Query 005133
Match_columns 713
No_of_seqs 991 out of 1991
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 16:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.4E-39 1.5E-43 369.3 48.8 484 3-712 85-592 (597)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-37 5.5E-42 337.3 38.9 269 443-711 112-380 (388)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1E-35 3.5E-40 323.1 41.6 249 437-685 140-388 (388)
4 2gw1_A Mitochondrial precursor 100.0 2.8E-34 9.5E-39 322.0 31.0 277 434-711 188-490 (514)
5 2xpi_A Anaphase-promoting comp 100.0 5.5E-32 1.9E-36 310.2 40.6 273 439-712 279-558 (597)
6 3fp2_A TPR repeat-containing p 100.0 4.3E-33 1.5E-37 314.7 30.5 269 439-708 209-500 (537)
7 3ieg_A DNAJ homolog subfamily 100.0 2.8E-29 9.7E-34 266.7 41.6 274 438-711 43-347 (359)
8 2y4t_A DNAJ homolog subfamily 100.0 4E-30 1.4E-34 283.9 35.3 254 436-689 147-444 (450)
9 3hym_B Cell division cycle pro 100.0 3.1E-30 1.1E-34 271.4 32.0 278 435-712 25-312 (330)
10 2gw1_A Mitochondrial precursor 100.0 5.4E-30 1.8E-34 287.1 35.0 244 434-678 239-491 (514)
11 2y4t_A DNAJ homolog subfamily 100.0 2.6E-29 9E-34 277.3 39.3 272 440-711 68-370 (450)
12 3ieg_A DNAJ homolog subfamily 100.0 1.1E-28 3.8E-33 262.2 38.1 281 432-712 3-314 (359)
13 3fp2_A TPR repeat-containing p 100.0 1.2E-28 4.1E-33 278.2 39.0 240 434-674 245-500 (537)
14 4g1t_A Interferon-induced prot 100.0 5.8E-29 2E-33 276.8 25.7 276 436-711 142-471 (472)
15 1fch_A Peroxisomal targeting s 100.0 4.7E-28 1.6E-32 259.6 29.1 271 441-712 34-338 (368)
16 1fch_A Peroxisomal targeting s 100.0 9.3E-28 3.2E-32 257.3 29.2 264 435-699 67-359 (368)
17 4eqf_A PEX5-related protein; a 100.0 4.5E-28 1.5E-32 260.3 26.7 264 435-698 68-355 (365)
18 3cv0_A Peroxisome targeting si 100.0 4.6E-28 1.6E-32 254.4 25.9 269 435-703 24-319 (327)
19 4eqf_A PEX5-related protein; a 100.0 4.2E-28 1.4E-32 260.5 25.7 243 460-702 59-313 (365)
20 3hym_B Cell division cycle pro 100.0 5.1E-27 1.8E-31 246.7 31.4 256 457-712 13-278 (330)
21 2h6f_A Protein farnesyltransfe 100.0 9E-28 3.1E-32 260.5 24.5 253 458-711 89-360 (382)
22 3u4t_A TPR repeat-containing p 99.9 4.8E-26 1.6E-30 233.3 26.4 246 466-712 3-263 (272)
23 3uq3_A Heat shock protein STI1 99.9 1.1E-25 3.9E-30 227.7 28.5 239 465-712 4-255 (258)
24 4g1t_A Interferon-induced prot 99.9 1.9E-25 6.6E-30 248.3 32.2 226 443-678 224-472 (472)
25 3cv0_A Peroxisome targeting si 99.9 1.9E-25 6.6E-30 234.3 29.8 248 465-712 20-294 (327)
26 2h6f_A Protein farnesyltransfe 99.9 7.2E-26 2.5E-30 245.5 25.2 247 436-683 101-366 (382)
27 3mkr_A Coatomer subunit epsilo 99.9 1.3E-24 4.6E-29 227.1 30.0 262 439-708 6-273 (291)
28 2pl2_A Hypothetical conserved 99.9 5.3E-25 1.8E-29 219.6 24.9 195 501-696 6-211 (217)
29 2pl2_A Hypothetical conserved 99.9 5.6E-25 1.9E-29 219.5 24.1 200 463-663 2-212 (217)
30 2xm6_A Protein corresponding t 99.9 7.2E-23 2.5E-27 229.8 44.2 254 445-712 164-448 (490)
31 3u4t_A TPR repeat-containing p 99.9 4.7E-25 1.6E-29 225.9 23.3 250 434-684 5-269 (272)
32 3uq3_A Heat shock protein STI1 99.9 1.5E-24 5.3E-29 219.3 26.3 238 433-679 6-256 (258)
33 3sf4_A G-protein-signaling mod 99.9 1.9E-24 6.4E-29 234.0 19.5 270 432-701 9-338 (406)
34 4a1s_A PINS, partner of inscut 99.9 2.8E-24 9.5E-29 234.2 19.9 272 432-703 48-376 (411)
35 2q7f_A YRRB protein; TPR, prot 99.9 2E-23 6.7E-28 209.6 24.3 218 466-683 23-240 (243)
36 3ro2_A PINS homolog, G-protein 99.9 3.6E-24 1.2E-28 224.3 18.8 272 432-703 5-336 (338)
37 2q7f_A YRRB protein; TPR, prot 99.9 5E-23 1.7E-27 206.6 25.3 214 499-712 22-235 (243)
38 2xm6_A Protein corresponding t 99.9 2.2E-21 7.5E-26 217.7 41.4 256 437-706 188-474 (490)
39 1ouv_A Conserved hypothetical 99.9 4.9E-22 1.7E-26 204.5 33.1 237 462-710 2-262 (273)
40 3vtx_A MAMA; tetratricopeptide 99.9 7.7E-23 2.6E-27 197.3 24.8 179 532-712 3-181 (184)
41 2ooe_A Cleavage stimulation fa 99.9 2E-21 6.8E-26 220.3 39.8 220 483-702 255-495 (530)
42 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.8E-23 9.6E-28 212.6 21.5 246 443-693 16-269 (275)
43 2vq2_A PILW, putative fimbrial 99.9 6.9E-22 2.4E-26 195.3 29.4 215 462-710 4-222 (225)
44 2ho1_A Type 4 fimbrial biogene 99.9 3.2E-22 1.1E-26 202.5 27.1 215 461-709 31-248 (252)
45 3mkr_A Coatomer subunit epsilo 99.9 1.3E-21 4.3E-26 204.5 31.6 245 437-693 39-288 (291)
46 2vq2_A PILW, putative fimbrial 99.9 1.5E-21 5.1E-26 192.9 30.2 206 433-638 9-218 (225)
47 2ho1_A Type 4 fimbrial biogene 99.9 7E-22 2.4E-26 199.9 27.8 208 432-639 37-246 (252)
48 4abn_A Tetratricopeptide repea 99.9 2.7E-22 9.1E-27 224.4 24.5 216 479-695 81-317 (474)
49 3vtx_A MAMA; tetratricopeptide 99.9 9.4E-22 3.2E-26 189.6 24.8 172 464-635 3-174 (184)
50 4abn_A Tetratricopeptide repea 99.9 3.8E-22 1.3E-26 223.2 22.9 214 447-661 83-317 (474)
51 2ooe_A Cleavage stimulation fa 99.9 6.5E-20 2.2E-24 207.8 39.7 260 445-705 143-460 (530)
52 2ond_A Cleavage stimulation fa 99.9 2E-21 6.8E-26 204.4 24.8 252 449-712 33-305 (308)
53 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.5E-21 5E-26 199.7 22.5 233 473-707 12-252 (275)
54 2ond_A Cleavage stimulation fa 99.9 1E-20 3.5E-25 199.0 28.2 222 483-704 33-275 (308)
55 1ouv_A Conserved hypothetical 99.9 3.8E-20 1.3E-24 190.3 30.7 227 434-672 8-258 (273)
56 4i17_A Hypothetical protein; T 99.9 2.4E-20 8.1E-25 186.4 27.4 211 463-680 4-224 (228)
57 3sf4_A G-protein-signaling mod 99.9 1.9E-21 6.7E-26 210.2 20.3 241 463-703 6-300 (406)
58 4i17_A Hypothetical protein; T 99.9 5.9E-21 2E-25 190.8 22.3 208 497-711 4-221 (228)
59 4a1s_A PINS, partner of inscut 99.9 9.7E-22 3.3E-26 214.0 18.0 239 464-702 46-335 (411)
60 4gyw_A UDP-N-acetylglucosamine 99.9 4.3E-21 1.5E-25 223.8 21.1 173 530-702 5-177 (723)
61 3nf1_A KLC 1, kinesin light ch 99.9 1.1E-21 3.9E-26 203.9 14.3 243 460-702 21-310 (311)
62 3ro2_A PINS homolog, G-protein 99.9 3.5E-21 1.2E-25 201.5 18.0 238 466-703 5-296 (338)
63 3e4b_A ALGK; tetratricopeptide 99.9 4.5E-20 1.5E-24 205.0 24.4 238 447-700 160-422 (452)
64 3ulq_A Response regulator aspa 99.8 1.8E-20 6.3E-25 202.9 20.0 233 469-702 106-371 (383)
65 4gyw_A UDP-N-acetylglucosamine 99.8 4.9E-20 1.7E-24 214.9 22.1 171 462-666 5-175 (723)
66 3dra_A Protein farnesyltransfe 99.8 1.2E-18 4E-23 182.1 27.2 231 449-709 50-298 (306)
67 3ulq_A Response regulator aspa 99.8 1.6E-19 5.5E-24 195.5 19.7 243 424-667 95-370 (383)
68 3qky_A Outer membrane assembly 99.8 6.7E-19 2.3E-23 179.9 22.8 213 461-690 10-252 (261)
69 3as5_A MAMA; tetratricopeptide 99.8 8E-19 2.7E-23 167.2 21.7 176 534-709 8-183 (186)
70 3nf1_A KLC 1, kinesin light ch 99.8 3.6E-20 1.2E-24 192.5 12.5 235 434-668 29-310 (311)
71 1xi4_A Clathrin heavy chain; a 99.8 2.7E-17 9.3E-22 195.2 37.9 240 435-694 1108-1379(1630)
72 2pzi_A Probable serine/threoni 99.8 3.1E-19 1.1E-23 208.4 20.7 191 457-651 385-583 (681)
73 3qky_A Outer membrane assembly 99.8 8.8E-19 3E-23 179.0 21.5 179 529-707 10-232 (261)
74 3dra_A Protein farnesyltransfe 99.8 4.3E-18 1.5E-22 177.8 26.5 207 435-641 70-298 (306)
75 1qqe_A Vesicular transport pro 99.8 3.4E-19 1.2E-23 185.9 16.2 199 510-708 47-278 (292)
76 1hz4_A MALT regulatory protein 99.8 1.1E-17 3.7E-22 180.0 27.8 268 434-701 16-324 (373)
77 3q15_A PSP28, response regulat 99.8 1.4E-18 4.8E-23 187.9 20.8 249 424-700 93-366 (378)
78 2pzi_A Probable serine/threoni 99.8 5.9E-19 2E-23 206.0 18.3 188 494-685 388-583 (681)
79 1xi4_A Clathrin heavy chain; a 99.8 2.2E-16 7.4E-21 187.6 38.9 201 467-684 1196-1415(1630)
80 3urz_A Uncharacterized protein 99.8 1.7E-18 5.7E-23 171.2 17.6 166 536-702 6-189 (208)
81 4ga2_A E3 SUMO-protein ligase 99.8 3.6E-19 1.2E-23 166.5 11.9 147 539-685 2-149 (150)
82 3as5_A MAMA; tetratricopeptide 99.8 8.5E-18 2.9E-22 160.1 20.8 152 519-670 27-178 (186)
83 1qqe_A Vesicular transport pro 99.8 1.2E-18 3.9E-23 181.9 15.4 220 447-680 32-284 (292)
84 3e4b_A ALGK; tetratricopeptide 99.8 1.4E-17 4.7E-22 185.0 23.7 166 535-711 177-361 (452)
85 3edt_B KLC 2, kinesin light ch 99.8 1.3E-18 4.6E-23 177.6 13.4 230 444-700 13-282 (283)
86 3urz_A Uncharacterized protein 99.8 9.9E-18 3.4E-22 165.6 19.1 195 465-679 3-199 (208)
87 3dss_A Geranylgeranyl transfer 99.8 2.1E-16 7.1E-21 166.1 29.9 237 440-676 37-315 (331)
88 3dss_A Geranylgeranyl transfer 99.8 6.8E-16 2.3E-20 162.2 33.1 233 478-710 41-315 (331)
89 3edt_B KLC 2, kinesin light ch 99.8 2.4E-18 8.3E-23 175.6 12.9 205 434-665 45-281 (283)
90 2yhc_A BAMD, UPF0169 lipoprote 99.8 4.1E-17 1.4E-21 163.1 21.4 191 499-705 3-219 (225)
91 4ga2_A E3 SUMO-protein ligase 99.8 2.7E-18 9.4E-23 160.5 11.0 144 508-651 5-149 (150)
92 2yhc_A BAMD, UPF0169 lipoprote 99.7 7.4E-17 2.5E-21 161.2 21.3 204 435-671 7-219 (225)
93 2vsy_A XCC0866; transferase, g 99.7 1.4E-16 4.7E-21 182.0 21.4 165 513-677 2-169 (568)
94 3q15_A PSP28, response regulat 99.7 9.8E-17 3.4E-21 173.3 18.9 263 433-695 13-328 (378)
95 2r5s_A Uncharacterized protein 99.7 4.1E-17 1.4E-21 156.4 13.3 164 534-698 6-172 (176)
96 4gco_A Protein STI-1; structur 99.7 1E-16 3.5E-21 145.2 15.0 116 563-678 8-123 (126)
97 1hz4_A MALT regulatory protein 99.7 7.2E-16 2.5E-20 165.7 24.4 236 466-701 14-284 (373)
98 3q7a_A Farnesyltransferase alp 99.7 7.7E-16 2.6E-20 162.4 23.9 225 483-707 71-340 (349)
99 4gco_A Protein STI-1; structur 99.7 8.6E-17 2.9E-21 145.6 14.4 119 593-711 4-122 (126)
100 3qou_A Protein YBBN; thioredox 99.7 2.6E-16 9E-21 163.7 19.6 168 531-698 114-283 (287)
101 2r5s_A Uncharacterized protein 99.7 1.8E-16 6.2E-21 151.9 14.2 161 503-664 9-172 (176)
102 2ifu_A Gamma-SNAP; membrane fu 99.7 2.4E-16 8.3E-21 165.5 15.9 222 443-691 2-253 (307)
103 3qou_A Protein YBBN; thioredox 99.7 1.2E-15 4E-20 158.7 20.6 167 498-664 115-283 (287)
104 2ifu_A Gamma-SNAP; membrane fu 99.7 2.6E-16 8.9E-21 165.2 15.7 196 445-657 29-253 (307)
105 2vsy_A XCC0866; transferase, g 99.7 1.5E-15 5E-20 173.5 22.5 165 479-643 2-169 (568)
106 3gyz_A Chaperone protein IPGC; 99.7 1.2E-16 3.9E-21 149.6 10.1 115 589-703 23-137 (151)
107 3q7a_A Farnesyltransferase alp 99.7 7.9E-15 2.7E-19 154.7 24.8 235 445-679 67-346 (349)
108 3gyz_A Chaperone protein IPGC; 99.7 3E-16 1E-20 146.8 10.7 118 553-670 21-138 (151)
109 3rjv_A Putative SEL1 repeat pr 99.6 4.8E-15 1.6E-19 146.8 19.5 176 518-701 4-199 (212)
110 1p5q_A FKBP52, FK506-binding p 99.6 3.9E-17 1.3E-21 174.0 3.2 180 474-655 73-283 (336)
111 4f3v_A ESX-1 secretion system 99.6 7.5E-16 2.6E-20 157.5 12.2 203 471-676 12-247 (282)
112 1p5q_A FKBP52, FK506-binding p 99.6 3.3E-17 1.1E-21 174.5 2.2 191 438-630 71-293 (336)
113 4f3v_A ESX-1 secretion system 99.6 4.9E-16 1.7E-20 158.9 10.6 197 512-710 18-247 (282)
114 2fo7_A Synthetic consensus TPR 99.6 1.9E-14 6.7E-19 128.6 19.8 133 570-702 3-135 (136)
115 1b89_A Protein (clathrin heavy 99.6 3.1E-16 1.1E-20 169.1 9.3 235 444-712 15-249 (449)
116 3rjv_A Putative SEL1 repeat pr 99.6 2.3E-14 7.8E-19 141.9 20.9 184 484-677 4-207 (212)
117 2fo7_A Synthetic consensus TPR 99.6 3.6E-14 1.2E-18 126.8 19.7 134 535-668 2-135 (136)
118 2vgx_A Chaperone SYCD; alterna 99.6 1.8E-15 6.3E-20 140.9 11.1 120 555-674 8-127 (148)
119 1dce_A Protein (RAB geranylger 99.6 3.1E-15 1.1E-19 170.2 15.0 185 518-702 47-270 (567)
120 2vgx_A Chaperone SYCD; alterna 99.6 2.8E-15 9.7E-20 139.6 11.7 121 587-707 6-126 (148)
121 3mv2_B Coatomer subunit epsilo 99.6 3.5E-14 1.2E-18 147.0 20.3 247 442-708 23-291 (310)
122 2c2l_A CHIP, carboxy terminus 99.6 3.7E-15 1.3E-19 154.5 11.7 103 464-566 2-104 (281)
123 2c2l_A CHIP, carboxy terminus 99.6 5.9E-15 2E-19 152.9 13.2 198 497-699 1-199 (281)
124 2xcb_A PCRH, regulatory protei 99.6 6.9E-15 2.3E-19 135.6 12.0 126 555-680 5-130 (142)
125 1b89_A Protein (clathrin heavy 99.6 1.3E-15 4.4E-20 164.4 6.7 237 436-701 36-274 (449)
126 2xcb_A PCRH, regulatory protei 99.6 9.2E-15 3.1E-19 134.7 11.3 120 589-708 5-124 (142)
127 4e6h_A MRNA 3'-END-processing 99.6 2.5E-11 8.6E-16 140.0 42.2 226 482-707 325-578 (679)
128 2qfc_A PLCR protein; TPR, HTH, 99.6 1.6E-13 5.4E-18 142.7 20.8 165 535-699 76-266 (293)
129 1hh8_A P67PHOX, NCF-2, neutrop 99.6 8.6E-14 3E-18 136.6 17.7 134 534-670 6-155 (213)
130 2e2e_A Formate-dependent nitri 99.6 2.4E-14 8.2E-19 136.7 13.2 130 544-673 20-152 (177)
131 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.7E-13 5.7E-18 134.5 19.6 132 501-635 7-154 (213)
132 1a17_A Serine/threonine protei 99.6 1.8E-13 6.1E-18 128.0 18.8 130 569-698 14-145 (166)
133 2fbn_A 70 kDa peptidylprolyl i 99.6 7.2E-15 2.5E-19 143.4 9.5 158 540-697 10-184 (198)
134 1dce_A Protein (RAB geranylger 99.6 1.3E-13 4.5E-18 156.7 21.3 163 549-711 44-233 (567)
135 1a17_A Serine/threonine protei 99.5 2.9E-13 1E-17 126.6 19.1 132 534-665 13-146 (166)
136 3upv_A Heat shock protein STI1 99.5 1.1E-13 3.7E-18 124.2 15.4 112 569-680 5-122 (126)
137 2e2e_A Formate-dependent nitri 99.5 4.9E-14 1.7E-18 134.5 13.6 126 580-705 22-150 (177)
138 3upv_A Heat shock protein STI1 99.5 1.5E-13 5.3E-18 123.2 15.6 116 533-648 3-124 (126)
139 2qfc_A PLCR protein; TPR, HTH, 99.5 7.2E-13 2.5E-17 137.7 21.6 172 466-665 75-266 (293)
140 2lni_A Stress-induced-phosphop 99.5 1.9E-13 6.4E-18 122.6 14.9 120 565-684 13-132 (133)
141 3sz7_A HSC70 cochaperone (SGT) 99.5 1.1E-13 3.8E-18 130.5 13.8 118 564-681 7-124 (164)
142 2fbn_A 70 kDa peptidylprolyl i 99.5 3E-14 1E-18 139.0 9.9 156 507-662 11-183 (198)
143 2vyi_A SGTA protein; chaperone 99.5 1.9E-13 6.5E-18 121.7 14.4 118 568-685 12-129 (131)
144 3u3w_A Transcriptional activat 99.5 2.8E-13 9.5E-18 140.8 17.8 162 539-700 80-267 (293)
145 2vyi_A SGTA protein; chaperone 99.5 2.9E-13 9.8E-18 120.6 15.4 123 531-653 9-131 (131)
146 3sz7_A HSC70 cochaperone (SGT) 99.5 3E-13 1E-17 127.5 15.6 118 530-647 7-124 (164)
147 2lni_A Stress-induced-phosphop 99.5 3.2E-13 1.1E-17 121.1 14.9 121 531-651 13-133 (133)
148 1na0_A Designed protein CTPR3; 99.5 2E-12 6.8E-17 114.0 17.9 116 568-683 9-124 (125)
149 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 4.3E-14 1.5E-18 157.0 7.9 146 512-657 246-406 (457)
150 1na0_A Designed protein CTPR3; 99.5 3.3E-12 1.1E-16 112.6 18.2 121 530-650 4-125 (125)
151 3u3w_A Transcriptional activat 99.5 1.3E-12 4.5E-17 135.7 18.0 170 468-665 77-266 (293)
152 3q49_B STIP1 homology and U bo 99.5 1E-12 3.6E-17 119.0 15.0 105 564-668 5-109 (137)
153 4gcn_A Protein STI-1; structur 99.4 1.5E-12 5.1E-17 117.6 15.0 62 571-632 11-72 (127)
154 4gcn_A Protein STI-1; structur 99.4 8.3E-13 2.9E-17 119.3 13.2 107 601-708 7-120 (127)
155 3q49_B STIP1 homology and U bo 99.4 1.4E-12 4.8E-17 118.2 14.8 121 529-649 4-129 (137)
156 3gw4_A Uncharacterized protein 99.4 1.2E-12 4.2E-17 126.8 14.8 154 546-699 4-176 (203)
157 1hxi_A PEX5, peroxisome target 99.4 9.2E-13 3.1E-17 118.0 12.5 99 605-703 20-118 (121)
158 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1.6E-13 5.4E-18 152.4 9.0 147 478-624 246-407 (457)
159 1elw_A TPR1-domain of HOP; HOP 99.4 5.2E-12 1.8E-16 110.2 16.7 108 571-678 7-114 (118)
160 3mv2_B Coatomer subunit epsilo 99.4 1.2E-11 4E-16 128.0 21.1 184 485-673 85-290 (310)
161 1elw_A TPR1-domain of HOP; HOP 99.4 6.4E-12 2.2E-16 109.6 16.5 113 534-646 4-116 (118)
162 3rkv_A Putative peptidylprolyl 99.4 1.3E-12 4.6E-17 122.7 12.8 86 598-683 59-145 (162)
163 1hxi_A PEX5, peroxisome target 99.4 1.6E-12 5.6E-17 116.3 12.6 98 537-634 20-117 (121)
164 2dba_A Smooth muscle cell asso 99.4 5.6E-12 1.9E-16 115.3 15.9 116 565-680 25-143 (148)
165 2hr2_A Hypothetical protein; a 99.4 1E-12 3.5E-17 122.2 10.9 107 570-676 13-142 (159)
166 3rkv_A Putative peptidylprolyl 99.4 2.2E-12 7.6E-17 121.2 13.5 120 534-653 11-149 (162)
167 2hr2_A Hypothetical protein; a 99.4 1.5E-12 5.2E-17 121.0 12.0 105 602-706 11-138 (159)
168 3gw4_A Uncharacterized protein 99.4 3.3E-12 1.1E-16 123.7 13.7 155 513-667 5-178 (203)
169 2dba_A Smooth muscle cell asso 99.4 9.9E-12 3.4E-16 113.6 16.1 119 529-647 23-144 (148)
170 1wao_1 Serine/threonine protei 99.4 1E-13 3.6E-18 154.6 2.5 126 535-660 7-134 (477)
171 2kck_A TPR repeat; tetratricop 99.4 2.7E-12 9.2E-17 111.1 11.0 106 598-703 2-110 (112)
172 2xev_A YBGF; tetratricopeptide 99.4 1.2E-11 3.9E-16 110.8 15.5 108 571-678 5-118 (129)
173 4e6h_A MRNA 3'-END-processing 99.4 3.2E-11 1.1E-15 139.1 22.5 224 449-672 326-577 (679)
174 1wao_1 Serine/threonine protei 99.3 3E-13 1E-17 150.9 5.0 139 500-638 6-157 (477)
175 2xev_A YBGF; tetratricopeptide 99.3 2E-11 6.8E-16 109.2 16.1 116 535-650 3-124 (129)
176 2kck_A TPR repeat; tetratricop 99.3 5.4E-12 1.8E-16 109.1 11.5 104 565-668 3-109 (112)
177 1elr_A TPR2A-domain of HOP; HO 99.3 7.2E-12 2.5E-16 111.5 12.5 112 569-681 5-123 (131)
178 1elr_A TPR2A-domain of HOP; HO 99.3 1.1E-11 3.8E-16 110.3 13.6 118 533-651 3-127 (131)
179 2if4_A ATFKBP42; FKBP-like, al 99.3 1.2E-12 4.3E-17 139.2 7.9 156 533-705 178-334 (338)
180 1zu2_A Mitochondrial import re 99.3 6.5E-12 2.2E-16 116.5 10.3 88 583-670 17-125 (158)
181 1ihg_A Cyclophilin 40; ppiase 99.3 1.6E-11 5.5E-16 132.2 14.6 140 534-691 223-362 (370)
182 2if4_A ATFKBP42; FKBP-like, al 99.3 3E-12 1E-16 136.3 8.7 156 498-670 177-333 (338)
183 3ro3_A PINS homolog, G-protein 99.3 1.9E-11 6.5E-16 112.7 12.3 98 604-701 51-160 (164)
184 4b4t_Q 26S proteasome regulato 99.3 5.4E-11 1.8E-15 129.9 17.8 202 435-664 7-244 (434)
185 1ihg_A Cyclophilin 40; ppiase 99.3 2.8E-11 9.5E-16 130.3 15.0 140 500-657 223-362 (370)
186 1zu2_A Mitochondrial import re 99.3 1.5E-11 5.2E-16 114.0 10.7 91 546-636 14-125 (158)
187 3ro3_A PINS homolog, G-protein 99.3 3.3E-11 1.1E-15 111.1 12.8 134 534-667 9-160 (164)
188 3k9i_A BH0479 protein; putativ 99.3 6.6E-12 2.2E-16 111.2 7.3 91 582-672 4-97 (117)
189 3k9i_A BH0479 protein; putativ 99.3 9.7E-12 3.3E-16 110.1 8.3 104 546-649 2-108 (117)
190 4b4t_Q 26S proteasome regulato 99.3 1.1E-10 3.6E-15 127.6 18.2 216 467-699 5-245 (434)
191 3ffl_A Anaphase-promoting comp 99.2 6.7E-12 2.3E-16 115.5 6.6 102 4-112 22-166 (167)
192 2uy1_A Cleavage stimulation fa 99.2 2.6E-08 8.8E-13 111.3 31.6 261 433-696 15-380 (493)
193 2kat_A Uncharacterized protein 99.0 1.7E-09 5.9E-14 94.9 12.4 81 587-667 4-84 (115)
194 2l6j_A TPR repeat-containing p 99.0 3.7E-10 1.3E-14 97.7 7.2 91 569-659 5-101 (111)
195 2l6j_A TPR repeat-containing p 99.0 1.1E-10 3.9E-15 101.0 3.8 95 601-695 3-103 (111)
196 2kat_A Uncharacterized protein 99.0 2.7E-09 9.2E-14 93.6 12.7 83 552-634 3-85 (115)
197 1na3_A Designed protein CTPR2; 99.0 3.2E-09 1.1E-13 88.2 11.5 82 602-683 9-90 (91)
198 2uy1_A Cleavage stimulation fa 99.0 2.2E-07 7.5E-12 103.7 29.3 203 483-698 196-412 (493)
199 1na3_A Designed protein CTPR2; 99.0 5.2E-09 1.8E-13 86.9 11.8 82 568-649 9-90 (91)
200 1klx_A Cysteine rich protein B 98.9 1.7E-08 5.8E-13 92.2 15.4 119 583-711 10-136 (138)
201 1klx_A Cysteine rich protein B 98.9 2.3E-08 8E-13 91.3 14.7 120 548-677 9-136 (138)
202 2kc7_A BFR218_protein; tetratr 98.9 3.9E-09 1.4E-13 89.6 8.2 90 606-703 4-94 (99)
203 3kae_A CDC27, possible protein 98.9 2.1E-08 7.2E-13 90.9 12.7 140 1-143 1-155 (242)
204 2kc7_A BFR218_protein; tetratr 98.8 6.9E-09 2.4E-13 88.1 7.8 90 572-669 4-94 (99)
205 3ma5_A Tetratricopeptide repea 98.8 1.5E-08 5.2E-13 86.7 10.0 69 598-666 3-71 (100)
206 3ma5_A Tetratricopeptide repea 98.8 9.9E-09 3.4E-13 87.9 8.5 75 631-705 2-76 (100)
207 3ly7_A Transcriptional activat 98.8 1E-07 3.4E-12 100.3 17.4 156 524-704 184-344 (372)
208 3n71_A Histone lysine methyltr 98.8 1.3E-08 4.5E-13 113.0 11.3 127 538-664 313-463 (490)
209 3ly7_A Transcriptional activat 98.8 2.5E-07 8.6E-12 97.3 19.8 148 465-637 195-345 (372)
210 3u64_A Protein TP_0956; tetrat 98.8 2.2E-07 7.6E-12 93.8 18.4 107 562-668 146-272 (301)
211 3n71_A Histone lysine methyltr 98.8 2.5E-08 8.6E-13 110.7 12.6 123 578-700 319-465 (490)
212 3u64_A Protein TP_0956; tetrat 98.7 5.1E-07 1.7E-11 91.2 17.4 108 596-703 146-273 (301)
213 1pc2_A Mitochondria fission pr 98.4 1.1E-06 3.7E-11 80.5 10.6 96 583-678 13-113 (152)
214 1pc2_A Mitochondria fission pr 98.4 1.4E-06 4.9E-11 79.7 11.1 93 550-642 14-111 (152)
215 3bee_A Putative YFRE protein; 98.4 1.3E-06 4.6E-11 73.6 10.1 71 598-668 2-75 (93)
216 3bee_A Putative YFRE protein; 98.4 2.1E-06 7E-11 72.5 10.8 71 564-634 2-75 (93)
217 4g26_A Pentatricopeptide repea 98.3 5E-05 1.7E-09 84.6 23.6 159 540-698 32-203 (501)
218 2v5f_A Prolyl 4-hydroxylase su 98.3 4.1E-06 1.4E-10 72.1 10.4 77 601-677 4-87 (104)
219 2v5f_A Prolyl 4-hydroxylase su 98.2 7.8E-06 2.7E-10 70.3 11.5 77 567-643 4-87 (104)
220 3qww_A SET and MYND domain-con 98.2 3.2E-06 1.1E-10 92.2 10.8 86 546-631 310-411 (433)
221 3qww_A SET and MYND domain-con 98.2 4.6E-06 1.6E-10 91.0 11.2 84 582-665 312-411 (433)
222 4g26_A Pentatricopeptide repea 98.2 0.00028 9.5E-09 78.6 24.8 158 474-631 34-204 (501)
223 3qwp_A SET and MYND domain-con 98.2 5.9E-06 2E-10 90.2 10.8 94 544-637 297-411 (429)
224 3qwp_A SET and MYND domain-con 98.1 6E-06 2E-10 90.2 10.2 104 578-681 297-424 (429)
225 1nzn_A CGI-135 protein, fissio 97.8 0.0001 3.4E-09 65.0 9.8 98 581-678 14-116 (126)
226 1nzn_A CGI-135 protein, fissio 97.8 0.00023 7.8E-09 62.7 11.5 89 619-707 18-111 (126)
227 4h7y_A Dual specificity protei 97.6 0.00067 2.3E-08 61.0 12.7 106 563-669 8-127 (161)
228 4h7y_A Dual specificity protei 97.6 0.001 3.6E-08 59.8 12.8 58 580-637 72-129 (161)
229 3ffl_A Anaphase-promoting comp 97.1 0.003 1E-07 58.1 10.3 115 570-696 22-148 (167)
230 1y8m_A FIS1; mitochondria, unk 96.9 0.011 3.9E-07 52.7 12.6 78 600-677 37-118 (144)
231 1y8m_A FIS1; mitochondria, unk 96.9 0.013 4.4E-07 52.4 12.8 73 567-639 38-114 (144)
232 3o48_A Mitochondria fission 1 96.8 0.0059 2E-07 53.9 9.6 79 601-679 39-121 (134)
233 3o48_A Mitochondria fission 1 96.8 0.0064 2.2E-07 53.7 9.7 77 567-643 39-119 (134)
234 3mkq_A Coatomer beta'-subunit; 96.4 0.17 6E-06 58.9 21.8 97 443-560 610-707 (814)
235 1qsa_A Protein (soluble lytic 96.3 0.36 1.2E-05 54.6 22.7 234 444-698 84-347 (618)
236 3mkq_A Coatomer beta'-subunit; 96.3 0.086 2.9E-06 61.5 18.0 184 474-689 607-802 (814)
237 3txn_A 26S proteasome regulato 96.0 0.12 4E-06 55.1 15.4 91 607-697 104-208 (394)
238 4gns_B Protein CSD3, chitin bi 96.0 0.066 2.3E-06 61.7 14.5 116 479-594 261-397 (754)
239 4gns_B Protein CSD3, chitin bi 95.9 0.051 1.8E-06 62.6 13.4 54 641-694 342-395 (754)
240 3txn_A 26S proteasome regulato 95.9 0.48 1.6E-05 50.3 19.6 92 539-630 104-209 (394)
241 3kae_A CDC27, possible protein 95.8 1.1 3.7E-05 41.0 19.4 75 479-561 15-89 (242)
242 4b4t_P 26S proteasome regulato 95.7 0.75 2.6E-05 49.9 21.1 185 445-631 29-247 (445)
243 2ff4_A Probable regulatory pro 95.0 0.3 1E-05 52.0 14.7 112 574-698 121-233 (388)
244 3mkq_B Coatomer subunit alpha; 94.9 0.39 1.3E-05 44.7 13.3 99 443-559 16-114 (177)
245 2wpv_A GET4, UPF0363 protein Y 94.8 2.3 7.8E-05 43.5 19.9 125 434-558 15-158 (312)
246 4b4t_P 26S proteasome regulato 94.7 3.2 0.00011 44.8 22.2 185 479-665 29-247 (445)
247 3lpz_A GET4 (YOR164C homolog); 94.4 5.2 0.00018 41.1 26.1 26 532-557 134-159 (336)
248 3spa_A Mtrpol, DNA-directed RN 93.9 0.55 1.9E-05 55.4 14.2 99 568-666 127-231 (1134)
249 2ff4_A Probable regulatory pro 93.9 0.66 2.3E-05 49.3 14.1 53 575-627 178-230 (388)
250 4b4t_S RPN3, 26S proteasome re 93.8 0.54 1.9E-05 51.3 13.4 66 568-635 231-303 (523)
251 3mkq_B Coatomer subunit alpha; 93.8 1.4 4.7E-05 41.0 14.2 127 543-695 14-140 (177)
252 1qsa_A Protein (soluble lytic 93.7 5.3 0.00018 45.0 21.8 268 434-711 8-326 (618)
253 3spa_A Mtrpol, DNA-directed RN 93.6 1.2 4E-05 52.7 16.2 96 502-597 129-230 (1134)
254 1zbp_A Hypothetical protein VP 92.7 0.68 2.3E-05 46.0 10.9 119 578-703 7-133 (273)
255 4b4t_S RPN3, 26S proteasome re 92.4 3.7 0.00013 44.8 17.1 125 441-567 145-303 (523)
256 1zbp_A Hypothetical protein VP 92.2 1.9 6.4E-05 42.8 13.3 56 443-498 8-63 (273)
257 1ya0_A SMG-7 transcript varian 92.2 0.53 1.8E-05 51.6 10.4 81 569-649 153-233 (497)
258 1ya0_A SMG-7 transcript varian 91.8 0.74 2.5E-05 50.5 10.9 80 535-614 153-232 (497)
259 4b4t_R RPN7, 26S proteasome re 91.7 0.84 2.9E-05 49.2 11.3 99 466-564 131-238 (429)
260 4fhn_B Nucleoporin NUP120; pro 91.5 10 0.00036 46.1 21.9 205 441-665 821-1050(1139)
261 4b4t_R RPN7, 26S proteasome re 91.4 0.75 2.6E-05 49.6 10.5 97 535-631 132-237 (429)
262 4fhn_B Nucleoporin NUP120; pro 91.2 2.1 7.3E-05 52.2 15.4 141 540-685 818-986 (1139)
263 4ady_A RPN2, 26S proteasome re 90.5 3.6 0.00012 48.3 15.6 249 442-697 384-656 (963)
264 2p58_C Putative type III secre 88.9 2.1 7.3E-05 35.4 8.4 73 14-87 19-92 (116)
265 2wpv_A GET4, UPF0363 protein Y 88.5 23 0.00078 36.0 22.5 82 600-699 132-217 (312)
266 2uwj_G Type III export protein 87.9 2.1 7.3E-05 35.3 7.8 73 14-87 18-91 (115)
267 4ady_A RPN2, 26S proteasome re 83.1 9.7 0.00033 44.7 13.4 244 433-684 414-679 (963)
268 3lpz_A GET4 (YOR164C homolog); 82.0 49 0.0017 33.9 23.9 196 432-698 12-215 (336)
269 1wy6_A Hypothetical protein ST 81.9 22 0.00074 31.4 11.8 34 431-464 6-39 (172)
270 4gq2_M Nucleoporin NUP120; bet 77.9 6 0.0002 47.2 9.8 97 34-130 809-926 (950)
271 2pm7_A Protein WEB1, protein t 73.4 6.7 0.00023 41.5 7.6 110 5-129 159-276 (399)
272 3t5v_B Nuclear mRNA export pro 73.2 4.3 0.00015 43.8 6.2 63 72-134 184-254 (455)
273 3lvg_A Clathrin heavy chain 1; 72.4 0.00022 7.4E-09 76.4 -26.8 192 442-659 64-285 (624)
274 3t5x_A PCI domain-containing p 63.4 7.8 0.00027 36.8 5.1 47 95-141 6-54 (203)
275 4gq2_M Nucleoporin NUP120; bet 62.0 85 0.0029 37.1 14.9 28 672-699 899-926 (950)
276 3esl_A Checkpoint serine/threo 60.3 1.1E+02 0.0039 28.6 14.1 49 584-632 95-145 (202)
277 2ijq_A Hypothetical protein; s 59.0 44 0.0015 30.2 9.0 64 432-495 32-104 (161)
278 3esl_A Checkpoint serine/threo 58.9 1.2E+02 0.0041 28.5 14.0 49 550-598 95-145 (202)
279 3mzk_B Protein transport prote 55.0 52 0.0018 35.1 10.2 110 5-127 166-304 (441)
280 3ax2_A Mitochondrial import re 51.7 13 0.00045 28.8 3.6 29 106-134 22-50 (73)
281 3mv2_A Coatomer subunit alpha; 51.2 1.7E+02 0.0057 29.6 12.6 31 429-459 111-141 (325)
282 2br9_A 14-3-3E, 14-3-3 protein 50.2 1.4E+02 0.0048 28.7 11.5 162 469-630 8-201 (234)
283 2qx5_A Nucleoporin NIC96; mRNA 47.8 2.2E+02 0.0075 32.0 14.3 29 674-703 540-570 (661)
284 4a1g_A Mitotic checkpoint seri 47.2 1.2E+02 0.004 27.1 9.7 46 587-632 84-131 (152)
285 3t5v_B Nuclear mRNA export pro 44.7 68 0.0023 34.3 9.2 28 638-665 222-249 (455)
286 1wy6_A Hypothetical protein ST 44.6 1.7E+02 0.0057 25.9 13.6 53 612-664 101-153 (172)
287 3ax2_A Mitochondrial import re 44.1 50 0.0017 25.6 5.8 33 606-638 21-53 (73)
288 2uwj_G Type III export protein 44.1 1.4E+02 0.0047 24.8 8.6 90 23-132 8-100 (115)
289 2wvi_A Mitotic checkpoint seri 42.0 1.3E+02 0.0045 27.2 9.3 46 587-632 79-126 (164)
290 2w2u_A Hypothetical P60 katani 41.7 31 0.001 27.5 4.4 23 642-664 25-47 (83)
291 2ynq_A ESSB; membrane protein, 41.4 1.1E+02 0.0037 27.5 8.4 80 37-123 10-95 (161)
292 2p58_C Putative type III secre 41.2 1.4E+02 0.0049 24.7 8.2 91 22-132 8-101 (116)
293 2v6y_A AAA family ATPase, P60 40.3 33 0.0011 27.3 4.4 23 642-664 17-39 (83)
294 3ubw_A 14-3-3E, 14-3-3 protein 39.0 2.8E+02 0.0097 27.0 15.0 162 469-630 34-227 (261)
295 2ijq_A Hypothetical protein; s 36.7 1.3E+02 0.0046 27.0 8.4 60 606-665 36-104 (161)
296 3t5x_A PCI domain-containing p 36.5 63 0.0022 30.4 6.6 51 569-619 15-70 (203)
297 2qx5_A Nucleoporin NIC96; mRNA 35.8 4.4E+02 0.015 29.5 14.4 24 639-662 539-564 (661)
298 3mkr_B Coatomer subunit alpha; 34.1 3.8E+02 0.013 27.0 13.2 29 432-460 102-130 (320)
299 1o9d_A 14-3-3-like protein C; 33.1 3.5E+02 0.012 26.3 16.1 28 469-496 11-38 (260)
300 1o9d_A 14-3-3-like protein C; 32.9 3.5E+02 0.012 26.3 13.6 55 439-493 15-73 (260)
301 1om2_A Protein (mitochondrial 31.9 27 0.00092 28.6 2.6 28 106-133 25-52 (95)
302 1wfd_A Hypothetical protein 15 31.1 2.1E+02 0.007 23.0 9.3 26 432-457 15-40 (93)
303 3re2_A Predicted protein; meni 29.0 2.3E+02 0.0079 29.1 9.3 31 566-596 294-324 (472)
304 2w2u_A Hypothetical P60 katani 28.8 2.1E+02 0.0073 22.5 9.0 30 428-457 15-44 (83)
305 3uzd_A 14-3-3 protein gamma; s 28.6 4.1E+02 0.014 25.7 15.3 30 469-498 7-36 (248)
306 4aez_C MAD3, mitotic spindle c 28.5 2.1E+02 0.0071 27.3 8.6 47 586-632 132-180 (223)
307 3snx_A SUSD homolog, putative 28.4 69 0.0024 34.3 6.1 56 78-133 165-223 (460)
308 3re2_A Predicted protein; meni 28.2 2.4E+02 0.0081 29.0 9.2 66 600-665 253-325 (472)
309 2crb_A Nuclear receptor bindin 27.9 84 0.0029 25.4 4.8 26 638-663 17-42 (97)
310 2crb_A Nuclear receptor bindin 27.7 87 0.003 25.3 4.8 23 470-492 19-41 (97)
311 3lvg_A Clathrin heavy chain 1; 27.5 0.55 1.9E-05 50.6 -10.3 168 437-622 149-324 (624)
312 3ph0_C ASCG; type III secretio 26.8 94 0.0032 22.6 4.3 41 15-55 19-60 (61)
313 1om2_A Protein (mitochondrial 26.5 73 0.0025 26.0 4.3 30 607-636 25-54 (95)
314 4a5x_A MITD1, MIT domain-conta 26.3 2.4E+02 0.0083 22.3 9.5 23 434-456 18-40 (86)
315 2npm_A 14-3-3 domain containin 26.1 4.6E+02 0.016 25.5 16.0 23 642-664 203-226 (260)
316 4gq4_A Menin; tumor suppressor 25.8 3.6E+02 0.012 28.2 10.2 44 553-596 283-331 (489)
317 3u84_A Menin; MLL, JUND, ledgf 25.6 4.3E+02 0.015 27.7 10.7 26 535-560 319-344 (550)
318 2wvi_A Mitotic checkpoint seri 24.8 3.2E+02 0.011 24.5 8.9 74 588-667 43-127 (164)
319 3lxu_X Tripeptidyl-peptidase 2 23.6 1.1E+03 0.037 28.9 17.3 80 622-702 1269-1349(1354)
320 4aez_C MAD3, mitotic spindle c 23.3 3.4E+02 0.012 25.7 9.1 76 519-600 96-182 (223)
321 2cfu_A SDSA1; SDS-hydrolase, l 23.1 1.3E+02 0.0046 33.8 7.4 48 468-515 451-498 (658)
322 2cwy_A Hypothetical protein TT 23.0 2.2E+02 0.0076 22.9 6.7 55 608-664 7-67 (94)
323 2v6y_A AAA family ATPase, P60 22.2 2.8E+02 0.0097 21.6 8.3 25 432-456 11-35 (83)
324 4b4t_O 26S proteasome regulato 21.9 3.4E+02 0.012 28.1 9.9 25 537-561 130-154 (393)
325 3lew_A SUSD-like carbohydrate 21.9 1.1E+02 0.0036 33.2 6.0 56 78-133 179-235 (495)
326 2rpa_A Katanin P60 ATPase-cont 21.7 72 0.0025 25.0 3.3 26 470-495 16-41 (78)
327 3u84_A Menin; MLL, JUND, ledgf 21.3 3.6E+02 0.012 28.3 9.1 66 600-665 275-347 (550)
328 4gq4_A Menin; tumor suppressor 20.9 5.8E+02 0.02 26.7 10.6 46 620-665 282-332 (489)
329 2vkj_A TM1634; membrane protei 20.9 93 0.0032 24.9 3.7 45 431-475 52-99 (106)
330 4b4t_O 26S proteasome regulato 20.7 3.7E+02 0.013 27.8 9.8 91 575-665 83-198 (393)
331 2rpa_A Katanin P60 ATPase-cont 20.6 80 0.0027 24.7 3.3 23 641-663 17-39 (78)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-39 Score=369.31 Aligned_cols=484 Identities=17% Similarity=0.113 Sum_probs=398.9
Q ss_pred hHHHHHHHHHHhhccchhhHHHHHhhhhcCCCchhHHHHHHHHhhcCCHHHHHHHHhcC----CCcchhHHHHHHHhhcC
Q 005133 3 GILTDCVQNSLRYFMYRNAIFLCERLCAEFPSEVNLQLLATCYLQNNQAYAAYNILKGT----QMALSRYLFAVACYQMD 78 (713)
Q Consensus 3 ~~l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~~~llA~~~~~~~~~~~A~~~l~~~----~~~~~~~l~A~~~~~l~ 78 (713)
..+..++..+++.+.|+.|+.+.+++....|++...+.+|.+|+..|++.+|..++++. .++.+.+.+|.|+.+.|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 35778999999999999999999999999998888999999999999999999999976 56789999999999999
Q ss_pred ChhHHHHhhCCCCCC-------------CccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcchHHHHHHHhcC
Q 005133 79 LLSEAEAALSPVNEP-------------SAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCMLG 145 (713)
Q Consensus 79 ~~~ea~~~L~~~~~~-------------~~~~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~~~a~~~L~~~~ 145 (713)
++++|+.++...... ....|..+.+++.+|.+|.+.|+.++|+++|+++++.+|..++++..|+.+.
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhh
Confidence 999999999732111 1122445779999999999999999999999999999999999999998775
Q ss_pred CccchhHHHHHhHHHHHHHHhhhcccccccCCCCCCCCccccCCCCCCCCCChhhhhhhhhcccCCCCCCCCCccccccc
Q 005133 146 AAEEATAVFSEAAALCIQKQYLQNGLATQNLYLPNEDRNLVSSKSAGTEDISPRQLKHMQANNLRDIPGNYHGAAVSAAA 225 (713)
Q Consensus 146 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (713)
........ .....+.+..... . .+......
T Consensus 245 ~~~~~~~~-~~~~~l~~~~~~~--~--------------------------~~~~~~~~--------------------- 274 (597)
T 2xpi_A 245 LLTADEEW-DLVLKLNYSTYSK--E--------------------------DAAFLRSL--------------------- 274 (597)
T ss_dssp CSCHHHHH-HHHHHSCTHHHHG--G--------------------------GHHHHHHH---------------------
T ss_pred cccchhHH-HHHHhcCCccccc--c--------------------------hHHHHHHH---------------------
Confidence 44321110 0000000000000 0 00000000
Q ss_pred cCCCCCCCCCCCCccCCCCCCccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccCCccccccCCcccccccc
Q 005133 226 ASQPLNGGPSNASFYNTPSPITTQLSGVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFVDEGKLRKISGR 305 (713)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (713)
+.. +... ....+...
T Consensus 275 --------------~~~---------------~~~~-------------------------------~~~~g~~~----- 289 (597)
T 2xpi_A 275 --------------YML---------------KLNK-------------------------------TSHEDELR----- 289 (597)
T ss_dssp --------------HHT---------------TSCT-------------------------------TTTHHHHH-----
T ss_pred --------------HHH---------------HHHH-------------------------------HcCcchHH-----
Confidence 000 0000 00000000
Q ss_pred ccCCCCCCCcccccccccCCCCCccccccCCCCCCCCcccCCCcCcccccccccccCCcCCCccccccCCCCCCCCcccc
Q 005133 306 LFSDSGPRRSTRLAGEAGANANMSTTTVAGNGTTNSSKYLGGSKLSSVALRSVTLRKGQSWANENIDEGMRNEPFDDSRA 385 (713)
Q Consensus 306 ~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (713)
...+++. .
T Consensus 290 --------~A~~~~~----------------------------------------------------~------------ 297 (597)
T 2xpi_A 290 --------RAEDYLS----------------------------------------------------S------------ 297 (597)
T ss_dssp --------HHHHHHH----------------------------------------------------T------------
T ss_pred --------HHHHHHH----------------------------------------------------H------------
Confidence 0000000 0
Q ss_pred CcCCccccCCCCCCCccccccCCccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCC
Q 005133 386 NTASTVSSSFPTSDTRSAVQEGTTVPIGGTAMNGSRIMTGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT 465 (713)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~ 465 (713)
.. +... +...++..|..+...|++++|+.+|++++...|.+
T Consensus 298 ------------------------------~~---~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 338 (597)
T 2xpi_A 298 ------------------------------IN---GLEK------SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN 338 (597)
T ss_dssp ------------------------------ST---TGGG------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ------------------------------hh---cCCc------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc
Confidence 00 0000 12234556677789999999999999999988999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 545 (713)
..++..++.++...|++++|+..|+++++..|.+...+..++.++...|++++|..+++++++..|.+..+|..+|.+|.
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA 418 (597)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005133 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHF 625 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l 625 (713)
..|++++|+++|+++++..|.+..+|..+|.+|...|++++|+.+|+++++..|.++.+|..+|.+|...|++++|+++|
T Consensus 419 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 626 RMAFQI------SPHS-SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 626 ~kal~~------~p~~-~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
+++++. +|+. ..++..+|.++.+.|++++|+..|+++++..|+++.++..+|.+|...|++++|+.+|+++++
T Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999998 5654 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCChhHHHhccC
Q 005133 699 YAPRESGVYALMGC 712 (713)
Q Consensus 699 l~P~~~~~~~~Lg~ 712 (713)
++|+++.++..||.
T Consensus 579 ~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 579 ISPNEIMASDLLKR 592 (597)
T ss_dssp HCTTCHHHHHHHHH
T ss_pred cCCCChHHHHHHHH
Confidence 99999999998874
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-37 Score=337.30 Aligned_cols=269 Identities=17% Similarity=0.174 Sum_probs=181.0
Q ss_pred HccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 005133 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYL 522 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~ 522 (713)
...|++++|+..|++++...|+...++..+|.++...|++++|++.|+++++.+|.+..++..++.++...|++++|+..
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 005133 523 AQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY 602 (713)
Q Consensus 523 ~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~ 602 (713)
++++++.+|....++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|+++
T Consensus 192 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 271 (388)
T 1w3b_A 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005133 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLS 682 (713)
Q Consensus 603 ~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~ 682 (713)
.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++..|++..++..+|.++..
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 683 LEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 683 ~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
.|++++|+..|+++++++|+++.+++.+|
T Consensus 352 ~g~~~~A~~~~~~a~~~~p~~~~a~~~lg 380 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRISPTFADAYSNMG 380 (388)
T ss_dssp TTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHhHH
Confidence 66666666666666666666666666655
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1e-35 Score=323.08 Aligned_cols=249 Identities=18% Similarity=0.157 Sum_probs=242.7
Q ss_pred HHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 005133 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (713)
Q Consensus 437 ~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~ 516 (713)
..|..+...|++++|+..|++++...|....++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 44566678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (713)
Q Consensus 517 ~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~ 596 (713)
++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|..+.++..+|.++...|++++|+.+|+++++
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005133 597 VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676 (713)
Q Consensus 597 ~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~l 676 (713)
..|.+..++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..|+++++++|+++.+++.+
T Consensus 300 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 005133 677 ANILLSLEK 685 (713)
Q Consensus 677 a~~~~~~g~ 685 (713)
|.++..+|+
T Consensus 380 g~~~~~~~~ 388 (388)
T 1w3b_A 380 GNTLKEMQD 388 (388)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHccC
Confidence 999998874
No 4
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=322.03 Aligned_cols=277 Identities=15% Similarity=0.120 Sum_probs=261.3
Q ss_pred HHHHHHHHHHc---cCCHHHHHHHHHcCcc-----c--C-------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q 005133 434 RILGEGYRMSC---MYRCKDALDVYLKLPH-----K--H-------YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRAS 496 (713)
Q Consensus 434 ~~l~~a~~l~~---~g~~~eAi~~l~~~~~-----~--~-------~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~ 496 (713)
..+..|..++. .|++++|+.+|++++. . . |..+.+++.+|.++...|++++|+.+|+++++.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 267 (514)
T 2gw1_A 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267 (514)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 34455655565 8999999999999877 4 2 4567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 497 PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGH 576 (713)
Q Consensus 497 p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~ 576 (713)
|. ..++..++.++...|++++|...+++++..+|.++.++..+|.++...|++++|+.+|+++++..|.+..++..+|.
T Consensus 268 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 346 (514)
T 2gw1_A 268 PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC 346 (514)
T ss_dssp CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHH
T ss_pred cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH--
Q 005133 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV------IMSYLGTAMHA-- 648 (713)
Q Consensus 577 ~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~------~~~~la~~~~~-- 648 (713)
++...|++++|+.+|+++++..|.++.++..+|.+|...|++++|+.+|+++++..|.+.. ++..+|.++..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 426 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP 426 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999888855 99999999999
Q ss_pred -cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 649 -LKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 649 -~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
.|++++|+.+|++++...|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+.
T Consensus 427 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 427 TVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887654
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-32 Score=310.24 Aligned_cols=273 Identities=15% Similarity=0.212 Sum_probs=261.3
Q ss_pred HHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 005133 439 GYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMK 518 (713)
Q Consensus 439 a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~ 518 (713)
+..+...|++++|+.+|++++.. +.+..++..+|.+|...|++++|++.|+++++.+|.+..++..++.++...|+.++
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHH
Confidence 34456788999999999999887 67899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 005133 519 LSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD 598 (713)
Q Consensus 519 A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~ 598 (713)
|..+++++++..|.+..+|..+|.+|...|++++|+++|+++++.+|.+..+|..+|.+|...|++++|+.+|+++++..
T Consensus 358 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCC-hh
Q 005133 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA------DKKN-PL 671 (713)
Q Consensus 599 p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~------~p~~-~~ 671 (713)
|++..++..+|.+|...|++++|+++|+++++..|.++.++..+|.+|.+.|++++|+.+|+++++. +|+. ..
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 5554 67
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 672 PMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
+|..+|.+|...|++++|+..|+++++..|+++.+|..||.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 558 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 89999999999999999999999999999999999988763
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4.3e-33 Score=314.71 Aligned_cols=269 Identities=16% Similarity=0.130 Sum_probs=248.4
Q ss_pred HHHHHccCCHHHHHHHHHcCcccCCCCHH-------HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 439 GYRMSCMYRCKDALDVYLKLPHKHYNTGW-------VLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (713)
Q Consensus 439 a~~l~~~g~~~eAi~~l~~~~~~~~~~~~-------~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~ 511 (713)
+......|++++|+.+|++++...|.+.. ++..+|.++...|++++|+..|+++++.+|. ..++..+|.++.
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~ 287 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence 33344567899999999999999998754 5888889999999999999999999999999 999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 005133 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSY 591 (713)
Q Consensus 512 ~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~ 591 (713)
..|++++|...++++++.+|.++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc----------CChHHH
Q 005133 592 QSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV------IMSYLGTAMHAL----------KRSGEA 655 (713)
Q Consensus 592 ~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~------~~~~la~~~~~~----------g~~eeA 655 (713)
+++++.+|+++.++..+|.++...|++++|+..|+++++..|.+.. .+..+|.++... |++++|
T Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 9999999999999999999999999999999999999998776543 356778999999 999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHH
Q 005133 656 IEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 656 l~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 708 (713)
+.+|+++++.+|+++.++..+|.+|...|++++|+.+|++++++.|+......
T Consensus 448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999877643
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.98 E-value=2.8e-29 Score=266.72 Aligned_cols=274 Identities=14% Similarity=0.151 Sum_probs=251.3
Q ss_pred HHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC---CCHHHHHHH--------
Q 005133 438 EGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP---YSLEGMDIY-------- 506 (713)
Q Consensus 438 ~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p---~~~~a~~~l-------- 506 (713)
.|..+...|++++|+..|++++...|....++..+|.++...|++++|+..|+++++.+| .+..++..+
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 43 RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHH
Confidence 344456678899999999999988999999999999999999999999999999999999 888887777
Q ss_pred ----HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 507 ----STVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE 582 (713)
Q Consensus 507 ----a~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g 582 (713)
+.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHH
Q 005133 583 DFENGIRSYQSALRVDARHYNSWY------------GLGMVYLRQEKFEFSEHHFRMAFQISPHSSV----IMSYLGTAM 646 (713)
Q Consensus 583 ~~eeAl~~~~~al~~~p~~~~~~~------------~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~----~~~~la~~~ 646 (713)
++++|+..|+++++..|++..++. .+|.++...|++++|+..|+++++..|+++. ++..+|.++
T Consensus 203 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 203 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999888655 3488899999999999999999999999874 466799999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 647 HALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 647 ~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++..++..|+
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887765
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.98 E-value=4e-30 Score=283.86 Aligned_cols=254 Identities=14% Similarity=0.083 Sum_probs=222.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 005133 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (713)
Q Consensus 436 l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~ 515 (713)
+..|..+...|++++|+..|++++...|.+..++..+|.+|...|++++|+..|+++++.+|.+..++..++.++...|+
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34556667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Q 005133 516 DMKLSYLAQELITTDRLAPQSWCAM------------GNCYSLQKDHETALKNFQRAVQLNPRFA----YGHTLCGHEYV 579 (713)
Q Consensus 516 ~~~A~~~~~kal~~~p~~~~~~~~l------------a~~~~~~g~~~~Al~~~~kal~~~p~~~----~a~~~lg~~~~ 579 (713)
+++|+..+++++...|.+...+..+ |.++...|++++|+.+|+++++..|.++ ..+..+|.++.
T Consensus 227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 306 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS 306 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999888766 9999999999999999999999999884 47888999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------------H
Q 005133 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAM------------H 647 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~------------~ 647 (713)
..|++++|+..++++++.+|++..+|..+|.+|...|++++|+..|++++++.|+++.++..++.+. .
T Consensus 307 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~ 386 (450)
T 2y4t_A 307 KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK 386 (450)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGG
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998553 3
Q ss_pred HcC-----ChHHHHHHHHH-HHHhCCCChh----------HHHHHHHHHHHcCCHHHH
Q 005133 648 ALK-----RSGEAIEMMEK-AILADKKNPL----------PMYQKANILLSLEKFDEA 689 (713)
Q Consensus 648 ~~g-----~~eeAl~~l~k-al~~~p~~~~----------~~~~la~~~~~~g~~~eA 689 (713)
.+| +.+++.+.|++ +++..|+... .+..++.+|..+|+.+++
T Consensus 387 ~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp GSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344 56777888886 7777776421 345566666666665544
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.98 E-value=3.1e-30 Score=271.37 Aligned_cols=278 Identities=14% Similarity=0.124 Sum_probs=268.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
.+..|..++..|++++|+.+|++++..+|....++..++.+++..|++++|+..++++++.+|.+..++..+|.++...|
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG 104 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh
Confidence 45667777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 005133 515 -EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQS 593 (713)
Q Consensus 515 -~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~ 593 (713)
++++|...++++++.+|.++.+|..+|.++...|++++|+.+|+++++..|....++..+|.++...|++++|+.+|++
T Consensus 105 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005133 594 ALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS---------PHSSVIMSYLGTAMHALKRSGEAIEMMEKAIL 664 (713)
Q Consensus 594 al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~---------p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~ 664 (713)
+++.+|.+..++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.+|+++++
T Consensus 185 al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 185 ALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264 (330)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999986 66778999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 665 ADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 665 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
..|+++.++..+|.++...|++++|+.+|+++++++|+++.++..||.
T Consensus 265 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 265 LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999988774
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.4e-30 Score=287.09 Aligned_cols=244 Identities=11% Similarity=0.006 Sum_probs=233.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~ 513 (713)
.++..|..+...|++++|+..|++++...|. ..++..+|.++...|++++|+..|++++..+|.+..++..++.++...
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 4556677788999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 005133 514 KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQS 593 (713)
Q Consensus 514 g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~ 593 (713)
|++++|...++++++..|.+..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|++
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005133 594 ALRVDARHYN------SWYGLGMVYLR---QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAIL 664 (713)
Q Consensus 594 al~~~p~~~~------~~~~lg~~y~~---~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~ 664 (713)
++...|++.. ++..+|.++.. .|++++|+..|++++...|+++.++..+|.++...|++++|+.+|+++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999888754 99999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHH
Q 005133 665 ADKKNPLPMYQKAN 678 (713)
Q Consensus 665 ~~p~~~~~~~~la~ 678 (713)
++|+++.++..+..
T Consensus 478 ~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 478 LARTMEEKLQAITF 491 (514)
T ss_dssp HCSSHHHHHHHHHH
T ss_pred hccccHHHHHHHHH
Confidence 99999888876643
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=2.6e-29 Score=277.27 Aligned_cols=272 Identities=14% Similarity=0.153 Sum_probs=218.5
Q ss_pred HHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH---HHHHHH----------
Q 005133 440 YRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL---EGMDIY---------- 506 (713)
Q Consensus 440 ~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~---~a~~~l---------- 506 (713)
..+...|++++|+..|++++...|....++..+|.+|...|++++|+..|+++++.+|.+. .++..+
T Consensus 68 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 147 (450)
T 2y4t_A 68 TVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLR 147 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHH
Confidence 3345567778888888888777787888888888888888888888888888888888776 665544
Q ss_pred --HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 005133 507 --STVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDF 584 (713)
Q Consensus 507 --a~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~ 584 (713)
+.++...|++++|+..++++++..|.+..++..+|.+|...|++++|+.+|+++++.+|.++.++..+|.+|...|++
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 555777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHH
Q 005133 585 ENGIRSYQSALRVDARHYNSWYGL------------GMVYLRQEKFEFSEHHFRMAFQISPHSSV----IMSYLGTAMHA 648 (713)
Q Consensus 585 eeAl~~~~~al~~~p~~~~~~~~l------------g~~y~~~g~~~eA~~~l~kal~~~p~~~~----~~~~la~~~~~ 648 (713)
++|+..|++++..+|++...+..+ |.++...|++++|+.+|+++++..|.++. ++..+|.++.+
T Consensus 228 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 228 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 888888888888888877776655 78888888888888888888888887743 67778888888
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 649 LKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 649 ~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
.|++++|+.+++++++..|+++.++..+|.++...|++++|+.+|+++++++|+++.++..||
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888887777665
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=1.1e-28 Score=262.16 Aligned_cols=281 Identities=10% Similarity=0.036 Sum_probs=266.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~ 511 (713)
+-.++..|..++..|++++|+..|++++...|.++.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 512 HLKEDMKLSYLAQELITTDR---LAPQSWCAM------------GNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGH 576 (713)
Q Consensus 512 ~~g~~~~A~~~~~kal~~~p---~~~~~~~~l------------a~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~ 576 (713)
..|++++|...++++++..| .+..++..+ |.++...|++++|+.+++++++..|.++.++..+|.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999 888888777 789999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHH
Q 005133 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMS------------YLGT 644 (713)
Q Consensus 577 ~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~------------~la~ 644 (713)
++...|++++|+..++++++..|.++.++..+|.+|...|++++|+..|+++++..|++..++. .+|.
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988654 3488
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 645 AMHALKRSGEAIEMMEKAILADKKNPL----PMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 645 ~~~~~g~~eeAl~~l~kal~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
++...|++++|+..|+++++..|+++. ++..+|.++...|++++|+..|+++++.+|+++.+++.+|.
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 899999999999999999999999874 46679999999999999999999999999999999988874
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=1.2e-28 Score=278.24 Aligned_cols=240 Identities=15% Similarity=0.078 Sum_probs=225.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~ 513 (713)
..+..|..+...|++++|+..|++++...|. ..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Confidence 3456677788999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 005133 514 KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQS 593 (713)
Q Consensus 514 g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~ 593 (713)
|++++|+..++++++.+|.++.+|..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|++
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCH------HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005133 594 ALRVDARHY------NSWYGLGMVYLRQ----------EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIE 657 (713)
Q Consensus 594 al~~~p~~~------~~~~~lg~~y~~~----------g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~ 657 (713)
+++..|.+. ..+..+|.++... |++++|+.+|+++++..|++..++..+|.+|...|++++|+.
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 999877543 3466778999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHH
Q 005133 658 MMEKAILADKKNPLPMY 674 (713)
Q Consensus 658 ~l~kal~~~p~~~~~~~ 674 (713)
+|++++++.|.......
T Consensus 484 ~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 484 LFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999998877654
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=5.8e-29 Score=276.76 Aligned_cols=276 Identities=16% Similarity=0.085 Sum_probs=220.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHh---hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEV---VDYLEAERAFTLARRASPYSLEGMDIYSTVLYH 512 (713)
Q Consensus 436 l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~---g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~ 512 (713)
.+.++..+..++|++|+.+|++++..+|+++.++..+|.+++.. +++++|++.|+++++++|.+..++..++..+..
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 34444455677899999999999999999999999999987765 566899999999999999999999988877765
Q ss_pred c----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------
Q 005133 513 L----KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL------- 581 (713)
Q Consensus 513 ~----g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~------- 581 (713)
. +++++|..++++++..+|..+.++..+|.+|...|++++|+..|+++++.+|+++.++..+|.+|...
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhH
Confidence 5 56789999999999999999999999999999999999999999999999999999999999988653
Q ss_pred ------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH-
Q 005133 582 ------------EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV---IMSYLGTA- 645 (713)
Q Consensus 582 ------------g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~---~~~~la~~- 645 (713)
+.+++|+..|++++..+|.+..++..+|.+|...|++++|+.+|++++++.+.+.. ++..+|.+
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999887654 45566654
Q ss_pred HHHcCChHHHHHHHHHHHHh------------------------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 005133 646 MHALKRSGEAIEMMEKAILA------------------------DKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 646 ~~~~g~~eeAl~~l~kal~~------------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P 701 (713)
+...|++++|+..|++++++ +|.++.++..+|.+|..+|++++|+++|++++++.|
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 45779999999999988765 466778999999999999999999999999999999
Q ss_pred CChhHHHhcc
Q 005133 702 RESGVYALMG 711 (713)
Q Consensus 702 ~~~~~~~~Lg 711 (713)
.++.++..+|
T Consensus 462 ~~p~a~~~~G 471 (472)
T 4g1t_A 462 LIPSASSWNG 471 (472)
T ss_dssp ----------
T ss_pred CCCcHhhcCC
Confidence 9999988887
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=4.7e-28 Score=259.59 Aligned_cols=271 Identities=14% Similarity=0.145 Sum_probs=245.8
Q ss_pred HHHccCCHHHHHH-HHHcCcccCCCC----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 005133 441 RMSCMYRCKDALD-VYLKLPHKHYNT----GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (713)
Q Consensus 441 ~l~~~g~~~eAi~-~l~~~~~~~~~~----~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~ 515 (713)
.+...|+|++|+. .|++++...|.+ ...++.+|.+++..|++++|+.+|+++++.+|.+..++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3455789999999 999988777665 45688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHH
Q 005133 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHT----------------LCGHEYV 579 (713)
Q Consensus 516 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~----------------~lg~~~~ 579 (713)
+++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++...|.....+. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999999999998877664 466666
Q ss_pred HccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005133 580 ALEDFENGIRSYQSALRVDAR--HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIE 657 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~~~p~--~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~ 657 (713)
..|++++|+.+|+++++.+|. ++.++..+|.+|...|++++|+.+|+++++..|.++.++..+|.++...|++++|+.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----------hhHHHhccC
Q 005133 658 MMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE-----------SGVYALMGC 712 (713)
Q Consensus 658 ~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~-----------~~~~~~Lg~ 712 (713)
+|++++++.|+++.++..+|.+|...|++++|+.+|++++++.|++ ..+|..||.
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 338 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988 788887763
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=9.3e-28 Score=257.27 Aligned_cols=264 Identities=15% Similarity=0.080 Sum_probs=252.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
.+..|..+...|++++|+..|++++...|..+.+++.+|.++...|++++|+.+|+++++.+|.+..++..++.++...|
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWC----------------AMGNCYSLQKDHETALKNFQRAVQLNPR--FAYGHTLCGH 576 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~----------------~la~~~~~~g~~~~Al~~~~kal~~~p~--~~~a~~~lg~ 576 (713)
++++|+..+++++...|.....+. .++.++ ..|++++|+.+|+++++.+|. .+.++..+|.
T Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 999999999999999999887765 466666 999999999999999999999 8999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005133 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAI 656 (713)
Q Consensus 577 ~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl 656 (713)
++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 305 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 305 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCC-----------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005133 657 EMMEKAILADKKN-----------PLPMYQKANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 657 ~~l~kal~~~p~~-----------~~~~~~la~~~~~~g~~~eA~~~~~kal~l 699 (713)
.+|++++.+.|++ ..+|..+|.++..+|++++|..+++++++.
T Consensus 306 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 306 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9999999999887 899999999999999999999999887765
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=4.5e-28 Score=260.30 Aligned_cols=264 Identities=13% Similarity=0.024 Sum_probs=242.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
++..|..++..|++++|+.+|++++...|.++.+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcc
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWCAM----------GNCYSLQKDHETALKNFQRAVQLNPR--FAYGHTLCGHEYVALE 582 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~~l----------a~~~~~~g~~~~Al~~~~kal~~~p~--~~~a~~~lg~~~~~~g 582 (713)
++++|+..++++++..|....++..+ |.++...|++++|+.+|+++++.+|. ++.++..+|.+|...|
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 99999999999999998876666554 99999999999999999999999999 8999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005133 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKA 662 (713)
Q Consensus 583 ~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~ka 662 (713)
++++|+.+|+++++..|+++.++..+|.+|...|++++|+.+|+++++..|+++.++..+|.+|..+|++++|+.+|+++
T Consensus 228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCC------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 663 ILADKK------------NPLPMYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 663 l~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
+++.|+ ...+|..++.++..+|+.+.|....++.+.
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 308 LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 999876 367899999999999999999887766443
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=4.6e-28 Score=254.38 Aligned_cols=269 Identities=13% Similarity=0.069 Sum_probs=253.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
.+..|..++..|++++|+.+|++++...|....++..+|.++...|++++|+.+|+++++.+|.+..++..++.++...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWCAM--------------GN-CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYV 579 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~~l--------------a~-~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~ 579 (713)
++++|...++++++..|.....+..+ +. ++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 99999999999999999998888777 66 7889999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005133 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMM 659 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l 659 (713)
..|++++|+.+++++++.+|++..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+|
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 005133 660 EKAILADKK------------NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 660 ~kal~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
++++...|+ +..++..+|.++..+|++++|...++++++..|++
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 999999998 78999999999999999999999999888876643
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=4.2e-28 Score=260.53 Aligned_cols=243 Identities=14% Similarity=0.130 Sum_probs=225.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005133 460 HKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCA 539 (713)
Q Consensus 460 ~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~ 539 (713)
...+.....++.+|.+++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.+|..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 138 (365)
T 4eqf_A 59 ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMA 138 (365)
T ss_dssp SCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 33334455699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 005133 540 MGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTL----------CGHEYVALEDFENGIRSYQSALRVDAR--HYNSWYG 607 (713)
Q Consensus 540 la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~----------lg~~~~~~g~~eeAl~~~~~al~~~p~--~~~~~~~ 607 (713)
+|.+|...|++++|+.+|++++++.|....++.. +|.++...|++++|+.+|+++++.+|. ++.++..
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 9999999999999999999999999876655554 499999999999999999999999999 9999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Q 005133 608 LGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFD 687 (713)
Q Consensus 608 lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~ 687 (713)
+|.+|...|++++|+.+|+++++..|.++.++..+|.++...|++++|+.+|++++++.|+++.++..+|.+|..+|+++
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCC
Q 005133 688 EALEVLEELKEYAPR 702 (713)
Q Consensus 688 eA~~~~~kal~l~P~ 702 (713)
+|+.+|++++++.|+
T Consensus 299 ~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 299 EAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999999999987
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=5.1e-27 Score=246.73 Aligned_cols=256 Identities=17% Similarity=0.250 Sum_probs=242.0
Q ss_pred cCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 005133 457 KLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQS 536 (713)
Q Consensus 457 ~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~ 536 (713)
+.+...+.+..++..+|..++..|++++|++.|+++++.+|.+..++..++.++...|++++|..+++++++.+|.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 92 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS 92 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence 44555567778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 537 WCAMGNCYSLQK-DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ 615 (713)
Q Consensus 537 ~~~la~~~~~~g-~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~ 615 (713)
|+.+|.++...| ++++|+.+|+++++.+|.+..+|..+|.++...|++++|+.+|+++++..|++..++..+|.+|...
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---------CCChhHHHHHHHHHHHcCCH
Q 005133 616 EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD---------KKNPLPMYQKANILLSLEKF 686 (713)
Q Consensus 616 g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~---------p~~~~~~~~la~~~~~~g~~ 686 (713)
|++++|+.+|+++++..|.++.++..+|.++...|++++|+.++++++... |..+.++..+|.++...|++
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999986 66788999999999999999
Q ss_pred HHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 687 DEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 687 ~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
++|+.+|++++++.|++..++..+|.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~ 278 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGY 278 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHH
Confidence 99999999999999999999988874
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=9e-28 Score=260.46 Aligned_cols=253 Identities=12% Similarity=0.059 Sum_probs=237.0
Q ss_pred CcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHH
Q 005133 458 LPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE-DMKLSYLAQELITTDRLAPQS 536 (713)
Q Consensus 458 ~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~-~~~A~~~~~kal~~~p~~~~~ 536 (713)
++...|....++..+|.++...|++++|+..|+++++++|.+..+|..+|.++..+|+ +++|+..++++++++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4566778889999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-c
Q 005133 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR-Q 615 (713)
Q Consensus 537 ~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~-~ 615 (713)
|+.+|.++...|++++|+.+|+++++++|++..+|..+|.++...|++++|+.+|+++++++|++..+|+.+|.++.. .
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC----
Q 005133 616 EKFEFS-----EHHFRMAFQISPHSSVIMSYLGTAMHALK--RSGEAIEMMEKAILADKKNPLPMYQKANILLSLE---- 684 (713)
Q Consensus 616 g~~~eA-----~~~l~kal~~~p~~~~~~~~la~~~~~~g--~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g---- 684 (713)
|.+++| +.+|+++++++|++..+|..+|.++...| ++++|++.++++ +.+|+++.++..+|.+|..+|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc
Confidence 555777 59999999999999999999999999988 699999999998 889999999999999999985
Q ss_pred ----C-HHHHHHHHHHH-HHHCCCChhHHHhcc
Q 005133 685 ----K-FDEALEVLEEL-KEYAPRESGVYALMG 711 (713)
Q Consensus 685 ----~-~~eA~~~~~ka-l~l~P~~~~~~~~Lg 711 (713)
+ +++|+.+|+++ ++++|.....|..++
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3 59999999999 999999999988765
No 22
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=4.8e-26 Score=233.33 Aligned_cols=246 Identities=14% Similarity=0.078 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA----PQSWCAMG 541 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~----~~~~~~la 541 (713)
+.+++.+|.+++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++ .|.+ ..+|..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 456788999999999999999999999999999998999999999999999999999999998 4443 34589999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005133 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS 621 (713)
Q Consensus 542 ~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA 621 (713)
.++...|++++|+.+|+++++.+|....++..+|.+|...|++++|+.+|+++++.+|.+..++..+|...+..+++++|
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999555556699999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhC---CCC-----hhHHHHHHHHHHHcCCHHHHH
Q 005133 622 EHHFRMAFQISPHSSVIMSYLGTAMHALKR---SGEAIEMMEKAILAD---KKN-----PLPMYQKANILLSLEKFDEAL 690 (713)
Q Consensus 622 ~~~l~kal~~~p~~~~~~~~la~~~~~~g~---~eeAl~~l~kal~~~---p~~-----~~~~~~la~~~~~~g~~~eA~ 690 (713)
+..|+++++..|++..++..+|.++..+|+ +++|+..|+++++.. |+. ..++..+|.+|...|++++|+
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999 999999999999886 432 267889999999999999999
Q ss_pred HHHHHHHHHCCCChhHHHhccC
Q 005133 691 EVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 691 ~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
.+|+++++++|+++.++-.++.
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHHhcCccHHHHHHHhhh
Confidence 9999999999999999887764
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-25 Score=227.65 Aligned_cols=239 Identities=15% Similarity=0.168 Sum_probs=224.2
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHH
Q 005133 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA-------PQSW 537 (713)
Q Consensus 465 ~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~-------~~~~ 537 (713)
.+..+..+|.+++..|++++|+.+|+++++.+ .+..++..+|.++...|++++|+..++++++..|.. +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 45778899999999999999999999999999 888999999999999999999999999999988876 7899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005133 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK 617 (713)
Q Consensus 538 ~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~ 617 (713)
..+|.++...|++++|+.+|++++.+.|. +.++...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999887 5678888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELK 697 (713)
Q Consensus 618 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal 697 (713)
+++|+.+|+++++..|.++.++..+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++++|+.+|++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHC------CCChhHHHhccC
Q 005133 698 EYA------PRESGVYALMGC 712 (713)
Q Consensus 698 ~l~------P~~~~~~~~Lg~ 712 (713)
++. |++..++..|+.
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHH
T ss_pred HhChhhcCCCchHHHHHHHHH
Confidence 999 998888877653
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.9e-25 Score=248.27 Aligned_cols=226 Identities=10% Similarity=-0.053 Sum_probs=173.2
Q ss_pred HccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------
Q 005133 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL--------- 513 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~--------- 513 (713)
...+++++|+.+|++++...|....++..+|.+|...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 224 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 224 EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred ----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH-HH
Q 005133 514 ----------KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAY---GHTLCGHE-YV 579 (713)
Q Consensus 514 ----------g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~---a~~~lg~~-~~ 579 (713)
+..++|...++++++.+|....++..+|.+|...|++++|+.+|++++.+.+.+.. ++..+|.+ +.
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 23677889999999999999999999999999999999999999999999887653 35566654 45
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005133 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMM 659 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l 659 (713)
..|++++|+..|++++++.|+...... ....+...+++++..+|.++.++..+|.+|...|++++|+++|
T Consensus 384 ~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp TSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 789999999999999999999765432 2345677888999999999999999999999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHH
Q 005133 660 EKAILADKKNPLPMYQKAN 678 (713)
Q Consensus 660 ~kal~~~p~~~~~~~~la~ 678 (713)
++|+++.|.+|.+...+|.
T Consensus 454 ~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 454 ERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp -------------------
T ss_pred HHHHhcCCCCCcHhhcCCC
Confidence 9999999999988887763
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=1.9e-25 Score=234.32 Aligned_cols=248 Identities=14% Similarity=0.158 Sum_probs=233.1
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCY 544 (713)
Q Consensus 465 ~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~ 544 (713)
....++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|...++++++.+|.+..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 545 SLQKDHETALKNFQRAVQLNPRFAYGHTLC--------------GH-EYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (713)
Q Consensus 545 ~~~g~~~~Al~~~~kal~~~p~~~~a~~~l--------------g~-~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg 609 (713)
...|++++|+.+|+++++..|.....+..+ +. ++...|++++|+.+++++++..|.+..++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 999999999999999999999988777776 66 688999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Q 005133 610 MVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEA 689 (713)
Q Consensus 610 ~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA 689 (713)
.+|...|++++|+.+++++++..|.++.++..+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++++|
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCC------------ChhHHHhccC
Q 005133 690 LEVLEELKEYAPR------------ESGVYALMGC 712 (713)
Q Consensus 690 ~~~~~kal~l~P~------------~~~~~~~Lg~ 712 (713)
+.+|++++++.|+ +..+|..+|.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence 9999999999999 7788877663
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=7.2e-26 Score=245.50 Aligned_cols=247 Identities=10% Similarity=-0.022 Sum_probs=232.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVD-YLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 436 l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~-~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
...|..+...|++++|+..|++++..+|.+..+|+.+|.++..+|+ +++|+.+|+++++++|.+..+|..+|.++..+|
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g 180 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR 180 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc
Confidence 3455666889999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHH-----H
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA-LEDFENG-----I 588 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~-~g~~eeA-----l 588 (713)
++++|+..++++++++|.+..+|+.+|.++...|++++|+.+|+++++++|.+..+|+.+|.++.. .|.+++| +
T Consensus 181 ~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el 260 (382)
T 2h6f_A 181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 260 (382)
T ss_dssp CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 5655777 5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------ChHHHHH
Q 005133 589 RSYQSALRVDARHYNSWYGLGMVYLRQE--KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK---------RSGEAIE 657 (713)
Q Consensus 589 ~~~~~al~~~p~~~~~~~~lg~~y~~~g--~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g---------~~eeAl~ 657 (713)
.+|++++.++|++..+|+.+|.++...| ++++|++.++++ +.+|++..++..+|.+|.++| .+++|+.
T Consensus 261 ~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 261 QYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 9999999999999999999999999988 699999999998 999999999999999999985 2599999
Q ss_pred HHHHH-HHhCCCChhHHHHHHHHHHHc
Q 005133 658 MMEKA-ILADKKNPLPMYQKANILLSL 683 (713)
Q Consensus 658 ~l~ka-l~~~p~~~~~~~~la~~~~~~ 683 (713)
+|+++ ++++|.....|..++..+..+
T Consensus 340 ~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 340 LCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99999 999999999999999887654
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=1.3e-24 Score=227.10 Aligned_cols=262 Identities=10% Similarity=0.037 Sum_probs=236.1
Q ss_pred HHHHHccCCHHHHHHHHHcCcccCCCC-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 005133 439 GYRMSCMYRCKDALDVYLKLPHKHYNT-GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDM 517 (713)
Q Consensus 439 a~~l~~~g~~~eAi~~l~~~~~~~~~~-~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~ 517 (713)
...++..|+|.+|+..++++....|.+ ......++++|+..|++++|+..++.. +|....++..++..+...++.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHH
Confidence 345567899999999999988877776 457788999999999999999988762 5666778888999999999999
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 518 KLSYLAQELITT--DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (713)
Q Consensus 518 ~A~~~~~kal~~--~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al 595 (713)
+|+..+++++.. +|+++.+++.+|.++...|++++|+++|++ |.+..++..+|.+|..+|++++|+..|++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999876 699999999999999999999999999998 8899999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005133 596 RVDARHYNSWYGLG--MVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (713)
Q Consensus 596 ~~~p~~~~~~~~lg--~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~ 673 (713)
+.+|++.......+ .++...|++++|+..|+++++..|+++.++..+|.++..+|++++|+..|+++++.+|+++.++
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999875554444 3344558999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHCCCChhHHH
Q 005133 674 YQKANILLSLEKFDE-ALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 674 ~~la~~~~~~g~~~e-A~~~~~kal~l~P~~~~~~~ 708 (713)
.++|.++...|++++ +..+++++++++|+++.+.-
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999976 57899999999999987754
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=5.3e-25 Score=219.65 Aligned_cols=195 Identities=21% Similarity=0.168 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 501 EGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA 580 (713)
Q Consensus 501 ~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~ 580 (713)
.++..+|.++...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444555555555555555555555555555555555555555555555
Q ss_pred c-----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 581 L-----------EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL 649 (713)
Q Consensus 581 ~-----------g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 649 (713)
. |++++|+..|+++++++|+++.++..+|.+|...|++++|+..|+++++++ +++.++..+|.++...
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~ 164 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSM 164 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc
Confidence 5 666666666666666666666666666666666667777777777666666 6666666677777666
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 650 KRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 650 g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++
T Consensus 165 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 165 GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777776666666666666777776777777766666654
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=5.6e-25 Score=219.47 Aligned_cols=200 Identities=17% Similarity=0.155 Sum_probs=179.0
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 463 YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGN 542 (713)
Q Consensus 463 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~ 542 (713)
|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 543 CYSLQ-----------KDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMV 611 (713)
Q Consensus 543 ~~~~~-----------g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~ 611 (713)
++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005133 612 YLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 612 y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal 663 (713)
|...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998764
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=7.2e-23 Score=229.80 Aligned_cols=254 Identities=15% Similarity=0.100 Sum_probs=195.8
Q ss_pred cCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCH
Q 005133 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFE----VVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH----LKED 516 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~----~g~~ 516 (713)
.+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+++|+++.+. .+..++..++.++.. .+++
T Consensus 164 ~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 44667777777766554 467778888888887 78888888888888765 457778888888876 6778
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----cCHHHH
Q 005133 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSL----QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL-----EDFENG 587 (713)
Q Consensus 517 ~~A~~~~~kal~~~p~~~~~~~~la~~~~~----~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~-----g~~eeA 587 (713)
++|+.+++++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|
T Consensus 240 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 240 TQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 8888888887765 457778888888887 78888888888888754 5677888888888877 788888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 005133 588 IRSYQSALRVDARHYNSWYGLGMVYLRQE---KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA----LKRSGEAIEMME 660 (713)
Q Consensus 588 l~~~~~al~~~p~~~~~~~~lg~~y~~~g---~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~----~g~~eeAl~~l~ 660 (713)
+.+|+++++. .++.+++.+|.+|...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+
T Consensus 316 ~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 316 ISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8888888775 45678888888887765 778888888888776 567788888888888 788888888888
Q ss_pred HHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCC---ChhHHHhccC
Q 005133 661 KAILADKKNPLPMYQKANILLS----LEKFDEALEVLEELKEYAPR---ESGVYALMGC 712 (713)
Q Consensus 661 kal~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~kal~l~P~---~~~~~~~Lg~ 712 (713)
++++.. ++.+++.+|.+|.. .+++++|+.+|+++++..|+ ++.+...||.
T Consensus 392 ~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 392 KAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp HHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred HHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 887753 57788888888887 78888888888888888743 6777776664
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=4.7e-25 Score=225.93 Aligned_cols=250 Identities=12% Similarity=0.124 Sum_probs=226.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS----LEGMDIYSTV 509 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~----~~a~~~la~~ 509 (713)
..+..|..++..|++++|+..|+++++..|.++.+++.+|.+++..|++++|+..|+++++ .|.+ ..++..+|.+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 3567888899999999999999999999999999999999999999999999999999999 4433 4568999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 005133 510 LYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIR 589 (713)
Q Consensus 510 l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~ 589 (713)
+...|++++|+..++++++.+|.++.+|..+|.+|...|++++|+.+|+++++.+|.+..++..+|......+++++|+.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999944555669999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCChHHHHHH
Q 005133 590 SYQSALRVDARHYNSWYGLGMVYLRQEK---FEFSEHHFRMAFQIS---PHS-----SVIMSYLGTAMHALKRSGEAIEM 658 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~y~~~g~---~~eA~~~l~kal~~~---p~~-----~~~~~~la~~~~~~g~~eeAl~~ 658 (713)
+|+++++.+|++..++..+|.++...|+ +++|+..|+++++.. |+. ..++..+|.+|...|++++|+.+
T Consensus 164 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999 999999999999885 442 36888999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcC
Q 005133 659 MEKAILADKKNPLPMYQKANILLSLE 684 (713)
Q Consensus 659 l~kal~~~p~~~~~~~~la~~~~~~g 684 (713)
|+++++++|+++.++..++.+....+
T Consensus 244 ~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 244 WKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999998887766544
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-24 Score=219.29 Aligned_cols=238 Identities=17% Similarity=0.133 Sum_probs=225.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC-------HHHHHH
Q 005133 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS-------LEGMDI 505 (713)
Q Consensus 433 l~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~-------~~a~~~ 505 (713)
..++..|..++..|++++|+.+|++++... .++.+++.+|.++...|++++|+.+|+++++.+|.. ..++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 356677888899999999999999998888 889999999999999999999999999999999876 789999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 005133 506 YSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFE 585 (713)
Q Consensus 506 la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~e 585 (713)
+|.++...|++++|+..++++++..|. +.++...|++++|+..+++++..+|....++..+|.++...|+++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999987 567888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 586 NGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 586 eAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
+|+.+|++++..+|.+..++..+|.+|...|++++|+.+|+++++..|+++.++..+|.++...|++++|+.+|++++++
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C------CCChhHHHHHHHH
Q 005133 666 D------KKNPLPMYQKANI 679 (713)
Q Consensus 666 ~------p~~~~~~~~la~~ 679 (713)
. |.+..++..++.+
T Consensus 237 ~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 237 DAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHTTTTHHHHHHHHHHT
T ss_pred ChhhcCCCchHHHHHHHHHh
Confidence 9 8888888777765
No 33
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=1.9e-24 Score=234.04 Aligned_cols=270 Identities=16% Similarity=0.197 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCC----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------CCCCHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT----GWVLSQVGKAYFEVVDYLEAERAFTLARRA------SPYSLE 501 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~----~~~~~~lg~~~~~~g~~~eA~~~~~kal~~------~p~~~~ 501 (713)
....+..|..++..|++++|+.+|++++...|.+ ..++..+|.+++..|++++|+.+|++++.. .|....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3456778889999999999999999999888877 468999999999999999999999999887 344577
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 005133 502 GMDIYSTVLYHLKEDMKLSYLAQELITTDRLA------PQSWCAMGNCYSLQKD--------------------HETALK 555 (713)
Q Consensus 502 a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~------~~~~~~la~~~~~~g~--------------------~~~Al~ 555 (713)
++..+|.++...|++++|...++++++..+.. ..++..+|.+|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 88999999999999999999999999886643 4589999999999999 999999
Q ss_pred HHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHH
Q 005133 556 NFQRAVQL------NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY------NSWYGLGMVYLRQEKFEFSEH 623 (713)
Q Consensus 556 ~~~kal~~------~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~------~~~~~lg~~y~~~g~~~eA~~ 623 (713)
++++++.+ .+....++..+|.++...|++++|+.+|++++++.+... .++..+|.+|...|++++|+.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99999887 333456889999999999999999999999998865433 389999999999999999999
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHH
Q 005133 624 HFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALE 691 (713)
Q Consensus 624 ~l~kal~~~p~~------~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 691 (713)
++++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999887655 6688999999999999999999999999885543 5688999999999999999999
Q ss_pred HHHHHHHHCC
Q 005133 692 VLEELKEYAP 701 (713)
Q Consensus 692 ~~~kal~l~P 701 (713)
+|++++++.+
T Consensus 329 ~~~~al~~~~ 338 (406)
T 3sf4_A 329 FAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998744
No 34
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=2.8e-24 Score=234.23 Aligned_cols=272 Identities=17% Similarity=0.190 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCH----HHHHHHHHHHHHhhcHHHHHHHHHHHHHh------CCCCHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTG----WVLSQVGKAYFEVVDYLEAERAFTLARRA------SPYSLE 501 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~----~~~~~lg~~~~~~g~~~eA~~~~~kal~~------~p~~~~ 501 (713)
....+..|..++..|++++|+.+|++++...|.+. .++..+|.+|+..|++++|+.+|+++++. .+....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44566788889999999999999999999888876 58999999999999999999999999988 566788
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 005133 502 GMDIYSTVLYHLKEDMKLSYLAQELITT------DRLAPQSWCAMGNCYSLQKD-----------------HETALKNFQ 558 (713)
Q Consensus 502 a~~~la~~l~~~g~~~~A~~~~~kal~~------~p~~~~~~~~la~~~~~~g~-----------------~~~Al~~~~ 558 (713)
++..+|.++...|++++|..+++++++. .+....++..+|.+|...|+ +++|+.+++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999988 45566799999999999999 999999999
Q ss_pred HHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 559 RAVQLN------PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYGLGMVYLRQEKFEFSEHHFR 626 (713)
Q Consensus 559 kal~~~------p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~------~~~~~~lg~~y~~~g~~~eA~~~l~ 626 (713)
+++++. +....++..+|.+|...|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|+
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 998863 2345688999999999999999999999999987643 2388999999999999999999999
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 627 MAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLE 694 (713)
Q Consensus 627 kal~~~p~~------~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~ 694 (713)
+++...+.. ..++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.+|..+|++++|+.+|+
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999987644 5688999999999999999999999999885432 4588999999999999999999999
Q ss_pred HHHHHCCCC
Q 005133 695 ELKEYAPRE 703 (713)
Q Consensus 695 kal~l~P~~ 703 (713)
+++++.+..
T Consensus 368 ~al~~~~~~ 376 (411)
T 4a1s_A 368 QHLQLAXXX 376 (411)
T ss_dssp HHHHHCCHH
T ss_pred HHHHHHhhc
Confidence 999987653
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=2e-23 Score=209.59 Aligned_cols=218 Identities=17% Similarity=0.156 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 545 (713)
+..++.+|.+++..|++++|+.+|+++++.+|.+..++..++.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 44556666666666666666666666666666665555555555555555555555555555555555666666666666
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005133 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHF 625 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l 625 (713)
..|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+..|
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005133 626 RMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSL 683 (713)
Q Consensus 626 ~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~ 683 (713)
+++++..|.+..++..+|.++...|++++|+.+|+++++.+|+++.++..++.+....
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 6666666666666666666666666666666666666666666666666665554433
No 36
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=3.6e-24 Score=224.28 Aligned_cols=272 Identities=16% Similarity=0.197 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCC----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------CCCCHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT----GWVLSQVGKAYFEVVDYLEAERAFTLARRA------SPYSLE 501 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~----~~~~~~lg~~~~~~g~~~eA~~~~~kal~~------~p~~~~ 501 (713)
...++..|..++..|++++|+.+|++++...|.+ ..++..+|.++...|++++|+.+|++++.. .+....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 4566778999999999999999999999888887 578899999999999999999999999887 445577
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 005133 502 GMDIYSTVLYHLKEDMKLSYLAQELITTDRLA------PQSWCAMGNCYSLQKD--------------------HETALK 555 (713)
Q Consensus 502 a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~------~~~~~~la~~~~~~g~--------------------~~~Al~ 555 (713)
++..+|.++...|++++|...++++++..+.. ..++..+|.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 88999999999999999999999999876543 3488999999999999 999999
Q ss_pred HHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 005133 556 NFQRAVQL------NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYGLGMVYLRQEKFEFSEH 623 (713)
Q Consensus 556 ~~~kal~~------~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~------~~~~~~lg~~y~~~g~~~eA~~ 623 (713)
++++++.+ .+....++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++|+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999876 23335678999999999999999999999999875432 3489999999999999999999
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHH
Q 005133 624 HFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALE 691 (713)
Q Consensus 624 ~l~kal~~~p~~------~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 691 (713)
++++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 999999886654 6688999999999999999999999999875532 4578899999999999999999
Q ss_pred HHHHHHHHCCCC
Q 005133 692 VLEELKEYAPRE 703 (713)
Q Consensus 692 ~~~kal~l~P~~ 703 (713)
+|++++++.+..
T Consensus 325 ~~~~a~~~~~~~ 336 (338)
T 3ro2_A 325 FAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=5e-23 Score=206.60 Aligned_cols=214 Identities=16% Similarity=0.152 Sum_probs=190.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 499 SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEY 578 (713)
Q Consensus 499 ~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~ 578 (713)
....+..+|.++...|++++|..+++++++.+|.+..++..+|.++...|++++|+.+|+++++.+|....++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005133 579 VALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEM 658 (713)
Q Consensus 579 ~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~ 658 (713)
...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+.+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 659 MEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 659 l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
|++++...|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988764
No 38
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=2.2e-21 Score=217.69 Aligned_cols=256 Identities=14% Similarity=0.093 Sum_probs=222.1
Q ss_pred HHHHHHHc----cCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 437 GEGYRMSC----MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFE----VVDYLEAERAFTLARRASPYSLEGMDIYST 508 (713)
Q Consensus 437 ~~a~~l~~----~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~kal~~~p~~~~a~~~la~ 508 (713)
..|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .+..++..++.
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 263 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 34444455 79999999999998765 467899999999997 89999999999999876 56889999999
Q ss_pred HHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 509 VLYH----LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQ-----KDHETALKNFQRAVQLNPRFAYGHTLCGHEYV 579 (713)
Q Consensus 509 ~l~~----~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~-----g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~ 579 (713)
++.. .++.++|+.+++++.+. .++.+++.+|.+|... +++++|+.+|+++++. .++.+++.+|.+|.
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYF 339 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Confidence 9998 89999999999999875 5789999999999998 9999999999999986 46789999999999
Q ss_pred Hcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 005133 580 ALE---DFENGIRSYQSALRVDARHYNSWYGLGMVYLR----QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA---- 648 (713)
Q Consensus 580 ~~g---~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~---- 648 (713)
..| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.++..+|.+|..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred hCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCC
Confidence 866 899999999999987 679999999999999 89999999999999986 468999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhH
Q 005133 649 LKRSGEAIEMMEKAILADKK---NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGV 706 (713)
Q Consensus 649 ~g~~eeAl~~l~kal~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 706 (713)
.+++++|+.+|+++++..|+ ++.+...++.++.. +.+.|.....+.++..|+...+
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~ 474 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWA 474 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999954 88889999888764 4456666666666666654443
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=4.9e-22 Score=204.52 Aligned_cols=237 Identities=16% Similarity=0.165 Sum_probs=219.5
Q ss_pred CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHH
Q 005133 462 HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH----LKEDMKLSYLAQELITTDRLAPQSW 537 (713)
Q Consensus 462 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~----~g~~~~A~~~~~kal~~~p~~~~~~ 537 (713)
.|.++.+++.+|.++...|++++|+.+|+++++ |.+..++..+|.++.. .+++++|+.+++++++.. ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 467889999999999999999999999999998 7889999999999999 999999999999999985 79999
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 538 CAMGNCYSL----QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA----LEDFENGIRSYQSALRVDARHYNSWYGLG 609 (713)
Q Consensus 538 ~~la~~~~~----~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~----~g~~eeAl~~~~~al~~~p~~~~~~~~lg 609 (713)
+.+|.+|.. .+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.. +..+++.+|
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 999999999 999999999999999874 88999999999999 999999999999999976 688999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005133 610 MVYLR----QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA----LKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (713)
Q Consensus 610 ~~y~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~----~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~ 681 (713)
.+|.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++..+ +.+++.+|.+|.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 99999 99999999999999987 468899999999999 9999999999999999865 889999999999
Q ss_pred H----cCCHHHHHHHHHHHHHHCCCChhHHHhc
Q 005133 682 S----LEKFDEALEVLEELKEYAPRESGVYALM 710 (713)
Q Consensus 682 ~----~g~~~eA~~~~~kal~l~P~~~~~~~~L 710 (713)
. .+++++|+.+|++++++.|+++..++..
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 262 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGACDILKQ 262 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9 9999999999999999999877666543
No 40
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=7.7e-23 Score=197.28 Aligned_cols=179 Identities=14% Similarity=0.152 Sum_probs=171.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 532 LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMV 611 (713)
Q Consensus 532 ~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~ 611 (713)
+.+.+|+.+|.+|...|++++|+.+|+++++++|+++.++..+|.+|...|++++|+..+++++...|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Q 005133 612 YLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALE 691 (713)
Q Consensus 612 y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 691 (713)
+...++++.|+..+.+++...|.+..++..+|.++..+|++++|+..|+++++++|.++.++..+|.+|..+|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCChhHHHhccC
Q 005133 692 VLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 692 ~~~kal~l~P~~~~~~~~Lg~ 712 (713)
+|+++++++|++ +.+.||+
T Consensus 163 ~~~~al~~~p~~--a~~~lal 181 (184)
T 3vtx_A 163 YFKKALEKEEKK--AKYELAL 181 (184)
T ss_dssp HHHHHHHTTHHH--HHHCSCC
T ss_pred HHHHHHhCCccC--HHHHHHh
Confidence 999999999975 4566765
No 41
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=2e-21 Score=220.26 Aligned_cols=220 Identities=7% Similarity=-0.035 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Q 005133 483 LEAERAFTLARRASPYSLEGMDIYSTVLYH-------LKEDM-------KLSYLAQELIT-TDRLAPQSWCAMGNCYSLQ 547 (713)
Q Consensus 483 ~eA~~~~~kal~~~p~~~~a~~~la~~l~~-------~g~~~-------~A~~~~~kal~-~~p~~~~~~~~la~~~~~~ 547 (713)
+.|+..|++++...|.++.+|..++..+.. .|+.+ +|...++++++ ..|++..+|..+|.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 588899999999999999999999999986 78876 89999999997 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHH
Q 005133 548 KDHETALKNFQRAVQLNPRFA-YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMV-YLRQEKFEFSEHHF 625 (713)
Q Consensus 548 g~~~~Al~~~~kal~~~p~~~-~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~-y~~~g~~~eA~~~l 625 (713)
|++++|...|+++++..|.++ .+|..+|.++...|++++|+.+|+++++..|.....+...+.+ +...|++++|..+|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999999999999885 6999999999999999999999999999999888887777766 44689999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 005133 626 RMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPL----PMYQKANILLSLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 626 ~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~kal~l~P 701 (713)
+++++..|+++.+|..++.++...|++++|+.+|++++...|.++. +|...+......|+.+.+..++.++++..|
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999998776655 788888889999999999999999999998
Q ss_pred C
Q 005133 702 R 702 (713)
Q Consensus 702 ~ 702 (713)
+
T Consensus 495 ~ 495 (530)
T 2ooe_A 495 E 495 (530)
T ss_dssp H
T ss_pred h
Confidence 5
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.91 E-value=2.8e-23 Score=212.56 Aligned_cols=246 Identities=13% Similarity=0.028 Sum_probs=219.1
Q ss_pred HccCCHHHHHHHHHcCccc----CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 005133 443 SCMYRCKDALDVYLKLPHK----HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMK 518 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~----~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~ 518 (713)
...|++++|+..|++++.. .|..+.+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 3457899999999998876 345788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 005133 519 LSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD 598 (713)
Q Consensus 519 A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~ 598 (713)
|+.+++++++.+|.++.++..+|.+|...|++++|+.+|+++++..|.+......++.. ...|++++|+..+++++...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999998776666644 66799999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005133 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS----SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (713)
Q Consensus 599 p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~----~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~ 674 (713)
|.+...+. ++.++...+++++|+..+++++...|.. ..++..+|.++...|++++|+.+|++++..+|++...+
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~- 252 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH- 252 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH-
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH-
Confidence 98766654 7888888999999999999998876643 67899999999999999999999999999999775544
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 005133 675 QKANILLSLEKFDEALEVL 693 (713)
Q Consensus 675 ~la~~~~~~g~~~eA~~~~ 693 (713)
+.++..+|++++|+..|
T Consensus 253 --~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 --RYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHhhHHHH
Confidence 77889999999999887
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=6.9e-22 Score=195.30 Aligned_cols=215 Identities=16% Similarity=0.186 Sum_probs=141.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 462 HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMG 541 (713)
Q Consensus 462 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 541 (713)
.|..+.+++.+|.+++..|++++|+++|+++++.+|.+ ..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------~~~~~~l~ 49 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN----------------------------------ELAWLVRA 49 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------HHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc----------------------------------hHHHHHHH
Confidence 34455556666666666666666666666665555554 45555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCH
Q 005133 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL-EDFENGIRSYQSALR--VDARHYNSWYGLGMVYLRQEKF 618 (713)
Q Consensus 542 ~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~-g~~eeAl~~~~~al~--~~p~~~~~~~~lg~~y~~~g~~ 618 (713)
.++...|++++|+.+|+++++..|.+..++..+|.++... |++++|+.+|+++++ ..|.+..++..+|.++...|++
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 6666666666666666666666666666666666666666 666666666666666 4455566666777777777777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 619 EFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK-KNPLPMYQKANILLSLEKFDEALEVLEELK 697 (713)
Q Consensus 619 ~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~kal 697 (713)
++|+.+|+++++..|.+..++..+|.++...|++++|+.+++++++..| .+..++..++.++...|++++|..+++.+.
T Consensus 130 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 7777777777777777667777777777777777777777777777776 666666666777777777777777777777
Q ss_pred HHCCCChhHHHhc
Q 005133 698 EYAPRESGVYALM 710 (713)
Q Consensus 698 ~l~P~~~~~~~~L 710 (713)
+..|+++.++..+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 7777776666554
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=3.2e-22 Score=202.52 Aligned_cols=215 Identities=14% Similarity=0.104 Sum_probs=124.8
Q ss_pred cCCCC-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005133 461 KHYNT-GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCA 539 (713)
Q Consensus 461 ~~~~~-~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~ 539 (713)
.+|.. +.+++.+|.++...|++++|+.+|+++++.+|.+..++..++.++...|++++|...
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~----------------- 93 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE----------------- 93 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-----------------
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHH-----------------
Confidence 34444 677888888888888888888888888877776655555555555555555555544
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Q 005133 540 MGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR--VDARHYNSWYGLGMVYLRQEK 617 (713)
Q Consensus 540 la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~--~~p~~~~~~~~lg~~y~~~g~ 617 (713)
|+++++.+|.+..++..+|.++...|++++|+.+|++++. ..|.+..++..+|.++...|+
T Consensus 94 -----------------~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 156 (252)
T 2ho1_A 94 -----------------YRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK 156 (252)
T ss_dssp -----------------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC
T ss_pred -----------------HHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC
Confidence 4444444444445555555555555555555555555554 444445555555555555555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005133 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELK 697 (713)
Q Consensus 618 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal 697 (713)
+++|+.+|+++++..|.+..++..+|.++...|++++|+.+|+++++..|.+..++..++.++...|++++|..++++++
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHCCCChhHHHh
Q 005133 698 EYAPRESGVYAL 709 (713)
Q Consensus 698 ~l~P~~~~~~~~ 709 (713)
+..|+++.++..
T Consensus 237 ~~~p~~~~~~~~ 248 (252)
T 2ho1_A 237 RLYPGSLEYQEF 248 (252)
T ss_dssp HHCTTSHHHHHH
T ss_pred HHCCCCHHHHHH
Confidence 555555554443
No 45
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=1.3e-21 Score=204.52 Aligned_cols=245 Identities=7% Similarity=-0.057 Sum_probs=216.9
Q ss_pred HHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Q 005133 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA--SPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 437 ~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~--~p~~~~a~~~la~~l~~~g 514 (713)
..+..++..|++++|+..++.. .+....++..++..+...+++++|++.+++++.. +|++..++..+|.++...|
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 3455678899999999988663 4446778889999999999999999999999986 5999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHccCHHHHHHHHH
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG--HEYVALEDFENGIRSYQ 592 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg--~~~~~~g~~eeAl~~~~ 592 (713)
++++|+..+++ |.+..++..+|.+|..+|++++|++.|+++++.+|+........+ .++...|++++|+.+|+
T Consensus 116 ~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~ 190 (291)
T 3mkr_A 116 NPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQ 190 (291)
T ss_dssp CHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred CHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999988 899999999999999999999999999999999999875554444 33445689999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHhCCCChh
Q 005133 593 SALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGE-AIEMMEKAILADKKNPL 671 (713)
Q Consensus 593 ~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ee-Al~~l~kal~~~p~~~~ 671 (713)
++++..|+++.+++.+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++ +..+++++++++|+++.
T Consensus 191 ~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 191 EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999976 57899999999999997
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 005133 672 PMYQKANILLSLEKFDEALEVL 693 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~~ 693 (713)
+. .+..+.+.|++|..-|
T Consensus 271 ~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 271 IK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HH----HHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHc
Confidence 75 3455666666666554
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=1.5e-21 Score=192.88 Aligned_cols=206 Identities=10% Similarity=-0.069 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH 512 (713)
Q Consensus 433 l~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~ 512 (713)
..++..|..+...|++++|+..|++++...|....++..+|.++...|++++|+++|+++++.+|.+..++..++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999888776666555555555
Q ss_pred c-cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 005133 513 L-KEDMKLSYLAQELIT--TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIR 589 (713)
Q Consensus 513 ~-g~~~~A~~~~~kal~--~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~ 589 (713)
. |++++|...++++++ ..|....++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 5 555555555555555 3333344444445555445555555555544444444444444444444444444444444
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005133 590 SYQSALRVDA-RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVI 638 (713)
Q Consensus 590 ~~~~al~~~p-~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~ 638 (713)
+++++++..| .+...+..++.++...|++++|..+++.+++..|+++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 4444444444 444444444444444444444444444444444444443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=7e-22 Score=199.95 Aligned_cols=208 Identities=10% Similarity=-0.056 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~ 511 (713)
...++..|..+...|++++|+..|++++...|....++..+|.++...|++++|+++|+++++.+|.+..++..++.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 45567778888999999999999999999999999999999999999999999999999999998887766666666666
Q ss_pred HccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 005133 512 HLKEDMKLSYLAQELIT--TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIR 589 (713)
Q Consensus 512 ~~g~~~~A~~~~~kal~--~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~ 589 (713)
..|++++|..++++++. ..|....++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666655 4455555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005133 590 SYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIM 639 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~ 639 (713)
+|+++++..|.+..++..++.++...|++++|+.+++++++..|+++.+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 55555555555555555555555555555555555555555555554443
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=2.7e-22 Score=224.42 Aligned_cols=216 Identities=16% Similarity=0.164 Sum_probs=181.5
Q ss_pred hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005133 479 VVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED-MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNF 557 (713)
Q Consensus 479 ~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~-~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~ 557 (713)
.+.+++|+..++++....|....++..+|.++...|++ ++|+.+++++++.+|.++.+|+.+|.+|...|++++|+.+|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567777777777777788888888888888888888 88888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHH
Q 005133 558 QRAVQLNPRFAYGHTLCGHEYVAL---------EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ--------EKFEF 620 (713)
Q Consensus 558 ~kal~~~p~~~~a~~~lg~~~~~~---------g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~--------g~~~e 620 (713)
+++++++|+ ..++..+|.++... |++++|+.+|+++++++|++..+|+.+|.+|... |++++
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 888888887 68888888888888 8888888888888888888888888888888888 88888
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 005133 621 SEHHFRMAFQISP---HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEE 695 (713)
Q Consensus 621 A~~~l~kal~~~p---~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~k 695 (713)
|+.+|+++++++| .++.++..+|.+|..+|++++|+..|+++++++|+++.++..++.++..+|++++|+..+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888888888 88888888888888888888888888888888888888888888888888888888876544
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=9.4e-22 Score=189.59 Aligned_cols=172 Identities=15% Similarity=0.258 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNC 543 (713)
Q Consensus 464 ~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 543 (713)
+++.+|+.+|.+|..+|+|++|+++|+++++++|++..++..+|.++...|++++|+..+.+++...|..+.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45678888888888888888888888888888888877777777777777777777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005133 544 YSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEH 623 (713)
Q Consensus 544 ~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~ 623 (713)
+...++++.|+..+.+++..+|.+..++..+|.+|...|++++|+..|+++++++|.++.+++.+|.+|..+|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCCC
Q 005133 624 HFRMAFQISPHS 635 (713)
Q Consensus 624 ~l~kal~~~p~~ 635 (713)
+|+++++++|++
T Consensus 163 ~~~~al~~~p~~ 174 (184)
T 3vtx_A 163 YFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHTTHHH
T ss_pred HHHHHHhCCccC
Confidence 777777666654
No 50
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=3.8e-22 Score=223.15 Aligned_cols=214 Identities=16% Similarity=0.114 Sum_probs=207.3
Q ss_pred CHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 005133 447 RCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDY-LEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQE 525 (713)
Q Consensus 447 ~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~-~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~k 525 (713)
++++|+..++++....+..+.+++.+|.++...|+| ++|+++|+++++.+|.+..++..+|.+++..|++++|+.++++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477888888888888999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------cCHHHHH
Q 005133 526 LITTDRLAPQSWCAMGNCYSLQ---------KDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL--------EDFENGI 588 (713)
Q Consensus 526 al~~~p~~~~~~~~la~~~~~~---------g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~--------g~~eeAl 588 (713)
+++++|+ ..++..+|.++... |++++|+.+|+++++++|++..+|..+|.+|... |++++|+
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 9999999 79999999999999 9999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005133 589 RSYQSALRVDA---RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEK 661 (713)
Q Consensus 589 ~~~~~al~~~p---~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~k 661 (713)
.+|+++++++| +++.+|+.+|.+|...|++++|+..|+++++++|++..++..++.++..+|++++|+..+.+
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999987654
No 51
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=6.5e-20 Score=207.78 Aligned_cols=260 Identities=12% Similarity=0.055 Sum_probs=211.4
Q ss_pred cCCHHHHHHHHHcCcccCCCCH--HHHHHHHHHH-------------HHhhcHHHHHHHHHH------HHHh-----CCC
Q 005133 445 MYRCKDALDVYLKLPHKHYNTG--WVLSQVGKAY-------------FEVVDYLEAERAFTL------ARRA-----SPY 498 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~~~~~--~~~~~lg~~~-------------~~~g~~~eA~~~~~k------al~~-----~p~ 498 (713)
.|++++|..+|++++. .|... ..|...+... ...++|.+|...|.. +++. .|.
T Consensus 143 ~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 143 NQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 5678999999999888 45432 2332222211 134678888887776 3332 232
Q ss_pred C-------HHHHHHHHHHHHHc----cC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cCCHH-----
Q 005133 499 S-------LEGMDIYSTVLYHL----KE----DMKLSYLAQELITTDRLAPQSWCAMGNCYSL-------QKDHE----- 551 (713)
Q Consensus 499 ~-------~~a~~~la~~l~~~----g~----~~~A~~~~~kal~~~p~~~~~~~~la~~~~~-------~g~~~----- 551 (713)
. ...|..+....... ++ ..++...|++++...|.++.+|+.+|.++.. .|+++
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 2 23444433222211 12 2477889999999999999999999999986 79987
Q ss_pred --HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 005133 552 --TALKNFQRAVQ-LNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY-NSWYGLGMVYLRQEKFEFSEHHFRM 627 (713)
Q Consensus 552 --~Al~~~~kal~-~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~-~~~~~lg~~y~~~g~~~eA~~~l~k 627 (713)
+|+.+|+++++ ..|++..+|..+|.++...|++++|..+|+++++..|.++ .+|..+|.++.+.|++++|+..|++
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999997 7999999999999999999999999999999999999985 6999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 628 AFQISPHSSVIMSYLGTA-MHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 628 al~~~p~~~~~~~~la~~-~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
+++..|.....+...+.+ +...|++++|+.+|+++++..|+++.+|..++.++...|++++|...|++++...|.++.
T Consensus 382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 999988887777777766 346899999999999999999999999999999999999999999999999998876654
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=2e-21 Score=204.39 Aligned_cols=252 Identities=9% Similarity=-0.039 Sum_probs=220.3
Q ss_pred HHHHHHHHcCcccCCCCHHHHHHHHHHHHH-------hhcH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 005133 449 KDALDVYLKLPHKHYNTGWVLSQVGKAYFE-------VVDY-------LEAERAFTLARR-ASPYSLEGMDIYSTVLYHL 513 (713)
Q Consensus 449 ~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~-------~g~~-------~eA~~~~~kal~-~~p~~~~a~~~la~~l~~~ 513 (713)
++|+..|++++...|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..++.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999998874 4775 899999999999 7999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHH
Q 005133 514 KEDMKLSYLAQELITTDRLAPQ-SWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA-LEDFENGIRSY 591 (713)
Q Consensus 514 g~~~~A~~~~~kal~~~p~~~~-~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~-~g~~eeAl~~~ 591 (713)
|++++|...|+++++..|.++. +|..+|.++...|++++|+.+|+++++..|....+|...+.+... .|++++|+.+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887 899999999999999999999999999999888888777666443 79999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005133 592 QSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI---SP-HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (713)
Q Consensus 592 ~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~---~p-~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p 667 (713)
+++++.+|+++.+|..+|.++...|++++|+.+|++++.. .| ....+|..++.++...|++++|..+++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999995 44 3778999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 668 KNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 668 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
++...... +.+ ....+++.+.|+++.+...||.
T Consensus 273 ~~~~~~~~-~~~-----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 273 EEYEGKET-ALL-----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp TTTSSCHH-HHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred cccccchH-HHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence 86544311 111 1112667789999999999885
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.88 E-value=1.5e-21 Score=199.71 Aligned_cols=233 Identities=9% Similarity=-0.014 Sum_probs=210.3
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 005133 473 GKAYFEVVDYLEAERAFTLARRAS----PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK 548 (713)
Q Consensus 473 g~~~~~~g~~~eA~~~~~kal~~~----p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 548 (713)
+..+...|++++|+..|+++++.. |.+..++..+|.++...|++++|...++++++.+|.++.+|..+|.++...|
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 334445689999999999999974 4567889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 549 DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMA 628 (713)
Q Consensus 549 ~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~ka 628 (713)
++++|+.+|+++++.+|.+..++..+|.+|...|++++|+.+|+++++.+|++......++.+ ...|++++|+..++++
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQH 170 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998777666644 6779999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Q 005133 629 FQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK----NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (713)
Q Consensus 629 l~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~ 704 (713)
+...|.+...+. ++.++...++.++|+..+++++...|. ++.++..+|.++...|++++|+.+|+++++++|++.
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 999998866654 777888889999999999999877653 368899999999999999999999999999999876
Q ss_pred hHH
Q 005133 705 GVY 707 (713)
Q Consensus 705 ~~~ 707 (713)
..+
T Consensus 250 ~~~ 252 (275)
T 1xnf_A 250 VEH 252 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=1e-20 Score=198.97 Aligned_cols=222 Identities=7% Similarity=-0.057 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Q 005133 483 LEAERAFTLARRASPYSLEGMDIYSTVLYH-------LKED-------MKLSYLAQELIT-TDRLAPQSWCAMGNCYSLQ 547 (713)
Q Consensus 483 ~eA~~~~~kal~~~p~~~~a~~~la~~l~~-------~g~~-------~~A~~~~~kal~-~~p~~~~~~~~la~~~~~~ 547 (713)
++|+..|++++..+|.++++|..++.++.. .|+. ++|...++++++ +.|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 4775 899999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 005133 548 KDHETALKNFQRAVQLNPRFAY-GHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR-QEKFEFSEHHF 625 (713)
Q Consensus 548 g~~~~Al~~~~kal~~~p~~~~-a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~-~g~~~eA~~~l 625 (713)
|++++|+..|++++++.|.+.. +|..+|.++...|++++|+.+|+++++..|....+|...+.+... .|++++|+..|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999886 999999999999999999999999999999998888877776544 79999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 005133 626 RMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA---DK-KNPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 626 ~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~---~p-~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P 701 (713)
+++++..|+++.+|..+|.++...|++++|+.+|++++.. .| +...+|..++..+...|++++|...++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999996 45 3678999999999999999999999999999999
Q ss_pred CCh
Q 005133 702 RES 704 (713)
Q Consensus 702 ~~~ 704 (713)
++.
T Consensus 273 ~~~ 275 (308)
T 2ond_A 273 EEY 275 (308)
T ss_dssp TTT
T ss_pred ccc
Confidence 854
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.88 E-value=3.8e-20 Score=190.33 Aligned_cols=227 Identities=17% Similarity=0.220 Sum_probs=210.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFE----VVDYLEAERAFTLARRASPYSLEGMDIYSTV 509 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~kal~~~p~~~~a~~~la~~ 509 (713)
..+..|..+...|++++|+.+|+++++ +.++.+++.+|.+|.. .+++++|+.+|+++++.+ +..++..+|.+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 83 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence 456677888899999999999999988 6788999999999999 999999999999999985 89999999999
Q ss_pred HHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 005133 510 LYH----LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSL----QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA- 580 (713)
Q Consensus 510 l~~----~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~----~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~- 580 (713)
+.. .+++++|+.+++++++.. ++.+++.+|.+|.. .+++++|+.+|+++++.. +..++..+|.+|..
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAG 159 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcC
Confidence 999 999999999999999984 89999999999999 999999999999999976 68899999999999
Q ss_pred ---ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----c
Q 005133 581 ---LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR----QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA----L 649 (713)
Q Consensus 581 ---~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~----~ 649 (713)
.+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++..+ +.++..+|.+|.. .
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~ 235 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVT 235 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcc
Confidence 99999999999999987 468999999999999 9999999999999999865 8899999999999 9
Q ss_pred CChHHHHHHHHHHHHhCCCChhH
Q 005133 650 KRSGEAIEMMEKAILADKKNPLP 672 (713)
Q Consensus 650 g~~eeAl~~l~kal~~~p~~~~~ 672 (713)
+++++|+.+|+++++..|.+...
T Consensus 236 ~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 236 RNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp CCSTTHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998854433
No 56
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=2.4e-20 Score=186.42 Aligned_cols=211 Identities=11% Similarity=0.115 Sum_probs=156.1
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 463 YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP-YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMG 541 (713)
Q Consensus 463 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p-~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 541 (713)
+.++..++.+|.+++..|++++|+..|+++++.+| .+..++..+|.++...|++++|+..++++++.+|.+..+|..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 44668889999999999999999999999999988 77777777888888888888888888888888887777788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 005133 542 NCYSLQKDHETALKNFQRAVQLNPRFA-------YGHTLCGHEYVALEDFENGIRSYQSALRVDAR--HYNSWYGLGMVY 612 (713)
Q Consensus 542 ~~~~~~g~~~~Al~~~~kal~~~p~~~-------~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~--~~~~~~~lg~~y 612 (713)
.+|...|++++|+.+|+++++++|++. .+|..+|.++...|++++|+..|+++++++|+ +..++..+|.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 888888888888888888887777777 45777777777777777777777777777777 677777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005133 613 LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANIL 680 (713)
Q Consensus 613 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~ 680 (713)
...| ...++++..+.+.....+ .+......+.+++|+.+|+++++++|+++.+...++.+.
T Consensus 164 ~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 6543 344555555555554332 334445556677777777777777777777666666554
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=210.23 Aligned_cols=241 Identities=16% Similarity=0.133 Sum_probs=213.8
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CC
Q 005133 463 YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL----EGMDIYSTVLYHLKEDMKLSYLAQELITTD------RL 532 (713)
Q Consensus 463 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~----~a~~~la~~l~~~g~~~~A~~~~~kal~~~------p~ 532 (713)
.....+++.+|.+++..|++++|+.+|+++++..|.+. .++..+|.++...|++++|..++++++... +.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45677889999999999999999999999999999884 678899999999999999999999998773 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------HHH
Q 005133 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALED--------------------FEN 586 (713)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~------~~a~~~lg~~~~~~g~--------------------~ee 586 (713)
...++..+|.++...|++++|+.++++++.+.+.. ..++..+|.+|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 46789999999999999999999999999886543 4588999999999999 999
Q ss_pred HHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHH
Q 005133 587 GIRSYQSALRV------DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS------VIMSYLGTAMHALKRSGE 654 (713)
Q Consensus 587 Al~~~~~al~~------~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~------~~~~~la~~~~~~g~~ee 654 (713)
|+.++++++.+ .+....++..+|.+|...|++++|+.++++++++.+... .++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999999886 333456899999999999999999999999998865443 388999999999999999
Q ss_pred HHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 005133 655 AIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 655 Al~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++++.+..
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 999999999887655 6788999999999999999999999999986543
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=5.9e-21 Score=190.84 Aligned_cols=208 Identities=13% Similarity=0.109 Sum_probs=182.8
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 497 PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDR-LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575 (713)
Q Consensus 497 p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p-~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg 575 (713)
+.++..+..+|.++...|++++|+..++++++.+| .+..+++.+|.++...|++++|+.+|+++++.+|.+..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45678899999999999999999999999999998 88899999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 005133 576 HEYVALEDFENGIRSYQSALRVDARHY-------NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH--SSVIMSYLGTAM 646 (713)
Q Consensus 576 ~~~~~~g~~eeAl~~~~~al~~~p~~~-------~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~--~~~~~~~la~~~ 646 (713)
.+|...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999999999999999999999988 66999999999999999999999999999999 889999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 647 HALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 647 ~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
...|+ ..++++..+.+.....+ .+......+.+++|+.+|+++++++|+++.+...|+
T Consensus 164 ~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 164 YNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 77653 45666666666554433 445566778899999999999999999999887765
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=9.7e-22 Score=214.02 Aligned_cols=239 Identities=17% Similarity=0.136 Sum_probs=214.1
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCC
Q 005133 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL----EGMDIYSTVLYHLKEDMKLSYLAQELITT------DRLA 533 (713)
Q Consensus 464 ~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~----~a~~~la~~l~~~g~~~~A~~~~~kal~~------~p~~ 533 (713)
.....++.+|..++..|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.+++++++. .+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3456678899999999999999999999999999986 57889999999999999999999999987 4666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccC-----------------HHHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQL------NPRFAYGHTLCGHEYVALED-----------------FENGIRS 590 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~------~p~~~~a~~~lg~~~~~~g~-----------------~eeAl~~ 590 (713)
..++..+|.+|...|++++|+.+|++++++ .+....++..+|.+|...|+ +++|+.+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 789999999999999999999999999988 45567789999999999999 9999999
Q ss_pred HHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHH
Q 005133 591 YQSALRVD------ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS------VIMSYLGTAMHALKRSGEAIEM 658 (713)
Q Consensus 591 ~~~al~~~------p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~------~~~~~la~~~~~~g~~eeAl~~ 658 (713)
+++++++. +....++..+|.+|...|++++|+.+|++++++.+... .++..+|.+|...|++++|+.+
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99998863 23456899999999999999999999999998866432 3889999999999999999999
Q ss_pred HHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 659 MEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 659 l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
|++++...+.. ..++..+|.++...|++++|+.+|++++++.+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999987643 578899999999999999999999999997654
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=4.3e-21 Score=223.84 Aligned_cols=173 Identities=17% Similarity=0.195 Sum_probs=127.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 530 DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (713)
Q Consensus 530 ~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg 609 (713)
.|++++++..+|.+|..+|++++|+++|+++++++|++..+|..+|.+|..+|++++|+.+|+++++++|+++.+|+++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Q 005133 610 MVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEA 689 (713)
Q Consensus 610 ~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA 689 (713)
.+|..+|++++|++.|+++++++|++..++.++|.+|..+|++++|+..|+++++++|+++.++..+|.++..+|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHCCC
Q 005133 690 LEVLEELKEYAPR 702 (713)
Q Consensus 690 ~~~~~kal~l~P~ 702 (713)
.+.|++++++.|+
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 7777777766554
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=203.93 Aligned_cols=243 Identities=14% Similarity=0.070 Sum_probs=181.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Q 005133 460 HKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA--------SPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITT-- 529 (713)
Q Consensus 460 ~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~--------~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~-- 529 (713)
..+|....++..+|.+++..|++++|+.+|+++++. .|....++..+|.++...|++++|..++++++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345556667777777777777777777777777764 4455666777777777777777777777777765
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 530 ------DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN--------PRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (713)
Q Consensus 530 ------~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~--------p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al 595 (713)
.|....++..+|.+|...|++++|+.+|++++++. |....++..+|.++...|++++|+.+|++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 24456788899999999999999999999998873 4556778899999999999999999999999
Q ss_pred Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------C------HHHHHHHHHHHHHcCCh
Q 005133 596 RV--------DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH---------S------SVIMSYLGTAMHALKRS 652 (713)
Q Consensus 596 ~~--------~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~---------~------~~~~~~la~~~~~~g~~ 652 (713)
.. .|....++..+|.+|...|++++|+.+|+++++..+. . ...+..++..+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 87 6666778999999999999999999999999976432 1 22344455566677788
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 653 GEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 653 eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
.+|+..++++....|....++..+|.+|...|++++|+.+|++++++.|+
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 88999999999988989999999999999999999999999999998875
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=3.5e-21 Score=201.51 Aligned_cols=238 Identities=16% Similarity=0.139 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHH
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL----EGMDIYSTVLYHLKEDMKLSYLAQELITT------DRLAPQ 535 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~----~a~~~la~~l~~~g~~~~A~~~~~kal~~------~p~~~~ 535 (713)
...++..|..++..|++++|+.+|+++++..|.+. .++..+|.++...|++++|..++++++.. .+....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 45678899999999999999999999999999984 67889999999999999999999999877 344567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------HHHHHH
Q 005133 536 SWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALED--------------------FENGIR 589 (713)
Q Consensus 536 ~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~------~~a~~~lg~~~~~~g~--------------------~eeAl~ 589 (713)
++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 89999999999999999999999999885543 3488999999999999 999999
Q ss_pred HHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHH
Q 005133 590 SYQSALRV------DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIE 657 (713)
Q Consensus 590 ~~~~al~~------~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~eeAl~ 657 (713)
++++++.+ .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999876 23345689999999999999999999999999875432 2388999999999999999999
Q ss_pred HHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 005133 658 MMEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 658 ~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
++++++...+.. ..++..+|.++...|++++|+.++++++++.+..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 999999886654 6688999999999999999999999999876543
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.85 E-value=4.5e-20 Score=205.03 Aligned_cols=238 Identities=14% Similarity=0.112 Sum_probs=199.7
Q ss_pred CHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHH
Q 005133 447 RCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVV---DYLEAERAFTLARRASPYSLEGMDIYSTVLYHL----KEDMKL 519 (713)
Q Consensus 447 ~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g---~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~----g~~~~A 519 (713)
..++|..++..+...+|. +++.+|.+|...| ++++|+++|+++.+..+.....++.++.++... +++++|
T Consensus 160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 445555566666665554 8899999999999 999999999999999999999889999999765 689999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----CHHHHHHHH
Q 005133 520 SYLAQELITTDRLAPQSWCAMGNC-Y--SLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE-----DFENGIRSY 591 (713)
Q Consensus 520 ~~~~~kal~~~p~~~~~~~~la~~-~--~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g-----~~eeAl~~~ 591 (713)
+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+. .++.+++.+|.+|. .| ++++|+.+|
T Consensus 237 ~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 237 QALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99999988 8899999999998 4 5789999999999999865 48999999999998 56 999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 005133 592 QSALRVDARHYNSWYGLGMVYLR----QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA----LKRSGEAIEMMEKAI 663 (713)
Q Consensus 592 ~~al~~~p~~~~~~~~lg~~y~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~----~g~~eeAl~~l~kal 663 (713)
+++. +.++.+++.+|.+|.. ..++++|+.+|+++.+. .++.+.+.+|.+|.. .+++++|+.+|+++.
T Consensus 311 ~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 311 EKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 9998 8899999999999987 44999999999999874 567888999999985 458999999999998
Q ss_pred HhCCCChhHHHHHHHHHHHc--CCHHHHHHHHHHHHHHC
Q 005133 664 LADKKNPLPMYQKANILLSL--EKFDEALEVLEELKEYA 700 (713)
Q Consensus 664 ~~~p~~~~~~~~la~~~~~~--g~~~eA~~~~~kal~l~ 700 (713)
+.. +..+...++.+...+ ++..+|....++..+..
T Consensus 386 ~~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 386 AQD--TPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp TTC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 865 456666666665433 46677777777766543
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.85 E-value=1.8e-20 Score=202.86 Aligned_cols=233 Identities=12% Similarity=0.048 Sum_probs=182.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HH
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARRA---SP---YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA-------PQ 535 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~~---~p---~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~-------~~ 535 (713)
++.+|.+++..|++++|+.+|+++++. .+ ....++..+|.++...|++++|+..+++++++.+.. ..
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 445888888888888888888888876 22 245678888888888888888888888888874433 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC-CCCHH
Q 005133 536 SWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALEDFENGIRSYQSALR-----VD-ARHYN 603 (713)
Q Consensus 536 ~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~------~~a~~~lg~~~~~~g~~eeAl~~~~~al~-----~~-p~~~~ 603 (713)
++..+|.+|...|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|+++++ .+ |....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 77888888888888888888888888774432 24788888888888888888888888888 45 66778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHH
Q 005133 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQIS-----PHSSVIMSYLGTAMHALKR---SGEAIEMMEKAILADKKNPLPMYQ 675 (713)
Q Consensus 604 ~~~~lg~~y~~~g~~~eA~~~l~kal~~~-----p~~~~~~~~la~~~~~~g~---~eeAl~~l~kal~~~p~~~~~~~~ 675 (713)
++..+|.+|...|++++|+.++++++++. |.....+..+|.++...|+ +++|+.++++. ...+....++..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 88888888888888888888888888773 2223345668888888888 77777777765 222334567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 676 KANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 676 la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
+|.+|...|++++|+.+|++++++...
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987543
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.84 E-value=4.9e-20 Score=214.88 Aligned_cols=171 Identities=15% Similarity=0.195 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 462 HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMG 541 (713)
Q Consensus 462 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 541 (713)
.|+++.++..+|.+|..+|++++|+++|+++++++|++ ..+|..+|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~----------------------------------~~a~~nLg 50 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----------------------------------AAAHSNLA 50 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----------------------------------HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------HHHHHHHH
Confidence 45555555555665555555555555555555555554 55555556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005133 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS 621 (713)
Q Consensus 542 ~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA 621 (713)
.+|..+|++++|+.+|+++++++|+++.+|..+|.+|..+|++++|+++|+++++++|++..+++++|.+|..+|++++|
T Consensus 51 ~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA 130 (723)
T 4gyw_A 51 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005133 622 EHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (713)
Q Consensus 622 ~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~ 666 (713)
+..|+++++++|+++.++.++|.++..+|++++|++.+++++++.
T Consensus 131 i~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 131 IASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 666666666666666666666666666666666666666666543
No 66
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.83 E-value=1.2e-18 Score=182.10 Aligned_cols=231 Identities=10% Similarity=0.067 Sum_probs=133.1
Q ss_pred HHHHHHHHcCcccCCCCHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 449 KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVV--DYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQEL 526 (713)
Q Consensus 449 ~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g--~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~ka 526 (713)
++|+.++.+++..+|+...+|...|.++...+ +++++++++.+++..+|.+..+|...+.++.+..
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~------------ 117 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM------------ 117 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH------------
Confidence 45555555555555555555555555555555 5555555555555555555555554444441000
Q ss_pred HHhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCC
Q 005133 527 ITTDRLAPQSWCAMGNCYSLQ---KDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFE--NGIRSYQSALRVDARH 601 (713)
Q Consensus 527 l~~~p~~~~~~~~la~~~~~~---g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~e--eAl~~~~~al~~~p~~ 601 (713)
... +++++++.++.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|.+
T Consensus 118 ------------------~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N 179 (306)
T 3dra_A 118 ------------------ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN 179 (306)
T ss_dssp ------------------HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC
T ss_pred ------------------HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC
Confidence 333 45556666666666666666666666666666555555 6666666666666666
Q ss_pred HHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHhC---CCChh
Q 005133 602 YNSWYGLGMVYLRQEK------FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGE-AIEMMEKAILAD---KKNPL 671 (713)
Q Consensus 602 ~~~~~~lg~~y~~~g~------~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ee-Al~~l~kal~~~---p~~~~ 671 (713)
..+|...+.++...++ ++++++++.+++..+|.+..+|+.++.++.+.|+..+ ...++.+++.++ +.++.
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 259 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSF 259 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHH
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHH
Confidence 6666666666655554 6666666666666666666666666666666665333 334455554444 55566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCChhHHHh
Q 005133 672 PMYQKANILLSLEKFDEALEVLEELKE-YAPRESGVYAL 709 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~~~kal~-l~P~~~~~~~~ 709 (713)
++..++.+|.+.|+.++|+++|+++.+ .+|-....|..
T Consensus 260 al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 260 ALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 666666666666666666666666664 56665555544
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.82 E-value=1.6e-19 Score=195.47 Aligned_cols=243 Identities=13% Similarity=0.066 Sum_probs=207.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHcCccc------CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 005133 424 TGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHK------HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP 497 (713)
Q Consensus 424 ~~~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p 497 (713)
...+.++..+..+..|..+...|++++|+..|++++.. .+..+.+++.+|.+|...|++++|+.+|++++++.+
T Consensus 95 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 174 (383)
T 3ulq_A 95 ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK 174 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34455666677888999999999999999999998654 223668999999999999999999999999999854
Q ss_pred CC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 005133 498 YS-------LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP------QSWCAMGNCYSLQKDHETALKNFQRAVQ-- 562 (713)
Q Consensus 498 ~~-------~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~------~~~~~la~~~~~~g~~~~Al~~~~kal~-- 562 (713)
.. ..++..+|.++..+|++++|...++++++..+... .++..+|.+|...|++++|+.+|+++++
T Consensus 175 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 33 45788999999999999999999999998765433 5899999999999999999999999999
Q ss_pred ---hC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Q 005133 563 ---LN-PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD-----ARHYNSWYGLGMVYLRQEK---FEFSEHHFRMAFQ 630 (713)
Q Consensus 563 ---~~-p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~-----p~~~~~~~~lg~~y~~~g~---~~eA~~~l~kal~ 630 (713)
.+ |....++..+|.+|...|++++|+.++++++++. |.....+..+|.+|...|+ +++|+.++++. .
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~ 333 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-M 333 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-T
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-c
Confidence 45 7778899999999999999999999999999873 3334446789999999999 88888888876 3
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005133 631 ISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (713)
Q Consensus 631 ~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p 667 (713)
..+....++..+|.+|...|++++|+.+|++++++..
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3334456888999999999999999999999998754
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=6.7e-19 Score=179.94 Aligned_cols=213 Identities=15% Similarity=0.137 Sum_probs=162.2
Q ss_pred cCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---H
Q 005133 461 KHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS---LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA---P 534 (713)
Q Consensus 461 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~---~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~---~ 534 (713)
..+..+..++.+|..++..|+|++|+..|+++++.+|.+ ..+++.+|.++...|++++|+..++++++..|.+ +
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 456778888888888888888888888888888888887 7778888888888888888888888888877644 4
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 005133 535 QSWCAMGNCYSL--------QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWY 606 (713)
Q Consensus 535 ~~~~~la~~~~~--------~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~ 606 (713)
.+++.+|.++.. .|++++|+..|+++++..|++..++..+..+....+.. ...++
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~ 152 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL-----------------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH-----------------HHHHH
Confidence 677788888887 88888888888888888887765554433322221111 22368
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCh---
Q 005133 607 GLGMVYLRQEKFEFSEHHFRMAFQISPH---SSVIMSYLGTAMHAL----------KRSGEAIEMMEKAILADKKNP--- 670 (713)
Q Consensus 607 ~lg~~y~~~g~~~eA~~~l~kal~~~p~---~~~~~~~la~~~~~~----------g~~eeAl~~l~kal~~~p~~~--- 670 (713)
.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.+|..+ |++++|+..|+++++..|+++
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 8899999999999999999999988887 456888899988877 888999999999999998885
Q ss_pred hHHHHHHHHHHHcCCHHHHH
Q 005133 671 LPMYQKANILLSLEKFDEAL 690 (713)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~ 690 (713)
.+...++.++..+++++++.
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 44556677777776665543
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=8e-19 Score=167.23 Aligned_cols=176 Identities=16% Similarity=0.127 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~ 613 (713)
...+..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 005133 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVL 693 (713)
Q Consensus 614 ~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 693 (713)
..|++++|+.+++++++..|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+.++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCChhHHHh
Q 005133 694 EELKEYAPRESGVYAL 709 (713)
Q Consensus 694 ~kal~l~P~~~~~~~~ 709 (713)
+++++..|++......
T Consensus 168 ~~~~~~~~~~~~~~~~ 183 (186)
T 3as5_A 168 KKANELDEGASVELAL 183 (186)
T ss_dssp HHHHHHHHCCCGGGGG
T ss_pred HHHHHcCCCchhhHhh
Confidence 9999999987665443
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.6e-20 Score=192.51 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=191.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcc--------cCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------CC
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPH--------KHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA--------SP 497 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~--------~p 497 (713)
.++..|..+...|++++|+.+|++++. ..+....++..+|.++...|++++|+.+|++++.. .|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 445667777899999999999999987 46778889999999999999999999999999988 35
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------
Q 005133 498 YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTD--------RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL------ 563 (713)
Q Consensus 498 ~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~--------p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~------ 563 (713)
....++..++.++...|++++|..+++++++.. |....++..+|.++...|++++|+.+|++++..
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 567789999999999999999999999999874 455678999999999999999999999999998
Q ss_pred --CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------C------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 564 --NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR---------H------YNSWYGLGMVYLRQEKFEFSEHHFR 626 (713)
Q Consensus 564 --~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~---------~------~~~~~~lg~~y~~~g~~~eA~~~l~ 626 (713)
.|....++..+|.+|...|++++|+.+|+++++..+. . ...+..++..+...+.+.+|+..+.
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 6666788999999999999999999999999976332 2 2334445555666677788888999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005133 627 MAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668 (713)
Q Consensus 627 kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~ 668 (713)
++....|....++..+|.+|...|++++|+.+|++++++.|+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 999888999999999999999999999999999999998764
No 71
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=2.7e-17 Score=195.22 Aligned_cols=240 Identities=13% Similarity=0.061 Sum_probs=178.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g 514 (713)
++..|..+...|++++|++.|.++ +++..|..+|.++.+.|+|++|+++|..+++..++. .+...++.+|.+++
T Consensus 1108 WsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1108 WSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhc
Confidence 335566668889999999999876 677888999999999999999999999998887542 12224777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a 594 (713)
++++...+. ...+...|..+|..+...|+|++|+.+|.++ ..|..+|.+|..+|++++|+++++++
T Consensus 1182 rleele~fI------~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1182 RLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred CHHHHHHHH------hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 776533331 2223456667888888888888888888875 46777888888888888888888777
Q ss_pred HHhCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 595 LRVDA-------------------------RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL 649 (713)
Q Consensus 595 l~~~p-------------------------~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 649 (713)
....+ .+++.+..++..|...|.|++|+.++++++.+++.+...+..+|.+|.+-
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 33221 13444556777788888888888888888888888888887777777654
Q ss_pred --CChHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 650 --KRSGEAIEMMEKAILADK-----KNPLPMYQKANILLSLEKFDEALEVLE 694 (713)
Q Consensus 650 --g~~eeAl~~l~kal~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~~~ 694 (713)
++..+++++|...+.+.+ .+...|..+..+|.+-|+++.|+...-
T Consensus 1328 ~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 567778888877777655 677788888899999999998884443
No 72
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=3.1e-19 Score=208.44 Aligned_cols=191 Identities=11% Similarity=-0.029 Sum_probs=174.5
Q ss_pred cCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 457 KLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLAR--------RASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELIT 528 (713)
Q Consensus 457 ~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal--------~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~ 528 (713)
.+...+|.++.+++..| ...|++++|++.|++++ +.+|.+.+++..+|.++...|++++|+..++++++
T Consensus 385 ~~p~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 385 SVPLVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CCBCCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCccCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 34566777777777776 78899999999999999 89999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGL 608 (713)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~l 608 (713)
.+|++..+|+.+|.+|...|++++|+..|+++++++|++..++..+|.++...|++++ +..|+++++++|++..+++++
T Consensus 462 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~l 540 (681)
T 2pzi_A 462 RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGL 540 (681)
T ss_dssp HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005133 609 GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR 651 (713)
Q Consensus 609 g~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~ 651 (713)
|.+|...|++++|+..|+++++++|++..++..+|.++...++
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999987666
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=8.8e-19 Score=179.04 Aligned_cols=179 Identities=13% Similarity=0.130 Sum_probs=131.2
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---H
Q 005133 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---Y 602 (713)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~ 602 (713)
..|.++..++.+|..+...|++++|+..|+++++..|.+ ..+++.+|.+|...|++++|+..|+++++..|++ .
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 455556666666666666666666666666666666665 5666666666666666666666666666665532 4
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHHHHH
Q 005133 603 NSWYGLGMVYLR--------QEKFEFSEHHFRMAFQISPHSSVIM-----------------SYLGTAMHALKRSGEAIE 657 (713)
Q Consensus 603 ~~~~~lg~~y~~--------~g~~~eA~~~l~kal~~~p~~~~~~-----------------~~la~~~~~~g~~eeAl~ 657 (713)
.+++.+|.++.. .|++++|+..|+++++..|++..+. +.+|.+|...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 456666666666 6666666666666666666654433 889999999999999999
Q ss_pred HHHHHHHhCCCC---hhHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHCCCChhHH
Q 005133 658 MMEKAILADKKN---PLPMYQKANILLSL----------EKFDEALEVLEELKEYAPRESGVY 707 (713)
Q Consensus 658 ~l~kal~~~p~~---~~~~~~la~~~~~~----------g~~~eA~~~~~kal~l~P~~~~~~ 707 (713)
.|+++++..|++ +.+++.+|.+|..+ |++++|+..|+++++..|+++.+.
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 999999999984 56899999999977 999999999999999999986543
No 74
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.81 E-value=4.3e-18 Score=177.82 Aligned_cols=207 Identities=10% Similarity=-0.014 Sum_probs=132.2
Q ss_pred HHHHHHHHHccC--CHHHHHHHHHcCcccCCCCHHHHHHHHHHH----HHh---hcHHHHHHHHHHHHHhCCCCHHHHHH
Q 005133 435 ILGEGYRMSCMY--RCKDALDVYLKLPHKHYNTGWVLSQVGKAY----FEV---VDYLEAERAFTLARRASPYSLEGMDI 505 (713)
Q Consensus 435 ~l~~a~~l~~~g--~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~----~~~---g~~~eA~~~~~kal~~~p~~~~a~~~ 505 (713)
+..++..+...+ ++++++.+++.++..+|.+..+|...+.++ ... ++++++++++.++++.+|.+..+|..
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~ 149 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSY 149 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 567888888888 999999999999999999999999999999 666 67888888888888888888777777
Q ss_pred HHHHHHHccCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 506 YSTVLYHLKEDM--KLSYLAQELITTDRLAPQSWCAMGNCYSLQKD------HETALKNFQRAVQLNPRFAYGHTLCGHE 577 (713)
Q Consensus 506 la~~l~~~g~~~--~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~------~~~Al~~~~kal~~~p~~~~a~~~lg~~ 577 (713)
.+.++..++.++ +++.+++++++.+|.+..+|...+.++...+. ++++++++.+++..+|.+..+|..++.+
T Consensus 150 R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~l 229 (306)
T 3dra_A 150 RKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGI 229 (306)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHH
Confidence 777777777665 66666666666666666666666666655554 4455555555555555555555555554
Q ss_pred HHHccCHHH-HHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHH
Q 005133 578 YVALEDFEN-GIRSYQSALRVD---ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ-ISPHSSVIMSY 641 (713)
Q Consensus 578 ~~~~g~~ee-Al~~~~~al~~~---p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~-~~p~~~~~~~~ 641 (713)
+...|+..+ ....+.+++.++ |.+..++..++.+|.+.|+.++|+++|+.+.+ .+|-....|..
T Consensus 230 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 230 HERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 444444322 222333333333 34444444444444444444444444444443 34444444433
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.80 E-value=3.4e-19 Score=185.94 Aligned_cols=199 Identities=11% Similarity=0.047 Sum_probs=131.0
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHH
Q 005133 510 LYHLKEDMKLSYLAQELITTDRL------APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHE 577 (713)
Q Consensus 510 l~~~g~~~~A~~~~~kal~~~p~------~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~------~~a~~~lg~~ 577 (713)
+...|++++|+..+++++++.+. ...+|..+|.+|...|++++|+.+|++++++.+.. ..++..+|.+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444444444444444443211 13566777777777777777777777777775532 3467777888
Q ss_pred HHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHH
Q 005133 578 YVAL-EDFENGIRSYQSALRVDARH------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV-------IMSYLG 643 (713)
Q Consensus 578 ~~~~-g~~eeAl~~~~~al~~~p~~------~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~-------~~~~la 643 (713)
|... |++++|+.+|++++++.|.. ..++..+|.+|..+|++++|+.+|++++++.|.+.. ++..+|
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8875 88888888888888776643 456777888888888888888888888887766543 567778
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhH-----HHHHHHHHH--HcCCHHHHHHHHHHHHHHCCCChhHHH
Q 005133 644 TAMHALKRSGEAIEMMEKAILADKKNPLP-----MYQKANILL--SLEKFDEALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 644 ~~~~~~g~~eeAl~~l~kal~~~p~~~~~-----~~~la~~~~--~~g~~~eA~~~~~kal~l~P~~~~~~~ 708 (713)
.++..+|++++|+.+|+++++++|..... +..++..+. ..+++++|+..|++++.++|....++.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 88888888888888888888777765443 334455443 456788888888877777776655543
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.80 E-value=1.1e-17 Score=180.02 Aligned_cols=268 Identities=7% Similarity=-0.107 Sum_probs=221.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCC-H----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC------HHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNT-G----WVLSQVGKAYFEVVDYLEAERAFTLARRASPYS------LEG 502 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~-~----~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~------~~a 502 (713)
..+..|..++..|++++|+..+++++...+.. . .++..+|.++...|++++|+..+++++...+.. ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34566777889999999999999987655432 2 367889999999999999999999999876543 234
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHH
Q 005133 503 MDIYSTVLYHLKEDMKLSYLAQELITTD--------RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR-----FAY 569 (713)
Q Consensus 503 ~~~la~~l~~~g~~~~A~~~~~kal~~~--------p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~-----~~~ 569 (713)
+..++.++...|++++|...++++++.. |....++..+|.++...|++++|..++++++...+. ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 6788999999999999999999999865 233467788999999999999999999999998764 246
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH
Q 005133 570 GHTLCGHEYVALEDFENGIRSYQSALRVDAR--HYNSWY-----GLGMVYLRQEKFEFSEHHFRMAFQISPHS----SVI 638 (713)
Q Consensus 570 a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~--~~~~~~-----~lg~~y~~~g~~~eA~~~l~kal~~~p~~----~~~ 638 (713)
++..+|.++...|++++|+.++++++.+.+. ....+. .++.++...|++++|..++++++...+.. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 7889999999999999999999999887332 211121 34566889999999999999998876643 335
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 005133 639 MSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 639 ~~~la~~~~~~g~~eeAl~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P 701 (713)
+..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|...+++++.+.+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 6789999999999999999999998874432 24778899999999999999999999998755
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.80 E-value=1.4e-18 Score=187.90 Aligned_cols=249 Identities=13% Similarity=0.072 Sum_probs=185.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHcCccc------CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 005133 424 TGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHK------HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP 497 (713)
Q Consensus 424 ~~~~~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p 497 (713)
...+..+..+..+.+|..+...|++++|+..|++++.. .+..+.+++.+|.+|...|++++|+.++++++++.+
T Consensus 93 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 93 KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 34455666667778888888888888888888877543 223566788888888888888888888888887654
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHH
Q 005133 498 YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNP------RFAYGH 571 (713)
Q Consensus 498 ~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p------~~~~a~ 571 (713)
..... .+....++..+|.+|...|++++|+.+|++++++.+ ....++
T Consensus 173 ~~~~~---------------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 225 (378)
T 3q15_A 173 NHPLY---------------------------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL 225 (378)
T ss_dssp TSTTC---------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCc---------------------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 32110 001135677788888888888888888888887632 124567
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHH
Q 005133 572 TLCGHEYVALEDFENGIRSYQSALR-----VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP-----HSSVIMSY 641 (713)
Q Consensus 572 ~~lg~~~~~~g~~eeAl~~~~~al~-----~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p-----~~~~~~~~ 641 (713)
..+|.+|...|++++|+.+|++++. .+|....++..+|.+|...|++++|+.++++++++.+ .....+..
T Consensus 226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 305 (378)
T 3q15_A 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305 (378)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888999999999988888 6777788888899999999999999999999888743 33445666
Q ss_pred HHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 642 LGTAMHALKR---SGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 642 la~~~~~~g~---~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
++.++...++ +.+|+.++++. ...+....++..+|.+|...|++++|+.+|+++++..
T Consensus 306 l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 306 LQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7777777777 77777777762 1223334567788999999999999999999888754
No 78
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=5.9e-19 Score=206.04 Aligned_cols=188 Identities=8% Similarity=-0.063 Sum_probs=176.0
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005133 494 RASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELI--------TTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNP 565 (713)
Q Consensus 494 ~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal--------~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p 565 (713)
..+|.++.++...+ ...|++++|+..+++++ +.+|.+..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35677777776666 78899999999999999 89999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 566 RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA 645 (713)
Q Consensus 566 ~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~ 645 (713)
++..+|+.+|.+|...|++++|+..|+++++++|+++.+++.+|.+|...|++++ +..|+++++++|++..+++++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005133 646 MHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK 685 (713)
Q Consensus 646 ~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~ 685 (713)
+..+|++++|+..|+++++++|++..+++.+|.++...|+
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999988666
No 79
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=2.2e-16 Score=187.59 Aligned_cols=201 Identities=16% Similarity=0.127 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 005133 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSL 546 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 546 (713)
..+..+|..++..|+|++|+.+|.++ ..|..++.++.++|++++|++.++++ .+..+|...+..+..
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhh
Confidence 34445666666666666666666665 24666666666666666666666666 345666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 005133 547 QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ--EKFEFSEHH 624 (713)
Q Consensus 547 ~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~--g~~~eA~~~ 624 (713)
.|+|..|..+... +..+ ++.+..++..|...|.+++|+.+++.++.+++.+...+..+|.+|.+- ++..+++++
T Consensus 1263 ~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred hhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 6666666666553 3223 333445666666666666666666666666666666666666655543 355666666
Q ss_pred HHHHHHhCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------CCCChhHHHHHHHHHHHcC
Q 005133 625 FRMAFQISP-----HSSVIMSYLGTAMHALKRSGEAIEMMEKAILA------------DKKNPLPMYQKANILLSLE 684 (713)
Q Consensus 625 l~kal~~~p-----~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~------------~p~~~~~~~~la~~~~~~g 684 (713)
|...+.+.+ .....|..+..+|.+-|+++.|+...-..... .+.+++.++..+..|...+
T Consensus 1339 f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1339 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 666555544 45556666666666666666666322222111 3445666666666665444
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=1.7e-18 Score=171.22 Aligned_cols=166 Identities=10% Similarity=0.064 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHhCC
Q 005133 536 SWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTL----------------CGHEYVALEDFENGIRSYQSALRVDA 599 (713)
Q Consensus 536 ~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~----------------lg~~~~~~g~~eeAl~~~~~al~~~p 599 (713)
.++..|..+...|++++|+.+|+++++.+|+++.+|+. +|.+|...|++++|+..|+++++++|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 34444444444444444444444444444444444444 55555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCCChhHHHHHH
Q 005133 600 RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR--SGEAIEMMEKAILADKKNPLPMYQKA 677 (713)
Q Consensus 600 ~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~--~eeAl~~l~kal~~~p~~~~~~~~la 677 (713)
+++.+++.+|.+|...|++++|+..|+++++++|+++.++..+|.+|+..|+ .+.+...+++++...| ...+++.+|
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 5555555555555555555555555555555555555555555555544432 2333444444332111 112344455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 678 NILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 678 ~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
.++...|++++|+.+|+++++++|+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 5555555555555555555555554
No 81
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.79 E-value=3.6e-19 Score=166.49 Aligned_cols=147 Identities=12% Similarity=0.141 Sum_probs=127.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005133 539 AMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKF 618 (713)
Q Consensus 539 ~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~ 618 (713)
.+|.++...|++++|+..+++++..+|+.+..++.+|.+|...|++++|+.+|+++++++|+++.+|+.+|.+|...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36778888889999999999998888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005133 619 EFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEM-MEKAILADKKNPLPMYQKANILLSLEK 685 (713)
Q Consensus 619 ~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~-l~kal~~~p~~~~~~~~la~~~~~~g~ 685 (713)
++|+..|+++++++|+++.++..+|.+|...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999998876655 588999999999999888988888775
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=8.5e-18 Score=160.07 Aligned_cols=152 Identities=15% Similarity=0.251 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 005133 519 LSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD 598 (713)
Q Consensus 519 A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~ 598 (713)
|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+.++++++...
T Consensus 27 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 106 (186)
T 3as5_A 27 AVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106 (186)
T ss_dssp HHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 33333333333344444555555555555556666666666655555555666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005133 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (713)
Q Consensus 599 p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~ 670 (713)
|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+.+++++++..|++.
T Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 666666666666666666666666666666666666666666666666666666666666666666655443
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.78 E-value=1.2e-18 Score=181.90 Aligned_cols=220 Identities=10% Similarity=0.022 Sum_probs=177.3
Q ss_pred CHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHH
Q 005133 447 RCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY------SLEGMDIYSTVLYHLKEDMKLS 520 (713)
Q Consensus 447 ~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~------~~~a~~~la~~l~~~g~~~~A~ 520 (713)
++++|+..|.++ |.+|...|+|++|+++|++++++.+. ...++..+|.++..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 478888877765 67788899999999999999887532 2567888999999999999999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHH
Q 005133 521 YLAQELITTDRLA------PQSWCAMGNCYSLQ-KDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALEDFENG 587 (713)
Q Consensus 521 ~~~~kal~~~p~~------~~~~~~la~~~~~~-g~~~~Al~~~~kal~~~p~~------~~a~~~lg~~~~~~g~~eeA 587 (713)
.++++++++.+.. ..++..+|.+|... |++++|+.+|++++++.|.. ..++..+|.++..+|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999887643 46788999999996 99999999999999997754 46788999999999999999
Q ss_pred HHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH--HcCChH
Q 005133 588 IRSYQSALRVDARHYN-------SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV-----IMSYLGTAMH--ALKRSG 653 (713)
Q Consensus 588 l~~~~~al~~~p~~~~-------~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~-----~~~~la~~~~--~~g~~e 653 (713)
+.+|++++++.|++.. ++..+|.++..+|++++|+.+|+++++++|.... .+..++..+. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999887543 6789999999999999999999999999998655 3445566554 456799
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005133 654 EAIEMMEKAILADKKNPLPMYQKANIL 680 (713)
Q Consensus 654 eAl~~l~kal~~~p~~~~~~~~la~~~ 680 (713)
+|+..|++++.++|....++..+-..+
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999999888886655555544433
No 84
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.78 E-value=1.4e-17 Score=185.01 Aligned_cols=166 Identities=13% Similarity=0.067 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005133 535 QSWCAMGNCYSLQK---DHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL----EDFENGIRSYQSALRVDARHYNSWYG 607 (713)
Q Consensus 535 ~~~~~la~~~~~~g---~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~----g~~eeAl~~~~~al~~~p~~~~~~~~ 607 (713)
.+++.+|.+|...| ++++|+.+|+++.+..+.....++.+|.+|... +++++|+.+|+++. |.++.+++.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 36666666666666 666666666666666666666666666666444 46666666666665 566666666
Q ss_pred HHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005133 608 LGMV-Y--LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK-----RSGEAIEMMEKAILADKKNPLPMYQKANI 679 (713)
Q Consensus 608 lg~~-y--~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g-----~~eeAl~~l~kal~~~p~~~~~~~~la~~ 679 (713)
+|.+ | ...+++++|+.+|+++.+. .++.+++.+|.+|. .| ++++|+.+|+++. +.++.+++.+|.+
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 6666 3 3455666666666666543 35666666666665 34 6666666666666 5566666666666
Q ss_pred HHH----cCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 680 LLS----LEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 680 ~~~----~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
|.. ..++++|+.+|+++.+. .++.+.+.||
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg 361 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIA 361 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHH
Confidence 655 23666666666666543 3344444444
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.77 E-value=1.3e-18 Score=177.56 Aligned_cols=230 Identities=12% Similarity=0.094 Sum_probs=158.0
Q ss_pred ccCCHHHHHHHHHcCcc--------cCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 005133 444 CMYRCKDALDVYLKLPH--------KHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (713)
Q Consensus 444 ~~g~~~eAi~~l~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~ 515 (713)
..|++++|+.+|++++. ..|..+.++..+|.++...|++++|+.+|+++++...
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------ 74 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE------------------ 74 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH------------------
Confidence 45666666666666543 2244455566666666666666666666666654420
Q ss_pred HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHH
Q 005133 516 DMKLSYLAQELI-TTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL--------NPRFAYGHTLCGHEYVALEDFEN 586 (713)
Q Consensus 516 ~~~A~~~~~kal-~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~--------~p~~~~a~~~lg~~~~~~g~~ee 586 (713)
+.. ...|....++..+|.+|...|++++|+.+|++++.. +|....++..+|.++...|++++
T Consensus 75 ---------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 145 (283)
T 3edt_B 75 ---------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145 (283)
T ss_dssp ---------HHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ---------HHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 000 002334567788888888888888888888888877 45567788888888888899999
Q ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHc
Q 005133 587 GIRSYQSALRV--------DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI---------SPHSSVIMSYLGTAMHAL 649 (713)
Q Consensus 587 Al~~~~~al~~--------~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~---------~p~~~~~~~~la~~~~~~ 649 (713)
|+.+|++++++ .|....++..+|.+|...|++++|+.+|+++++. .+....++..++..+...
T Consensus 146 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (283)
T 3edt_B 146 VEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK 225 (283)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC
Confidence 99999888887 6666778888999999999999999999988876 344455666677666655
Q ss_pred CChHHHH------HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 650 KRSGEAI------EMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 650 g~~eeAl------~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
+....+. .+++......|....++..+|.+|...|++++|+.+|+++++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 226 DKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5444333 33332222334456778899999999999999999999988753
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.77 E-value=9.9e-18 Score=165.62 Aligned_cols=195 Identities=14% Similarity=0.057 Sum_probs=146.5
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCY 544 (713)
Q Consensus 465 ~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~ 544 (713)
....++..|..++..|++++|+.+|+++++.+|++..++...+. ..... ..+...+.+|.+|
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~~~-------------~~~~~~~~lg~~~ 64 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKNSE-------------ISSKLATELALAY 64 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTTSH-------------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cchhh-------------hhHHHHHHHHHHH
Confidence 45677888999999999999999999999999988877665321 11000 0123455688888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHH
Q 005133 545 SLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK--FEFSE 622 (713)
Q Consensus 545 ~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~--~~eA~ 622 (713)
...|++++|+.+|+++++++|+++.++..+|.++...|++++|+.+|+++++++|+++.+++.+|.+|...|+ ...+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888877654 45567
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005133 623 HHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI 679 (713)
Q Consensus 623 ~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~ 679 (713)
..+.+++...| ...+++.+|.++...|++++|+.+|++++++.|+ ..+...+..+
T Consensus 145 ~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~i 199 (208)
T 3urz_A 145 TDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKI 199 (208)
T ss_dssp HHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHHH
T ss_pred HHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 77777654322 2236677888888888899999999998888885 3444444444
No 87
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.77 E-value=2.1e-16 Score=166.07 Aligned_cols=237 Identities=10% Similarity=0.005 Sum_probs=147.5
Q ss_pred HHHHccCCHH-HHHHHHHcCcccCCCCHHHHHHHHHHHHHhhc----------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 440 YRMSCMYRCK-DALDVYLKLPHKHYNTGWVLSQVGKAYFEVVD----------YLEAERAFTLARRASPYSLEGMDIYST 508 (713)
Q Consensus 440 ~~l~~~g~~~-eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~eA~~~~~kal~~~p~~~~a~~~la~ 508 (713)
......|.+. +|+.++.+++..+|.+..+|...+.++...+. +++++.++..++..+|.+..+|...+.
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3334555555 67888888888888888888888888877665 567777777777777777777777777
Q ss_pred HHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 005133 509 VLYHLKE--DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKD-HETALKNFQRAVQLNPRFAYGHTLCGHEYVAL---- 581 (713)
Q Consensus 509 ~l~~~g~--~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~-~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~---- 581 (713)
++..++. +++++.++.++++.+|.+..+|...+.++...|. ++++++++.++++.+|.+..+|..++.++...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 7766663 5666666677777777777777766666666666 46666666666666666666666666666555
Q ss_pred ----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHH
Q 005133 582 ----------EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ-----------EKFEFSEHHFRMAFQISPHSSVIMS 640 (713)
Q Consensus 582 ----------g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~-----------g~~~eA~~~l~kal~~~p~~~~~~~ 640 (713)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.+++++++.|++...+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 3456666666666666666666665555444443 2355555555555555555543333
Q ss_pred HHHHHHHH---cCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005133 641 YLGTAMHA---LKRSGEAIEMMEKAILADKKNPLPMYQK 676 (713)
Q Consensus 641 ~la~~~~~---~g~~eeAl~~l~kal~~~p~~~~~~~~l 676 (713)
.++.+... .|..++...++.++++++|....-|..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 33322221 2344455555555555555444444333
No 88
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.76 E-value=6.8e-16 Score=162.16 Aligned_cols=233 Identities=12% Similarity=0.019 Sum_probs=208.6
Q ss_pred HhhcHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 005133 478 EVVDYL-EAERAFTLARRASPYSLEGMDIYSTVLYHLKE----------DMKLSYLAQELITTDRLAPQSWCAMGNCYSL 546 (713)
Q Consensus 478 ~~g~~~-eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~----------~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 546 (713)
..|++. +|+.++.+++.++|.+..+|...+.++..++. +.+++.+++.++..+|.+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 345554 79999999999999999999999999988876 6889999999999999999999999999999
Q ss_pred cC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------
Q 005133 547 QK--DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALED-FENGIRSYQSALRVDARHYNSWYGLGMVYLRQ-------- 615 (713)
Q Consensus 547 ~g--~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~-~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~-------- 615 (713)
.+ .+++++.++.++++.+|.+..+|...+.++...|. +++++.++.++++.+|.+..+|..++.++...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 99 49999999999999999999999999999999998 69999999999999999999999999999887
Q ss_pred ------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005133 616 ------EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL-----------KRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (713)
Q Consensus 616 ------g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~-----------g~~eeAl~~l~kal~~~p~~~~~~~~la~ 678 (713)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.+++++++.|++..++..++.
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 280 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence 5689999999999999999999998887777766 56899999999999999998666555554
Q ss_pred HHH---HcCCHHHHHHHHHHHHHHCCCChhHHHhc
Q 005133 679 ILL---SLEKFDEALEVLEELKEYAPRESGVYALM 710 (713)
Q Consensus 679 ~~~---~~g~~~eA~~~~~kal~l~P~~~~~~~~L 710 (713)
+.. ..|..++...++.++++++|-...-|.-|
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 433 36888999999999999999877666544
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=2.4e-18 Score=175.60 Aligned_cols=205 Identities=13% Similarity=0.094 Sum_probs=131.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCccc--------CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHK--------HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDI 505 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~ 505 (713)
.+...|..+...|++++|+..|++++.. .+....++..+|.++...|++++|+.+|++++....
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------- 116 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE-------- 116 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH--------
Confidence 3556788889999999999999998754 466778899999999999999999999999987620
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Q 005133 506 YSTVLYHLKEDMKLSYLAQELITT-DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL--------NPRFAYGHTLCGH 576 (713)
Q Consensus 506 la~~l~~~g~~~~A~~~~~kal~~-~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~--------~p~~~~a~~~lg~ 576 (713)
+.... .|....++..+|.+|...|++++|+.+|++++++ .|....++..+|.
T Consensus 117 -------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 117 -------------------KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp -------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred -------------------HHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 00000 1222345666666666666666666666666665 4444556666677
Q ss_pred HHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHH
Q 005133 577 EYVALEDFENGIRSYQSALRV---------DARHYNSWYGLGMVYLRQEK------FEFSEHHFRMAFQISPHSSVIMSY 641 (713)
Q Consensus 577 ~~~~~g~~eeAl~~~~~al~~---------~p~~~~~~~~lg~~y~~~g~------~~eA~~~l~kal~~~p~~~~~~~~ 641 (713)
++...|++++|+.+|++++++ .+.....+..++..+...+. +.++...++......|....++..
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRS 257 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 777777777777777666664 33344455555555554333 233333333332233444556777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh
Q 005133 642 LGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 642 la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
+|.+|...|++++|+.+|+++++.
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777654
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.76 E-value=4.1e-17 Score=163.12 Aligned_cols=191 Identities=12% Similarity=0.030 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 005133 499 SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP---QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAY---GHT 572 (713)
Q Consensus 499 ~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~---~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~---a~~ 572 (713)
....++.+|..+...|++++|+..++++++..|.++ .+++.+|.+|...|++++|+..|+++++..|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345667777777777777777777777777776653 56777777777777777777777777777776643 667
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------------
Q 005133 573 LCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVI-------------- 638 (713)
Q Consensus 573 ~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~-------------- 638 (713)
.+|.++...+.. ....+..++.++...|++++|+..|+++++..|++..+
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 777776653210 00011122222223445555555555555555544322
Q ss_pred ---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 639 ---MSYLGTAMHALKRSGEAIEMMEKAILADKKNP---LPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 639 ---~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
...+|.+|...|++++|+..|+++++..|+++ .+++.+|.++.++|++++|+..++++....|++.+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 25789999999999999999999999999876 67999999999999999999999999998887654
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.75 E-value=2.7e-18 Score=160.49 Aligned_cols=144 Identities=10% Similarity=0.092 Sum_probs=97.3
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 005133 508 TVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENG 587 (713)
Q Consensus 508 ~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeA 587 (713)
.++...|+.++|+..+++++..+|+.+..++.+|.+|...|++++|+++|+++++++|+++.+|..+|.+|...|++++|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 33334444444444444444444555566677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005133 588 IRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHH-FRMAFQISPHSSVIMSYLGTAMHALKR 651 (713)
Q Consensus 588 l~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~-l~kal~~~p~~~~~~~~la~~~~~~g~ 651 (713)
+.+|+++++++|+++.+++.+|.+|...|++++|.+. ++++++++|+++.++..++.++...|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777777777777777777777777777665554 467777777777777777777766654
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=7.4e-17 Score=161.23 Aligned_cols=204 Identities=12% Similarity=0.074 Sum_probs=127.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHH---HHHHHHH
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNT---GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLE---GMDIYST 508 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~---~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~---a~~~la~ 508 (713)
.+..|..++..|+|++|+..|++++...|.. ..+++.+|.+|+..|+|++|+..|+++++.+|++.. +++.+|.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 3444555555555566655555555544433 245555555555555555555555555555555432 4455555
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 005133 509 VLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGI 588 (713)
Q Consensus 509 ~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl 588 (713)
++...+.. ....+..++..+...|++++|+..|+++++..|+...++..+..+....+.
T Consensus 87 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~----- 145 (225)
T 2yhc_A 87 TNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR----- 145 (225)
T ss_dssp HHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-----
T ss_pred HHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----
Confidence 55444321 111233444455556778888888888888877776554332221111110
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 589 RSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS---VIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 589 ~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~---~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
.......+|.+|...|++++|+..|+++++..|+++ .++..+|.++.++|++++|+..++++...
T Consensus 146 ------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 146 ------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 112346789999999999999999999999999986 67999999999999999999999999998
Q ss_pred CCCChh
Q 005133 666 DKKNPL 671 (713)
Q Consensus 666 ~p~~~~ 671 (713)
.|++.+
T Consensus 214 ~~~~~~ 219 (225)
T 2yhc_A 214 SSNTLE 219 (225)
T ss_dssp CSCCCC
T ss_pred CCCchh
Confidence 887643
No 93
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.72 E-value=1.4e-16 Score=182.04 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=117.9
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 005133 513 LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQ 592 (713)
Q Consensus 513 ~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~ 592 (713)
.|++++|+..++++++.+|.+..+|..+|.++...|++++|+.+|+++++++|++..++..+|.+|...|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCC
Q 005133 593 SALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL---KRSGEAIEMMEKAILADKKN 669 (713)
Q Consensus 593 ~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~---g~~eeAl~~l~kal~~~p~~ 669 (713)
++++.+|++..++..+|.+|...|++++|++.|+++++.+|++..++..+|.++..+ |++++|+..|+++++.+|..
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 888888888888888888888888888888888888888888888888888888888 78888888888888888877
Q ss_pred hhHHHHHH
Q 005133 670 PLPMYQKA 677 (713)
Q Consensus 670 ~~~~~~la 677 (713)
...+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 77776666
No 94
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.72 E-value=9.8e-17 Score=173.33 Aligned_cols=263 Identities=10% Similarity=0.062 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCcc---cCCCCHHHHHHHHHHHH----HhhcHHHHH---------HHHHHHHHhC
Q 005133 433 LRILGEGYRMSCMYRCKDALDVYLKLPH---KHYNTGWVLSQVGKAYF----EVVDYLEAE---------RAFTLARRAS 496 (713)
Q Consensus 433 l~~l~~a~~l~~~g~~~eAi~~l~~~~~---~~~~~~~~~~~lg~~~~----~~g~~~eA~---------~~~~kal~~~ 496 (713)
-..+..-+..+..+++++|+.+++++.. .-..+..+++..+...+ ..+.+..+. +.++++-...
T Consensus 13 ~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 92 (378)
T 3q15_A 13 GVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ 92 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC
Confidence 3455566677889999999999997632 21124444433222222 223333333 4444432211
Q ss_pred C---C--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005133 497 P---Y--SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDR------LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNP 565 (713)
Q Consensus 497 p---~--~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p------~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p 565 (713)
. . ....++..|..+...|++++|+..++++++..+ ....+++.+|.+|...|++++|+.++++++++.+
T Consensus 93 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 93 KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1 1 112466789999999999999999999998743 2457899999999999999999999999998744
Q ss_pred C-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 005133 566 R-------FAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR------HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ-- 630 (713)
Q Consensus 566 ~-------~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~------~~~~~~~lg~~y~~~g~~~eA~~~l~kal~-- 630 (713)
. ...++..+|.+|...|++++|+.+|++++++.+. ...++.++|.+|..+|++++|+.+|+++++
T Consensus 173 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 173 NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 2 2457889999999999999999999999986431 246789999999999999999999999999
Q ss_pred ---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHcCC---HHHHHHHHHH
Q 005133 631 ---ISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK-----NPLPMYQKANILLSLEK---FDEALEVLEE 695 (713)
Q Consensus 631 ---~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~-----~~~~~~~la~~~~~~g~---~~eA~~~~~k 695 (713)
.+|....++..+|.++..+|++++|+.++++++++.+. ....+..++.++...|+ +.+|+.++++
T Consensus 253 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 253 REKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 67777889999999999999999999999999998543 33456778888888888 8888888776
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.71 E-value=4.1e-17 Score=156.43 Aligned_cols=164 Identities=11% Similarity=-0.020 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~ 613 (713)
.+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 345677777788888888888888888888888888888888888888888888888888887777 6666555554432
Q ss_pred -HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHcCCHHHHH
Q 005133 614 -RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN--PLPMYQKANILLSLEKFDEAL 690 (713)
Q Consensus 614 -~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~--~~~~~~la~~~~~~g~~~eA~ 690 (713)
..+...+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..+|.++..+|+.++|+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22334457788888888888888888888888888888888888888888887764 457788888888888888888
Q ss_pred HHHHHHHH
Q 005133 691 EVLEELKE 698 (713)
Q Consensus 691 ~~~~kal~ 698 (713)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.71 E-value=1e-16 Score=145.15 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=55.6
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 563 LNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYL 642 (713)
Q Consensus 563 ~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 642 (713)
++|+.+.++..+|..|+..|+|++|+..|+++++++|.++.+|..+|.+|..+|++++|+..|+++++++|+++.+++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005133 643 GTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (713)
Q Consensus 643 a~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~ 678 (713)
|.++..+|++++|+..|+++++++|++..++..++.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 444444444444444444444444444444444443
No 97
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.71 E-value=7.2e-16 Score=165.65 Aligned_cols=236 Identities=17% Similarity=0.050 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL-----EGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP------ 534 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~-----~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~------ 534 (713)
..++..+|.++...|++++|+.++++++...|... .++..++.++...|++++|...+++++...+...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45678899999999999999999999999887542 2567889999999999999999999998765432
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----C
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLN--------PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR-----H 601 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~kal~~~--------p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~-----~ 601 (713)
.++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++...+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 346789999999999999999999999874 334567788999999999999999999999998765 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-HHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCCC----h
Q 005133 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH--S-SVIM----SYLGTAMHALKRSGEAIEMMEKAILADKKN----P 670 (713)
Q Consensus 602 ~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~--~-~~~~----~~la~~~~~~g~~eeAl~~l~kal~~~p~~----~ 670 (713)
..++..+|.++...|++++|+.++++++.+.+. . .... ..++.++...|++++|..++++++...+.. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 567889999999999999999999999877322 2 2211 134566889999999999999998876643 2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 005133 671 LPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~P 701 (713)
..+..++.++...|++++|...+++++...+
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999988654
No 98
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.71 E-value=7.7e-16 Score=162.40 Aligned_cols=225 Identities=15% Similarity=0.137 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHH
Q 005133 483 LEAERAFTLARRASPYSLEGMDIYSTVLYHLK-EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQ-K-DHETALKNFQR 559 (713)
Q Consensus 483 ~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g-~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~-g-~~~~Al~~~~k 559 (713)
++|++++.+++.++|.+..+|...+.++..++ .+++++.++++++..+|++..+|...+.++... + +++++++++.+
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34555555555555555555555555555555 255555555555555555555555555555554 4 55566666666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HHHHHHH
Q 005133 560 AVQLNPRFAYGHTLCGHEYVALEDFE--------NGIRSYQSALRVDARHYNSWYGLGMVYLRQEK-------FEFSEHH 624 (713)
Q Consensus 560 al~~~p~~~~a~~~lg~~~~~~g~~e--------eAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~-------~~eA~~~ 624 (713)
+++.+|.+..+|...+.++...+.++ +++++++++++.+|.+..+|...+.++...++ +++++++
T Consensus 151 ~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 151 SLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp HTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 66666666666666666655555555 66666666666666666666666666666654 5666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHHhC------CCChhHHHHHHH
Q 005133 625 FRMAFQISPHSSVIMSYLGTAMHALKRS--------------------GEAIEMMEKAILAD------KKNPLPMYQKAN 678 (713)
Q Consensus 625 l~kal~~~p~~~~~~~~la~~~~~~g~~--------------------eeAl~~l~kal~~~------p~~~~~~~~la~ 678 (713)
+.+++..+|++..+|..+..++...|+. .+-...+...+... +..+.++..++.
T Consensus 231 ~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d 310 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLAD 310 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHH
Confidence 6666666666666666666666665543 11111111111111 345566667777
Q ss_pred HHHHcCCHHHHHHHHHHHH-HHCCCChhHH
Q 005133 679 ILLSLEKFDEALEVLEELK-EYAPRESGVY 707 (713)
Q Consensus 679 ~~~~~g~~~eA~~~~~kal-~l~P~~~~~~ 707 (713)
+|...|+.++|.+.++.+. +.+|-....|
T Consensus 311 ~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 311 SFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 7777777777777777765 4566544444
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.71 E-value=8.6e-17 Score=145.62 Aligned_cols=119 Identities=14% Similarity=0.205 Sum_probs=113.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005133 593 SALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLP 672 (713)
Q Consensus 593 ~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~ 672 (713)
++..++|+.+..+..+|..|++.|+|++|+..|+++++++|.++.++..+|.+|..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 673 MYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
|+.+|.++..+|++++|+..|+++++++|++..++..|+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 999999999999999999999999999999999998876
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.71 E-value=2.6e-16 Score=163.65 Aligned_cols=168 Identities=14% Similarity=0.050 Sum_probs=117.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 531 RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (713)
Q Consensus 531 p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~ 610 (713)
|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 55566666777777777777777777777777777777777777777777777777777777777777755555555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHcCCHHH
Q 005133 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN--PLPMYQKANILLSLEKFDE 688 (713)
Q Consensus 611 ~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~--~~~~~~la~~~~~~g~~~e 688 (713)
.+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++..+|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 66666666677777777777777777777777777777777777777777777777766 6667777777777777777
Q ss_pred HHHHHHHHHH
Q 005133 689 ALEVLEELKE 698 (713)
Q Consensus 689 A~~~~~kal~ 698 (713)
|...|++++.
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.69 E-value=1.8e-16 Score=151.89 Aligned_cols=161 Identities=10% Similarity=0.024 Sum_probs=106.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-Hc
Q 005133 503 MDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYV-AL 581 (713)
Q Consensus 503 ~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~-~~ 581 (713)
+..++..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|++++...| ++..+..++.+.. ..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 344444455555555555555555555555566666666666666666666666666666666 5555544443322 22
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHH
Q 005133 582 EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS--SVIMSYLGTAMHALKRSGEAIEMM 659 (713)
Q Consensus 582 g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~~~~g~~eeAl~~l 659 (713)
++..+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|.. ..++..+|.++..+|+.++|+..|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 333456777777777778777778888888888888888888888887777764 457777788888888888888877
Q ss_pred HHHHH
Q 005133 660 EKAIL 664 (713)
Q Consensus 660 ~kal~ 664 (713)
++++.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.68 E-value=2.4e-16 Score=165.46 Aligned_cols=222 Identities=10% Similarity=0.006 Sum_probs=176.1
Q ss_pred HccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 005133 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFE-VVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSY 521 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~ 521 (713)
+..|++++|.++++++.+..+.. ++. .+++++|+.+|.++ +.++...|++++|..
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHH
Confidence 34677888888888775543321 233 57888888888876 567888999999999
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHH
Q 005133 522 LAQELITTDRLA------PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR--F----AYGHTLCGHEYVALEDFENGIR 589 (713)
Q Consensus 522 ~~~kal~~~p~~------~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~--~----~~a~~~lg~~~~~~g~~eeAl~ 589 (713)
.+.+++++.+.. ..++..+|.+|...|++++|+.+|++++++.+. + ..++..+|.+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 999999876532 457888999999999999999999999988432 2 4678889999988 99999999
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHH
Q 005133 590 SYQSALRVDARH------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIE 657 (713)
Q Consensus 590 ~~~~al~~~p~~------~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~eeAl~ 657 (713)
+|++++.+.+.. ..++..+|.+|..+|++++|+.+|++++++.+.. ..++..+|.++..+|++++|+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999987643 5688899999999999999999999999886543 3477888999999999999999
Q ss_pred HHHHHHHhCCCChhHH-----HHHHHHHHHcCCHHHHHH
Q 005133 658 MMEKAILADKKNPLPM-----YQKANILLSLEKFDEALE 691 (713)
Q Consensus 658 ~l~kal~~~p~~~~~~-----~~la~~~~~~g~~~eA~~ 691 (713)
+|++++ ++|...... ..++..+ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 999887763 3344444 5677665554
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.68 E-value=1.2e-15 Score=158.69 Aligned_cols=167 Identities=8% Similarity=-0.063 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 498 YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHE 577 (713)
Q Consensus 498 ~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~ 577 (713)
...+.+..+|..+...|++++|...++++++.+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33333344444444444444444444444444455555666666666666666666666666666666555555555566
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHH
Q 005133 578 YVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS--SVIMSYLGTAMHALKRSGEA 655 (713)
Q Consensus 578 ~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~~~~g~~eeA 655 (713)
+...++.++|+..|++++..+|++..+++.+|.+|...|++++|+..|+++++.+|++ ..++..++.++...|+.++|
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 6666666777777777777777777777777777777777777777777777777766 66777777777777777777
Q ss_pred HHHHHHHHH
Q 005133 656 IEMMEKAIL 664 (713)
Q Consensus 656 l~~l~kal~ 664 (713)
+..|++++.
T Consensus 275 ~~~~r~al~ 283 (287)
T 3qou_A 275 ASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.68 E-value=2.6e-16 Score=165.22 Aligned_cols=196 Identities=14% Similarity=0.083 Sum_probs=158.5
Q ss_pred cCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHH
Q 005133 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS------LEGMDIYSTVLYHLKEDMK 518 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~------~~a~~~la~~l~~~g~~~~ 518 (713)
.+++++|+..|.+ .|.+|...|+|++|+.+|.+++++.+.. ..++..++.++..+|++++
T Consensus 29 ~~~~~~A~~~~~~--------------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 94 (307)
T 2ifu_A 29 KPDYDSAASEYAK--------------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPE 94 (307)
T ss_dssp SCCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 4778888877765 4778889999999999999999886532 4578889999999999999
Q ss_pred HHHHHHHHHHhCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHH
Q 005133 519 LSYLAQELITTDRL--A----PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALEDFEN 586 (713)
Q Consensus 519 A~~~~~kal~~~p~--~----~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~------~~a~~~lg~~~~~~g~~ee 586 (713)
|+.++++++++.+. + ..++..+|.+|.. |++++|+.+|++++.+.+.. ..++..+|.+|..+|++++
T Consensus 95 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 173 (307)
T 2ifu_A 95 AVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE 173 (307)
T ss_dssp GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999987543 2 3678899999988 99999999999999886643 5678899999999999999
Q ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCChHHH
Q 005133 587 GIRSYQSALRVDARH------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV-----IMSYLGTAMHALKRSGEA 655 (713)
Q Consensus 587 Al~~~~~al~~~p~~------~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~-----~~~~la~~~~~~g~~eeA 655 (713)
|+.+|++++.+.|.. ..++..+|.++...|++++|+.+|++++ +.|.... .+..++..+ ..|+.+.+
T Consensus 174 A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~ 251 (307)
T 2ifu_A 174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQL 251 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHH
Confidence 999999999986543 3478888999999999999999999999 8886532 344455544 56666554
Q ss_pred HH
Q 005133 656 IE 657 (713)
Q Consensus 656 l~ 657 (713)
..
T Consensus 252 ~~ 253 (307)
T 2ifu_A 252 LR 253 (307)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.68 E-value=1.5e-15 Score=173.51 Aligned_cols=165 Identities=14% Similarity=0.053 Sum_probs=114.8
Q ss_pred hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005133 479 VVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQ 558 (713)
Q Consensus 479 ~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~ 558 (713)
.|++++|++.|+++++.+|.+..++..+|.++...|++++|...++++++.+|.+..++..+|.+|...|++++|+++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36777788888888777777777777778877777888888888888888777777777778888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCC
Q 005133 559 RAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ---EKFEFSEHHFRMAFQISPHS 635 (713)
Q Consensus 559 kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~---g~~~eA~~~l~kal~~~p~~ 635 (713)
++++.+|++..++..+|.+|...|++++|+.+|+++++.+|++..++..+|.++... |++++|++.|+++++.+|..
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 888777777777777888888888888888888888877777777777788887777 77788888888887777777
Q ss_pred HHHHHHHH
Q 005133 636 SVIMSYLG 643 (713)
Q Consensus 636 ~~~~~~la 643 (713)
...+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 66665554
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.67 E-value=1.2e-16 Score=149.64 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=66.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005133 589 RSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668 (713)
Q Consensus 589 ~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~ 668 (713)
..+++++.++|++..+++.+|.++...|++++|+..|++++.++|.++.+|..+|.++..+|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 33444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 005133 669 NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 669 ~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
++.+|+.+|.+|..+|++++|+..|++++++.|+.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 55555555555555555555555555555555543
No 107
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.67 E-value=7.9e-15 Score=154.70 Aligned_cols=235 Identities=10% Similarity=-0.025 Sum_probs=205.6
Q ss_pred cCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-CHHHHHH
Q 005133 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVV-DYLEAERAFTLARRASPYSLEGMDIYSTVLYHL-K-EDMKLSY 521 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g-~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~-g-~~~~A~~ 521 (713)
.+..++|++++.+++..+|.+..+|...+.++...| .++++++++.+++..+|.+..+|...+.++..+ + ++++++.
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 456689999999999999999999999999999999 599999999999999999999999999999998 7 8899999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-------HHH
Q 005133 522 LAQELITTDRLAPQSWCAMGNCYSLQKDHE--------TALKNFQRAVQLNPRFAYGHTLCGHEYVALED-------FEN 586 (713)
Q Consensus 522 ~~~kal~~~p~~~~~~~~la~~~~~~g~~~--------~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~-------~ee 586 (713)
++.++++.+|.+..+|...+.++...+.++ ++++++.++++.+|.+..+|..++.++...++ +++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 999999999999999999999999988887 99999999999999999999999999999887 799
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhC------CCCHHHHH
Q 005133 587 GIRSYQSALRVDARHYNSWYGLGMVYLRQEKF--------------------EFSEHHFRMAFQIS------PHSSVIMS 640 (713)
Q Consensus 587 Al~~~~~al~~~p~~~~~~~~lg~~y~~~g~~--------------------~eA~~~l~kal~~~------p~~~~~~~ 640 (713)
+++++++++..+|++..+|+.+..++...|+- ..........+... +.++.++.
T Consensus 227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 99999999999999999999999999887753 23333333333222 46788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH-HhCCCChhHHHHHHHH
Q 005133 641 YLGTAMHALKRSGEAIEMMEKAI-LADKKNPLPMYQKANI 679 (713)
Q Consensus 641 ~la~~~~~~g~~eeAl~~l~kal-~~~p~~~~~~~~la~~ 679 (713)
.++.+|...|+.++|+++|+... +.+|-....|...+..
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 99999999999999999999987 5578766777665543
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.65 E-value=3e-16 Score=146.80 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005133 553 ALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (713)
Q Consensus 553 Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~ 632 (713)
+...+++++.++|++..+++.+|.++...|++++|+.+|++++.++|+++.+|+.+|.+|...|++++|+..|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33456666777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005133 633 PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (713)
Q Consensus 633 p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~ 670 (713)
|+++.+++.+|.+|..+|++++|+..|++++++.|+.+
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888888888888888887644
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.65 E-value=4.8e-15 Score=146.81 Aligned_cols=176 Identities=12% Similarity=-0.009 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHH
Q 005133 518 KLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE----DFENGIRSYQS 593 (713)
Q Consensus 518 ~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g----~~eeAl~~~~~ 593 (713)
+|+.+++++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 355566666654 56778888888888888888888888888764 567888888888877 6 78888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 005133 594 ALRVDARHYNSWYGLGMVYLR----QEKFEFSEHHFRMAFQISP--HSSVIMSYLGTAMHA----LKRSGEAIEMMEKAI 663 (713)
Q Consensus 594 al~~~p~~~~~~~~lg~~y~~----~g~~~eA~~~l~kal~~~p--~~~~~~~~la~~~~~----~g~~eeAl~~l~kal 663 (713)
+++ +.++.+++.||.+|.. .+++++|+.+|+++++..+ ..+.+++.||.+|.. .+++++|+.+|++++
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 854 4678888888888877 7788888888888887766 347788888888888 778888888888888
Q ss_pred HhCCCChhHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHHCC
Q 005133 664 LADKKNPLPMYQKANILLSL-E-----KFDEALEVLEELKEYAP 701 (713)
Q Consensus 664 ~~~p~~~~~~~~la~~~~~~-g-----~~~eA~~~~~kal~l~P 701 (713)
+. +.++.+++.+|.+|... | ++++|+.+|+++.+...
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77 56777888888888754 3 78888888888887754
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=3.9e-17 Score=173.98 Aligned_cols=180 Identities=16% Similarity=0.109 Sum_probs=101.2
Q ss_pred HHHHHhhcHHHHHHHHHH----HHHhCCCCHHHHHHHHHHHH------------HccCHHHHHHHHHHHHHhCCCCHHHH
Q 005133 474 KAYFEVVDYLEAERAFTL----ARRASPYSLEGMDIYSTVLY------------HLKEDMKLSYLAQELITTDRLAPQSW 537 (713)
Q Consensus 474 ~~~~~~g~~~eA~~~~~k----al~~~p~~~~a~~~la~~l~------------~~g~~~~A~~~~~kal~~~p~~~~~~ 537 (713)
.++...+.+++|+..+.. ++.+.|.. ++...+.... .++++++|+..++++++..|..+.++
T Consensus 73 ~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~ 150 (336)
T 1p5q_A 73 ENLDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV 150 (336)
T ss_dssp GGGTCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH
T ss_pred CccccchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH
Confidence 344456789999999999 88888876 3333333221 33444555555555555555555666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 005133 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRF---------------AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY 602 (713)
Q Consensus 538 ~~la~~~~~~g~~~~Al~~~~kal~~~p~~---------------~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~ 602 (713)
..+|.++...|++++|+.+|++++.+.|.+ ..+|..+|.+|...|++++|+.+|+++++++|+++
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 230 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 230 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 666666666666666666666666666555 34455555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005133 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEA 655 (713)
Q Consensus 603 ~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeA 655 (713)
.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++|
T Consensus 231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555444
No 111
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.64 E-value=7.5e-16 Score=157.52 Aligned_cols=203 Identities=12% Similarity=0.017 Sum_probs=108.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHhCCCCH---------
Q 005133 471 QVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIY-------STVLYHLKEDMKLSYLAQELITTDRLAP--------- 534 (713)
Q Consensus 471 ~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~l-------a~~l~~~g~~~~A~~~~~kal~~~p~~~--------- 534 (713)
..|..+ .-+++.+|.+.|.++++.+|...++|..+ +.++..+++..+++..+.+.+.+.|...
T Consensus 12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 334443 35666667777777777766666666666 5566666666666666666665554432
Q ss_pred ------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Q 005133 535 ------------QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH- 601 (713)
Q Consensus 535 ------------~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~- 601 (713)
+++..++.++...|+|++|.+.|..++...|.+. +++.+|.++...+++++|+.+|+++....+..
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 2333345555555555555555555555555544 55555555555555555555555444331110
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005133 602 -YNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS--PH-SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676 (713)
Q Consensus 602 -~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~--p~-~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~l 676 (713)
..+++.+|.++..+|++++|+.+|++++.-. |. ...+++.+|.++.++|+.++|...|++++..+|+ ..++..|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 2345555555555555555555555554322 22 3345555555555555555555555555555554 4444333
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=3.3e-17 Score=174.53 Aligned_cols=191 Identities=15% Similarity=0.174 Sum_probs=171.3
Q ss_pred HHHHHHccCCHHHHHHHHHc----CcccCCCCHHHHHHHHHHHH------------HhhcHHHHHHHHHHHHHhCCCCHH
Q 005133 438 EGYRMSCMYRCKDALDVYLK----LPHKHYNTGWVLSQVGKAYF------------EVVDYLEAERAFTLARRASPYSLE 501 (713)
Q Consensus 438 ~a~~l~~~g~~~eAi~~l~~----~~~~~~~~~~~~~~lg~~~~------------~~g~~~eA~~~~~kal~~~p~~~~ 501 (713)
.|..+...+.+++|+..+.. .+...|.. +|...|.... .++++++|+..|++++...|....
T Consensus 71 ~g~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~ 148 (336)
T 1p5q_A 71 EGENLDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQST 148 (336)
T ss_dssp CGGGGTCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHH
T ss_pred CCCccccchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHH
Confidence 34433345689999999998 77777776 5566665543 568889999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005133 502 GMDIYSTVLYHLKEDMKLSYLAQELITTDRLA---------------PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR 566 (713)
Q Consensus 502 a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~---------------~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~ 566 (713)
++..+|.++...|++++|+..|++++++.|.+ ..+|..+|.+|...|++++|+.+|+++++++|.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998 699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 005133 567 FAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS-EHHFRMAFQ 630 (713)
Q Consensus 567 ~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA-~~~l~kal~ 630 (713)
+..+++.+|.+|...|++++|+..|+++++++|++..++..++.++...|++++| ...|++++.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 456777664
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.63 E-value=4.9e-16 Score=158.88 Aligned_cols=197 Identities=15% Similarity=0.039 Sum_probs=175.5
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHhCCCCH----------------
Q 005133 512 HLKEDMKLSYLAQELITTDRLAPQSWCAM-------GNCYSLQKDHETALKNFQRAVQLNPRFA---------------- 568 (713)
Q Consensus 512 ~~g~~~~A~~~~~kal~~~p~~~~~~~~l-------a~~~~~~g~~~~Al~~~~kal~~~p~~~---------------- 568 (713)
.-++...|...|.++++.+|..+++|..+ +.++...+++.+++..+++.+.+.|...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 46889999999999999999999999999 8999999999999999999999876543
Q ss_pred -----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH
Q 005133 569 -----YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS--SVIMSY 641 (713)
Q Consensus 569 -----~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~--~~~~~~ 641 (713)
.++..++.++...|+|++|.+.|..++...|++. +.+.+|.++++.++|++|+.+|+++....+.. ..+++.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 3455688999999999999999999999999888 99999999999999999999999887653221 358999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC--CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHHhc
Q 005133 642 LGTAMHALKRSGEAIEMMEKAILAD--KK-NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALM 710 (713)
Q Consensus 642 la~~~~~~g~~eeAl~~l~kal~~~--p~-~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~L 710 (713)
+|.++..+|++++|+.+|++++... |. .+.+++.+|.++.++|+.++|...|++++..+|+ ..++..|
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 9999999999999999999998543 44 5678999999999999999999999999999999 8887665
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.63 E-value=1.9e-14 Score=128.64 Aligned_cols=133 Identities=29% Similarity=0.471 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 570 GHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL 649 (713)
Q Consensus 570 a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 649 (713)
++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45566666666666666666666666666666666666666666666777777777666666666666666677777777
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 650 KRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 650 g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
|++++|+.++++++...|.+..++..+|.++...|++++|+.+++++++.+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 77777777777777666666666777777777777777777777777766664
No 115
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.63 E-value=3.1e-16 Score=169.13 Aligned_cols=235 Identities=13% Similarity=-0.002 Sum_probs=92.8
Q ss_pred ccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 005133 444 CMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLA 523 (713)
Q Consensus 444 ~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~ 523 (713)
..|++++|.++++++ +.+.+|..+|.++...|++++|++.|.++ .+..++...+.++...|++++|+.++
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 456677888888777 22357888888888888888888888664 34556777777777888888888877
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 005133 524 QELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYN 603 (713)
Q Consensus 524 ~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~ 603 (713)
+.+.+..++ +.+...++.+|.+.|+++++.++++. | +..+|..+|..+...|+|++|+.+|.++ .
T Consensus 85 ~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~ 149 (449)
T 1b89_A 85 QMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------S 149 (449)
T ss_dssp -------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------T
T ss_pred HHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------h
Confidence 777764333 66777788888888888887777642 3 3347888888888888888888888866 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005133 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSL 683 (713)
Q Consensus 604 ~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~ 683 (713)
.|..+|.++.++|+|++|++.++++ .++.+|...+.++...|+++.|..+... +.. ++.-...++.+|.+.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDR 220 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHC
Confidence 5778888888888888888888887 4677888888888888888888666554 223 344455677788888
Q ss_pred CCHHHHHHHHHHHHHHCCCChhHHHhccC
Q 005133 684 EKFDEALEVLEELKEYAPRESGVYALMGC 712 (713)
Q Consensus 684 g~~~eA~~~~~kal~l~P~~~~~~~~Lg~ 712 (713)
|++++|+.++++++.+++....+|..||.
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~i 249 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAI 249 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 88888888888888888877777776653
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=2.3e-14 Score=141.90 Aligned_cols=184 Identities=14% Similarity=0.093 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHH
Q 005133 484 EAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK----DHETALKNFQR 559 (713)
Q Consensus 484 eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g----~~~~Al~~~~k 559 (713)
+|+.+|+++.+. .++.+++.+|.++...+++++|+.+++++.+. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 345555555543 45555556666665556666666666665543 456777777777777 5 78888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 005133 560 AVQLNPRFAYGHTLCGHEYVA----LEDFENGIRSYQSALRVDA--RHYNSWYGLGMVYLR----QEKFEFSEHHFRMAF 629 (713)
Q Consensus 560 al~~~p~~~~a~~~lg~~~~~----~g~~eeAl~~~~~al~~~p--~~~~~~~~lg~~y~~----~g~~~eA~~~l~kal 629 (713)
+.+ +.++.+++.+|.+|.. .+++++|+.+|+++++..+ .++.+++.||.+|.. .+++++|+.+|++++
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 754 4677888888888877 7788888888888887766 347888888888888 778888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005133 630 QISPHSSVIMSYLGTAMHAL-K-----RSGEAIEMMEKAILADKKNPLPMYQKA 677 (713)
Q Consensus 630 ~~~p~~~~~~~~la~~~~~~-g-----~~eeAl~~l~kal~~~p~~~~~~~~la 677 (713)
+. +.++.+++.+|.+|... | ++++|+.+|+++++.. +..+...++
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~ 207 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFD 207 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 77 56667788888888764 2 7888888888888764 344444443
No 117
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.61 E-value=3.6e-14 Score=126.84 Aligned_cols=134 Identities=31% Similarity=0.554 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~ 614 (713)
.+|+.+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46778888888888888888888888888888888888888888888889999999988888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005133 615 QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~ 668 (713)
.|++++|+.+++++++..|.+..++..+|.++...|++++|+.++++++..+|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 899999999999888888888888888898888889999999999888888775
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.61 E-value=1.8e-15 Score=140.87 Aligned_cols=120 Identities=9% Similarity=0.003 Sum_probs=89.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005133 555 KNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (713)
Q Consensus 555 ~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~ 634 (713)
..|++++.++|.+..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.+|...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005133 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (713)
Q Consensus 635 ~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~ 674 (713)
++.+++.+|.+|..+|++++|+.+|++++++.|+++....
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 7777777777777777777777777777777776665543
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=3.1e-15 Score=170.16 Aligned_cols=185 Identities=11% Similarity=0.094 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHH
Q 005133 518 KLSYLAQELITTDRLAPQSWCAMGNCYSLQKD----------HETALKNFQRAVQLNPRFAYGHTLCGHEYVALE--DFE 585 (713)
Q Consensus 518 ~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~----------~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g--~~e 585 (713)
+|+..+.+++..+|++..+|...+.++...++ +++++++++++++.+|++..+|...+.++...+ +++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~ 126 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 126 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHH
Confidence 34444444444555555555555555555544 677777777777777777777777777777777 567
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------C
Q 005133 586 NGIRSYQSALRVDARHYNSWYGLGMVYLRQE-KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL--------------K 650 (713)
Q Consensus 586 eAl~~~~~al~~~p~~~~~~~~lg~~y~~~g-~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~--------------g 650 (713)
+|+.+++++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..++.++..+ +
T Consensus 127 ~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~ 206 (567)
T 1dce_A 127 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN 206 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHH
Confidence 7777777777777777777777777777777 777777777777777777777777777777764 5
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH------------HHHHHHHHHHHCCC
Q 005133 651 RSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDE------------ALEVLEELKEYAPR 702 (713)
Q Consensus 651 ~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~e------------A~~~~~kal~l~P~ 702 (713)
.+++|++++++++..+|++..+|+.++.++...+++++ |+..|.+++.++|.
T Consensus 207 ~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 207 VLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp HHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred HHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 57888888888888888888888888888888887655 44455666655554
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.60 E-value=2.8e-15 Score=139.59 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005133 587 GIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (713)
Q Consensus 587 Al~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~ 666 (713)
+-..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHH
Q 005133 667 KKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVY 707 (713)
Q Consensus 667 p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 707 (713)
|+++.+++.+|.+|..+|++++|+.+|++++++.|+++...
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999999999999999999999877553
No 121
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.60 E-value=3.5e-14 Score=147.02 Aligned_cols=247 Identities=9% Similarity=0.010 Sum_probs=196.3
Q ss_pred HHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 005133 442 MSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSY 521 (713)
Q Consensus 442 l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~ 521 (713)
.+-.|+|..++.-..++-...+ ....+.+.++|+.+|++.... ..+....+...++..+. ++ ++.
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~--~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a~~ 87 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTD--NTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---NIE 87 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCC--HHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---CCH
T ss_pred HHHhhHHHHHHHHHHhcCccch--HHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---HHH
Confidence 3568999999997776644333 356778889999999987521 12222334444444432 22 778
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 005133 522 LAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNP--RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA 599 (713)
Q Consensus 522 ~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p--~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p 599 (713)
.+++.++..+.....+..+|.++...|++++|++++.+++..+| ....++..++.++...|+.+.|.+.++++.+.+|
T Consensus 88 ~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 88 ELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 88888877666777888999999999999999999999999887 7889999999999999999999999999999998
Q ss_pred C------CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Q 005133 600 R------HYNSWYGLGMVYLRQE--KFEFSEHHFRMAFQISPH--SSVIMSYLGTAMHALKRSGEAIEMMEKAILA---- 665 (713)
Q Consensus 600 ~------~~~~~~~lg~~y~~~g--~~~eA~~~l~kal~~~p~--~~~~~~~la~~~~~~g~~eeAl~~l~kal~~---- 665 (713)
+ .......-|++.+..| ++.+|...|+++.+..|+ ....+++ ++..+|++++|...++.+++.
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 3 3333444465577667 999999999999888876 3334444 899999999999999987776
Q ss_pred ------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHH
Q 005133 666 ------DKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 666 ------~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 708 (713)
+|+++.++.+++.+...+|+ +|.+++.++.+..|+++.+.-
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 48899999999999999998 899999999999999987643
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.59 E-value=3.7e-15 Score=154.47 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNC 543 (713)
Q Consensus 464 ~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 543 (713)
..+..++.+|..++..|+|++|+..|++++..+|.+..++..+|.++...|++++|+..++++++++|.+..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44566666666666666666666666666666666555555555555555555555555555555555444444445555
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCC
Q 005133 544 YSLQKDHETALKNFQRAVQLNPR 566 (713)
Q Consensus 544 ~~~~g~~~~Al~~~~kal~~~p~ 566 (713)
|...|++++|+..|+++++++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc
Confidence 55555555555555444444443
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.59 E-value=5.9e-15 Score=152.91 Aligned_cols=198 Identities=15% Similarity=0.141 Sum_probs=161.1
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 497 PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGH 576 (713)
Q Consensus 497 p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~ 576 (713)
|.....+..+|..+...|++++|+..+++++..+|.++.+|..+|.+|...|++++|+..++++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005133 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAI 656 (713)
Q Consensus 577 ~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl 656 (713)
+|...|++++|+..|+++++++|++...+...+.... ...++...........+.+..+...++.++ .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 9999999999999999999998865322222222222 122233333344456777777777777765 68999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 005133 657 EMMEKAILADKKNPLPMYQKANILLSL-EKFDEALEVLEELKEY 699 (713)
Q Consensus 657 ~~l~kal~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~kal~l 699 (713)
+.++++++.+|++......++.++... +.+++|.+.|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998888888888777776 7788999999888764
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.58 E-value=6.9e-15 Score=135.58 Aligned_cols=126 Identities=10% Similarity=0.001 Sum_probs=88.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005133 555 KNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (713)
Q Consensus 555 ~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~ 634 (713)
..|++++.++|.+...++.+|.++...|++++|+..|++++..+|+++.+|+.+|.+|...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35566666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005133 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANIL 680 (713)
Q Consensus 635 ~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~ 680 (713)
++.+++.+|.++..+|++++|+.+|++++++.|+++.....+..+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 7777777777777777777777777777777776666554444443
No 125
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.57 E-value=1.3e-15 Score=164.38 Aligned_cols=237 Identities=13% Similarity=0.057 Sum_probs=125.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 005133 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (713)
Q Consensus 436 l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~ 515 (713)
...|..+...|++++|++.|.++ .++..+..++.++...|+|++|+.+++.+++..++ +.....++.++.++|+
T Consensus 36 s~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~ 109 (449)
T 1b89_A 36 SQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNR 109 (449)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCC
Confidence 34555568899999999999874 35568889999999999999999999999986444 6667889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (713)
Q Consensus 516 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al 595 (713)
+.++..+++. | +..+|..+|..+...|+|++|..+|.++ ..|..+|.++..+|++++|++.++++
T Consensus 110 l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA- 174 (449)
T 1b89_A 110 LAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA- 174 (449)
T ss_dssp HHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-
Confidence 9998887742 3 3469999999999999999999999987 47889999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 005133 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQ 675 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~ 675 (713)
.++.+|..++.++...|+|+.|..+... +.. +++-...++.+|.+.|++++|+.++++++.+++.+...+..
T Consensus 175 ----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~fte 246 (449)
T 1b89_A 175 ----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 246 (449)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred ----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 4789999999999999999999887765 323 44445578899999999999999999999999999999999
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHHHCC
Q 005133 676 KANILLS--LEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 676 la~~~~~--~g~~~eA~~~~~kal~l~P 701 (713)
+|.+|.+ .++..++++.|...+.+.|
T Consensus 247 l~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 247 LAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 9988874 4566777777765555554
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.57 E-value=9.2e-15 Score=134.73 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=112.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005133 589 RSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668 (713)
Q Consensus 589 ~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~ 668 (713)
..|++++.++|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHH
Q 005133 669 NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 669 ~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 708 (713)
++.+++.+|.+|..+|++++|+.+|++++++.|+++..+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 9999999999999999999999999999999998876554
No 127
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.56 E-value=2.5e-11 Score=140.00 Aligned_cols=226 Identities=5% Similarity=-0.022 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005133 482 YLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLS-YLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRA 560 (713)
Q Consensus 482 ~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~-~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~ka 560 (713)
.+.....|++++...|.+++.|..++..+...|+.++|. .++++++...|.+...|+.++.+....|++++|..+|+++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345678999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHhC-----------CC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-
Q 005133 561 VQLN-----------PR-----------FAYGHTLCGHEYVALEDFENGIRSYQSALRV-DARHYNSWYGLGMVYLRQE- 616 (713)
Q Consensus 561 l~~~-----------p~-----------~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~-~p~~~~~~~~lg~~y~~~g- 616 (713)
+... |. ...+|..++.+..+.|..+.|..+|.+|++. .+....+|...|.+....+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 9752 42 3457888999999999999999999999987 4455678888888777765
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHcCCHHHHHHHH
Q 005133 617 KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK---NPLPMYQKANILLSLEKFDEALEVL 693 (713)
Q Consensus 617 ~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~ 693 (713)
+++.|..+|+.+++..|+++..+...+......|+.+.|..+|++++...|+ ...+|..........|+.+.+...+
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999998873 5677888888899999999999999
Q ss_pred HHHHHHCCCChhHH
Q 005133 694 EELKEYAPRESGVY 707 (713)
Q Consensus 694 ~kal~l~P~~~~~~ 707 (713)
+++.+..|+++.+-
T Consensus 565 ~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 565 KRFFEKFPEVNKLE 578 (679)
T ss_dssp HHHHHHSTTCCHHH
T ss_pred HHHHHhCCCCcHHH
Confidence 99999999976543
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.56 E-value=1.6e-13 Score=142.70 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA------YGHTLCGHEYVALEDFENGIRSYQSALRVDARH------Y 602 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~------~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~------~ 602 (713)
..+...+..+...|++++|++.+.++++..+... ..++.+|.++...|++++|+.+|++++...+.. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556666677777777777777776655433 234556666677777777777777777654332 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------C
Q 005133 603 NSWYGLGMVYLRQEKFEFSEHHFRMAF---QISPHSS----VIMSYLGTAMHALKRSGEAIEMMEKAILADKK------N 669 (713)
Q Consensus 603 ~~~~~lg~~y~~~g~~~eA~~~l~kal---~~~p~~~----~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~------~ 669 (713)
.++..+|.+|...|++++|+.+|++++ +..+++. .++.++|.+|..+|++++|+.++++++++.+. .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 567777777777777777777777777 3344432 46677777777777777777777777765422 1
Q ss_pred hhHHHHHHHHHHHcCCHHHH-HHHHHHHHHH
Q 005133 670 PLPMYQKANILLSLEKFDEA-LEVLEELKEY 699 (713)
Q Consensus 670 ~~~~~~la~~~~~~g~~~eA-~~~~~kal~l 699 (713)
..+++.+|.+|..+|++++| ..+|++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45667777777777777777 6667777654
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.55 E-value=8.6e-14 Score=136.57 Aligned_cols=134 Identities=16% Similarity=0.207 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~ 613 (713)
...++.+|..+...|++++|+..|++++ +| .+.++..+|.+|...|++++|+.+|++++..+|.+..+++.+|.+|.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3467788999999999999999999885 33 67889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005133 614 RQEKFEFSEHHFRMAFQISPHSS----------------VIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (713)
Q Consensus 614 ~~g~~~eA~~~l~kal~~~p~~~----------------~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~ 670 (713)
..|++++|+..|+++++..|.+. .++..+|.++...|++++|+.+|++++++.|++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 99999999999999999887766 8888999999999999999999999999888763
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.55 E-value=2.4e-14 Score=136.65 Aligned_cols=130 Identities=18% Similarity=0.297 Sum_probs=100.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HH
Q 005133 544 YSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMV-YLRQEKF--EF 620 (713)
Q Consensus 544 ~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~-y~~~g~~--~e 620 (713)
+...|++++|+..++++++.+|.+..+|..+|.+|...|++++|+.+|+++++++|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 44567788888888888888888888888888888888888888888888888888888888888888 7777887 88
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005133 621 SEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (713)
Q Consensus 621 A~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~ 673 (713)
|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|.+....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 88888888888888888888888888888888888888888888887765544
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.55 E-value=1.7e-13 Score=134.50 Aligned_cols=132 Identities=16% Similarity=0.204 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 501 EGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA 580 (713)
Q Consensus 501 ~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~ 580 (713)
..++.+|.++...|++++|+..+++++ +| ++.+|+.+|.+|...|++++|+.+|++++..+|....++..+|.+|..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 346778888888888888888888885 33 678888888888888888888888888888888888888888888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005133 581 LEDFENGIRSYQSALRVDARHY----------------NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (713)
Q Consensus 581 ~g~~eeAl~~~~~al~~~p~~~----------------~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~ 635 (713)
.|++++|+..|+++++..|.+. .+++.+|.+|...|++++|+..|+++++..|.+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888888888777665 888888888888888888888888888888875
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.55 E-value=1.8e-13 Score=128.04 Aligned_cols=130 Identities=15% Similarity=0.196 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA 648 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 648 (713)
..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHcCCHHHHHHHHHHHHH
Q 005133 649 LKRSGEAIEMMEKAILADKKNPLPMYQK--ANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 649 ~g~~eeAl~~l~kal~~~p~~~~~~~~l--a~~~~~~g~~~eA~~~~~kal~ 698 (713)
.|++++|+.+|+++++..|.+..++..+ +..+...|++++|+..++++..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 5555555555555555555555555332 2235555566666665555544
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=7.2e-15 Score=143.39 Aligned_cols=158 Identities=13% Similarity=0.050 Sum_probs=94.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----------------H
Q 005133 540 MGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY----------------N 603 (713)
Q Consensus 540 la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~----------------~ 603 (713)
.+......|++++|.+.+.......+.....+..+|..+...|++++|+.+|++++.+.|.++ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334444455555555555544444444455566666666666666666666666666655554 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005133 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSL 683 (713)
Q Consensus 604 ~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~ 683 (713)
++..+|.+|...|++++|+.+++++++.+|.+..+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHH-HHHHHHH
Q 005133 684 EKFDEAL-EVLEELK 697 (713)
Q Consensus 684 g~~~eA~-~~~~kal 697 (713)
++.+++. ..|.+++
T Consensus 170 ~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 170 KEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHC----------
T ss_pred HHHHHHHHHHHHHHh
Confidence 7766665 3344443
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.3e-13 Score=156.68 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=156.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--
Q 005133 549 DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALED----------FENGIRSYQSALRVDARHYNSWYGLGMVYLRQE-- 616 (713)
Q Consensus 549 ~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~----------~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g-- 616 (713)
..++|++.+.+++..+|++..+|...+.++...|+ +++|+..++++++.+|+++.+|+..+.++...+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 44788999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc------------
Q 005133 617 KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK-RSGEAIEMMEKAILADKKNPLPMYQKANILLSL------------ 683 (713)
Q Consensus 617 ~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g-~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~------------ 683 (713)
++++|++.++++++.+|.+..+|...++++...| .+++++++++++++.+|.+..+|..++.++..+
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 7899999999999999999999999999999999 899999999999999999999999999999885
Q ss_pred --CCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 684 --EKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 684 --g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
+.+++|++++.+++.++|++..+|+.++
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~ 233 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHR 233 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 6689999999999999999999998765
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.54 E-value=2.9e-13 Score=126.56 Aligned_cols=132 Identities=19% Similarity=0.203 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~ 613 (713)
+..+..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+.+|+++++.+|.+..+++.+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcCChHHHHHHHHHHHHh
Q 005133 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGT--AMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 614 ~~g~~~eA~~~l~kal~~~p~~~~~~~~la~--~~~~~g~~eeAl~~l~kal~~ 665 (713)
..|++++|+.+|+++++..|.+..++..++. .+...|++++|+..++++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999988855444 488889999999999887654
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.1e-13 Score=124.20 Aligned_cols=112 Identities=16% Similarity=0.138 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA 648 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 648 (713)
..+..+|..+...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444455544444444444444444444555444
Q ss_pred cCChHHHHHHHHHHHHhC------CCChhHHHHHHHHH
Q 005133 649 LKRSGEAIEMMEKAILAD------KKNPLPMYQKANIL 680 (713)
Q Consensus 649 ~g~~eeAl~~l~kal~~~------p~~~~~~~~la~~~ 680 (713)
+|++++|+..|+++++++ |.+..++..++.+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 455555555555444444 44444444444433
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.54 E-value=4.9e-14 Score=134.49 Aligned_cols=126 Identities=17% Similarity=0.294 Sum_probs=66.5
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCh--HHHH
Q 005133 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA-MHALKRS--GEAI 656 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~-~~~~g~~--eeAl 656 (713)
..|++++|+..|++++..+|.+..++..+|.+|...|++++|+.+|+++++.+|.++.++..+|.+ +...|++ ++|+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555555555 4455555 5555
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 657 EMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 657 ~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
.+|+++++.+|.++.+++.+|.++...|++++|+.+|+++++++|++..
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 5555555555555555555555555555555555555555555555443
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.5e-13 Score=123.19 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (713)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y 612 (713)
.+..|..+|..+...|++++|+.+|+++++++|.++.+|..+|.++...|++++|+..|+++++++|++..+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 005133 613 LRQEKFEFSEHHFRMAFQIS------PHSSVIMSYLGTAMHA 648 (713)
Q Consensus 613 ~~~g~~~eA~~~l~kal~~~------p~~~~~~~~la~~~~~ 648 (713)
...|++++|+..|+++++++ |.+..++..++.+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999 8888888888877654
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.52 E-value=7.2e-13 Score=137.68 Aligned_cols=172 Identities=13% Similarity=0.048 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 545 (713)
...+...+..++..|+|++|++.+.++++..+....... ....++.+|.++.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~----------------------------~~~~~~~~~~~~~ 126 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ----------------------------FLQWQYYVAAYVL 126 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH----------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH----------------------------HHHHHHHHHHHHh
Confidence 344455666666666666666666666666554322110 0133556888899
Q ss_pred hcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHH
Q 005133 546 LQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALEDFENGIRSYQSAL---RVDARHY----NSWYGLGMVY 612 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~------~~a~~~lg~~~~~~g~~eeAl~~~~~al---~~~p~~~----~~~~~lg~~y 612 (713)
..|++++|+.+|++++...+.. ..++..+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|
T Consensus 127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence 9999999999999999875433 5688999999999999999999999999 4456543 6899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHH-HHHHHHHHHh
Q 005133 613 LRQEKFEFSEHHFRMAFQISPH------SSVIMSYLGTAMHALKRSGEA-IEMMEKAILA 665 (713)
Q Consensus 613 ~~~g~~~eA~~~l~kal~~~p~------~~~~~~~la~~~~~~g~~eeA-l~~l~kal~~ 665 (713)
..+|++++|+.++++++++.+. ...++..+|.+|..+|++++| ..+|++++.+
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 9999999999999999987532 267899999999999999999 8889998865
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-13 Score=122.63 Aligned_cols=120 Identities=15% Similarity=0.214 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 565 PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGT 644 (713)
Q Consensus 565 p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~ 644 (713)
|....++..+|.++...|++++|+.+|+++++.+|.+..++..+|.+|...|++++|+.+++++++..|.+..++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 33455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005133 645 AMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE 684 (713)
Q Consensus 645 ~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g 684 (713)
++...|++++|+.+|+++++.+|.+..++..++.++..+|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666665554
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=1.1e-13 Score=130.48 Aligned_cols=118 Identities=18% Similarity=0.121 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 564 NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLG 643 (713)
Q Consensus 564 ~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 643 (713)
.+..+..+..+|.++...|++++|+.+|+++++++|+++.+++.+|.+|...|++++|+.+|+++++++|++..+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005133 644 TAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (713)
Q Consensus 644 ~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~ 681 (713)
.+|..+|++++|+.+|+++++++|++..+++.++....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999887776665443
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.51 E-value=3e-14 Score=138.98 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=116.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----------------HH
Q 005133 507 STVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA----------------YG 570 (713)
Q Consensus 507 a~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~----------------~a 570 (713)
+.+...+|.++++...+.......+.....+..+|..+...|++++|+.+|++++.+.|.++ .+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33444455555555444444444444466788888888888888888888888888887776 78
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (713)
Q Consensus 571 ~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 650 (713)
+..+|.++...|++++|+.+|+++++++|++..+++.+|.+|...|++++|+.+|+++++++|.+..++..++.++..++
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ChHHHH-HHHHHH
Q 005133 651 RSGEAI-EMMEKA 662 (713)
Q Consensus 651 ~~eeAl-~~l~ka 662 (713)
+.+++. ..|.++
T Consensus 171 ~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 171 EARKKDKLTFGGM 183 (198)
T ss_dssp HHHC---------
T ss_pred HHHHHHHHHHHHH
Confidence 877776 334333
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.51 E-value=1.9e-13 Score=121.75 Aligned_cols=118 Identities=20% Similarity=0.237 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 647 (713)
...+..+|.++...|++++|+..|++++...|++..++..+|.++...|++++|+.+++++++..|.++.++..+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005133 648 ALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK 685 (713)
Q Consensus 648 ~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~ 685 (713)
..|++++|+.+|+++++..|++..++..++.++..+|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555544
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.51 E-value=2.8e-13 Score=140.83 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=129.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHH
Q 005133 539 AMGNCYSLQKDHETALKNFQRAVQLNPRFAY------GHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWY 606 (713)
Q Consensus 539 ~la~~~~~~g~~~~Al~~~~kal~~~p~~~~------a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~------~~~~~ 606 (713)
..+..+...|++++|+..+++++...+..+. .+..+|.++...+++++|+.+|++++.+.+.. ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 4466778888999999999988887665544 23357888888889999999999999864432 34688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHH
Q 005133 607 GLGMVYLRQEKFEFSEHHFRMAFQIS---PH----SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPM 673 (713)
Q Consensus 607 ~lg~~y~~~g~~~eA~~~l~kal~~~---p~----~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~------~~~~ 673 (713)
.+|.+|...|++++|+.+|+++++.. +. ...++.++|.+|..+|++++|+.++++++++.+.. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999998531 12 23478899999999999999999999999875433 6788
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHHC
Q 005133 674 YQKANILLSLE-KFDEALEVLEELKEYA 700 (713)
Q Consensus 674 ~~la~~~~~~g-~~~eA~~~~~kal~l~ 700 (713)
+.+|.+|..+| .+++|+.+|++++.+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999999 4799999999998753
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.51 E-value=2.9e-13 Score=120.59 Aligned_cols=123 Identities=17% Similarity=0.237 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 531 RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (713)
Q Consensus 531 p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~ 610 (713)
|.....+..+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.++++++..+|++..+++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 005133 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSG 653 (713)
Q Consensus 611 ~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~e 653 (713)
++...|++++|+.+|+++++..|.+..++..+|.++..+|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999988763
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.50 E-value=3e-13 Score=127.48 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=105.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 530 DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (713)
Q Consensus 530 ~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg 609 (713)
.+..+..|+.+|.++...|++++|+.+|+++++++|.+..+|..+|.+|...|++++|+.+|+++++++|++..+|+.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 610 MVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (713)
Q Consensus 610 ~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 647 (713)
.+|...|++++|+.+|+++++++|++..++...+....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999998887666655433
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.50 E-value=3.2e-13 Score=121.12 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 531 RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (713)
Q Consensus 531 p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~ 610 (713)
|.....|+.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|.+..+++.+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 45668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005133 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR 651 (713)
Q Consensus 611 ~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~ 651 (713)
++...|++++|+.+|+++++.+|.+..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988999999999887764
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.47 E-value=2e-12 Score=114.00 Aligned_cols=116 Identities=26% Similarity=0.389 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 647 (713)
..++..+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005133 648 ALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSL 683 (713)
Q Consensus 648 ~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~ 683 (713)
..|++++|+.+|+++++..|.++.++..++.++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555443
No 149
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.46 E-value=4.3e-14 Score=156.97 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=107.7
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 005133 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---------------AYGHTLCGH 576 (713)
Q Consensus 512 ~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~---------------~~a~~~lg~ 576 (713)
.++++++|...++.+++..|.....|..+|..++..|+|++|+..|+++++++|.+ ..+|..+|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777778888888888888888888888888888888877 566777777
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005133 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAI 656 (713)
Q Consensus 577 ~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl 656 (713)
+|..+|++++|+.+|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..++++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777766665
Q ss_pred H
Q 005133 657 E 657 (713)
Q Consensus 657 ~ 657 (713)
.
T Consensus 406 ~ 406 (457)
T 1kt0_A 406 R 406 (457)
T ss_dssp H
T ss_pred H
Confidence 3
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.46 E-value=3.3e-12 Score=112.60 Aligned_cols=121 Identities=27% Similarity=0.534 Sum_probs=106.8
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 530 DRLA-PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGL 608 (713)
Q Consensus 530 ~p~~-~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~l 608 (713)
+|.. ..+|+.+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.+|++++...|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 3444 678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 609 GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (713)
Q Consensus 609 g~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 650 (713)
|.++...|++++|+.+|+++++..|.+..++..+|.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999988887654
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.45 E-value=1.3e-12 Score=135.67 Aligned_cols=170 Identities=14% Similarity=0.070 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 005133 468 VLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQ 547 (713)
Q Consensus 468 ~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 547 (713)
.+...+..++..|+|++|+..+++++...+........ ...+..+|.++...
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~~ 128 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQF----------------------------LQWQYYVAAYVLKK 128 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHH----------------------------HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHH----------------------------HHHHHHHHHHHHcc
Confidence 34445677778888888888888887766654432100 12344578888888
Q ss_pred CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Q 005133 548 KDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALEDFENGIRSYQSALRVD-------ARHYNSWYGLGMVYLR 614 (713)
Q Consensus 548 g~~~~Al~~~~kal~~~p~~------~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~-------p~~~~~~~~lg~~y~~ 614 (713)
+++++|+.+|++++...+.. ..++..+|.+|...|++++|+.+|+++++.. +....+++++|.+|..
T Consensus 129 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 3u3w_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 99999999999999864332 3468899999999999999999999999531 2234578999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC-hHHHHHHHHHHHHh
Q 005133 615 QEKFEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKR-SGEAIEMMEKAILA 665 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~-~eeAl~~l~kal~~ 665 (713)
+|++++|+.++++++++.+.. +.++..+|.+|..+|+ +++|+.+|++++.+
T Consensus 209 ~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999999999875433 7789999999999995 69999999999876
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.45 E-value=1e-12 Score=119.03 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 564 NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLG 643 (713)
Q Consensus 564 ~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 643 (713)
+|..+..+..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC
Q 005133 644 TAMHALKRSGEAIEMMEKAILADKK 668 (713)
Q Consensus 644 ~~~~~~g~~eeAl~~l~kal~~~p~ 668 (713)
.++...|++++|+..|++++.+.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 5555555555555555555555554
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.44 E-value=1.5e-12 Score=117.59 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=26.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005133 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (713)
Q Consensus 571 ~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~ 632 (713)
+..+|..++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~ 72 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG 72 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 33344444444444444444444444444444444444444444444444444444444433
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.44 E-value=8.3e-13 Score=119.28 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-------hHH
Q 005133 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP-------LPM 673 (713)
Q Consensus 601 ~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~-------~~~ 673 (713)
.+.++..+|.+++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++. .++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999988654 478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhHHH
Q 005133 674 YQKANILLSLEKFDEALEVLEELKEYAPRESGVYA 708 (713)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 708 (713)
..+|.++..+|++++|+++|+++++..|+ ++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 88999999999999999999999999886 44443
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.44 E-value=1.4e-12 Score=118.17 Aligned_cols=121 Identities=20% Similarity=0.217 Sum_probs=106.9
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGL 608 (713)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~l 608 (713)
..+..+..++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|+++++++|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 005133 609 GMVYLRQEKFEFSEHHFRMAFQISPH-----SSVIMSYLGTAMHAL 649 (713)
Q Consensus 609 g~~y~~~g~~~eA~~~l~kal~~~p~-----~~~~~~~la~~~~~~ 649 (713)
|.+|...|++++|+..|++++++.|+ +..+...+..+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887 566666666655444
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.43 E-value=1.2e-12 Score=126.77 Aligned_cols=154 Identities=13% Similarity=0.118 Sum_probs=79.0
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHH
Q 005133 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV------DARHYNSWYGLGMVYLRQEKFE 619 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~------~p~~~~~~~~lg~~y~~~g~~~ 619 (713)
..|++++|.+.++......+....++..+|.++...|++++|+.++++++.+ .+....++..+|.+|...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555333332222233455555555555555555555555555552 2223445555566666666666
Q ss_pred HHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--C----hhHHHHHHHHHHHcCCH
Q 005133 620 FSEHHFRMAFQI---SPHS----SVIMSYLGTAMHALKRSGEAIEMMEKAILADKK--N----PLPMYQKANILLSLEKF 686 (713)
Q Consensus 620 eA~~~l~kal~~---~p~~----~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~--~----~~~~~~la~~~~~~g~~ 686 (713)
+|+.++++++.. .+++ ..++..+|.++...|++++|+.++++++.+.+. + ..++..+|.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666655554 2222 234555666666666666666666665544211 1 12245566666666666
Q ss_pred HHHHHHHHHHHHH
Q 005133 687 DEALEVLEELKEY 699 (713)
Q Consensus 687 ~eA~~~~~kal~l 699 (713)
++|+.++++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.43 E-value=9.2e-13 Score=117.97 Aligned_cols=99 Identities=18% Similarity=0.117 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005133 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE 684 (713)
Q Consensus 605 ~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g 684 (713)
++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHHCCCC
Q 005133 685 KFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 685 ~~~eA~~~~~kal~l~P~~ 703 (713)
++++|+..|+++++++|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 5555555555555555554
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.42 E-value=1.6e-13 Score=152.41 Aligned_cols=147 Identities=11% Similarity=0.196 Sum_probs=118.0
Q ss_pred HhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 005133 478 EVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA---------------PQSWCAMGN 542 (713)
Q Consensus 478 ~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~---------------~~~~~~la~ 542 (713)
.++++++|+..|+.++...|.....+..+|.+++..|++.+|+..|++++++.|.+ ..+|+.+|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888877 578888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005133 543 CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSE 622 (713)
Q Consensus 543 ~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~ 622 (713)
+|..+|++++|+.+|+++++++|.+..+|+.+|.+|..+|++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888887776
Q ss_pred HH
Q 005133 623 HH 624 (713)
Q Consensus 623 ~~ 624 (713)
..
T Consensus 406 ~~ 407 (457)
T 1kt0_A 406 RR 407 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.42 E-value=5.2e-12 Score=110.20 Aligned_cols=108 Identities=15% Similarity=0.207 Sum_probs=46.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (713)
Q Consensus 571 ~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 650 (713)
+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005133 651 RSGEAIEMMEKAILADKKNPLPMYQKAN 678 (713)
Q Consensus 651 ~~eeAl~~l~kal~~~p~~~~~~~~la~ 678 (713)
++++|+.+|+++++..|+++.++..++.
T Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4444444444444444444444443333
No 160
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.41 E-value=1.2e-11 Score=128.03 Aligned_cols=184 Identities=9% Similarity=-0.061 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005133 485 AERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDR--LAPQSWCAMGNCYSLQKDHETALKNFQRAVQ 562 (713)
Q Consensus 485 A~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p--~~~~~~~~la~~~~~~g~~~~Al~~~~kal~ 562 (713)
|+..|++.+...+.....+..+|.++...|++++|+.++++.+..+| ...+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444333323333333444444444444444444444444443 3445555555555555555555555555555
Q ss_pred hCC------CCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 005133 563 LNP------RFAYGHTLCGHEYVALE--DFENGIRSYQSALRVDAR--HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI- 631 (713)
Q Consensus 563 ~~p------~~~~a~~~lg~~~~~~g--~~eeAl~~~~~al~~~p~--~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~- 631 (713)
.+| +.......-|++.+..| ++.+|..+|+++....|+ ....+++ ++..+|++++|...++.+++.
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 555 12222222343444444 566666666665555554 1222222 555666666666666555444
Q ss_pred ---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005133 632 ---------SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (713)
Q Consensus 632 ---------~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~ 673 (713)
+|+++.++.+++.+...+|+ +|.++++++.+..|+++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 35556666555555555554 55566666666666655543
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.41 E-value=6.4e-12 Score=109.62 Aligned_cols=113 Identities=11% Similarity=0.104 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~ 613 (713)
+..++.+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAM 646 (713)
Q Consensus 614 ~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 646 (713)
..|++++|+.+|+++++..|.++.++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999998888887764
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.41 E-value=1.3e-12 Score=122.73 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-hHHHHH
Q 005133 598 DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP-LPMYQK 676 (713)
Q Consensus 598 ~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~-~~~~~l 676 (713)
+|....++.++|.+|...|++++|+..++++++++|.++.+++.+|.+|..+|++++|+..|++++.++|+++ .+...+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4444555666666666666666666666666666666666666666666666666666666666666666555 444445
Q ss_pred HHHHHHc
Q 005133 677 ANILLSL 683 (713)
Q Consensus 677 a~~~~~~ 683 (713)
+.+....
T Consensus 139 ~~~~~~~ 145 (162)
T 3rkv_A 139 KIVTERR 145 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.41 E-value=1.6e-12 Score=116.32 Aligned_cols=98 Identities=13% Similarity=0.029 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE 616 (713)
Q Consensus 537 ~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g 616 (713)
++.+|..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|++..+++.+|.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44444444455555555555555555555444555555555555555555555555555555544444445555554445
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 005133 617 KFEFSEHHFRMAFQISPH 634 (713)
Q Consensus 617 ~~~eA~~~l~kal~~~p~ 634 (713)
++++|+..|+++++.+|.
T Consensus 100 ~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHhCcC
Confidence 555555555444444443
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.6e-12 Score=115.30 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005133 565 PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSY 641 (713)
Q Consensus 565 p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 641 (713)
|.....+..+|..+...|++++|+.+|+++++.+|++ ..++..+|.+|...|++++|+.+++++++..|.+..+++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3444555555555555555555555555555555544 4555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005133 642 LGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANIL 680 (713)
Q Consensus 642 la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~ 680 (713)
+|.++...|++++|+.+|+++++++|++..++..++.+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 555555555555555555555555555555555544443
No 165
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.40 E-value=1e-12 Score=122.15 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 005133 570 GHTLCGHEYVALEDFENGIRSYQSALRVDAR-------HY-----NSWYGLGMVYLRQEKFEFSEHHFRMAFQI------ 631 (713)
Q Consensus 570 a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~-------~~-----~~~~~lg~~y~~~g~~~eA~~~l~kal~~------ 631 (713)
.+..+|..+...|+|++|+..|+++++++|+ +. .+|.++|.++..+|+|++|+..|++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444455555555555555555555555554 22 26666777777777777777777777666
Q ss_pred -CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005133 632 -SPHSSVIM----SYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676 (713)
Q Consensus 632 -~p~~~~~~----~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~l 676 (713)
+|++..+| +++|.++..+|++++|+..|+++++++|++..+.-.+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 77776666 7777777777777777777777777766665544333
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.40 E-value=2.2e-12 Score=121.22 Aligned_cols=120 Identities=12% Similarity=0.165 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQL------------------NPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~------------------~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al 595 (713)
...+...|..++..|+|++|+..|.+++.+ +|....+|..+|.+|...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467888899999999999999999999988 66777899999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChH
Q 005133 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS-VIMSYLGTAMHALKRSG 653 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~-~~~~~la~~~~~~g~~e 653 (713)
+++|+++.+++.+|.+|...|++++|+..|+++++++|++. .+...++.+....++..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 66777777776655443
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.40 E-value=1.5e-12 Score=121.00 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHh----
Q 005133 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH-------SSV-----IMSYLGTAMHALKRSGEAIEMMEKAILA---- 665 (713)
Q Consensus 602 ~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~-------~~~-----~~~~la~~~~~~g~~eeAl~~l~kal~~---- 665 (713)
...+..+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++.++|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567889999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCChhHH----HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChhH
Q 005133 666 ---DKKNPLPM----YQKANILLSLEKFDEALEVLEELKEYAPRESGV 706 (713)
Q Consensus 666 ---~p~~~~~~----~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 706 (713)
+|++..+| +++|.++..+|++++|+..|+++++++|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999999999999999999987654
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.38 E-value=3.3e-12 Score=123.72 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=116.1
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHH
Q 005133 513 LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL------NPRFAYGHTLCGHEYVALEDFEN 586 (713)
Q Consensus 513 ~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~------~p~~~~a~~~lg~~~~~~g~~ee 586 (713)
.|++++|...++.+....+....++..+|.++...|++++|+.++++++.+ .+....++..+|.++...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 444555554333332222245677888888888888888888888888874 33446778889999999999999
Q ss_pred HHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCChH
Q 005133 587 GIRSYQSALRV---DARH----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP--HS----SVIMSYLGTAMHALKRSG 653 (713)
Q Consensus 587 Al~~~~~al~~---~p~~----~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p--~~----~~~~~~la~~~~~~g~~e 653 (713)
|+.++++++.+ .+++ ..++..+|.++...|++++|+.++++++...+ .+ ..++..+|.++...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 99999999887 4432 45688899999999999999999999987632 22 235678999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 005133 654 EAIEMMEKAILADK 667 (713)
Q Consensus 654 eAl~~l~kal~~~p 667 (713)
+|+.++++++++..
T Consensus 165 ~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 165 EAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987643
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=9.9e-12 Score=113.61 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=108.3
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 005133 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSW 605 (713)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~ 605 (713)
..|.....++.+|..+...|++++|+.+|+++++.+|++ ..++..+|.+|...|++++|+.+|+++++.+|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 346678899999999999999999999999999999987 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 647 (713)
+.+|.+|...|++++|+.+|+++++.+|++..++..++.+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999999988888777653
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.37 E-value=1e-13 Score=154.62 Aligned_cols=126 Identities=20% Similarity=0.225 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~ 614 (713)
..+..+|.++...|++++|+++|+++++++|.+..+|..+|.+|..+|++++|+..|+++++++|+++.+++.+|.+|..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34455666666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCChHHHHHHHH
Q 005133 615 QEKFEFSEHHFRMAFQISPHSSVIMSYLGTA--MHALKRSGEAIEMME 660 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~--~~~~g~~eeAl~~l~ 660 (713)
+|++++|++.|++++++.|++..++..++.+ +...|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777777777777766666666666 666677777777776
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.36 E-value=2.7e-12 Score=111.08 Aligned_cols=106 Identities=22% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHHHH
Q 005133 598 DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK--NPLPMYQ 675 (713)
Q Consensus 598 ~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~--~~~~~~~ 675 (713)
+|++..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|+++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 35555556666666666666666666666666666666666666666666666666666666666666666 6666666
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHCCCC
Q 005133 676 KANILLSL-EKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 676 la~~~~~~-g~~~eA~~~~~kal~l~P~~ 703 (713)
+|.++... |++++|++++++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 66666666 66666666666666666554
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.36 E-value=1.2e-11 Score=110.77 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=54.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 005133 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHY---NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGT 644 (713)
Q Consensus 571 ~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~---~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~ 644 (713)
++.+|.++...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++..|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34444555555555555555555555555444 445555555555555555555555555555554 444555555
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005133 645 AMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (713)
Q Consensus 645 ~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~ 678 (713)
++..+|++++|+..|++++...|+++.+...+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 5555555555555555555555554444443333
No 173
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=3.2e-11 Score=139.14 Aligned_cols=224 Identities=8% Similarity=-0.093 Sum_probs=199.3
Q ss_pred HHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 005133 449 KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAE-RAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELI 527 (713)
Q Consensus 449 ~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~-~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal 527 (713)
+....+|++++...|..+.+|+..+..+...|+.++|. +.|++++...|.+...|..++.+....|+.++|..+|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred HhC-----------CC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcc-C
Q 005133 528 TTD-----------RL-----------APQSWCAMGNCYSLQKDHETALKNFQRAVQL-NPRFAYGHTLCGHEYVALE-D 583 (713)
Q Consensus 528 ~~~-----------p~-----------~~~~~~~la~~~~~~g~~~~Al~~~~kal~~-~p~~~~a~~~lg~~~~~~g-~ 583 (713)
... |. ...+|...+.+..+.|..+.|..+|.+|++. .+....+|...|.+....+ +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 752 43 3458999999999999999999999999987 4455677877777776665 4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHH
Q 005133 584 FENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH---SSVIMSYLGTAMHALKRSGEAIEMME 660 (713)
Q Consensus 584 ~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~---~~~~~~~la~~~~~~g~~eeAl~~l~ 660 (713)
++.|..+|+++++..|+++..|..++......|+.+.|..+|++++...|+ ...+|..........|+.+.+..+++
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998873 45678888888889999999999999
Q ss_pred HHHHhCCCChhH
Q 005133 661 KAILADKKNPLP 672 (713)
Q Consensus 661 kal~~~p~~~~~ 672 (713)
++.+..|++...
T Consensus 566 R~~~~~P~~~~~ 577 (679)
T 4e6h_A 566 RFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHSTTCCHH
T ss_pred HHHHhCCCCcHH
Confidence 999999986543
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.35 E-value=3e-13 Score=150.94 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 500 LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYV 579 (713)
Q Consensus 500 ~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~ 579 (713)
..++..+|.++...|++++|+..++++++.+|.+..+|..+|.+|..+|++++|+.+|+++++++|.++.+++.+|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCCHHH
Q 005133 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMV--YLRQEKFEFSEHHFR-----------MAFQISPHSSVI 638 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~--y~~~g~~~eA~~~l~-----------kal~~~p~~~~~ 638 (713)
.+|++++|+..|+++++++|++..++..++.+ +..+|++++|++.++ +++.+.|.....
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 99999999999999999999999999999888 888899999999999 777777665443
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.35 E-value=2e-11 Score=109.23 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA---YGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYGL 608 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~---~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~---~~~~~~l 608 (713)
..++.+|.++...|++++|+..|+++++..|.+. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3577889999999999999999999999998887 789999999999999999999999999999998 8889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 609 GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (713)
Q Consensus 609 g~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 650 (713)
|.+|...|++++|+..|+++++..|++..+......+....+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999998877666655544433
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.34 E-value=5.4e-12 Score=109.14 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 005133 565 PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH--SSVIMSYL 642 (713)
Q Consensus 565 p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~--~~~~~~~l 642 (713)
|++..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|. +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4444555555555555555555555555555555555555555555555555555555555555555555 55555555
Q ss_pred HHHHHHc-CChHHHHHHHHHHHHhCCC
Q 005133 643 GTAMHAL-KRSGEAIEMMEKAILADKK 668 (713)
Q Consensus 643 a~~~~~~-g~~eeAl~~l~kal~~~p~ 668 (713)
|.++... |++++|++++++++...|.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 5555555 5555555555555555554
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.34 E-value=7.2e-12 Score=111.51 Aligned_cols=112 Identities=13% Similarity=0.238 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHH
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS-------SVIMSY 641 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~-------~~~~~~ 641 (713)
..+..+|.++...|++++|+.+|++++..+|.++.++..+|.+|...|++++|+.+|++++...|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555555555555555555444433 444555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005133 642 LGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (713)
Q Consensus 642 la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~ 681 (713)
+|.++...|++++|+.+|+++++..| ++..+..++.+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 55555555555555555555555544 3444444444433
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.34 E-value=1.1e-11 Score=110.26 Aligned_cols=118 Identities=20% Similarity=0.271 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHH
Q 005133 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-------YNSW 605 (713)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~-------~~~~ 605 (713)
.+..++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+.+|++++...|.+ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999999999999999999988776 8899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR 651 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~ 651 (713)
+.+|.+|...|++++|+.+|+++++..| ++..+..++.+....++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 57888888877765543
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.33 E-value=1.2e-12 Score=139.18 Aligned_cols=156 Identities=9% Similarity=0.073 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005133 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (713)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y 612 (713)
....+..+|..+...|++++|+.+|++++.+.|.+. .+...++++++...+. ..+++++|.+|
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 378899999999999999999999999999988654 1334455555554432 24788999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHHcCCHHHHHH
Q 005133 613 LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI-LLSLEKFDEALE 691 (713)
Q Consensus 613 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~-~~~~g~~~eA~~ 691 (713)
..+|+|++|+.+|+++++++|++..+++.+|.+|..+|++++|+.+|+++++++|++..++..++.+ ....+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988888 445677888889
Q ss_pred HHHHHHHHCCCChh
Q 005133 692 VLEELKEYAPRESG 705 (713)
Q Consensus 692 ~~~kal~l~P~~~~ 705 (713)
.|.+++...|+++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 99999998887653
No 180
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.30 E-value=6.5e-12 Score=116.47 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Q 005133 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK----------FEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL--- 649 (713)
Q Consensus 583 ~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~----------~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~--- 649 (713)
.+++|+..++++++++|+++.+|+++|.++...++ +++|+..|+++++++|+...+|+++|.+|..+
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 34444444444444444444444444444444333 34555555555555555555555555555554
Q ss_pred --------CChHHHHHHHHHHHHhCCCCh
Q 005133 650 --------KRSGEAIEMMEKAILADKKNP 670 (713)
Q Consensus 650 --------g~~eeAl~~l~kal~~~p~~~ 670 (713)
|++++|+.+|++|++++|++.
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 367777777777777777653
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.30 E-value=1.6e-11 Score=132.20 Aligned_cols=140 Identities=11% Similarity=0.150 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~ 613 (713)
...|..+|..+...|++++|+..|++++++.+... +....++....+|.+..++.++|.+|.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999888533211 111133334455666677777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Q 005133 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALE 691 (713)
Q Consensus 614 ~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 691 (713)
.+|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777766654
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.30 E-value=3e-12 Score=136.25 Aligned_cols=156 Identities=10% Similarity=0.065 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005133 498 YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHE 577 (713)
Q Consensus 498 ~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~ 577 (713)
.....+..+|.+++..|++.+|+..|++++...|.+. .+...+++.++...+. ..+|..+|.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 4478899999999999999999999999999998754 2334455555554432 2478889999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHH
Q 005133 578 YVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH-ALKRSGEAI 656 (713)
Q Consensus 578 ~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~-~~g~~eeAl 656 (713)
|..+|++++|+.+|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.+.. ..+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998888844 456788888
Q ss_pred HHHHHHHHhCCCCh
Q 005133 657 EMMEKAILADKKNP 670 (713)
Q Consensus 657 ~~l~kal~~~p~~~ 670 (713)
..|.+++...|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999998888664
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.28 E-value=1.9e-11 Score=112.70 Aligned_cols=98 Identities=17% Similarity=0.252 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------Chh
Q 005133 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKK------NPL 671 (713)
Q Consensus 604 ~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~------~~~ 671 (713)
++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++...+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44455555555555555555555555443221 334555555666666666666666555544211 133
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 005133 672 PMYQKANILLSLEKFDEALEVLEELKEYAP 701 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~~~kal~l~P 701 (713)
++..+|.++...|++++|+.++++++++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666543
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=5.4e-11 Score=129.89 Aligned_cols=202 Identities=10% Similarity=0.013 Sum_probs=112.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHcCcccCCCCH-----------------HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 005133 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTG-----------------WVLSQVGKAYFEVVDYLEAERAFTLARRASP 497 (713)
Q Consensus 435 ~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~-----------------~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p 497 (713)
.+.+|..+...|+|++|++.|.++++..+... .++..+|.+|...|++++|++++.+++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777766554422 2456666677777777777776666665543
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHH
Q 005133 498 YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN------PRFAYGH 571 (713)
Q Consensus 498 ~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~------p~~~~a~ 571 (713)
....+.. ...+...++.++...|++++|+.++++++... +....++
T Consensus 87 ~~~~~~~----------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 87 QFAKSKT----------------------------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp TSCHHHH----------------------------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HccchHH----------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 3211100 01223344555555566666666666555431 1123455
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHH
Q 005133 572 TLCGHEYVALEDFENGIRSYQSALRV------DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS---PHS----SVI 638 (713)
Q Consensus 572 ~~lg~~~~~~g~~eeAl~~~~~al~~------~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~---p~~----~~~ 638 (713)
..+|.+|...|+|++|+.++++++.. .+....++..+|.+|...|++++|..++++++... +.. ..+
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 55666666666666666666665543 12234456666666666666666666666665442 111 224
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 005133 639 MSYLGTAMHALKRSGEAIEMMEKAIL 664 (713)
Q Consensus 639 ~~~la~~~~~~g~~eeAl~~l~kal~ 664 (713)
+..+|.++...|++++|..+|.+++.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555566666666666666666554
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.28 E-value=2.8e-11 Score=130.33 Aligned_cols=140 Identities=12% Similarity=0.118 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 500 LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYV 579 (713)
Q Consensus 500 ~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~ 579 (713)
...+..+|..+...|++++|+..|+++++..+..+ +.....+....+|....+|..+|.+|.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999998543221 111233444456666777888888888
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005133 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIE 657 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~ 657 (713)
.+|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888887777776654
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.27 E-value=1.5e-11 Score=114.02 Aligned_cols=91 Identities=19% Similarity=0.289 Sum_probs=71.7
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALED----------FENGIRSYQSALRVDARHYNSWYGLGMVYLRQ 615 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~----------~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~ 615 (713)
+.+.|++|++.++++++++|.++.+|+.+|.++...++ +++|+..|+++++++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 34566777777777777777777777777777776655 45888888888888888888888888888877
Q ss_pred C-----------CHHHHHHHHHHHHHhCCCCH
Q 005133 616 E-----------KFEFSEHHFRMAFQISPHSS 636 (713)
Q Consensus 616 g-----------~~~eA~~~l~kal~~~p~~~ 636 (713)
| ++++|+.+|++|++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 4 89999999999999999875
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.26 E-value=3.3e-11 Score=111.06 Aligned_cols=134 Identities=20% Similarity=0.294 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 005133 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------ 601 (713)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~------~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~------ 601 (713)
..++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3567888899999999999999999988874432 2478889999999999999999999998875432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005133 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH------SSVIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (713)
Q Consensus 602 ~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~------~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p 667 (713)
..++..+|.++...|++++|+.+++++++..+. ...++..+|.++...|++++|+.++++++++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999876322 245778899999999999999999999988754
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.26 E-value=6.6e-12 Score=111.24 Aligned_cols=91 Identities=13% Similarity=0.218 Sum_probs=43.6
Q ss_pred cCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005133 582 EDFENGIRSYQSALRV---DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEM 658 (713)
Q Consensus 582 g~~eeAl~~~~~al~~---~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~ 658 (713)
|++++|+.+|+++++. +|++..++..+|.+|...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444445555555444 3444444555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhCCCChhH
Q 005133 659 MEKAILADKKNPLP 672 (713)
Q Consensus 659 l~kal~~~p~~~~~ 672 (713)
|++++...|+++.+
T Consensus 84 ~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 84 LLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHCCCHHH
T ss_pred HHHHHHhCCCcHHH
Confidence 55555544444443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.26 E-value=9.7e-12 Score=110.13 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=84.5
Q ss_pred hcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005133 546 LQKDHETALKNFQRAVQL---NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSE 622 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~---~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~ 622 (713)
..|++++|+.+|++++++ +|.+..++..+|.+|...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357888999999999988 58888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005133 623 HHFRMAFQISPHSSVIMSYLGTAMHAL 649 (713)
Q Consensus 623 ~~l~kal~~~p~~~~~~~~la~~~~~~ 649 (713)
..|++++...|+++.+......+....
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 999999999998887655444443333
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.1e-10 Score=127.56 Aligned_cols=216 Identities=11% Similarity=0.005 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 005133 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSL 546 (713)
Q Consensus 467 ~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 546 (713)
......|..+...|+|++|++.|.++++..|.........+..... .... ..++..+|.+|..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~----------~~al~~l~~~y~~ 67 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKR-------RNEQ----------ETSILELGQLYVT 67 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHH-------HHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHH-------hhhH----------HHHHHHHHHHHHH
Confidence 4566788889999999999999999999888653322111111111 1111 2346789999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH
Q 005133 547 QKDHETALKNFQRAVQLNPRFA------YGHTLCGHEYVALEDFENGIRSYQSALRVDA------RHYNSWYGLGMVYLR 614 (713)
Q Consensus 547 ~g~~~~Al~~~~kal~~~p~~~------~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p------~~~~~~~~lg~~y~~ 614 (713)
.|++++|++++.+++...+... .+...+|.++...|++++|+.++++++...+ ....++..+|.+|..
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (434)
T 4b4t_Q 68 MGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ 147 (434)
T ss_dssp HTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 9999999999999988755432 3455678888889999999999999987632 336789999999999
Q ss_pred cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CC----hhHHHHHHHHHH
Q 005133 615 QEKFEFSEHHFRMAFQIS------PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK---KN----PLPMYQKANILL 681 (713)
Q Consensus 615 ~g~~~eA~~~l~kal~~~------p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p---~~----~~~~~~la~~~~ 681 (713)
.|+|++|+.++++++... +....++..+|.+|...|++++|..++++++...+ .. ...+..+|.++.
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 999999999999998752 23356899999999999999999999999987643 22 345677899999
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 005133 682 SLEKFDEALEVLEELKEY 699 (713)
Q Consensus 682 ~~g~~~eA~~~~~kal~l 699 (713)
..|++++|..+|.++++.
T Consensus 228 ~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 228 EDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SSSCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 999999999999999874
No 191
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=99.24 E-value=6.7e-12 Score=115.53 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhhccchhhHHHHHhhhhcCCCch----------hHHHHHHHHhhcCCHHHHHHHHhcC--------CCc-
Q 005133 4 ILTDCVQNSLRYFMYRNAIFLCERLCAEFPSEV----------NLQLLATCYLQNNQAYAAYNILKGT--------QMA- 64 (713)
Q Consensus 4 ~l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~----------~~~llA~~~~~~~~~~~A~~~l~~~--------~~~- 64 (713)
.|+++|+..++.++|++|+++++.|++....+. .++++|+.+|..|+|.+|...+++. +.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 488999999999999999999999998875322 5699999999999999999999872 111
Q ss_pred ---------------------chhHHHHHHHhhcCChhHHHHhhCCCCCCCccCcch---HHHHHHHHHHHH
Q 005133 65 ---------------------LSRYLFAVACYQMDLLSEAEAALSPVNEPSAEIPNG---AAGHYLMGLIYR 112 (713)
Q Consensus 65 ---------------------~~~~l~A~~~~~l~~~~ea~~~L~~~~~~~~~~p~~---a~~~~llg~~~~ 112 (713)
+++|.+|+|+.+++++++|+.+|+ .||.. ..|+.+||++|.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le-------~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD-------GIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH-------TSCGGGCCHHHHHHHHHHCC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh-------cCCchhcCHHHHHHHHHHhc
Confidence 699999999999999999999996 57766 559999999985
No 192
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.15 E-value=2.6e-08 Score=111.26 Aligned_cols=261 Identities=9% Similarity=-0.022 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHh---CCCCHHHHHHHHH
Q 005133 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVD-YLEAERAFTLARRA---SPYSLEGMDIYST 508 (713)
Q Consensus 433 l~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~-~~eA~~~~~kal~~---~p~~~~a~~~la~ 508 (713)
...+.++...+-.++++.+..+|++++...| +..+|..........++ .+.....|+.++.. ++.....|..++.
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 3444555555556889999999999988777 66677666666555552 35566777777764 5667777777776
Q ss_pred HHH----HccCHHHHHHHHHHHHHhCCCCHH-HHHHHHH-----------------------------------------
Q 005133 509 VLY----HLKEDMKLSYLAQELITTDRLAPQ-SWCAMGN----------------------------------------- 542 (713)
Q Consensus 509 ~l~----~~g~~~~A~~~~~kal~~~p~~~~-~~~~la~----------------------------------------- 542 (713)
.+. ..++.+.+..+|++++........ .|.....
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~ 173 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence 643 235566777777777764222211 1110000
Q ss_pred -----HHHhcCC---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 543 -----CYSLQKD---------HETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGL 608 (713)
Q Consensus 543 -----~~~~~g~---------~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~l 608 (713)
+-+..++ .+.....|++++...|..+..|...+..+...|+.++|..+|++++.. |.+...|...
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y 252 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY 252 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 0011111 234556777777777777777777777777777777777777777777 7654443332
Q ss_pred HH----------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 609 GM----------------------------------------VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA 648 (713)
Q Consensus 609 g~----------------------------------------~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 648 (713)
+. .+.+.+..+.|...|++| ...+....+|...|.+...
T Consensus 253 ~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 253 GLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYY 331 (493)
T ss_dssp HHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH
T ss_pred HhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHH
Confidence 22 222345566666666666 3222344455555555555
Q ss_pred cC-ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 649 LK-RSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 649 ~g-~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
.+ +.+.|..+|+.+++..|+.+..+...+......|+.+.|...|+++
T Consensus 332 ~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54 4666777777777666666666666666666666666666666654
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.04 E-value=1.7e-09 Score=94.88 Aligned_cols=81 Identities=21% Similarity=0.326 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005133 587 GIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (713)
Q Consensus 587 Al~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~ 666 (713)
|+..|+++++.+|+++.+++.+|.+|...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred C
Q 005133 667 K 667 (713)
Q Consensus 667 p 667 (713)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 4
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.02 E-value=3.7e-10 Score=97.74 Aligned_cols=91 Identities=8% Similarity=0.111 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVIMSYL 642 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~------~~~~~~l 642 (713)
.++..+|.++...|++++|+..|+++++.+|.++.++..+|.+|...|++++|+..|+++++++|++ ..++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555555555555 4455555
Q ss_pred HHHHHHcCChHHHHHHH
Q 005133 643 GTAMHALKRSGEAIEMM 659 (713)
Q Consensus 643 a~~~~~~g~~eeAl~~l 659 (713)
|.++..+|++++|+..+
T Consensus 85 ~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHhHhhhHhHH
Confidence 55555555555444433
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.1e-10 Score=101.04 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHH
Q 005133 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMY 674 (713)
Q Consensus 601 ~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~------~~~~~ 674 (713)
+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 005133 675 QKANILLSLEKFDEALEVLEE 695 (713)
Q Consensus 675 ~la~~~~~~g~~~eA~~~~~k 695 (713)
.+|.++..+|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988888766654
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.02 E-value=2.7e-09 Score=93.62 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005133 552 TALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 552 ~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~ 631 (713)
+|+..|+++++.+|.++.+++.+|.+|...|++++|+.+|+++++.+|++..+++.+|.+|...|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777777777788778888888888888888888888888888888888888888888888888888888888888777
Q ss_pred CCC
Q 005133 632 SPH 634 (713)
Q Consensus 632 ~p~ 634 (713)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 653
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.99 E-value=3.2e-09 Score=88.23 Aligned_cols=82 Identities=24% Similarity=0.359 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005133 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (713)
Q Consensus 602 ~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~ 681 (713)
..+++.+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|+++++.+|.++.++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred Hc
Q 005133 682 SL 683 (713)
Q Consensus 682 ~~ 683 (713)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 198
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=2.2e-07 Score=103.67 Aligned_cols=203 Identities=7% Similarity=-0.027 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005133 483 LEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQ 562 (713)
Q Consensus 483 ~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~ 562 (713)
+.+...|++++...|.....|..++..+...|+.++|..++++++.. |.+...|...+.... .+ +. ++++.+
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e-~~---~~---~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD-EE---AV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT-CT---HH---HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc-hh---HH---HHHHHH
Confidence 34566777777777777777777777777777777777777777777 776666655444311 11 11 111111
Q ss_pred h-------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 005133 563 L-------------NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE-KFEFSEHHFRMA 628 (713)
Q Consensus 563 ~-------------~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g-~~~eA~~~l~ka 628 (713)
. .+....+|...+..+.+.++.+.|..+|+++ ...+.....|...|.+....+ +.+.|...|+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1 0111245666677777788899999999999 433345677777777777666 699999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 629 FQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 629 l~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
++..|+.+..+...+......|+.+.|...|+++ +.....|......-...|+.+.+...+++++.
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999998888888889999999999999997 34677888888888889999999999999886
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.96 E-value=5.2e-09 Score=86.90 Aligned_cols=82 Identities=26% Similarity=0.498 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005133 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 647 (713)
..++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44555555555555556666666666555555555555666666666666666666666666666655555555555555
Q ss_pred Hc
Q 005133 648 AL 649 (713)
Q Consensus 648 ~~ 649 (713)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.94 E-value=1.7e-08 Score=92.21 Aligned_cols=119 Identities=14% Similarity=0.109 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 005133 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA----LKRSGEAIEM 658 (713)
Q Consensus 583 ~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~----~g~~eeAl~~ 658 (713)
++++|+.+|+++.+..... +. +|.+|...+.+++|+++|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4555666666665554222 22 555555555556666666666554 455566666666665 5566666666
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCChhHHHhcc
Q 005133 659 MEKAILADKKNPLPMYQKANILLS----LEKFDEALEVLEELKEYAPRESGVYALMG 711 (713)
Q Consensus 659 l~kal~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~kal~l~P~~~~~~~~Lg 711 (713)
|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+...|+
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 6666554 355666666666666 56666666666666655 2344444444
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.90 E-value=2.3e-08 Score=91.27 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 005133 548 KDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR----QEKFEFSEH 623 (713)
Q Consensus 548 g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~----~g~~~eA~~ 623 (713)
+++++|+++|+++.+...... . +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 467788888888877754333 3 788887777888888888888776 577888888888887 778888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005133 624 HFRMAFQISPHSSVIMSYLGTAMHA----LKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (713)
Q Consensus 624 ~l~kal~~~p~~~~~~~~la~~~~~----~g~~eeAl~~l~kal~~~p~~~~~~~~la 677 (713)
+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.+...++
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 88888776 567888888888888 788888888888888763 444444443
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.88 E-value=3.9e-09 Score=89.64 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV-IMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE 684 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~-~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g 684 (713)
+..|.++...|++++|+..|+++++.+|.++. ++..+|.++..+|++++|+.+|+++++++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 34556666666666666666666666666666 66666666666666666666666666666666555533 4
Q ss_pred CHHHHHHHHHHHHHHCCCC
Q 005133 685 KFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 685 ~~~eA~~~~~kal~l~P~~ 703 (713)
.+.+|+..|+++...+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4555666666666555544
No 203
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=98.87 E-value=2.1e-08 Score=90.88 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=114.4
Q ss_pred ChhHHHHHHHHHHhhccchhhHHHHHhhhhcCCCchhHHHHHHHHhhcCCHHHHHHHHhcCCCcchhHHHHHHHhhcCCh
Q 005133 1 MEGILTDCVQNSLRYFMYRNAIFLCERLCAEFPSEVNLQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLL 80 (713)
Q Consensus 1 ~~~~l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~~~llA~~~~~~~~~~~A~~~l~~~~~~~~~~l~A~~~~~l~~~ 80 (713)
|.+.+..-|-.|+..-+|++|+||+.-|++-.| +-..|+.-.+|.+|+|.||.-+|.+....-..|--+.|+.++++|
T Consensus 1 m~~~~~~kI~Ks~kY~dYdt~~fLsa~L~~~~~--eY~lL~~I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~LCy~klKdY 78 (242)
T 3kae_A 1 MDSKLIGKICKSIRYRDYETAIFLAACLLPCKP--EYRMLMSIVLYLNGEYTRALFHLHKLNTCTSKYYESLCYKKKKDY 78 (242)
T ss_dssp --CTHHHHHHHHHHTTCHHHHHHHHHHHC------CTHHHHHHHHHHTTCHHHHHHHHHTCCBHHHHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHHHhhcccccHHHHHHHHHccCCh--HHHhhhhhhhhhcchHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 667788889999999999999999999887666 777889999999999999999999998888889999999999999
Q ss_pred hHHHHhhCCC-----C----------CCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcchHHHHHHHh
Q 005133 81 SEAEAALSPV-----N----------EPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCM 143 (713)
Q Consensus 81 ~ea~~~L~~~-----~----------~~~~~~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~~~a~~~L~~ 143 (713)
..|+..|+.. + ..+-+-.|...-+.++|+++..+|++++|+.+|+.+...+| ++.+.|.|.-
T Consensus 79 kkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~-lf~~vEnliy 155 (242)
T 3kae_A 79 KKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF-LFSPVENLLL 155 (242)
T ss_dssp HHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc-ccchHHHHHh
Confidence 9998877532 1 12223345567899999999999999999999999999986 6777776543
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.82 E-value=6.9e-09 Score=88.11 Aligned_cols=90 Identities=14% Similarity=0.305 Sum_probs=58.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005133 572 TLCGHEYVALEDFENGIRSYQSALRVDARHYN-SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (713)
Q Consensus 572 ~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~-~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 650 (713)
+.+|.++...|++++|+..|+++++.+|++.. +++.+|.+|...|++++|+..|+++++++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 34566666667777777777777777776666 77777777777777777777777777777766665532 4
Q ss_pred ChHHHHHHHHHHHHhCCCC
Q 005133 651 RSGEAIEMMEKAILADKKN 669 (713)
Q Consensus 651 ~~eeAl~~l~kal~~~p~~ 669 (713)
.+.+|+..|++++..+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 5566666666666555543
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.82 E-value=1.5e-08 Score=86.74 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005133 598 DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (713)
Q Consensus 598 ~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~ 666 (713)
+|+++.+++.+|.+|...|++++|+.+|+++++.+|+++.++..+|.+|..+|++++|+..|++++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 355555555555555555555555555555555555555555555555555555555555555555543
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.81 E-value=9.9e-09 Score=87.94 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=68.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChh
Q 005133 631 ISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (713)
Q Consensus 631 ~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~~~~ 705 (713)
.+|+++.+++.+|.+|...|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 468999999999999999999999999999999999999999999999999999999999999999998775443
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.80 E-value=1e-07 Score=100.35 Aligned_cols=156 Identities=11% Similarity=0.033 Sum_probs=81.9
Q ss_pred HHHHHhCCCCHHHHH--HHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 005133 524 QELITTDRLAPQSWC--AMGNCYSLQK---DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD 598 (713)
Q Consensus 524 ~kal~~~p~~~~~~~--~la~~~~~~g---~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~ 598 (713)
+++....|.++.+|- ..|..+...+ ...+|+.+|+++++++|+++.+|..++.+|.....+ .
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~ 250 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------H 250 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------S
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------C
Confidence 456666777766553 4456665544 347888889999999999888888888777621110 0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005133 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (713)
Q Consensus 599 p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~ 678 (713)
+....... ....|+... .++...|.++.++..++.++...|++++|+..+++++.++| +..+|..+|.
T Consensus 251 ~~~~~~~~----------~l~~a~~a~-~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~ 318 (372)
T 3ly7_A 251 PLDEKQLA----------ALNTEIDNI-VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGK 318 (372)
T ss_dssp CCCHHHHH----------HHHHHHHHH-HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred CCchhhHH----------HHHHHHHHH-HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 11100000 001111110 12233455555555555555555555555555555555554 2444445555
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCh
Q 005133 679 ILLSLEKFDEALEVLEELKEYAPRES 704 (713)
Q Consensus 679 ~~~~~g~~~eA~~~~~kal~l~P~~~ 704 (713)
++...|++++|++.|++++.++|..+
T Consensus 319 ~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 319 VYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 55555555555555555555555443
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.80 E-value=1.3e-08 Score=113.01 Aligned_cols=127 Identities=9% Similarity=-0.009 Sum_probs=77.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---
Q 005133 538 CAMGNCYSLQKDHETALKNFQRAVQL-----NPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRV-----DARH--- 601 (713)
Q Consensus 538 ~~la~~~~~~g~~~~Al~~~~kal~~-----~p~~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~-----~p~~--- 601 (713)
...+..+..+|+|++|+..+++++++ .+++ ...+..+|.+|..+|+|++|+.++++++++ .|++
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34445566677777777777777664 2333 345666677777777777777777776654 2333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005133 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI-----SPHSSV---IMSYLGTAMHALKRSGEAIEMMEKAIL 664 (713)
Q Consensus 602 ~~~~~~lg~~y~~~g~~~eA~~~l~kal~~-----~p~~~~---~~~~la~~~~~~g~~eeAl~~l~kal~ 664 (713)
...+++||.+|..+|++++|+.+|++|+++ .|+++. +...++.++..++.+++|...|.++.+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666677777777777777777766654 344443 344566666666666666666666544
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.79 E-value=2.5e-07 Score=97.32 Aligned_cols=148 Identities=10% Similarity=0.044 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHh---hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005133 465 TGWVLSQVGKAYFEV---VDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMG 541 (713)
Q Consensus 465 ~~~~~~~lg~~~~~~---g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 541 (713)
.++-++..|..++.. .++.+|+.+|+++++++|++..++..++.++..... ..+.......
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~-------------~~~~~~~~~~--- 258 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHS-------------QHPLDEKQLA--- 258 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-------------HSCCCHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc-------------cCCCchhhHH---
Confidence 445566777777765 456899999999999999999999888877762110 0011110000
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005133 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS 621 (713)
Q Consensus 542 ~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA 621 (713)
....|++. ..++..+|.++.++..++..+...|++++|+..+++++.++|. ..+|..+|.++...|++++|
T Consensus 259 -------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA 329 (372)
T 3ly7_A 259 -------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREA 329 (372)
T ss_dssp -------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred -------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 00122221 1223456667777777777776677777777777777777753 56666777777777777777
Q ss_pred HHHHHHHHHhCCCCHH
Q 005133 622 EHHFRMAFQISPHSSV 637 (713)
Q Consensus 622 ~~~l~kal~~~p~~~~ 637 (713)
++.|++|+.++|....
T Consensus 330 ~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 330 ADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHhcCCCcCh
Confidence 7777777777776543
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.78 E-value=2.2e-07 Score=93.85 Aligned_cols=107 Identities=14% Similarity=0.079 Sum_probs=84.8
Q ss_pred HhCCCCHHHHHHHHHHHHH---c--c------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHH
Q 005133 562 QLNPRFAYGHTLCGHEYVA---L--E------DFENGIRSYQSALRVDAR--HYNSWYGLGMVYLRQ-----EKFEFSEH 623 (713)
Q Consensus 562 ~~~p~~~~a~~~lg~~~~~---~--g------~~eeAl~~~~~al~~~p~--~~~~~~~lg~~y~~~-----g~~~eA~~ 623 (713)
+.+|+++.+++..|.+... . | ...+|...++++++++|+ +..+|..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3467777777766665432 1 2 357888888999999998 566888899888884 89999999
Q ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC
Q 005133 624 HFRMAFQISPHS-SVIMSYLGTAMHAL-KRSGEAIEMMEKAILADKK 668 (713)
Q Consensus 624 ~l~kal~~~p~~-~~~~~~la~~~~~~-g~~eeAl~~l~kal~~~p~ 668 (713)
+|++|++++|+. ...++.+|..+... |++++|..++++++...|.
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999999999875 88888888888774 8899999999999888765
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.78 E-value=2.5e-08 Score=110.73 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=78.0
Q ss_pred HHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHH
Q 005133 578 YVALEDFENGIRSYQSALRV-----DARH---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI-----SPHSSV---IMSY 641 (713)
Q Consensus 578 ~~~~g~~eeAl~~~~~al~~-----~p~~---~~~~~~lg~~y~~~g~~~eA~~~l~kal~~-----~p~~~~---~~~~ 641 (713)
+..+|+|++|+..+++++++ .|++ ..++.+||.+|..+|+|++|+.++++++++ .|+++. .+.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777777664 2333 345666777777777777777777777654 344433 5666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh-----CCCChhH---HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 642 LGTAMHALKRSGEAIEMMEKAILA-----DKKNPLP---MYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 642 la~~~~~~g~~eeAl~~l~kal~~-----~p~~~~~---~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
||.+|..+|++++|+.+|++|+++ .|+++.+ ...++.++..+|.+++|...|.++.+..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777654 4555433 3566666777777777777777666533
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.68 E-value=5.1e-07 Score=91.21 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=93.5
Q ss_pred HhCCCCHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CChHHHHH
Q 005133 596 RVDARHYNSWYGLGMVYLR---Q--E------KFEFSEHHFRMAFQISPH--SSVIMSYLGTAMHAL-----KRSGEAIE 657 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~y~~---~--g------~~~eA~~~l~kal~~~p~--~~~~~~~la~~~~~~-----g~~eeAl~ 657 (713)
+.+|+++++++..|.+... . | ...+|...++++++++|+ +..+|..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4578888887777766543 1 2 357899999999999999 667999999999996 99999999
Q ss_pred HHHHHHHhCCCC-hhHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Q 005133 658 MMEKAILADKKN-PLPMYQKANILLS-LEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 658 ~l~kal~~~p~~-~~~~~~la~~~~~-~g~~~eA~~~~~kal~l~P~~ 703 (713)
+|+++++++|+. ..+++.+|..+.. .|++++|..++++++...|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 9999999999988 599999999999999988763
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=1.1e-06 Score=80.47 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHH
Q 005133 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE---KFEFSEHHFRMAFQIS-P-HSSVIMSYLGTAMHALKRSGEAIE 657 (713)
Q Consensus 583 ~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g---~~~eA~~~l~kal~~~-p-~~~~~~~~la~~~~~~g~~eeAl~ 657 (713)
....+.+.|.+.+..++.+.++.+.+|+++.+.+ +.++++.+++.+++.+ | ...+.++++|..++++|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4556677777777777777888888888888777 5667888888888776 5 456777888888888888888888
Q ss_pred HHHHHHHhCCCChhHHHHHHH
Q 005133 658 MMEKAILADKKNPLPMYQKAN 678 (713)
Q Consensus 658 ~l~kal~~~p~~~~~~~~la~ 678 (713)
+++++++++|++..+...+-.
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHH
Confidence 888888888877776654443
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=1.4e-06 Score=79.68 Aligned_cols=93 Identities=15% Similarity=0.071 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 005133 550 HETALKNFQRAVQLNPRFAYGHTLCGHEYVALE---DFENGIRSYQSALRVD-A-RHYNSWYGLGMVYLRQEKFEFSEHH 624 (713)
Q Consensus 550 ~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g---~~eeAl~~~~~al~~~-p-~~~~~~~~lg~~y~~~g~~~eA~~~ 624 (713)
...+.+.|.+.+..++.+..+.+.+|+++...+ +.++++.+++.+++.+ | +..++++++|..|++.|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 445566666666666666677777777776666 5556777777776666 5 3466667777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHHH
Q 005133 625 FRMAFQISPHSSVIMSYL 642 (713)
Q Consensus 625 l~kal~~~p~~~~~~~~l 642 (713)
+++++++.|++..+....
T Consensus 94 ~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 777777777666555443
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.41 E-value=1.3e-06 Score=73.61 Aligned_cols=71 Identities=14% Similarity=0.075 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005133 598 DARHYNSWYGLGMVYLRQEK---FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668 (713)
Q Consensus 598 ~p~~~~~~~~lg~~y~~~g~---~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~ 668 (713)
+|+++..+..+|.+++..++ .++|..+++++++.+|+++.++..+|..++..|+|++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46667777777777665544 567777777777777777777777777777777777777777777776665
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.39 E-value=2.1e-06 Score=72.46 Aligned_cols=71 Identities=8% Similarity=-0.025 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005133 564 NPRFAYGHTLCGHEYVALED---FENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (713)
Q Consensus 564 ~p~~~~a~~~lg~~~~~~g~---~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~ 634 (713)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45566666666666654444 466666666666666666666666666666666666666666666666655
No 217
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.33 E-value=5e-05 Score=84.61 Aligned_cols=159 Identities=9% Similarity=0.035 Sum_probs=79.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHhCC-CCHHHHHHH
Q 005133 540 MGNCYSLQKDHETALKNFQRAVQLN-PRFAYGHTLCGHEYVALE---------DFENGIRSYQSALRVDA-RHYNSWYGL 608 (713)
Q Consensus 540 la~~~~~~g~~~~Al~~~~kal~~~-p~~~~a~~~lg~~~~~~g---------~~eeAl~~~~~al~~~p-~~~~~~~~l 608 (713)
+-..+.+.|+.++|+++|+++.+.. .-+...|..+..++...+ ..++|..+|+++....- -+..+|..+
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3344455555555555555554431 113334444443333222 24555555555544321 134555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCH
Q 005133 609 GMVYLRQEKFEFSEHHFRMAFQIS-PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK-KNPLPMYQKANILLSLEKF 686 (713)
Q Consensus 609 g~~y~~~g~~~eA~~~l~kal~~~-p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p-~~~~~~~~la~~~~~~g~~ 686 (713)
...|.+.|++++|.++|++..+.. ..+...|..+-..|.+.|+.++|.++|++..+..- -+...|..+..+|.+.|+.
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 555555566666655555554432 22344555555555555666666655555554321 1444555555555556666
Q ss_pred HHHHHHHHHHHH
Q 005133 687 DEALEVLEELKE 698 (713)
Q Consensus 687 ~eA~~~~~kal~ 698 (713)
++|.++|+++.+
T Consensus 192 d~A~~ll~~Mr~ 203 (501)
T 4g26_A 192 DKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655555544
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.28 E-value=4.1e-06 Score=72.14 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005133 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS-------PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (713)
Q Consensus 601 ~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~-------p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~ 673 (713)
.+.-.+.+|..++..|+|..|+.+|++|++.. +....++..+|.+++++|++++|+.++++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35567888999999999999999999988763 23467888899999999999999999999999999888887
Q ss_pred HHHH
Q 005133 674 YQKA 677 (713)
Q Consensus 674 ~~la 677 (713)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7766
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.25 E-value=7.8e-06 Score=70.34 Aligned_cols=77 Identities=13% Similarity=0.000 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005133 567 FAYGHTLCGHEYVALEDFENGIRSYQSALRVD-------ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIM 639 (713)
Q Consensus 567 ~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~-------p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~ 639 (713)
.+.-.+.+|..++..++|..|+..|++|++.. +....++..+|.+|.++|++++|+.++++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34567788999999999999999999988863 34577888999999999999999999999999999998887
Q ss_pred HHHH
Q 005133 640 SYLG 643 (713)
Q Consensus 640 ~~la 643 (713)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7776
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.23 E-value=3.2e-06 Score=92.23 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=48.4
Q ss_pred hcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHH
Q 005133 546 LQKDHETALKNFQRAVQL-----NPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRV-----DARH---YNSWYGLG 609 (713)
Q Consensus 546 ~~g~~~~Al~~~~kal~~-----~p~~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~-----~p~~---~~~~~~lg 609 (713)
..|+|++|+..+++++++ .|++ ...+..+|.+|..+|+|++|+.++++++++ .|++ ...+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346666676666666654 2333 234555666666666666666666666553 2333 23455566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 005133 610 MVYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 610 ~~y~~~g~~~eA~~~l~kal~~ 631 (713)
.+|..+|++++|+.+|++|+++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 6666666666666666665543
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.20 E-value=4.6e-06 Score=91.00 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=44.9
Q ss_pred cCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHH
Q 005133 582 EDFENGIRSYQSALRV-----DARHY---NSWYGLGMVYLRQEKFEFSEHHFRMAFQI-----SPHSSV---IMSYLGTA 645 (713)
Q Consensus 582 g~~eeAl~~~~~al~~-----~p~~~---~~~~~lg~~y~~~g~~~eA~~~l~kal~~-----~p~~~~---~~~~la~~ 645 (713)
|+|++|+..|++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++++ .|+++. .+.+||.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555555553 23332 34555566666666666666666655543 233332 45555666
Q ss_pred HHHcCChHHHHHHHHHHHHh
Q 005133 646 MHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 646 ~~~~g~~eeAl~~l~kal~~ 665 (713)
|..+|++++|+.+|++|+++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHH
Confidence 66666666666666655543
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.16 E-value=0.00028 Score=78.57 Aligned_cols=158 Identities=11% Similarity=-0.003 Sum_probs=102.2
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Q 005133 474 KAYFEVVDYLEAERAFTLARRASP-YSLEGMDIYSTVLYHL---------KEDMKLSYLAQELITTD-RLAPQSWCAMGN 542 (713)
Q Consensus 474 ~~~~~~g~~~eA~~~~~kal~~~p-~~~~a~~~la~~l~~~---------g~~~~A~~~~~kal~~~-p~~~~~~~~la~ 542 (713)
..+.+.|++++|+++|+++.+..- -+...|..+..++... +..++|..++++..... .-+..+|..+..
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~ 113 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR 113 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 444444555555555555544321 1223333333333222 22455666666655432 225667788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Q 005133 543 CYSLQKDHETALKNFQRAVQLN-PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA-RHYNSWYGLGMVYLRQEKFEF 620 (713)
Q Consensus 543 ~~~~~g~~~~Al~~~~kal~~~-p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p-~~~~~~~~lg~~y~~~g~~~e 620 (713)
.|.+.|++++|.++|++..+.. .-+...|..+...|.+.|+.++|.++|+++.+..- -+...|..+..+|.+.|++++
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK 193 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence 8888888888888888877652 23567788888888888888888888888876532 246778888888888888888
Q ss_pred HHHHHHHHHHh
Q 005133 621 SEHHFRMAFQI 631 (713)
Q Consensus 621 A~~~l~kal~~ 631 (713)
|.++|++..+.
T Consensus 194 A~~ll~~Mr~~ 204 (501)
T 4g26_A 194 VYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887654
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.16 E-value=5.9e-06 Score=90.24 Aligned_cols=94 Identities=16% Similarity=0.103 Sum_probs=64.4
Q ss_pred HHhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCH---HHHHH
Q 005133 544 YSLQKDHETALKNFQRAVQL-----NPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRV-----DARHY---NSWYG 607 (713)
Q Consensus 544 ~~~~g~~~~Al~~~~kal~~-----~p~~---~~a~~~lg~~~~~~g~~eeAl~~~~~al~~-----~p~~~---~~~~~ 607 (713)
+..+|+|++|+..+++++++ .|++ ...+..+|.+|..+|+|++|+.++++++.+ .|+++ ..+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44567888888888888765 2333 345677777777788888888888777764 33433 45777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Q 005133 608 LGMVYLRQEKFEFSEHHFRMAFQI-----SPHSSV 637 (713)
Q Consensus 608 lg~~y~~~g~~~eA~~~l~kal~~-----~p~~~~ 637 (713)
||.+|..+|++++|+.+|++|+++ .|+++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 777777777777777777777764 455554
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.13 E-value=6e-06 Score=90.17 Aligned_cols=104 Identities=9% Similarity=-0.082 Sum_probs=84.6
Q ss_pred HHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHH
Q 005133 578 YVALEDFENGIRSYQSALRV-----DARH---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI-----SPHSSV---IMSY 641 (713)
Q Consensus 578 ~~~~g~~eeAl~~~~~al~~-----~p~~---~~~~~~lg~~y~~~g~~~eA~~~l~kal~~-----~p~~~~---~~~~ 641 (713)
+..+|++++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|+++. .+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 55788999999999999975 3444 457889999999999999999999999976 455554 6889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh-----CCCChhHH---HHHHHHHH
Q 005133 642 LGTAMHALKRSGEAIEMMEKAILA-----DKKNPLPM---YQKANILL 681 (713)
Q Consensus 642 la~~~~~~g~~eeAl~~l~kal~~-----~p~~~~~~---~~la~~~~ 681 (713)
+|.+|..+|++++|+.+|++|+++ .|+++.+. ..|+.+..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999975 67776554 44555443
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.79 E-value=0.0001 Score=64.99 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=63.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHH
Q 005133 581 LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEF---SEHHFRMAFQIS-P-HSSVIMSYLGTAMHALKRSGEA 655 (713)
Q Consensus 581 ~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~e---A~~~l~kal~~~-p-~~~~~~~~la~~~~~~g~~eeA 655 (713)
......+...|.+.+..++....+.+.+|+++.+..+... ++.+++..++.. | ..-+.++.+|..++++|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445556666666666666667777777777777665544 777777766654 3 3345666777777777777777
Q ss_pred HHHHHHHHHhCCCChhHHHHHHH
Q 005133 656 IEMMEKAILADKKNPLPMYQKAN 678 (713)
Q Consensus 656 l~~l~kal~~~p~~~~~~~~la~ 678 (713)
+.+++.+++..|++..+......
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Confidence 77777777777777666544433
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.76 E-value=0.00023 Score=62.73 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHhC-C-CChhHHHHHHHHHHHcCCHHHHHHHH
Q 005133 619 EFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGE---AIEMMEKAILAD-K-KNPLPMYQKANILLSLEKFDEALEVL 693 (713)
Q Consensus 619 ~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ee---Al~~l~kal~~~-p-~~~~~~~~la~~~~~~g~~~eA~~~~ 693 (713)
..+.+.|.+.+..++....+.+.+||++.+..+... ++.+++..+..+ | ..-+.++.+|..++++|+|++|+.++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344444444444444555555555555555544333 555555544443 2 23344555555555555555555555
Q ss_pred HHHHHHCCCChhHH
Q 005133 694 EELKEYAPRESGVY 707 (713)
Q Consensus 694 ~kal~l~P~~~~~~ 707 (713)
+.+++..|++..+.
T Consensus 98 ~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 98 RGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHCTTCHHHH
T ss_pred HHHHHhCCCCHHHH
Confidence 55555555555444
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.64 E-value=0.00067 Score=61.04 Aligned_cols=106 Identities=8% Similarity=-0.062 Sum_probs=58.2
Q ss_pred hCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 563 LNPRFAYGHTLCGHEYVALEDF------ENGIRSYQSALRVDARH--------YNSWYGLGMVYLRQEKFEFSEHHFRMA 628 (713)
Q Consensus 563 ~~p~~~~a~~~lg~~~~~~g~~------eeAl~~~~~al~~~p~~--------~~~~~~lg~~y~~~g~~~eA~~~l~ka 628 (713)
+.|.+++.|..........|+. ++-++.|++|+..-|-. ...|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3556666666666666555665 56666666666554431 2233334432 3345666666666666
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005133 629 FQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669 (713)
Q Consensus 629 l~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~ 669 (713)
+......+.+|...|....++|+...|.+.+.+++.+.|..
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 55555555555556666666666666666666666655543
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.56 E-value=0.001 Score=59.83 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=30.2
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005133 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV 637 (713)
Q Consensus 580 ~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~ 637 (713)
..++.++|.+.|+.++.+....+.+|...|..-.++|+...|.+.+.+++.+.|....
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 3355555555555555544444555555555555555555555555555555554443
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.07 E-value=0.003 Score=58.09 Aligned_cols=115 Identities=12% Similarity=0.073 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHH
Q 005133 570 GHTLCGHEYVALEDFENGIRSYQSALRVD---AR------HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP---HSSV 637 (713)
Q Consensus 570 a~~~lg~~~~~~g~~eeAl~~~~~al~~~---p~------~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p---~~~~ 637 (713)
+++.-...+...|.|+.|+.....++.+. |+ .+.++..+|.+++..++|..|...|+++++... ....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555666777888888888877766553 22 134677788888888888888888888776522 1211
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005133 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEEL 696 (713)
Q Consensus 638 ~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ka 696 (713)
....++. ...+.. ... .+.+.++.+.++.||.++|++++|+..++.+
T Consensus 102 ~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1101100 000000 001 1235578899999999999999999988764
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.95 E-value=0.011 Score=52.73 Aligned_cols=78 Identities=9% Similarity=0.061 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 005133 600 RHYNSWYGLGMVYLRQEK---FEFSEHHFRMAFQISPH-SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQ 675 (713)
Q Consensus 600 ~~~~~~~~lg~~y~~~g~---~~eA~~~l~kal~~~p~-~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~ 675 (713)
-...+.+.+|+++.+..+ ..+++.+++..++..|. .-+.++.+|..++++|+|++|+.+.+.+++..|++.++...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 346666777777766653 34566677776666663 34466667777777777777777777777777766665544
Q ss_pred HH
Q 005133 676 KA 677 (713)
Q Consensus 676 la 677 (713)
..
T Consensus 117 k~ 118 (144)
T 1y8m_A 117 KS 118 (144)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.93 E-value=0.013 Score=52.42 Aligned_cols=73 Identities=7% Similarity=0.078 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005133 567 FAYGHTLCGHEYVALED---FENGIRSYQSALRVDAR-HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIM 639 (713)
Q Consensus 567 ~~~a~~~lg~~~~~~g~---~eeAl~~~~~al~~~p~-~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~ 639 (713)
...+.+.+|+++..... ..+++.+++..++..|. .-+.++.+|..+++.|+|++|.++.+..|+..|++..+.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455555555554433 23455555555555442 344555555555555555555555555555555554443
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.81 E-value=0.0059 Score=53.86 Aligned_cols=79 Identities=9% Similarity=0.066 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005133 601 HYNSWYGLGMVYLRQEK---FEFSEHHFRMAFQISPH-SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676 (713)
Q Consensus 601 ~~~~~~~lg~~y~~~g~---~~eA~~~l~kal~~~p~-~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~l 676 (713)
.+.+.+.+|+++.+..+ ..+++.+++..++..|. .-+.++.+|..++++|+|++|+++.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 46777777777777654 34677777777777663 355777777777777788888777777777777777766554
Q ss_pred HHH
Q 005133 677 ANI 679 (713)
Q Consensus 677 a~~ 679 (713)
..+
T Consensus 119 ~~I 121 (134)
T 3o48_A 119 SMV 121 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.81 E-value=0.0064 Score=53.66 Aligned_cols=77 Identities=6% Similarity=0.071 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005133 567 FAYGHTLCGHEYVALED---FENGIRSYQSALRVDAR-HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYL 642 (713)
Q Consensus 567 ~~~a~~~lg~~~~~~g~---~eeAl~~~~~al~~~p~-~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 642 (713)
.+.+.+.+|+++....+ ..+++.+++..++..|. .-+.++.+|..+++.|+|++|+++.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 35566666666666543 34566666666666663 356666677777777777777777777777777666655443
Q ss_pred H
Q 005133 643 G 643 (713)
Q Consensus 643 a 643 (713)
.
T Consensus 119 ~ 119 (134)
T 3o48_A 119 S 119 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.41 E-value=0.17 Score=58.88 Aligned_cols=97 Identities=14% Similarity=0.116 Sum_probs=49.0
Q ss_pred HccCCHHHHHH-HHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 005133 443 SCMYRCKDALD-VYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSY 521 (713)
Q Consensus 443 ~~~g~~~eAi~-~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~ 521 (713)
+..+++++|.. ++..+. + ...+..+...+...|.+++|++..+. .... .......|++++|.+
T Consensus 610 ~~~~~~~~a~~~~l~~i~----~-~~~~~~~~~~l~~~~~~~~a~~~~~~--------~~~~---f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE----G-KDSLTKIARFLEGQEYYEEALNISPD--------QDQK---FELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC----C-HHHHHHHHHHHHHTTCHHHHHHHCCC--------HHHH---HHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC----c-hHHHHHHHHHHHhCCChHHheecCCC--------cchh---eehhhhcCCHHHHHH
Confidence 45677777766 442221 0 11224455555566666666655421 1111 122344556665555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005133 522 LAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRA 560 (713)
Q Consensus 522 ~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~ka 560 (713)
+++. -+++..|..+|..+...++++.|.++|.++
T Consensus 674 ~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 674 LLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4322 234556666666666666666666666553
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.33 E-value=0.36 Score=54.56 Aligned_cols=234 Identities=12% Similarity=-0.040 Sum_probs=126.1
Q ss_pred ccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 005133 444 CMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLA 523 (713)
Q Consensus 444 ~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~ 523 (713)
..+++..-+.++.. .|.+...-+..+.+....|+-.+|....+++.......+.....+...+...|......
T Consensus 84 ~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~--- 156 (618)
T 1qsa_A 84 RREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLA--- 156 (618)
T ss_dssp HTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHH---
T ss_pred hCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHH---
Confidence 46677777775554 26677777777777888888777777777766555444443333333333333221111
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------------HHHHhCCCCH-------------HHHHHHHHH
Q 005133 524 QELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQ-------------RAVQLNPRFA-------------YGHTLCGHE 577 (713)
Q Consensus 524 ~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~-------------kal~~~p~~~-------------~a~~~lg~~ 577 (713)
+.......+..|+...|..... .++..+|... .....++..
T Consensus 157 -------------~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (618)
T 1qsa_A 157 -------------YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFA 223 (618)
T ss_dssp -------------HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHH
Confidence 1111111111111111111110 0111122111 122333444
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 005133 578 YVALEDFENGIRSYQSALRVDARHYNS----WYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSG 653 (713)
Q Consensus 578 ~~~~g~~eeAl~~~~~al~~~p~~~~~----~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~e 653 (713)
.....+.+.|...+........-+... +..++.-+...+...++...+.++.....+ ......++....+.|+++
T Consensus 224 rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 224 SVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRR 302 (618)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCCCHH
Confidence 555567888888887765433322222 222333333344355677777776554433 333333444445678999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 654 EAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 654 eAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
.|..+|+++-..........+.+|.++..+|+.++|..+|+++..
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 998888765443334567788899999999999999999888875
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.25 E-value=0.086 Score=61.53 Aligned_cols=184 Identities=9% Similarity=-0.052 Sum_probs=127.4
Q ss_pred HHHHHhhcHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 005133 474 KAYFEVVDYLEAER-AFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHET 552 (713)
Q Consensus 474 ~~~~~~g~~~eA~~-~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~ 552 (713)
......+++++|.+ ++.. -+ +...+..++..+...|..++|....+ ++..- .......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456789999877 4411 01 01222556677778888888776542 22222 234567899999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005133 553 ALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL--------RVDARHYNSWYGLGMVYLRQEKFEFSEHH 624 (713)
Q Consensus 553 Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al--------~~~p~~~~~~~~lg~~y~~~g~~~eA~~~ 624 (713)
|.+..+. .++...|..+|..+...++++.|+.+|.++- .....+...+..++......|++..|...
T Consensus 671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~ 745 (814)
T 3mkq_A 671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNA 745 (814)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 9988653 3677899999999999999999999999862 22345667778889999999999999988
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHcCCHHHH
Q 005133 625 FRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQKANILLSLEKFDEA 689 (713)
Q Consensus 625 l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~---~~~~~~la~~~~~~g~~~eA 689 (713)
|.+. .+ +.....+|.+.+++++|+.+.++ ..|.. +.+....+.-+...|+.+.|
T Consensus 746 ~~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 746 YWIA-----GD---IQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHH-----TC---HHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHc-----CC---HHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 7653 12 23455678899999999987664 44433 25556667777788876544
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.97 E-value=0.12 Score=55.06 Aligned_cols=91 Identities=13% Similarity=0.020 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCh----hHH
Q 005133 607 GLGMVYLRQEKFEFSEHHFRMAFQISPH--S----SVIMSYLGTAMHALKRSGEAIEMMEKAILAD---KKNP----LPM 673 (713)
Q Consensus 607 ~lg~~y~~~g~~~eA~~~l~kal~~~p~--~----~~~~~~la~~~~~~g~~eeAl~~l~kal~~~---p~~~----~~~ 673 (713)
.+|..|+..|+|.+|.+.+.+.++.... + .+++.....+|...+++.++...|.++.... +.+| ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4555555555555555555544432111 1 1233444455555555555555555554321 1111 122
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHH
Q 005133 674 YQKANILL-SLEKFDEALEVLEELK 697 (713)
Q Consensus 674 ~~la~~~~-~~g~~~eA~~~~~kal 697 (713)
..-|.++. ..++|.+|..+|-++.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 33444455 4555555555555544
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.066 Score=61.67 Aligned_cols=116 Identities=12% Similarity=0.012 Sum_probs=87.1
Q ss_pred hhc-HHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHc-cCHHHHHHHHHHHHHh--------CCCC----------HHHH
Q 005133 479 VVD-YLEAERAFTLARRASPYSLEGMDIY-STVLYHL-KEDMKLSYLAQELITT--------DRLA----------PQSW 537 (713)
Q Consensus 479 ~g~-~~eA~~~~~kal~~~p~~~~a~~~l-a~~l~~~-g~~~~A~~~~~kal~~--------~p~~----------~~~~ 537 (713)
.++ ++.|+.+|++....+|.....+... ..++... .+.-+|+.++.+.++. .+.+ ...+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 344 6889999999999999764433221 1222222 3455677777776642 2222 2355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 005133 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (713)
Q Consensus 538 ~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~a 594 (713)
..-+..+...|+++-|+++.++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 566888889999999999999999999999999999999999999999999888765
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.051 Score=62.60 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=28.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 005133 641 YLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLE 694 (713)
Q Consensus 641 ~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 694 (713)
.-+..+...|+++-|+++.++|+...|..-..|+.|+.+|..+|+|+.|+-.+.
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 334444445555555555555555555555555555555555555555554433
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.86 E-value=0.48 Score=50.32 Aligned_cols=92 Identities=15% Similarity=-0.001 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCH----HHH
Q 005133 539 AMGNCYSLQKDHETALKNFQRAVQLNP--RF----AYGHTLCGHEYVALEDFENGIRSYQSALRVD---ARHY----NSW 605 (713)
Q Consensus 539 ~la~~~~~~g~~~~Al~~~~kal~~~p--~~----~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~---p~~~----~~~ 605 (713)
.+|.+|...|+|.+|++.+.+..+.-. ++ .+++.....+|...+++.++..++.++.... +.++ ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456666666666666666666554311 11 2344455555666666666666666654431 1112 223
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHH
Q 005133 606 YGLGMVYL-RQEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 606 ~~lg~~y~-~~g~~~eA~~~l~kal~ 630 (713)
..-|.++. ..++|..|..+|-++++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 34455555 56666666666666653
No 241
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.82 E-value=1.1 Score=41.00 Aligned_cols=75 Identities=23% Similarity=0.161 Sum_probs=40.5
Q ss_pred hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005133 479 VVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQ 558 (713)
Q Consensus 479 ~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~ 558 (713)
-.+|+.++-.-.-. .|..++....++.+++-.|++.++..++.. -+...+.+..+.||...++|..|+..++
T Consensus 15 Y~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le 86 (242)
T 3kae_A 15 YRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLE 86 (242)
T ss_dssp TTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35565554332222 233334555566666666666666655432 2334555566666667777777777776
Q ss_pred HHH
Q 005133 559 RAV 561 (713)
Q Consensus 559 kal 561 (713)
..+
T Consensus 87 ~il 89 (242)
T 3kae_A 87 SIL 89 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 666
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.75 Score=49.87 Aligned_cols=185 Identities=10% Similarity=-0.027 Sum_probs=122.1
Q ss_pred cCCHHHHHHHHHcCc------ccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----Hcc
Q 005133 445 MYRCKDALDVYLKLP------HKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY----HLK 514 (713)
Q Consensus 445 ~g~~~eAi~~l~~~~------~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~----~~g 514 (713)
.+++++|++.+..+. ...+....++..+..+++..++|+...+.+.-..........+...+..... ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 356777777664432 2344567788889999999999999888877665554444444333322211 111
Q ss_pred CHHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-C-CCC----HHHHHHHHHH
Q 005133 515 EDMKLSYLAQELITTD----RL-------APQSWCAMGNCYSLQKDHETALKNFQRAVQL-N-PRF----AYGHTLCGHE 577 (713)
Q Consensus 515 ~~~~A~~~~~kal~~~----p~-------~~~~~~~la~~~~~~g~~~~Al~~~~kal~~-~-p~~----~~a~~~lg~~ 577 (713)
..+. ......++.- .. .......++.+|...|++.+|...+.....- . ..+ ...+.....+
T Consensus 109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 1111 1112222211 11 2345678899999999999999999987643 1 111 4567788889
Q ss_pred HHHccCHHHHHHHHHHHHH---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005133 578 YVALEDFENGIRSYQSALR---VDARHY----NSWYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 578 ~~~~g~~eeAl~~~~~al~---~~p~~~----~~~~~lg~~y~~~g~~~eA~~~l~kal~~ 631 (713)
|...+++.+|...++++.. ..+..+ ..+...|.++...++|.+|-.+|..++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999998743 233333 45677899999999999999999988764
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.00 E-value=0.3 Score=51.99 Aligned_cols=112 Identities=17% Similarity=0.077 Sum_probs=71.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 005133 574 CGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS-EHHFRMAFQISPHSSVIMSYLGTAMHALKRS 652 (713)
Q Consensus 574 lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA-~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 652 (713)
.|......|+.+.|...+++++.+....+-. .+. ...|-.+ ...+++.. ..+...++..+...|++
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~ 187 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRA 187 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCH
Confidence 3444445689999999999999875332110 000 0111111 11121111 12345567777788888
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005133 653 GEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 653 eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 698 (713)
++|+..+++++..+|-+..++..+..++...|+..+|+..|+++.+
T Consensus 188 ~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888877654
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.39 Score=44.74 Aligned_cols=99 Identities=16% Similarity=0.029 Sum_probs=65.5
Q ss_pred HccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 005133 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYL 522 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~~ 522 (713)
+..|+++.|.++.+++ ++...|..+|......|+++-|.++|.++-. +..+..+|...|+.+....+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 5789999999988765 4677899999999999999999999988732 23344445556666555554
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005133 523 AQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQR 559 (713)
Q Consensus 523 ~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~k 559 (713)
.+.+..... +.....+++..|+++++++.|.+
T Consensus 83 a~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444433222 22233445566666666666654
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.82 E-value=2.3 Score=43.45 Aligned_cols=125 Identities=8% Similarity=-0.076 Sum_probs=61.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCccc------CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CCCCHHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHK------HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA-----SPYSLEG 502 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~-----~p~~~~a 502 (713)
+.+.+-...+..|+|=||.+.++.+..+ .....++++.-+..+.+.|++..|.++..-.++. .+-+.+.
T Consensus 15 r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~ 94 (312)
T 2wpv_A 15 KTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDIS 94 (312)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3344444445666777777666654211 1122234445555566666666666654333332 2233444
Q ss_pred HHHHHHHHHHccCHH-HHHHHHHHHHH-------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005133 503 MDIYSTVLYHLKEDM-KLSYLAQELIT-------TDRLAPQSWCAMGNCYSLQKDHETALKNFQ 558 (713)
Q Consensus 503 ~~~la~~l~~~g~~~-~A~~~~~kal~-------~~p~~~~~~~~la~~~~~~g~~~~Al~~~~ 558 (713)
...+..++......+ .-..+..+++. ..-.+++.+..+|..|+..+++.+|..+|-
T Consensus 95 ~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 95 VARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 444554444432111 11222223321 122466777777777777777777776664
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=3.2 Score=44.83 Aligned_cols=185 Identities=9% Similarity=-0.088 Sum_probs=120.8
Q ss_pred hhcHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HH-hcC
Q 005133 479 VVDYLEAERAFTLARRAS------PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNC---YS-LQK 548 (713)
Q Consensus 479 ~g~~~eA~~~~~kal~~~------p~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~---~~-~~g 548 (713)
.+++++|++.+....+.. +....+...+..++...++++.....+.-+.........+-..+... |. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 377888888876555432 33466778888899999999988777655544433333322222211 11 112
Q ss_pred CHHHHHHHHHHHHHh----CCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C-CC----CHHHHHHHHHH
Q 005133 549 DHETALKNFQRAVQL----NPR-------FAYGHTLCGHEYVALEDFENGIRSYQSALRV-D-AR----HYNSWYGLGMV 611 (713)
Q Consensus 549 ~~~~Al~~~~kal~~----~p~-------~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~-~-p~----~~~~~~~lg~~ 611 (713)
..+. ......+.. ... .......|+.+|...|++.+|..++.....- . .. -.+.+.....+
T Consensus 109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2111 111122221 111 2345577999999999999999999987642 1 11 24678888999
Q ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 612 YLRQEKFEFSEHHFRMAFQ---ISPHSS----VIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 612 y~~~g~~~eA~~~l~kal~---~~p~~~----~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
|...++|.+|...+.++.. ..+..+ ..+...|.++...++|.+|..+|..+...
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999998742 233333 35677899999999999999999888753
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.43 E-value=5.2 Score=41.12 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005133 532 LAPQSWCAMGNCYSLQKDHETALKNF 557 (713)
Q Consensus 532 ~~~~~~~~la~~~~~~g~~~~Al~~~ 557 (713)
.+++.+..+|..|+..+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 46777777777777777777777666
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.88 E-value=0.55 Score=55.41 Aligned_cols=99 Identities=7% Similarity=-0.068 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 005133 568 AYGHTLCGHEYVALEDFENGIRSYQSALRV----DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS-PHSSVIMSYL 642 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g~~eeAl~~~~~al~~----~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~-p~~~~~~~~l 642 (713)
...+..+...|.+.|+.++|..+|.+..+. ..-+...|+.+...|.+.|++++|.++|++..+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 456888999999999999999999775432 23358899999999999999999999999987753 3467788888
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHHhC
Q 005133 643 GTAMHALKRS-GEAIEMMEKAILAD 666 (713)
Q Consensus 643 a~~~~~~g~~-eeAl~~l~kal~~~ 666 (713)
-.++.+.|+. ++|.++|+++.+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8899999985 78899999998864
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.86 E-value=0.66 Score=49.30 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=25.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005133 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRM 627 (713)
Q Consensus 575 g~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~k 627 (713)
+..+...|++++|+..++.++..+|-+..++..+..+|...|+..+|+..|++
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444544444444444
No 250
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.54 Score=51.30 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005133 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (713)
Q Consensus 568 ~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~-------~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~ 635 (713)
+..+..+-..|...+.+++|..+..++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3456667777777888888888877763 3432 3456677888888888888888888888776654
No 251
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.79 E-value=1.4 Score=40.98 Aligned_cols=127 Identities=13% Similarity=0.012 Sum_probs=82.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005133 543 CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSE 622 (713)
Q Consensus 543 ~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~ 622 (713)
.....|+++.|.+..+.. ++...|..+|......|+++-|..+|.++- + +-.+..+|.-.|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHHHHhCCHHHHH
Confidence 345788999998887764 567889999999999999999999998862 2 334555666778877766
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 005133 623 HHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEE 695 (713)
Q Consensus 623 ~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~k 695 (713)
+.-+.+..... +.....+++.+|++++++++|.+.-. .+.+ +.+....|-.+.|.++.+.
T Consensus 81 kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA----~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 81 KMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEGGS----LPLA----YAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHTTC----HHHH----HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHCCC----hHHH----HHHHHHcCcHHHHHHHHHH
Confidence 66655544332 12334556778999999988865321 1222 2222234556666665544
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.69 E-value=5.3 Score=44.96 Aligned_cols=268 Identities=8% Similarity=-0.082 Sum_probs=144.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---
Q 005133 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVL--- 510 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l--- 510 (713)
..|..+...+..|++..+..+...+ ..+|-.+.+-+ ..+....+.. .-..+...+...|+.+..-......+
T Consensus 8 ~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL~~yl~y--~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 8 SRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEY--RQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHH--HHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhh-cCCCcHHHHHH--HHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHHHH
Confidence 4566677778889998888776654 34554333222 1122222211 12245555666777765544444333
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------------HHHHH
Q 005133 511 YHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------------------AYGHT 572 (713)
Q Consensus 511 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~------------------~~a~~ 572 (713)
...+++...+.++.. .|.+...-+..+......|+..+|.....++....... ..-+.
T Consensus 83 ~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp HHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred HhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 334455555543332 36777888888888888888777776666554332111 11222
Q ss_pred HHHHHHHHccCHHHHHHHHHH-------------HHHhCCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHH
Q 005133 573 LCGHEYVALEDFENGIRSYQS-------------ALRVDARHYNS-------------WYGLGMVYLRQEKFEFSEHHFR 626 (713)
Q Consensus 573 ~lg~~~~~~g~~eeAl~~~~~-------------al~~~p~~~~~-------------~~~lg~~y~~~g~~~eA~~~l~ 626 (713)
......+..|+...|..+... ++..+|..... ...++.......+.+.|...+.
T Consensus 159 ~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~ 238 (618)
T 1qsa_A 159 ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIP 238 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 233344445555444433322 12223432221 2223444445568899999998
Q ss_pred HHHHhCCCCHHH----HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 005133 627 MAFQISPHSSVI----MSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (713)
Q Consensus 627 kal~~~p~~~~~----~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~P~ 702 (713)
.......-+... ...+|.-+...+...++..++.+......+ ......++....+.|+++.|..+|+++-.-...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~ 317 (618)
T 1qsa_A 239 SLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRGLNTWLARLPMEAKE 317 (618)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG
T ss_pred hhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHccccccc
Confidence 876544334332 222333333344466888888887654443 334444555566779999999999876553334
Q ss_pred ChhHHHhcc
Q 005133 703 ESGVYALMG 711 (713)
Q Consensus 703 ~~~~~~~Lg 711 (713)
.+...|-+|
T Consensus 318 ~~r~~YW~~ 326 (618)
T 1qsa_A 318 KDEWRYWQA 326 (618)
T ss_dssp SHHHHHHHH
T ss_pred cHhHHHHHH
Confidence 455555444
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.55 E-value=1.2 Score=52.69 Aligned_cols=96 Identities=5% Similarity=-0.165 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Q 005133 502 GMDIYSTVLYHLKEDMKLSYLAQELITT----DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN-PRFAYGHTLCGH 576 (713)
Q Consensus 502 a~~~la~~l~~~g~~~~A~~~~~kal~~----~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~-p~~~~a~~~lg~ 576 (713)
.+..+...+.+.|+.++|..++.+..+. ..-+..+|..+...|.+.|+.++|.++|++..+.. .-+...|..+..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3455555566666666666665443321 22345555566666666666666666666555431 123455555555
Q ss_pred HHHHccC-HHHHHHHHHHHHHh
Q 005133 577 EYVALED-FENGIRSYQSALRV 597 (713)
Q Consensus 577 ~~~~~g~-~eeAl~~~~~al~~ 597 (713)
++.+.|+ .++|.++|+++.+.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHc
Confidence 5555554 34555666655553
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.72 E-value=0.68 Score=45.95 Aligned_cols=119 Identities=8% Similarity=0.093 Sum_probs=75.2
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005133 578 YVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIE 657 (713)
Q Consensus 578 ~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~ 657 (713)
+++.|..++|+......++..|.+......+..+++-.|+|+.|.+.++.+.+++|........+..+ -.|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE~ 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAAQ 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHHH
Confidence 45678888888888888888888888888888888888888888888888888888764422111100 00111
Q ss_pred HHHHHHHh--CC---CChhHH---HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 005133 658 MMEKAILA--DK---KNPLPM---YQKANILLSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 658 ~l~kal~~--~p---~~~~~~---~~la~~~~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
.=++.+.- .| ..+..| ..-+......|+.++|.+.-.++++..|..
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 11111110 11 122222 334555566788888888888888887654
No 255
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.36 E-value=3.7 Score=44.78 Aligned_cols=125 Identities=9% Similarity=-0.068 Sum_probs=58.1
Q ss_pred HHHccCCHHHHHHHHHcCcc-----------cCCCCHHHHHHHHHHHHHhhcHHHHH----------HHHHHHHHhC---
Q 005133 441 RMSCMYRCKDALDVYLKLPH-----------KHYNTGWVLSQVGKAYFEVVDYLEAE----------RAFTLARRAS--- 496 (713)
Q Consensus 441 ~l~~~g~~~eAi~~l~~~~~-----------~~~~~~~~~~~lg~~~~~~g~~~eA~----------~~~~kal~~~--- 496 (713)
.++..+++++|.++-..++. .+.-.+.+|++.+.++...|+..... ..+..+++..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 45678889988887765531 13345667888888887777765532 2333333332
Q ss_pred --CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005133 497 --PY-SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA-------PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR 566 (713)
Q Consensus 497 --p~-~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~-------~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~ 566 (713)
+. ....+..+...|.+.+.++.|..+..+.. .|.. ...++.+|.++..+++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 21 14456777888999999999999988885 4432 356778899999999999999999999988775
Q ss_pred C
Q 005133 567 F 567 (713)
Q Consensus 567 ~ 567 (713)
.
T Consensus 303 ~ 303 (523)
T 4b4t_S 303 N 303 (523)
T ss_dssp S
T ss_pred c
Confidence 4
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.20 E-value=1.9 Score=42.81 Aligned_cols=56 Identities=11% Similarity=0.021 Sum_probs=23.8
Q ss_pred HccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 005133 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY 498 (713)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~ 498 (713)
++.|..++|++.+...++..|.+......+...++-.|+|+.|.+-++.+.+++|.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 33444444444444444444444444444444444444444444444444444443
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.17 E-value=0.53 Score=51.62 Aligned_cols=81 Identities=7% Similarity=-0.024 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA 648 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 648 (713)
..+..+|.+......++.|..+|.+|+.+.|+....++.||.+....|+.-+|+-+|.+++......+.+..++..++.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35667888888888999999999999999999999999999999999999999999999998877788888888877765
Q ss_pred c
Q 005133 649 L 649 (713)
Q Consensus 649 ~ 649 (713)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 258
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.75 E-value=0.74 Score=50.48 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~ 614 (713)
..+..+|.+......++.|..+|.+|..+.|.....|..+|.+....|+.-+|+-+|-+++......+.+..++...+.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999877789999998887754
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.73 E-value=0.84 Score=49.19 Aligned_cols=99 Identities=9% Similarity=0.013 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCH----HH
Q 005133 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASP---YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDR--LAP----QS 536 (713)
Q Consensus 466 ~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p---~~~~a~~~la~~l~~~g~~~~A~~~~~kal~~~p--~~~----~~ 536 (713)
..++..+|..|+..|++++|.+.|.++..... .-.+.+.....++...+++..+...+.++..... .++ ..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 34667899999999999999999999887643 2366777778888888999998888888765422 222 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005133 537 WCAMGNCYSLQKDHETALKNFQRAVQLN 564 (713)
Q Consensus 537 ~~~la~~~~~~g~~~~Al~~~~kal~~~ 564 (713)
....|.++...++|.+|..+|..++...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 4556777888899999999988877653
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.45 E-value=10 Score=46.06 Aligned_cols=205 Identities=11% Similarity=-0.024 Sum_probs=112.7
Q ss_pred HHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHH
Q 005133 441 RMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRAS-PYSLEGMDIYSTVLYHLKEDMKL 519 (713)
Q Consensus 441 ~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~-p~~~~a~~~la~~l~~~g~~~~A 519 (713)
.+...++++-|.++.. -.+.++...+.+|.+++..|++++|..+|+++-.-- ..... ......
T Consensus 821 ~l~~~~~~~~~~~l~~----~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l-----------~~~~~~- 884 (1139)
T 4fhn_B 821 KLFLFKQYNACMQLIG----WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ-----------FAVLRE- 884 (1139)
T ss_dssp HHHHHSCTTHHHHHHH----HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS-----------CSSHHH-
T ss_pred HHHHhhhHHHHHHHhh----hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh-----------hhhhcc-
Confidence 3455666666665443 234566777889999999999999999998874211 11000 000000
Q ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCH----HHHHHHHHHHHHccCHHHHHHHH
Q 005133 520 SYLAQELITT---DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNP-RFA----YGHTLCGHEYVALEDFENGIRSY 591 (713)
Q Consensus 520 ~~~~~kal~~---~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p-~~~----~a~~~lg~~~~~~g~~eeAl~~~ 591 (713)
....... ....+..|..+..++...+.++.++++.+.|++..+ ++. ..|..+-..+...|+|++|...+
T Consensus 885 ---~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 885 ---FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp ---HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred ---cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 1111111 122345667777788888888888888888887643 332 24666667778888888887777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHH------------HHHHHHHH-HHHh-CCCC-HHHHHHHHHHHHHcCChHHH-
Q 005133 592 QSALRVDARHYNSWYGLGMVYLRQEKFE------------FSEHHFRM-AFQI-SPHS-SVIMSYLGTAMHALKRSGEA- 655 (713)
Q Consensus 592 ~~al~~~p~~~~~~~~lg~~y~~~g~~~------------eA~~~l~k-al~~-~p~~-~~~~~~la~~~~~~g~~eeA- 655 (713)
...-.. .....++..+...++..|..+ +..+.+.. |-.. ++.+ +..|..|--.+...|+|..|
T Consensus 962 ~~~pd~-~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA 1040 (1139)
T 4fhn_B 962 MVLSTT-PLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAA 1040 (1139)
T ss_dssp HHHHHS-SSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHH
T ss_pred HhCCCH-HHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHH
Confidence 544322 223455555555555444433 33333321 1111 1121 23344344445556666644
Q ss_pred HHHHHHHHHh
Q 005133 656 IEMMEKAILA 665 (713)
Q Consensus 656 l~~l~kal~~ 665 (713)
.-+|+++.++
T Consensus 1041 ~vmYe~~~RL 1050 (1139)
T 4fhn_B 1041 AIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5566666554
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.43 E-value=0.75 Score=49.61 Aligned_cols=97 Identities=11% Similarity=0.065 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCH----HHH
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNP---RFAYGHTLCGHEYVALEDFENGIRSYQSALRVD--ARHY----NSW 605 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~kal~~~p---~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~--p~~~----~~~ 605 (713)
.++..+|..|...|++++|.++|.++..... .-...+..+..++...+++..+..++.++.... ..++ ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4566677777777777777777777665422 224556666666666777777777777665431 1121 123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAFQI 631 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal~~ 631 (713)
...|.++...++|.+|..+|-.++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 33455555666676666666665544
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.21 E-value=2.1 Score=52.18 Aligned_cols=141 Identities=10% Similarity=-0.029 Sum_probs=92.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------------
Q 005133 540 MGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV---------------------- 597 (713)
Q Consensus 540 la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~---------------------- 597 (713)
+...+...+.++-|.+ .+...+.++...+.+|.++...|++++|..+|+++..-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3344555566655443 33456677777788999999999999999999876321
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 005133 598 -DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH-SS----VIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPL 671 (713)
Q Consensus 598 -~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~-~~----~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~ 671 (713)
....+..|..+..++.+.+.++.+++..+.|++..+. +. ..|..+=..+...|+|++|...+-..-. ......
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~~ 972 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKKS 972 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHHH
Confidence 0112345677778888889999999999988887543 32 2566777778888999998777754322 122344
Q ss_pred HHHHHHHHHHHcCC
Q 005133 672 PMYQKANILLSLEK 685 (713)
Q Consensus 672 ~~~~la~~~~~~g~ 685 (713)
.+..+....++.|.
T Consensus 973 cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCC
Confidence 45555554444444
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.55 E-value=3.6 Score=48.27 Aligned_cols=249 Identities=11% Similarity=0.003 Sum_probs=131.7
Q ss_pred HHccCCHHHHHHHHHcCcccC-CC----CHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC---C---CH----HHHHHH
Q 005133 442 MSCMYRCKDALDVYLKLPHKH-YN----TGWVLSQVGKAYFEVVDYLEAERAFTLARRASP---Y---SL----EGMDIY 506 (713)
Q Consensus 442 l~~~g~~~eAi~~l~~~~~~~-~~----~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p---~---~~----~a~~~l 506 (713)
.+..|+.++++..+.+.+... .. ..-+++.+|.++...+ .+++.++...+..+. . .. .+...+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 456788899999999887632 12 3446667777666655 468888888876543 0 11 122233
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 005133 507 STVLYHLKEDMKLSYLAQELITTDRLAP--QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDF 584 (713)
Q Consensus 507 a~~l~~~g~~~~A~~~~~kal~~~p~~~--~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~ 584 (713)
|.++...+ .+++...+...+..+.... .+-+.+|.++...|+-+.....+..+.+...+...-...+|..+...|+.
T Consensus 462 Gla~~GS~-~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSA-NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCC-CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCC-CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 33333333 3456666666665443211 34556788888888877777777766654333333334455555567777
Q ss_pred HHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005133 585 ENGIRSYQSALRVDARHYN----SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMME 660 (713)
Q Consensus 585 eeAl~~~~~al~~~p~~~~----~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~ 660 (713)
+.+..+.+.... .. ++. +-+.+|..|...|+...-.+++..+..-..++..-..-+|..+...|+.+.+...+.
T Consensus 541 e~~~~li~~L~~-~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLA-SD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHH-CS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 766666665444 22 233 334567777788886554446666554322222222223333334455443333332
Q ss_pred HHHHhCCCChhHHHHHHHHHHHc--CC-HHHHHHHHHHHH
Q 005133 661 KAILADKKNPLPMYQKANILLSL--EK-FDEALEVLEELK 697 (713)
Q Consensus 661 kal~~~p~~~~~~~~la~~~~~~--g~-~~eA~~~~~kal 697 (713)
...+ ..++.+.+..+.++-.. |. ..+|+..+.++.
T Consensus 619 ~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 2221 22444444333333222 21 145555555553
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.93 E-value=2.1 Score=35.39 Aligned_cols=73 Identities=15% Similarity=0.042 Sum_probs=64.0
Q ss_pred hhccchhhHHHHHhhhhcCCCchh-HHHHHHHHhhcCCHHHHHHHHhcCCCcchhHHHHHHHhhcCChhHHHHhh
Q 005133 14 RYFMYRNAIFLCERLCAEFPSEVN-LQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSEAEAAL 87 (713)
Q Consensus 14 ~~~~~~~A~flaerl~a~~~~~~~-~~llA~~~~~~~~~~~A~~~l~~~~~~~~~~l~A~~~~~l~~~~ea~~~L 87 (713)
-+|.++.|.-.|+-|..... ++. ...-...++..|+|.+|+.+++..-.|.+--++|.|-.++|--++++.-|
T Consensus 19 G~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHH
Confidence 36888999999999988877 664 45558889999999999999999889999999999999999999998877
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.55 E-value=23 Score=35.98 Aligned_cols=82 Identities=12% Similarity=-0.002 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHH
Q 005133 600 RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL---KRSGEAIEMMEKAILADKKNPLPMYQK 676 (713)
Q Consensus 600 ~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~---g~~eeAl~~l~kal~~~p~~~~~~~~l 676 (713)
.++..+..+|..|.+.|++.+|..+|-.. +.+++..+..+-.-+... |...+ ...+...
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e---------------~dlf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDST---------------VAEFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHH---------------HHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcch---------------HHHHHHH
Confidence 57889999999999999999998888421 111344333332222222 32222 2222222
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHHH
Q 005133 677 -ANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 677 -a~~~~~~g~~~eA~~~~~kal~l 699 (713)
...|...|+...|...++...+.
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33466788888888888776543
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.89 E-value=2.1 Score=35.31 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=62.9
Q ss_pred hhccchhhHHHHHhhhhcCCCchh-HHHHHHHHhhcCCHHHHHHHHhcCCCcchhHHHHHHHhhcCChhHHHHhh
Q 005133 14 RYFMYRNAIFLCERLCAEFPSEVN-LQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSEAEAAL 87 (713)
Q Consensus 14 ~~~~~~~A~flaerl~a~~~~~~~-~~llA~~~~~~~~~~~A~~~l~~~~~~~~~~l~A~~~~~l~~~~ea~~~L 87 (713)
-+|.++.|.-.|+-|..... ++. ...-...++..|+|.+|+.+++..-.|.+--++|.|-.++|--++++.-|
T Consensus 18 G~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHH
Confidence 36888999999999988877 664 45557889999999999999998889999999999999999999988877
No 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.10 E-value=9.7 Score=44.75 Aligned_cols=244 Identities=10% Similarity=-0.021 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCcccCC----------CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCH--
Q 005133 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHY----------NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL-- 500 (713)
Q Consensus 433 l~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~----------~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~-- 500 (713)
-..++.|... .|...+++.++...+.... -...+-..+|.++...++ +++++.+..++..+....
T Consensus 414 GAllaLGli~--ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~ 490 (963)
T 4ady_A 414 GSLYGLGLIY--AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGE 490 (963)
T ss_dssp HHHHHHHHHT--TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHH
Confidence 3455555544 4444578887777654332 011244466666665555 567777888776543211
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHH
Q 005133 501 EGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYG----HTLCGH 576 (713)
Q Consensus 501 ~a~~~la~~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a----~~~lg~ 576 (713)
.+-..+|.++...|+.+....+++.+.+...+...-...+|..+...|+.+.+-...+..... . ++.. ...+|.
T Consensus 491 ~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~-dp~vRygaa~algl 568 (963)
T 4ady_A 491 AAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-D-ESLLRYGGAFTIAL 568 (963)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-S-CHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-C-CHHHHHHHHHHHHH
Confidence 233455556666677766666766666544333333344555566777777666666655442 2 3332 345677
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CC-hH
Q 005133 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL--KR-SG 653 (713)
Q Consensus 577 ~~~~~g~~eeAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~--g~-~e 653 (713)
.|...|+...-..++..+..-..++..-..-+|......|+.+.+.+.+....+ ..++.+.+..+.++-.. |. ..
T Consensus 569 AyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~ 646 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQ 646 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCH
T ss_pred HhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcH
Confidence 788899966544466666653323333333333334445555444444433222 34566666655555444 33 36
Q ss_pred HHHHHHHHHHHhCCCCh---hHHHHHHHHHHHcC
Q 005133 654 EAIEMMEKAILADKKNP---LPMYQKANILLSLE 684 (713)
Q Consensus 654 eAl~~l~kal~~~p~~~---~~~~~la~~~~~~g 684 (713)
+|+..+.+... ++++. .+...||.+.....
T Consensus 647 ~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 647 SAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCc
Confidence 78888877753 33321 23455555554433
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.99 E-value=49 Score=33.89 Aligned_cols=196 Identities=12% Similarity=0.039 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHccCCH---HHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005133 432 LLRILGEGYRMSCMYRC---KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYST 508 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~---~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~ 508 (713)
+-+.+.+-...+..|+| =||-+.|+. ++.-|...++|++|++++... +.
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RT--------------i~~Ry~~~k~y~eAidLL~~G--------------A~ 63 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRL--------------VAARYSKQGNWAAAVDILASV--------------SQ 63 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHH--------------HH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHH--------------HHHHHHhhcCHHHHHHHHHHH--------------HH
Confidence 34555666667889999 888877753 455588899999999886665 34
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHH
Q 005133 509 VLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK--DHETALKNFQRAVQLNP-RFAYGHTLCGHEYVALEDFE 585 (713)
Q Consensus 509 ~l~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g--~~~~Al~~~~kal~~~p-~~~~a~~~lg~~~~~~g~~e 585 (713)
.+...|+...+.++..-++ .+|...+ --++.+.-+.+.+..-| ..+.- ..-..
T Consensus 64 ~ll~~~Q~~sg~DL~~llv--------------evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r----------~~fi~ 119 (336)
T 3lpz_A 64 TLLRSGQGGSGGDLAVLLV--------------DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR----------KRFVK 119 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHH--------------HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH----------HHHHH
T ss_pred HHHHCCCcchHHHHHHHHH--------------HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH----------HHHHH
Confidence 4566677666665543322 2222221 01223333333333333 23221 11123
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005133 586 NGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS-SVIMSYLGTAMHALKRSGEAIEMMEKAIL 664 (713)
Q Consensus 586 eAl~~~~~al~~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~p~~-~~~~~~la~~~~~~g~~eeAl~~l~kal~ 664 (713)
+|+.+-.+.=...-.++..+..+|..|.+.+++.+|..+|- + ..++ +..+..+-.-+...+.
T Consensus 120 ~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~------------- 182 (336)
T 3lpz_A 120 EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDE------------- 182 (336)
T ss_dssp HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSC-------------
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcC-------------
Confidence 34444433211233578999999999999999999999883 1 2222 2444333222222222
Q ss_pred hCCCChhHHHHH-HHHHHHcCCHHHHHHHHHHHHH
Q 005133 665 ADKKNPLPMYQK-ANILLSLEKFDEALEVLEELKE 698 (713)
Q Consensus 665 ~~p~~~~~~~~l-a~~~~~~g~~~eA~~~~~kal~ 698 (713)
|.....+... ...|...++...|...+....+
T Consensus 183 --~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 --SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2233333333 3457788999999887666554
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=81.94 E-value=22 Score=31.44 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCcccCCC
Q 005133 431 GLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYN 464 (713)
Q Consensus 431 ~ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~ 464 (713)
++++.|..|..++-.|..++.+++..+.....+.
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~ssni 39 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTK 39 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCc
Confidence 3667788888888899999999999988766553
No 270
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.89 E-value=6 Score=47.16 Aligned_cols=97 Identities=12% Similarity=-0.005 Sum_probs=70.3
Q ss_pred CchhHHHHHHHHhhcCCHHHHHHHHhcC-CCcchhHHHHHHHhhcCChhHHHHhhCCCCCC------Cc-----------
Q 005133 34 SEVNLQLLATCYLQNNQAYAAYNILKGT-QMALSRYLFAVACYQMDLLSEAEAALSPVNEP------SA----------- 95 (713)
Q Consensus 34 ~~~~~~llA~~~~~~~~~~~A~~~l~~~-~~~~~~~l~A~~~~~l~~~~ea~~~L~~~~~~------~~----------- 95 (713)
.+.....++..+...|+++-|.++++=+ .++...|++|+||++.|++++|...+++.-.. ..
T Consensus 809 ~~~~~~~l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 809 ENDLVTELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp SCCHHHHHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH
T ss_pred CCccHHHHHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC
Confidence 3445555666667788999998888766 56778899999999999999999988754110 00
Q ss_pred --cCcchHHHHHH-HHHHHHhcCChhHHHHHHHHHhhh
Q 005133 96 --EIPNGAAGHYL-MGLIYRYTDRRKNAIHHYKMALSI 130 (713)
Q Consensus 96 --~~p~~a~~~~l-lg~~~~~~~~~~~A~~~y~~Al~~ 130 (713)
+.+..-..||+ ..++++..+-...++++-+.||..
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 01111223443 578999999999999999999964
No 271
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=73.43 E-value=6.7 Score=41.53 Aligned_cols=110 Identities=13% Similarity=0.105 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhccchhhHHHHHhhhhcCCCchhH-HHHHHHHhhcC----CHHHHHHHHhcCCCcchhHHHHHHHhhcCC
Q 005133 5 LTDCVQNSLRYFMYRNAIFLCERLCAEFPSEVNL-QLLATCYLQNN----QAYAAYNILKGTQMALSRYLFAVACYQMDL 79 (713)
Q Consensus 5 l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~~-~llA~~~~~~~----~~~~A~~~l~~~~~~~~~~l~A~~~~~l~~ 79 (713)
++.+|+.||+.+++.+|+.+|- ..+++.+ -.--+.|++.. .+-+.+..+-.-+... -.+..++++
T Consensus 159 ~e~AV~~cl~~~r~adAllLA~-----~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d-----~V~~~~l~~ 228 (399)
T 2pm7_A 159 IKSAVKNSLENDLMMEAMVIAL-----DSNNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDD-----LVENLDVSQ 228 (399)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHH-----HHHHBCGGG
T ss_pred HHHHHHHHHHCCChHHHHHHHH-----hcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHH-----HHhcCChhh
Confidence 4567788888888888877763 3445555 44455666543 2333222211111111 123458999
Q ss_pred hhHHHHhhCCCCCCCccCcc--h-HHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 005133 80 LSEAEAALSPVNEPSAEIPN--G-AAGHYLMGLIYRYTDRRKNAIHHYKMALS 129 (713)
Q Consensus 80 ~~ea~~~L~~~~~~~~~~p~--~-a~~~~llg~~~~~~~~~~~A~~~y~~Al~ 129 (713)
|+|++.+|..+ .-|+ . ...+-.||+-....|+++.|.-||.-|=.
T Consensus 229 WkE~La~i~t~-----a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~ 276 (399)
T 2pm7_A 229 WKFISKAIQNL-----YPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGS 276 (399)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhc-----CCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCC
Confidence 99999998631 1244 3 44566999999999999999999998843
No 272
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=73.22 E-value=4.3 Score=43.75 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHhhcCChhHHHHhhCCC---CC--CCccCcch--HHHHHHHHHHHHhcCChhHHHHHHHHHhhh-CCcc
Q 005133 72 VACYQMDLLSEAEAALSPV---NE--PSAEIPNG--AAGHYLMGLIYRYTDRRKNAIHHYKMALSI-DPLL 134 (713)
Q Consensus 72 ~~~~~l~~~~ea~~~L~~~---~~--~~~~~p~~--a~~~~llg~~~~~~~~~~~A~~~y~~Al~~-~p~~ 134 (713)
++|+++++.+-|..++... .. ....+|.+ ..=+|++|+++...++..+|-+++..|++. +|.-
T Consensus 184 kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 184 NIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 8899999999998888542 11 23445544 557899999999999999999999999999 8864
No 273
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=72.43 E-value=0.00022 Score=76.37 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=86.7
Q ss_pred HHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 005133 442 MSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSY 521 (713)
Q Consensus 442 l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~~~A~~ 521 (713)
.+..++..+||+.|-++-+.. .+.....+..+.|.|++-+.++.-+.+.-. .+..-..+..+|.+.++..+..+
T Consensus 64 qL~~~~v~eAIdsyIkA~Dps-----~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~ayAk~~rL~elEe 137 (624)
T 3lvg_A 64 QLQKGMVKEAIDSYIKADDPS-----SYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEE 137 (624)
T ss_dssp TTTSSSCTTTTTSSCCCSCCC-----SSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHHHHTSCSSSTTTS
T ss_pred HHccCchHHHHHHHHhCCChH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHHHHhhCcHHHHHH
Confidence 355566666666665543221 223344444556666666666665554422 22222344455555554433222
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 005133 522 LAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH 601 (713)
Q Consensus 522 ~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~ 601 (713)
++ ..|+. .-...+|.-++..|.|+.|.-+|..+ .-|..|+.++..+|+|..|++.-++| ++
T Consensus 138 fl-----~~~N~-A~iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKA-----ns 198 (624)
T 3lvg_A 138 FI-----NGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NS 198 (624)
T ss_dssp TT-----SCCSS-SCTHHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CS
T ss_pred HH-----cCCCc-ccHHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CC
Confidence 11 01111 11223344444444444443333221 11223444455555555555444433 22
Q ss_pred HHHHHHHH------------------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005133 602 YNSWYGLG------------------------------MVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR 651 (713)
Q Consensus 602 ~~~~~~lg------------------------------~~y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~ 651 (713)
..+|-... ..|...|.|++-+.+++.++.+..-+...+..||.+|.+- +
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-C
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-C
Confidence 23333333 3344555666666666666655555555666666555543 3
Q ss_pred hHHHHHHH
Q 005133 652 SGEAIEMM 659 (713)
Q Consensus 652 ~eeAl~~l 659 (713)
.++-.+++
T Consensus 278 PeKlmEHl 285 (624)
T 3lvg_A 278 PQKMREHL 285 (624)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 34433333
No 274
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=63.43 E-value=7.8 Score=36.81 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=36.4
Q ss_pred ccCcch--HHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCcchHHHHHH
Q 005133 95 AEIPNG--AAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEEL 141 (713)
Q Consensus 95 ~~~p~~--a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~~~~a~~~L 141 (713)
.++|.+ ..=+|++|+++...++..+|-+++..|++.+|.-...+-.+
T Consensus 6 ~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~ 54 (203)
T 3t5x_A 6 DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRM 54 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHH
Confidence 345555 44689999999999999999999999999999655555443
No 275
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=62.03 E-value=85 Score=37.15 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005133 672 PMYQKANILLSLEKFDEALEVLEELKEY 699 (713)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~~~kal~l 699 (713)
.|.+.+.++.+.+-++-++...+.|++.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 4556666677777777777777777753
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.32 E-value=1.1e+02 Score=28.64 Aligned_cols=49 Identities=4% Similarity=0.051 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005133 584 FENGIRSYQSALRV--DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (713)
Q Consensus 584 ~eeAl~~~~~al~~--~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~ 632 (713)
..++..+|.-+... .-..+..|...|..+...|++.+|.+.|+.+++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555555554432 33445555556666666666666666666666544
No 277
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=59.03 E-value=44 Score=30.23 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcccCCCC--------HHHH-HHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT--------GWVL-SQVGKAYFEVVDYLEAERAFTLARRA 495 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~~~~~~--------~~~~-~~lg~~~~~~g~~~eA~~~~~kal~~ 495 (713)
.-..+..+..++..|+|-+|-++++.+-...+.. +.+. ...|..+...|+...|...+.+++..
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4456778888899999999999999987665433 2223 33444556679999999999998774
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.90 E-value=1.2e+02 Score=28.47 Aligned_cols=49 Identities=4% Similarity=-0.063 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 005133 550 HETALKNFQRAVQL--NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD 598 (713)
Q Consensus 550 ~~~Al~~~~kal~~--~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~~~ 598 (713)
..++..+|..+... .-..+..|...|..+...|++.+|..+|+.+++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555555544433 23334445555555555555555555555555543
No 279
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=55.02 E-value=52 Score=35.09 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhccchhhHHHHHhhhhcCCCchhHHHHHHHHhh------------------------cCCHHHHHHHHhc
Q 005133 5 LTDCVQNSLRYFMYRNAIFLCERLCAEFPSEVNLQLLATCYLQ------------------------NNQAYAAYNILKG 60 (713)
Q Consensus 5 l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~~~llA~~~~~------------------------~~~~~~A~~~l~~ 60 (713)
..++|+.||+++++..|+.+|-.+ +++.+-.-.+.|++ .|+...+..-+..
T Consensus 166 ~e~Av~~al~~~lwa~ALlLAs~~-----g~e~~~~V~~~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~~~~V~~l~~ 240 (441)
T 3mzk_B 166 HDEALRLALSKRDYAIALLVGSLM-----GKDRWSEVIQKYLYEGFTAGPNDQKELAHFLLLIFQVFVGNSKMAIKSFYT 240 (441)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----CHHHHHHHHHHHHHCC------CTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHhc-----CHHHHHHHHHHHHHhhcccCCccccccccHHHHHHHHHcCCHHHHHHHhcc
Confidence 467888888888888888887543 22333333333443 2333333221110
Q ss_pred CCCcchhHHHHHHHhhcCChhHHHHhhCCCC----CCCccCcch-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005133 61 TQMALSRYLFAVACYQMDLLSEAEAALSPVN----EPSAEIPNG-AAGHYLMGLIYRYTDRRKNAIHHYKMA 127 (713)
Q Consensus 61 ~~~~~~~~l~A~~~~~l~~~~ea~~~L~~~~----~~~~~~p~~-a~~~~llg~~~~~~~~~~~A~~~y~~A 127 (713)
. -+.--..+.+|.|.+.++.... +....+|.. ...+.-||......|+...|.-||--|
T Consensus 241 ~--------~~~~~~~l~~Wre~lA~IlsN~~~~~~~~~~~p~~~~~~l~~LGd~L~~~g~~~aAhiCYL~a 304 (441)
T 3mzk_B 241 N--------NETSQWASENWKSIVAAVLINIPENNEDPLLIPPVVLEFLIEFGIFLTKKGLTAAASTLFIIG 304 (441)
T ss_dssp C--------HHHHHHHHHSHHHHHHHHHHTSCCCSSCTTCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred C--------CccccchHhHHHHHHHHHHhCCCCchhhcccccchHHHHHHHHHHHHHhCCCcchhHHhHhcc
Confidence 0 0112236778999988775321 111224444 346778999999999998898888754
No 280
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=51.67 E-value=13 Score=28.82 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=26.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhhCCcc
Q 005133 106 LMGLIYRYTDRRKNAIHHYKMALSIDPLL 134 (713)
Q Consensus 106 llg~~~~~~~~~~~A~~~y~~Al~~~p~~ 134 (713)
-+|..+...|+.++|+.||-+||+.+|.=
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 58999999999999999999999998753
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=51.15 E-value=1.7e+02 Score=29.63 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHcCc
Q 005133 429 LLGLLRILGEGYRMSCMYRCKDALDVYLKLP 459 (713)
Q Consensus 429 l~~ll~~l~~a~~l~~~g~~~eAi~~l~~~~ 459 (713)
+..+...+..|+.+...|++.+|+..|+.++
T Consensus 111 l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL 141 (325)
T 3mv2_A 111 LDVVNEKMNEGYKNFKLNKPDIAIECFREAI 141 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3345557889999999999999999999864
No 282
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=50.15 E-value=1.4e+02 Score=28.69 Aligned_cols=162 Identities=10% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL--KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSL 546 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~--g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 546 (713)
+..++++..+.++|++.+.+.+++.+.++.-..--..+-.+.++. |....+...+....+.......-...--.--++
T Consensus 8 ~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i~~yr 87 (234)
T 2br9_A 8 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYR 87 (234)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHh--------
Q 005133 547 QKDHETALKNFQRAVQL-----------NPRFAYGHTLCGHEYVALEDF----------ENGIRSYQSALRV-------- 597 (713)
Q Consensus 547 ~g~~~~Al~~~~kal~~-----------~p~~~~a~~~lg~~~~~~g~~----------eeAl~~~~~al~~-------- 597 (713)
..--.+-...+..++.+ .......+...|..|...-++ +.|...|+.|+.+
T Consensus 88 ~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pt 167 (234)
T 2br9_A 88 QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPT 167 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCC
Q ss_pred CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 005133 598 DARHYNSWYGLGMVYLR-QEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 598 ~p~~~~~~~~lg~~y~~-~g~~~eA~~~l~kal~ 630 (713)
+|-......+.+..|+. .++.++|..+.++++.
T Consensus 168 hPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 168 HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 283
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=47.75 E-value=2.2e+02 Score=32.02 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=20.1
Q ss_pred HHHHHH--HHHcCCHHHHHHHHHHHHHHCCCC
Q 005133 674 YQKANI--LLSLEKFDEALEVLEELKEYAPRE 703 (713)
Q Consensus 674 ~~la~~--~~~~g~~~eA~~~~~kal~l~P~~ 703 (713)
..+..+ ++..|+++.|++.+++ +.+-|-+
T Consensus 540 l~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 540 LNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 334444 4789999999999987 4455654
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.17 E-value=1.2e+02 Score=27.13 Aligned_cols=46 Identities=4% Similarity=-0.033 Sum_probs=24.6
Q ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005133 587 GIRSYQSALR--VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (713)
Q Consensus 587 Al~~~~~al~--~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~ 632 (713)
+..+|.-+.. +.-..+..|...|..+...|++.+|.+.|+.+++..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444444433 233345555555666666666666666666666543
No 285
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=44.68 E-value=68 Score=34.34 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 638 IMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 638 ~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
.++++|.++...++|.+|.+.+..|+..
T Consensus 222 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3445555555555555555555555554
No 286
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=44.55 E-value=1.7e+02 Score=25.91 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=27.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005133 612 YLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAIL 664 (713)
Q Consensus 612 y~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~ 664 (713)
+..+|+-++-.+.+...+.-.+-++.++..+|.+|.+.|+..+|.+.+.+|.+
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34445555555555444444444455555566666666665555555555544
No 287
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=44.12 E-value=50 Score=25.55 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVI 638 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal~~~p~~~~~ 638 (713)
..+|..+...|++++|..+|-+|+...|.-..+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 345666666777777777777777766655443
No 288
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=44.07 E-value=1.4e+02 Score=24.76 Aligned_cols=90 Identities=17% Similarity=-0.056 Sum_probs=64.9
Q ss_pred HHHHhhhhcCC--CchhHHHHHHHHhhcCCHHHHHHHHhcCCCcchhHHHHHHHhhcCChhHHHHhhCCCCCCCccCcch
Q 005133 23 FLCERLCAEFP--SEVNLQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSEAEAALSPVNEPSAEIPNG 100 (713)
Q Consensus 23 flaerl~a~~~--~~~~~~llA~~~~~~~~~~~A~~~l~~~~~~~~~~l~A~~~~~l~~~~ea~~~L~~~~~~~~~~p~~ 100 (713)
.|||.-++-+. +.+-.-.+|.|+-..+. .+|..++ -.-.+...|+|++|...+++ .+ .
T Consensus 8 lLAE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lI-----------R~sSLmNrG~Yq~Al~l~~~-------~c-~ 67 (115)
T 2uwj_G 8 ELAELALAGSGQHCHEEALCIAEWLERLGQ-DEAARLI-----------RISSLANQGRYQEALAFAHG-------NP-W 67 (115)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHH-----------HHHHHHHTTCHHHHHGGGTT-------CC-C
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHH-----------HHHHHHcchhHHHHHHhcCC-------CC-C
Confidence 45555554443 46678889999999999 8886554 45678889999999999963 22 3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH-HHHhhhCC
Q 005133 101 AAGHYLMGLIYRYTDRRKNAIHHY-KMALSIDP 132 (713)
Q Consensus 101 a~~~~llg~~~~~~~~~~~A~~~y-~~Al~~~p 132 (713)
+.+-.|++.+--+.|...++.... +-+-+-+|
T Consensus 68 pdlepw~ALce~rlGl~s~le~rL~~la~sg~p 100 (115)
T 2uwj_G 68 PALEPWFALCEWHLGLGAALDRRLAGLGGSSDP 100 (115)
T ss_dssp GGGHHHHHHHHHHTTCHHHHHHHHHHHHTCSSH
T ss_pred chHHHHHHHHHHhcccHHHHHHHHHHHHhCCCH
Confidence 445668888888899988887776 55555554
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.99 E-value=1.3e+02 Score=27.20 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=26.9
Q ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005133 587 GIRSYQSALR--VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (713)
Q Consensus 587 Al~~~~~al~--~~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~ 632 (713)
+..+|..+.. +.-..+..|...|..+...|++.+|.+.|+.+++..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444444443 233455666666666666666666666666666654
No 290
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=41.69 E-value=31 Score=27.47 Aligned_cols=23 Identities=26% Similarity=0.127 Sum_probs=16.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 005133 642 LGTAMHALKRSGEAIEMMEKAIL 664 (713)
Q Consensus 642 la~~~~~~g~~eeAl~~l~kal~ 664 (713)
.|.-.-+.|++++|+.+|..+++
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 34445677888888888877765
No 291
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=41.37 E-value=1.1e+02 Score=27.50 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=58.2
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHhcC---CC-cchhHHHHHHHhhcCChh-HH-HHhhCCCCCCCccCcchHHHHHHHHHH
Q 005133 37 NLQLLATCYLQNNQAYAAYNILKGT---QM-ALSRYLFAVACYQMDLLS-EA-EAALSPVNEPSAEIPNGAAGHYLMGLI 110 (713)
Q Consensus 37 ~~~llA~~~~~~~~~~~A~~~l~~~---~~-~~~~~l~A~~~~~l~~~~-ea-~~~L~~~~~~~~~~p~~a~~~~llg~~ 110 (713)
..++-|...|...+|......|++. .. ...+|.+|.++++..... +. ..+|. .+. -.+.-.||+=-|
T Consensus 10 ~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln---~it----lkSde~yL~YWI 82 (161)
T 2ynq_A 10 EAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSN---NIT----LKTDEQYMLYWI 82 (161)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHH---TCC----TTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHh---hCC----ccCCHHHHHHHH
Confidence 5677899999999999999999988 23 389999999999987743 33 33341 111 111125666668
Q ss_pred HHhcCChhHHHHH
Q 005133 111 YRYTDRRKNAIHH 123 (713)
Q Consensus 111 ~~~~~~~~~A~~~ 123 (713)
|.+.|+.++|+..
T Consensus 83 yiGRg~~~eAlDi 95 (161)
T 2ynq_A 83 YIGRSQSEEALEL 95 (161)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHcCCchHHHHHH
Confidence 9999999998875
No 292
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=41.17 E-value=1.4e+02 Score=24.68 Aligned_cols=91 Identities=11% Similarity=-0.021 Sum_probs=64.5
Q ss_pred HHHHHhhhhcCC--CchhHHHHHHHHhhcCCHHHHHHHHhcCCCcchhHHHHHHHhhcCChhHHHHhhCCCCCCCccCcc
Q 005133 22 IFLCERLCAEFP--SEVNLQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSEAEAALSPVNEPSAEIPN 99 (713)
Q Consensus 22 ~flaerl~a~~~--~~~~~~llA~~~~~~~~~~~A~~~l~~~~~~~~~~l~A~~~~~l~~~~ea~~~L~~~~~~~~~~p~ 99 (713)
..|||.-++-+. +.+-.-.+|.|+-..+. .+|..++ -.-.+...|+|++|...+++ .+
T Consensus 8 ~lLAE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lI-----------R~sSLmNrG~Yq~Al~l~~~-------~c- 67 (116)
T 2p58_C 8 VLLAEIALIGTGNHYHEEANCIAEWLHLKGE-EEAVQLI-----------RLSSLMNRGDYASALQQGNK-------LA- 67 (116)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHH-----------HHHHHHHTTCHHHHHHHHTT-------SC-
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHH-----------HHHHHHcchhHHHHHHhcCC-------CC-
Confidence 345665555443 46678889999999999 8886554 45677889999999999963 22
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHH-HHHhhhCC
Q 005133 100 GAAGHYLMGLIYRYTDRRKNAIHHY-KMALSIDP 132 (713)
Q Consensus 100 ~a~~~~llg~~~~~~~~~~~A~~~y-~~Al~~~p 132 (713)
.+.+-.|++.+--+.|...++.... +-+-+-+|
T Consensus 68 ~pdlepw~ALce~rlGl~s~le~rL~~la~sg~p 101 (116)
T 2p58_C 68 YPDLEPWLALCEYRLGLGSALESRLNRLARSQDP 101 (116)
T ss_dssp CGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCCCH
T ss_pred CchHHHHHHHHHHhcccHHHHHHHHHHHHhCCCH
Confidence 3345667888888888888777666 44444444
No 293
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=40.33 E-value=33 Score=27.25 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=17.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 005133 642 LGTAMHALKRSGEAIEMMEKAIL 664 (713)
Q Consensus 642 la~~~~~~g~~eeAl~~l~kal~ 664 (713)
.|.-.-+.|+|++|+.+|..+++
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 33445788899999888888775
No 294
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=39.01 E-value=2.8e+02 Score=27.00 Aligned_cols=162 Identities=10% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL--KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSL 546 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~--g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 546 (713)
+..+|++.-+.++|++.+++.+++.+.++.-..--.++-.+.++. |....+...+....+.......-...-..--++
T Consensus 34 lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i~~yr 113 (261)
T 3ubw_A 34 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYR 113 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHh-------CCCCHHH----HHHHHHHHHHccCH----------HHHHHHHHHHHHh--------
Q 005133 547 QKDHETALKNFQRAVQL-------NPRFAYG----HTLCGHEYVALEDF----------ENGIRSYQSALRV-------- 597 (713)
Q Consensus 547 ~g~~~~Al~~~~kal~~-------~p~~~~a----~~~lg~~~~~~g~~----------eeAl~~~~~al~~-------- 597 (713)
..=-.+-...+..++.+ ....+.. +...|..|...-++ +.|...|++|..+
T Consensus 114 ~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pT 193 (261)
T 3ubw_A 114 QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPT 193 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q ss_pred CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 005133 598 DARHYNSWYGLGMVYLR-QEKFEFSEHHFRMAFQ 630 (713)
Q Consensus 598 ~p~~~~~~~~lg~~y~~-~g~~~eA~~~l~kal~ 630 (713)
+|-......+.+..|+. .++.++|..+.++|+.
T Consensus 194 hPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 194 HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 295
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.66 E-value=1.3e+02 Score=27.02 Aligned_cols=60 Identities=7% Similarity=0.021 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H-H-----HH-HHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHS--S-V-----IM-SYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 606 ~~lg~~y~~~g~~~eA~~~l~kal~~~p~~--~-~-----~~-~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
+.-|..++..|+|-+|-+.++.+....+.. . . +. ...|..+.+.|+..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445666777788888888888888776544 1 1 22 33444556678999999999998874
No 296
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=36.49 E-value=63 Score=30.38 Aligned_cols=51 Identities=14% Similarity=-0.017 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHcCCHH
Q 005133 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNS-----WYGLGMVYLRQEKFE 619 (713)
Q Consensus 569 ~a~~~lg~~~~~~g~~eeAl~~~~~al~~~p~~~~~-----~~~lg~~y~~~g~~~ 619 (713)
...+.+|.++...++|.+|...+..|++..|..... +..+.-+-.-.|+..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 456778888888888888888888888887765322 333333445556654
No 297
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.76 E-value=4.4e+02 Score=29.49 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=18.0
Q ss_pred HHHHHHHH--HHcCChHHHHHHHHHH
Q 005133 639 MSYLGTAM--HALKRSGEAIEMMEKA 662 (713)
Q Consensus 639 ~~~la~~~--~~~g~~eeAl~~l~ka 662 (713)
+..+..++ +..|+++.|++.+++.
T Consensus 539 Ll~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 539 LLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 34445444 7889999999999884
No 298
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=34.13 E-value=3.8e+02 Score=26.99 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCcc
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLKLPH 460 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~~~~ 460 (713)
+...+..|+.+...|++.+|+..|+.++.
T Consensus 102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~ 130 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGKFEEAVEKFRSILL 130 (320)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44578999999999999999999998754
No 299
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=33.10 E-value=3.5e+02 Score=26.34 Aligned_cols=28 Identities=11% Similarity=-0.062 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARRAS 496 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~~~ 496 (713)
+..++++..+.++|++.+.+.+++.+.+
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~ 38 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSL 38 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC
Confidence 4456666666667777777766666655
No 300
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=32.91 E-value=3.5e+02 Score=26.31 Aligned_cols=55 Identities=13% Similarity=-0.040 Sum_probs=35.0
Q ss_pred HHHHHccCCHHHHHHHHHcCcccC--C-CCHHHHHHHHHHHHHh-hcHHHHHHHHHHHH
Q 005133 439 GYRMSCMYRCKDALDVYLKLPHKH--Y-NTGWVLSQVGKAYFEV-VDYLEAERAFTLAR 493 (713)
Q Consensus 439 a~~l~~~g~~~eAi~~l~~~~~~~--~-~~~~~~~~lg~~~~~~-g~~~eA~~~~~kal 493 (713)
|....+.++|++.+.++.++.... + -...-...+..+|-.. |....+.+.+..+-
T Consensus 15 AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissie 73 (260)
T 1o9d_A 15 AKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIE 73 (260)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 333455689999999999987654 3 3555555666665443 55666666655543
No 301
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=31.89 E-value=27 Score=28.58 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=25.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhhCCc
Q 005133 106 LMGLIYRYTDRRKNAIHHYKMALSIDPL 133 (713)
Q Consensus 106 llg~~~~~~~~~~~A~~~y~~Al~~~p~ 133 (713)
-+|..+...|+.+.|+.||-+||..+|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4899999999999999999999999875
No 302
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=31.12 E-value=2.1e+02 Score=23.03 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHc
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYLK 457 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~~ 457 (713)
....+.+|...-..|+|++|+.+|..
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~ 40 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQE 40 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44556667777777888888776643
No 303
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=28.99 E-value=2.3e+02 Score=29.08 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 566 RFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (713)
Q Consensus 566 ~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~ 596 (713)
...+.|..+|-.+++.+++.+|+..+-.+-.
T Consensus 294 ~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 294 HHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 3455555556666666666666666555443
No 304
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=28.76 E-value=2.1e+02 Score=22.45 Aligned_cols=30 Identities=10% Similarity=-0.104 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHc
Q 005133 428 DLLGLLRILGEGYRMSCMYRCKDALDVYLK 457 (713)
Q Consensus 428 ~l~~ll~~l~~a~~l~~~g~~~eAi~~l~~ 457 (713)
.+......+.+|...-..|+|++|+.+|.+
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~ 44 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKK 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344455566667777777777777766643
No 305
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=28.62 E-value=4.1e+02 Score=25.67 Aligned_cols=30 Identities=13% Similarity=0.027 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 005133 469 LSQVGKAYFEVVDYLEAERAFTLARRASPY 498 (713)
Q Consensus 469 ~~~lg~~~~~~g~~~eA~~~~~kal~~~p~ 498 (713)
+..+|++.-+.++|++.+.+.+++.+.++.
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~e 36 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEP 36 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 445666677777777777777777766553
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.45 E-value=2.1e+02 Score=27.26 Aligned_cols=47 Identities=2% Similarity=0.035 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005133 586 NGIRSYQSALRV--DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (713)
Q Consensus 586 eAl~~~~~al~~--~p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~~ 632 (713)
++..+|.-+... .-..+..|...|..+...|++.+|...|+.+++..
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344444444432 33445555566666666666666666666666554
No 307
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=28.43 E-value=69 Score=34.33 Aligned_cols=56 Identities=23% Similarity=0.087 Sum_probs=41.5
Q ss_pred CChhHHHHhhCCCCCCC---ccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCc
Q 005133 78 DLLSEAEAALSPVNEPS---AEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPL 133 (713)
Q Consensus 78 ~~~~ea~~~L~~~~~~~---~~~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~ 133 (713)
.+.++|+..|....... ..-++..+++-|||++|.-+++.++|+.+.++++...++
T Consensus 165 ~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~~~l 223 (460)
T 3snx_A 165 DDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKGYSL 223 (460)
T ss_dssp HHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 45678888884321111 123566789999999999999999999999999976444
No 308
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=28.21 E-value=2.4e+02 Score=29.00 Aligned_cols=66 Identities=23% Similarity=0.089 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 600 RHYNSWYGLGMVYLRQE--KFEFSEHHFRMAFQI-----SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 600 ~~~~~~~~lg~~y~~~g--~~~eA~~~l~kal~~-----~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
..+.++-+||.+-...- ....++.+|.+|+.. ...+..-|..+|-.+++.+++.+|+..+-.+-..
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 56778888887765432 223478888888765 3445566777888888888898888888777665
No 309
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.90 E-value=84 Score=25.41 Aligned_cols=26 Identities=27% Similarity=0.125 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 005133 638 IMSYLGTAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 638 ~~~~la~~~~~~g~~eeAl~~l~kal 663 (713)
.+...+..+.+.|+|++|+++.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455666666666666666666543
No 310
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.68 E-value=87 Score=25.34 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHH
Q 005133 470 SQVGKAYFEVVDYLEAERAFTLA 492 (713)
Q Consensus 470 ~~lg~~~~~~g~~~eA~~~~~ka 492 (713)
...+..+...|+|++||++.+++
T Consensus 19 ~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHH
Confidence 33444444444444444444444
No 311
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=27.52 E-value=0.55 Score=50.63 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=107.7
Q ss_pred HHHHHHHccCCHHHHHHHHHcCcccCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 005133 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (713)
Q Consensus 437 ~~a~~l~~~g~~~eAi~~l~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~~ 516 (713)
.-|..++..|.|+.|.-+|..+..- ..++.++..+|+|++|++.-+++ ++...|.....+....+++
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN~--------akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~Ef 215 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSNF--------GRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF 215 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCCC--------TTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTT
T ss_pred HHHHHHHHccCHHHHHHHHHhCccH--------HHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHH
Confidence 3466778899999998888776432 34677778888888888877765 4455566666666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (713)
Q Consensus 517 ~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~Al~~~~kal~~~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~ 596 (713)
.-|..+--.++-.. + -+-.+...|...|.+++-+..++.++.+..-....+..||.+|.+- +.++-.++++....
T Consensus 216 rLAqicGLniIvha-d---eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~s 290 (624)
T 3lvg_A 216 RLAQMCGLHIVVHA-D---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWS 290 (624)
T ss_dssp TTTTHHHHHHHCCS-S---CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS
T ss_pred HHHHHhcchhcccH-H---HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 65554433333211 1 1223345577778888888888888877777777788888777543 44444444432111
Q ss_pred -h-CCC------CHHHHHHHHHHHHHcCCHHHHH
Q 005133 597 -V-DAR------HYNSWYGLGMVYLRQEKFEFSE 622 (713)
Q Consensus 597 -~-~p~------~~~~~~~lg~~y~~~g~~~eA~ 622 (713)
+ -|. ....|..+..+|..-.+|+.|.
T Consensus 291 riNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 291 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 0 111 2345778888888888888775
No 312
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=26.85 E-value=94 Score=22.63 Aligned_cols=41 Identities=10% Similarity=-0.021 Sum_probs=22.9
Q ss_pred hccchhhHHHHHhhhhcCCCch-hHHHHHHHHhhcCCHHHHH
Q 005133 15 YFMYRNAIFLCERLCAEFPSEV-NLQLLATCYLQNNQAYAAY 55 (713)
Q Consensus 15 ~~~~~~A~flaerl~a~~~~~~-~~~llA~~~~~~~~~~~A~ 55 (713)
.|.++.|.-.||-|......++ .....+..+...|+|.+|+
T Consensus 19 ~HcH~EA~tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 19 HHCHQEAASIADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp TTCHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred chHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 5667777777777777766655 3455567777777777764
No 313
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=26.52 E-value=73 Score=26.01 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005133 607 GLGMVYLRQEKFEFSEHHFRMAFQISPHSS 636 (713)
Q Consensus 607 ~lg~~y~~~g~~~eA~~~l~kal~~~p~~~ 636 (713)
.+|..+...|+++.|+.+|-+|+...|.-.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 466667777777777777777776665543
No 314
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=26.34 E-value=2.4e+02 Score=22.28 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=13.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHH
Q 005133 434 RILGEGYRMSCMYRCKDALDVYL 456 (713)
Q Consensus 434 ~~l~~a~~l~~~g~~~eAi~~l~ 456 (713)
..+.+|...-..|+|++|+.+|.
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~ 40 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQ 40 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555556666666665554
No 315
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=26.15 E-value=4.6e+02 Score=25.49 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=11.9
Q ss_pred HHHHHHH-cCChHHHHHHHHHHHH
Q 005133 642 LGTAMHA-LKRSGEAIEMMEKAIL 664 (713)
Q Consensus 642 la~~~~~-~g~~eeAl~~l~kal~ 664 (713)
.+..|+. +++.++|....++++.
T Consensus 203 fSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 203 FSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333 4666666665555553
No 316
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.79 E-value=3.6e+02 Score=28.25 Aligned_cols=44 Identities=5% Similarity=0.129 Sum_probs=28.1
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 005133 553 ALKNFQRAVQL-----NPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (713)
Q Consensus 553 Al~~~~kal~~-----~p~~~~a~~~lg~~~~~~g~~eeAl~~~~~al~ 596 (713)
++..|.+++.. .....+.|..+|-.+.+.+++.+|+..+-.+-.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 34455555543 334566677777777777777777777777654
No 317
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=25.61 E-value=4.3e+02 Score=27.67 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005133 535 QSWCAMGNCYSLQKDHETALKNFQRA 560 (713)
Q Consensus 535 ~~~~~la~~~~~~g~~~~Al~~~~ka 560 (713)
.-|..+|.++++.+++.+|+..+..+
T Consensus 319 YPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 319 YPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cceeecchhhhhcchHHHHHHHHHHH
Confidence 33444444444444554444444443
No 318
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.82 E-value=3.2e+02 Score=24.55 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=49.7
Q ss_pred HHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHH
Q 005133 588 IRSYQSALRVDAR---------HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ--ISPHSSVIMSYLGTAMHALKRSGEAI 656 (713)
Q Consensus 588 l~~~~~al~~~p~---------~~~~~~~lg~~y~~~g~~~eA~~~l~kal~--~~p~~~~~~~~la~~~~~~g~~eeAl 656 (713)
..+++++++...+ ...+|..++... ++ +..+|..... +....+..|...|..+...|++.+|.
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 4455666554322 234455555442 33 5556665554 45566788888999999999999999
Q ss_pred HHHHHHHHhCC
Q 005133 657 EMMEKAILADK 667 (713)
Q Consensus 657 ~~l~kal~~~p 667 (713)
++|+.+++...
T Consensus 117 ~Iy~~Gi~~~A 127 (164)
T 2wvi_A 117 AIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99999998753
No 319
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=23.58 E-value=1.1e+03 Score=28.86 Aligned_cols=80 Identities=11% Similarity=0.016 Sum_probs=49.1
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 005133 622 EHHFRMAFQI-SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (713)
Q Consensus 622 ~~~l~kal~~-~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 700 (713)
.+.|.+.++. ++.+..+.....+-....++|..|++++.++++..| ..+.+..++.++..+|--.-+.-.=+-+.-..
T Consensus 1269 ~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~-~~~~~~~~~~~~~~l~w~h~~~~~~~~~~~~~ 1347 (1354)
T 3lxu_X 1269 NELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKR-TRDHFVELAAINGALGHEHIRTVINRMMITAF 1347 (1354)
T ss_dssp HHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHcCCHHHHHHHHhhhhhhC
Confidence 3344444433 344544444444445578999999999999998877 56777888888888875444432222233344
Q ss_pred CC
Q 005133 701 PR 702 (713)
Q Consensus 701 P~ 702 (713)
|.
T Consensus 1348 p~ 1349 (1354)
T 3lxu_X 1348 PS 1349 (1354)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.26 E-value=3.4e+02 Score=25.75 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHH
Q 005133 519 LSYLAQELITTDRLAP---------QSWCAMGNCYSLQKDHETALKNFQRAVQL--NPRFAYGHTLCGHEYVALEDFENG 587 (713)
Q Consensus 519 A~~~~~kal~~~p~~~---------~~~~~la~~~~~~g~~~~Al~~~~kal~~--~p~~~~a~~~lg~~~~~~g~~eeA 587 (713)
...++++++....++. .+|..++.. .+.+..+|..+... .-..+..|...|..+...|++.+|
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A 169 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKA 169 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHH
Confidence 5667777777665433 334444432 23555666665544 445567777788888888888888
Q ss_pred HHHHHHHHHhCCC
Q 005133 588 IRSYQSALRVDAR 600 (713)
Q Consensus 588 l~~~~~al~~~p~ 600 (713)
..+|+.+++..-.
T Consensus 170 ~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 170 DEVYQKGKRMKAK 182 (223)
T ss_dssp HHHHHHHHHHTCB
T ss_pred HHHHHHHHHcCCc
Confidence 8888888876544
No 321
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=23.14 E-value=1.3e+02 Score=33.78 Aligned_cols=48 Identities=15% Similarity=0.078 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 005133 468 VLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (713)
Q Consensus 468 ~~~~lg~~~~~~g~~~eA~~~~~kal~~~p~~~~a~~~la~~l~~~g~ 515 (713)
.....|+..+..|+|.-|.+....++..+|++.++...++.+|.++|.
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 345566777777788888888888777778777777777777766654
No 322
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=23.01 E-value=2.2e+02 Score=22.93 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=34.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005133 608 LGMVYLRQEKFEFSEHHFRMAFQISPHSSV------IMSYLGTAMHALKRSGEAIEMMEKAIL 664 (713)
Q Consensus 608 lg~~y~~~g~~~eA~~~l~kal~~~p~~~~------~~~~la~~~~~~g~~eeAl~~l~kal~ 664 (713)
.|..++..|+|-+|-+.++.+....|.... +....|..+...|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 455666778888888888888777644211 222334444456776 7777877776
No 323
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=22.18 E-value=2.8e+02 Score=21.63 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHH
Q 005133 432 LLRILGEGYRMSCMYRCKDALDVYL 456 (713)
Q Consensus 432 ll~~l~~a~~l~~~g~~~eAi~~l~ 456 (713)
....+.+|...-..|+|++|+.+|.
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~ 35 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYK 35 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3444555555556666666665543
No 324
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.89 E-value=3.4e+02 Score=28.05 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005133 537 WCAMGNCYSLQKDHETALKNFQRAV 561 (713)
Q Consensus 537 ~~~la~~~~~~g~~~~Al~~~~kal 561 (713)
...++..|...++.++|..+++++-
T Consensus 130 ~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 130 DSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445555555666666666555554
No 325
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=21.87 E-value=1.1e+02 Score=33.20 Aligned_cols=56 Identities=13% Similarity=0.035 Sum_probs=39.9
Q ss_pred CChhHHHHhhCCC-CCCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHhhhCCc
Q 005133 78 DLLSEAEAALSPV-NEPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPL 133 (713)
Q Consensus 78 ~~~~ea~~~L~~~-~~~~~~~p~~a~~~~llg~~~~~~~~~~~A~~~y~~Al~~~p~ 133 (713)
.+.++|+..|-.. ......-++..+++-|||++|.-+++.++|+.+.++++...++
T Consensus 179 ~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~~l 235 (495)
T 3lew_A 179 NDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKDNY 235 (495)
T ss_dssp HHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4456777777321 1111122456789999999999999999999999999976443
No 326
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.67 E-value=72 Score=25.00 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005133 470 SQVGKAYFEVVDYLEAERAFTLARRA 495 (713)
Q Consensus 470 ~~lg~~~~~~g~~~eA~~~~~kal~~ 495 (713)
..+|+-|...|+|+.|+.+|+.+++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 35666666667777777777666653
No 327
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.33 E-value=3.6e+02 Score=28.26 Aligned_cols=66 Identities=9% Similarity=-0.069 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 600 RHYNSWYGLGMVYLRQEK--FEFSEHHFRMAFQI-----SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 600 ~~~~~~~~lg~~y~~~g~--~~eA~~~l~kal~~-----~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
..+.++-+||.+-...-- -..++.+|.+++.. ...+..-|..+|-.+++.+++.+|+..+-.+-..
T Consensus 275 rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 275 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp TCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 345666666665443221 11356666666653 2334455666666777777777777766665544
No 328
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=20.94 E-value=5.8e+02 Score=26.75 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 620 FSEHHFRMAFQI-----SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 620 eA~~~l~kal~~-----~p~~~~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
.++.+|++|+.. ......-|.++|-.+++.+++.+|+..+..+-..
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 332 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhh
Confidence 456677777653 3344566777888888888888888888877665
No 329
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=20.90 E-value=93 Score=24.89 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcC--cccCCCCHHHH-HHHHHH
Q 005133 431 GLLRILGEGYRMSCMYRCKDALDVYLKL--PHKHYNTGWVL-SQVGKA 475 (713)
Q Consensus 431 ~ll~~l~~a~~l~~~g~~~eAi~~l~~~--~~~~~~~~~~~-~~lg~~ 475 (713)
.+...+.+|..+++.++|.+|..+|+++ +...|....++ +.++.|
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec 99 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEEC 99 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHH
No 330
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.67 E-value=3.7e+02 Score=27.77 Aligned_cols=91 Identities=5% Similarity=-0.111 Sum_probs=50.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C--
Q 005133 575 GHEYVALEDFENGIRSYQSALRVD-----------------ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI---S-- 632 (713)
Q Consensus 575 g~~~~~~g~~eeAl~~~~~al~~~-----------------p~~~~~~~~lg~~y~~~g~~~eA~~~l~kal~~---~-- 632 (713)
..+.....+.++|++.+++..... .....+...++..|...|+.++|..+++++-.. .
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344555667777877777653221 001234556677777777777777777776432 1
Q ss_pred CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005133 633 PH---SSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (713)
Q Consensus 633 p~---~~~~~~~la~~~~~~g~~eeAl~~l~kal~~ 665 (713)
.+ ....+...+..|...+++..+....-..+..
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 11 1223444555555666666655555444444
No 331
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.61 E-value=80 Score=24.74 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=13.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 005133 641 YLGTAMHALKRSGEAIEMMEKAI 663 (713)
Q Consensus 641 ~la~~~~~~g~~eeAl~~l~kal 663 (713)
.+|+=|...|+|+.|+.+|+.++
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHH
Confidence 35555555566666666665544
Done!