
Q 005133 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGM---DIYSTVLYHLKEDMKLSYLAQELITTDRLAP---QSW 537 (713)
Q Consensus 464 ~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~---~~la~~l~~~g~~~~A~~~~~kal~~~p~~~---~~~ 537 (713)
..+..++..|..++..|+|++|++.|++++...|....+. ..+|.+++..+++.+|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4666778888888888999999999999998888775443 6677777777777777777777777776654 566
Q ss_pred HHHHHHHHhcC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 005133 538 CAMGNCYSLQK---------------D---HETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA 599 (713)
Q Consensus 538 ~~la~~~~~~g---------------~---~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p 599 (713)
+.+|.++...+ + ..+|+..|++.++..|+...+- +|...+..+-.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHHHH---
Confidence 66676643332 1 2456677777777777654321 11111111100
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005133 600 RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKA 662 (713)
Q Consensus 600 ~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~~~~~~g~~eeAl~~l~ka 662 (713)
.-..--+.+|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|..+....
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 012233467888889999999999999999888775 457888899999999999988776543
No 140
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=1.2e-07 Score=110.56 Aligned_cols=211 Identities=10% Similarity=-0.006 Sum_probs=102.2
Q ss_pred HHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-CC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 454 VYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRAS-PY----SLEGMDIYSTVLYHLKEDMKLSYLAQELIT 528 (713)
Q Consensus 454 ~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~-p~----~~~a~~~la~~l~~~g~~~~A~~~~~kal~ 528 (713)
-|++++..+|+....|......+++.++.++|.+.+++|+..- +. -...|..+..+....|..+...+.|+++.+
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555555321 11 122333333333333444444444554444
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHH
Q 005133 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR--HYNSWY 606 (713)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~--~~~~~~ 606 (713)
... ...+|..|..+|...+++++|.++|+..++...+....|..+|..++.+.+-++|...+.+|++.-|. +.....
T Consensus 1526 ycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1526 YCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred hcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 321 12344444555555555555555555555544444455555555555555555555555555555444 444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 607 GLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 607 ~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
..|.+-++.|+.+.+..+|+..+...|.-.++|.-+...-.+.|+.+.++..|++++.+
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 45555555555555555555555555555555555555555555555555555555543
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=4.4e-07 Score=89.45 Aligned_cols=252 Identities=15% Similarity=0.128 Sum_probs=184.9
Q ss_pred HccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 005133 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYL 522 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~ 522 (713)
+-.|.|..++..-++..... .......++.+.|..+|.+...+.-....- .....+...++..+..-++.++-+.-
T Consensus 19 fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 34667888888887765443 667778889999999999876655444332 12234445555555555555544443
Q ss_pred -HHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 005133 523 -AQELITTDRLAP-QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600 (713)
Q Consensus 523 -~~kal~~~p~~~-~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~ 600 (713)
.+......-... .....-|.+|...+++++|++...+. ...++...-..++.+..+++-|...++++.+++.+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 344443333333 34445578899999999999988773 34566667778889999999999999999888755
Q ss_pred CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005133 601 HYNSWYGLGMVYLRQ----EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676 (713)
Q Consensus 601 ~~~~~~~lg~~y~~~----g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~l 676 (713)
..+..||..+... +++.+|.-+|++.-+..|..+..+..++.|+..+|+|++|...++.++..++++++.+.++
T Consensus 170 --~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 --ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred --HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 3444455555432 4789999999999888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHH-HHHHHHHHCCCChh
Q 005133 677 ANILLSLEKFDEALE-VLEELKEYAPRESG 705 (713)
Q Consensus 677 a~~~~~~g~~~eA~~-~~~kal~l~P~~~~ 705 (713)
..+-...|...++.. .+.+.....|+.+-
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 999999998766654 55566667777653
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.94 E-value=3.5e-08 Score=110.83 Aligned_cols=144 Identities=10% Similarity=0.010 Sum_probs=93.2
Q ss_pred HHhCCCCHHHHH--HHHHHHHhcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHH
Q 005133 527 ITTDRLAPQSWC--AMGNCYSLQKD---HETALKNFQRAVQLNPRFAYGHTLCGHEYVALE--------DFENGIRSYQS 593 (713)
Q Consensus 527 l~~~p~~~~~~~--~la~~~~~~g~---~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g--------~~eeAl~~~~~ 593 (713)
....|.+..+|- ..|..|...++ ..+|+.+|+++++++|+++.+|..++.+|.... +...+....++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 344556655543 34555554433 667888888888888888877777777664431 23445555555
Q ss_pred HHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 005133 594 ALRV--DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPL 671 (713)
Q Consensus 594 al~~--~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~ 671 (713)
++.+ +|.++.++..+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 4443 555566666677776667777777777777777776 3566777777777777777777777777777776664
No 143
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.94 E-value=2.9e-08 Score=95.75 Aligned_cols=119 Identities=17% Similarity=0.286 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 566 RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYL 642 (713)
Q Consensus 566 ~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 642 (713)
....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+.++++++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456678899999999999999999999999887653 46889999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Q 005133 643 GTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (713)
Q Consensus 643 a~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~ 704 (713)
|.++...|+...|...+++++. .+++|++++++++.++|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 9999999988888777766543 37889999999999999863
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.94 E-value=1.4e-08 Score=85.39 Aligned_cols=96 Identities=25% Similarity=0.485 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE 616 (713)
Q Consensus 537 ~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g 616 (713)
++.+|.++...|++++|+..++++++..|....++..+|.++...+++++|+.+|++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHHhC
Q 005133 617 KFEFSEHHFRMAFQIS 632 (713)
Q Consensus 617 ~~~eA~~~l~kal~~~ 632 (713)
++++|...+.++++..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 4444444444444433
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.6e-08 Score=100.67 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHH
Q 005133 584 FENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK---RSGEAIEMME 660 (713)
Q Consensus 584 ~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g---~~eeAl~~l~ 660 (713)
.+..+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+|+++.|++++++..+|.+++... ...++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4555566666666677777777777777777777777777777777777777777777766666553 3456667777
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Q 005133 661 KAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (713)
Q Consensus 661 kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~ 704 (713)
+++..+|.++.+.+.||..+++.|+|.+|...++.+++..|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77777777777777777777777777777777777776665543
No 146
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.93 E-value=6.9e-08 Score=100.97 Aligned_cols=206 Identities=15% Similarity=0.176 Sum_probs=131.4
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 005133 470 SQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKD 549 (713)
Q Consensus 470 ~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 549 (713)
...|.+|...++|++|.++|.++... +...++...+. ..+...+.+|... +
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~--------------~~~~~~~~~Aa--------------~~~~~Aa~~~k~~-~ 89 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADC--------------YEKLGDKFEAA--------------KAYEEAANCYKKG-D 89 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHH--------------HHHTT-HHHHH--------------HHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHH--------------HHHcCCHHHHH--------------HHHHHHHHHHHhh-C
Confidence 34567777777888887777777543 22333333322 2344445555444 7
Q ss_pred HHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcC
Q 005133 550 HETALKNFQRAVQLNP--R----FAYGHTLCGHEYVAL-EDFENGIRSYQSALRVDAR--H----YNSWYGLGMVYLRQE 616 (713)
Q Consensus 550 ~~~Al~~~~kal~~~p--~----~~~a~~~lg~~~~~~-g~~eeAl~~~~~al~~~p~--~----~~~~~~lg~~y~~~g 616 (713)
+++|+.+|++++.+.- + -+..+..+|.+|... |++++|+++|++|+++... . ..++..+|.++...|
T Consensus 90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 7788888887776521 1 135677788888888 8999999999999886321 1 346778899999999
Q ss_pred CHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh-----HHHHHHHHHH--H
Q 005133 617 KFEFSEHHFRMAFQISPHS-------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPL-----PMYQKANILL--S 682 (713)
Q Consensus 617 ~~~eA~~~l~kal~~~p~~-------~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~-----~~~~la~~~~--~ 682 (713)
+|++|++.|+++....-+. ...+...+.|+...|++..|...+++....+|.... ....+..++. .
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 9999999999887753221 134566788888899999999999998888875433 2333444443 3
Q ss_pred cCCHHHHHHHHHHHHHHCCCCh
Q 005133 683 LEKFDEALEVLEELKEYAPRES 704 (713)
Q Consensus 683 ~g~~~eA~~~~~kal~l~P~~~ 704 (713)
...+.+|+..|++..++++-..
T Consensus 250 ~e~f~~av~~~d~~~~ld~w~~ 271 (282)
T PF14938_consen 250 VEAFTEAVAEYDSISRLDNWKT 271 (282)
T ss_dssp CCCHHHHCHHHTTSS---HHHH
T ss_pred HHHHHHHHHHHcccCccHHHHH
Confidence 4568888888887777766433
No 147
>PRK11906 transcriptional regulator; Provisional
Probab=98.93 E-value=6.4e-08 Score=103.54 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 005133 516 DMKLSYLAQELI---TTDRLAPQSWCAMGNCYSLQ---------KDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALED 583 (713)
Q Consensus 516 ~~~A~~~~~kal---~~~p~~~~~~~~la~~~~~~---------g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~ 583 (713)
...|..++.+++ +++|+...+|..++.+++.. .+..+|.+..+++++++|.++.++..+|.++...++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 456677788888 78888888888877776643 234567777778888888888888888887777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 005133 584 FENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA-MHALKRSGEAIEMMEK 661 (713)
Q Consensus 584 ~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~-~~~~g~~eeAl~~l~k 661 (713)
++.|+..|++++.++|+.+.+|+..|.+....|+.++|++.++++++++|.-..+-...-++ .+--...++|+..|-+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 88888888888888888888888888888888888888888888888877765544333333 3344556667766654
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.93 E-value=2.2e-08 Score=96.30 Aligned_cols=98 Identities=11% Similarity=0.180 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 005133 550 HETALKNFQRAVQLNPRF--AYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEFSEHH 624 (713)
Q Consensus 550 ~~~Al~~~~kal~~~p~~--~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~~~~~~lg~~y~~~g~~~eA~~~ 624 (713)
+..+...+...++..+.+ ...|+.+|.++...|++++|+..|++++.+.|+. ..++..+|.+|...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444343333 4455666777777777777777777776665542 34666777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Q 005133 625 FRMAFQISPHSSVIMSYLGTAMH 647 (713)
Q Consensus 625 l~kal~~~p~~~~~~~~la~~~~ 647 (713)
|++++.+.|.....+..+|.++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHH
Confidence 77777777766666666666666
No 149
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=5.6e-07 Score=105.19 Aligned_cols=219 Identities=17% Similarity=0.089 Sum_probs=196.8
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC----CHHHHHHHHHHHHhcCCHHHHHH
Q 005133 481 DYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTD-RL----APQSWCAMGNCYSLQKDHETALK 555 (713)
Q Consensus 481 ~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~-p~----~~~~~~~la~~~~~~g~~~~Al~ 555 (713)
+-.+..+.|++.+..+|+..-.|..|......+++.++|...+++++..- +. -..+|..+-++...-|.-+...+
T Consensus 1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 34456788999999999999999999999999999999999999999743 32 23578777777777888888999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 005133 556 NFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH- 634 (713)
Q Consensus 556 ~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~- 634 (713)
.|++|-+.. +...+|..|..+|...+++++|.++|+..++........|..+|..++++.+-+.|...+.+|++.-|.
T Consensus 1519 VFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1519 VFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 999998864 335678889999999999999999999999998888999999999999999999999999999999998
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 635 -SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 635 -~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
+..+....|.+.++.|+.+.+...|+-.+..+|...+.|..+.+.-.+.|+.+.++..|++++.+.
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 777888999999999999999999999999999999999999999999999999999999998854
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.88 E-value=8e-08 Score=89.92 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=76.1
Q ss_pred HccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChH
Q 005133 580 ALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSG 653 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~~~p~~---~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~~~~~~g~~e 653 (713)
..++...+...+++.+...|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ..+...+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666677777666665 3456666777777777777777777777665443 235566777777777777
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 654 EAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELK 697 (713)
Q Consensus 654 eAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal 697 (713)
+|+..++. +...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77777755 22233345566677777777777777777777653
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.86 E-value=9.6e-09 Score=82.79 Aligned_cols=66 Identities=29% Similarity=0.341 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCC
Q 005133 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE-KFDEALEVLEELKEYAP 701 (713)
Q Consensus 636 ~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~kal~l~P 701 (713)
+.+|..+|.+++..|++++|+.+|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4445555555555555555555555555555555555555555555555 45555555555555554
No 152
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.85 E-value=4.3e-08 Score=94.20 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=100.4
Q ss_pred cCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHH
Q 005133 582 EDFENGIRSYQSALRVDARH--YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAI 656 (713)
Q Consensus 582 g~~eeAl~~~~~al~~~p~~--~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~~~~~~g~~eeAl 656 (713)
..+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 33555566665555555544 6678999999999999999999999999887663 458999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHHCCCC
Q 005133 657 EMMEKAILADKKNPLPMYQKANILL-------SLEKFD-------EALEVLEELKEYAPRE 703 (713)
Q Consensus 657 ~~l~kal~~~p~~~~~~~~la~~~~-------~~g~~~-------eA~~~~~kal~l~P~~ 703 (713)
.+|++++.+.|.....+..+|.++. .+|+++ +|+.+|++++..+|++
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9999999999999999989998888 777876 6666667788888853
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.85 E-value=1.2e-08 Score=82.21 Aligned_cols=63 Identities=22% Similarity=0.519 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 005133 570 GHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE-KFEFSEHHFRMAFQIS 632 (713)
Q Consensus 570 a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g-~~~eA~~~l~kal~~~ 632 (713)
.|..+|.++...|++++|+.+|+++++++|+++.+++.+|.+|..+| ++++|++.++++++++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 33344444444444444444444444444444444444444444443 3444444444444333
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.84 E-value=1.3e-07 Score=88.40 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=89.9
Q ss_pred hcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHH
Q 005133 546 LQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFE 619 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~~~~~~lg~~y~~~g~~~ 619 (713)
..++...+...+++.+...|+. ..+.+.+|.+++..|++++|+..|++++...|+. ..+.+.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4677888888888888888777 4556778888888888888888888888876554 346777888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005133 620 FSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 620 eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal 663 (713)
+|+..++. +...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888866 23334455677788888888888888888888764
No 155
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.82 E-value=4.8e-06 Score=86.04 Aligned_cols=259 Identities=11% Similarity=-0.028 Sum_probs=124.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~ 513 (713)
.++-.+...+-.|+|+.|.+-|+.++........-+..+-......|+.+.|+.+-+.+.+..|.-..++..........
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~ 201 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA 201 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence 34444555555555555555555554432221111112222222345555555555555555555555555555555555
Q ss_pred cCHHHHHHHHHHHHHh---CCCCH---HHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 005133 514 KEDMKLSYLAQELITT---DRLAP---QSWCAMGNCY-SLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFEN 586 (713)
Q Consensus 514 g~~~~A~~~~~kal~~---~p~~~---~~~~~la~~~-~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~ee 586 (713)
|+++.|+++.+..... .++.. .+-..-+... ...-+...|.....++.++.|+...+-..-+..++..|+..+
T Consensus 202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rK 281 (531)
T COG3898 202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRK 281 (531)
T ss_pred CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhh
Confidence 5555555555443321 11111 1111111111 112245555555555555555555555555555566666666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005133 587 GIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFR---MAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 587 Al~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~---kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal 663 (713)
+-.+++.+.+..|. +.++ +.+++.+.|+ .++.-++ +...+.|++.+.....+..-+.-|++..|..--+.+.
T Consensus 282 g~~ilE~aWK~ePH-P~ia--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 282 GSKILETAWKAEPH-PDIA--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hhhHHHHHHhcCCC-hHHH--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 66666665555554 2221 1122223332 2222222 2233455555555566666666666666666666666
Q ss_pred HhCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 005133 664 LADKKNPLPMYQKANILLSL-EKFDEALEVLEELKE 698 (713)
Q Consensus 664 ~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~kal~ 698 (713)
...|. ..++..++.+.... |+-.++..++.++++
T Consensus 357 r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 357 REAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 55553 34445555555443 666666666666554
No 156
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.80 E-value=4.4e-09 Score=106.07 Aligned_cols=233 Identities=11% Similarity=-0.035 Sum_probs=173.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
+-.+|..++.+|+|++||++|.+.+..+|.++..+.+.|.+|+.++.|..|...+..++.++..+..+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---------HHHHHHHHHccCHH
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGH---------TLCGHEYVALEDFE 585 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~---------~~lg~~~~~~g~~e 585 (713)
...+|...++.++++.|...+..-.++.+-. ..++ +-+.+..|....+. ..-|..+...|.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 9999999999999999997766555544432 1111 11122222222221 12355667777888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 586 NGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 586 eAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
.++.++-+.+..+.++...-.. +..|.+.-++++|+....+++-.+|........-+.+..-.|...++...++.++.+
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 8888887766655544433333 666777778888888877777776665555555555555567777777888888877
Q ss_pred CCCChhHHHHH
Q 005133 666 DKKNPLPMYQK 676 (713)
Q Consensus 666 ~p~~~~~~~~l 676 (713)
.|.+..+...+
T Consensus 331 ~P~~~~~~~~~ 341 (536)
T KOG4648|consen 331 APAVETPKETE 341 (536)
T ss_pred ccccccchhhh
Confidence 77665444333
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.80 E-value=1.1e-08 Score=86.18 Aligned_cols=80 Identities=29% Similarity=0.436 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 005133 615 QEKFEFSEHHFRMAFQISPH--SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEV 692 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~~~p~--~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 692 (713)
+|+|+.|+.+++++++..|. +...++.+|.+|++.|++++|+.++++ ...++.+...++.+|.++.++|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34555555555555555553 233444455555555555555555555 444444455555555555555555555555
Q ss_pred HHH
Q 005133 693 LEE 695 (713)
Q Consensus 693 ~~k 695 (713)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 158
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.80 E-value=3.2e-07 Score=93.62 Aligned_cols=231 Identities=14% Similarity=0.131 Sum_probs=180.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHH
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARRASPYS---LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRL------APQSWCA 539 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~---~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~------~~~~~~~ 539 (713)
....|.-++...++++|+..+.+.+..-.+. ...+-.+..+....|.+++++...--.++...+ ..+++..
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln 88 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN 88 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888899999999999988765433 333444556778888888877655444433221 2367888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 005133 540 MGNCYSLQKDHETALKNFQRAVQLNPR-----FAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYGL 608 (713)
Q Consensus 540 la~~~~~~g~~~~Al~~~~kal~~~p~-----~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~------~~~~~~l 608 (713)
++..+...-++.+++.+-...+.+... ...+...+|..+..++.++++++.|++++++.-+. ..++..|
T Consensus 89 lar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~L 168 (518)
T KOG1941|consen 89 LARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSL 168 (518)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhH
Confidence 999999999999999999888876322 24677789999999999999999999999874332 3568899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChhH
Q 005133 609 GMVYLRQEKFEFSEHHFRMAFQISPH----S------SVIMSYLGTAMHALKRSGEAIEMMEKAILADK------KNPLP 672 (713)
Q Consensus 609 g~~y~~~g~~~eA~~~l~kal~~~p~----~------~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p------~~~~~ 672 (713)
|..+....++++|+.+..+|.++... + ..+++.++..+..+|+...|.++++++.++.- -....
T Consensus 169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc 248 (518)
T KOG1941|consen 169 GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARC 248 (518)
T ss_pred HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHH
Confidence 99999999999999999999877422 1 23677899999999999999999999987632 23455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005133 673 MYQKANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~~~kal~l 699 (713)
..-+|+||...|+.+.|..-|+.+...
T Consensus 249 ~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 249 LLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 678999999999999999999998764
No 159
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.1e-07 Score=99.25 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~ 613 (713)
+......|..|++.|+|..|...|++++..-.... .-+.++.... .++ ...++.+++.||.
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~--~~~-----k~~~~lNlA~c~l 268 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKA--EAL-----KLACHLNLAACYL 268 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHH--HHH-----HHHHhhHHHHHHH
Confidence 44556678888888888888888888776522110 0000000000 000 1234556666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH-HHH
Q 005133 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEA-LEV 692 (713)
Q Consensus 614 ~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA-~~~ 692 (713)
++++|.+|+..+.++|.++|++..+++..|.++..+|+|+.|+..|+++++++|.+..+...+..+..+..++.+. .+.
T Consensus 269 Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 269 KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666655555444433 555
Q ss_pred HHHHHHHC
Q 005133 693 LEELKEYA 700 (713)
Q Consensus 693 ~~kal~l~ 700 (713)
|.+++...
T Consensus 349 y~~mF~k~ 356 (397)
T KOG0543|consen 349 YANMFAKL 356 (397)
T ss_pred HHHHhhcc
Confidence 55555543
No 160
>PRK15331 chaperone protein SicA; Provisional
Probab=98.78 E-value=6.8e-08 Score=89.66 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=88.6
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 563 LNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYL 642 (713)
Q Consensus 563 ~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 642 (713)
+.++.-+..+..|.-++..|++++|...|+-....+|.+++.|+.||.++..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34455567788888888899999999999988888888888899999999999999999999999888888888888889
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 005133 643 GTAMHALKRSGEAIEMMEKAIL 664 (713)
Q Consensus 643 a~~~~~~g~~eeAl~~l~kal~ 664 (713)
|.|+..+|+.+.|+..|+.++.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999988887
No 161
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.77 E-value=2.9e-06 Score=92.50 Aligned_cols=266 Identities=14% Similarity=0.065 Sum_probs=190.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHcCcccCC---C-----CHHHHHHHHHHHHHhh-------------cHHHHHHHHHHHHH
Q 005133 436 LGEGYRMSCMYRCKDALDVYLKLPHKHY---N-----TGWVLSQVGKAYFEVV-------------DYLEAERAFTLARR 494 (713)
Q Consensus 436 l~~a~~l~~~g~~~eAi~~l~~~~~~~~---~-----~~~~~~~lg~~~~~~g-------------~~~eA~~~~~kal~ 494 (713)
...|..+++.|.++.|.++|++++..-- + +..+.+.--.+...++ +++-.+..|+..+.
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 3456667899999999999999865321 1 2222222222222222 33444555665544
Q ss_pred ------------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHhcCCHHHHHHH
Q 005133 495 ------------ASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELIT-TDRLA-----PQSWCAMGNCYSLQKDHETALKN 556 (713)
Q Consensus 495 ------------~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~-~~p~~-----~~~~~~la~~~~~~g~~~~Al~~ 556 (713)
.+|++.+-|.... -...|+..+-+..|.+++. .+|.. ...|..+|..|...|+.+.|...
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 3555555554443 3445677777888877775 45543 36899999999999999999999
Q ss_pred HHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHH
Q 005133 557 FQRAVQLNPRF----AYGHTLCGHEYVALEDFENGIRSYQSALRVDAR------------------HYNSWYGLGMVYLR 614 (713)
Q Consensus 557 ~~kal~~~p~~----~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~------------------~~~~~~~lg~~y~~ 614 (713)
|+++.+..-.. +.+|...|..-....+++.|+.++++|...-.. ...+|..++.....
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 99999874332 577888998889999999999999998765211 23467788888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHH---HHHHHHHcCCHHHH
Q 005133 615 QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD--KKNPLPMYQ---KANILLSLEKFDEA 689 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~--p~~~~~~~~---la~~~~~~g~~~eA 689 (713)
.|-++.....|++++.+.--.|.+..+.|..+....-+++|.+.|++.+.+. |.-.++|.. ....-+..-..+.|
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8999999999999999988889999999999999999999999999998885 333444432 22223344478899
Q ss_pred HHHHHHHHHHCCCC
Q 005133 690 LEVLEELKEYAPRE 703 (713)
Q Consensus 690 ~~~~~kal~l~P~~ 703 (713)
...|+++++..|..
T Consensus 570 RdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 570 RDLFEQALDGCPPE 583 (835)
T ss_pred HHHHHHHHhcCCHH
Confidence 99999999988853
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.74 E-value=2.2e-07 Score=95.28 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=54.2
Q ss_pred HHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 005133 569 YGHTLCGHEY-VALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSY 641 (713)
Q Consensus 569 ~a~~~lg~~~-~~~g~~eeAl~~~~~al~~~p~~---~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~ 641 (713)
..++..+..+ ...|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444443 33455555555555555555554 3455555555555555555555555555554442 345555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005133 642 LGTAMHALKRSGEAIEMMEKAILADKKNP 670 (713)
Q Consensus 642 la~~~~~~g~~eeAl~~l~kal~~~p~~~ 670 (713)
+|.++..+|++++|+..|+++++..|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 55555555555555555555555555443
No 163
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.74 E-value=1.8e-05 Score=81.93 Aligned_cols=271 Identities=15% Similarity=0.069 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCccc--CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 433 LRILGEGYRMSCMYRCKDALDVYLKLPHK--HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVL 510 (713)
Q Consensus 433 l~~l~~a~~l~~~g~~~eAi~~l~~~~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l 510 (713)
+..|..|......|+-..|.++-.+.-+. ....+.+...-++.....|+|+.|.+-|+.++..-....-.+..+..-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleA 164 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHH
Confidence 45566677777888888888888765422 2345667778888889999999999999998864333334444555556
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCH-----HHHHHHHHHHHHcc
Q 005133 511 YHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL---NPRFA-----YGHTLCGHEYVALE 582 (713)
Q Consensus 511 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~---~p~~~-----~a~~~lg~~~~~~g 582 (713)
..+|..+.|..+.+++....|.-+.++...-...+..|+|+.|+++.+..... .++.. ..+...+... ..-
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcC
Confidence 67899999999999999999999999999889999999999999999876543 23221 1222223322 234
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005133 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKA 662 (713)
Q Consensus 583 ~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~ka 662 (713)
+...|...-.++.++.|+...+-..-+..+++.|+..++-.+++.+.+..|+-. ++.+|....--+-++.-++++
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRARSGDTALDRLKRA 318 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHhcCCCcHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999988642 445555555555555555554
Q ss_pred ---HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhc
Q 005133 663 ---ILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALM 710 (713)
Q Consensus 663 ---l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~L 710 (713)
..+.|++.+..+..+...+.-|++..|..--+.+....|.. .++.+|
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLl 368 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLL 368 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHH
Confidence 45679999999999999999999999999999999999974 444444
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=98.74 E-value=1.4e-07 Score=87.56 Aligned_cols=110 Identities=11% Similarity=-0.002 Sum_probs=93.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 005133 526 LITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSW 605 (713)
Q Consensus 526 al~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~ 605 (713)
+..+.++.-+..+..|.-++..|++++|..+|+-....+|.+...|..||.++..+++|++|+..|-.+..++++++...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 33444555677888888899999999999999998888999999899999999999999999999999999989999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSS 636 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~ 636 (713)
+..|.||+..|+.+.|+.+|+.++. .|.+.
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999999998887 34443
No 165
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.4e-07 Score=96.88 Aligned_cols=148 Identities=14% Similarity=0.165 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 501 EGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA 580 (713)
Q Consensus 501 ~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~ 580 (713)
......|..+++.|++..|...|++++..-.... .-+.++.... .. .-..++.+++.++.+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~----~~---~k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKA----EA---LKLACHLNLAACYLK 269 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHH----HH---HHHHHhhHHHHHHHh
Confidence 3455678889999999999998888876432110 0011111111 00 113567889999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-HHHH
Q 005133 581 LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEA-IEMM 659 (713)
Q Consensus 581 ~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeA-l~~l 659 (713)
+++|.+|+..+.++|.++|++..+++..|.++...|+|+.|+..|++++++.|.+-.+...+..+..+..++.+. .++|
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998898888887766554 7888
Q ss_pred HHHHHhCC
Q 005133 660 EKAILADK 667 (713)
Q Consensus 660 ~kal~~~p 667 (713)
.+++..-+
T Consensus 350 ~~mF~k~~ 357 (397)
T KOG0543|consen 350 ANMFAKLA 357 (397)
T ss_pred HHHhhccc
Confidence 88876543
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.72 E-value=3.5e-08 Score=78.51 Aligned_cols=62 Identities=32% Similarity=0.420 Sum_probs=34.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 005133 642 LGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 642 la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
+|..++..|++++|+..|+++++..|+++.+++.+|.++..+|++++|+.+|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45555555555555555555555555555555555555555555555555555555555554
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.72 E-value=2.2e-07 Score=97.20 Aligned_cols=166 Identities=20% Similarity=0.216 Sum_probs=125.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C----CHHH
Q 005133 537 WCAMGNCYSLQKDHETALKNFQRAVQLNP--R----FAYGHTLCGHEYVALEDFENGIRSYQSALRVDA--R----HYNS 604 (713)
Q Consensus 537 ~~~la~~~~~~g~~~~Al~~~~kal~~~p--~----~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p--~----~~~~ 604 (713)
+...|.+|...+++++|.++|.++....- + -...+...+.+|... ++++|+.+|++++.+.- + -..+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44457788888999999999998876522 1 134456666666555 99999999999998632 2 2457
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-------
Q 005133 605 WYGLGMVYLRQ-EKFEFSEHHFRMAFQISPH--S----SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP------- 670 (713)
Q Consensus 605 ~~~lg~~y~~~-g~~~eA~~~l~kal~~~p~--~----~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~------- 670 (713)
+..+|.+|... |++++|+++|++|+++... . ...+..+|.++..+|+|++|++.|+++....-++.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 88999999999 9999999999999987322 2 24677899999999999999999999987643221
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 005133 671 LPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
..++..+.|++..|++..|...+++....+|..
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 345677889999999999999999999998854
No 168
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=1.4e-06 Score=83.31 Aligned_cols=195 Identities=14% Similarity=0.035 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 545 (713)
+..++..|..|-..|-+.-|.-.|.+++.+.|..++++..+|..+...|+++.|.+.++..++++|....+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 44556667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005133 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQ-SALRVDARHYNSWYGLGMVYLRQEKFEFSEHH 624 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~-~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~ 624 (713)
--|++.-|.+-+.+-.+.+|.++.--..+-.. ...-+..+|..-+. ++...+ +....|+..+. ..|+..+ ...
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d-~e~WG~~iV~~---yLgkiS~-e~l 218 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSD-KEQWGWNIVEF---YLGKISE-ETL 218 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhcc-HhhhhHHHHHH---HHhhccH-HHH
Confidence 77777777777777777777766432221111 12224444544433 333222 22222222221 1122111 122
Q ss_pred HHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005133 625 FRMAFQISPHS-------SVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (713)
Q Consensus 625 l~kal~~~p~~-------~~~~~~la~~~~~~g~~eeAl~~l~kal~~~ 666 (713)
++++..-..++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 219 MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 22222222222 3466777777777777777777777776643
No 169
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=5.6e-07 Score=85.92 Aligned_cols=195 Identities=12% Similarity=0.081 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 501 EGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA 580 (713)
Q Consensus 501 ~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~ 580 (713)
..++..|..|-.+|-+.-|...+.+++.+.|+-++++..+|..+...|+|+.|.+.|...++++|....++.+.|..++.
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 34555666777778888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005133 581 LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMME 660 (713)
Q Consensus 581 ~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~ 660 (713)
-|++.-|.+.+.+..+.+|.++---..+-.. ...-+..+|...+.+-.+...+....|...+ +.+|+..+ ...++
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgkiS~-e~l~~ 220 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGKISE-ETLME 220 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhhccH-HHHHH
Confidence 9999999999999999999987532222111 1223677777665443333222233332222 22333322 12333
Q ss_pred HHHHhCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 661 KAILADKKN-------PLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 661 kal~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
++.....++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 443333332 4678999999999999999999999888754
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.71 E-value=3.9e-07 Score=98.15 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=57.0
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005133 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMM 659 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l 659 (713)
..++++.|+.+|++..+.+|+ +...++.++...++..+|++.+.++++..|.+..++...+..+...++++.|+...
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344455555555554444433 33334555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 660 EKAILADKKNPLPMYQKANILLSLEKFDEALEVLE 694 (713)
Q Consensus 660 ~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 694 (713)
++++...|.+...|+.|+.+|..+|++++|+..+.
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 55555555555555555555555555555554443
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.70 E-value=4.8e-07 Score=92.80 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHcCCHHH
Q 005133 615 QEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQKANILLSLEKFDE 688 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~~~p~~---~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~---~~~~~~la~~~~~~g~~~e 688 (713)
.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|++++...|++ +.+++.+|.++..+|++++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 344455555555544444444 2344445555555555555555555544444432 3444444444444455555
Q ss_pred HHHHHHHHHHHCCCCh
Q 005133 689 ALEVLEELKEYAPRES 704 (713)
Q Consensus 689 A~~~~~kal~l~P~~~ 704 (713)
|+..|+++++..|+..
T Consensus 236 A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 236 AKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHCcCCH
Confidence 5555555544444443
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.70 E-value=6.1e-08 Score=77.08 Aligned_cols=60 Identities=20% Similarity=0.508 Sum_probs=24.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005133 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (713)
Q Consensus 575 g~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~ 634 (713)
|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 333444444444444444444444444444444444444444444444444444444443
No 173
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=2.6e-06 Score=84.15 Aligned_cols=227 Identities=15% Similarity=0.161 Sum_probs=168.6
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 005133 473 GKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHET 552 (713)
Q Consensus 473 g~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~ 552 (713)
.+-++..|.|..++..-++.-... ...+....+...|..+|++...+.-....- .....+...++.++..-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 455777899999998887775543 667777888888999888765443222211 1122455556666666666666
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 553 ALKNFQRAVQL--NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 553 Al~~~~kal~~--~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~ 630 (713)
-+.-+.+.+.. ...+......-|.+|...|++++|++..... ...++...-..++.+..+++-|.+.++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555544433 2223345556678899999999999988873 3456666677888999999999999999988
Q ss_pred hCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhH
Q 005133 631 ISPHSSVIMSYLGTAMHAL----KRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGV 706 (713)
Q Consensus 631 ~~p~~~~~~~~la~~~~~~----g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 706 (713)
++.+ ..+..||..+.+. +++.+|.-+|+..-+..+..+.....++.|+..+|+|++|...++.++..+++++++
T Consensus 166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 8654 4455565555543 368999999999998778789999999999999999999999999999999999998
Q ss_pred HHhc
Q 005133 707 YALM 710 (713)
Q Consensus 707 ~~~L 710 (713)
+.++
T Consensus 244 L~Nl 247 (299)
T KOG3081|consen 244 LANL 247 (299)
T ss_pred HHHH
Confidence 8765
No 174
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.69 E-value=1.3e-08 Score=102.63 Aligned_cols=228 Identities=11% Similarity=-0.003 Sum_probs=175.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK 548 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 548 (713)
+-..|.-|+.+|.|++|+.+|.+++..+|.++..+.+.+.+|..++.+..|...+..++.++.....+|...|..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---------HHHHHHHHHHcCCHH
Q 005133 549 DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNS---------WYGLGMVYLRQEKFE 619 (713)
Q Consensus 549 ~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~---------~~~lg~~y~~~g~~~ 619 (713)
...+|.+-++.++++.|...+....++.+-. ..++. -+.+-.|....+ .-.-|..+...|.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~----I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERK----IATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhh----HHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 9999999999999999997665554443322 11111 111222221111 123366677888899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005133 620 FSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 620 eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 699 (713)
.++.++...+.....+..+-.. +..|.+..+++.|+...-+++..+|.........+.+---.|...+|...++.++.+
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 9998888776665555444444 777888889999999999888887765555555555555667777888888888888
Q ss_pred CCCChh
Q 005133 700 APRESG 705 (713)
Q Consensus 700 ~P~~~~ 705 (713)
.|.+..
T Consensus 331 ~P~~~~ 336 (536)
T KOG4648|consen 331 APAVET 336 (536)
T ss_pred cccccc
Confidence 876543
No 175
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.66 E-value=1.2e-05 Score=90.97 Aligned_cols=235 Identities=14% Similarity=0.015 Sum_probs=180.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~ 513 (713)
+.+.-.+..+..+++.+|+..+.++++.+|+...+....|..++++|+.++|..+++..-...+++...+..+-.+|..+
T Consensus 11 rr~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 11 RRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH
Confidence 34445566678889999999999999999999999999999999999999999998888888888889999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHccCH--------
Q 005133 514 KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYG-HTLCGHEYVALEDF-------- 584 (713)
Q Consensus 514 g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a-~~~lg~~~~~~g~~-------- 584 (713)
++.+++..+|++++..+|. .+..+.+-.+|.+.+.|.+-.+.--+..+..|..+.. |..+..++......
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 9999999999999999999 8888888888998888877666666666677777654 44444444433332
Q ss_pred -HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHH--HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005133 585 -ENGIRSYQSALRVD-ARHYN-SWYGLGMVYLRQEKFEFSEHHFRM--AFQISPHSSVIMSYLGTAMHALKRSGEAIEMM 659 (713)
Q Consensus 585 -eeAl~~~~~al~~~-p~~~~-~~~~lg~~y~~~g~~~eA~~~l~k--al~~~p~~~~~~~~la~~~~~~g~~eeAl~~l 659 (713)
.-|...+++.++.. +-... =....-.++..+|++++|.+.+.. +-+..+.+..........+...+++.+-.+..
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 23555666666655 22111 122334566788999999999843 22334444445556677778889999999999
Q ss_pred HHHHHhCCCC
Q 005133 660 EKAILADKKN 669 (713)
Q Consensus 660 ~kal~~~p~~ 669 (713)
.+++...+++
T Consensus 250 ~~Ll~k~~Dd 259 (932)
T KOG2053|consen 250 SRLLEKGNDD 259 (932)
T ss_pred HHHHHhCCcc
Confidence 9999888887
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.63 E-value=7.6e-07 Score=79.63 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 005133 570 GHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH---SSVIMSYLG 643 (713)
Q Consensus 570 a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~---~~~~~~~la 643 (713)
+++.+|.++...|+.++|+.+|++++...... ..++..+|..|...|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 44555555555555555555555555543222 345555555555555555555555555555554 444445555
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 005133 644 TAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 644 ~~~~~~g~~eeAl~~l~kal 663 (713)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555554444
No 177
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.62 E-value=9e-07 Score=95.35 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=99.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 005133 504 DIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALED 583 (713)
Q Consensus 504 ~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~ 583 (713)
..+..++...++++.|+.+++++.+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34455566667888888888888887754 566788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 584 FENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMA 628 (713)
Q Consensus 584 ~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~ka 628 (713)
++.|+.+.++++...|.+...|+.|+.+|...|++++|+..+..+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 888888888888888888888888888888888888888777654
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.60 E-value=9.5e-07 Score=79.02 Aligned_cols=96 Identities=9% Similarity=0.010 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDAR---HYNSWYGL 608 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~---~~~~~~~l 608 (713)
.+++.+|.++-..|+.++|+.+|++++...... ..+++.+|..+..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 567889999999999999999999999875443 567889999999999999999999999998888 77788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 005133 609 GMVYLRQEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 609 g~~y~~~g~~~eA~~~l~kal~ 630 (713)
+.++...|++++|+..+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 179
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.56 E-value=4.3e-05 Score=86.77 Aligned_cols=226 Identities=13% Similarity=0.108 Sum_probs=176.4
Q ss_pred HHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005133 477 FEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKN 556 (713)
Q Consensus 477 ~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~ 556 (713)
...+++.+|+....+.++..|+..-+...-|..+.++|+.++|..+++..-...+++...+-.+-.+|..++++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 45689999999999999999999999999999999999999999998888888888999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CC---------HHHHHHHHH
Q 005133 557 FQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ-EK---------FEFSEHHFR 626 (713)
Q Consensus 557 ~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~-g~---------~~eA~~~l~ 626 (713)
|++++..+|. ....+.+-.+|.+.+.|.+-.+.--+..+..|..+..+.....+++.. .. ..-|.+.++
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9999999999 788888888899998888766666666667888766555544444332 22 234666777
Q ss_pred HHHHhC-CCCHHH-HHHHHHHHHHcCChHHHHHHHHHH-HH-hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 627 MAFQIS-PHSSVI-MSYLGTAMHALKRSGEAIEMMEKA-IL-ADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 627 kal~~~-p~~~~~-~~~la~~~~~~g~~eeAl~~l~ka-l~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
+.++.. +-...+ ....-.++..+|++++|.+.+..- .+ ..+.+...-......+...+++.+-.+...+++...++
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 777665 222111 122345667789999999999432 23 33444444456677888899999999999999999888
Q ss_pred C
Q 005133 703 E 703 (713)
Q Consensus 703 ~ 703 (713)
+
T Consensus 259 d 259 (932)
T KOG2053|consen 259 D 259 (932)
T ss_pred c
Confidence 7
No 180
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.53 E-value=8.4e-05 Score=81.49 Aligned_cols=261 Identities=13% Similarity=0.027 Sum_probs=183.8
Q ss_pred HHHHHccCCHHHHHHHHHcCcccCCC----CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC----------------
Q 005133 439 GYRMSCMYRCKDALDVYLKLPHKHYN----TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY---------------- 498 (713)
Q Consensus 439 a~~l~~~g~~~eAi~~l~~~~~~~~~----~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~---------------- 498 (713)
|..+...|+.+.|..+|+++.+.... -+.+|...|..-....+++.|+++.+++...-..
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 44457788999999999988765433 3567888888888888999999998888754211
Q ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 005133 499 --SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN--PRFAYGHTLC 574 (713)
Q Consensus 499 --~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~--p~~~~a~~~l 574 (713)
....|..++......|-++.-...|++.+++---.|..-.+.|..+....-+++|.+.|++.+.+. |.-.+.|...
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 245677778888888888888888999998888888888888988888888999999999988874 3444555443
Q ss_pred HHH---HHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 575 GHE---YVALEDFENGIRSYQSALRVDARHY--NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL 649 (713)
Q Consensus 575 g~~---~~~~g~~eeAl~~~~~al~~~p~~~--~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 649 (713)
-.. -+.-...+.|..+|++|++..|... ..+...+..-.+-|--..|+..|++|-..-+... .+.+-.+|.+.
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~--~l~myni~I~k 631 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQ--RLDMYNIYIKK 631 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHH
Confidence 222 2333468889999999998877422 2344455556666788888888888765433221 12222222221
Q ss_pred C----ChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 005133 650 K----RSGEAIEMMEKAILADKKNP--LPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 650 g----~~eeAl~~l~kal~~~p~~~--~~~~~la~~~~~~g~~~eA~~~~~kal~l~P 701 (713)
- -...-..+|++|++.-|+.. ......|..-..+|..+.|...|.-+-++.+
T Consensus 632 aae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 632 AAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred HHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 1 12344678888888877543 3346678888899999999999988887654
No 181
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1.4e-05 Score=84.60 Aligned_cols=262 Identities=17% Similarity=0.138 Sum_probs=179.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcC-cccCCC--------CHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-h--------
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKL-PHKHYN--------TGWVLSQVGKAYFEVVDYLEAERAFTLARR-A-------- 495 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~-~~~~~~--------~~~~~~~lg~~~~~~g~~~eA~~~~~kal~-~-------- 495 (713)
..+-++...+..|+|.+|.+.+... +...+. ....|.++|.+++..|.|.-+..+|.++++ .
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 4556777778899999999999865 233332 334567999999999999999999999996 1
Q ss_pred CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-----------------
Q 005133 496 SP---------YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKD----------------- 549 (713)
Q Consensus 496 ~p---------~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~----------------- 549 (713)
.| ...+.+++.|..+.+.|+...|.+++.++...+..+|..|..+|.+.+...+
T Consensus 322 ~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~ 401 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIR 401 (696)
T ss_pred CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccce
Confidence 11 3467889999999999999999999999999999999999999988763110
Q ss_pred --------------------------------HHHHHHHHHHHHHhCCC-------------------------------
Q 005133 550 --------------------------------HETALKNFQRAVQLNPR------------------------------- 566 (713)
Q Consensus 550 --------------------------------~~~Al~~~~kal~~~p~------------------------------- 566 (713)
.+-|.-+++.++-+-|+
T Consensus 402 ~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~ 481 (696)
T KOG2471|consen 402 VHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTD 481 (696)
T ss_pred eeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcc
Confidence 12244555555432110
Q ss_pred ---------------CH-----------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----Hc
Q 005133 567 ---------------FA-----------YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL-----RQ 615 (713)
Q Consensus 567 ---------------~~-----------~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~-----~~ 615 (713)
.+ .++...+.+-..+|+.-.|+..-.+.++. |+...++..||.+|. .+
T Consensus 482 Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~ll 560 (696)
T KOG2471|consen 482 SKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLL 560 (696)
T ss_pred hhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHc
Confidence 00 12344556666778888888888777765 455666666666654 34
Q ss_pred CCHHHHHHHHHHHH------Hh-----------------CC------C----C-----HHHHHHHHHHHHHcCChHHHHH
Q 005133 616 EKFEFSEHHFRMAF------QI-----------------SP------H----S-----SVIMSYLGTAMHALKRSGEAIE 657 (713)
Q Consensus 616 g~~~eA~~~l~kal------~~-----------------~p------~----~-----~~~~~~la~~~~~~g~~eeAl~ 657 (713)
.+..+|..++.--+ .+ +| + . ...++++|.++.-+|++++|..
T Consensus 561 dr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ 640 (696)
T KOG2471|consen 561 DRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKS 640 (696)
T ss_pred CChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHH
Confidence 66666665554311 00 00 0 0 1255678888888888888888
Q ss_pred HHHHHHHhCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 658 MMEKAILADK--KNPLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 658 ~l~kal~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
++..+..+-+ ..+.+......+-.++|+...|+..+++.
T Consensus 641 ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 641 LLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 8877777665 44556555666667778888887777664
No 182
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=2.5e-05 Score=87.25 Aligned_cols=238 Identities=10% Similarity=0.010 Sum_probs=127.6
Q ss_pred ccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHH----------HHhCC----------CCHHHH
Q 005133 444 CMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLA----------RRASP----------YSLEGM 503 (713)
Q Consensus 444 ~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ka----------l~~~p----------~~~~a~ 503 (713)
..|.|++|.++.+.--..+ --..|+..|..+...+|.+.|+++|+++ +..+| .+...|
T Consensus 838 s~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~ 915 (1416)
T KOG3617|consen 838 SQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLY 915 (1416)
T ss_pred hcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHH
Confidence 3466666666555332222 2235666666666677777777777664 22222 223344
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 005133 504 DIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALED 583 (713)
Q Consensus 504 ~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~ 583 (713)
...|..+...|+.+.|+.+|..+-+ |+.+..+..-+|+.++|.+..++ ..+..+-+.+|..|...|+
T Consensus 916 ~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 916 SWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHH
Confidence 5555556666666666666555432 23333333333333333332222 2344556666666777777
Q ss_pred HHHHHHHHHHHHHh------CCCC---H-----------HHHHHHHHHHHHcC-CHHHHHHHHHHH------H-------
Q 005133 584 FENGIRSYQSALRV------DARH---Y-----------NSWYGLGMVYLRQE-KFEFSEHHFRMA------F------- 629 (713)
Q Consensus 584 ~eeAl~~~~~al~~------~p~~---~-----------~~~~~lg~~y~~~g-~~~eA~~~l~ka------l------- 629 (713)
+.+|+..|.+|-.. ..++ . .-....+..|...| ..+.|..+|.+| +
T Consensus 983 v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhc
Confidence 77766666554322 1110 0 00111223333333 344444333221 1
Q ss_pred ----------HhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHH------HHHhC----------------CC--------
Q 005133 630 ----------QISP-HSSVIMSYLGTAMHALKRSGEAIEMMEK------AILAD----------------KK-------- 668 (713)
Q Consensus 630 ----------~~~p-~~~~~~~~la~~~~~~g~~eeAl~~l~k------al~~~----------------p~-------- 668 (713)
.+++ .++.++...+..+....+|++|...+-. |+++. |.
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~ 1142 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQ 1142 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHH
Confidence 1223 3577788888888888899998876544 33321 11
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 669 -NPLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 669 -~~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
...++..+|.++.++|.|..|-+-|.++
T Consensus 1143 ~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1143 ERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1346788999999999999998887765
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.50 E-value=2.6e-05 Score=77.60 Aligned_cols=171 Identities=15% Similarity=0.100 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHH
Q 005133 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY---NSWY 606 (713)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~---~~~~ 606 (713)
.+..|+.-|....+.|++++|++.|+.+....|.. ..+...++..+++.+++++|+...++.+++.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 35667777788888888888888888887776654 45677778888888888888888888888877654 3455
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCChHHHHHHHHH
Q 005133 607 GLGMVYLRQ--------EKFEFSEHHFRMAFQISPHSSV-----------------IMSYLGTAMHALKRSGEAIEMMEK 661 (713)
Q Consensus 607 ~lg~~y~~~--------g~~~eA~~~l~kal~~~p~~~~-----------------~~~~la~~~~~~g~~eeAl~~l~k 661 (713)
..|.+++.. .-..+|+..|+..+...|++.. .-..+|..|.+.|.+..|+..++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 666665543 2235677777777887777632 123578889999999999999999
Q ss_pred HHHhCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 005133 662 AILADKKN---PLPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 662 al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
+++..|+. .+++..+..+|..+|-.++|...-.-.-...|+.
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 99887764 4567788888999999999877654444444554
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.47 E-value=2.1e-05 Score=73.66 Aligned_cols=122 Identities=14% Similarity=0.130 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 005133 537 WCAMGNCYSLQKDHETALKNFQRAVQ-LNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR--HYNSWYGLGMVYL 613 (713)
Q Consensus 537 ~~~la~~~~~~g~~~~Al~~~~kal~-~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~--~~~~~~~lg~~y~ 613 (713)
.+.+|..+...|++.+|...|++++. +.-+++..+..++...+..+++..|...+++..+.+|. .++....+|.+|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 34445555555555555555555443 23334444444555555555555555555555554443 2344444455555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005133 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMM 659 (713)
Q Consensus 614 ~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l 659 (713)
.+|++.+|...|+.++...|. +.+....+..+.++|+.++|...+
T Consensus 172 a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHH
Confidence 555555555555555544443 333344444445555444444433
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.44 E-value=7.9e-07 Score=72.35 Aligned_cols=65 Identities=31% Similarity=0.433 Sum_probs=34.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHH
Q 005133 644 TAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 644 ~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 708 (713)
.+|...+++++|++++++++.++|+++..+..+|.++..+|++++|+..|+++++..|+++.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555544443
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.44 E-value=3.4e-06 Score=84.58 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=77.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 005133 571 HTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGT 644 (713)
Q Consensus 571 ~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~ 644 (713)
.+..|.-++..|+|..|...|...++..|+. +.+++.||.+++.+|+|++|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6667777777777888888888887777764 5677777888888888888887777777766554 567777777
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005133 645 AMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (713)
Q Consensus 645 ~~~~~g~~eeAl~~l~kal~~~p~~~~~~~ 674 (713)
+...+|+.++|...|+++++..|+...+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 777777777777777777777777665543
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.44 E-value=4.8e-07 Score=72.50 Aligned_cols=52 Identities=19% Similarity=0.375 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005133 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (713)
Q Consensus 583 ~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~ 634 (713)
++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++...|+
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3333333333333333333333333333333333333333333333333333
No 188
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.44 E-value=8.3e-05 Score=74.05 Aligned_cols=190 Identities=18% Similarity=0.149 Sum_probs=112.1
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHH
Q 005133 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS---LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP---QSW 537 (713)
Q Consensus 464 ~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~---~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~---~~~ 537 (713)
..+..|+..|...+..|+|++|++.|+.+....|.. ..+...++.+++..+++++|+..+++-+.+.|.++ .++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 356778889999999999999999999999888764 34455555555555555555555555555555443 234
Q ss_pred HHHHHHHHhcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 538 CAMGNCYSLQK--------DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (713)
Q Consensus 538 ~~la~~~~~~g--------~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg 609 (713)
+..|.++...= -..+|+..|+..+...|+...+-..... +..++..+ ...-..+|
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~L------A~~Em~Ia 174 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDAL------AGHEMAIA 174 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHHH------HHHHHHHH
Confidence 44444433211 1123444444444444443322111000 00000000 12234568
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005133 610 MVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (713)
Q Consensus 610 ~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~ 670 (713)
..|.+.|.|..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|+++
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 88888899999999998888876654 34777788888888888888765443333344443
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.43 E-value=6.6e-07 Score=71.71 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=42.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005133 613 LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (713)
Q Consensus 613 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~ 678 (713)
+..|++++|+..|++++..+|++..++..+|.+|.+.|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 455666666666666666666666666666666666666666666666666666666655555544
No 190
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=1.9e-06 Score=81.40 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=103.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 571 HTLCGHEYVALEDFENGIRSYQSALRVDARH-----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA 645 (713)
Q Consensus 571 ~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~-----~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~ 645 (713)
+..-|.-++..|+|++|..-|..|+.+.|.. ...|.+.|.++++++.++.|+..+.++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 4456899999999999999999999999874 34678899999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Q 005133 646 MHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEA 689 (713)
Q Consensus 646 ~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA 689 (713)
|.++..|++|+..|++.++.+|....+....+++--......++
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999998888777777665544444443
No 191
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.42 E-value=3.4e-06 Score=84.57 Aligned_cols=103 Identities=15% Similarity=0.079 Sum_probs=84.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCC---CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYN---TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS---LEGMDIYST 508 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~---~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~---~~a~~~la~ 508 (713)
.+..|+.++..|+|.+|...|...++..|+ .+.++|.||.+++.+|+|++|...|..+++..|.. +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 778889999999999999999999998886 56789999999999999999999999999988865 566667777
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 005133 509 VLYHLKEDMKLSYLAQELITTDRLAPQSW 537 (713)
Q Consensus 509 ~l~~~g~~~~A~~~~~kal~~~p~~~~~~ 537 (713)
++..+|+.++|...++++++..|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 77777777777777777777666655443
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.42 E-value=1.2e-06 Score=71.19 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=32.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005133 610 MVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (713)
Q Consensus 610 ~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~ 673 (713)
.+|...++|++|++++++++..+|+++..+..+|.++..+|++++|+..|+++++..|+++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555444443
No 193
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=3.1e-06 Score=79.93 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 536 SWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA-----YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (713)
Q Consensus 536 ~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~-----~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~ 610 (713)
-+-.-|+-++..|+|++|..-|..|+.+.|... ..|.+.|.+++.++.++.|+..+.++++++|....++...|.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 345569999999999999999999999988753 457788999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAM 646 (713)
Q Consensus 611 ~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 646 (713)
+|.+..+|++|++-|.+.++.+|....+...++.+-
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 999999999999999999999998776665555443
No 194
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=4.4e-05 Score=85.29 Aligned_cols=171 Identities=13% Similarity=0.106 Sum_probs=116.2
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 005133 470 SQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKD 549 (713)
Q Consensus 470 ~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 549 (713)
...|.+..++|..++|+.+|++.-+ +..+-..|...|.+.+|.++.+.--++. -...|+..|..+...++
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhcc
Confidence 3456667777888888888877654 3455667777788888877655432222 13568888888888889
Q ss_pred HHHHHHHHHHHH----------HhCC----------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 550 HETALKNFQRAV----------QLNP----------RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (713)
Q Consensus 550 ~~~Al~~~~kal----------~~~p----------~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg 609 (713)
.+.|+++|+++- ..+| .+...|...|..+...|+.+.|+.+|..|-. |+.+.
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~V 945 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMV 945 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhhe
Confidence 999999888752 2233 2345667778888888888888888887633 45555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005133 610 MVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 610 ~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal 663 (713)
.+..-+|+.++|..+.++ ..+..+.+.+|..|...|+..+|+.+|.+|-
T Consensus 946 rI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 666666666666555443 3455566777777777777777777776653
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00042 Score=68.50 Aligned_cols=205 Identities=11% Similarity=0.097 Sum_probs=136.2
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 005133 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS-------------------LEGMDIYSTVLYHLKEDMKLSYLAQ 524 (713)
Q Consensus 464 ~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~-------------------~~a~~~la~~l~~~g~~~~A~~~~~ 524 (713)
+....|...-.++..+..+++|...+...-+.|..+ .......+.+...+|...+...-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 345567777778888888999888877766654321 1223445666667776555444333
Q ss_pred HHHH-------h-----CCCC-H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Q 005133 525 ELIT-------T-----DRLA-P--------QSWCAMGNCYSLQKDHETALKNFQRAVQLN-PRFAYGHTLCGHEYVALE 582 (713)
Q Consensus 525 kal~-------~-----~p~~-~--------~~~~~la~~~~~~g~~~~Al~~~~kal~~~-p~~~~a~~~lg~~~~~~g 582 (713)
.+.. . .|+. . .+.+.+..++...|+|.-.+..+.+.++.+ |.++.....+|.+.++.|
T Consensus 147 ~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 147 KLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc
Confidence 2221 1 1111 1 234456667777777887888888877776 556667777788888888
Q ss_pred CHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005133 583 DFENGIRSYQSALRVD------ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAI 656 (713)
Q Consensus 583 ~~eeAl~~~~~al~~~------p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl 656 (713)
+.+.|..+|+++-+.. .....+..+.+.+|.-.+++.+|...|.+++..+|.++.+..+.|.|+...|+..+|+
T Consensus 227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 8888877777554322 1233455666777777778888888888888888888777778888888888888888
Q ss_pred HHHHHHHHhCCC
Q 005133 657 EMMEKAILADKK 668 (713)
Q Consensus 657 ~~l~kal~~~p~ 668 (713)
+.++.+++..|.
T Consensus 307 K~~e~~~~~~P~ 318 (366)
T KOG2796|consen 307 KQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHhccCCc
Confidence 888887777775
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.36 E-value=5.1e-05 Score=71.11 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=131.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCCH
Q 005133 472 VGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELIT-TDRLAPQSWCAMGNCYSLQKDH 550 (713)
Q Consensus 472 lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~-~~p~~~~~~~~la~~~~~~g~~ 550 (713)
++....+.=|.+.++.-..+.+...|.. .-...++..+..+|++.+|...|++++. +.-+++..+..+++..+..+++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 4444555556666666667777777764 3467889999999999999999999886 6778899999999999999999
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 551 ETALKNFQRAVQLNPR--FAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMA 628 (713)
Q Consensus 551 ~~Al~~~~kal~~~p~--~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~ka 628 (713)
..|...+++..+.+|. .+.....+|..|...|++.+|...|+.++...|+ +.+....+..+..+|+.++|..-+...
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 9999999999998875 4678889999999999999999999999999987 778888899999999988887766555
Q ss_pred HH
Q 005133 629 FQ 630 (713)
Q Consensus 629 l~ 630 (713)
.+
T Consensus 220 ~d 221 (251)
T COG4700 220 VD 221 (251)
T ss_pred HH
Confidence 43
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.32 E-value=1.4e-05 Score=72.73 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---hHHHHH
Q 005133 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP---LPMYQK 676 (713)
Q Consensus 603 ~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~---~~~~~l 676 (713)
..++.-|...++.|+|++|++.|+......|.. ..+...+|.+|++.+++++|+..+++.++++|.++ .+++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 344455555555555555555555555544433 23445555555555555555555555555555443 234555
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHHHCCCChhH
Q 005133 677 ANILLSLEK---------------FDEALEVLEELKEYAPRESGV 706 (713)
Q Consensus 677 a~~~~~~g~---------------~~eA~~~~~kal~l~P~~~~~ 706 (713)
|.+++.+.. ..+|...|+++++..|+...+
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 555555444 678889999999999887543
No 198
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0001 Score=71.66 Aligned_cols=180 Identities=15% Similarity=0.136 Sum_probs=121.2
Q ss_pred hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHhcCCHHH
Q 005133 479 VVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTD-----RLA-PQSWCAMGNCYSLQKDHET 552 (713)
Q Consensus 479 ~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~-----p~~-~~~~~~la~~~~~~g~~~~ 552 (713)
.+++++|.++|.++ +..+...+++..|-..|.++.+.. ..+ ...|...+.+|.+ .+..+
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEE 91 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHH
Confidence 35788888877765 677777777887777777766542 122 2345555555554 48888
Q ss_pred HHHHHHHHHHhCCCCHH------HHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHH
Q 005133 553 ALKNFQRAVQLNPRFAY------GHTLCGHEYVAL-EDFENGIRSYQSALRVDARH------YNSWYGLGMVYLRQEKFE 619 (713)
Q Consensus 553 Al~~~~kal~~~p~~~~------a~~~lg~~~~~~-g~~eeAl~~~~~al~~~p~~------~~~~~~lg~~y~~~g~~~ 619 (713)
|+.++++++++..+... -+..+|.+|... .++++|+.+|+++-+..... -.++...+..-...++|.
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888887554332 244677777655 78888888888887764432 234556666667778888
Q ss_pred HHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005133 620 FSEHHFRMAFQISPHSSV-------IMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (713)
Q Consensus 620 eA~~~l~kal~~~p~~~~-------~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~ 673 (713)
+|+..|+++....-++.. .++.-|.|++-..+.-.+...+++..+++|......
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 888888887766555432 344566677766777777777888888888765554
No 199
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.22 E-value=2.8e-05 Score=70.84 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY---NSWYG 607 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~---~~~~~ 607 (713)
+..++..|...+..|+|++|++.|+.+....|.. ..+.+.+|.+|+..+++++|+..+++.++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3445555555555555555555555555554432 23445555555555555555555555555555442 23444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005133 608 LGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLP 672 (713)
Q Consensus 608 lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~ 672 (713)
.|.+++.+.. ..+...+..+. ..+...+|...|++.+...|++..+
T Consensus 90 ~gL~~~~~~~-----~~~~~~~~~dr--------------D~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDE-----GSLQSFFRSDR--------------DPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhh-----hHHhhhccccc--------------CcHHHHHHHHHHHHHHHHCcCChhH
Confidence 4544444432 00000000000 0011557778888888887776544
No 200
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=8e-05 Score=75.75 Aligned_cols=172 Identities=9% Similarity=0.020 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHH
Q 005133 501 EGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL-NPRF---AYGHTLCGH 576 (713)
Q Consensus 501 ~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~-~p~~---~~a~~~lg~ 576 (713)
+-...-+.+++..|+..+|....+++++..|.+..++...-..++..|+.+.-...+++++.. +++. .++.-.++.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 344555667777888888888888888888888888877778888888888888888887766 4444 455566777
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCh
Q 005133 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS----SVIMSYLGTAMHALKRS 652 (713)
Q Consensus 577 ~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~----~~~~~~la~~~~~~g~~ 652 (713)
.+...|-|++|.+..++++++++.+..+...++.++...|++.++.++..+--..-... ..-|...|.++..-+.|
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch
Confidence 78888888888888888888888888888888888888888888888776643221111 11234567777777888
Q ss_pred HHHHHHHHHHHH--hCCCChhH
Q 005133 653 GEAIEMMEKAIL--ADKKNPLP 672 (713)
Q Consensus 653 eeAl~~l~kal~--~~p~~~~~ 672 (713)
+.|+++|++-+- +..++..+
T Consensus 264 e~aleIyD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 264 EKALEIYDREIWKRLEKDDAVA 285 (491)
T ss_pred hHHHHHHHHHHHHHhhccchhh
Confidence 888888876542 33444444
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.21 E-value=2.3e-05 Score=84.14 Aligned_cols=69 Identities=19% Similarity=0.125 Sum_probs=57.0
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 005133 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYG---HTLCGHEYVALEDFENGIRSYQSALRV 597 (713)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a---~~~lg~~~~~~g~~eeAl~~~~~al~~ 597 (713)
.+|+++..|+.+|..|...|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478888888888888888888888888888888888887744 888888888888888888888888876
No 202
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=4.7e-05 Score=80.87 Aligned_cols=276 Identities=10% Similarity=0.027 Sum_probs=154.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHh--C---C----------C
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEV-VDYLEAERAFTLARRA--S---P----------Y 498 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~-g~~~eA~~~~~kal~~--~---p----------~ 498 (713)
....+...+..+.|+..++++..+......+.++++..+.+.+.. |... -...++....+ + | .
T Consensus 20 l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq-~~~ll~el~aL~~~~~~~~~~~~gld~~~ 98 (696)
T KOG2471|consen 20 LLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ-HSVLLKELEALTADADAPGDVSSGLSLKQ 98 (696)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch-hHHHHHHHHHHHHhhccccchhcchhhhc
Confidence 445555666777888888877777666555555555555544333 3221 11122211111 0 1 1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CC--
Q 005133 499 SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRL----AP-QSWCAMGNCYSLQKDHETALKNFQRAVQL------NP-- 565 (713)
Q Consensus 499 ~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~----~~-~~~~~la~~~~~~g~~~~Al~~~~kal~~------~p-- 565 (713)
....++..+.++++...+..|+.........-.. .. ...+..-..+....+-++|+.++.-.-++ .+
T Consensus 99 ~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~g 178 (696)
T KOG2471|consen 99 GTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVG 178 (696)
T ss_pred chHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 2334556666777777777776655544432111 11 11222233344444555555443322111 00
Q ss_pred --------------CC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005133 566 --------------RF-----------AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEF 620 (713)
Q Consensus 566 --------------~~-----------~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~e 620 (713)
.. ..+.......|........+..-.+-+..+..+.+.+....+..++..|++.+
T Consensus 179 n~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~k 258 (696)
T KOG2471|consen 179 NHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPK 258 (696)
T ss_pred cccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHH
Confidence 00 01222333445555566666666666666666677777777777888888888
Q ss_pred HHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---------CC---------CChhHH
Q 005133 621 SEHHFRMA-FQISPH--------SSVIMSYLGTAMHALKRSGEAIEMMEKAILA---------DK---------KNPLPM 673 (713)
Q Consensus 621 A~~~l~ka-l~~~p~--------~~~~~~~la~~~~~~g~~eeAl~~l~kal~~---------~p---------~~~~~~ 673 (713)
|.+.+... +...+. ...+|.++|.+++.+|.|..+..+|.+|++. .| ...++.
T Consensus 259 A~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eil 338 (696)
T KOG2471|consen 259 AMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEIL 338 (696)
T ss_pred HHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhH
Confidence 87776543 222222 1224567788888888888888888887741 11 234567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 674 YQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
|+.|..|...|+.-.|.++|.++......+|..|..|+
T Consensus 339 YNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 339 YNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred HhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 77888888888888888888888887777788887765
No 203
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00025 Score=69.00 Aligned_cols=179 Identities=12% Similarity=0.094 Sum_probs=132.6
Q ss_pred cCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHccCHHH
Q 005133 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP-----Y-SLEGMDIYSTVLYHLKEDMK 518 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p-----~-~~~a~~~la~~l~~~g~~~~ 518 (713)
.++|++|.++|. .-|..|...++|..|-..|.++-+..- + ....+...+.++. ..+..+
T Consensus 27 ~~k~eeAadl~~--------------~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYE--------------RAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEE 91 (288)
T ss_pred CcchHHHHHHHH--------------HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHH
Confidence 457777777665 457888888999999999999876532 1 1333444444444 459999
Q ss_pred HHHHHHHHHHhCCCCHH------HHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHH
Q 005133 519 LSYLAQELITTDRLAPQ------SWCAMGNCYSLQ-KDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALEDFE 585 (713)
Q Consensus 519 A~~~~~kal~~~p~~~~------~~~~la~~~~~~-g~~~~Al~~~~kal~~~p~~------~~a~~~lg~~~~~~g~~e 585 (713)
|..++++++++.-+... .+..+|.+|... .++++|+.+|+++-+..... -..+...+..-..+++|.
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999998765443 345788888876 89999999999998764332 134555677777889999
Q ss_pred HHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005133 586 NGIRSYQSALRVDARHYN-------SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVI 638 (713)
Q Consensus 586 eAl~~~~~al~~~p~~~~-------~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~ 638 (713)
+|+..|+++....-++.. .++.-|.|++-..+.-.+...+++..+++|.....
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 999999999886555432 35566788888788888888899989999987654
No 204
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.17 E-value=0.00012 Score=78.63 Aligned_cols=215 Identities=11% Similarity=0.038 Sum_probs=128.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 005133 471 QVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDH 550 (713)
Q Consensus 471 ~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~ 550 (713)
.+..-..+..+.+.-++.-++|++++|+...++..++.- ......++..+++++++..... +.........|..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccch
Confidence 344445566777777788888888877777776665531 1122455666666665533211 0000011111111
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 551 ETALKNFQRAVQLNP--RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR--HYNSWYGLGMVYLRQEKFEFSEHHFR 626 (713)
Q Consensus 551 ~~Al~~~~kal~~~p--~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~--~~~~~~~lg~~y~~~g~~~eA~~~l~ 626 (713)
- ..+.... -...+...+|.+..+.|+.++|++.|+..++..|. +..++.+|..++...+.|.++...+.
T Consensus 247 ~-------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 247 W-------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred h-------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0 0111111 12455677899999999999999999999988775 46688899999999999999999988
Q ss_pred HHHHh-CCCCHHHHHHHHHHHHHc-CC---------------hHHHHHHHHHHHHhCCCChhHHHHHHH------HHHHc
Q 005133 627 MAFQI-SPHSSVIMSYLGTAMHAL-KR---------------SGEAIEMMEKAILADKKNPLPMYQKAN------ILLSL 683 (713)
Q Consensus 627 kal~~-~p~~~~~~~~la~~~~~~-g~---------------~eeAl~~l~kal~~~p~~~~~~~~la~------~~~~~ 683 (713)
+--++ -|+.+.+.+..|.+..+. ++ -..|++.+.+|++.+|.-+..+..+-. -+.+.
T Consensus 320 kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkr 399 (539)
T PF04184_consen 320 KYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKR 399 (539)
T ss_pred HhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCC
Confidence 85433 355666666555544331 11 234678899999999876654433211 13344
Q ss_pred CCHHHHHHHHHHHHHH
Q 005133 684 EKFDEALEVLEELKEY 699 (713)
Q Consensus 684 g~~~eA~~~~~kal~l 699 (713)
|+ .||+.|---.+..
T Consensus 400 GD-SEAiaYAf~hL~h 414 (539)
T PF04184_consen 400 GD-SEAIAYAFFHLQH 414 (539)
T ss_pred Cc-HHHHHHHHHHHHH
Confidence 54 5666555444443
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00047 Score=68.13 Aligned_cols=135 Identities=18% Similarity=0.124 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CC--CCHHHHHHH
Q 005133 502 GMDIYSTVLYHLKEDMKLSYLAQELITTD-RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL----NP--RFAYGHTLC 574 (713)
Q Consensus 502 a~~~la~~l~~~g~~~~A~~~~~kal~~~-p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~----~p--~~~~a~~~l 574 (713)
..+.++.++..+|++.-....++++++.+ |..+.....+|.+-++.||.+.|..+|++.-+. +. ....+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45677888888999999999999999988 678888999999999999999999999966543 22 223456677
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005133 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS 636 (713)
Q Consensus 575 g~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~ 636 (713)
+.+|.-.+++..|...|.+++..+|.++.+.++.|.|+...|+..+|++.++.++...|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 88899999999999999999999999999999999999999999999999999999998754
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.16 E-value=1.4e-05 Score=85.75 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=60.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005133 563 LNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNS---WYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 563 ~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~---~~~lg~~y~~~g~~~eA~~~l~kal~~ 631 (713)
.+|+++.+|+++|.+|...|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478888889999999999999999999999999999988754 889999999999999999999999886
No 207
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00012 Score=74.43 Aligned_cols=204 Identities=9% Similarity=-0.007 Sum_probs=150.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCccc---CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHK---HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVL 510 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l 510 (713)
+.+..|......+.--+=.+.++++... ..+..+-....+.+.+..|++.+|....+++++..|.+.-++..--.++
T Consensus 68 rt~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~ 147 (491)
T KOG2610|consen 68 RTFALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAH 147 (491)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHH
Confidence 3444555555554444444455554321 1122233445566777889999999999999999999999998888899
Q ss_pred HHccCHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 005133 511 YHLKEDMKLSYLAQELITT-DRLAP---QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFEN 586 (713)
Q Consensus 511 ~~~g~~~~A~~~~~kal~~-~p~~~---~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~ee 586 (713)
...|+...-...+++.+.. +++.| .+.-.++..+...|-|++|.+..++++++++.+..+...+++++...|++.+
T Consensus 148 fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Ke 227 (491)
T KOG2610|consen 148 FYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKE 227 (491)
T ss_pred HhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhh
Confidence 9999999999999998877 66654 4444567788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH
Q 005133 587 GIRSYQSALRVDARH----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQ--ISPHSSV 637 (713)
Q Consensus 587 Al~~~~~al~~~p~~----~~~~~~lg~~y~~~g~~~eA~~~l~kal~--~~p~~~~ 637 (713)
+.+.+.+--..=... ..-|...+.+++..+.|+.|++.|.+-+- ...++..
T Consensus 228 g~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 228 GKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccchh
Confidence 999988753321110 12255678888888999999999987553 3344444
No 208
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.12 E-value=6.8e-05 Score=78.20 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 536 SWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA-LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (713)
Q Consensus 536 ~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~-~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~ 614 (713)
+|..+.....+.+..+.|..+|.+|.+..+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455555555555555566666666554444445555555555444 3344446666666666555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005133 615 QEKFEFSEHHFRMAFQISPHSS---VIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~~~p~~~---~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~ 668 (713)
.++.+.|..+|++++..-+... .+|......-.+.|+.+...++.+++.+..|+
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5566666666666555544333 34444444555555555555555555555444
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.10 E-value=9.5e-05 Score=65.29 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=72.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Q 005133 572 TLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS----VIMSYLGTAMH 647 (713)
Q Consensus 572 ~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~----~~~~~la~~~~ 647 (713)
-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|++-+++++++..... .++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 34566677778888888888888888888888888888888888888888888888887754433 35667788888
Q ss_pred HcCChHHHHHHHHHHHHhCC
Q 005133 648 ALKRSGEAIEMMEKAILADK 667 (713)
Q Consensus 648 ~~g~~eeAl~~l~kal~~~p 667 (713)
.+|+.+.|...|+.+.++..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 88888888888887776654
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.08 E-value=4.1e-06 Score=69.15 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 604 ~~~~lg~~y~~~g~~~eA~~~l~kal~ 630 (713)
++..+|.+|..+|+|++|+.+|+++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 211
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.08 E-value=4.4e-05 Score=71.76 Aligned_cols=93 Identities=25% Similarity=0.313 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 005133 550 HETALKNFQRAVQLNPRFAYGHTLCGHEYVALE----------DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK-- 617 (713)
Q Consensus 550 ~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g----------~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~-- 617 (713)
|+.|.+.++.....+|.+++.++..|..+..+. .+++|+.-|++++.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 456666667667777777777766666665542 34667777777788888888888888887766532
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 618 ---------FEFSEHHFRMAFQISPHSSVIMSYL 642 (713)
Q Consensus 618 ---------~~eA~~~l~kal~~~p~~~~~~~~l 642 (713)
|++|..+|++|...+|.+......|
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 6677777777777788776544433
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.06 E-value=6.9e-05 Score=66.11 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHHHHHH
Q 005133 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP----LPMYQKANIL 680 (713)
Q Consensus 605 ~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~----~~~~~la~~~ 680 (713)
+-.-|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+..+++++++..... .++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 345577888999999999999999999999999999999999999999999999999999965443 4678899999
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCC
Q 005133 681 LSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 681 ~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
..+|+-+.|...|+.+-++....
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999988876543
No 213
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.04 E-value=2.3e-05 Score=73.68 Aligned_cols=89 Identities=24% Similarity=0.275 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 005133 584 FENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK----------FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR-- 651 (713)
Q Consensus 584 ~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~----------~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~-- 651 (713)
|+.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++|+.++|+..++++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6788899999999999999999999988877633 5677788888888899998999999988887653
Q ss_pred ---------hHHHHHHHHHHHHhCCCChhH
Q 005133 652 ---------SGEAIEMMEKAILADKKNPLP 672 (713)
Q Consensus 652 ---------~eeAl~~l~kal~~~p~~~~~ 672 (713)
|++|..+|++|...+|.+...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 556666666666677765443
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.02 E-value=6.3e-06 Score=67.99 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005133 568 AYGHTLCGHEYVALEDFENGIRSYQSALRV---DA----RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g~~eeAl~~~~~al~~---~p----~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~ 631 (713)
..++..+|.+|...|++++|+.+|++++++ .+ ....++.++|.+|...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345566666666666666666666666644 11 11345566666666666666666666666554
No 215
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.02 E-value=0.0024 Score=71.51 Aligned_cols=155 Identities=15% Similarity=0.076 Sum_probs=118.0
Q ss_pred hcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 546 LQKDHETALKNFQRAVQLNPRF-AYG------HTLCGHEYV----ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~-~~a------~~~lg~~~~----~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~ 614 (713)
-.|+-+.+++.+.++.+...-. +.+ |+.....+. .....+.|.+++....+..|+..-.++..|+++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3588999999999987732111 111 111111111 24567889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCH---
Q 005133 615 QEKFEFSEHHFRMAFQISPHS----SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN-PLPMYQKANILLSLEKF--- 686 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~~~p~~----~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~-~~~~~~la~~~~~~g~~--- 686 (713)
.|+.++|++.|++++.....- ...++.+|+++..+++|++|..++.+..+...-. ....+..|.|+...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 999999999999988543322 2367889999999999999999999999865543 33456788899999999
Q ss_pred ----HHHHHHHHHHHHHC
Q 005133 687 ----DEALEVLEELKEYA 700 (713)
Q Consensus 687 ----~eA~~~~~kal~l~ 700 (713)
++|.++|.++-.+.
T Consensus 360 ~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 88888888876654
No 216
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0011 Score=65.13 Aligned_cols=129 Identities=12% Similarity=0.059 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC
Q 005133 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS------LEGMDIYSTVLYHLKEDMKLSYLAQELITTD-----RLA 533 (713)
Q Consensus 465 ~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~------~~a~~~la~~l~~~g~~~~A~~~~~kal~~~-----p~~ 533 (713)
.+..|..-+.+|...++|++|..++.++.+-..++ ..++...+.++..+..+.++..+++++..+. |+.
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 34455666778888899999999999998654433 2344555556666666777777777665432 222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALEDFENGIRSYQS 593 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~------~~a~~~lg~~~~~~g~~eeAl~~~~~ 593 (713)
...-...+--.....++++|+.+|++++.+-..+ ...+-..+.++.+..++++|-..+.+
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 2222222222333445555555555554442111 12233344445555555554444443
No 217
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.00 E-value=0.0002 Score=74.64 Aligned_cols=138 Identities=14% Similarity=0.042 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE-DMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~-~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 545 (713)
.+|..+.....+.+..+.|...|.++++..+.....|...|.+-++.++ .+.|..+|+.+++..|.+..+|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3566777777777888888888888886555667778888888777544 444888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 005133 546 LQKDHETALKNFQRAVQLNPRFA---YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNS 604 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~~---~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~ 604 (713)
..++.+.|..+|++++..-+... .+|......-...|+.+....+.+++.+..|.+...
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 88888888888888887755543 567777777777888888888888888887774433
No 218
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.99 E-value=0.00038 Score=75.03 Aligned_cols=198 Identities=13% Similarity=0.030 Sum_probs=135.0
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 496 SPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575 (713)
Q Consensus 496 ~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg 575 (713)
+.+....-..+..-.|+..+..+-+++.+++++++|+.+.+|..++.-. ..-..+|.++|+++++..... +...
T Consensus 164 d~D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~----lg~s 237 (539)
T PF04184_consen 164 DTDALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEAS----LGKS 237 (539)
T ss_pred CCCccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHh----hchh
Confidence 4455555566777788888888889999999999999888888777532 234678888888887653221 1111
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 005133 576 HEYVALEDFENGIRSYQSALRVDAR--HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH--SSVIMSYLGTAMHALKR 651 (713)
Q Consensus 576 ~~~~~~g~~eeAl~~~~~al~~~p~--~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~--~~~~~~~la~~~~~~g~ 651 (713)
......|..- +.....+. ...+...+|.|..+.|+.++|++.+...++..|. ...++.++..++..++.
T Consensus 238 ~~~~~~g~~~-------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~ 310 (539)
T PF04184_consen 238 QFLQHHGHFW-------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA 310 (539)
T ss_pred hhhhcccchh-------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC
Confidence 1111111111 11111111 2445678999999999999999999999998775 35588999999999999
Q ss_pred hHHHHHHHHHHHHh-CCCChhHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHHCCCChhH
Q 005133 652 SGEAIEMMEKAILA-DKKNPLPMYQKANILLS-LEK---------------FDEALEVLEELKEYAPRESGV 706 (713)
Q Consensus 652 ~eeAl~~l~kal~~-~p~~~~~~~~la~~~~~-~g~---------------~~eA~~~~~kal~l~P~~~~~ 706 (713)
|.++...+.+.-++ -|+.....+..|.+..+ .|+ -..|++.+.+|++.+|.-+..
T Consensus 311 Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 311 YADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 99999999886544 35556665655554332 222 234778999999999986654
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.92 E-value=0.0022 Score=68.44 Aligned_cols=101 Identities=11% Similarity=0.114 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHH-HHHhCCCCHH
Q 005133 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRA----SPYSLEGMDIYSTVLYH---LKEDMKLSYLAQE-LITTDRLAPQ 535 (713)
Q Consensus 464 ~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~----~p~~~~a~~~la~~l~~---~g~~~~A~~~~~k-al~~~p~~~~ 535 (713)
-.+.+...+-..|...++|+.-+++.+.+-.. -+......+.+|.++.+ .|+.++|...+.. +....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 35566677777888899999999888888776 44566677778888887 7888888888877 4455667778
Q ss_pred HHHHHHHHHHhc---------CCHHHHHHHHHHHHHhC
Q 005133 536 SWCAMGNCYSLQ---------KDHETALKNFQRAVQLN 564 (713)
Q Consensus 536 ~~~~la~~~~~~---------g~~~~Al~~~~kal~~~ 564 (713)
++..+|.+|... ...++|+..|.++.+.+
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 888888877542 12344555555555555
No 220
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.92 E-value=0.0058 Score=65.80 Aligned_cols=258 Identities=12% Similarity=0.012 Sum_probs=147.9
Q ss_pred HHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHH
Q 005133 440 YRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY--------SLEGMDIYSTVLY 511 (713)
Q Consensus 440 ~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~--------~~~a~~~la~~l~ 511 (713)
.+..+.|+|+.-.++........+ ...+..+......++++++..+.+++...--. .....+....-+.
T Consensus 6 eaaWrl~~Wd~l~~~~~~~~~~~~---~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq 82 (352)
T PF02259_consen 6 EAAWRLGDWDLLEEYLSQSNEDSP---EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ 82 (352)
T ss_pred HHHHhcCChhhHHHHHhhccCCCh---hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 345677888885555444433222 55566666667888999888888888764211 1111111111222
Q ss_pred HccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcc
Q 005133 512 HLKEDMKLSYLAQELITT---DRLAPQSWCAMGNCYSLQKDHE--TALKNFQRAVQL----NPRFAYGHTLCGHEYVALE 582 (713)
Q Consensus 512 ~~g~~~~A~~~~~kal~~---~p~~~~~~~~la~~~~~~g~~~--~Al~~~~kal~~----~p~~~~a~~~lg~~~~~~g 582 (713)
.+.+.+++..+....... ...-...|...-... ..+++ +-+-.+++.+-. .......|...+.+....|
T Consensus 83 ~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g 160 (352)
T PF02259_consen 83 QLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAG 160 (352)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCC
Confidence 222233333322111000 000001111111110 11111 111111222111 3344567777888888888
Q ss_pred CHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----------------------
Q 005133 583 DFENGIRSYQSALRVDA----RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI-SPH----------------------- 634 (713)
Q Consensus 583 ~~eeAl~~~~~al~~~p----~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~-~p~----------------------- 634 (713)
.++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.. ...
T Consensus 161 ~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (352)
T PF02259_consen 161 NFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISS 240 (352)
T ss_pred CcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccc
Confidence 88888888888776542 14567777788888888888888888777761 000
Q ss_pred ----------CHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-------------
Q 005133 635 ----------SSVIMSYLGTAMHAL------KRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK------------- 685 (713)
Q Consensus 635 ----------~~~~~~~la~~~~~~------g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~------------- 685 (713)
.+.++..+|...... +..++++..|.++++.+|....+|+.+|..+...=+
T Consensus 241 ~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~ 320 (352)
T PF02259_consen 241 TNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQED 320 (352)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhH
Confidence 023555666666666 788889999999999999999999988887664421
Q ss_pred ----HHHHHHHHHHHHHHCCC
Q 005133 686 ----FDEALEVLEELKEYAPR 702 (713)
Q Consensus 686 ----~~eA~~~~~kal~l~P~ 702 (713)
...|+..|-+++...++
T Consensus 321 ~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 321 RSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHHHHhhCCC
Confidence 13488888899988887
No 221
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.83 E-value=0.034 Score=62.21 Aligned_cols=241 Identities=15% Similarity=0.038 Sum_probs=129.8
Q ss_pred HHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 005133 441 RMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLS 520 (713)
Q Consensus 441 ~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~ 520 (713)
..+...+|.+|+.+++.+.+.... ...|-.++.-|...|+|+-|.++|.++-.. .-....|.+.|++..|.
T Consensus 741 aai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~~~--------~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEADLF--------KDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcchh--------HHHHHHHhccccHHHHH
Confidence 345667889999888876554332 234566788888889999999988776321 12234566778888888
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHH-------------HHHHHH------HHh----CCC-CHHHHHHHH
Q 005133 521 YLAQELITTDRLA-PQSWCAMGNCYSLQKDHETAL-------------KNFQRA------VQL----NPR-FAYGHTLCG 575 (713)
Q Consensus 521 ~~~~kal~~~p~~-~~~~~~la~~~~~~g~~~~Al-------------~~~~ka------l~~----~p~-~~~a~~~lg 575 (713)
.+.++... |.. ...|...+.-+-..|+|.+|. ..|.+. +++ .|+ ..+.+..+|
T Consensus 812 kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~ 889 (1636)
T KOG3616|consen 812 KLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFA 889 (1636)
T ss_pred HHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHH
Confidence 77766543 222 233444455555555555544 444332 111 121 134556667
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHH---------HHHH
Q 005133 576 HEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV--IMS---------YLGT 644 (713)
Q Consensus 576 ~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~--~~~---------~la~ 644 (713)
.-|...|+..+|...|-++-. |..-..+|...+-|++|.+..+. ....+.. +.+ ....
T Consensus 890 ~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriakt---egg~n~~k~v~flwaksiggdaavk 958 (1636)
T KOG3616|consen 890 KELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAKT---EGGANAEKHVAFLWAKSIGGDAAVK 958 (1636)
T ss_pred HHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHhc---cccccHHHHHHHHHHHhhCcHHHHH
Confidence 777777777777777766532 11222334444444444332211 1111111 000 0112
Q ss_pred HHHHcCChHHHHHHH------HHHHH-----hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 005133 645 AMHALKRSGEAIEMM------EKAIL-----ADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 645 ~~~~~g~~eeAl~~l------~kal~-----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
++-+.|-.++|+..- +-+.. ....-+.++..++..+...|++++|-+.|-.+++++.-+
T Consensus 959 llnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 959 LLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 233344444444321 11111 122346677778888888888888888888887776443
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.81 E-value=0.0069 Score=64.64 Aligned_cols=168 Identities=13% Similarity=0.006 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHH-HHhCCCCHHHH
Q 005133 500 LEGMDIYSTVLYHLKEDMKLSYLAQELITT----DRLAPQSWCAMGNCYSL---QKDHETALKNFQRA-VQLNPRFAYGH 571 (713)
Q Consensus 500 ~~a~~~la~~l~~~g~~~~A~~~~~kal~~----~p~~~~~~~~la~~~~~---~g~~~~Al~~~~ka-l~~~p~~~~a~ 571 (713)
.+....+...|....+++..+.+.+.+-.+ .+..+.+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455667777788888899888888887766 45566777888888888 89999999999884 44566778888
Q ss_pred HHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh----------
Q 005133 572 TLCGHEYVAL---------EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAF-QI---------- 631 (713)
Q Consensus 572 ~~lg~~~~~~---------g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal-~~---------- 631 (713)
..+|.+|... ...++|+..|+++.+++|+. ..-.+++.++...|.-.+....+++.. ++
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 8888887542 34678888888888888653 344455556666664322222222211 11
Q ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005133 632 -SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668 (713)
Q Consensus 632 -~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~ 668 (713)
.-.+.+.+..++.+..-.|++++|++++++++.+.|.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 1122334445666666677777777777777776543
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.75 E-value=7.2e-05 Score=54.23 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 671 LPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
.++..+|.+|..+|++++|++.|+++++.+|+++.+|..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 466777777777777777777777777777777777777764
No 224
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00031 Score=68.56 Aligned_cols=92 Identities=22% Similarity=0.277 Sum_probs=72.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005133 540 MGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFE 619 (713)
Q Consensus 540 la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~ 619 (713)
-|..++...+|..|+.+|.+++.++|..+..|.+.+.++++..+++.+....+++++++|+....++.+|.+......|+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 35556666777888888888888888877777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHh
Q 005133 620 FSEHHFRMAFQI 631 (713)
Q Consensus 620 eA~~~l~kal~~ 631 (713)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888887554
No 225
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00013 Score=71.21 Aligned_cols=93 Identities=19% Similarity=0.302 Sum_probs=87.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 005133 573 LCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRS 652 (713)
Q Consensus 573 ~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 652 (713)
.-|..++.-.+|+.|+.+|-+++.++|..+..|.+.+.+|++..+|+.+..-..+++++.|+....++.+|.+......|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34666777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 005133 653 GEAIEMMEKAILA 665 (713)
Q Consensus 653 eeAl~~l~kal~~ 665 (713)
++|+..++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999765
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.63 E-value=0.14 Score=55.02 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=64.5
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH----------------------------------------------HHH
Q 005133 608 LGMVYLRQEK-FEFSEHHFRMAFQISPHSSV----------------------------------------------IMS 640 (713)
Q Consensus 608 lg~~y~~~g~-~~eA~~~l~kal~~~p~~~~----------------------------------------------~~~ 640 (713)
-|.-+.+.|. -++|+.+++.+++..+.+.. .-.
T Consensus 385 ~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 385 GAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 3444566665 77888888888877766522 111
Q ss_pred HH--HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 005133 641 YL--GTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEE 695 (713)
Q Consensus 641 ~l--a~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~k 695 (713)
.+ |..++..|+|.++.-+-.=..++.| .+.++..+|.+++...+|++|..++.+
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 22 3446677888888888777788888 899999999999999999999888765
No 227
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0088 Score=59.48 Aligned_cols=164 Identities=16% Similarity=0.126 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 005133 485 AERAFTLARRASPYSLEGMDIYSTVLYHLK-EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHE-TALKNFQRAVQ 562 (713)
Q Consensus 485 A~~~~~kal~~~p~~~~a~~~la~~l~~~g-~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~-~Al~~~~kal~ 562 (713)
|+.+-+.++.++|-+-..|...-.++.+++ +..+-+.++.+.++.+|++..+|...-.+....|++. .-+++.+.++.
T Consensus 62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~ 141 (318)
T KOG0530|consen 62 ALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLD 141 (318)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHh
Confidence 334444444555554444444444444433 2334444455555555555555555555555555544 44555555555
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHhCCCCH
Q 005133 563 LNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR-QE-----KFEFSEHHFRMAFQISPHSS 636 (713)
Q Consensus 563 ~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~-~g-----~~~eA~~~l~kal~~~p~~~ 636 (713)
.+..+-.+|...-.+...-+.++.-+.+..+.++.+-.+-.+|+..-.+... .| ..+.-+.+..+.+...|++.
T Consensus 142 ~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~Ne 221 (318)
T KOG0530|consen 142 DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNE 221 (318)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCc
Confidence 5555555555555555555555555555555555544444443322111111 11 12223344444555555555
Q ss_pred HHHHHHHHHHHH
Q 005133 637 VIMSYLGTAMHA 648 (713)
Q Consensus 637 ~~~~~la~~~~~ 648 (713)
.+|..|.-++..
T Consensus 222 SaWnYL~G~l~~ 233 (318)
T KOG0530|consen 222 SAWNYLKGLLEL 233 (318)
T ss_pred cHHHHHHHHHHh
Confidence 555555555443
No 228
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.57 E-value=0.029 Score=64.37 Aligned_cols=248 Identities=12% Similarity=0.058 Sum_probs=158.9
Q ss_pred cCCHHHHHHHHHcCccc-----CCCCHHHHHHHHHHHHHh----h-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 445 MYRCKDALDVYLKLPHK-----HYNTGWVLSQVGKAYFEV----V-DYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~-----~~~~~~~~~~lg~~~~~~----g-~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
..+.+.|+.+|..+... ....+.+.+.+|.+|... . +++.|+.+|.++-... ++.+.+.+|.++..-.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT 339 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC
Confidence 36778888888776541 111344667788888774 2 6777888888887764 4556666777666554
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCHHH
Q 005133 515 ---EDMKLSYLAQELITTDRLAPQSWCAMGNCYSL----QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL-EDFEN 586 (713)
Q Consensus 515 ---~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~----~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~-g~~ee 586 (713)
+...|..+|..+... .+..+.+.++.+|.. ..+...|..++.++.+.. .+.+...++.++..- ++++.
T Consensus 340 ~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~ 415 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDT 415 (552)
T ss_pred ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccH
Confidence 456788888777654 346777777777764 346778888888887776 344444444443332 66666
Q ss_pred HHHHHHHHHHhCCCCHHH----HHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHH
Q 005133 587 GIRSYQSALRVDARHYNS----WYGLGMVYLRQ----EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL----KRSGE 654 (713)
Q Consensus 587 Al~~~~~al~~~p~~~~~----~~~lg~~y~~~----g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~----g~~ee 654 (713)
+.-.+....+..-+.+.. +.......... .+.+.+...+.++.. ..+..+...+|.+|+.- .+++.
T Consensus 416 ~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 416 ALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHH
Confidence 666665554443221111 11111111111 245566666666543 35667788888888875 35899
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCC
Q 005133 655 AIEMMEKAILADKKNPLPMYQKANILLSL---EKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 655 Al~~l~kal~~~p~~~~~~~~la~~~~~~---g~~~eA~~~~~kal~l~P~~ 703 (713)
|...|.++.... ....+++|.++..- .....|.++|+++.+.+...
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 999999998877 88899999998732 12789999999998876653
No 229
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.57 E-value=0.17 Score=54.32 Aligned_cols=122 Identities=15% Similarity=0.072 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHH---------hCC---CC
Q 005133 537 WCAMGNCYSLQKD-HETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIR--SYQSALR---------VDA---RH 601 (713)
Q Consensus 537 ~~~la~~~~~~g~-~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~--~~~~al~---------~~p---~~ 601 (713)
+..-|.-++..|. -++|+..++.+++..+.+...-...- .+-...|.+|+. .+-+.+. +.| .+
T Consensus 382 L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e 459 (549)
T PF07079_consen 382 LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISE 459 (549)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccH
Confidence 3445666777776 77888888888888777653322111 111111222221 1111111 111 23
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005133 602 YNSWYGL--GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEK 661 (713)
Q Consensus 602 ~~~~~~l--g~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~k 661 (713)
.+.-+.| |..++.+|+|.++.-+-.=..++.| ++.++..+|.+++..++|++|..++..
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4444444 3456778899998888877788888 888999999999999999999988875
No 230
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.57 E-value=0.0012 Score=71.74 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=84.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 005133 614 RQEKFEFSEHHFRMAFQISPHSSV-IMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEV 692 (713)
Q Consensus 614 ~~g~~~eA~~~l~kal~~~p~~~~-~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 692 (713)
..|+...|++++..|+-..|.... .+.++|.++.+.|-.-+|-.++.+++.+....+..++.+|.++..+.+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 357888899999999888776544 4678999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHCCCChhHHH
Q 005133 693 LEELKEYAPRESGVYA 708 (713)
Q Consensus 693 ~~kal~l~P~~~~~~~ 708 (713)
|+.+++++|+++....
T Consensus 699 ~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 699 FRQALKLTTKCPECEN 714 (886)
T ss_pred HHHHHhcCCCChhhHH
Confidence 9999999999887643
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.53 E-value=0.00019 Score=51.96 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=9.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005133 610 MVYLRQEKFEFSEHHFRMAFQISPHS 635 (713)
Q Consensus 610 ~~y~~~g~~~eA~~~l~kal~~~p~~ 635 (713)
.+|...|++++|++.|+++++.+|++
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 33333333333333333333333333
No 232
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.52 E-value=9.4e-05 Score=79.27 Aligned_cols=110 Identities=18% Similarity=0.135 Sum_probs=91.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005133 572 TLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR 651 (713)
Q Consensus 572 ~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~ 651 (713)
-..+..++..+.|+.|+..|.++++++|+.+..+-+.+.++.+.+++..|+.-+.+|++.+|....+|+..|.+...+++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34466677778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005133 652 SGEAIEMMEKAILADKKNPLPMYQKANILL 681 (713)
Q Consensus 652 ~eeAl~~l~kal~~~p~~~~~~~~la~~~~ 681 (713)
+.+|+..|+....+.|+++.+...+..|-.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 888888888888888888888776666543
No 233
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.51 E-value=0.028 Score=61.23 Aligned_cols=152 Identities=7% Similarity=0.057 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 005133 550 HETALKNFQRAVQLNPR-FAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMV-YLRQEKFEFSEHHFRM 627 (713)
Q Consensus 550 ~~~Al~~~~kal~~~p~-~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~-y~~~g~~~eA~~~l~k 627 (713)
++.-..++++++.+... ..-+|..+-..-.+..-...|..+|.++-+..-....++..-|.+ |...++.+-|.+.|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 44444455554444221 122333333333444445555555555544322222222222222 2334555555555555
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 005133 628 AFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA--DKK-NPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 628 al~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~--~p~-~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P 701 (713)
.++..++.+.........+...++-..|...|++++.. .++ ...+|..+-..-..-|+...+++.-++-....|
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 55555555555555555555555555555555555544 221 234444444445555555555555444444444
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0071 Score=59.51 Aligned_cols=208 Identities=10% Similarity=-0.029 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH
Q 005133 500 LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP------QSWCAMGNCYSLQKDHETALKNFQRAVQL-----NPRFA 568 (713)
Q Consensus 500 ~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~------~~~~~la~~~~~~g~~~~Al~~~~kal~~-----~p~~~ 568 (713)
...+..-+.++...+++++|...+.++.+-...+. .++-..+.+......+.++..+|+++..+ .|+.+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 44566677788888999999999999986544332 34445667777888999999999999876 44444
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCH
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI------SPHSS 636 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~------~~~~~~lg~~y~~~g~~~eA~~~l~kal~~------~p~~~ 636 (713)
..-...+--.....+.++|+.+|++++.+...+ .+.+-..+.+|.+..++++|-..+.+-... .+...
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 444555555677888999999999998874432 345667788899999999998887764332 23333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHH
Q 005133 637 VIMSYLGTAMHALKRSGEAIEMMEKAILA----DKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 637 ~~~~~la~~~~~~g~~eeAl~~l~kal~~----~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 708 (713)
..+.....+|....+|..|..+++...++ .+++..+..+|-..| ..|+.++....+.--.-..-++..++.
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~sp~~r~MDneya~l 265 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSSPTVRNMDNEYAHL 265 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcChHhhhhhHHHHHH
Confidence 45555566667777999999999987765 345566666666555 568888877766544444444444333
No 235
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0011 Score=64.93 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 568 AYGHTLCGHEYVALEDFENGIRSYQSALRV--------DARHY----------NSWYGLGMVYLRQEKFEFSEHHFRMAF 629 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g~~eeAl~~~~~al~~--------~p~~~----------~~~~~lg~~y~~~g~~~eA~~~l~kal 629 (713)
..++...|.-++..|+|.+|...|+.|+.. .|..+ ..+.+++.|+...|+|-+++++...++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456778899999999999999999998754 34433 346677888888888888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005133 630 QISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669 (713)
Q Consensus 630 ~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~ 669 (713)
...|.+..+++..|.++...=+..+|...|.++++++|.-
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 8888888888888888888888888888888888888754
No 236
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.49 E-value=0.018 Score=66.00 Aligned_cols=252 Identities=12% Similarity=0.059 Sum_probs=173.7
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc---
Q 005133 448 CKDALDVYLKLPHKHYNTGWVLSQVGKAYFEV-----VDYLEAERAFTLARRA-----SPYSLEGMDIYSTVLYHLK--- 514 (713)
Q Consensus 448 ~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~eA~~~~~kal~~-----~p~~~~a~~~la~~l~~~g--- 514 (713)
..+|..+++.+.+.. +..+...+|.+|+.- +|.+.|+.+|+.+.+. .-..+.+...+|.+|.+-.
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 456777777665443 456667788887765 6999999999999871 1124556778888888753
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHH
Q 005133 515 --EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK---DHETALKNFQRAVQLNPRFAYGHTLCGHEYVA----LEDFE 585 (713)
Q Consensus 515 --~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g---~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~----~g~~e 585 (713)
+...|..++.++.+... +.+.+.+|.+|.... ++..|.++|..|... .+..+.+.++.+|.. ..+.+
T Consensus 306 ~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 57789999998887754 667888888887765 678999999998764 567888888888765 34789
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc----CChHHHH
Q 005133 586 NGIRSYQSALRVDARHYNSWYGLGMVYLRQ-EKFEFSEHHFRMAFQISPHSSV----IMSYLGTAMHAL----KRSGEAI 656 (713)
Q Consensus 586 eAl~~~~~al~~~p~~~~~~~~lg~~y~~~-g~~~eA~~~l~kal~~~p~~~~----~~~~la~~~~~~----g~~eeAl 656 (713)
.|..+|+++.+.. .+.+...++..+... ++++.+.-.+....+..-..+. .+.......... .+.+.+.
T Consensus 382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence 9999999999887 456566666655443 7777776666555444322221 111111111111 1445566
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 657 EMMEKAILADKKNPLPMYQKANILLSL----EKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 657 ~~l~kal~~~p~~~~~~~~la~~~~~~----g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
..+.++.. ..+..+...+|.+|..- .+++.|...|.++.... ....++||.
T Consensus 460 ~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~ 514 (552)
T KOG1550|consen 460 SLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGY 514 (552)
T ss_pred HHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhh
Confidence 66666543 44678888899988765 36999999999998877 677777663
No 237
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.47 E-value=0.12 Score=57.34 Aligned_cols=257 Identities=14% Similarity=0.079 Sum_probs=159.9
Q ss_pred HHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Q 005133 449 KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY-HLKEDMKLSYLAQELI 527 (713)
Q Consensus 449 ~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~-~~g~~~~A~~~~~kal 527 (713)
+.+...|...+...|.....|...|..-+..|..+.+++.|++++.--|.....|..+...+. ..|+.+.....|+++.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 444555666666777777777777777777788888888888887777777777665544433 3455566666677766
Q ss_pred HhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH----------------------H----------
Q 005133 528 TTDRLA---PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGH----------------------T---------- 572 (713)
Q Consensus 528 ~~~p~~---~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~----------------------~---------- 572 (713)
.....+ ...|-..-..-..++++..-...|++.++.--.....+ .
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 654432 23444444444555555555555555544311100000 0
Q ss_pred -------------------------------HHH-------HHHHHccCHHHHHHHHHHHHHh-----CCC---CHHHHH
Q 005133 573 -------------------------------LCG-------HEYVALEDFENGIRSYQSALRV-----DAR---HYNSWY 606 (713)
Q Consensus 573 -------------------------------~lg-------~~~~~~g~~eeAl~~~~~al~~-----~p~---~~~~~~ 606 (713)
.+. .++.......+.+..++..+.. .|. ....|.
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~ 301 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR 301 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence 000 0011111112222222222221 121 234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHcCC
Q 005133 607 GLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA-DKKNPLPMYQKANILLSLEK 685 (713)
Q Consensus 607 ~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~-~p~~~~~~~~la~~~~~~g~ 685 (713)
.....-...|+++...-.|++++--.....+.|...+......|+.+-|...+.++.++ .+..+.+...-+.+....|+
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n 381 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGN 381 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhcc
Confidence 66666778888999999999888877777888888888888888888888888888776 46677778888888888889
Q ss_pred HHHHHHHHHHHHHHCCCChh
Q 005133 686 FDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 686 ~~eA~~~~~kal~l~P~~~~ 705 (713)
+..|...|++...-.|+...
T Consensus 382 ~~~A~~~lq~i~~e~pg~v~ 401 (577)
T KOG1258|consen 382 FDDAKVILQRIESEYPGLVE 401 (577)
T ss_pred HHHHHHHHHHHHhhCCchhh
Confidence 99999999888887776544
No 238
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.45 E-value=0.0002 Score=48.52 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCc
Q 005133 101 AAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPL 133 (713)
Q Consensus 101 a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~ 133 (713)
|.+++.+|.+|..+|+.++|+++|++||++||.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 457999999999999999999999999999996
No 239
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.025 Score=56.33 Aligned_cols=204 Identities=9% Similarity=0.015 Sum_probs=161.4
Q ss_pred HccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH-HHH
Q 005133 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEV-VDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDM-KLS 520 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~-g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~-~A~ 520 (713)
....+-..|+.+...++...|.+..+|...-.++..+ .+..+-++++.++++.+|.+-..|...-.+...+|+.. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 3456779999999999999999999988888887776 57888899999999999999999999999999999877 778
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------ccCHHHHHHHHHHH
Q 005133 521 YLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA------LEDFENGIRSYQSA 594 (713)
Q Consensus 521 ~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~------~g~~eeAl~~~~~a 594 (713)
.+...++..+.++..+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .-..+.-+.+..+.
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~ 213 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDK 213 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999877666666543222111 12345567788889
Q ss_pred HHhCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Q 005133 595 LRVDARHYNSWYGLGMVYLR-QE--KFEFSEHHFRMAF-QISPHSSVIMSYLGTAM 646 (713)
Q Consensus 595 l~~~p~~~~~~~~lg~~y~~-~g--~~~eA~~~l~kal-~~~p~~~~~~~~la~~~ 646 (713)
+...|++..+|..|.-++.. .| .+.+........+ ......+..+..+..+|
T Consensus 214 I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 214 ILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 99999999999999988886 44 2444455554444 34445566666666665
No 240
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.41 E-value=0.098 Score=54.52 Aligned_cols=53 Identities=19% Similarity=0.060 Sum_probs=41.8
Q ss_pred HccCCHHHHHHHHHcCccc----CCC----CHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHh
Q 005133 443 SCMYRCKDALDVYLKLPHK----HYN----TGWVLSQVGKAYFEVV-DYLEAERAFTLARRA 495 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~----~~~----~~~~~~~lg~~~~~~g-~~~eA~~~~~kal~~ 495 (713)
..+|+++.|..++.++... .|. -...++..|...+..+ ++++|..+++++.++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4688999999999987442 232 3456788888888888 999999999999887
No 241
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.41 E-value=0.024 Score=61.01 Aligned_cols=236 Identities=13% Similarity=0.049 Sum_probs=140.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Q 005133 472 VGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTD--------RLAPQSWCAMGNC 543 (713)
Q Consensus 472 lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~--------p~~~~~~~~la~~ 543 (713)
.+.+...+|+|+.-.++....- ....+..+..+......++++++..+.+++...- .......+..-..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~---~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSN---EDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhcc---CCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4567888899998333332222 2223555556666668888888888777765432 1111111111112
Q ss_pred HHhcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHh----CCCCHHHHHHHHHHHHH
Q 005133 544 YSLQKDHETALKNFQRAVQL---NPRFAYGHTLCGHEYVALEDFE--NGIRSYQSALRV----DARHYNSWYGLGMVYLR 614 (713)
Q Consensus 544 ~~~~g~~~~Al~~~~kal~~---~p~~~~a~~~lg~~~~~~g~~e--eAl~~~~~al~~----~p~~~~~~~~lg~~y~~ 614 (713)
+....+.+++..+....... ...-...|...-.. ...+++ +-+-.++..+-. .......|..++.+..+
T Consensus 81 lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk 158 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARK 158 (352)
T ss_pred HhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 22233344444443221100 00001111111100 011111 111122222222 34557789999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C-C--------------------
Q 005133 615 QEKFEFSEHHFRMAFQISP----HSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD-K-K-------------------- 668 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~~~p----~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~-p-~-------------------- 668 (713)
.|.++.|...+.++....+ ..+.+....+.++...|+..+|+..++..+... . .
T Consensus 159 ~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T PF02259_consen 159 AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVI 238 (352)
T ss_pred CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccc
Confidence 9999999999999987652 256788889999999999999999998888711 1 0
Q ss_pred ------------ChhHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 669 ------------NPLPMYQKANILLSL------EKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 669 ------------~~~~~~~la~~~~~~------g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
...++..+|...... +..++++..|.++.+++|....+|+.+|.
T Consensus 239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 123455666666666 88899999999999999999999988764
No 242
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.38 E-value=0.00017 Score=48.93 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=15.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005133 591 YQSALRVDARHYNSWYGLGMVYLRQEKFEFS 621 (713)
Q Consensus 591 ~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA 621 (713)
|+++++++|+++.+|+++|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444444444444444
No 243
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.37 E-value=0.00027 Score=75.78 Aligned_cols=101 Identities=14% Similarity=0.200 Sum_probs=54.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005133 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS 621 (713)
Q Consensus 542 ~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA 621 (713)
.-++..++|+.|+..|.+|++++|+.+..+...+..+...+++..|+.-+.++++.+|....+|+..|.+....+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhCCCCHHHHHHH
Q 005133 622 EHHFRMAFQISPHSSVIMSYL 642 (713)
Q Consensus 622 ~~~l~kal~~~p~~~~~~~~l 642 (713)
+..|++...+.|+++.+...+
T Consensus 92 ~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 92 LLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHhhhcCcCcHHHHHHH
Confidence 555555555555555544433
No 244
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.086 Score=56.84 Aligned_cols=242 Identities=14% Similarity=0.140 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHH-------HHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 005133 425 GASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGW-------VLSQVGKAYFEVVDYLEAERAFTLARRASP 497 (713)
Q Consensus 425 ~~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~-------~~~~lg~~~~~~g~~~eA~~~~~kal~~~p 497 (713)
..-++.....-+..||....++.-++|+...+++.+.+-..+. .+-.+..|-.-.|++.+|++....+.+...
T Consensus 275 aLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~ 354 (629)
T KOG2300|consen 275 ALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCT 354 (629)
T ss_pred hhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3334444444445566555555556666666665544422221 233344455556788888877777765432
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH--HHHHHH
Q 005133 498 YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR-FA--YGHTLC 574 (713)
Q Consensus 498 ~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~-~~--~a~~~l 574 (713)
..+.-... ....+..++.+|.....-+.++.|...|..+.+.... +. ..-.++
T Consensus 355 r~p~~~Ll------------------------r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 355 RFPTPLLL------------------------RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred hCCchHHH------------------------HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 22110000 0012456677777777888888888888888876332 22 334567
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 005133 575 GHEYVALEDFENGIRSYQSALRVDARH----------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVI 638 (713)
Q Consensus 575 g~~~~~~g~~eeAl~~~~~al~~~p~~----------~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~------~~~ 638 (713)
|.+|...++-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+.+.+++.... +-.
T Consensus 411 Ai~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~ 487 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACS 487 (629)
T ss_pred HHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 8888887775544333333 34442 3456777777888889999999988888875211 124
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC---CCChhHH---HHHHHHHHHcCC--HHHHHHHH
Q 005133 639 MSYLGTAMHALKRSGEAIEMMEKAILAD---KKNPLPM---YQKANILLSLEK--FDEALEVL 693 (713)
Q Consensus 639 ~~~la~~~~~~g~~eeAl~~l~kal~~~---p~~~~~~---~~la~~~~~~g~--~~eA~~~~ 693 (713)
+..+|.+..-.|+..++.....-++++. |+.+..+ ..+-.+|...|+ .+...+.|
T Consensus 488 LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 488 LVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 4567888888888888888888777664 3333322 234556777776 44444443
No 245
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.34 E-value=0.1 Score=54.69 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCC
Q 005133 533 APQSWCAMGNCYSL----QKDHETALKNFQRAVQLNPRF-AYGHTLCGHEYVALE-------DFENGIRSYQSALRVDAR 600 (713)
Q Consensus 533 ~~~~~~~la~~~~~----~g~~~~Al~~~~kal~~~p~~-~~a~~~lg~~~~~~g-------~~eeAl~~~~~al~~~p~ 600 (713)
.+.+.+.+|.+|.. ..+..+|..+|+++.+..-.. ..+.+.+|..|..-. +...|+..|.++....
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 34455555555554 336667777777766653332 233555665555431 2236777777766554
Q ss_pred CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 601 HYNSWYGLGMVYLRQ----EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (713)
Q Consensus 601 ~~~~~~~lg~~y~~~----g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 650 (713)
+..+.+.+|.+|..- .++++|..+|.++.+... ....+.++ +++..|
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 566777777666542 367777777777776654 66666666 555544
No 246
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.34 E-value=0.052 Score=56.90 Aligned_cols=162 Identities=18% Similarity=0.198 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC-HHHH
Q 005133 535 QSWCAMGNCYSL----QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA----LEDFENGIRSYQSALRVDARH-YNSW 605 (713)
Q Consensus 535 ~~~~~la~~~~~----~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~----~g~~eeAl~~~~~al~~~p~~-~~~~ 605 (713)
.....++.+|.. ..+..+|+.+|+.+. ....+.+.+.+|.+|.. ..+..+|..+|+++.+..-.. ..+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 444555555543 345888999999554 45667888889999887 459999999999999875433 3448
Q ss_pred HHHHHHHHHc----C-C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCChhHHH
Q 005133 606 YGLGMVYLRQ----E-K--FEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL----KRSGEAIEMMEKAILADKKNPLPMY 674 (713)
Q Consensus 606 ~~lg~~y~~~----g-~--~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~----g~~eeAl~~l~kal~~~p~~~~~~~ 674 (713)
+.+|.+|..- + . ...|+..|.++.... ++.+...+|.+|..- .++++|..+|.++.+... ....+
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~ 227 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACY 227 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHH
Confidence 8888888764 2 3 337999999988775 778889999888663 488999999999999876 88888
Q ss_pred HHHHHHHHcC---------------CHHHHHHHHHHHHHHCCCC
Q 005133 675 QKANILLSLE---------------KFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 675 ~la~~~~~~g---------------~~~eA~~~~~kal~l~P~~ 703 (713)
.++ ++...| +...|..++.++....+..
T Consensus 228 ~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 228 NLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 888 766666 8888899988887765543
No 247
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0038 Score=61.27 Aligned_cols=105 Identities=9% Similarity=0.041 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQL--------NPRFA----------YGHTLCGHEYVALEDFENGIRSYQSAL 595 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~--------~p~~~----------~a~~~lg~~~~~~g~~eeAl~~~~~al 595 (713)
..++...|+-++..|+|.+|...|+.|+.. .|..+ ..+.++..|+...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 567888999999999999999999998753 44443 456788999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005133 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVI 638 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~ 638 (713)
..+|.+..+++..|.+....-+..+|..-|.++++++|.-..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999875543
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0068 Score=61.63 Aligned_cols=131 Identities=11% Similarity=0.044 Sum_probs=86.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL-EGMDIYSTVLYH 512 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~-~a~~~la~~l~~ 512 (713)
..+.++..++..|++.+|...|..++...|.+..+...++.+|...|+.+.|...+...-....... ..+......+.+
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 3567777888889999999999999888888888888999999999999888887776533322211 111111122222
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005133 513 LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNP 565 (713)
Q Consensus 513 ~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p 565 (713)
.....+.. .+++.+..+|++.++-+.+|..+...|+.++|++.+-..++.+.
T Consensus 216 aa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 216 AAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 22222221 23455566777777777777777777777777777776666543
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.021 Score=58.20 Aligned_cols=147 Identities=12% Similarity=0.049 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Q 005133 539 AMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-YNSWYGLGMVYLRQEK 617 (713)
Q Consensus 539 ~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~-~~~~~~lg~~y~~~g~ 617 (713)
..+.-....|++.+|...|..++...|+...+...++.+|...|+.+.|..++...-....+. ..........+.+...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 334445555666666666666666666666666666666666666666665555422111111 1110001112222222
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHcCCH
Q 005133 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK--KNPLPMYQKANILLSLEKF 686 (713)
Q Consensus 618 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p--~~~~~~~~la~~~~~~g~~ 686 (713)
..+. ..+++.+..+|++..+-+.+|..+...|+.++|++.+-..+..+. .+..+...+-.++...|.-
T Consensus 219 ~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 219 TPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 2211 223334455666666666666666666666666666666665532 3445555555555555533
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.29 E-value=0.00046 Score=46.60 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCc
Q 005133 101 AAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPL 133 (713)
Q Consensus 101 a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~ 133 (713)
|.+++.+|.+|..+|+.++|+++|++||+++|.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 457999999999999999999999999999996
No 251
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.29 E-value=0.00026 Score=48.09 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=17.6
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 005133 659 MEKAILADKKNPLPMYQKANILLSLEKFDEAL 690 (713)
Q Consensus 659 l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~ 690 (713)
|+++++++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
No 252
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.27 E-value=0.0074 Score=56.20 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=68.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 005133 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFE-FSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSG 653 (713)
Q Consensus 575 g~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~-eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~e 653 (713)
|......++.+.++..+++++.+...+.-.-... ..|- .....+... ...++..++..+...|+++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence 4444556677777777777776643321100000 1111 111222221 1235566788888889999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 654 EAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 654 eAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
+|+..+++++..+|-+..++..+..+|...|+..+|+..|+++.+
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999998888999999999999999999988888755
No 253
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.021 Score=66.03 Aligned_cols=237 Identities=13% Similarity=0.010 Sum_probs=117.8
Q ss_pred HHHHHccCCHHHHHHHHHcCcc----------------------cCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q 005133 439 GYRMSCMYRCKDALDVYLKLPH----------------------KHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRAS 496 (713)
Q Consensus 439 a~~l~~~g~~~eAi~~l~~~~~----------------------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~ 496 (713)
|......+-|++|..+|.+.-. ..-+.+.+|..+|.+..+.|...+|++.|-++
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 4455666677788877776411 11234556666777766667777776666554
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 497 PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGH 576 (713)
Q Consensus 497 p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~ 576 (713)
+++..+.....+..+.|.+++...++.-+-+.... +.+-..+...|.+.++..+-.+++ ..|+.+. .-..|.
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi-----~gpN~A~-i~~vGd 1202 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFI-----AGPNVAN-IQQVGD 1202 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHh-----cCCCchh-HHHHhH
Confidence 44455555556666666666666655544433221 111222222333333332222111 1122111 112333
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------C--
Q 005133 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS---------------------P-- 633 (713)
Q Consensus 577 ~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~---------------------p-- 633 (713)
-++..+.|+.|.-+|.. ..-|..|+..+...|+|+.|....++|-... .
T Consensus 1203 rcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~ 1274 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLN 1274 (1666)
T ss_pred HHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCce
Confidence 33344444444333332 1223444555555555555554444432110 0
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 634 --HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 634 --~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
-+++-+-.+...|...|-+++-+..++.++.+...+...+..||.+|.+- ++++-.+.++-.
T Consensus 1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 01223345666677777777777777777777666666666677666543 455555555443
No 254
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.26 E-value=0.044 Score=59.81 Aligned_cols=186 Identities=11% Similarity=0.000 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 005133 482 YLEAERAFTLARRASP-YSLEGMDIYSTVLYHLK---EDMKLSYLAQELITTDRLAP-QSWCAMGNCYSLQKDHETALKN 556 (713)
Q Consensus 482 ~~eA~~~~~kal~~~p-~~~~a~~~la~~l~~~g---~~~~A~~~~~kal~~~p~~~-~~~~~la~~~~~~g~~~~Al~~ 556 (713)
-++|..+|++++..-- .+...++.++..-...- +.+.....+++++.+...++ -+|+.+-+.-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 6778888888876532 22333333333322222 25666677888887655444 4677777777777888999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Q 005133 557 FQRAVQLNPRFAYGHTLCGHE-YVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI--SP 633 (713)
Q Consensus 557 ~~kal~~~p~~~~a~~~lg~~-~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~--~p 633 (713)
|.++-+.......++..-|.+ |...++.+-|..+|+-.++..++.+..-......+...++-..|..+|++++.. .+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 999987644443444444433 667899999999999999999999999999999999999999999999999987 33
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005133 634 H-SSVIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (713)
Q Consensus 634 ~-~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p 667 (713)
+ ...+|..+-..-..-|+...+++.-++-....|
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 2 346787777777888999988888777666655
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.24 E-value=0.014 Score=65.37 Aligned_cols=139 Identities=14% Similarity=0.039 Sum_probs=62.7
Q ss_pred hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 005133 479 VVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH------------LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSL 546 (713)
Q Consensus 479 ~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~------------~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 546 (713)
.||-+.+++.+.++.+. ++-...+..+..+.++ ......+..+++...+..|+..-..+..|+++..
T Consensus 201 ~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 47777777777777662 2211111111111111 1123444455555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCH
Q 005133 547 QKDHETALKNFQRAVQLNPRF----AYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-YNSWYGLGMVYLRQEKF 618 (713)
Q Consensus 547 ~g~~~~Al~~~~kal~~~p~~----~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~-~~~~~~lg~~y~~~g~~ 618 (713)
.|+.++|++.|++++...... .-.++.+|+++..+.+|++|..+|.+..+.+.-. ....+..|.++...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 555555555555544321111 1223444555555555555555555554443321 22223334444444444
No 256
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.24 E-value=0.22 Score=57.83 Aligned_cols=231 Identities=13% Similarity=0.002 Sum_probs=149.4
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-
Q 005133 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY---------SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP- 534 (713)
Q Consensus 465 ~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~---------~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~- 534 (713)
.+......+......+++.+|..+..++...-+. ..+.....+.+....|+.+++..+.+.++..-|...
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4555667777888889999999998888765443 134445667788888999999999999998776543
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CCHH--HHHHHHHHHHHccC--HHHHHHHHHHHHH----hC
Q 005133 535 ----QSWCAMGNCYSLQKDHETALKNFQRAVQLNP----RFAY--GHTLCGHEYVALED--FENGIRSYQSALR----VD 598 (713)
Q Consensus 535 ----~~~~~la~~~~~~g~~~~Al~~~~kal~~~p----~~~~--a~~~lg~~~~~~g~--~eeAl~~~~~al~----~~ 598 (713)
.++..+|.+..-.|++++|+.+...+.+... .... +....+.++..+|+ +.+.+..|...-. ..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 5677888999999999999999988887732 2222 33445677788883 3333333333222 23
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC--HH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-h
Q 005133 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS----PHS--SV-IMSYLGTAMHALKRSGEAIEMMEKAILADKKN-P 670 (713)
Q Consensus 599 p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~----p~~--~~-~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~-~ 670 (713)
|-+.......+.++...-+++.+.....+.++.. |.. .. +++.++.+++..|++++|...+.+...+.-.. +
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 3333333334444443334666666655555542 222 22 33578999999999999999998887763322 2
Q ss_pred hHH----HH--HHHHHHHcCCHHHHHHHHHH
Q 005133 671 LPM----YQ--KANILLSLEKFDEALEVLEE 695 (713)
Q Consensus 671 ~~~----~~--la~~~~~~g~~~eA~~~~~k 695 (713)
.++ .. ........|++++|.....+
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 221 11 22223467888888887776
No 257
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.20 E-value=0.17 Score=58.73 Aligned_cols=204 Identities=14% Similarity=0.046 Sum_probs=137.5
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-
Q 005133 498 YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRL---------APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF- 567 (713)
Q Consensus 498 ~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~---------~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~- 567 (713)
.++......+..+....++.+|..++.++...-+. ..+..-..|.+....|++++|+++.+.++..-|..
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 34566677788888889999999988887765433 12344456888899999999999999999987764
Q ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHH--HHHHHHHHHHcC--CHHHHHHHHHHH----HHh
Q 005133 568 ----AYGHTLCGHEYVALEDFENGIRSYQSALRVD----ARHYNS--WYGLGMVYLRQE--KFEFSEHHFRMA----FQI 631 (713)
Q Consensus 568 ----~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~----p~~~~~--~~~lg~~y~~~g--~~~eA~~~l~ka----l~~ 631 (713)
..++..+|.+..-.|++++|..+.+.+.+.. -....+ ....+.++..+| .+.+.+..|... +..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3456778889999999999999999988873 222233 344577888888 333334333332 222
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCChh---HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 005133 632 SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA----DKKNPL---PMYQKANILLSLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~----~p~~~~---~~~~la~~~~~~g~~~eA~~~~~kal~l~P 701 (713)
.|-........+.++...-+++.+.......++. .|.... +++.++.+++..|+.++|...+..+..+.-
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3444444444444443333366655555555544 232221 234799999999999999999998877543
No 258
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.17 E-value=0.00095 Score=45.00 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 005133 671 LPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666653
No 259
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.12 E-value=0.00059 Score=46.13 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCc
Q 005133 101 AAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPL 133 (713)
Q Consensus 101 a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~ 133 (713)
|.+++.+|++|..+|+.++|+.+|++|++++|.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 357999999999999999999999999999983
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.12 E-value=0.00093 Score=45.20 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 671 LPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
.+|+.+|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35566666666666666666666666666664
No 261
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.046 Score=52.35 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005133 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (713)
Q Consensus 605 ~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~ 681 (713)
-..++..+...+++++|+..++.++....+. ..+-..+|.+...+|.+++|+..++...... -.+......|+++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHH
Confidence 3456666777777777777777766543222 1244567777777777777777665432210 01223455677777
Q ss_pred HcCCHHHHHHHHHHHHHHCCC
Q 005133 682 SLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 682 ~~g~~~eA~~~~~kal~l~P~ 702 (713)
..|+.++|+..|+++++..++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 777777777777777776643
No 262
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.06 E-value=0.024 Score=61.12 Aligned_cols=169 Identities=14% Similarity=0.103 Sum_probs=81.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---H
Q 005133 526 LITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---Y 602 (713)
Q Consensus 526 al~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~ 602 (713)
.+...|-+.+++..++.++..+|+++.|.+++++|+-.........+..-..-...|. +.--| ..+.+ .
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~rL~~-----~~~eNR~ff 103 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---CRLDY-----RRPENRQFF 103 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---cccCC-----ccccchHHH
Confidence 3466788888888888888888888888888777763311000000000000000000 00000 00111 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CChhHHHH
Q 005133 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH-SSV-IMSYLGTAMHALKRSGEAIEMMEKAILADK-----KNPLPMYQ 675 (713)
Q Consensus 603 ~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~-~~~-~~~~la~~~~~~g~~eeAl~~l~kal~~~p-----~~~~~~~~ 675 (713)
.+.+.....+.+.|-+..|.++.+-.+.++|. |+. +++.+-....+.++|+--++.++....... .-|...+.
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS 183 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence 23334444555555666666666555565555 443 223333333444555544444444333111 12344455
Q ss_pred HHHHHHHcCCH---------------HHHHHHHHHHHHHCCC
Q 005133 676 KANILLSLEKF---------------DEALEVLEELKEYAPR 702 (713)
Q Consensus 676 la~~~~~~g~~---------------~eA~~~~~kal~l~P~ 702 (713)
.+.+++..++. ++|...+.+|+...|.
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 55666666655 6666666666666653
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.04 E-value=0.38 Score=50.12 Aligned_cols=220 Identities=13% Similarity=0.011 Sum_probs=136.4
Q ss_pred HHHhhcHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC---CC------
Q 005133 476 YFEVVDYLEAERAFTLARRAS-PYSL-------EGMDIYSTVLYHLK-EDMKLSYLAQELITT----DR---LA------ 533 (713)
Q Consensus 476 ~~~~g~~~eA~~~~~kal~~~-p~~~-------~a~~~la~~l~~~g-~~~~A~~~~~kal~~----~p---~~------ 533 (713)
....|+++.|..++.++-... ...+ ..++..|..+...+ +++.|..+++++.+. .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999998765 3333 34556666667777 899999999998877 22 11
Q ss_pred -HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHH
Q 005133 534 -PQSWCAMGNCYSLQKDHE---TALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR---HYNSWY 606 (713)
Q Consensus 534 -~~~~~~la~~~~~~g~~~---~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~---~~~~~~ 606 (713)
..++..++.+|...+.++ +|..+++.+....|+.+..+...-.++...++.+++.+.+.+++...+- +.....
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 145677888888877665 4555666666667887777766666666689999999999999886442 122222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH---HHHc--CChHHH--HHHHHHHHH----h--CCCCh-
Q 005133 607 GLGMVYLRQEKFEFSEHHFRMAFQI--SPHSSVIMSYLGTA---MHAL--KRSGEA--IEMMEKAIL----A--DKKNP- 670 (713)
Q Consensus 607 ~lg~~y~~~g~~~eA~~~l~kal~~--~p~~~~~~~~la~~---~~~~--g~~eeA--l~~l~kal~----~--~p~~~- 670 (713)
.....+.. .....|...+...+.. .|.... +.....+ +... ++.... ++.++..+. . .|-..
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 22222222 3456777777776643 222221 2222222 1111 122222 333322222 1 12222
Q ss_pred ------hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 671 ------LPMYQKANILLSLEKFDEALEVLEELK 697 (713)
Q Consensus 671 ------~~~~~la~~~~~~g~~~eA~~~~~kal 697 (713)
..++..|...++.++|++|..+|+-++
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 235778899999999999999999776
No 264
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0033 Score=64.43 Aligned_cols=101 Identities=16% Similarity=0.215 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDARH----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLG 643 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~----~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 643 (713)
+.-+..-|.-|+...+|..|+..|.++++..-.+ ...|.+.+-+....|+|..|+.-..+++.++|.+..+++.-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 4556678889999999999999999999875443 456888899999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC
Q 005133 644 TAMHALKRSGEAIEMMEKAILADKK 668 (713)
Q Consensus 644 ~~~~~~g~~eeAl~~l~kal~~~p~ 668 (713)
.|++.+.++.+|..+++..++++.+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999988777654
No 265
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.02 E-value=0.37 Score=56.23 Aligned_cols=263 Identities=13% Similarity=-0.043 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHH-ccCCHHHHHHHHHcCcccC--CCC----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC---C-
Q 005133 431 GLLRILGEGYRMS-CMYRCKDALDVYLKLPHKH--YNT----GWVLSQVGKAYFEVVDYLEAERAFTLARRASPY---S- 499 (713)
Q Consensus 431 ~ll~~l~~a~~l~-~~g~~~eAi~~l~~~~~~~--~~~----~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~---~- 499 (713)
+....+.-|..++ ...++++|..++++++... ++. ..+.+.++.++.+.+... |+..+++.++.... .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3445555565555 5788999999999874332 222 334567788888888777 99999999987554 1
Q ss_pred HHHHHHHH--HHHHHccCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCC------
Q 005133 500 LEGMDIYS--TVLYHLKEDMKLSYLAQELITTD--RLAPQSW----CAMGNCYSLQKDHETALKNFQRAVQLNP------ 565 (713)
Q Consensus 500 ~~a~~~la--~~l~~~g~~~~A~~~~~kal~~~--p~~~~~~----~~la~~~~~~g~~~~Al~~~~kal~~~p------ 565 (713)
....+.+. ..+...+++..|...++...... ..++.+. ...+.++...+..+++++.++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 22222332 22223378999999999988876 3555332 2346667777888888888888754321
Q ss_pred ----CCHHHHHHHHH--HHHHccCHHHHHHHHHHHH---Hh---CC-------C---------------C----------
Q 005133 566 ----RFAYGHTLCGH--EYVALEDFENGIRSYQSAL---RV---DA-------R---------------H---------- 601 (713)
Q Consensus 566 ----~~~~a~~~lg~--~~~~~g~~eeAl~~~~~al---~~---~p-------~---------------~---------- 601 (713)
....+|..+-. ++...|+++.+...+++.- .. .+ + .
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 12334444333 4566777766666655432 21 11 0 0
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHcCC
Q 005133 602 ----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS--------------------------SVIMSYLGTAMHALKR 651 (713)
Q Consensus 602 ----~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~--------------------------~~~~~~la~~~~~~g~ 651 (713)
.-+|..-|.++...+..++|.++++++++.-.+. ..+...++++.+-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 0123334556667777778888888887641110 1134567888889999
Q ss_pred hHHHHHHHHHHHHhC---CC------ChhHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 652 SGEAIEMMEKAILAD---KK------NPLPMYQKANILLSLEKFDEALEVLE 694 (713)
Q Consensus 652 ~eeAl~~l~kal~~~---p~------~~~~~~~la~~~~~~g~~~eA~~~~~ 694 (713)
+..|...++.+.... |. .+..++..|..+...|+.+.|..+|.
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 999999998877653 22 36778999999999999999999998
No 266
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.063 Score=62.40 Aligned_cols=193 Identities=12% Similarity=0.090 Sum_probs=118.2
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 005133 472 VGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHE 551 (713)
Q Consensus 472 lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~ 551 (713)
+|.+....+-|++|...|++-- -+..+. -.+....+..++|.++.++. +.+.+|..+|....+.|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~----~n~~A~---~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD----MNVSAI---QVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc----ccHHHH---HHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 4555556666666666666531 111111 12233455566666665554 34788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005133 552 TALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 552 ~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~ 631 (713)
+|++.|-++ +++..|.....+..+.|.|++-++++.-+-+...+ +.+-..|..+|.+.++..+-.+.+ .
T Consensus 1122 dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi-----~ 1190 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFI-----A 1190 (1666)
T ss_pred HHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHh-----c
Confidence 999888775 56777888888888889999888888777654322 333344555566666665544433 2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 632 SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
.|+.+. ....|.-++..|.|+.|.-+|. +..-|..|+..+..+|+|+.|...-+++
T Consensus 1191 gpN~A~-i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1191 GPNVAN-IQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred CCCchh-HHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344333 2345666666666666665554 2334555666666666666666655554
No 267
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.99 E-value=0.018 Score=53.63 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005133 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 604 ~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal 663 (713)
+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555543
No 268
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.98 E-value=0.21 Score=55.65 Aligned_cols=204 Identities=9% Similarity=-0.094 Sum_probs=143.3
Q ss_pred CCHHHHHHHHHcCcccC--------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 005133 446 YRCKDALDVYLKLPHKH--------YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDM 517 (713)
Q Consensus 446 g~~~eAi~~l~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~ 517 (713)
....+.+..++..+... +..-..|......-...|+++...-.|++++--.....+.|..++.-....|+..
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~ 348 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVS 348 (577)
T ss_pred HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchh
Confidence 34566667777665432 1233455556666667789999999999988888888888888888888888888
Q ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH---HHHH
Q 005133 518 KLSYLAQELITT-DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIR---SYQS 593 (713)
Q Consensus 518 ~A~~~~~kal~~-~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~---~~~~ 593 (713)
-+...+..+.+. .|..+.+...-+.+-...|+++.|...+++.....|....+-...+....+.|..+.+.. ++..
T Consensus 349 ~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~ 428 (577)
T KOG1258|consen 349 LANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSS 428 (577)
T ss_pred HHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHH
Confidence 887777777665 466677777778888888888888888888888778887777777777778888887774 2222
Q ss_pred HHHhCCCC----HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 594 ALRVDARH----YNSWYGLGMV-YLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (713)
Q Consensus 594 al~~~p~~----~~~~~~lg~~-y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 650 (713)
... ...+ ...+...+.. +.-.++.+.|...+.+++...|.+...+..+..+....+
T Consensus 429 ~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 429 IYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 211 1111 2223333433 333568888888888888888888887777766666554
No 269
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=96.98 E-value=0.002 Score=59.61 Aligned_cols=86 Identities=22% Similarity=0.252 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhhccchhhHHHHHhhhhcCC-------------------------------CchhHHHHHHHHhhcCCH
Q 005133 3 GILTDCVQNSLRYFMYRNAIFLCERLCAEFP-------------------------------SEVNLQLLATCYLQNNQA 51 (713)
Q Consensus 3 ~~l~~~i~~~l~~~~~~~A~flaerl~a~~~-------------------------------~~~~~~llA~~~~~~~~~ 51 (713)
..||.+|.++-+.++|..|-.+||.|+.+.+ .+.+.|+||..||-.++|
T Consensus 11 ~~L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~yllAksyFD~kEy 90 (142)
T PF04049_consen 11 SELRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSSSPSSSQLSPSSPSEDQLESKEYDKYLLAKSYFDCKEY 90 (142)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCcccccccccccCCCccccCCCChhhhhhhhhHHHHHHHHHHHhchhHH
Confidence 4689999999999999999999999998881 123789999999999999
Q ss_pred HHHHHHHhcCCCcchhHHHHHHHh---hcCChhHHHHhhC
Q 005133 52 YAAYNILKGTQMALSRYLFAVACY---QMDLLSEAEAALS 88 (713)
Q Consensus 52 ~~A~~~l~~~~~~~~~~l~A~~~~---~l~~~~ea~~~L~ 88 (713)
+||..+|+++.++.++||.--+.+ +-++.++-+.++.
T Consensus 91 ~RaA~~L~~~~s~~~~FL~lYs~YLa~EKr~~Ee~~~~~~ 130 (142)
T PF04049_consen 91 DRAAHVLKDCKSPKALFLRLYSRYLAGEKRKEEEMEESLG 130 (142)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHHHHHhhhhHhhcC
Confidence 999999999988888877665555 3344666666664
No 270
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.97 E-value=0.034 Score=62.21 Aligned_cols=141 Identities=15% Similarity=0.055 Sum_probs=78.4
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005133 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHF 625 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l 625 (713)
..++|.+|+..++..-... .....|-.++.-|...|+|+.|.++|.++- ....-..+|-+.|+|++|.++-
T Consensus 744 ~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHH
Confidence 3445555555554432221 112234456777788888888888887652 2233445677778888887776
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHHcCChH-------------HHHHHHHHH------HHh----CCCC-hhHHHHHHHHH
Q 005133 626 RMAFQISPHSS-VIMSYLGTAMHALKRSG-------------EAIEMMEKA------ILA----DKKN-PLPMYQKANIL 680 (713)
Q Consensus 626 ~kal~~~p~~~-~~~~~la~~~~~~g~~e-------------eAl~~l~ka------l~~----~p~~-~~~~~~la~~~ 680 (713)
++... |... ..|...+.-+.+.|+|. .|+.+|++. +.+ .|+. ...+..+|.-|
T Consensus 815 ~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~ 892 (1636)
T KOG3616|consen 815 EECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKEL 892 (1636)
T ss_pred HHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHH
Confidence 66532 3322 23333444444444444 444444432 111 2221 34567788888
Q ss_pred HHcCCHHHHHHHHHHHH
Q 005133 681 LSLEKFDEALEVLEELK 697 (713)
Q Consensus 681 ~~~g~~~eA~~~~~kal 697 (713)
...|+..+|...|-++-
T Consensus 893 e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 893 EAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HhccChhHHHHHHHhhh
Confidence 88888888888776654
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.07 Score=51.15 Aligned_cols=92 Identities=7% Similarity=0.004 Sum_probs=37.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 540 MGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE 616 (713)
Q Consensus 540 la~~~~~~g~~~~Al~~~~kal~~~p~~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g 616 (713)
++..+...+++++|+..++.++....+. .-+-..++.+...+|.+++|+..+....... -........|.++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcC
Confidence 3444444555555555555444322111 1223344444444444444444444321110 01112233444444444
Q ss_pred CHHHHHHHHHHHHHhC
Q 005133 617 KFEFSEHHFRMAFQIS 632 (713)
Q Consensus 617 ~~~eA~~~l~kal~~~ 632 (713)
+-++|+..|++++...
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 4444444444444443
No 272
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.92 E-value=0.1 Score=55.78 Aligned_cols=240 Identities=10% Similarity=0.065 Sum_probs=125.4
Q ss_pred HHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 005133 454 VYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA 533 (713)
Q Consensus 454 ~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~ 533 (713)
++++++...+-.+.+|+--.......++-+.|+...+++++..|. ....++.++....+.+....+|+++.+.-.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~-- 364 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK-- 364 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH--
Confidence 455666666777777777777777777777777777777766665 445556666555555555555555543100
Q ss_pred HHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 534 PQSWCAMGNCYS---LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (713)
Q Consensus 534 ~~~~~~la~~~~---~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~ 610 (713)
--+..+..-. ..|+++...+++-+-. .....+|..+-..-.+..-.+.|..+|-++-+..--...+|..-|.
T Consensus 365 --r~ys~~~s~~~s~~D~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~ 439 (660)
T COG5107 365 --RKYSMGESESASKVDNNFEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAF 439 (660)
T ss_pred --HHHhhhhhhhhccccCCccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHH
Confidence 0000000000 0111211111111100 0122233333333344444566666666655433122222222222
Q ss_pred -HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHcCCHH
Q 005133 611 -VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN--PLPMYQKANILLSLEKFD 687 (713)
Q Consensus 611 -~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~--~~~~~~la~~~~~~g~~~ 687 (713)
-|...|++.-|-..|+-.+...|+++......-..+...++-+.|...|++++..-.+. ..+|..+...-..-|+..
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchH
Confidence 23445677777777777777777666655555566666677777777777666543222 344555555555666666
Q ss_pred HHHHHHHHHHHHCCCC
Q 005133 688 EALEVLEELKEYAPRE 703 (713)
Q Consensus 688 eA~~~~~kal~l~P~~ 703 (713)
.+...=++..++.|..
T Consensus 520 ~v~sLe~rf~e~~pQe 535 (660)
T COG5107 520 NVYSLEERFRELVPQE 535 (660)
T ss_pred HHHhHHHHHHHHcCcH
Confidence 6666666666666654
No 273
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.9 Score=49.35 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=120.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C--HH
Q 005133 537 WCAMGNCYSLQKDHETALKNFQRAVQL---NPR-------FAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR-H--YN 603 (713)
Q Consensus 537 ~~~la~~~~~~g~~~~Al~~~~kal~~---~p~-------~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~-~--~~ 603 (713)
+-.+..+-.-.|++.+|++....+.+. .|. .+..+..+|......+.++.|...|..+.+.-.. + .-
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344566677789999999888777665 333 2456777888888889999999999999886433 2 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----
Q 005133 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS----------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKK----- 668 (713)
Q Consensus 604 ~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~----------~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~----- 668 (713)
+..++|.+|.+.|+-+.-.+.++. +.|.+ ..+++..|...+..+++.||...+.+.++....
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~r 482 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNR 482 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHH
Confidence 456789999998876554444443 34442 346777888999999999999999999987521
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 005133 669 -NPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 669 -~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P 701 (713)
....+..++.+..-.|+..++.....-++++..
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 123456789999999999999998887777643
No 274
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.89 E-value=0.00084 Score=69.04 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=96.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005133 540 MGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFE 619 (713)
Q Consensus 540 la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~ 619 (713)
.+.-....|.+++|++.|..+++++|.....|...+.+++.+++...|+.-|..++.++|+...-|-..|.....+|+|+
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005133 620 FSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 620 eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal 663 (713)
+|...+..+.+++-+. .+-..+-.+.-..+..++-...+++..
T Consensus 200 ~aa~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHH
Confidence 9999999998875432 222233344444444444444444433
No 275
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.037 Score=56.94 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF----AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~----~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~ 610 (713)
.-+-.-|+-|+..++|..|+..|.++++..-.+ +..|.+.+.+....|+|..|+.-+.+++.++|.+..+++.=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 445667899999999999999999999874333 4568889999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 005133 611 VYLRQEKFEFSEHHFRMAFQISPH 634 (713)
Q Consensus 611 ~y~~~g~~~eA~~~l~kal~~~p~ 634 (713)
|++.+.++.+|..+++..+.++..
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999998776543
No 276
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.84 E-value=1.5 Score=51.09 Aligned_cols=231 Identities=13% Similarity=0.032 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH--------------------------HHHHHHHHHHHHccCHHHHHH
Q 005133 468 VLSQVGKAYFEVVDYLEAERAFTLARRASPYSL--------------------------EGMDIYSTVLYHLKEDMKLSY 521 (713)
Q Consensus 468 ~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~--------------------------~a~~~la~~l~~~g~~~~A~~ 521 (713)
+|+.-|......+..++|.++++++++.-.... ...+..+.+..-.+++..+..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 455666777777877788888888876421110 122344455566788888888
Q ss_pred HHHHHHHhC---C------CCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHhCCCCH---HHHHHHHHHHHHc
Q 005133 522 LAQELITTD---R------LAPQSWCAMGNCYSLQKDHETALKNFQ--------RAVQLNPRFA---YGHTLCGHEYVAL 581 (713)
Q Consensus 522 ~~~kal~~~---p------~~~~~~~~la~~~~~~g~~~~Al~~~~--------kal~~~p~~~---~a~~~lg~~~~~~ 581 (713)
....+.... | ..+..++..|..+...|+.+.|+.+|. .+....+... .+..++..++...
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~ 462 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYE 462 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhh
Confidence 777666542 2 246788899999999999999999998 3333333322 2334455566555
Q ss_pred cCHHH----HHHHHHHHHHhCCCCHHHHHHHHHH-----HH--HcCCHHHHHHHHHHHHHhC-CC--C----HHHHHHHH
Q 005133 582 EDFEN----GIRSYQSALRVDARHYNSWYGLGMV-----YL--RQEKFEFSEHHFRMAFQIS-PH--S----SVIMSYLG 643 (713)
Q Consensus 582 g~~ee----Al~~~~~al~~~p~~~~~~~~lg~~-----y~--~~g~~~eA~~~l~kal~~~-p~--~----~~~~~~la 643 (713)
+.-.. +...++..-....+.+..++..+.+ +. ..-...++...+.++++.. .. + ..++..++
T Consensus 463 ~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~ 542 (608)
T PF10345_consen 463 SSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMG 542 (608)
T ss_pred cccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 54333 3333333222111122222222222 21 1223457788887777665 11 1 22455677
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC---hhHHH------HHHHHHHHcCCHHHHHHHHHHHHHH
Q 005133 644 TAMHALKRSGEAIEMMEKAILADKKN---PLPMY------QKANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 644 ~~~~~~g~~eeAl~~l~kal~~~p~~---~~~~~------~la~~~~~~g~~~eA~~~~~kal~l 699 (713)
..++ .|+..+.......+....... ....+ .++..+...|+.++|.....+.-..
T Consensus 543 ~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 543 HRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred HHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 7777 788888777777777654333 33332 4566688899999999888776543
No 277
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.77 E-value=0.1 Score=55.58 Aligned_cols=116 Identities=11% Similarity=0.018 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 005133 551 ETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR---QEKFEFSEHHFRM 627 (713)
Q Consensus 551 ~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~---~g~~~eA~~~l~k 627 (713)
+.-+.+|++|++.+|++...+..+-.+.....+.++..+.+++++..+|.++..|..+-..... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3445566666666666666666655555566666666666666666666666655544333222 1235555555555
Q ss_pred HHHhCC------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005133 628 AFQISP------------------HSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (713)
Q Consensus 628 al~~~p------------------~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~ 666 (713)
++..-. .-..++..+...+...|..+.|+..++-.++++
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 553210 002245566777777888888888888888764
No 278
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.74 E-value=0.09 Score=56.17 Aligned_cols=224 Identities=10% Similarity=-0.064 Sum_probs=148.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Q 005133 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH--- 512 (713)
Q Consensus 436 l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~--- 512 (713)
+.-...+...++-+.|+..........|. ..+.++.+|....+-++...+|+++.+.-. --+..+..-..
T Consensus 306 ~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~----r~ys~~~s~~~s~~ 378 (660)
T COG5107 306 FDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK----RKYSMGESESASKV 378 (660)
T ss_pred HHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH----HHHhhhhhhhhccc
Confidence 33344456778888999988888777665 556778877777777777777877764210 00000000000
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHccCHHHHHHHH
Q 005133 513 LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHE-YVALEDFENGIRSY 591 (713)
Q Consensus 513 ~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~-~~~~g~~eeAl~~~ 591 (713)
-|+.+...+++ +..-.....+|+.+-+.-.+..-.+.|..+|.++-+..-....+|..-|.+ |...|++.-|-.+|
T Consensus 379 D~N~e~~~Ell---~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~if 455 (660)
T COG5107 379 DNNFEYSKELL---LKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIF 455 (660)
T ss_pred cCCccccHHHH---HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHH
Confidence 11121111111 111113345677666766777778889999998877653444444444433 66789999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005133 592 QSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS--SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669 (713)
Q Consensus 592 ~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~ 669 (713)
+-.+...|+++......-..++..++-+.|..+|++++..-... ..+|..+-..-..-|+...+...=++..+..|+.
T Consensus 456 elGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 456 ELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 99999999988887777788889999999999999887654333 4566666666667788888877777777777754
No 279
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.74 E-value=0.0014 Score=67.50 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=94.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 005133 507 STVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFEN 586 (713)
Q Consensus 507 a~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~ee 586 (713)
+.-.+..|.++.|+..+..+++++|.....+...+.++..++++..|++-+..+++++|+...-|-..|.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 44455677899999999999999999999999999999999999999999999999999999889899999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 587 GIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAF 629 (713)
Q Consensus 587 Al~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal 629 (713)
|...++.+.+++-+ ..+--.+-.+.-..+..++-...++++.
T Consensus 201 aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 201 AAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 99999999887644 2222223333333344444444444443
No 280
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.73 E-value=0.12 Score=55.18 Aligned_cols=144 Identities=13% Similarity=0.015 Sum_probs=104.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005133 557 FQRAVQLNPRFAYGHTLCGHEYVAL------------EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHH 624 (713)
Q Consensus 557 ~~kal~~~p~~~~a~~~lg~~~~~~------------g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~ 624 (713)
|.+.++.+|.+..+|..+....... .-.+.-+.+|++|++.+|++...+..+-.+..+..+-++..+.
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444555555555444332222 2246778899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH-c--CChHHHHHHHHHHHHhCC----C--------------ChhHHHHHHHHHHHc
Q 005133 625 FRMAFQISPHSSVIMSYLGTAMHA-L--KRSGEAIEMMEKAILADK----K--------------NPLPMYQKANILLSL 683 (713)
Q Consensus 625 l~kal~~~p~~~~~~~~la~~~~~-~--g~~eeAl~~l~kal~~~p----~--------------~~~~~~~la~~~~~~ 683 (713)
+++++..+|++..+|...-..... . -.++..+..|.+++..-. . -..++..+.....+.
T Consensus 88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~a 167 (321)
T PF08424_consen 88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQA 167 (321)
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence 999999999998887654333322 2 246778888888775311 0 123456677778899
Q ss_pred CCHHHHHHHHHHHHHHC
Q 005133 684 EKFDEALEVLEELKEYA 700 (713)
Q Consensus 684 g~~~eA~~~~~kal~l~ 700 (713)
|..+.|+..++-.++++
T Consensus 168 G~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 168 GYTERAVALWQALLEFN 184 (321)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 99999999999999975
No 281
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.43 E-value=0.57 Score=59.80 Aligned_cols=273 Identities=9% Similarity=0.021 Sum_probs=163.2
Q ss_pred HHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHccCH
Q 005133 438 EGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYS-TVLYHLKED 516 (713)
Q Consensus 438 ~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la-~~l~~~g~~ 516 (713)
+-..+...|+|..|..+|+.+++.+|.....+...-...+..|.+...+-..+-.....++...-+..++ .+.|..+++
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence 3344456788888999999888888887666666667777788888888877777666665555554443 344777776
Q ss_pred HHHHHHHH--------------HHHHhCCCCHHHH-HHHHHHHH----------hcCCHHHHHHHHHHHHHh--------
Q 005133 517 MKLSYLAQ--------------ELITTDRLAPQSW-CAMGNCYS----------LQKDHETALKNFQRAVQL-------- 563 (713)
Q Consensus 517 ~~A~~~~~--------------kal~~~p~~~~~~-~~la~~~~----------~~g~~~~Al~~~~kal~~-------- 563 (713)
+....+.. ..+.....+..+. -.+..... ..|-|..+.++.-+..-+
T Consensus 1535 D~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1535 DLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred hhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544321 1111122221111 11111111 111222222222221110
Q ss_pred -----CCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hC----CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 564 -----NPR-----FAYGHTLCGHEYVALEDFENGIRSYQSALR---VD----ARHYNSWYGLGMVYLRQEKFEFSEHHFR 626 (713)
Q Consensus 564 -----~p~-----~~~a~~~lg~~~~~~g~~eeAl~~~~~al~---~~----p~~~~~~~~lg~~y~~~g~~~eA~~~l~ 626 (713)
.++ +..-|......-....+..+-+-.+++++- .+ ..-.+.|...|++....|+++.|...+-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 111 112232222221122224444445555432 12 2346789999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC----------C------hhHHHHHHHHHHHcCCH--H
Q 005133 627 MAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD-KK----------N------PLPMYQKANILLSLEKF--D 687 (713)
Q Consensus 627 kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~-p~----------~------~~~~~~la~~~~~~g~~--~ 687 (713)
+|.+.. -+.++...|..+...|+...|+..+++.++.+ |+ . ..+...++.-....|++ +
T Consensus 1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~ 1772 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESK 1772 (2382)
T ss_pred hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHH
Confidence 998876 56788999999999999999999999999663 22 1 11233344444455553 3
Q ss_pred HHHHHHHHHHHHCCCChhHHHhccC
Q 005133 688 EALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 688 eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
+-+.+|..+.+..|....-++.||.
T Consensus 1773 ~ilk~Y~~~~ail~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1773 DILKYYHDAKAILPEWEDKHYHLGK 1797 (2382)
T ss_pred HHHHHHHHHHHHcccccCceeeHHH
Confidence 4577899999999988888887773
No 282
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.42 E-value=0.079 Score=57.19 Aligned_cols=33 Identities=21% Similarity=0.045 Sum_probs=16.9
Q ss_pred cCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005133 461 KHYNTGWVLSQVGKAYFEVVDYLEAERAFTLAR 493 (713)
Q Consensus 461 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal 493 (713)
.+|....++..++.++..+|++..|.+++++++
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555555555555555555555555544
No 283
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.085 Score=57.88 Aligned_cols=243 Identities=13% Similarity=0.039 Sum_probs=132.7
Q ss_pred HHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 449 KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS--LEGMDIYSTVLYHLKEDMKLSYLAQEL 526 (713)
Q Consensus 449 ~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~--~~a~~~la~~l~~~g~~~~A~~~~~ka 526 (713)
+...+.+.......|..+...+..+..+...|+.+.|+..++..+...-.. .-.++.++.++..+.++.+|...+..+
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 444444445556677777777777888888888888888888887711111 223456677777777888888888888
Q ss_pred HHhCCCCHHHHHHHH-HHHHh--------cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 527 ITTDRLAPQSWCAMG-NCYSL--------QKDHETALKNFQRAVQL---NPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (713)
Q Consensus 527 l~~~p~~~~~~~~la-~~~~~--------~g~~~~Al~~~~kal~~---~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a 594 (713)
.+........|..++ .||.. .|+-++|-.+++....+ .|.+..+-. .-..+|.+.-.+.
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKverf~~~~ 400 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVERFVKRG 400 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHHHhccc
Confidence 877766555555554 44432 22334443333333221 121111000 0001111111111
Q ss_pred HHhCCCCHH--HHHHHHHHHHHc--CCHHHHHHHHHHHH---Hh-CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 595 LRVDARHYN--SWYGLGMVYLRQ--EKFEFSEHHFRMAF---QI-SPHSS-VIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 595 l~~~p~~~~--~~~~lg~~y~~~--g~~~eA~~~l~kal---~~-~p~~~-~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
- .++.... .++.++.++-.. ...++.. -++..+ +. ++++. --+..+|.++..+|+...|..+|...++.
T Consensus 401 ~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~ 478 (546)
T KOG3783|consen 401 P-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK 478 (546)
T ss_pred c-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 1111111 123333333221 1222222 111111 11 22221 24456788899999988998888887743
Q ss_pred C---CC----ChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCC
Q 005133 666 D---KK----NPLPMYQKANILLSLEK-FDEALEVLEELKEYAPR 702 (713)
Q Consensus 666 ~---p~----~~~~~~~la~~~~~~g~-~~eA~~~~~kal~l~P~ 702 (713)
. .. .|.+++.+|..|..+|. ..+|.+++.+|.+...+
T Consensus 479 e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 479 ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 1 11 36778899999998888 89999999998887654
No 284
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.37 E-value=0.0063 Score=40.95 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 671 LPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666677777777777776666663
No 285
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.14 E-value=0.22 Score=49.87 Aligned_cols=190 Identities=17% Similarity=0.105 Sum_probs=119.6
Q ss_pred HccCCHHHHHHHHHcCcccCCCCH----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC-----CCHH-HHHHHHHHHHH
Q 005133 443 SCMYRCKDALDVYLKLPHKHYNTG----WVLSQVGKAYFEVVDYLEAERAFTLARRASP-----YSLE-GMDIYSTVLYH 512 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~~~~~----~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p-----~~~~-a~~~la~~l~~ 512 (713)
+.....++|+.-|+++++..+..+ .++-.+..+++.+++|++-++.|.+.+..-. +..+ ....+......
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 345689999999999988766543 3667788899999999999999999886421 1111 12222222223
Q ss_pred ccCHHHHHHHHHHHHHh--CCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHhCC------------CCHHHHHHH
Q 005133 513 LKEDMKLSYLAQELITT--DRLAPQSWC----AMGNCYSLQKDHETALKNFQRAVQLNP------------RFAYGHTLC 574 (713)
Q Consensus 513 ~g~~~~A~~~~~kal~~--~p~~~~~~~----~la~~~~~~g~~~~Al~~~~kal~~~p------------~~~~a~~~l 574 (713)
..+.+-...+|+..++. +..+...|+ .+|.+|+..++|.+-.+.+++.-.... ....+|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 33444455556555442 233444554 578888888888877777766554311 112445555
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005133 575 GHEYVALEDFENGIRSYQSALRVDARH--YNSWY----GLGMVYLRQEKFEFSEHHFRMAFQIS 632 (713)
Q Consensus 575 g~~~~~~g~~eeAl~~~~~al~~~p~~--~~~~~----~lg~~y~~~g~~~eA~~~l~kal~~~ 632 (713)
...|..+.+-.+-..+|++++.+...- +...- .=|..+.+.|+|++|-.-|=+|++..
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 666777777777777888887764332 22211 22455677788888888777777654
No 286
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.02 E-value=0.29 Score=49.07 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=48.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--H
Q 005133 505 IYSTVLYHLKEDMKLSYLAQELITTDRL------------APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAY--G 570 (713)
Q Consensus 505 ~la~~l~~~g~~~~A~~~~~kal~~~p~------------~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~--a 570 (713)
.++.+++..+++.+...++.++-..... -.++|..-..+|..+++-.+-..+|++++.+...-+. .
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 4566666666666666655555433211 1134444455566666666666666666655322211 1
Q ss_pred H----HHHHHHHHHccCHHHHHHHHHHHHHh
Q 005133 571 H----TLCGHEYVALEDFENGIRSYQSALRV 597 (713)
Q Consensus 571 ~----~~lg~~~~~~g~~eeAl~~~~~al~~ 597 (713)
. -.=|..+.+.|++++|-.-|-+|++.
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 1 11233455666666666666666654
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.98 E-value=0.92 Score=51.19 Aligned_cols=165 Identities=8% Similarity=-0.018 Sum_probs=83.3
Q ss_pred CHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHccCH
Q 005133 447 RCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGM----------DIYSTVLYHLKED 516 (713)
Q Consensus 447 ~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~----------~~la~~l~~~g~~ 516 (713)
..++|+++.+.- | .+..|..+|......-+++.|...|-+.-.... .... ...+.+-.-.|++
T Consensus 678 gledA~qfiEdn----P-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~G--ik~vkrl~~i~s~~~q~aei~~~~g~f 750 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN----P-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAG--IKLVKRLRTIHSKEQQRAEISAFYGEF 750 (1189)
T ss_pred chHHHHHHHhcC----C-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccc--hhHHHHhhhhhhHHHHhHhHhhhhcch
Confidence 467788776642 2 567889999988888888888887766532211 0011 1223333444666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN--PRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (713)
Q Consensus 517 ~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~--p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a 594 (713)
++|..+|-.+-+.+ ....++...|+|-...+.++..-.-+ .....++..+|..+.....+++|.++|...
T Consensus 751 eeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 751 EEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666554332211 11123334444444444333221111 111345555666666666666666555543
Q ss_pred ----------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 595 ----------------------LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFR 626 (713)
Q Consensus 595 ----------------------l~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~ 626 (713)
...-|++...+-.+|.++...|.-++|.+.|.
T Consensus 823 ~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 823 GDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred cchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 12234444445555555555555555555443
No 288
>PRK10941 hypothetical protein; Provisional
Probab=95.96 E-value=0.042 Score=56.50 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005133 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (713)
Q Consensus 605 ~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~ 674 (713)
..++-.+|...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|+.-++..++..|+++.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3444455555555555555555555555555555555555555555555555555555555555554433
No 289
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.84 E-value=0.019 Score=38.08 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 005133 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYS 499 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~ 499 (713)
++++.+|.++...|++++|++.|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367889999999999999999999999988863
No 290
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.34 Score=53.38 Aligned_cols=224 Identities=13% Similarity=0.049 Sum_probs=129.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCC--CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHH-HH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHY--NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYST-VL 510 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~--~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~-~l 510 (713)
..+..+..+...|+.+.|+..++..++..- -....++.+|.++..+.+|..|...+...........-.|..++. |+
T Consensus 269 wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~ 348 (546)
T KOG3783|consen 269 WLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCL 348 (546)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 456667777777888888888888776111 134467889999999999999999999999887776666655553 33
Q ss_pred HH--------ccCHHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHH
Q 005133 511 YH--------LKEDMKLSYLAQ---ELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAY--GHTLCGHE 577 (713)
Q Consensus 511 ~~--------~g~~~~A~~~~~---kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~--a~~~lg~~ 577 (713)
.. .|+.+++..+.+ ..+...|.+..+- ..-..+|.++-.+.- +++.... .++.++.+
T Consensus 349 l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E---------~f~~RKverf~~~~~-~~~~~~la~P~~El~Y~ 418 (546)
T KOG3783|consen 349 LQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLE---------KFIVRKVERFVKRGP-LNASILLASPYYELAYF 418 (546)
T ss_pred hccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchh---------HHHHHHHHHHhcccc-ccccccccchHHHHHHH
Confidence 22 123333333322 2222322221100 000112222211111 1111111 12333333
Q ss_pred HHHc--cCHHHHHHHHHHHHH---h-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHHHHHH
Q 005133 578 YVAL--EDFENGIRSYQSALR---V-DARHYN-SWYGLGMVYLRQEKFEFSEHHFRMAFQIS---PH----SSVIMSYLG 643 (713)
Q Consensus 578 ~~~~--g~~eeAl~~~~~al~---~-~p~~~~-~~~~lg~~y~~~g~~~eA~~~l~kal~~~---p~----~~~~~~~la 643 (713)
+-.. ....+.. -++..++ . ++++.- -+..+|.++...|+-..|..+|..+++.. .. -|.+++.+|
T Consensus 419 Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA 497 (546)
T KOG3783|consen 419 WNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELA 497 (546)
T ss_pred HhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence 3221 1222222 1222221 2 333322 35667999999999999999999887431 12 256899999
Q ss_pred HHHHHcCC-hHHHHHHHHHHHHhCCC
Q 005133 644 TAMHALKR-SGEAIEMMEKAILADKK 668 (713)
Q Consensus 644 ~~~~~~g~-~eeAl~~l~kal~~~p~ 668 (713)
.+|..++. ..+|..++.+|-....+
T Consensus 498 ~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 498 LLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHhcccChHHHHHHHHHHHhhccc
Confidence 99999998 99999999999876643
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.78 E-value=0.13 Score=47.97 Aligned_cols=85 Identities=11% Similarity=-0.030 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA 648 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 648 (713)
..+..+..+-...++.+++...+...--+.|..+..-..-|.+++..|+|.+|+..|+.+....|..+.+--.++.|++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 44566666777788889998888888888999999999999999999999999999999888888888888888888888
Q ss_pred cCChH
Q 005133 649 LKRSG 653 (713)
Q Consensus 649 ~g~~e 653 (713)
+|+.+
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 88754
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.76 E-value=0.015 Score=39.93 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhh
Q 005133 103 GHYLMGLIYRYTDRRKNAIHHYKMALSI 130 (713)
Q Consensus 103 ~~~llg~~~~~~~~~~~A~~~y~~Al~~ 130 (713)
++.-||.+|..+|+.++|+++|++||.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999997755
No 293
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.75 E-value=0.017 Score=38.31 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 672 PMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666654
No 294
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.65 E-value=2.2 Score=48.28 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCY 544 (713)
Q Consensus 465 ~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~ 544 (713)
...++..+|..+..+..|++|.++|.+.-. ...++.+++++..+++...+.. .-|++...+-.+|..+
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la~----~Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLAR----TLPEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHHH----hcCcccchHHHHHHHH
Confidence 345788899999999999999999987643 3456778888887777655544 4466667777778777
Q ss_pred HhcCCHHHHHHHHHH
Q 005133 545 SLQKDHETALKNFQR 559 (713)
Q Consensus 545 ~~~g~~~~Al~~~~k 559 (713)
...|.-++|.+.|-+
T Consensus 863 ~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLR 877 (1189)
T ss_pred HhhchHHHHHHHHHh
Confidence 777777777766643
No 295
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.60 E-value=0.037 Score=60.75 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=91.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005133 540 MGNCYSLQKDHETALKNFQRAVQLNPRFAY-GHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKF 618 (713)
Q Consensus 540 la~~~~~~g~~~~Al~~~~kal~~~p~~~~-a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~ 618 (713)
.|..+...|+...|++++..|+...|.... ....++.++..-|..-.|-..+.+++.+....+..++.+|.+|....+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 344455689999999999999988886543 4678899999999999999999999999888888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 619 EFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (713)
Q Consensus 619 ~eA~~~l~kal~~~p~~~~~~~~la~~~~ 647 (713)
+.|++.|+.|++.+|+++..-..+-.+..
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999887766655444
No 296
>PRK10941 hypothetical protein; Provisional
Probab=95.53 E-value=0.13 Score=52.92 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhH
Q 005133 639 MSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGV 706 (713)
Q Consensus 639 ~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 706 (713)
+.++-.+|...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34455555566666666666666666666666555566666666666666666666666666655544
No 297
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.48 E-value=2.7 Score=54.11 Aligned_cols=64 Identities=16% Similarity=0.033 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 635 ~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
-++.|...|.+....|+++.|..++-.|.+.. -+.++...|..++..|+-..|+.++++.++.+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 36789999999999999999999998888766 58899999999999999999999999999654
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.47 E-value=0.22 Score=46.59 Aligned_cols=119 Identities=11% Similarity=-0.006 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~ 614 (713)
..+..+..+-...++.+++...+.-.--+.|..+..-..-|+++...|++.+|+.+|+.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34556666677788888998888888888999998888899999999999999999999888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005133 615 QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAI 656 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl 656 (713)
+|+.+= ..+-.++++..+ ++.+.. +...+....+...|.
T Consensus 91 ~~D~~W-r~~A~evle~~~-d~~a~~-Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 91 LGDPSW-RRYADEVLESGA-DPDARA-LVRALLARADLEPAH 129 (160)
T ss_pred cCChHH-HHHHHHHHhcCC-ChHHHH-HHHHHHHhccccchh
Confidence 887542 122333444433 334333 333344444444433
No 299
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.41 E-value=0.069 Score=40.16 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYS 507 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la 507 (713)
++++.+|..++.+|+|++|..+.+.+++.+|++..+.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 46788999999999999999999999999999987765443
No 300
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.39 E-value=0.063 Score=57.62 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=86.4
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005133 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMM 659 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l 659 (713)
..|+.-.|-+-...+++..|.++......+.+....|+|+.|...+..+-..-.....+...+-...+++|++++|...-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 45677777777777777777777777777777777777777777766554443333344555556667777777777777
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhH
Q 005133 660 EKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGV 706 (713)
Q Consensus 660 ~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 706 (713)
+-.+...-+++++....+.....+|-+++|..++++++.+.|.....
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 77666666666666666666667777777777777777777654433
No 301
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.37 E-value=0.71 Score=43.49 Aligned_cols=142 Identities=12% Similarity=0.019 Sum_probs=94.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYN--TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS----LEGMDIYST 508 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~--~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~----~~a~~~la~ 508 (713)
.|..+..+...++.++|+..|..+.+.... ...+.+..|.+..+.|+-..|+..|..+-...|-- ..+...-+.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 344555666788999999999988765443 34567788889999999999999999987765422 233445566
Q ss_pred HHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 509 VLYHLKEDMKLSYLAQELI-TTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHE 577 (713)
Q Consensus 509 ~l~~~g~~~~A~~~~~kal-~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~ 577 (713)
++...|.+++.....+.+- +.+|-...+.-.+|..-++.|++.+|...|..+.. +...+......+.+
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 6777777777665554432 22344445566677777788888888888877665 33344444444433
No 302
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.21 E-value=0.21 Score=43.52 Aligned_cols=27 Identities=15% Similarity=0.125 Sum_probs=13.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005133 542 NCYSLQKDHETALKNFQRAVQLNPRFA 568 (713)
Q Consensus 542 ~~~~~~g~~~~Al~~~~kal~~~p~~~ 568 (713)
.-++..|++-+|+++.+..+...+++.
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 344455555555555555555544443
No 303
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.14 E-value=0.32 Score=52.97 Aligned_cols=93 Identities=12% Similarity=-0.020 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 005133 483 LEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKD-HETALKNFQRAV 561 (713)
Q Consensus 483 ~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~-~~~Al~~~~kal 561 (713)
..-...|+.+....+.+...|..+.......+.+.+....|.+++...|++++.|...|...+..+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 4456677777777777777777777777777777777778888888888888888777777666655 777778888888
Q ss_pred HhCCCCHHHHHHHH
Q 005133 562 QLNPRFAYGHTLCG 575 (713)
Q Consensus 562 ~~~p~~~~a~~~lg 575 (713)
+.+|+.+..|...-
T Consensus 168 R~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYF 181 (568)
T ss_pred hcCCCChHHHHHHH
Confidence 88888777765543
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.09 E-value=0.04 Score=37.78 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 673 MYQKANILLSLEKFDEALEVLEELK 697 (713)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~~~kal 697 (713)
+..||.+|..+|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 305
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.04 E-value=0.09 Score=39.54 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005133 639 MSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (713)
Q Consensus 639 ~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~ 673 (713)
++.+|..++++|+|++|+.+++.+++.+|++..+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34455555555555555555555555555554443
No 306
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=95.04 E-value=2.2 Score=43.83 Aligned_cols=102 Identities=10% Similarity=0.038 Sum_probs=48.8
Q ss_pred ccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHH-
Q 005133 444 CMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA-----SPYSLEGMDIYSTVLYHLKEDM- 517 (713)
Q Consensus 444 ~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~-----~p~~~~a~~~la~~l~~~g~~~- 517 (713)
.+++|++|++++.+ =+..+.+.|++.-|.+...-.++. .+.+.+....++.++......+
T Consensus 2 ~~kky~eAidLL~~--------------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS--------------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HTT-HHHHHHHHHH--------------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred ccccHHHHHHHHHH--------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence 35667777765543 334444445555444444333332 2233344445555555443221
Q ss_pred HHHHHHHHHHH------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005133 518 KLSYLAQELIT------TDRLAPQSWCAMGNCYSLQKDHETALKNFQR 559 (713)
Q Consensus 518 ~A~~~~~kal~------~~p~~~~~~~~la~~~~~~g~~~~Al~~~~k 559 (713)
+-..+..++++ ..-.+++.+..+|..|++.+++.+|..+|-.
T Consensus 68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 22222333332 2234678888888888888888888776643
No 307
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.02 E-value=9.6 Score=44.59 Aligned_cols=202 Identities=14% Similarity=0.045 Sum_probs=113.2
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------------HHHHHHHHHHHhcCCHHHHHHHH
Q 005133 496 SPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP------------------QSWCAMGNCYSLQKDHETALKNF 557 (713)
Q Consensus 496 ~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~------------------~~~~~la~~~~~~g~~~~Al~~~ 557 (713)
.|.+....+.++.++...|+..+|.....++-......+ +.+..........|+...|....
T Consensus 125 ~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~ 204 (644)
T PRK11619 125 KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLA 204 (644)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367777888888888888887777666555543332211 11222223333444444443332
Q ss_pred HHH-------------HHhCCC-----------CH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 005133 558 QRA-------------VQLNPR-----------FA--YGHTLCGHEYVALEDFENGIRSYQSALRVDARH----YNSWYG 607 (713)
Q Consensus 558 ~ka-------------l~~~p~-----------~~--~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~----~~~~~~ 607 (713)
..+ +..+|. .. .....++..-....+.+.|...+.+......-. ..++..
T Consensus 205 ~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 284 (644)
T PRK11619 205 KQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDI 284 (644)
T ss_pred HhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 211 001111 11 112233333444556677777776654433222 223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Q 005133 608 LGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFD 687 (713)
Q Consensus 608 lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~ 687 (713)
+|.-....+...+|...+..+.... .+...+.....+....++++.+..++...-..........|.+|+.+...|+.+
T Consensus 285 lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~ 363 (644)
T PRK11619 285 VAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKA 363 (644)
T ss_pred HHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHH
Confidence 4444444333566777776654332 233344444445557888888888887754444456788899999999999999
Q ss_pred HHHHHHHHHHH
Q 005133 688 EALEVLEELKE 698 (713)
Q Consensus 688 eA~~~~~kal~ 698 (713)
+|..+|+++..
T Consensus 364 ~A~~~~~~~a~ 374 (644)
T PRK11619 364 EAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHhc
Confidence 99999999744
No 308
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.99 E-value=0.72 Score=40.58 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005133 673 MYQKANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~~~kal~l 699 (713)
.+..+..+..+|+.++|+..|+++-++
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 355666777777777777777766553
No 309
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.96 E-value=0.033 Score=35.72 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhhCCc
Q 005133 102 AGHYLMGLIYRYTDRRKNAIHHYKMALSIDPL 133 (713)
Q Consensus 102 ~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~ 133 (713)
.+++.+|.+|..+++.++|+.+|+++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35789999999999999999999999999885
No 310
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.90 E-value=0.34 Score=52.75 Aligned_cols=95 Identities=8% Similarity=-0.015 Sum_probs=82.8
Q ss_pred HHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHH
Q 005133 449 KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE-DMKLSYLAQELI 527 (713)
Q Consensus 449 ~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~-~~~A~~~~~kal 527 (713)
..-..+|+.+....+.+...|........+.+.+.+--..|.+++..+|++++.|...|.-.+..+. .+.|..++.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 4456788888888888999999888877777889999999999999999999999999888887776 888999999999
Q ss_pred HhCCCCHHHHHHHHHH
Q 005133 528 TTDRLAPQSWCAMGNC 543 (713)
Q Consensus 528 ~~~p~~~~~~~~la~~ 543 (713)
+.+|+.+..|...-.+
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 9999999998765444
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.89 E-value=2.1 Score=40.44 Aligned_cols=137 Identities=11% Similarity=0.072 Sum_probs=86.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCC
Q 005133 544 YSLQKDHETALKNFQRAVQLNPRF--AYGHTLCGHEYVALEDFENGIRSYQSALRVDAR----HYNSWYGLGMVYLRQEK 617 (713)
Q Consensus 544 ~~~~g~~~~Al~~~~kal~~~p~~--~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~----~~~~~~~lg~~y~~~g~ 617 (713)
+...+..++|+..|...-+..-.. ..+....+.+....|+-..|+..|.++-...|- ...+...-+.++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 344567777887777766553332 334566677788888888888888887654432 12234455667777788
Q ss_pred HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005133 618 FEFSEHHFRMAF-QISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (713)
Q Consensus 618 ~~eA~~~l~kal-~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~ 681 (713)
|++-....+..- ..+|--..+...||..-++.|++.+|.++|.+... +...+....+.+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 887766655432 12333344666788888888888888888887665 4444555555554443
No 312
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.85 Score=48.75 Aligned_cols=127 Identities=16% Similarity=0.226 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----hHHHH
Q 005133 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE--KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR----SGEAI 656 (713)
Q Consensus 583 ~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g--~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~----~eeAl 656 (713)
-.++-+.+...+++.+|+...+|+....++.+.+ ++..=+++.+++++.+|.+-.+|...=.+...... ..+-+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 4667788888899999999999999999998877 47888999999999999988877766555544432 45668
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHH------cCC------HHHHHHHHHHHHHHCCCChhHHHh
Q 005133 657 EMMEKAILADKKNPLPMYQKANILLS------LEK------FDEALEVLEELKEYAPRESGVYAL 709 (713)
Q Consensus 657 ~~l~kal~~~p~~~~~~~~la~~~~~------~g~------~~eA~~~~~kal~l~P~~~~~~~~ 709 (713)
++..+++..++.+..+|.+...++.. .|+ ...-++....++-.+|+|..+|+.
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 88889998888888898887777662 231 234455666777789999888753
No 313
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.81 E-value=0.3 Score=41.29 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005133 588 IRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (713)
Q Consensus 588 l~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~ 634 (713)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 34455555555555555555555555555555555555555555443
No 314
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.77 E-value=0.089 Score=53.52 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 570 GHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA 645 (713)
Q Consensus 570 a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~ 645 (713)
+....+.-....|+.++|..+|+-|+.+.|++++++..+|......++.-+|-.+|-+|+.+.|.+.+++.+.+..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3344555567889999999999999999999999999999999888999999999999999999999988776544
No 315
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=1.1 Score=49.90 Aligned_cols=127 Identities=13% Similarity=0.004 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-HH
Q 005133 519 LSYLAQELITTDRLAPQSWCA--MGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQS-AL 595 (713)
Q Consensus 519 A~~~~~kal~~~p~~~~~~~~--la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~-al 595 (713)
+...+...+..++.++..+.. +...+...++...+.-.+..++..+|....++..++......|....++..+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444455566666655433 355566667777777777777777777777777777776666655555544444 66
Q ss_pred HhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 596 RVDARHYNSWYGL------GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA 645 (713)
Q Consensus 596 ~~~p~~~~~~~~l------g~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~ 645 (713)
...|++......+ +......|+..++...++++....|.++.+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 6677766654444 6666667777777777777777777776655555444
No 316
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.70 E-value=0.34 Score=48.22 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 637 VIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 637 ~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
.+.+.+|.+..+.|++++|+.+|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 35666777777777777777777776654
No 317
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.66 E-value=0.97 Score=50.59 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=27.8
Q ss_pred HHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005133 440 YRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLAR 493 (713)
Q Consensus 440 ~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal 493 (713)
+.++..|.+++|..+----+-. .-|-.+|.-..+.=+++-|.+.|.++.
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv~-----~DW~~LA~~ALeAL~f~~ARkAY~rVR 612 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVTD-----TDWRELAMEALEALDFETARKAYIRVR 612 (1081)
T ss_pred hhhhhccchhhhhcccccceec-----chHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 4456667777775433211111 124566666666677777777776664
No 318
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.59 E-value=0.42 Score=41.99 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-------HhCCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 536 SWCAMGNCYSLQKDHETALKNFQRAV-------QLNPRFAYGH----TLCGHEYVALEDFENGIRSYQSALR 596 (713)
Q Consensus 536 ~~~~la~~~~~~g~~~~Al~~~~kal-------~~~p~~~~a~----~~lg~~~~~~g~~eeAl~~~~~al~ 596 (713)
.+..++..+..+|+|++++....+++ +++.+....| +..+..+..+|+.++|+..|+.+-+
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 33445555555555555444444433 3444444333 3456667777777777777777654
No 319
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.48 E-value=0.11 Score=52.93 Aligned_cols=77 Identities=17% Similarity=0.109 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005133 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANIL 680 (713)
Q Consensus 604 ~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~ 680 (713)
.-...+.-..+.|+.++|..+|+.|+.+.|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.++..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 34455556678899999999999999999999999999999999999999999999999999999999988776543
No 320
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.47 E-value=0.35 Score=40.95 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHH
Q 005133 621 SEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN--PLPMYQKANILLSLEKFDEALEVLEE 695 (713)
Q Consensus 621 A~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~k 695 (713)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.-+.-...|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4567888899999999999999999999999999999999999887754 66777788888888875544444443
No 321
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.45 E-value=0.35 Score=42.20 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 005133 553 ALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597 (713)
Q Consensus 553 Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~ 597 (713)
++++|.++..+.|..+..++.+|.-+-....|++++...++++.+
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 566666666666666666666666666666667777766666654
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.40 E-value=0.45 Score=51.33 Aligned_cols=126 Identities=8% Similarity=-0.012 Sum_probs=109.2
Q ss_pred HccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 005133 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYL 522 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~ 522 (713)
...|+...|-.-+..++...|..+......+.+..++|+|+.|...+..+-..-..-..+...+...+..+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 46788889988888889999999999999999999999999999998887766555566677778888999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005133 523 AQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA 568 (713)
Q Consensus 523 ~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~ 568 (713)
.+-++...-+++++....+......|-+++|..++++.+.++|...
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 9999988888888888888888888999999999999999987543
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.30 E-value=0.48 Score=43.61 Aligned_cols=83 Identities=6% Similarity=-0.085 Sum_probs=61.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (713)
Q Consensus 571 ~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 650 (713)
+......-...++.+++...+...--+.|+.+..-..-|.++...|+|.+|+..|....+..+..+...-.++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 34444445557777888777777777788888888888888888888888888888877777677777777777777777
Q ss_pred ChH
Q 005133 651 RSG 653 (713)
Q Consensus 651 ~~e 653 (713)
+.+
T Consensus 93 Dp~ 95 (153)
T TIGR02561 93 DAE 95 (153)
T ss_pred ChH
Confidence 643
No 324
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=1.2 Score=49.79 Aligned_cols=142 Identities=14% Similarity=0.035 Sum_probs=108.3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005133 545 SLQKDHETALKNFQRAVQLNPRFAYGHTL--CGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSE 622 (713)
Q Consensus 545 ~~~g~~~~Al~~~~kal~~~p~~~~a~~~--lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~ 622 (713)
...+...-++..+...+.+++..+..+.. +...+...++...+.-.++.++..+|++..++.+|+......|....+.
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 42 NAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred cccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 33444445666777777777777766433 4677777888888999999999999999999999999888888666655
Q ss_pred HHHHH-HHHhCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 005133 623 HHFRM-AFQISPHSSVIMSYL------GTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKF 686 (713)
Q Consensus 623 ~~l~k-al~~~p~~~~~~~~l------a~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 686 (713)
..+.. +....|.+..+...+ +.....+|+..++...++++..+.|.++.+...+.....+...+
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 55544 888888888766555 88888888999999999999999999887777777665555544
No 325
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=5.7 Score=41.52 Aligned_cols=266 Identities=14% Similarity=0.072 Sum_probs=137.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHcCccc--CCC--------CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC---HHH
Q 005133 436 LGEGYRMSCMYRCKDALDVYLKLPHK--HYN--------TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS---LEG 502 (713)
Q Consensus 436 l~~a~~l~~~g~~~eAi~~l~~~~~~--~~~--------~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~---~~a 502 (713)
+..+.......++++++.+|..++.. .+. .......+|..|...|++.+-..........-..- ..+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 55666667777889999999887663 111 22356789999999998877665555543321111 111
Q ss_pred H--HHHHH-HHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CC--CC
Q 005133 503 M--DIYST-VLYHLKEDMKLSYLAQELITTDRLAP------QSWCAMGNCYSLQKDHETALKNFQRAVQL----NP--RF 567 (713)
Q Consensus 503 ~--~~la~-~l~~~g~~~~A~~~~~kal~~~p~~~------~~~~~la~~~~~~g~~~~Al~~~~kal~~----~p--~~ 567 (713)
- ..+.. ++..-+....-+.++..+++-..... ..-..+..+|...++|.+|+......+.. +. .-
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 0 01111 11111222333333333333221111 12234667778888888887776655532 21 12
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHH
Q 005133 568 AYGHTLCGHEYVALEDFENGIRSYQSALRV-----DARHYNS--WYGLGMVYLRQEKFEFSEHHFRMAFQISP---HSSV 637 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g~~eeAl~~~~~al~~-----~p~~~~~--~~~lg~~y~~~g~~~eA~~~l~kal~~~p---~~~~ 637 (713)
.+++..-...|....+..+|...+..|-.. .|....+ -..-|.++....+|.-|..+|-+|++-.. ++..
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 344555566666666666666666555332 1111111 12224455555677777777777765321 1122
Q ss_pred ---HHHHHHHHHHHcCChHHHHH--HHHHHHHhCCCChhHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCC
Q 005133 638 ---IMSYLGTAMHALKRSGEAIE--MMEKAILADKKNPLPMYQKANILLS--LEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 638 ---~~~~la~~~~~~g~~eeAl~--~l~kal~~~p~~~~~~~~la~~~~~--~g~~~eA~~~~~kal~l~P 701 (713)
.+-++-.+-..++..++--. .-+.+++....+..+....+.++.. +.+|+.|+..|+.-+..+|
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 22333334444455544322 2334445455566666666666543 3467777777766665554
No 326
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.15 E-value=0.49 Score=42.65 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005133 602 YNSWYGLGMVYLRQE---KFEFSEHHFRMAFQ-ISPHS-SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676 (713)
Q Consensus 602 ~~~~~~lg~~y~~~g---~~~eA~~~l~kal~-~~p~~-~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~l 676 (713)
....+++++++.... +..+.+.+++..++ -.|.. -+..+.|+..+++.|+|++|+.+++..++..|++.++....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 456667777776654 34556667777765 33322 34566677777777777777777777777777776665443
Q ss_pred H
Q 005133 677 A 677 (713)
Q Consensus 677 a 677 (713)
-
T Consensus 112 ~ 112 (149)
T KOG3364|consen 112 E 112 (149)
T ss_pred H
Confidence 3
No 327
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.03 E-value=0.09 Score=33.53 Aligned_cols=31 Identities=39% Similarity=0.600 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 672 PMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
++..+|.++...|++++|+..|++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455555555555555555555555555543
No 328
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=8.5 Score=41.23 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=94.2
Q ss_pred HHHccCHHHHHHHHHHHHHhC----C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCC-CHHHHHHH
Q 005133 510 LYHLKEDMKLSYLAQELITTD----R-----LAPQSWCAMGNCYSLQKDHETALKNFQRAVQL-----NPR-FAYGHTLC 574 (713)
Q Consensus 510 l~~~g~~~~A~~~~~kal~~~----p-----~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~-----~p~-~~~a~~~l 574 (713)
++..+++.+|..+-+..+..- . -....|+.+...|...++...-...+...+.. +.. .+.....+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 445577888877766655321 1 12356778888888888866665555554433 111 23345556
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHH
Q 005133 575 GHEYVALEDFENGIRSYQSALRVD----ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV------IMSYLGT 644 (713)
Q Consensus 575 g~~~~~~g~~eeAl~~~~~al~~~----p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~------~~~~la~ 644 (713)
-..|...+.|+.|.....+..--. ...+..++.+|.+..-+++|..|.++|-+|+...|++.. +...+..
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~iv 295 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIV 295 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHH
Confidence 777888889999988877764211 123556788899999999999999999999999997533 2223334
Q ss_pred HHHHcCChHH
Q 005133 645 AMHALKRSGE 654 (713)
Q Consensus 645 ~~~~~g~~ee 654 (713)
+-.-+|++.+
T Consensus 296 v~ll~geiPe 305 (493)
T KOG2581|consen 296 VELLLGEIPE 305 (493)
T ss_pred HHHHcCCCcc
Confidence 4445566654
No 329
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.00 E-value=2.8 Score=50.62 Aligned_cols=99 Identities=14% Similarity=0.016 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 471 QVGKAYFEVVDYLEAERAFTLARRASPYSL---EGMDIYSTVLYHLK-------EDMKLSYLAQELITTDRLAPQSWCAM 540 (713)
Q Consensus 471 ~lg~~~~~~g~~~eA~~~~~kal~~~p~~~---~a~~~la~~l~~~g-------~~~~A~~~~~kal~~~p~~~~~~~~l 540 (713)
....++...+.|+.|+..|+++....|... ++.+..|..+...- .+.+|+.-++++. -.|..|--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence 344566777888888888888888888664 44455555544321 1333444333332 234445556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 005133 541 GNCYSLQKDHETALKNFQRAVQLNPRFAYG 570 (713)
Q Consensus 541 a~~~~~~g~~~~Al~~~~kal~~~p~~~~a 570 (713)
|.+|..+|++++-+++|.-|++..|..+..
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 777777777777777777777776666544
No 330
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.90 E-value=0.52 Score=46.92 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHh----CC---CCHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCC------CCHHHHHH
Q 005133 548 KDHETALKNFQRAVQL----NP---RFAYGHTLCGHEYVALEDFE-------NGIRSYQSALRVDA------RHYNSWYG 607 (713)
Q Consensus 548 g~~~~Al~~~~kal~~----~p---~~~~a~~~lg~~~~~~g~~e-------eAl~~~~~al~~~p------~~~~~~~~ 607 (713)
..+++|++.|.-|+-. .. ..+..+..+|++|...|+.+ .|+..|+++++... +...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 4555666655555432 11 12456777888888888754 45555555554322 12567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005133 608 LGMVYLRQEKFEFSEHHFRMAFQISPH 634 (713)
Q Consensus 608 lg~~y~~~g~~~eA~~~l~kal~~~p~ 634 (713)
+|.++.+.|++++|+++|.+++.....
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999876433
No 331
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.85 E-value=0.89 Score=41.05 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005133 568 AYGHTLCGHEYVALE---DFENGIRSYQSALR-VDAR-HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMS 640 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g---~~eeAl~~~~~al~-~~p~-~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~ 640 (713)
....+.+++++.... +..+.+.+++..++ -.|. .-+..+.|+..+++.++|++++.++...++..|++..+..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 345566666665543 34566667777665 3333 3456666777777777777777777777777777665543
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.80 E-value=0.73 Score=42.43 Aligned_cols=80 Identities=11% Similarity=-0.002 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005133 539 AMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKF 618 (713)
Q Consensus 539 ~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~ 618 (713)
.+...-...++++++...+...--+.|+.+..-..-|.++...|++++|+.+|+....-.+..+...-.++.|+..+|+.
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33344445677777777777777777777777777777777777777777777777776666666666677777766654
No 333
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.76 E-value=17 Score=42.48 Aligned_cols=261 Identities=10% Similarity=-0.033 Sum_probs=161.3
Q ss_pred cCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHH
Q 005133 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL---KEDMKLSY 521 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~---g~~~~A~~ 521 (713)
.+.-++=+..++..+..++.....+..+-.++...|++++-...-.++.++.|..+..|..+..-...+ +...++..
T Consensus 92 ~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~ 171 (881)
T KOG0128|consen 92 EGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEE 171 (881)
T ss_pred cccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHH
Confidence 445556666666666666666677778888889999999988888888899999988887776654433 44566677
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHH
Q 005133 522 LAQELITTDRLAPQSWCAMGNCYSL-------QKDHETALKNFQRAVQLNPR-------FAYGHTLCGHEYVALEDFENG 587 (713)
Q Consensus 522 ~~~kal~~~p~~~~~~~~la~~~~~-------~g~~~~Al~~~~kal~~~p~-------~~~a~~~lg~~~~~~g~~eeA 587 (713)
++++++.. -.++..|...+..+.. .++++.....|.+++..--. ....+..+-..|...-..++-
T Consensus 172 ~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv 250 (881)
T KOG0128|consen 172 LFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQV 250 (881)
T ss_pred HHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 77777753 3456677777776654 35577777788887764211 123444455556666666777
Q ss_pred HHHHHHHHHhCCCCHHH----HHHHH--HHH-HHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCChH
Q 005133 588 IRSYQSALRVDARHYNS----WYGLG--MVY-LRQEKFEFSEHHFRMAFQ-------ISPHSSVIMSYLGTAMHALKRSG 653 (713)
Q Consensus 588 l~~~~~al~~~p~~~~~----~~~lg--~~y-~~~g~~~eA~~~l~kal~-------~~p~~~~~~~~la~~~~~~g~~e 653 (713)
+.++...+... -+..+ |.... .++ ....+++.|..-+.+.+. ..+.-...|..+-......|..-
T Consensus 251 ~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ 329 (881)
T KOG0128|consen 251 IALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPV 329 (881)
T ss_pred HHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCch
Confidence 77777777654 22221 11111 111 223455555555433332 22222334445555566667777
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCChhHH
Q 005133 654 EAIEMMEKAILADKKNPLPMYQKANILL-SLEKFDEALEVLEELKEYAPRESGVY 707 (713)
Q Consensus 654 eAl~~l~kal~~~p~~~~~~~~la~~~~-~~g~~~eA~~~~~kal~l~P~~~~~~ 707 (713)
.-...+++++...+.+...|...+...- .++-.+.+...+-+++...|-....|
T Consensus 330 ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~ 384 (881)
T KOG0128|consen 330 RIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLW 384 (881)
T ss_pred HHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHH
Confidence 7777778887777777777766665432 44455566666777777777655444
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.69 E-value=14 Score=40.94 Aligned_cols=201 Identities=11% Similarity=-0.041 Sum_probs=130.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 462 HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMG 541 (713)
Q Consensus 462 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 541 (713)
.+-+..++..+-.++-..-.+.-....+.+++... .+.-++..++.+|... ..++...+++++++.+-++...-..++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 34444555556666666667777778888888774 4566788888888887 667788889999999888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhC-CC--C---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHH-HHHHHHHH
Q 005133 542 NCYSLQKDHETALKNFQRAVQLN-PR--F---AYGHTLCGHEYVALEDFENGIRSYQSALRVDAR-HYNSW-YGLGMVYL 613 (713)
Q Consensus 542 ~~~~~~g~~~~Al~~~~kal~~~-p~--~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~-~~~~~-~~lg~~y~ 613 (713)
..|.. ++-.++..+|.+++... |. . .+.|..+-. +--.+.+.-+....+.-..... ...+. ..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 88887 88899999999988652 21 1 123333221 1133444444444443332221 22222 22334455
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHHhCC
Q 005133 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA--------------------LKRSGEAIEMMEKAILADK 667 (713)
Q Consensus 614 ~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~--------------------~g~~eeAl~~l~kal~~~p 667 (713)
...+|.+|++.+...++.+..+..+.-.+...+.. -.++.+|+.-|++.+..+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence 66789999999998888888877766665555444 3456667777777665544
No 335
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.60 E-value=0.08 Score=51.83 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=43.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005133 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (713)
Q Consensus 611 ~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~ 670 (713)
...+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445566777777777777777777777777777777777777777777777777777654
No 336
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=3.8 Score=45.73 Aligned_cols=28 Identities=4% Similarity=0.180 Sum_probs=14.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Q 005133 612 YLRQEKFEFSEHHFRMAFQISPH-SSVIM 639 (713)
Q Consensus 612 y~~~g~~~eA~~~l~kal~~~p~-~~~~~ 639 (713)
+.+.|-|.-|.++++-.++++|. ++.+.
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGI 380 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhH
Confidence 34445555555555555555555 44433
No 337
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.49 E-value=0.53 Score=56.98 Aligned_cols=163 Identities=15% Similarity=0.153 Sum_probs=124.6
Q ss_pred HHHHHHHHHhcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCC
Q 005133 537 WCAMGNCYSLQKDHETALK------NFQRA-VQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV--------DARH 601 (713)
Q Consensus 537 ~~~la~~~~~~g~~~~Al~------~~~ka-l~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~--------~p~~ 601 (713)
....|......|.+.+|.+ ++... -.+.|.....+..++.++...+++++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3455666666777877777 55532 3347788889999999999999999999998887644 3455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------
Q 005133 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI--------SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK------ 667 (713)
Q Consensus 602 ~~~~~~lg~~y~~~g~~~eA~~~l~kal~~--------~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p------ 667 (713)
...+.+++...+..++...|+..+.+++.+ .|.-.....+++.++...++++.|+++++.|+....
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 677888998888999999999999888765 344455667889999999999999999999998632
Q ss_pred --CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005133 668 --KNPLPMYQKANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 668 --~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 699 (713)
.....+..+++.+..++++..|+...+....+
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 13455677788888888888888777666553
No 338
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=0.65 Score=51.90 Aligned_cols=90 Identities=21% Similarity=0.300 Sum_probs=45.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005133 609 GMVYLRQEKFEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLS 682 (713)
Q Consensus 609 g~~y~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~ 682 (713)
|.-.++..+|..++++|...+..-|.+ ......++.||..+.+.+.|.+++++|-+.+|.++...+..-.+...
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 333444455555555555555443333 22334455555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 005133 683 LEKFDEALEVLEELKE 698 (713)
Q Consensus 683 ~g~~~eA~~~~~kal~ 698 (713)
.|.-++|+....+...
T Consensus 441 E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKS 456 (872)
T ss_pred hcchHHHHHHHHHHHh
Confidence 5555555555544443
No 339
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.46 E-value=0.85 Score=43.97 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----HH
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDAR---HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH--SSV----IM 639 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~---~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~--~~~----~~ 639 (713)
.++..+|..|.+.|++++|++.|.++...... ..+.++.+..+.+..++|..+..++.++-..-.. +.. +.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45566666666667777777776666554322 2345566666666667777776666666544221 111 23
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 005133 640 SYLGTAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 640 ~~la~~~~~~g~~eeAl~~l~kal 663 (713)
..-|..+...++|.+|...|-.+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 345566666677777777665554
No 340
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=11 Score=38.66 Aligned_cols=266 Identities=14% Similarity=0.064 Sum_probs=135.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHcCcccCC--------CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CCC--CHHH
Q 005133 436 LGEGYRMSCMYRCKDALDVYLKLPHKHY--------NTGWVLSQVGKAYFEVVDYLEAERAFTLARRA---SPY--SLEG 502 (713)
Q Consensus 436 l~~a~~l~~~g~~~eAi~~l~~~~~~~~--------~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~---~p~--~~~a 502 (713)
+..|..+....++++|+..|.+++.... ........++.+|...|++..--+......+. ... ....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4456666788899999999999876521 13346778999999998876544433332221 100 0000
Q ss_pred HHHHHHH-HHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHH
Q 005133 503 MDIYSTV-LYHLKEDMKLSYLAQELITTDRLAP------QSWCAMGNCYSLQKDHETALKNFQRAVQL------NPRFAY 569 (713)
Q Consensus 503 ~~~la~~-l~~~g~~~~A~~~~~kal~~~p~~~------~~~~~la~~~~~~g~~~~Al~~~~kal~~------~p~~~~ 569 (713)
...+..- -+.....+.-+.++...++-..... ..-+.+..++++.|+|.+|+......+.. .+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 0000000 0111123333333333333221111 22345667788888998888877665532 233455
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHH
Q 005133 570 GHTLCGHEYVALEDFENGIRSYQSALRV-----DARHYNSWY--GLGMVYLRQEKFEFSEHHFRMAFQIS---PHSSVIM 639 (713)
Q Consensus 570 a~~~lg~~~~~~g~~eeAl~~~~~al~~-----~p~~~~~~~--~lg~~y~~~g~~~eA~~~l~kal~~~---p~~~~~~ 639 (713)
++..-..+|....+..++...+..|-.. .|....+.. .-|.......+|.-|-.+|-++++-. ..+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 6666677777777777766666554332 232222222 22444556667888888887777642 2233332
Q ss_pred HHHH---HHHHHcCChHHHHHHH--HHHHH-hCCCChhHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCC
Q 005133 640 SYLG---TAMHALKRSGEAIEMM--EKAIL-ADKKNPLPMYQKANILL--SLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 640 ~~la---~~~~~~g~~eeAl~~l--~kal~-~~p~~~~~~~~la~~~~--~~g~~~eA~~~~~kal~l~P 701 (713)
..+- ..-...+..++-...+ +..++ .+.....+....+..+- .+.+|..|+..|..-+..+|
T Consensus 247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 2211 1112223333322222 12222 22334445555555543 34467777777766555443
No 341
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.28 E-value=5.9 Score=41.16 Aligned_cols=195 Identities=9% Similarity=0.012 Sum_probs=106.4
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 005133 470 SQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKD 549 (713)
Q Consensus 470 ~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 549 (713)
+.+.....+..+..+-++....+++++|.-..++..++.- ...-..+|..+++++++... ..+.........|.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSP 261 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhcc
Confidence 4455556666777777888888888888777776665532 12224556666666665321 12222222222222
Q ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 550 HETALKNFQRAVQLNPR-FAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH--YNSWYGLGMVYLRQEKFEFSEHHFR 626 (713)
Q Consensus 550 ~~~Al~~~~kal~~~p~-~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~--~~~~~~lg~~y~~~g~~~eA~~~l~ 626 (713)
..+|. .+.+-+ ..++...++.|..++|+..+|++.|+...+..|-. ..++-++...+....-|.+....+-
T Consensus 262 ~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 262 QHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred chhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 111111 13444568899999999999999999988776632 2334455555555554544444433
Q ss_pred HHHHh-CCCCHHHHHHHHHHH-------------HHcCC---hHHHHHHHHHHHHhCCCChhHHHHH
Q 005133 627 MAFQI-SPHSSVIMSYLGTAM-------------HALKR---SGEAIEMMEKAILADKKNPLPMYQK 676 (713)
Q Consensus 627 kal~~-~p~~~~~~~~la~~~-------------~~~g~---~eeAl~~l~kal~~~p~~~~~~~~l 676 (713)
+--++ .|..+.+.+.-+.+- .+.|- -..|++.+.++++.+|.-+..+..+
T Consensus 336 kYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 336 KYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred hhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHH
Confidence 33222 234333333222111 12221 2357888999999999777665443
No 342
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.23 E-value=0.21 Score=54.40 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005133 565 PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ---EKFEFSEHHFRMAFQISPHSSVIMSY 641 (713)
Q Consensus 565 p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~---g~~~eA~~~l~kal~~~p~~~~~~~~ 641 (713)
|...+.+..-|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...|++++|....+++.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 334444555555555566778888899999988888888888888888775 35667777788888888888888999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005133 642 LGTAMHALKRSGEAIEMMEKAILADKKN 669 (713)
Q Consensus 642 la~~~~~~g~~eeAl~~l~kal~~~p~~ 669 (713)
|+.++..++++.+|+.+...+....|.+
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9999999999999988887777666743
No 343
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.22 E-value=6.1 Score=41.04 Aligned_cols=202 Identities=12% Similarity=0.024 Sum_probs=119.9
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 495 ASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLC 574 (713)
Q Consensus 495 ~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~l 574 (713)
.+.+....-+.+....|+..+..+-+.....+++++|+.+.++..++.-- ..-..+|.+.|+++++.... -+..
T Consensus 179 Cd~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~----~yr~ 252 (556)
T KOG3807|consen 179 CDTDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET----IYRQ 252 (556)
T ss_pred ccccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH----HHhh
Confidence 34455555667778888888888888899999999999888888777532 23456788888888765321 1112
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCC
Q 005133 575 GHEYVALEDFENGIRSYQSALRVDAR-HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS--VIMSYLGTAMHALKR 651 (713)
Q Consensus 575 g~~~~~~g~~eeAl~~~~~al~~~p~-~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~--~~~~~la~~~~~~g~ 651 (713)
.......|...+| ..+.+.+ ...+...++.|..++|+..+|++.++...+..|-.. .++.++-..+..+.-
T Consensus 253 sqq~qh~~~~~da------~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA 326 (556)
T KOG3807|consen 253 SQQCQHQSPQHEA------QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA 326 (556)
T ss_pred HHHHhhhccchhh------hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222121 1222222 123345789999999999999999998887766322 244556666666655
Q ss_pred hHHHHHHHHHHHHh-CCCChhHHHHHHHH-------------HHHcCC---HHHHHHHHHHHHHHCCCChhHHH
Q 005133 652 SGEAIEMMEKAILA-DKKNPLPMYQKANI-------------LLSLEK---FDEALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 652 ~eeAl~~l~kal~~-~p~~~~~~~~la~~-------------~~~~g~---~~eA~~~~~kal~l~P~~~~~~~ 708 (713)
|.+....+-+.-++ .|......+.-+.+ ..+.|- -..|++.+.++++.+|.-+....
T Consensus 327 YADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 327 YADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHH
Confidence 55544444443332 23333222221111 112221 23588889999999998765443
No 344
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.12 E-value=3.7 Score=45.77 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=28.0
Q ss_pred hcHHHHHHHHHHHHHhC------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 480 VDYLEAERAFTLARRAS------------PYSLEGMDIYSTVLYHLKEDMKLSYLAQELI 527 (713)
Q Consensus 480 g~~~eA~~~~~kal~~~------------p~~~~a~~~la~~l~~~g~~~~A~~~~~kal 527 (713)
..|++|...|.-+.... |.+.+.+..++.+....|+.+-+..+.++++
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 45667777777666543 4455566666666666666555554444443
No 345
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.81 E-value=9.3 Score=46.31 Aligned_cols=130 Identities=13% Similarity=-0.041 Sum_probs=90.5
Q ss_pred HHHHHHHccCCHHHHHHHHHcCcccCCCC---HHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNT---GWVLSQVGKAYFEV-------VDYLEAERAFTLARRASPYSLEGMDIY 506 (713)
Q Consensus 437 ~~a~~l~~~g~~~eAi~~l~~~~~~~~~~---~~~~~~lg~~~~~~-------g~~~eA~~~~~kal~~~p~~~~a~~~l 506 (713)
+-...++....|+.|+..|+++....|.. .++.+..|....++ ..+++|+..|++... .|..+--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhH
Confidence 33445567788999999999998888753 45778888887765 257788888887653 35556667788
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCC
Q 005133 507 STVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQ-----KDHETALKNFQRAVQLNPRF 567 (713)
Q Consensus 507 a~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~-----g~~~~Al~~~~kal~~~p~~ 567 (713)
|.+|..+|++++-++.+.-+++..|.+|..-...-.+-.++ .+...|..+.--++...|..
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 88999999999999999999999999886543322222111 12334555555555555543
No 346
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.73 E-value=0.92 Score=55.03 Aligned_cols=170 Identities=16% Similarity=0.138 Sum_probs=100.7
Q ss_pred HHHHHHHHHHccCCHHHHHH------HHHc-CcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 434 RILGEGYRMSCMYRCKDALD------VYLK-LPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIY 506 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~------~l~~-~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~l 506 (713)
..+..+...+..+.+.+|.+ ++.. ....+|..+..|..++..+...+++++|+.+-.++.-+.
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~---------- 1003 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIIS---------- 1003 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeee----------
Confidence 34555666667777777766 4432 234566677777777777777777777777766665432
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Q 005133 507 STVLYHLKEDMKLSYLAQELITTD-RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL--------NPRFAYGHTLCGHE 577 (713)
Q Consensus 507 a~~l~~~g~~~~A~~~~~kal~~~-p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~--------~p~~~~a~~~lg~~ 577 (713)
++.+..+ |+....+..++...+..+....|+..+.++..+ .|.-......++.+
T Consensus 1004 -----------------eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l 1066 (1236)
T KOG1839|consen 1004 -----------------ERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELL 1066 (1236)
T ss_pred -----------------chhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHH
Confidence 1111111 223344555555556666666666666666554 34444555667777
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 578 YVALEDFENGIRSYQSALRVDAR--------HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 578 ~~~~g~~eeAl~~~~~al~~~p~--------~~~~~~~lg~~y~~~g~~~eA~~~l~kal~ 630 (713)
+...++++.|+.+.+.|+..... ....+..++.++...+++..|+...+....
T Consensus 1067 ~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1067 LLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 77777778888877777764321 233455566666666666666665555443
No 347
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.66 E-value=1.4 Score=42.40 Aligned_cols=98 Identities=13% Similarity=-0.025 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--Chh----H
Q 005133 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKK--NPL----P 672 (713)
Q Consensus 602 ~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~--~~~----~ 672 (713)
..++..+|..|.+.|++++|++.|.++....... .+++..+..+....+++.....++.++-..-.. +.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4678899999999999999999999988765433 347788889999999999999999998776332 222 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005133 673 MYQKANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~~~kal~l 699 (713)
....|..+...++|.+|...|-.+..-
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 345677778899999999888776543
No 348
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.32 E-value=0.26 Score=50.44 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=44.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 005133 525 ELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTL-CGHEYVALEDFENGIRSYQSALRVDARHYN 603 (713)
Q Consensus 525 kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~-lg~~~~~~g~~eeAl~~~~~al~~~p~~~~ 603 (713)
++....+.++..|...+......+-+.+--..|.++++.+|.+++.|.. .+.-+...++++.+...|.++++.+|+.+.
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3334445555555555555555555555555555555555555555544 344455555555555555555555555555
Q ss_pred HHH
Q 005133 604 SWY 606 (713)
Q Consensus 604 ~~~ 606 (713)
.|.
T Consensus 178 iw~ 180 (435)
T COG5191 178 IWI 180 (435)
T ss_pred HHH
Confidence 444
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.27 E-value=22 Score=39.45 Aligned_cols=238 Identities=13% Similarity=0.051 Sum_probs=144.8
Q ss_pred cCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 005133 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQ 524 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~ 524 (713)
++-.+.-..++.+-+....+...+++.-|.+-+.. .|-+...+..+..+.....+..-...++.
T Consensus 27 ~~~~~~~~~ic~~hl~~~k~si~~lyisg~~~~s~----------------~~l~d~~l~~~~~~f~~n~k~~~veh~c~ 90 (711)
T COG1747 27 QSILDVLKGICDEHLAHSKNSIIALYISGIISLSK----------------QLLDDSCLVTLLTIFGDNHKNQIVEHLCT 90 (711)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh----------------ccccchHHHHHHHHhccchHHHHHHHHHH
Confidence 33344444555554544444444555444433322 22222333333333333334444455666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC--
Q 005133 525 ELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD-ARH-- 601 (713)
Q Consensus 525 kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~-p~~-- 601 (713)
+++... .+..+++.++.+|... ..++-...+++.++.+-++...-..++..|.. ++.+.+..+|.+++... |..
T Consensus 91 ~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~ 167 (711)
T COG1747 91 RVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQN 167 (711)
T ss_pred HHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhh
Confidence 666654 4567899999999988 66788889999999988888877788887766 88999999999998643 211
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005133 602 ---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH-SSVI-MSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676 (713)
Q Consensus 602 ---~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~-~~~~-~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~l 676 (713)
-+.|-.+-.. --.+.+.-+....+.-+.... ...+ +..+-.-|....++.+|+..+.-.++.+..+..+...+
T Consensus 168 ~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~ 245 (711)
T COG1747 168 AAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEI 245 (711)
T ss_pred hhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHH
Confidence 1223322211 123455444444443332221 1222 22233445566789999999999999998888887777
Q ss_pred HHHHHH--------------------cCCHHHHHHHHHHHHHHCCCC
Q 005133 677 ANILLS--------------------LEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 677 a~~~~~--------------------~g~~~eA~~~~~kal~l~P~~ 703 (713)
..-+.. -.++.+|+..|++.+-++..+
T Consensus 246 i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 246 IENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 666555 456777888888777766554
No 350
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=12 Score=43.67 Aligned_cols=242 Identities=11% Similarity=0.052 Sum_probs=134.7
Q ss_pred HHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHH
Q 005133 442 MSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA-SPYSLEGMDIYSTVLYHLKEDMKLS 520 (713)
Q Consensus 442 l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~-~p~~~~a~~~la~~l~~~g~~~~A~ 520 (713)
+.+..-|+-|+.+.+..-........+....|..++..|++++|...|-+.+.. +|...- .-+....+..+..
T Consensus 344 L~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi------~kfLdaq~IknLt 417 (933)
T KOG2114|consen 344 LFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI------KKFLDAQRIKNLT 417 (933)
T ss_pred HHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH------HHhcCHHHHHHHH
Confidence 345667888998887765544456678888999999999999999999998864 222111 1112333445555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHh
Q 005133 521 YLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGH---TLCGHEYVALEDFENGIRSYQSALRV 597 (713)
Q Consensus 521 ~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~---~~lg~~~~~~g~~eeAl~~~~~al~~ 597 (713)
.+++.+.+..-.+.+--..+-.+|.++++.++-.++.++. + ..... -..-.++...+-+++|..+..+.-
T Consensus 418 ~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~----~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~-- 490 (933)
T KOG2114|consen 418 SYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKC----D-KGEWFFDVETALEILRKSNYLDEAELLATKFK-- 490 (933)
T ss_pred HHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcC----C-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhc--
Confidence 6666776666555555667778899999887766665542 2 11111 011122333333444443333321
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-C-CCChhH--
Q 005133 598 DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS-SVIMSYLGTAMHALKRSGEAIEMMEKAILA-D-KKNPLP-- 672 (713)
Q Consensus 598 ~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~-~~~~~~la~~~~~~g~~eeAl~~l~kal~~-~-p~~~~~-- 672 (713)
.+. ..+-.++...++|++|++++... .|.. .......|..+... ..++-...+-+.+.. . +.....
T Consensus 491 --~he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~~~~s 561 (933)
T KOG2114|consen 491 --KHE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKGKSLS 561 (933)
T ss_pred --cCH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 112 23344566788999999988652 2222 22344556665543 344444444444332 1 111100
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 673 --MYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 673 --~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
....-.+..-.++++.-..+++...+..|+.++
T Consensus 562 ~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 562 NIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred cCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 012233344556677776777667776666544
No 351
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.98 E-value=0.19 Score=49.26 Aligned_cols=62 Identities=16% Similarity=0.313 Sum_probs=56.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005133 576 HEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV 637 (713)
Q Consensus 576 ~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~ 637 (713)
......++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34567889999999999999999999999999999999999999999999999999998743
No 352
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.91 E-value=1.8 Score=48.68 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARRASPYS------LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGN 542 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~------~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~ 542 (713)
+..-|.-+++..+|..++++|...+..-|.+ ......++.||..+.+.++|.++++++-+.+|..+-....+..
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3445555666666666666666666655533 2334455566666666666666666666666666666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 005133 543 CYSLQKDHETALKNFQRAVQ 562 (713)
Q Consensus 543 ~~~~~g~~~~Al~~~~kal~ 562 (713)
+....+.-++|+.+......
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHhcchHHHHHHHHHHHh
Confidence 66666666666666655543
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.85 E-value=4 Score=45.41 Aligned_cols=44 Identities=7% Similarity=-0.248 Sum_probs=17.7
Q ss_pred HccCCHHHHHHHHH--cCcccCCCCHHHHHHHHHHHHHhhcHHHHHHH
Q 005133 443 SCMYRCKDALDVYL--KLPHKHYNTGWVLSQVGKAYFEVVDYLEAERA 488 (713)
Q Consensus 443 ~~~g~~~eAi~~l~--~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 488 (713)
+..++++++..+.. +++..-| ......++..+..+|.++.|+.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhh
Confidence 45677777655554 2332222 22244455555555666655554
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.80 E-value=3.7 Score=45.62 Aligned_cols=158 Identities=14% Similarity=0.041 Sum_probs=92.9
Q ss_pred HHHHhhcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005133 475 AYFEVVDYLEAERAFTLARRASPYS-LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETA 553 (713)
Q Consensus 475 ~~~~~g~~~eA~~~~~kal~~~p~~-~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A 553 (713)
.....++++++.+..+.. ++-|.- .......+..+...|-.+.|+.+. .+++..+.+ ..+.|+.+.|
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHHH
Confidence 345578888877777522 111211 334566777788888888887653 234444443 4577888888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005133 554 LKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP 633 (713)
Q Consensus 554 l~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p 633 (713)
.+..++ .++...|..+|...+.+|+++-|..+|+++- -+..|..+|.-.|+-+.-.++.+.+.....
T Consensus 338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 776543 3467789999999999999999999998862 244666777788887766666666655432
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005133 634 HSSVIMSYLGTAMHALKRSGEAIEMMEKA 662 (713)
Q Consensus 634 ~~~~~~~~la~~~~~~g~~eeAl~~l~ka 662 (713)
.+ ..-.+++.+|+.++.++.+.++
T Consensus 405 ~n-----~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 IN-----IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HH-----HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HH-----HHHHHHHHcCCHHHHHHHHHHc
Confidence 21 2223444557777777666553
No 355
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.41 E-value=31 Score=40.46 Aligned_cols=239 Identities=8% Similarity=-0.035 Sum_probs=149.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHh---hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEV---VDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~---g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~ 511 (713)
....-..+...|++++-...-.++....|..+++|.....-...+ ++-.++...|++++... ..+..|..++..+.
T Consensus 116 ~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~ 194 (881)
T KOG0128|consen 116 MVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWEEVVNYLV 194 (881)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHHHHHHHHH
Confidence 334444556677777766666666666777777776655444332 78888999999998643 44555655555444
Q ss_pred H-------ccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH----HHH
Q 005133 512 H-------LKEDMKLSYLAQELITTDRL-------APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYG----HTL 573 (713)
Q Consensus 512 ~-------~g~~~~A~~~~~kal~~~p~-------~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a----~~~ 573 (713)
. .++++....++++++..--. ..+.+..+-..|...-..++-+.++.+.+... -+.++ |..
T Consensus 195 ~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~ 273 (881)
T KOG0128|consen 195 GFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSE 273 (881)
T ss_pred hccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHH
Confidence 3 34567778888888864322 12344445555666666677888888877764 32221 222
Q ss_pred HH--HH-HHHccCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 574 CG--HE-YVALEDFENGIRSYQSA-------LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLG 643 (713)
Q Consensus 574 lg--~~-~~~~g~~eeAl~~~~~a-------l~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 643 (713)
.. ++ .....+++.|..-+.+. ++..+.....|..+..-....|+.-.-...+++++...+.+...|...+
T Consensus 274 ~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~ 353 (881)
T KOG0128|consen 274 QSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYG 353 (881)
T ss_pred HHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhh
Confidence 22 22 23445666666554433 3334444556667777777888888888889999888888888887776
Q ss_pred HHHH-HcCChHHHHHHHHHHHHhCCCChhHHHH
Q 005133 644 TAMH-ALKRSGEAIEMMEKAILADKKNPLPMYQ 675 (713)
Q Consensus 644 ~~~~-~~g~~eeAl~~l~kal~~~p~~~~~~~~ 675 (713)
...- .++-.+.+...+-+++...|-....|..
T Consensus 354 ~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~r 386 (881)
T KOG0128|consen 354 VYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKR 386 (881)
T ss_pred hhcccccccccccccccchhhcCCchHHHHHHH
Confidence 5543 3455666777788888877765555533
No 356
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.35 E-value=19 Score=36.99 Aligned_cols=140 Identities=15% Similarity=0.050 Sum_probs=74.5
Q ss_pred HhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCHH-
Q 005133 478 EVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITT-----DRLAPQSWCAMGNCYSLQKDHE- 551 (713)
Q Consensus 478 ~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~-----~p~~~~~~~~la~~~~~~g~~~- 551 (713)
.+++|++|++.+.... ..+.+.++...|.++..-.++. .+.+....-.++.++.....-+
T Consensus 2 ~~kky~eAidLL~~Ga--------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA--------------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HTT-HHHHHHHHHHHH--------------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred ccccHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence 4678889988877663 3445555555544443333322 1223333345555554443222
Q ss_pred HHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH----------------HHhCCCCHHHHHHHH
Q 005133 552 TALKNFQRAVQL------NPRFAYGHTLCGHEYVALEDFENGIRSYQSA----------------LRVDARHYNSWYGLG 609 (713)
Q Consensus 552 ~Al~~~~kal~~------~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a----------------l~~~p~~~~~~~~lg 609 (713)
+-.++.+++++. .-.++..+..+|..|.+.+++.+|..+|-.. .+-.|...+.+...+
T Consensus 68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA 147 (260)
T ss_dssp THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 223333444433 2246789999999999999999988877321 122445555555444
Q ss_pred H-HHHHcCCHHHHHHHHHHHHHh
Q 005133 610 M-VYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 610 ~-~y~~~g~~~eA~~~l~kal~~ 631 (713)
. .|...++...|...+..-.+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 3 456668888888777665544
No 357
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.32 E-value=4.3 Score=45.75 Aligned_cols=176 Identities=10% Similarity=0.018 Sum_probs=83.6
Q ss_pred HHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHH------HHhCCCCHHHHHHHHHHH
Q 005133 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLA------RRASPYSLEGMDIYSTVL 510 (713)
Q Consensus 437 ~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ka------l~~~p~~~~a~~~la~~l 510 (713)
.+||.-.+.-.|-+-+--+++..+.....-. ..+|..+...|++.+|.+.|.+. +++..+ --++-++.-+
T Consensus 605 RkAY~rVRdl~~L~li~EL~~~k~rge~P~~--iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~ 680 (1081)
T KOG1538|consen 605 RKAYIRVRDLRYLELISELEERKKRGETPND--LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEF 680 (1081)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCCchH--HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHH
Confidence 3455555555555555555554333221111 34677777777888887777653 333211 1234445555
Q ss_pred HHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHH----------HHHHHhCCCCHHHHHHHHHHH
Q 005133 511 YHLKEDMKLSYLAQELIT--TDRLAPQSWCAMGNCYSLQKDHETALKNF----------QRAVQLNPRFAYGHTLCGHEY 578 (713)
Q Consensus 511 ~~~g~~~~A~~~~~kal~--~~p~~~~~~~~la~~~~~~g~~~~Al~~~----------~kal~~~p~~~~a~~~lg~~~ 578 (713)
...|..++-..+.++-.+ .+-+.|. ..|.++...|+.++|+... +-+-+++..+.+.+..++..+
T Consensus 681 ~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~yl 757 (1081)
T KOG1538|consen 681 LGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYL 757 (1081)
T ss_pred hhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHH
Confidence 555555444444333222 1111121 2345555666666665432 222233444445555555555
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005133 579 VALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRM 627 (713)
Q Consensus 579 ~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~k 627 (713)
.....+.-|-++|.+.-. ...+..++...++|++|..+.++
T Consensus 758 k~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred hhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhh
Confidence 555555555555555311 11233344445555555544443
No 358
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.01 E-value=0.57 Score=51.23 Aligned_cols=100 Identities=15% Similarity=0.025 Sum_probs=83.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHh---hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEV---VDYLEAERAFTLARRASPYSLEGMDIYSTVL 510 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~---g~~~eA~~~~~kal~~~p~~~~a~~~la~~l 510 (713)
..+..|...+..+.+..|+..|.+++...|....++...+.+++.. |+.-.|+.....+++++|....+++.++.++
T Consensus 376 ~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 376 KFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARAL 455 (758)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHH
Confidence 3445566666677788899999999999999888888888888875 6777888888899999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCC
Q 005133 511 YHLKEDMKLSYLAQELITTDRLA 533 (713)
Q Consensus 511 ~~~g~~~~A~~~~~kal~~~p~~ 533 (713)
..++++.+|+.....+....|.+
T Consensus 456 ~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 456 NELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999888887777744
No 359
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.96 E-value=0.52 Score=48.29 Aligned_cols=85 Identities=9% Similarity=0.033 Sum_probs=56.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005133 557 FQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYG-LGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (713)
Q Consensus 557 ~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~-lg~~y~~~g~~~eA~~~l~kal~~~p~~ 635 (713)
|.++....++++..|...+......+.|.+--..|.+++..+|.+++.|.. -+.-+...++++.+...|.+++..+|+.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 444444556667777776666666667777777777777777777777665 4455566667777777777777777777
Q ss_pred HHHHHH
Q 005133 636 SVIMSY 641 (713)
Q Consensus 636 ~~~~~~ 641 (713)
+.+|..
T Consensus 176 p~iw~e 181 (435)
T COG5191 176 PRIWIE 181 (435)
T ss_pred chHHHH
Confidence 766644
No 360
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.89 E-value=0.51 Score=32.83 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005133 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 604 ~~~~lg~~y~~~g~~~eA~~~l~kal~~ 631 (713)
++.++|.+|..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4445555555555555555555555443
No 361
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.84 E-value=12 Score=40.31 Aligned_cols=127 Identities=15% Similarity=0.148 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHH
Q 005133 549 DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALED--FENGIRSYQSALRVDARHYNSWYGLGMVYLRQE----KFEFSE 622 (713)
Q Consensus 549 ~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~--~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g----~~~eA~ 622 (713)
-.++-+.+...+++.+|+...+|+...+++.+.+. +..-+++++++++.+|.+..+|...=.++.... ...+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 34555666666777777777777777777665543 466677777777777777666655544443332 244556
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc------CC------hHHHHHHHHHHHHhCCCChhHHHH
Q 005133 623 HHFRMAFQISPHSSVIMSYLGTAMHAL------KR------SGEAIEMMEKAILADKKNPLPMYQ 675 (713)
Q Consensus 623 ~~l~kal~~~p~~~~~~~~la~~~~~~------g~------~eeAl~~l~kal~~~p~~~~~~~~ 675 (713)
++..+++..++.+..+|.+...++..+ |+ ...-++....|+-.+|++..+|+.
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 666666666666666666665555421 21 123344455555567777766655
No 362
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.62 E-value=5.1 Score=40.86 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 638 ~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
+...+|..|+..|++++|+++|+.+....... ..+...+..|+...|+.+..+.+.-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45567888888888888888888876553322 345567778888888887776655444
No 363
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=31 Score=37.20 Aligned_cols=135 Identities=13% Similarity=-0.011 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCC---------CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC--CC-
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHY---------NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP--YS- 499 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~---------~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p--~~- 499 (713)
.+..+--...++.+.++++|..+-+..+.... -.+.+|+.+..+|...|+...-...+...+.... ++
T Consensus 126 aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~ 205 (493)
T KOG2581|consen 126 AYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDE 205 (493)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcc
Confidence 34444444556677888888888776543210 1234555666666666665554444444443321 11
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005133 500 ---LEGMDIYSTVLYHLKEDMKLSYLAQELITTD----RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR 566 (713)
Q Consensus 500 ---~~a~~~la~~l~~~g~~~~A~~~~~kal~~~----p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~ 566 (713)
......+...|.+.+.++.|..+..+..--. ...+..++.+|.+..-+++|..|.++|-.|+...|.
T Consensus 206 e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 206 EGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 1122333344444455555544443332100 012234445555555555555555555555555554
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.79 E-value=2.1 Score=34.91 Aligned_cols=63 Identities=17% Similarity=0.065 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHH---HHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005133 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGW---VLSQVGKAYFEVVDYLEAERAFTLARRA 495 (713)
Q Consensus 433 l~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~---~~~~lg~~~~~~g~~~eA~~~~~kal~~ 495 (713)
...+.+|..++...+.++|+..+.++++..++.+. ++-.+..+|...|+|++++++...=+++
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888899999999988876655444 4555666778888888888776655443
No 365
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.78 E-value=0.72 Score=32.05 Aligned_cols=30 Identities=23% Similarity=0.160 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRA 495 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~ 495 (713)
..++..+|.+|...|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788999999999999999999999876
No 366
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=89.55 E-value=3 Score=36.02 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=62.4
Q ss_pred HHHHHHhhccchhhHHHHHhhhhcCCCchh-HHHHHHHHhhcCCHHHHHHHHhcCCCcchhHHHHHHHhhcCChhHHHHh
Q 005133 8 CVQNSLRYFMYRNAIFLCERLCAEFPSEVN-LQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSEAEAA 86 (713)
Q Consensus 8 ~i~~~l~~~~~~~A~flaerl~a~~~~~~~-~~llA~~~~~~~~~~~A~~~l~~~~~~~~~~l~A~~~~~l~~~~ea~~~ 86 (713)
+---.--+|.++.|.-.++-|-.+....|. ...-...++..|+|.+|+..-.....|...=++|.|-.++|--++++.-
T Consensus 12 lAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 12 LALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAWKLGLASALESR 91 (116)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHHhhccHHHHHHH
Confidence 333344578899999999999999887774 5666999999999999955555568899999999999999999999887
Q ss_pred hC
Q 005133 87 LS 88 (713)
Q Consensus 87 L~ 88 (713)
|.
T Consensus 92 l~ 93 (116)
T PF09477_consen 92 LT 93 (116)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 367
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=1.5 Score=44.68 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005133 607 GLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (713)
Q Consensus 607 ~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~ 674 (713)
++=..+...++++.|....++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+++.+-.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 34444555556666666666666666666655555666666666666666666665665555554433
No 368
>PRK12798 chemotaxis protein; Reviewed
Probab=88.86 E-value=39 Score=36.75 Aligned_cols=194 Identities=13% Similarity=0.032 Sum_probs=128.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccC-CCCHHHH-HHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH--H-HHHHHHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKH-YNTGWVL-SQVGKAYFEVVDYLEAERAFTLARRASPYSL--E-GMDIYST 508 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~-~~~~~~~-~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~--~-a~~~la~ 508 (713)
..+..|...+-.|+-.+|.+.+..+.... |...-.+ ....-..+...+..+|+++|+.+.-..|... + ++..-..
T Consensus 114 ~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~ 193 (421)
T PRK12798 114 QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLF 193 (421)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhH
Confidence 55667777778999999999999875432 2222233 3333445566899999999999999988652 3 3334445
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHh-CCC-CHHHHHHHHHHHHHccC
Q 005133 509 VLYHLKEDMKLSYLAQELITTDRLAPQS---WCAMGNCYSLQKDHETALKNFQRAVQL-NPR-FAYGHTLCGHEYVALED 583 (713)
Q Consensus 509 ~l~~~g~~~~A~~~~~kal~~~p~~~~~---~~~la~~~~~~g~~~~Al~~~~kal~~-~p~-~~~a~~~lg~~~~~~g~ 583 (713)
+....|+.++...+..+.+..+..++.+ +-.+...+....+-..- ..+...+.. +|. ...+|..++..-...|+
T Consensus 194 la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk 272 (421)
T PRK12798 194 IAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGK 272 (421)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCc
Confidence 5578899999999988888888776643 33334444433322211 224444443 443 35678888888888999
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 584 FENGIRSYQSALRVDAR----HYNSWYGLGMVYLRQEKFEFSEHHFRMA 628 (713)
Q Consensus 584 ~eeAl~~~~~al~~~p~----~~~~~~~lg~~y~~~g~~~eA~~~l~ka 628 (713)
.+-|...-++++.+... ...+..+-+....-..++++|++.+...
T Consensus 273 ~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 273 TELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 99999888888887532 3445555555555666778877777653
No 369
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=88.50 E-value=31 Score=36.31 Aligned_cols=186 Identities=13% Similarity=0.068 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (713)
Q Consensus 516 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al 595 (713)
-.+++.+-.-+..+.|..++++-.++.++....+...=...=-..+-+..++...| ..+-.+++...+.+++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW--------~r~lI~eg~all~rA~ 283 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLW--------DRALIDEGLALLDRAL 283 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhh--------hHHHHHHHHHHHHHHH
Confidence 46788888888888898898888877776543321110000000011112222222 2234567777777777
Q ss_pred HhC-CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CC
Q 005133 596 RVD-ARHYNSWYGLGMVYLR-----QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA--DK 667 (713)
Q Consensus 596 ~~~-p~~~~~~~~lg~~y~~-----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~--~p 667 (713)
... |.-+...-.++.++.. .-+|..-..+|.-...+.|. +.+-.+.+.+..+..-.+.++...+..... -.
T Consensus 284 ~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~ 362 (415)
T COG4941 284 ASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLD 362 (415)
T ss_pred HcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccc
Confidence 653 4434444444444433 23677777777766666654 455556677766666677777777665543 22
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhc
Q 005133 668 KNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALM 710 (713)
Q Consensus 668 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~L 710 (713)
.....+-..|..+.++|+.++|...|++++.+.++..+..+.+
T Consensus 363 gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 363 GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 3445566788899999999999999999999988877665543
No 370
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.38 E-value=24 Score=33.80 Aligned_cols=52 Identities=19% Similarity=0.070 Sum_probs=35.5
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Q 005133 646 MHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSL----EKFDEALEVLEELKEY 699 (713)
Q Consensus 646 ~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~----g~~~eA~~~~~kal~l 699 (713)
+.-.++.++|.++--+|.+++ ++.+..++.+.|..- .+-++|..+-.++.++
T Consensus 178 ~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 334467788888888877764 567777777777532 3567787777777765
No 371
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.33 E-value=3 Score=42.54 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhH
Q 005133 640 SYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGV 706 (713)
Q Consensus 640 ~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 706 (713)
.++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|+..++..++..|+++.+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 3444555566666666666666666666666666666666666666666666666666666665544
No 372
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.27 E-value=0.7 Score=32.09 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhhC
Q 005133 102 AGHYLMGLIYRYTDRRKNAIHHYKMALSID 131 (713)
Q Consensus 102 ~~~~llg~~~~~~~~~~~A~~~y~~Al~~~ 131 (713)
-+|.+||.+....+++.+|++-|++||++-
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999873
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.20 E-value=3 Score=35.64 Aligned_cols=74 Identities=14% Similarity=0.036 Sum_probs=63.7
Q ss_pred hhccchhhHHHHHhhhhcCCCchh-HHHHHHHHhhcCCHHHHHHHHhcCCCcchhHHHHHHHhhcCChhHHHHhh
Q 005133 14 RYFMYRNAIFLCERLCAEFPSEVN-LQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSEAEAAL 87 (713)
Q Consensus 14 ~~~~~~~A~flaerl~a~~~~~~~-~~llA~~~~~~~~~~~A~~~l~~~~~~~~~~l~A~~~~~l~~~~ea~~~L 87 (713)
-+|.++.|.-.|+-|......+|. ...-...++..|+|..|..+++....|.+--++|.|-.++|--.+.+.-|
T Consensus 17 G~HcHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~rlGl~s~l~~rl 91 (115)
T TIGR02508 17 GHHCHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEWRLGLGSALESRL 91 (115)
T ss_pred cchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHHhhccHHHHHHHH
Confidence 367889999999999888866664 45557889999999999999999889999999999999999988887766
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.78 E-value=25 Score=42.08 Aligned_cols=161 Identities=13% Similarity=0.052 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHH-HH----
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARR----ASPYSLEGMDIYSTVLYHLKED--MKLSYLAQELITTDRLAPQ-SW---- 537 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~----~~p~~~~a~~~la~~l~~~g~~--~~A~~~~~kal~~~p~~~~-~~---- 537 (713)
+..++..|...|++++|++.+.+... .++.....+......+..++.. +-...+..=.+..+|.... ++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 67889999999999999999999987 3444455555655566666654 4455555555555554221 00
Q ss_pred --------HHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--------cCHHHHHHH--HHHHHHh-
Q 005133 538 --------CAMGNCYSLQKDHETALKNFQRAVQLNPR-FAYGHTLCGHEYVAL--------EDFENGIRS--YQSALRV- 597 (713)
Q Consensus 538 --------~~la~~~~~~g~~~~Al~~~~kal~~~p~-~~~a~~~lg~~~~~~--------g~~eeAl~~--~~~al~~- 597 (713)
...-.-|......+-++.+++.++..... ....+..++..|... ++-+++.+. .++....
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 01122355667778888888888877554 344444444444332 122233333 2222211
Q ss_pred ------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 598 ------DAR-------HYNSWYGLGMVYLRQEKFEFSEHHFRMAF 629 (713)
Q Consensus 598 ------~p~-------~~~~~~~lg~~y~~~g~~~eA~~~l~kal 629 (713)
+|. ....|...+.++.+.|+.++|+..|-..+
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 121 13456666777777777777777765544
No 375
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=87.73 E-value=21 Score=37.43 Aligned_cols=186 Identities=11% Similarity=-0.035 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005133 483 LEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQ 562 (713)
Q Consensus 483 ~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~ 562 (713)
++|+..-+-...+.|..++++-..+.++.+..+...-...--..+-+...+ ..++..+-.+++...+.+++.
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQD--------r~lW~r~lI~eg~all~rA~~ 284 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQD--------RSLWDRALIDEGLALLDRALA 284 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccc--------hhhhhHHHHHHHHHHHHHHHH
Confidence 566666666777777777777666665554322111000000000111112 223334455677777777776
Q ss_pred hCC-CCHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Q 005133 563 LNP-RFAYGHTLCGHEYVA-----LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI--SPH 634 (713)
Q Consensus 563 ~~p-~~~~a~~~lg~~~~~-----~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~--~p~ 634 (713)
... .-......++.++.. .-+|..-..+|.-...+.|. +.+-.+.+....+..-.+.++...+..... -..
T Consensus 285 ~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~g 363 (415)
T COG4941 285 SRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDG 363 (415)
T ss_pred cCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccccccc
Confidence 533 222222223333322 34566666667766666665 444455566555555566666666655443 122
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005133 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (713)
Q Consensus 635 ~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la 677 (713)
...++...|.++.++|+.++|...|++++.+.++..+..+.+.
T Consensus 364 y~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 364 YHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred ccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 3335566788888999999999999999988877665544433
No 376
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.15 E-value=5.2 Score=33.98 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=10.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal~ 630 (713)
..+|.++...|++++|+..++++++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 377
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=87.02 E-value=21 Score=39.41 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=13.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 005133 609 GMVYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 609 g~~y~~~g~~~eA~~~l~kal~~ 631 (713)
|.-|.+.|+...|+.+|.+|+..
T Consensus 377 g~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 377 GHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 44555556666666666655544
No 378
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.87 E-value=3 Score=44.66 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=71.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC-------------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005133 574 CGHEYVALEDFENGIRSYQSALRVDAR-------------H-----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (713)
Q Consensus 574 lg~~~~~~g~~eeAl~~~~~al~~~p~-------------~-----~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~ 635 (713)
-|..++++++|..|..-|+.++++..+ + ..+--.|..||.+.++.+.|+.+..+.+-++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 366788999999999999999987321 1 1124467889999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005133 636 SVIMSYLGTAMHALKRSGEAIEMMEKA 662 (713)
Q Consensus 636 ~~~~~~la~~~~~~g~~eeAl~~l~ka 662 (713)
..-+...|.|+..+.+|.+|-..+--+
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999887765444
No 379
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.63 E-value=9.7 Score=44.45 Aligned_cols=204 Identities=13% Similarity=-0.011 Sum_probs=98.5
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 005133 472 VGKAYFEVVDYLEAERAFTLARRASPY-SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDH 550 (713)
Q Consensus 472 lg~~~~~~g~~~eA~~~~~kal~~~p~-~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~ 550 (713)
.-..+++...|+-|+...+.-- .+++ -.+.+..+|..++..|++++|...|-+.+..-... . +..-|....+.
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-~----Vi~kfLdaq~I 413 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-E----VIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-H----HHHHhcCHHHH
Confidence 3445566667777776654432 1222 24455666777777777777777766666432111 1 11112333334
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 551 ETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNS--WYGLGMVYLRQEKFEFSEHHFRMA 628 (713)
Q Consensus 551 ~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~--~~~lg~~y~~~g~~~eA~~~l~ka 628 (713)
.+-..+++...+..-....--..|-.+|.++++.++-.+..++ .+.-... .-..-.++.+.+-+++|..+..+.
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 4444455555544333334444556677777776654443333 2210000 111223344444455554444332
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 629 FQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN-PLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 629 l~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
- .+. ..+-.++..+|+|++|+.++... .|.. .......|.++.... .++-...+-+.
T Consensus 490 ~----~he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h~-P~~t~~ili~~ 547 (933)
T KOG2114|consen 490 K----KHE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEHD-PEETMKILIEL 547 (933)
T ss_pred c----cCH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHH
Confidence 1 122 23445667788899998888652 2221 223455666666543 34444443333
No 380
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.39 E-value=3.1 Score=42.94 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 601 ~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
...++..++..+...|+++.++..+++.+..+|.+-.+|..+-..|...|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888888888888888877664
No 381
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.27 E-value=6.8 Score=38.23 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHH
Q 005133 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH----SSVIMSYLGTAMHALKRSGEA 655 (713)
Q Consensus 601 ~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~----~~~~~~~la~~~~~~g~~eeA 655 (713)
+++..+.||..|. ..+.++|+.++.+++++.+. +++++..|+.++.++|+++.|
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444443 23444555555555444322 244555555555555555544
No 382
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.24 E-value=33 Score=35.51 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~ 631 (713)
.++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 445556666777777777777777777777777777777777777777777777777765543
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.78 E-value=6.9 Score=42.69 Aligned_cols=62 Identities=13% Similarity=-0.011 Sum_probs=46.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHH--HH--HHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGW--VL--SQVGKAYFEVVDYLEAERAFTLARRA 495 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~--~~--~~lg~~~~~~g~~~eA~~~~~kal~~ 495 (713)
..+.++..++..++|..|..+|..+...-+.... .+ ...|..+...-++++|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5667788889999999999999998775232222 33 33455566788999999999998876
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=85.62 E-value=3.7 Score=34.88 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=29.5
Q ss_pred HcCChHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 648 ALKRSGEAIEMMEKAILADKK---------NPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 648 ~~g~~eeAl~~l~kal~~~p~---------~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
+.|+|.+|++.+.+....... ...+...+|.++...|++++|+..+++++++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 445555555555554433211 12344566666777777777777777776654
No 385
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=84.54 E-value=31 Score=31.31 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005133 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS 621 (713)
Q Consensus 542 ~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA 621 (713)
..+...+.....+.+++.++..++.+...+..+..+|... +..+.+..++. .....+ .-..+.+..+.+-++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd-~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYD-IEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCC-HHHHHHHHHHcCcHHHH
Confidence 3445556777777777777777666666666676666544 33444444442 111111 11233344455555555
Q ss_pred HHHHHH
Q 005133 622 EHHFRM 627 (713)
Q Consensus 622 ~~~l~k 627 (713)
..++.+
T Consensus 89 ~~l~~k 94 (140)
T smart00299 89 VELYKK 94 (140)
T ss_pred HHHHHh
Confidence 555544
No 386
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.29 E-value=3.2 Score=28.45 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHHCCC
Q 005133 672 PMYQKANILLSLEKFDEALEV--LEELKEYAPR 702 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~--~~kal~l~P~ 702 (713)
.++.+|..+..+|++++|+.. |+-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 445556666666666666666 3355555543
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.21 E-value=8.4 Score=31.48 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=23.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHH
Q 005133 612 YLRQEKFEFSEHHFRMAFQISPHSSV---IMSYLGTAMHALKRSGEAIEMM 659 (713)
Q Consensus 612 y~~~g~~~eA~~~l~kal~~~p~~~~---~~~~la~~~~~~g~~eeAl~~l 659 (713)
++...+.++|+..++++++..++.+. ++-.+..+|...|+|++.+++-
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555444433 2223344445555555554443
No 388
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.89 E-value=9.5 Score=37.22 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=52.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCC
Q 005133 543 CYSLQKDHETALKNFQRAVQL-NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR----HYNSWYGLGMVYLRQEK 617 (713)
Q Consensus 543 ~~~~~g~~~~Al~~~~kal~~-~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~----~~~~~~~lg~~y~~~g~ 617 (713)
.++..-.-++|++.|-++-.. .-+++...+.+|..|. ..+.++|+.++.+++++.+. +++.+..|+.+|..+|+
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 344444445666666654432 2245677777776665 66778888888888876443 47788888888888888
Q ss_pred HHHHH
Q 005133 618 FEFSE 622 (713)
Q Consensus 618 ~~eA~ 622 (713)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 88774
No 389
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.81 E-value=3.6 Score=28.19 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHH--HHHHHHhCCC
Q 005133 467 WVLSQVGKAYFEVVDYLEAERA--FTLARRASPY 498 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~--~~kal~~~p~ 498 (713)
+.++.+|..++.+|++++|++. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4567778888888888888888 4466666654
No 390
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.43 E-value=37 Score=37.57 Aligned_cols=94 Identities=7% Similarity=-0.014 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C--CC---CHHHHHHHHHHH--HHcCChHHHHHHHHHHHHhCCCChhH
Q 005133 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI--S--PH---SSVIMSYLGTAM--HALKRSGEAIEMMEKAILADKKNPLP 672 (713)
Q Consensus 602 ~~~~~~lg~~y~~~g~~~eA~~~l~kal~~--~--p~---~~~~~~~la~~~--~~~g~~eeAl~~l~kal~~~p~~~~~ 672 (713)
..+....+.++...|.+.+|...+-+.... . -. .+.++..+|.++ ........-..-++| ...-
T Consensus 300 ~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK-------~af~ 372 (414)
T PF12739_consen 300 LRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRK-------YAFH 372 (414)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHH-------HHHH
Confidence 345556666777777777766666555443 1 12 233444555555 211000000000000 1112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 673 MYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
+..-|.-|.+.|+...|+.+|.+++.....
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 234467788999999999999999887653
No 391
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=82.87 E-value=68 Score=33.90 Aligned_cols=164 Identities=12% Similarity=0.041 Sum_probs=108.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH----hCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHH--H
Q 005133 504 DIYSTVLYHLKEDMKLSYLAQELIT----TDRL--APQSWCAMGNCYSLQKDHETALKNFQRAVQL-----NPRFAY--G 570 (713)
Q Consensus 504 ~~la~~l~~~g~~~~A~~~~~kal~----~~p~--~~~~~~~la~~~~~~g~~~~Al~~~~kal~~-----~p~~~~--a 570 (713)
..+..+|...+++.+|..+...++. ++.. -.+++..-...|....+..+|...+..|-.. .|.... .
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 4677888999999999887766654 2222 2356677788888888888888887766543 121111 2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHH---HHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCCHHHHHHH
Q 005133 571 HTLCGHEYVALEDFENGIRSYQSALRVDA---RHYNS---WYGLGMVYLRQEKFEFSEHHF--RMAFQISPHSSVIMSYL 642 (713)
Q Consensus 571 ~~~lg~~~~~~g~~eeAl~~~~~al~~~p---~~~~~---~~~lg~~y~~~g~~~eA~~~l--~kal~~~p~~~~~~~~l 642 (713)
-..-|.++....+|.-|..+|-++++-.. ++..+ +-.+-.|-...+..++--..+ ..+++....+.++...+
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 23336666777899999999999987432 22333 333444445566666554444 45667677778888888
Q ss_pred HHHHHHc--CChHHHHHHHHHHHHhCC
Q 005133 643 GTAMHAL--KRSGEAIEMMEKAILADK 667 (713)
Q Consensus 643 a~~~~~~--g~~eeAl~~l~kal~~~p 667 (713)
+.++.+. .+|+.|+..|..-+..+|
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 8887654 578888888887666544
No 392
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.73 E-value=1.8 Score=27.03 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 005133 672 PMYQKANILLSLEKFDEALEVLE 694 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~~~ 694 (713)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
No 393
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.47 E-value=23 Score=36.53 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (713)
Q Consensus 538 ~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a 594 (713)
...+..|...|.+.+|+.+.++++.++|-+...+..+-.++...|+--.|++.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344566666677777777777777777776666777767777777666666666554
No 394
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.87 E-value=1.6 Score=27.34 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHH
Q 005133 467 WVLSQVGKAYFEVVDYLEAERAFT 490 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~~~ 490 (713)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 455677777777777777777664
No 395
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=81.48 E-value=28 Score=31.67 Aligned_cols=32 Identities=19% Similarity=0.082 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCC
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHY 463 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~ 463 (713)
+++.|..|..++-.|..++.+++..+.....+
T Consensus 2 l~kkLmeAK~~ildG~V~qGveii~k~v~Ssn 33 (161)
T PF09205_consen 2 LLKKLMEAKERILDGDVKQGVEIIEKTVNSSN 33 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHcCcCC
Confidence 55677788888889999999999998776554
No 396
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=81.21 E-value=30 Score=35.04 Aligned_cols=42 Identities=14% Similarity=0.049 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARRASPYS-LEGMDIYSTVL 510 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~-~~a~~~la~~l 510 (713)
+..+|+++.+.|+|++.+.++++++..++.- .+-...++.+|
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 4567888888888888888888888887643 33333444443
No 397
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.68 E-value=72 Score=38.44 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHcC
Q 005133 433 LRILGEGYRMSCMYRCKDALDVYLKL 458 (713)
Q Consensus 433 l~~l~~a~~l~~~g~~~eAi~~l~~~ 458 (713)
...+..|..++.+|+|++|...|.++
T Consensus 347 ~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 347 IKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 33444488899999999999999985
No 398
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=80.28 E-value=3.9 Score=43.30 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhCCcc
Q 005133 103 GHYLMGLIYRYTDRRKNAIHHYKMALSIDPLL 134 (713)
Q Consensus 103 ~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~ 134 (713)
-+|+||++|.-..+.++|..++.+|+.++|.+
T Consensus 222 f~YYLG~~~l~~en~heA~~~L~~aFl~c~~l 253 (413)
T COG5600 222 FHYYLGIYYLLNENFHEAFLHLNEAFLQCPWL 253 (413)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHhChhh
Confidence 48999999999999999999999999999988
No 399
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=79.73 E-value=5.7 Score=40.92 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 553 ALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (713)
Q Consensus 553 Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~ 614 (713)
|+.+|.+|+.+.|..+..|..+|.++...|+.-.|+-+|-+++......+.+..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888776654456677777777666
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.67 E-value=30 Score=37.86 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHcCccc--------CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005133 424 TGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHK--------HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARR 494 (713)
Q Consensus 424 ~~~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~ 494 (713)
..+-..+..+..++....+.-.|+|..|++.++.+.-. .+-...+++..|-+|+.+++|.+|++.|..++-
T Consensus 114 ~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 114 SPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred ccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778888888889999999999999876221 223455789999999999999999999999874
No 401
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.61 E-value=3.2 Score=28.86 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005133 467 WVLSQVGKAYFEVVDYLEAERAFTLARRA 495 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~~~kal~~ 495 (713)
.++..+|.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999876
No 402
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.59 E-value=44 Score=34.02 Aligned_cols=78 Identities=9% Similarity=-0.017 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCh
Q 005133 585 ENGIRSYQSALRVDAR------HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKRS 652 (713)
Q Consensus 585 eeAl~~~~~al~~~p~------~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~ 652 (713)
...++++.+|...... .......+|..|+..|+|++|+++|+.+....... ..++..+..|+...|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 3445555555543221 13345678899999999999999999886554332 33566788888888888
Q ss_pred HHHHHHHHHH
Q 005133 653 GEAIEMMEKA 662 (713)
Q Consensus 653 eeAl~~l~ka 662 (713)
+..+.+.-+.
T Consensus 235 ~~~l~~~leL 244 (247)
T PF11817_consen 235 EDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHH
Confidence 8877765443
No 403
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.26 E-value=30 Score=37.73 Aligned_cols=60 Identities=10% Similarity=-0.035 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--HHHH--HHHHHHHccCHHHHHHHHHHHHHh
Q 005133 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAY--GHTL--CGHEYVALEDFENGIRSYQSALRV 597 (713)
Q Consensus 538 ~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~--a~~~--lg~~~~~~g~~eeAl~~~~~al~~ 597 (713)
...+..++..++|..|.+.+..+...-|.... .+.. .|..+...-++++|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566677888888898888888875233222 2333 344455677888888888887764
No 404
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=79.15 E-value=95 Score=38.17 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKA 662 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~ka 662 (713)
..|+.-+..++++-+|-+.....+.. |..+ -.+|.+...|++|+.....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd-~~~a------v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD-PEEA------VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC-HHHH------HHHHhhHhHHHHHHHHHHhc
Confidence 56666777778777777777665532 2211 22333444566666554443
No 405
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=79.07 E-value=11 Score=40.69 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (713)
Q Consensus 537 ~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al 595 (713)
...+..||.++++.+.|+....+.+.++|....-+...|.++..+.+|.+|-+.+--+.
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999887766553
No 406
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=78.18 E-value=7.1 Score=40.24 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 519 LSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA 580 (713)
Q Consensus 519 A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~ 580 (713)
|..+|.+++.+.|.....|..+|.++...|+.-.|+-+|-+++-.....+.+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997765567788888877766
No 407
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=77.67 E-value=27 Score=36.66 Aligned_cols=123 Identities=14% Similarity=-0.050 Sum_probs=84.3
Q ss_pred HHHHHHHHhhccchhhHHHHHhhhhcCC-CchhHHHHHHHHhhcCCHHHHHHHHhc--------C----------C----
Q 005133 6 TDCVQNSLRYFMYRNAIFLCERLCAEFP-SEVNLQLLATCYLQNNQAYAAYNILKG--------T----------Q---- 62 (713)
Q Consensus 6 ~~~i~~~l~~~~~~~A~flaerl~a~~~-~~~~~~llA~~~~~~~~~~~A~~~l~~--------~----------~---- 62 (713)
+.-++..+.++.+...+--+|+.+++.| .-+--++.|+|+-+.| +..+.+.++. . +
T Consensus 103 ~~~~~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFa 181 (301)
T TIGR03362 103 VADYQELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFA 181 (301)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCC
Confidence 3445555667777889999999999976 3677888899999999 5666666553 0 0
Q ss_pred CcchhHH------------------------------HHHHHhhcCChhHHHHhhCCCCCCCccCcchHHHHHHHHHHHH
Q 005133 63 MALSRYL------------------------------FAVACYQMDLLSEAEAALSPVNEPSAEIPNGAAGHYLMGLIYR 112 (713)
Q Consensus 63 ~~~~~~l------------------------------~A~~~~~l~~~~ea~~~L~~~~~~~~~~p~~a~~~~llg~~~~ 112 (713)
+..++-. -|+.|++.+..++|+..|..........-+.-...+++++++.
T Consensus 182 d~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~ 261 (301)
T TIGR03362 182 DDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLE 261 (301)
T ss_pred CHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHH
Confidence 1111111 1677788888999999985211111111122448899999999
Q ss_pred hcCChhHHHHHHHHHhh
Q 005133 113 YTDRRKNAIHHYKMALS 129 (713)
Q Consensus 113 ~~~~~~~A~~~y~~Al~ 129 (713)
..|+.+.|...|.+-.+
T Consensus 262 ~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 262 QAGKAELAQQLYAALDQ 278 (301)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999887554
No 408
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=77.38 E-value=0.74 Score=52.53 Aligned_cols=106 Identities=18% Similarity=0.037 Sum_probs=0.0
Q ss_pred hhHHHHHhhhhcCCCch--hHHHHHHHHhhcCCHHHHHHHHhcCC--------CcchhHHHHHHHhhcCChhHHHHhhCC
Q 005133 20 NAIFLCERLCAEFPSEV--NLQLLATCYLQNNQAYAAYNILKGTQ--------MALSRYLFAVACYQMDLLSEAEAALSP 89 (713)
Q Consensus 20 ~A~flaerl~a~~~~~~--~~~llA~~~~~~~~~~~A~~~l~~~~--------~~~~~~l~A~~~~~l~~~~ea~~~L~~ 89 (713)
.|.++.++.-...+... -.+.-|..|+..|++..|..+|..+. .....++.|++.+..+++++|+..|..
T Consensus 7 aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 7 AAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 34444444333333332 33444899999999999999999872 347888999999999999999999963
Q ss_pred CCCCCccCcch--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005133 90 VNEPSAEIPNG--AAGHYLMGLIYRYTDRRKNAIHHYKMA 127 (713)
Q Consensus 90 ~~~~~~~~p~~--a~~~~llg~~~~~~~~~~~A~~~y~~A 127 (713)
.....+|.. ...+-+++.+|...|+.-+|+..+...
T Consensus 87 --~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 87 --QDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp ----------------------------------------
T ss_pred --CCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 112223333 446778999999999988888877653
No 409
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.12 E-value=8.7 Score=39.44 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005133 607 GLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEK 661 (713)
Q Consensus 607 ~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~k 661 (713)
..+..|...|.+.+|+.+.+++++++|-+...+..+-.++..+|+--.|++.|++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 3344445555555555555555555555555555555555555555555544444
No 410
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.22 E-value=27 Score=35.79 Aligned_cols=161 Identities=12% Similarity=0.039 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCHHH
Q 005133 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSL--------QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL--EDFEN 586 (713)
Q Consensus 517 ~~A~~~~~kal~~~p~~~~~~~~la~~~~~--------~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~--g~~ee 586 (713)
..|++.-..+++.+|....+|...-.+... ..-.+.-+.++..+++.+|..-..|...-.++... ..+..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 456666666677676666666554444332 11234445566666666676666666655555443 44556
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHcCC------
Q 005133 587 GIRSYQSALRVDARHYNSWYGLGMVY------LRQEKFEFSEHHFRMAFQISPHSSVIMSYL---GTAMHALKR------ 651 (713)
Q Consensus 587 Al~~~~~al~~~p~~~~~~~~lg~~y------~~~g~~~eA~~~l~kal~~~p~~~~~~~~l---a~~~~~~g~------ 651 (713)
-+.+.++.++.++.+...|...-.+. ....++..-.++-..++..++-+..+|... -...+..|+
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~ 208 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKY 208 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHH
Confidence 66666666666766666665443333 222233333444445555566666655544 222222332
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHH
Q 005133 652 SGEAIEMMEKAILADKKNPLPMYQKA 677 (713)
Q Consensus 652 ~eeAl~~l~kal~~~p~~~~~~~~la 677 (713)
+++-+++.-.++-.+|++..+|..+-
T Consensus 209 l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 209 LEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred HHHHHHHHHhhhhcCccccchhhHHH
Confidence 33444455555555666666654443
No 411
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=75.83 E-value=62 Score=29.32 Aligned_cols=36 Identities=8% Similarity=-0.051 Sum_probs=19.7
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 005133 511 YHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSL 546 (713)
Q Consensus 511 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 546 (713)
...+....+..+++.++..++.++..+..+..+|..
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 334455556666666665555555555555555543
No 412
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.61 E-value=44 Score=40.83 Aligned_cols=81 Identities=12% Similarity=0.010 Sum_probs=43.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----------hCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 005133 540 MGNCYSLQKDHETALKNFQRAVQ----------LNPRFAYGH---TLCGHEYVALEDFENGIRSYQSALRVDARHYNSWY 606 (713)
Q Consensus 540 la~~~~~~g~~~~Al~~~~kal~----------~~p~~~~a~---~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~ 606 (713)
.|..|...|+.++|++.|+.+.. +.+...... ..|+..+..++++-+|-++....+. +|..
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d~~~----- 1031 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-DPEE----- 1031 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-CHHH-----
Confidence 34556666666776666654421 122222222 4566667777887777777776654 2221
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 005133 607 GLGMVYLRQEKFEFSEHHFRM 627 (713)
Q Consensus 607 ~lg~~y~~~g~~~eA~~~l~k 627 (713)
....|.+...|++|+.....
T Consensus 1032 -av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1032 -AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred -HHHHHhhHhHHHHHHHHHHh
Confidence 12234444566666665544
No 413
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.21 E-value=1.8e+02 Score=34.28 Aligned_cols=210 Identities=8% Similarity=-0.104 Sum_probs=111.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 005133 473 GKAYFEVVDYLEAERAFTLARRASPYSLEG----MDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK 548 (713)
Q Consensus 473 g~~~~~~g~~~eA~~~~~kal~~~p~~~~a----~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 548 (713)
+...+...+.+.|...+.+.........+. +..++.-+...+...++...+..+.... .+...+-....+....+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHcc
Confidence 333445566677777777655544433221 2222222222211445555555443222 12233333333444677
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-H--HH-HHH
Q 005133 549 DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKF-E--FS-EHH 624 (713)
Q Consensus 549 ~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~-~--eA-~~~ 624 (713)
+++.+...+...-..........+.+|..+...|+.++|..+|+++.. +.+ .|-.++... +|.. . .. ...
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~~--Lg~~~~~~~~~~~~ 400 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQR--LGEEYPLKIDKAPK 400 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHHH--cCCCCCCCCCCCCc
Confidence 777766666664333334556677777777777777777777777643 222 222222211 1211 0 00 000
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 625 FRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 625 l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
-...+ +.. -....+..+...|+..+|...+..++.. .++.-...++.+....|.++.|+....++
T Consensus 401 ~~~~~---~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 401 PDSAL---TQG--PEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hhhhh---ccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00011 111 2345677788889999999988887764 34566778888888999988887766543
No 414
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=74.18 E-value=86 Score=30.21 Aligned_cols=183 Identities=12% Similarity=-0.011 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCCHHHH
Q 005133 464 NTGWVLSQVGKAYFE-VVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH-----LKEDMKLSYLAQELITTDRLAPQSW 537 (713)
Q Consensus 464 ~~~~~~~~lg~~~~~-~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~-----~g~~~~A~~~~~kal~~~p~~~~~~ 537 (713)
..++.-..||..+.. +.+|++|.+.|..--..+.. +..-+.++..+.. .++...|++.+..+-+ .+.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y-~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSY-PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 355666667765544 36777777777765544332 3333333332221 1235666666666655 4556777
Q ss_pred HHHHHHHHhc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 005133 538 CAMGNCYSLQ-----K--DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR--HYNSWYGL 608 (713)
Q Consensus 538 ~~la~~~~~~-----g--~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~--~~~~~~~l 608 (713)
..+|.+++.- + +..+|++++.++-.+ .+..+-+.|...|+.-. ++ +....|. .+. ..
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~---~~ 174 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGK--EK-------FKTNAPGEGKPL---DR 174 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccc--hh-------hcccCCCCCCCc---ch
Confidence 7777776642 2 356788888887554 34455555554443321 11 1111221 111 12
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHh
Q 005133 609 GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL----KRSGEAIEMMEKAILA 665 (713)
Q Consensus 609 g~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~----g~~eeAl~~l~kal~~ 665 (713)
+..+.-..+.+.|.++--+|.++ +.+.+..++...|..- ++.++|..+-.+|.++
T Consensus 175 ~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 175 AELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 33444556778888888777776 3556666666665432 2466777777777665
No 415
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.99 E-value=36 Score=39.38 Aligned_cols=117 Identities=19% Similarity=0.189 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH---ccCHHHHHHHHHHHHHhC-CCC
Q 005133 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL------EGMDIYSTVLYH---LKEDMKLSYLAQELITTD-RLA 533 (713)
Q Consensus 464 ~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~------~a~~~la~~l~~---~g~~~~A~~~~~kal~~~-p~~ 533 (713)
-.+++...+-..|....+|+.-+++.+..-.+ |+.. ...+.++-++-+ -|+..+|+...-.+++.. +-.
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 36777788888899999999988888776655 3221 112233333333 356677777766666653 456
Q ss_pred HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 534 PQSWCAMGNCYSL---------QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE 582 (713)
Q Consensus 534 ~~~~~~la~~~~~---------~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g 582 (713)
++.++..|++|.. .+..+.|+++|+++.+..|... .=.+++.++...|
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAG 334 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhh
Confidence 6777777777653 3455678888888888877532 2233444444444
No 416
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=72.97 E-value=4.3 Score=42.72 Aligned_cols=129 Identities=15% Similarity=0.075 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005133 539 AMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKF 618 (713)
Q Consensus 539 ~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~ 618 (713)
..+...+..++++.|..-|.+++..-.... ..+..+... +...+...-.....+++.+-++.+.+
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s------------~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~ 291 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQS------------RDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGR 291 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccc------------ccccccccc---ccccccccccccccchHHhcccccCC
Confidence 457778899999999999988876421100 000000000 01111222233444577777777788
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005133 619 EFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLS 682 (713)
Q Consensus 619 ~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~ 682 (713)
..|+..-..++..++....+++..+..+....++++|++.++.+....|.+..+...+..+-..
T Consensus 292 ~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 292 GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 8887777777777777777888888888888888888888888888888777665555544433
No 417
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=72.70 E-value=18 Score=40.19 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=81.6
Q ss_pred chhhHHHHHhhhhcCCCchhHHHH--HHHHhhcCCHHHHHHHHhcCC-------CcchhHHHHHHHhhcCChhHHHHhhC
Q 005133 18 YRNAIFLCERLCAEFPSEVNLQLL--ATCYLQNNQAYAAYNILKGTQ-------MALSRYLFAVACYQMDLLSEAEAALS 88 (713)
Q Consensus 18 ~~~A~flaerl~a~~~~~~~~~ll--A~~~~~~~~~~~A~~~l~~~~-------~~~~~~l~A~~~~~l~~~~ea~~~L~ 88 (713)
-.++.|+-.++....++..+-++| |..+++.|+..+|..++.... ...-..|.|+..+..+++..|...|.
T Consensus 44 ~a~s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~ 123 (604)
T COG3107 44 NASSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLA 123 (604)
T ss_pred chhHHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHh
Confidence 456778877877777765543333 889999999999999999873 23667889999999999999999996
Q ss_pred CCCCCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcc
Q 005133 89 PVNEPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLL 134 (713)
Q Consensus 89 ~~~~~~~~~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~ 134 (713)
. ....++|..--+.|+.+++-...++ ..+++.-++=+..+|.+
T Consensus 124 ~--~~~~~ls~~Qq~Ry~q~~a~a~ea~-~~~~~a~rari~~~~lL 166 (604)
T COG3107 124 K--LLPADLSQNQQARYYQARADALEAR-GDSIDAARARIAQDPLL 166 (604)
T ss_pred h--cchhhcCHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHhhhhc
Confidence 3 3334455555678888887776665 34555555555555543
No 418
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.31 E-value=59 Score=37.81 Aligned_cols=175 Identities=13% Similarity=0.049 Sum_probs=90.6
Q ss_pred HHHHHHHHcCccc--CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHH---HhCCCCHHHHHHHHHH----------HHHc
Q 005133 449 KDALDVYLKLPHK--HYNTGWVLSQVGKAYFEVVDYLEAERAFTLAR---RASPYSLEGMDIYSTV----------LYHL 513 (713)
Q Consensus 449 ~eAi~~l~~~~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal---~~~p~~~~a~~~la~~----------l~~~ 513 (713)
.+++...+.+.+. .|....+-....++|+.+|+|++|+++.-.+- ..++...-.....+.+ .+..
T Consensus 40 sd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~ 119 (929)
T KOG2062|consen 40 SDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKN 119 (929)
T ss_pred hhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444332 34445565778899999999999999987773 2333221111111111 1111
Q ss_pred cC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCC--CHHHHHHHHHHHHHccCHH
Q 005133 514 KE-----DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAV-QLNPR--FAYGHTLCGHEYVALEDFE 585 (713)
Q Consensus 514 g~-----~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal-~~~p~--~~~a~~~lg~~~~~~g~~e 585 (713)
.. .++...+.++.+...-.+.+.|..+|..+.-. .+..+++++ +.+.. .......+...... +-+
T Consensus 120 ~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~-----rld~ie~Ail~~d~~~~~~~yll~l~~s~v~--~~e 192 (929)
T KOG2062|consen 120 PEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETR-----RLDIIEEAILKSDSVIGNLTYLLELLISLVN--NRE 192 (929)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhh-----hHHHHHHHhccccccchHHHHHHHHHHHHHh--hHH
Confidence 11 45666777788877777777777777765432 233344432 22211 11122222222222 112
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 586 NGIRSYQSALRVD-ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 586 eAl~~~~~al~~~-p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~ 630 (713)
--.+.++..++.. +.-..-++.+..||....+.+.+.+.+++.++
T Consensus 193 fR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 193 FRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred HHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 2222333333321 11112256677888888888888888888776
No 419
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.82 E-value=45 Score=37.83 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~ 614 (713)
+....++..+..+|-.++|++ +.++. .-.+ .+..+.|+++.|.++..++ ++..-|..||.+...
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~-------~s~D~-d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALE-------LSTDP-DQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhhhHHhHhhhccchHhhhh-------cCCCh-hhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhh
Confidence 345556666677776665553 32222 1111 2234667777776655543 455667778888888
Q ss_pred cCCHHHHHHHHHHHHH
Q 005133 615 QEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~ 630 (713)
.+++..|.++|.++..
T Consensus 679 ~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 679 AGELPLASECFLRARD 694 (794)
T ss_pred cccchhHHHHHHhhcc
Confidence 8888888888877654
No 420
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.95 E-value=7.3 Score=28.04 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 674 YQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
+.+|.+|..+|+++.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888885
No 421
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=70.48 E-value=1.3e+02 Score=30.61 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHH
Q 005133 470 SQVGKAYFEVVDYLEAERAFTLARRA-SP--YSLEGMDIYSTVL 510 (713)
Q Consensus 470 ~~lg~~~~~~g~~~eA~~~~~kal~~-~p--~~~~a~~~la~~l 510 (713)
..+|.+.-+.++|++.+.+..++++. +| -..+-...++.+|
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvay 48 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAY 48 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHH
Confidence 45667777777777777777777775 33 3344444444444
No 422
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.80 E-value=27 Score=40.37 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHh-CCCCHH
Q 005133 499 SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRL-----APQSWCAMGNCY---SLQKDHETALKNFQRAVQL-NPRFAY 569 (713)
Q Consensus 499 ~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~-----~~~~~~~la~~~---~~~g~~~~Al~~~~kal~~-~p~~~~ 569 (713)
.++....+...|....+++..+++.+.+-.+-.. ...+.+..+..+ -+-|+-++|+...-.+++. .|-.++
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 3566677777788888888888777665544211 111112222222 2457888898888888776 344566
Q ss_pred HHHHHHHHHHH---------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 005133 570 GHTLCGHEYVA---------LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE-KFEFSEHHF 625 (713)
Q Consensus 570 a~~~lg~~~~~---------~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g-~~~eA~~~l 625 (713)
.+...|.+|.. .+..+.|+.+|+++++..|.. ..-.+++.++...| .|+...++=
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~Fens~Elq 344 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEHFENSLELQ 344 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhhccchHHHH
Confidence 77777777643 456788999999999998873 33445666666666 444444443
No 423
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=69.77 E-value=5.2 Score=42.12 Aligned_cols=121 Identities=20% Similarity=0.253 Sum_probs=88.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 005133 573 LCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRS 652 (713)
Q Consensus 573 ~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 652 (713)
..+......++++.|..-|.++++.-... -+. +-.+... +.......-.....+++.+-.+.+.+
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~-----------s~~-~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~ 291 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQ-----------SRD-REKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGR 291 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhccc-----------ccc-ccccccc---ccccccccccccccchHHhcccccCC
Confidence 35677888999999999999987642210 000 0011111 01111112223455688999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHH
Q 005133 653 GEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 653 eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 708 (713)
..|+.....++..++....+++..+..+....++++|++.++.+....|++..+..
T Consensus 292 ~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 292 GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHH
Confidence 99999988888888889999999999999999999999999999999999876643
No 424
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=69.58 E-value=95 Score=31.38 Aligned_cols=164 Identities=12% Similarity=0.071 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 005133 502 GMDIYSTVLYHLKEDMKLSYLAQELITTDRLA-PQSWCAMGNCYS-LQKDHETALKNFQRAVQLNPRFA-YGHTLCGHEY 578 (713)
Q Consensus 502 a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~-~~~~~~la~~~~-~~g~~~~Al~~~~kal~~~p~~~-~a~~~lg~~~ 578 (713)
-+..++.+..+.+++++...+.++++..++.- .+=...++.+|- ..|....+.+.+........... .....+..-|
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~y 82 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDY 82 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHH
Confidence 35677888888899999999999988886653 233333444442 23444445555544443322210 1111111111
Q ss_pred HHc------cCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc-----C-----CHHHHHHHHHHHHHh-----CC
Q 005133 579 VAL------EDFENGIRSYQSALRVDARHYN----SWYGLGMVYLRQ-----E-----KFEFSEHHFRMAFQI-----SP 633 (713)
Q Consensus 579 ~~~------g~~eeAl~~~~~al~~~p~~~~----~~~~lg~~y~~~-----g-----~~~eA~~~l~kal~~-----~p 633 (713)
... .--.+.+...+..+--...+.. .+...|..|... | -.++|...|++|+.+ .|
T Consensus 83 k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~ 162 (236)
T PF00244_consen 83 KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPP 162 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCC
Confidence 100 0011222222221111111211 122234333221 1 235677777777653 56
Q ss_pred CCHH---HHHHHHHHHH-HcCChHHHHHHHHHHHHh
Q 005133 634 HSSV---IMSYLGTAMH-ALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 634 ~~~~---~~~~la~~~~-~~g~~eeAl~~l~kal~~ 665 (713)
.+|. +..+.+..|+ .+|+.++|++..++++..
T Consensus 163 ~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 163 THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6654 3344455443 478888888888777653
No 425
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=69.15 E-value=7.4 Score=42.40 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=47.0
Q ss_pred HHHHHhhcCChhHHHHhhCCC----CCCCccCcch-HHHHHHHHHHHHhcCChhHHHHHHHHHhhh
Q 005133 70 FAVACYQMDLLSEAEAALSPV----NEPSAEIPNG-AAGHYLMGLIYRYTDRRKNAIHHYKMALSI 130 (713)
Q Consensus 70 ~A~~~~~l~~~~ea~~~L~~~----~~~~~~~p~~-a~~~~llg~~~~~~~~~~~A~~~y~~Al~~ 130 (713)
+.|.++=+|+|..|+.+|+.. ..+...+|.. -+.+|.+|-+|.-++|...|+.+|...|-.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666889999999999754 1233445433 448999999999999999999999888753
No 426
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.21 E-value=1.5e+02 Score=30.56 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHH
Q 005133 484 EAERAFTLARRASPYSLEGMDIYSTVLYHL--KEDMKLSYLAQELITTDRLAPQSW 537 (713)
Q Consensus 484 eA~~~~~kal~~~p~~~~a~~~la~~l~~~--g~~~~A~~~~~kal~~~p~~~~~~ 537 (713)
.-++++..+++.+|.+-..|...-.++... ..+..-..+.+++++.++.+...|
T Consensus 92 neld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W 147 (328)
T COG5536 92 NELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVW 147 (328)
T ss_pred cHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccccccccee
Confidence 334444444444444444444443333332 233333344444444444444443
No 427
>PF13041 PPR_2: PPR repeat family
Probab=67.52 E-value=23 Score=25.77 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 604 SWYGLGMVYLRQEKFEFSEHHFRMAF 629 (713)
Q Consensus 604 ~~~~lg~~y~~~g~~~eA~~~l~kal 629 (713)
.|..+-..|.+.|++++|.++|++..
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 428
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=67.51 E-value=1.7 Score=39.98 Aligned_cols=81 Identities=17% Similarity=0.052 Sum_probs=59.0
Q ss_pred HHHHHHhhccchhhHHHHHhhhhcCCC--chhHHHHHHHHhhcCCHHHHHHHHhcCCCcchhHHHHHHHhhcCChhHHHH
Q 005133 8 CVQNSLRYFMYRNAIFLCERLCAEFPS--EVNLQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSEAEA 85 (713)
Q Consensus 8 ~i~~~l~~~~~~~A~flaerl~a~~~~--~~~~~llA~~~~~~~~~~~A~~~l~~~~~~~~~~l~A~~~~~l~~~~ea~~ 85 (713)
+|..+.+.+....++.+.|.+....+. ....-.|+.+|...+++.+...+++....-....++.. |.+.+.+++|..
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~-c~~~~l~~~a~~ 91 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRL-CEKHGLYEEAVY 91 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHH-HHTTTSHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHH-HHhcchHHHHHH
Confidence 456666778888888888888877654 33557889999999888999999997766555555444 477778888887
Q ss_pred hhCC
Q 005133 86 ALSP 89 (713)
Q Consensus 86 ~L~~ 89 (713)
++.+
T Consensus 92 Ly~~ 95 (143)
T PF00637_consen 92 LYSK 95 (143)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7754
No 429
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.47 E-value=1.5e+02 Score=32.28 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHH
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDAR---HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP--------HSSV 637 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~---~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p--------~~~~ 637 (713)
.++..+|..|...|+++.|++.|-++-..... ....+.++..+-...|+|..-..+..+|...-. -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 45666777777778888887777775544332 244566666777777777776666666654310 0123
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 005133 638 IMSYLGTAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 638 ~~~~la~~~~~~g~~eeAl~~l~kal 663 (713)
+.+.-|.+...+++|..|.++|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55566777777778888887775543
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=67.45 E-value=1.7e+02 Score=30.96 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNP------RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNS 604 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p------~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~~~ 604 (713)
.+++...|..|.+.|+-+.|++.+.+..+..- +-......+|.+|....-..+.++..+..++...+- -..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 36777777778888888877777776654421 112234456666655544444444444444433221 111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 605 WYGLGMVYLRQEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 605 ~~~lg~~y~~~g~~~eA~~~l~kal~ 630 (713)
-..-|.......++.+|..+|-.++.
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 22234444455577777777766554
No 431
>PRK12798 chemotaxis protein; Reviewed
Probab=67.32 E-value=2e+02 Score=31.54 Aligned_cols=204 Identities=13% Similarity=0.012 Sum_probs=110.4
Q ss_pred HHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005133 491 LARRASPY-SLEGMDIYSTVLYHLKEDMKLSYLAQELITTD-RLAPQSWCAM-GNCYSLQKDHETALKNFQRAVQLNPRF 567 (713)
Q Consensus 491 kal~~~p~-~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~-p~~~~~~~~l-a~~~~~~g~~~~Al~~~~kal~~~p~~ 567 (713)
.++..++. +.+.-...+..-+-.|+..++...+....... |...-.+..+ .-......+..+|+++|+.+--..|..
T Consensus 102 ~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGT 181 (421)
T PRK12798 102 KLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGT 181 (421)
T ss_pred HHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCch
Confidence 33444432 34444555566666777777766554432221 1112223222 233445567788888888877777764
Q ss_pred H---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC-HHHH
Q 005133 568 A---YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNS---WYGLGMVYLRQEKFEFSEHHFRMAFQI-SPHS-SVIM 639 (713)
Q Consensus 568 ~---~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~---~~~lg~~y~~~g~~~eA~~~l~kal~~-~p~~-~~~~ 639 (713)
. .++..-..+....|+.+++..+-.+.++.....+.+ +-.++..+.+.++-..- ..+...+.. +|.. ..+|
T Consensus 182 LvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lY 260 (421)
T PRK12798 182 LVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELY 260 (421)
T ss_pred HHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHH
Confidence 2 233333344567777777777777777766554433 33333344444322211 224444443 3322 3467
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 005133 640 SYLGTAMHALKRSGEAIEMMEKAILADKK----NPLPMYQKANILLSLEKFDEALEVLEE 695 (713)
Q Consensus 640 ~~la~~~~~~g~~eeAl~~l~kal~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~k 695 (713)
..++..-.-.|+.+-|...-++++.+... ...+.+..+....-..++++|++.+..
T Consensus 261 L~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 261 LRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQ 320 (421)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhc
Confidence 77777777778888888888887777432 233444444444455566666665554
No 432
>PF12854 PPR_1: PPR repeat
Probab=66.39 E-value=12 Score=25.01 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005133 602 YNSWYGLGMVYLRQEKFEFSEHHFRM 627 (713)
Q Consensus 602 ~~~~~~lg~~y~~~g~~~eA~~~l~k 627 (713)
...|..+...|.+.|+.++|+++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45566666666666666666666654
No 433
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.03 E-value=2.5e+02 Score=32.99 Aligned_cols=185 Identities=13% Similarity=0.065 Sum_probs=101.1
Q ss_pred HHccCCHHHHHHHHHcCcccC------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcc
Q 005133 442 MSCMYRCKDALDVYLKLPHKH------YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGM-DIYSTVLYHLK 514 (713)
Q Consensus 442 l~~~g~~~eAi~~l~~~~~~~------~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~-~~la~~l~~~g 514 (713)
.+..|+..+|.+++.--+... ...+-+++.+|.++...|+- ..+++...++........+ ..+|.-+..+|
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mG 444 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMG 444 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcc
Confidence 356789999999998765442 23566888888888777665 8888888887765432222 22333344454
Q ss_pred CHHH-HHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 005133 515 EDMK-LSYLAQELITTDRLAP--QSWCAMGNCYSLQKDHETALK-NFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRS 590 (713)
Q Consensus 515 ~~~~-A~~~~~kal~~~p~~~--~~~~~la~~~~~~g~~~~Al~-~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~ 590 (713)
...+ ..+.++..+..+..-. .+-+.+|.+....... +|++ .+.-+.+..-+...-=...|..+..-|+-++|..+
T Consensus 445 Sa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~-eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~l 523 (929)
T KOG2062|consen 445 SANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ-EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPL 523 (929)
T ss_pred cccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH-HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHH
Confidence 4222 2222333333332211 2344555555544443 3333 33333322211122223456667777888888888
Q ss_pred HHHHHHhC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 591 YQSALRVD-AR-HYNSWYGLGMVYLRQEKFEFSEHHFRMAF 629 (713)
Q Consensus 591 ~~~al~~~-p~-~~~~~~~lg~~y~~~g~~~eA~~~l~kal 629 (713)
.++++.-. |- .....+.+|..|...|+..--.+++--++
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aV 564 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAV 564 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccc
Confidence 88877643 11 12345667777877777654444444333
No 434
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.86 E-value=12 Score=26.99 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAF 629 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal 629 (713)
+.+|.+|+..|+.+.|.+.+++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555566666655555555
No 435
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.73 E-value=63 Score=36.72 Aligned_cols=48 Identities=10% Similarity=-0.273 Sum_probs=28.9
Q ss_pred HHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 476 YFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELIT 528 (713)
Q Consensus 476 ~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~ 528 (713)
..+.|+++.|.++..++ ++..-|..||.+....+++..|.+++.++..
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 34556666666554443 3445566667766677777666666666543
No 436
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=65.68 E-value=22 Score=35.71 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=31.9
Q ss_pred ccCcch--HHHHHHHHHHHH---------hcCChhHHHHHHHHHhhhCCcc
Q 005133 95 AEIPNG--AAGHYLMGLIYR---------YTDRRKNAIHHYKMALSIDPLL 134 (713)
Q Consensus 95 ~~~p~~--a~~~~llg~~~~---------~~~~~~~A~~~y~~Al~~~p~~ 134 (713)
.++|+. |-.|-++|..+. ..++...|..++++|+.+||.+
T Consensus 161 ~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 161 WDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 467877 557888898773 4567889999999999999854
No 437
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=65.14 E-value=1.7e+02 Score=29.99 Aligned_cols=206 Identities=11% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHccC
Q 005133 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGM-DIYSTVLYHLKE 515 (713)
Q Consensus 437 ~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~-~~la~~l~~~g~ 515 (713)
+.+-..+.+-+..+|+..+...+......+.+....|.++-..| ..+...++.+.. .+|.-...- ..++.-...-++
T Consensus 54 he~ay~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 54 HELAYVLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPESLEILTKYI-KDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred cchhhhhhhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chhhHHHHHHHh-cCCccccchHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (713)
Q Consensus 516 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al 595 (713)
.-.....-......+|.-+.....+..+-... ++...+..+...+..+.+.-.-++|+..+-+.+
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~l---------------ld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l 196 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAEL---------------LDETKPLFERYRAMFYLRNIGTEEAINALIDGL 196 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHH---------------HhcchhHHHHHhhhhHhhccCcHHHHHHHHHhc
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005133 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal 663 (713)
..+ ..-.....|.++-++ +-..|+..+.+.+.....++.+...-+.++...++ ++++..+++.+
T Consensus 197 ~~~--SalfrhEvAfVfGQl-~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-e~~~~vL~e~~ 260 (289)
T KOG0567|consen 197 ADD--SALFRHEVAFVFGQL-QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-EDCVEVLKEYL 260 (289)
T ss_pred ccc--hHHHHHHHHHHHhhc-cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-HHHHHHHHHHc
No 438
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=65.09 E-value=85 Score=34.07 Aligned_cols=57 Identities=11% Similarity=-0.115 Sum_probs=41.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCC-----CHHHH--HHHHHHHHHhhcHHHHHHHHHH
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYN-----TGWVL--SQVGKAYFEVVDYLEAERAFTL 491 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~-----~~~~~--~~lg~~~~~~g~~~eA~~~~~k 491 (713)
....+..++..++|..|..+|.++....+. ....+ ...|..++..-++++|.+++++
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345666789999999999999998776431 12233 3444555667899999999986
No 439
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.70 E-value=18 Score=22.97 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhCCCCHHH
Q 005133 620 FSEHHFRMAFQISPHSSVI 638 (713)
Q Consensus 620 eA~~~l~kal~~~p~~~~~ 638 (713)
.|...|++++...|.++.+
T Consensus 5 ~~r~i~e~~l~~~~~~~~~ 23 (33)
T smart00386 5 RARKIYERALEKFPKSVEL 23 (33)
T ss_pred HHHHHHHHHHHHCCCChHH
Confidence 3333333333333333333
No 440
>PF13041 PPR_2: PPR repeat family
Probab=64.51 E-value=30 Score=25.09 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALR 596 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~ 596 (713)
..|..+-..|.+.|++++|.++|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444455555555555555555555554
No 441
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.24 E-value=16 Score=23.25 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 481 DYLEAERAFTLARRASPYSLEGMDIYS 507 (713)
Q Consensus 481 ~~~eA~~~~~kal~~~p~~~~a~~~la 507 (713)
+++.|...|++++...|.....|..++
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555554443
No 442
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.78 E-value=36 Score=33.74 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=56.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005133 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV 637 (713)
Q Consensus 575 g~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~ 637 (713)
...+.+.+...+|+...+.-++..|.+......+-.+|.-.|+|++|...++-+-++.|++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 345678889999999999999999999999999999999999999999999999999888643
No 443
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=63.39 E-value=58 Score=38.06 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=16.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCh
Q 005133 677 ANILLSLEKFDEALEVLEELKEYAPRES 704 (713)
Q Consensus 677 a~~~~~~g~~~eA~~~~~kal~l~P~~~ 704 (713)
..-++..|++++|++.+++.- +-|.+.
T Consensus 512 ff~~~~~g~~~~AL~~i~~L~-liP~~~ 538 (613)
T PF04097_consen 512 FFDLYHAGQYEQALDIIEKLD-LIPLDP 538 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT--S-S-H
T ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCCCH
Confidence 344678999999998887643 556443
No 444
>PF12854 PPR_1: PPR repeat
Probab=63.36 E-value=13 Score=24.91 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=14.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 005133 669 NPLPMYQKANILLSLEKFDEALEVLEE 695 (713)
Q Consensus 669 ~~~~~~~la~~~~~~g~~~eA~~~~~k 695 (713)
+...|..+...|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344455555555555555555555544
No 445
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.52 E-value=49 Score=32.84 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=55.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 005133 541 GNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH 601 (713)
Q Consensus 541 a~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~ 601 (713)
..-+.+.+...+|+...+.-++-.|.+......+-.+|.-.|+|++|..-++-+-++.|.+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3456778899999999999999999999999999999999999999999999999999875
No 446
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.88 E-value=3.1e+02 Score=38.20 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 670 PLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 670 ~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
.+.+...|..+.++|+.++|-..|..|++++-.-+.+|...|.
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~ 2854 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGK 2854 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4456678888999999999999999999988887888877663
No 447
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.32 E-value=1.4e+02 Score=32.55 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----C----CChh
Q 005133 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILAD----K----KNPL 671 (713)
Q Consensus 603 ~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~~~~~~g~~eeAl~~l~kal~~~----p----~~~~ 671 (713)
.++..+|.-|...|+++.|++.|-++-...... ...+.++-.+-..+|+|..-..+..+|...- . -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 467889999999999999999999976554333 3466777788888999988887777776541 0 0233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 672 PMYQKANILLSLEKFDEALEVLEELK 697 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~~~kal 697 (713)
+....|.+...+++|+.|..+|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45666777778889999998886653
No 448
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.98 E-value=2.7e+02 Score=34.43 Aligned_cols=210 Identities=14% Similarity=0.014 Sum_probs=108.7
Q ss_pred HHHHHccCCHHHHHHHHHcCccc-CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------
Q 005133 439 GYRMSCMYRCKDALDVYLKLPHK-HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY------ 511 (713)
Q Consensus 439 a~~l~~~g~~~eAi~~l~~~~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~------ 511 (713)
+..++.+.+|+.-.+++.-...- .-..+...+.+|.+|...|+..+|+.+|.++..-..... ++..+..-+.
T Consensus 892 pe~lfg~cqy~~lqdy~~llh~wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv 970 (1480)
T KOG4521|consen 892 PERLFGQCQYKVLQDYLNLLHSWCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSV 970 (1480)
T ss_pred hhhhhcchhHHHHHHHHHHhhhhhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCch
Confidence 34445555666666655543221 123556778899999999999999999999876533221 2222211110
Q ss_pred HccC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccC
Q 005133 512 HLKE----DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF----AYGHTLCGHEYVALED 583 (713)
Q Consensus 512 ~~g~----~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~----~~a~~~lg~~~~~~g~ 583 (713)
..|+ ...+..+ |...-+++..-+-.+.+.++..+|++.-|++ +..+..+-..+..+|.
T Consensus 971 ~dG~t~s~e~t~lhY--------------Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh 1036 (1480)
T KOG4521|consen 971 ADGKTPSEELTALHY--------------YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGH 1036 (1480)
T ss_pred hcCCCCCchHHHHHH--------------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhh
Confidence 1111 0111222 2233445556667777777777777664332 2333334444556666
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHH------------HHH-HHHHHHHhCCCC-HHHHHHHHHHH
Q 005133 584 FENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEF------------SEH-HFRMAFQISPHS-SVIMSYLGTAM 646 (713)
Q Consensus 584 ~eeAl~~~~~al~~~p~~---~~~~~~lg~~y~~~g~~~e------------A~~-~l~kal~~~p~~-~~~~~~la~~~ 646 (713)
+-+|...+- .+|+. -..+..+..++++.|+++. -.. +++.+-+..|-. ...|..|-..+
T Consensus 1037 ~~qAy~ai~----~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh 1112 (1480)
T KOG4521|consen 1037 WFQAYKAIL----RNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFH 1112 (1480)
T ss_pred HHHHHHHHH----cCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHH
Confidence 666654332 34442 2345566666666666542 222 333333333322 22344444455
Q ss_pred HHcCChHHHH-HHHHHHHHhCC
Q 005133 647 HALKRSGEAI-EMMEKAILADK 667 (713)
Q Consensus 647 ~~~g~~eeAl-~~l~kal~~~p 667 (713)
...+++.+|- -+|+.+..+..
T Consensus 1113 ~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1113 VARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred HhhcchhHHHHHHHHHHHHhcc
Confidence 5667776653 45666666543
No 449
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.39 E-value=35 Score=31.52 Aligned_cols=49 Identities=18% Similarity=0.064 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 005133 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~ 515 (713)
......+...+..|+|.-|.++...++..+|++.++....+.++..+|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3444556666666777777777777777777777766666666665554
No 450
>PF06287 DUF1039: Protein of unknown function (DUF1039); InterPro: IPR010437 This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic Escherichia coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterised as part of the apparatus or as an effector protein.
Probab=57.12 E-value=25 Score=27.67 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=43.2
Q ss_pred HhhccchhhHHHHHhhhhcCCCchh-HHHHHHHHhhcCCHHHHHHHHhcCCCcchhHH
Q 005133 13 LRYFMYRNAIFLCERLCAEFPSEVN-LQLLATCYLQNNQAYAAYNILKGTQMALSRYL 69 (713)
Q Consensus 13 l~~~~~~~A~flaerl~a~~~~~~~-~~llA~~~~~~~~~~~A~~~l~~~~~~~~~~l 69 (713)
.+++++..|.-+-.-|=...|+++. ..--|.+||..|+..+|...|+..+++.|.-|
T Consensus 4 vNHgL~~ea~aIL~alP~Li~D~~~r~~c~alllfGL~~~~~Al~~L~~~~~eeA~~L 61 (66)
T PF06287_consen 4 VNHGLLKEARAILNALPQLIPDEEDRAVCEALLLFGLGEQAAALQLLADSDSEEAQAL 61 (66)
T ss_pred cccccHHHHHHHHHhchhhcCCHhHHHHHHHHHHHHcCChHHHHHHHhCCChHHHHHH
Confidence 3567777777777777677777664 45568999999999999999998877766544
No 451
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.28 E-value=63 Score=38.29 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHcCc
Q 005133 429 LLGLLRILGEGYRMSCMYRCKDALDVYLKLP 459 (713)
Q Consensus 429 l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~ 459 (713)
+-.+...+.+||.+...|++.+|++.|..++
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii 1018 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSII 1018 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 4446678999999999999999999999874
No 452
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=55.66 E-value=3e+02 Score=29.73 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=41.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005133 582 EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRM 627 (713)
Q Consensus 582 g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~k 627 (713)
...-+|+.+++.++...|.++.....+..+|...|-.+.|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3466889999999999999999999999999999999999999865
No 453
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=55.62 E-value=2.1e+02 Score=31.09 Aligned_cols=54 Identities=6% Similarity=-0.212 Sum_probs=31.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHH--HHHHHHccCHHHHHHHHHH
Q 005133 540 MGNCYSLQKDHETALKNFQRAVQLNPRF-----AYGHTLC--GHEYVALEDFENGIRSYQS 593 (713)
Q Consensus 540 la~~~~~~g~~~~Al~~~~kal~~~p~~-----~~a~~~l--g~~~~~~g~~eeAl~~~~~ 593 (713)
.+..++..++|..|...|+.+....+.. ...+..+ |..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4446677777777777777777654311 1222333 3334455667777777764
No 454
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=55.59 E-value=20 Score=29.16 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcchHHHHHHHhcCCccchhHHHHH
Q 005133 100 GAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCMLGAAEEATAVFSE 156 (713)
Q Consensus 100 ~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~~~a~~~L~~~~~~~~~~~~f~~ 156 (713)
.|..+...+--+.+.|+..+|+.||++|+.+ +..++..-.+.....+|..
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~-------L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV-------LSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------HHHHHHhCCChHHHHHHHH
Confidence 4667788899999999999999999999765 5666665444444556653
No 455
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.72 E-value=2.2e+02 Score=29.64 Aligned_cols=131 Identities=7% Similarity=-0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHH
Q 005133 448 CKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP------YSLEGMDIYSTVLYHLKEDMKLSY 521 (713)
Q Consensus 448 ~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p------~~~~a~~~la~~l~~~g~~~~A~~ 521 (713)
++++++-.+..- ....-.+++..+|..|.+.++.+.+.+++.+.++..- +-.-....+|.++....-.++.++
T Consensus 98 lde~i~~~eedn-gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE 176 (412)
T COG5187 98 LDERIREKEEDN-GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLE 176 (412)
T ss_pred HHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHH
Q ss_pred HHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 522 LAQELITTDRLAP---QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYV 579 (713)
Q Consensus 522 ~~~kal~~~p~~~---~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~ 579 (713)
.....++...+-. ..-...|...+...++.+|...+...+.........-+.-+.-|.
T Consensus 177 ~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa 237 (412)
T COG5187 177 VADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYA 237 (412)
T ss_pred HHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHH
No 456
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.64 E-value=1.3e+02 Score=34.03 Aligned_cols=157 Identities=10% Similarity=-0.008 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHh---CC--CC--------HHHHHHHHHHHHHccC----HHHHHHHHHHHHHhC
Q 005133 468 VLSQVGKAYFEVVDYLEAERAFTLARRA---SP--YS--------LEGMDIYSTVLYHLKE----DMKLSYLAQELITTD 530 (713)
Q Consensus 468 ~~~~lg~~~~~~g~~~eA~~~~~kal~~---~p--~~--------~~a~~~la~~l~~~g~----~~~A~~~~~kal~~~ 530 (713)
+-..+.++|+.+|+|++|+++.-.+-.. +. .. .+.+...+.-.+..++ ....-..++...+.+
T Consensus 61 aaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~~~~d~iD~~l~~v~e~i~~kc 140 (926)
T COG5116 61 AALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIGGDKDIIDRILDFVLEVIGAKC 140 (926)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhCCCcccchHHHHHHHHHHHHHH
Confidence 6677889999999999999987665331 11 11 1222222333333333 222333344444444
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHH
Q 005133 531 RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA--YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYN-SWYG 607 (713)
Q Consensus 531 p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~--~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~-~~~~ 607 (713)
-++.+.-+.+|...... . +...++++.-..+.. .....++........+. .++++..++..|..+. -|+.
T Consensus 141 ~~~se~~~~lgIa~eg~--r---ldiie~~l~~~~d~di~~ylL~Lait~v~~~~fr--~~ilr~l~~~~~~~~~pdyf~ 213 (926)
T COG5116 141 VDDSEIGYLLGIAAEGL--R---LDIIEKYLSDGNDCDIINYLLDLAITLVEEEGFR--KEILRMLAEIGPGKPKPDYFY 213 (926)
T ss_pred hhHHHHHHHHHHHHHHH--H---HHHHHHHHhCCCcccHHHHHHHHHHHHhhhHHHH--HHHHHHHHHhcCCCCCCcEEE
Confidence 34444444444332211 1 222333333322211 12223333333222222 2345555555555422 3455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 005133 608 LGMVYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 608 lg~~y~~~g~~~eA~~~l~kal~~ 631 (713)
++.++...++-+.|.+++++..+.
T Consensus 214 v~k~vv~LnDa~~a~~L~~kL~~e 237 (926)
T COG5116 214 VIKAVVYLNDAEKAKALIEKLVKE 237 (926)
T ss_pred EeEEEEEeccHHHHHHHHHHHHhh
Confidence 666677777777777777776654
No 457
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.59 E-value=41 Score=32.64 Aligned_cols=44 Identities=23% Similarity=0.192 Sum_probs=22.5
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 005133 657 EMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 657 ~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P 701 (713)
+..++.+...| ++.++..++.++...|+.++|....+++..+.|
T Consensus 132 ~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33344444444 445555555555555555555555555555555
No 458
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=54.29 E-value=2.9e+02 Score=29.18 Aligned_cols=184 Identities=11% Similarity=0.014 Sum_probs=96.4
Q ss_pred HHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--CC--CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 005133 450 DALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRAS--PY--SLEGMDIYSTVLYHLKEDMKLSYLAQE 525 (713)
Q Consensus 450 eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~--p~--~~~a~~~la~~l~~~g~~~~A~~~~~k 525 (713)
.-++.+.+-..-.|+...+++..++..++.|+|..|-.++-...... |+ +..++...-..-.-..+++.|.+-+.+
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~r 192 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTR 192 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444555455567788899999999999999999988766555443 32 233333333333445677878777666
Q ss_pred HHHh---CCCCH-------HHHHHHHH--HHHh-cCCHHHHHHHH------HHHHHhCCCCHHHHHHHHHHHHHc-cCHH
Q 005133 526 LITT---DRLAP-------QSWCAMGN--CYSL-QKDHETALKNF------QRAVQLNPRFAYGHTLCGHEYVAL-EDFE 585 (713)
Q Consensus 526 al~~---~p~~~-------~~~~~la~--~~~~-~g~~~~Al~~~------~kal~~~p~~~~a~~~lg~~~~~~-g~~e 585 (713)
+-+. .+-.. .+|..-=. .++. -+--+.-++.| -.+++. ..+..+..++....-. .+..
T Consensus 193 Lre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt--~cPhllRYLatAvvtnk~~rr 270 (432)
T KOG2758|consen 193 LREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT--SCPHLLRYLATAVVTNKRRRR 270 (432)
T ss_pred HHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh--hCHHHHHHHHHHhhcchHhhH
Confidence 5543 22111 12211100 1111 11112222221 122221 2344444455444433 5666
Q ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005133 586 NGIRSYQSALRVDARH-YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (713)
Q Consensus 586 eAl~~~~~al~~~p~~-~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~ 635 (713)
.+++-+-++++..... .+.....-.|++-.=++++|...+.++-+.-.++
T Consensus 271 ~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nD 321 (432)
T KOG2758|consen 271 NRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVND 321 (432)
T ss_pred HHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcc
Confidence 7777777777653321 1122334445555668888888887776654444
No 459
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=54.03 E-value=19 Score=22.64 Aligned_cols=23 Identities=22% Similarity=0.145 Sum_probs=10.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMA 628 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~ka 628 (713)
..+-..|.+.|++++|.+.|++.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHH
Confidence 33444444444444444444443
No 460
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.84 E-value=3e+02 Score=29.28 Aligned_cols=106 Identities=15% Similarity=0.012 Sum_probs=57.0
Q ss_pred HccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccC
Q 005133 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS-------LEGMDIYSTVLYHLKE 515 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~-------~~a~~~la~~l~~~g~ 515 (713)
...+.|+++.+...+-. +....-...|.+++..++|.+....|..+-+..... +.+-...|..+.
T Consensus 39 ~~~~~y~Q~~q~~kk~~----~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~v---- 110 (449)
T COG3014 39 SPKKAYEQSKQFTKKKK----NALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMI---- 110 (449)
T ss_pred cchhHHHHHHHhhhhhh----HHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhh----
Confidence 34456666666554321 111222456888888899888887777664432211 111111111111
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005133 516 DMKLSYLAQELITTDRLA---PQSWCAMGNCYSLQKDHETALKNFQRAVQL 563 (713)
Q Consensus 516 ~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~Al~~~~kal~~ 563 (713)
=+.+.+.+|.. ..+.+.+|.-|+..++++.|+--|.++...
T Consensus 111 -------NDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 111 -------NDNVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred -------ccchhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 11111222222 234566788888888999888888887654
No 461
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.09 E-value=1.7e+02 Score=26.26 Aligned_cols=43 Identities=2% Similarity=0.099 Sum_probs=19.8
Q ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 586 NGIRSYQSALR--VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMA 628 (713)
Q Consensus 586 eAl~~~~~al~--~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~ka 628 (713)
.+..+|..+.. +.-..+..|...|..+...|++++|.+.|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 44444444333 23334445555555555555555555555444
No 462
>PRK09687 putative lyase; Provisional
Probab=52.85 E-value=2.9e+02 Score=28.72 Aligned_cols=219 Identities=11% Similarity=-0.051 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH----HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED----MKLSYLAQELITTDRLAPQSWCAMGN 542 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~----~~A~~~~~kal~~~p~~~~~~~~la~ 542 (713)
.+.......+...|. .++...+.+++. ..+.......+.++.++|.. .++...+..++..+++ +.+....+.
T Consensus 38 ~vR~~A~~aL~~~~~-~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d-~~VR~~A~~ 113 (280)
T PRK09687 38 LKRISSIRVLQLRGG-QDVFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKS-ACVRASAIN 113 (280)
T ss_pred HHHHHHHHHHHhcCc-chHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence 344444444444443 334444444322 23455555666666667653 3455555555444443 333332222
Q ss_pred HHHhcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Q 005133 543 CYSLQKD-----HETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE- 616 (713)
Q Consensus 543 ~~~~~g~-----~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g- 616 (713)
.+-..+. ...++..+..++. ++ +..+....+..+...++ ++|+..+..++. ++ ++.+...-+..+...+
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~-D~-~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-d~-~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAF-DK-STNVRFAVAFALSVIND-EAAIPLLINLLK-DP-NGDVRNWAAFALNSNKY 188 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhh-CC-CHHHHHHHHHHHhccCC-HHHHHHHHHHhc-CC-CHHHHHHHHHHHhcCCC
Confidence 2222221 1233333333322 22 45555555555555554 567888877776 22 3344443333333332
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 617 KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 617 ~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
....+...+.+++. ..+..+....+..+.+.|. ..|+..+-+.++... .....+.++-..|.. +|+..+.++
T Consensus 189 ~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 189 DNPDIREAFVAMLQ--DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred CCHHHHHHHHHHhc--CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 34567777777773 3355566666666666666 577887777766422 455666777777774 688888888
Q ss_pred HHHCCC
Q 005133 697 KEYAPR 702 (713)
Q Consensus 697 l~l~P~ 702 (713)
+..+|+
T Consensus 261 ~~~~~d 266 (280)
T PRK09687 261 LYKFDD 266 (280)
T ss_pred HhhCCC
Confidence 887774
No 463
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=52.48 E-value=2.7e+02 Score=34.34 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=18.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHcC
Q 005133 436 LGEGYRMSCMYRCKDALDVYLKL 458 (713)
Q Consensus 436 l~~a~~l~~~g~~~eAi~~l~~~ 458 (713)
|.....++..++|.+|..++++-
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHHHh
Confidence 34445667899999999999974
No 464
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=52.20 E-value=41 Score=31.06 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (713)
Q Consensus 602 ~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 650 (713)
.+.....+...+..|++.-|.++...++..+|++..+....+.++..+|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555444443
No 465
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=51.83 E-value=3.1e+02 Score=28.84 Aligned_cols=37 Identities=3% Similarity=-0.162 Sum_probs=20.1
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 005133 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK 548 (713)
Q Consensus 512 ~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 548 (713)
..+++.+.+..+++.+...|--.+..+..+.++.+.|
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG 147 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC
Confidence 3344455555555555555555555555555555555
No 466
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=51.49 E-value=1.3e+02 Score=24.43 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=11.1
Q ss_pred HHHHHHHHHccCCHHHHHHHH
Q 005133 435 ILGEGYRMSCMYRCKDALDVY 455 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l 455 (713)
.+.+|..+-..|++.+|+.+|
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y 29 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNY 29 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 344555555555555555544
No 467
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=51.15 E-value=21 Score=22.43 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARR 494 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~ 494 (713)
|..+-.+|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45566677777777777777777654
No 468
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.03 E-value=5e+02 Score=30.69 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=63.2
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005133 578 YVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIE 657 (713)
Q Consensus 578 ~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~ 657 (713)
+...|+..+|.++-.+. + -.+-..|......+...++|++-.++-+. ...|..|.-...++.+.|+.++|.+
T Consensus 694 li~~g~~k~a~ql~~~F-k--ipdKr~~wLk~~aLa~~~kweeLekfAks-----kksPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 694 LILIGQNKRAEQLKSDF-K--IPDKRLWWLKLTALADIKKWEELEKFAKS-----KKSPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHccchHHHHHHHHhc-C--CcchhhHHHHHHHHHhhhhHHHHHHHHhc-----cCCCCCchhHHHHHHhcccHHHHhh
Confidence 34445555555544332 1 12345666677777888888775554432 2224455556677788899999998
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 005133 658 MMEKAILADKKNPLPMYQKANILLSLEKFDEALEVL 693 (713)
Q Consensus 658 ~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 693 (713)
++-++-. .. .+..+|.+.|++.+|.+.-
T Consensus 766 Yiprv~~----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 766 YIPRVGG----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhccCC----hH----HHHHHHHHhccHHHHHHHH
Confidence 8866422 11 6788889999999887754
No 469
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.65 E-value=4.7e+02 Score=36.60 Aligned_cols=79 Identities=18% Similarity=0.109 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cC----HHHHHHHHHHHHHhCCCCHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL----ED----FENGIRSYQSALRVDARHYNSW 605 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~----g~----~eeAl~~~~~al~~~p~~~~~~ 605 (713)
++.+...|..+.+.|+.++|-+.|..|++++...+.+|...|...... +. -..|+.+|-+|....-. ..+.
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~-skaR 2890 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNS-SKAR 2890 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccc-hhhH
Confidence 456667788888888888888888888888888888888877654432 11 24566666666654322 3333
Q ss_pred HHHHHHHH
Q 005133 606 YGLGMVYL 613 (713)
Q Consensus 606 ~~lg~~y~ 613 (713)
-.++.++.
T Consensus 2891 k~iakvLw 2898 (3550)
T KOG0889|consen 2891 KLIAKVLW 2898 (3550)
T ss_pred HHHHHHHH
Confidence 34444433
No 470
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=49.10 E-value=34 Score=21.91 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 605 WYGLGMVYLRQEKFEFSEHHFRMAF 629 (713)
Q Consensus 605 ~~~lg~~y~~~g~~~eA~~~l~kal 629 (713)
|..+-..|.+.|++++|.+.|.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344445555555555555555443
No 471
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=48.94 E-value=1.2e+02 Score=34.95 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=66.6
Q ss_pred HHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 005133 441 RMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLS 520 (713)
Q Consensus 441 ~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~ 520 (713)
.+.++...+.+....+.-+......+..++..++.+-..+..+.|-.+|+..+..+|+ +++..++.-+...|-...|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 3445566777777777777766677788888899999999999999999999999988 67888888888888887777
Q ss_pred HHHH
Q 005133 521 YLAQ 524 (713)
Q Consensus 521 ~~~~ 524 (713)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 7666
No 472
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=48.10 E-value=3.6e+02 Score=28.49 Aligned_cols=248 Identities=13% Similarity=0.074 Sum_probs=126.4
Q ss_pred cCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 005133 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQ 524 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~ 524 (713)
....+-+++.+..+.-..+-....--....+..+....++...-.-++++. |+-.. .+...++...-...+.
T Consensus 48 TNMiDy~md~~k~l~~sed~p~a~~ekr~~Vla~lkeLe~ev~piv~~le~-Pd~~~-------~~~~~k~~~~~l~~L~ 119 (432)
T KOG2758|consen 48 TNMIDYVMDTYKNLHTSEDMPNALVEKRTEVLAELKELEEEVAPIVKVLEN-PDLIA-------ALRSDKDRVQNLQHLQ 119 (432)
T ss_pred cchHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHH-------HHHhhhhHHHHHHHHH
Confidence 345566777777664333333333344556666666666666655555532 22111 1111111122333344
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CC
Q 005133 525 ELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL--NPR--FAYGHTLCGHEYVALEDFENGIRSYQSALRV-DA 599 (713)
Q Consensus 525 kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~--~p~--~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~-~p 599 (713)
+-....|+..++++..|...+..|+|..|-.++-....+ +|+ ...+.+..-..-....+|+.|++.+.+.-+. +.
T Consensus 120 e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs 199 (432)
T KOG2758|consen 120 EHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDS 199 (432)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 444455667788888888888888888887765544333 222 2233333222344566788888887776553 11
Q ss_pred CC----HHHHHHHH----H---HHHH-cCCHHHHHHHH------HHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHH
Q 005133 600 RH----YNSWYGLG----M---VYLR-QEKFEFSEHHF------RMAFQISPHSSVIMSYLGTAMHAL-KRSGEAIEMME 660 (713)
Q Consensus 600 ~~----~~~~~~lg----~---~y~~-~g~~~eA~~~l------~kal~~~p~~~~~~~~la~~~~~~-g~~eeAl~~l~ 660 (713)
.. ...+.... + +++. -+--+.-++.| -.|++. ..|.++..++.+-.-. .+...+++.+-
T Consensus 200 ~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt--~cPhllRYLatAvvtnk~~rr~~lkdlv 277 (432)
T KOG2758|consen 200 KSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT--SCPHLLRYLATAVVTNKRRRRNRLKDLV 277 (432)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh--hCHHHHHHHHHHhhcchHhhHHHHHHHH
Confidence 11 11111111 1 1111 11112222221 122221 3455666666666554 56667777777
Q ss_pred HHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 661 KAILADK-KNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 661 kal~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
+.++... ...+.....-.|++-.=+++.|...++++-+.--+
T Consensus 278 kVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~n 320 (432)
T KOG2758|consen 278 KVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVN 320 (432)
T ss_pred HHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhc
Confidence 7776532 12222334455666677888888877777654433
No 473
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.99 E-value=1.6e+02 Score=32.28 Aligned_cols=49 Identities=12% Similarity=-0.046 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHccC
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRAVQL-----------NPRFAYGHTLCGHEYVALED 583 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~kal~~-----------~p~~~~a~~~lg~~~~~~g~ 583 (713)
-.++..|..++....|++|+.++-.|-+. -.+.+..-..+.+||+.+.+
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLkn 223 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKN 223 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcc
Confidence 34677788888888888888877665433 11223333445667776654
No 474
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.99 E-value=6.5e+02 Score=31.41 Aligned_cols=179 Identities=13% Similarity=-0.049 Sum_probs=94.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHH------Hhhc----HHHHHHHHHHHHHhCCCCHHHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYF------EVVD----YLEAERAFTLARRASPYSLEGM 503 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~------~~g~----~~eA~~~~~kal~~~p~~~~a~ 503 (713)
..+..|.+++..|+..+|+.+|.++....... .++..+..... ..|+ -..|+.+|.+++++
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~-~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rl-------- 992 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEG-NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRL-------- 992 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccH-HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHH--------
Confidence 46677777888999999999999886554322 23332222110 2221 12245555555543
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 005133 504 DIYSTVLYHLKEDMKLSYLAQELITTDRLA----PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA---YGHTLCGH 576 (713)
Q Consensus 504 ~~la~~l~~~g~~~~A~~~~~kal~~~p~~----~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~---~a~~~lg~ 576 (713)
+...+-.+.+..++.++++.-|++ +.++..+-+.+...|.+-+|.+.+- .+|+.. ..+..+..
T Consensus 993 ------le~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~----~npdserrrdcLRqlvi 1062 (1480)
T KOG4521|consen 993 ------LEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL----RNPDSERRRDCLRQLVI 1062 (1480)
T ss_pred ------HHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH----cCCcHHHHHHHHHHHHH
Confidence 444455666777777777654433 2344445555667777777765443 344422 23444555
Q ss_pred HHHHccCHH------------HHHH-HHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Q 005133 577 EYVALEDFE------------NGIR-SYQSALRVDARHY-NSWYGLGMVYLRQEKFEFSEH-HFRMAFQI 631 (713)
Q Consensus 577 ~~~~~g~~e------------eAl~-~~~~al~~~p~~~-~~~~~lg~~y~~~g~~~eA~~-~l~kal~~ 631 (713)
+++..|+.+ +-.. +++.+-+-.|-.. ..|..|-..+...++|.+|-. .|+.+..+
T Consensus 1063 vLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1063 VLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred HHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 566665543 3333 3444444444322 233333344456667766543 45555544
No 475
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.70 E-value=3.8e+02 Score=28.40 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH
Q 005133 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDA------RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS---VI 638 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p------~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~---~~ 638 (713)
.+++...|..|.+.|+.+.|++.+++..+..- +-.-....+|..|....-..+-++..+..++...+.. ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 57899999999999999999999988766432 1233445667777665444444444444444433321 23
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 639 MSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 639 ~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
-...|.......++.+|-..|-.++..
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 344566666778888888888776643
No 476
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=46.65 E-value=5.4e+02 Score=30.10 Aligned_cols=21 Identities=24% Similarity=0.083 Sum_probs=16.4
Q ss_pred HHHHHHHHHccCCHHHHHHHH
Q 005133 435 ILGEGYRMSCMYRCKDALDVY 455 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l 455 (713)
.+...+.+++.|++++|.++.
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~ 134 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVA 134 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHH
Confidence 345567778999999999999
No 477
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=45.98 E-value=41 Score=21.49 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 673 MYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
|..+...|.+.|++++|.+.|.++.+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666777888888888888887765
No 478
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=45.72 E-value=1.1e+02 Score=24.97 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=49.5
Q ss_pred HHHHHHhhccchhhHHHHHhhhhcCCCchh-HHHHHHHHhhcCCHHHHHHHHhcCCCcchhHHHHH
Q 005133 8 CVQNSLRYFMYRNAIFLCERLCAEFPSEVN-LQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAV 72 (713)
Q Consensus 8 ~i~~~l~~~~~~~A~flaerl~a~~~~~~~-~~llA~~~~~~~~~~~A~~~l~~~~~~~~~~l~A~ 72 (713)
.---..++++++.|.-...-|=-..|+++. ....|..||..|+..+|...|...+++++.-|.+.
T Consensus 12 aalAavNH~L~~ea~ailnalP~li~D~~~r~vcea~llfGL~~~~~A~~~L~~~~~~eA~~Lr~l 77 (79)
T TIGR02498 12 AALAAVNHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLENMDDEEAQLLRSL 77 (79)
T ss_pred HHHHHHccCcHHHHHHHHHhcccccCCHhHHHHHHHHHHHhcCcHHHHHHHHhcCCcHHHHHHHHH
Confidence 333456678888887777777677777664 56668999999999999999999888877766654
No 479
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.52 E-value=39 Score=27.42 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=16.9
Q ss_pred HHHHcCChHHHHHHHHHHHHh
Q 005133 645 AMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 645 ~~~~~g~~eeAl~~l~kal~~ 665 (713)
-.-..|+|++|+.+|..+++.
T Consensus 15 ~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 15 DEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhHhhhHHHHHHHHHHHHHH
Confidence 345778999999999998875
No 480
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.15 E-value=68 Score=31.09 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005133 587 GIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP 633 (713)
Q Consensus 587 Al~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p 633 (713)
.++..++.++..|+ +..+..++.++...|+.++|.....++....|
T Consensus 130 ~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444553 55555666666666666666666666666555
No 481
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=44.90 E-value=2.9e+02 Score=27.14 Aligned_cols=60 Identities=8% Similarity=-0.016 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHH
Q 005133 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGH-EYVALEDFENGIRSYQSALR 596 (713)
Q Consensus 537 ~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~-~~~~~g~~eeAl~~~~~al~ 596 (713)
+..+-......|+++.|-++|--.+...+-+......+|. ++...+.-....++++....
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 3444455566777888887777777766655555455543 34444433333344444433
No 482
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.53 E-value=3.9e+02 Score=27.82 Aligned_cols=201 Identities=7% Similarity=-0.020 Sum_probs=106.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 470 SQVGKAYFEVVDYLEAERAFTLARRASPY--------SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMG 541 (713)
Q Consensus 470 ~~lg~~~~~~g~~~eA~~~~~kal~~~p~--------~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 541 (713)
..+|.-....+++++|+..|.+++...-. .......++.+|...|++..........- ++|...+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr-------e~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR-------EAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH-------HHHHHhc
Confidence 45677777888999999999998876321 12234455555555555544333222111 1111100
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc
Q 005133 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYGLGMVYLRQ 615 (713)
Q Consensus 542 ~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~------~~~~~~lg~~y~~~ 615 (713)
-.+..+..+..++..|... ..++.-+..+...++..... ...-..+..++++.
T Consensus 80 --------k~k~~KiirtLiekf~~~~-------------dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~ 138 (421)
T COG5159 80 --------KPKITKIIRTLIEKFPYSS-------------DSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKT 138 (421)
T ss_pred --------chhHHHHHHHHHHhcCCCC-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0111222333333333221 12222222222222221110 12334577788888
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCChhHH--HHHHHHHHH
Q 005133 616 EKFEFSEHHFRMAFQI------SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA-----DKKNPLPM--YQKANILLS 682 (713)
Q Consensus 616 g~~~eA~~~l~kal~~------~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~-----~p~~~~~~--~~la~~~~~ 682 (713)
|+|.+|+....-.+.. .+.-..++..-..+|.+..+..++...+..|-.. .|....+. ..-|..+..
T Consensus 139 ~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcd 218 (421)
T COG5159 139 GKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCD 218 (421)
T ss_pred ccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeec
Confidence 9999998877665532 2333456777788888888888887777666543 23222221 223445566
Q ss_pred cCCHHHHHHHHHHHHH
Q 005133 683 LEKFDEALEVLEELKE 698 (713)
Q Consensus 683 ~g~~~eA~~~~~kal~ 698 (713)
-.+|.-|..+|-++++
T Consensus 219 d~dyktA~SYF~Ea~E 234 (421)
T COG5159 219 DRDYKTASSYFIEALE 234 (421)
T ss_pred cccchhHHHHHHHHHh
Confidence 6778888888877776
No 483
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.39 E-value=43 Score=27.27 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 639 MSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 639 ~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
+...|.-+-+.|+|++|+.+|..+++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344556667889999999999988864
No 484
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=44.22 E-value=29 Score=34.84 Aligned_cols=23 Identities=17% Similarity=-0.024 Sum_probs=16.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhC
Q 005133 542 NCYSLQKDHETALKNFQRAVQLN 564 (713)
Q Consensus 542 ~~~~~~g~~~~Al~~~~kal~~~ 564 (713)
...+..|+++.|+++...+++.+
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcC
Confidence 34566778888888888877764
No 485
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=43.18 E-value=3.3e+02 Score=26.70 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHH
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM-VYLRQEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~-~y~~~g~~~eA~~~l~kal~ 630 (713)
..+..+-+.....|+++.|-++|--.++..+-+......+|. ++...+.-....++++....
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 345556677788999999999999999988777777777765 44444444444355555443
No 486
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=43.04 E-value=61 Score=28.28 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=13.3
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhC
Q 005133 471 QVGKAYFEVVDYLEAERAFTLARRAS 496 (713)
Q Consensus 471 ~lg~~~~~~g~~~eA~~~~~kal~~~ 496 (713)
..|...+..||+..|.+.+.++.+..
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~ 89 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLS 89 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 34444455555555555555554443
No 487
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=42.79 E-value=4.4e+02 Score=27.97 Aligned_cols=98 Identities=11% Similarity=0.117 Sum_probs=54.5
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005133 578 YVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIE 657 (713)
Q Consensus 578 ~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~ 657 (713)
+...|+...|.++-.+ +++ .+...|+....+|...++|++-..+... ...|..|.-...++.+.|+..+|..
T Consensus 187 li~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 3445665555555333 222 2355666666777777777665544321 2334445555566666677777777
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 005133 658 MMEKAILADKKNPLPMYQKANILLSLEKFDEALEV 692 (713)
Q Consensus 658 ~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 692 (713)
+..++ + .......|.+.|++.+|.+.
T Consensus 259 yI~k~----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 259 YIPKI----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHhC----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 76661 1 13455666667777666554
No 488
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=42.51 E-value=2.6e+02 Score=29.00 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 005133 551 ETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFE 585 (713)
Q Consensus 551 ~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~e 585 (713)
+.|...+.+++.++|....++..+-.+-...|+.+
T Consensus 116 d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 116 DQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 45666666666666666666665555555555443
No 489
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=42.50 E-value=71 Score=27.58 Aligned_cols=43 Identities=21% Similarity=0.067 Sum_probs=35.0
Q ss_pred HHhhccchhhHHHHHhhhhcCCCchhHHHHHHHHhhcCCHHHHHHHH
Q 005133 12 SLRYFMYRNAIFLCERLCAEFPSEVNLQLLATCYLQNNQAYAAYNIL 58 (713)
Q Consensus 12 ~l~~~~~~~A~flaerl~a~~~~~~~~~llA~~~~~~~~~~~A~~~l 58 (713)
.+++|.|+.|+.+.+.+ +.++-.=|+|.|=++.|.-..+..-|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rlGl~s~l~~rl 91 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRLGLGSALESRL 91 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHHHhhccHHHHHHHH
Confidence 45679999999999887 46777789999999999988665555
No 490
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.49 E-value=51 Score=26.77 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=10.5
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 005133 614 RQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 614 ~~g~~~eA~~~l~kal~~ 631 (713)
..|+|++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 345666666666666543
No 491
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.33 E-value=47 Score=27.04 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=9.3
Q ss_pred HccCHHHHHHHHHHHHH
Q 005133 580 ALEDFENGIRSYQSALR 596 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~ 596 (713)
..|+|++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45555555555555544
No 492
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=41.08 E-value=4.6e+02 Score=27.78 Aligned_cols=76 Identities=14% Similarity=0.088 Sum_probs=45.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Q 005133 612 YLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALE 691 (713)
Q Consensus 612 y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 691 (713)
+...|+...|.++-.+ +++ .+...|+....++...++|++=..+.. ....|..|.-...++...|+..+|..
T Consensus 187 li~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~-----skKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAENKDWDELEKFAK-----SKKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHhcCCHHHHHHHHh-----CCCCCCChHHHHHHHHHCCCHHHHHH
Confidence 3456666666555333 233 344566667777777777766444322 13456666667777777777777777
Q ss_pred HHHH
Q 005133 692 VLEE 695 (713)
Q Consensus 692 ~~~k 695 (713)
+..+
T Consensus 259 yI~k 262 (319)
T PF04840_consen 259 YIPK 262 (319)
T ss_pred HHHh
Confidence 7666
No 493
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=40.74 E-value=53 Score=22.01 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=20.7
Q ss_pred HHHHHHH--HHHHhcC-----ChhHHHHHHHHHhhhC
Q 005133 102 AGHYLMG--LIYRYTD-----RRKNAIHHYKMALSID 131 (713)
Q Consensus 102 ~~~~llg--~~~~~~~-----~~~~A~~~y~~Al~~~ 131 (713)
.+.+.|| .+|.... +.++|+.+|++|-+.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 4567788 5444443 4689999999987653
No 494
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=40.74 E-value=1.3e+02 Score=27.02 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhC
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPH---------------SSVIMSYLGTAMHALKRSGEAIEMMEKAI----LAD 666 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal~~~p~---------------~~~~~~~la~~~~~~g~~eeAl~~l~kal----~~~ 666 (713)
..+|....+.+++-.++-+|++|+.+..+ ......++|..+..+|+.+-.+++++-|- .+-
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLi 84 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLI 84 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555555555543111 01245689999999999999999987654 445
Q ss_pred CCCh
Q 005133 667 KKNP 670 (713)
Q Consensus 667 p~~~ 670 (713)
|+-+
T Consensus 85 PQCp 88 (140)
T PF10952_consen 85 PQCP 88 (140)
T ss_pred cCCC
Confidence 6544
No 495
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.72 E-value=1.1e+02 Score=33.76 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHcCcc
Q 005133 429 LLGLLRILGEGYRMSCMYRCKDALDVYLKLPH 460 (713)
Q Consensus 429 l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~ 460 (713)
+-.+...|..||.+...|+|.+|+..|+.++.
T Consensus 201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~ 232 (422)
T PF06957_consen 201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILH 232 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33455678899999999999999999998743
No 496
>PRK09687 putative lyase; Provisional
Probab=40.71 E-value=4.4e+02 Score=27.35 Aligned_cols=207 Identities=8% Similarity=-0.058 Sum_probs=125.7
Q ss_pred HHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-----HHH
Q 005133 449 KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDY----LEAERAFTLARRASPYSLEGMDIYSTVLYHLKED-----MKL 519 (713)
Q Consensus 449 ~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~----~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~-----~~A 519 (713)
.++...+.++... .++.+....+.++.+.|+. .+++..+..++..+++ .......+.++.+.+.. .++
T Consensus 53 ~~~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d-~~VR~~A~~aLG~~~~~~~~~~~~a 129 (280)
T PRK09687 53 QDVFRLAIELCSS--KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKS-ACVRASAINATGHRCKKNPLYSPKI 129 (280)
T ss_pred chHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCC-HHHHHHHHHHHhcccccccccchHH
Confidence 5555555555433 2556666777777778763 5677777777666655 44444444444444321 222
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC
Q 005133 520 SYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE-DFENGIRSYQSALRVD 598 (713)
Q Consensus 520 ~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g-~~eeAl~~~~~al~~~ 598 (713)
...+..++. + .++.+.+..+..+...++ .+|+..+..++.- + +..+...-+..+-..+ ...+++..+..++.
T Consensus 130 ~~~l~~~~~-D-~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d-~-~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-- 202 (280)
T PRK09687 130 VEQSQITAF-D-KSTNVRFAVAFALSVIND-EAAIPLLINLLKD-P-NGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-- 202 (280)
T ss_pred HHHHHHHhh-C-CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-C-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--
Confidence 333222222 2 256677777777767665 6788998888863 2 2333333333333322 24578888888874
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005133 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLP 672 (713)
Q Consensus 599 p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~ 672 (713)
..+..+...-+..+.+.|+ ..|+..+.+.++... +....+.++...|.. +|+..+.+++..++ +..+
T Consensus 203 D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v 269 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEI 269 (280)
T ss_pred CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhH
Confidence 2345666666666667776 689999988887532 345666777777774 79999999998777 4443
No 497
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=40.64 E-value=67 Score=20.56 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 672 PMYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
.|..+..++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555666666666666666666554
No 498
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=40.58 E-value=3e+02 Score=28.53 Aligned_cols=134 Identities=10% Similarity=0.017 Sum_probs=71.7
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCCC--HHHHHHHHHH---HHHccCH----HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 473 GKAYFEVVDYLEAERAFTLARRASPYS--LEGMDIYSTV---LYHLKED----MKLSYLAQELITTDRLAPQSWCAMGNC 543 (713)
Q Consensus 473 g~~~~~~g~~~eA~~~~~kal~~~p~~--~~a~~~la~~---l~~~g~~----~~A~~~~~kal~~~p~~~~~~~~la~~ 543 (713)
...+...++|++=-+.|.+........ .+..+..+.. +...... ......++.-++..|++..++..+|.+
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 345667778887777777776543321 1111111111 1112111 134556666677777777777777766
Q ss_pred HHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005133 544 YSLQKDHETALKNFQRAVQL-NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFE 619 (713)
Q Consensus 544 ~~~~g~~~~Al~~~~kal~~-~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~ 619 (713)
+....=- -+.... +.-....|... ..-.+.|...+.+++.++|....++..+-.+-...|..+
T Consensus 87 ~~~~Aw~-------~RG~~~A~~V~~~~W~~~------~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 87 WVHRAWD-------IRGSGYASTVTEAQWLGA------HQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHH-------HHccchhcccCHHHHHHH------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 5542100 000000 00111222111 122467899999999999999888888877776666543
No 499
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=40.33 E-value=9.3 Score=43.71 Aligned_cols=91 Identities=13% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH--HhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHH--HHhCCC-CHHHHHHHHH
Q 005133 537 WCAMGNCYSLQKDHETALKNFQRAV--QLNPR-FAYGHTLCGHEYVALEDFENGIRSYQSA--LRVDAR-HYNSWYGLGM 610 (713)
Q Consensus 537 ~~~la~~~~~~g~~~~Al~~~~kal--~~~p~-~~~a~~~lg~~~~~~g~~eeAl~~~~~a--l~~~p~-~~~~~~~lg~ 610 (713)
....+..+...|++..|...+.+.- .+.+. ........+.+....|++++|+..+... ..+.+. ....+...+.
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~ 106 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQ 106 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHH
Confidence 3344556666666666666666544 12221 2334445566666666666666666531 111111 1233444566
Q ss_pred HHHHcCCHHHHHHHHHH
Q 005133 611 VYLRQEKFEFSEHHFRM 627 (713)
Q Consensus 611 ~y~~~g~~~eA~~~l~k 627 (713)
+|...|++-+|...+-.
T Consensus 107 a~~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 107 AYEQQGDPLAAARERIA 123 (536)
T ss_dssp -----------------
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 66666666665554433
No 500
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.21 E-value=1.3e+02 Score=33.01 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 673 MYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
+..-|.+.+.+|+-++|.++++.+..
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34457778888888888888877654
Done!