Query 005134
Match_columns 712
No_of_seqs 373 out of 2690
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 18:36:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06126 hypothetical protein; 100.0 1.3E-81 2.9E-86 719.7 56.3 534 39-696 3-544 (545)
2 PRK08132 FAD-dependent oxidore 100.0 2.8E-65 6.1E-70 584.6 54.4 522 42-700 22-546 (547)
3 PRK06184 hypothetical protein; 100.0 1.7E-63 3.6E-68 564.5 51.0 489 42-698 2-494 (502)
4 PRK08244 hypothetical protein; 100.0 8.3E-61 1.8E-65 541.5 48.7 488 43-700 2-491 (493)
5 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.9E-55 4.1E-60 502.2 54.7 523 41-699 8-532 (538)
6 PRK07190 hypothetical protein; 100.0 3.3E-55 7.1E-60 491.2 48.3 341 39-427 1-343 (487)
7 PRK08294 phenol 2-monooxygenas 100.0 1.4E-53 3E-58 491.1 56.3 551 41-699 30-631 (634)
8 PRK06834 hypothetical protein; 100.0 1.9E-54 4.1E-59 485.6 44.3 332 42-428 2-334 (488)
9 PF01494 FAD_binding_3: FAD bi 100.0 1.1E-44 2.4E-49 392.1 29.3 350 43-423 1-355 (356)
10 COG0654 UbiH 2-polyprenyl-6-me 100.0 3.2E-42 7E-47 377.8 34.8 341 43-428 2-347 (387)
11 PRK08013 oxidoreductase; Provi 100.0 5.2E-42 1.1E-46 378.1 31.8 341 42-429 2-355 (400)
12 PRK08243 4-hydroxybenzoate 3-m 100.0 2.3E-40 5E-45 364.2 35.6 339 43-431 2-350 (392)
13 TIGR01989 COQ6 Ubiquinone bios 100.0 2.2E-40 4.8E-45 368.9 33.5 343 44-430 1-407 (437)
14 PRK08850 2-octaprenyl-6-methox 100.0 1.8E-40 3.9E-45 366.6 31.7 342 42-429 3-355 (405)
15 PRK07045 putative monooxygenas 100.0 1.1E-39 2.4E-44 358.5 35.3 347 40-429 2-356 (388)
16 PRK06617 2-octaprenyl-6-methox 100.0 1.7E-39 3.7E-44 354.9 34.3 331 44-431 2-338 (374)
17 PRK08849 2-octaprenyl-3-methyl 100.0 1.2E-39 2.7E-44 357.4 33.2 335 43-427 3-345 (384)
18 PRK07364 2-octaprenyl-6-methox 100.0 2.8E-39 6E-44 358.6 34.6 347 42-431 17-369 (415)
19 PRK05714 2-octaprenyl-3-methyl 100.0 3E-39 6.6E-44 357.0 32.3 343 43-431 2-360 (405)
20 PRK07494 2-octaprenyl-6-methox 100.0 4.4E-39 9.4E-44 353.8 31.0 341 39-425 3-346 (388)
21 PRK07333 2-octaprenyl-6-methox 100.0 1.1E-38 2.4E-43 352.4 33.1 341 44-429 2-353 (403)
22 PRK08773 2-octaprenyl-3-methyl 100.0 1.7E-38 3.7E-43 349.5 33.1 335 41-422 4-348 (392)
23 TIGR01984 UbiH 2-polyprenyl-6- 100.0 2.5E-38 5.4E-43 347.1 31.0 339 45-431 1-348 (382)
24 PRK06996 hypothetical protein; 100.0 5.8E-38 1.3E-42 345.7 33.3 343 39-431 7-360 (398)
25 PRK08020 ubiF 2-octaprenyl-3-m 100.0 9.8E-38 2.1E-42 343.5 33.7 336 40-425 2-350 (391)
26 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 3.9E-37 8.5E-42 337.8 34.6 338 43-431 2-350 (390)
27 PRK07588 hypothetical protein; 100.0 4.9E-37 1.1E-41 337.8 35.3 336 44-426 1-344 (391)
28 PRK07608 ubiquinone biosynthes 100.0 2.2E-37 4.8E-42 340.3 31.9 341 42-431 4-354 (388)
29 PRK06475 salicylate hydroxylas 100.0 1.7E-37 3.6E-42 342.4 31.0 340 44-425 3-354 (400)
30 TIGR01988 Ubi-OHases Ubiquinon 100.0 3E-37 6.6E-42 338.7 32.8 340 45-431 1-351 (385)
31 PRK09126 hypothetical protein; 100.0 1.5E-37 3.2E-42 342.2 30.2 340 42-429 2-353 (392)
32 PRK06185 hypothetical protein; 100.0 1.2E-36 2.7E-41 336.5 35.5 345 40-429 3-355 (407)
33 PRK05732 2-octaprenyl-6-methox 100.0 6.8E-37 1.5E-41 337.2 31.2 344 41-431 1-357 (395)
34 PRK07538 hypothetical protein; 100.0 2.2E-36 4.8E-41 334.8 35.3 342 44-426 1-361 (413)
35 PRK06753 hypothetical protein; 100.0 2.5E-36 5.5E-41 330.1 31.4 328 44-429 1-336 (373)
36 PRK08163 salicylate hydroxylas 100.0 7.5E-36 1.6E-40 329.1 32.5 342 42-430 3-355 (396)
37 PRK05868 hypothetical protein; 100.0 1.5E-35 3.2E-40 323.1 34.1 335 44-424 2-345 (372)
38 PRK06847 hypothetical protein; 100.0 4.7E-35 1E-39 320.3 36.4 336 43-430 4-350 (375)
39 PRK07236 hypothetical protein; 100.0 5E-35 1.1E-39 321.2 30.5 335 41-429 4-373 (386)
40 TIGR03219 salicylate_mono sali 100.0 4E-35 8.8E-40 325.0 28.0 345 44-430 1-372 (414)
41 PLN02927 antheraxanthin epoxid 100.0 4.5E-33 9.8E-38 315.9 33.7 352 41-437 79-452 (668)
42 PLN02985 squalene monooxygenas 100.0 7.5E-33 1.6E-37 311.7 31.4 344 40-431 40-401 (514)
43 KOG2614 Kynurenine 3-monooxyge 100.0 3.9E-33 8.5E-38 289.8 21.7 320 43-410 2-337 (420)
44 PTZ00367 squalene epoxidase; P 100.0 2.1E-31 4.6E-36 301.3 34.7 342 42-431 32-421 (567)
45 PLN00093 geranylgeranyl diphos 100.0 3.2E-27 6.8E-32 262.2 37.3 329 31-417 27-370 (450)
46 PRK08255 salicylyl-CoA 5-hydro 100.0 1.2E-28 2.7E-33 290.6 27.2 327 44-441 1-349 (765)
47 TIGR02032 GG-red-SF geranylger 100.0 8.6E-28 1.9E-32 253.5 30.3 291 44-393 1-295 (295)
48 TIGR02023 BchP-ChlP geranylger 100.0 7.2E-27 1.6E-31 256.6 36.2 318 44-421 1-325 (388)
49 PRK11445 putative oxidoreducta 99.9 1.6E-26 3.4E-31 250.4 24.8 308 44-417 2-317 (351)
50 TIGR02028 ChlP geranylgeranyl 99.9 5.1E-25 1.1E-29 242.2 36.4 315 44-415 1-329 (398)
51 COG0644 FixC Dehydrogenases (f 99.9 5E-23 1.1E-27 226.5 33.0 319 42-422 2-330 (396)
52 KOG3855 Monooxygenase involved 99.9 1.2E-23 2.5E-28 217.2 21.7 354 22-417 14-431 (481)
53 TIGR01790 carotene-cycl lycope 99.9 5.2E-21 1.1E-25 210.4 37.5 305 45-418 1-320 (388)
54 PRK10015 oxidoreductase; Provi 99.9 7.1E-22 1.5E-26 219.0 30.8 330 41-415 3-354 (429)
55 PRK10157 putative oxidoreducta 99.9 1.8E-20 3.9E-25 208.0 33.2 331 41-416 3-355 (428)
56 PLN02697 lycopene epsilon cycl 99.9 3.1E-19 6.7E-24 200.3 36.8 314 41-418 106-441 (529)
57 TIGR01789 lycopene_cycl lycope 99.9 9.9E-20 2.1E-24 197.9 26.1 298 45-418 1-308 (370)
58 PLN02463 lycopene beta cyclase 99.8 1.8E-18 3.9E-23 191.4 30.5 296 41-400 26-335 (447)
59 KOG1298 Squalene monooxygenase 99.8 8.3E-19 1.8E-23 179.4 23.5 350 31-431 33-401 (509)
60 PF04820 Trp_halogenase: Trypt 99.8 1.3E-17 2.8E-22 185.7 27.9 333 45-429 1-383 (454)
61 PF05834 Lycopene_cycl: Lycope 99.8 3.5E-16 7.6E-21 170.8 28.9 281 45-395 1-290 (374)
62 PRK04176 ribulose-1,5-biphosph 99.4 4.6E-12 1E-16 130.6 12.9 144 41-243 23-179 (257)
63 PF08491 SE: Squalene epoxidas 99.3 6.2E-11 1.3E-15 120.2 16.0 189 226-431 2-205 (276)
64 TIGR00292 thiazole biosynthesi 99.3 2.7E-11 5.9E-16 124.5 13.3 143 42-243 20-176 (254)
65 TIGR01377 soxA_mon sarcosine o 99.2 2E-09 4.2E-14 118.1 21.3 71 151-248 141-212 (380)
66 COG2081 Predicted flavoprotein 99.1 2.3E-10 4.9E-15 120.3 9.7 161 41-238 1-168 (408)
67 TIGR01320 mal_quin_oxido malat 99.1 4.7E-09 1E-13 118.1 20.1 119 151-293 174-295 (483)
68 PRK12266 glpD glycerol-3-phosp 99.1 4.4E-08 9.6E-13 111.4 27.5 73 152-245 152-226 (508)
69 PRK13369 glycerol-3-phosphate 99.1 4.7E-09 1E-13 119.3 18.2 73 151-245 151-225 (502)
70 COG1635 THI4 Ribulose 1,5-bisp 99.0 2.4E-09 5.3E-14 103.2 12.4 142 42-242 29-183 (262)
71 PRK11728 hydroxyglutarate oxid 99.0 5E-09 1.1E-13 115.6 16.5 69 151-246 145-214 (393)
72 PF01946 Thi4: Thi4 family; PD 99.0 8.6E-09 1.9E-13 100.3 15.0 143 41-242 15-170 (230)
73 PRK12409 D-amino acid dehydrog 99.0 5.1E-08 1.1E-12 108.1 23.2 70 155-245 197-267 (410)
74 PF03486 HI0933_like: HI0933-l 99.0 3.6E-09 7.8E-14 115.9 13.6 141 44-238 1-167 (409)
75 PRK11259 solA N-methyltryptoph 99.0 5E-09 1.1E-13 114.7 14.4 36 42-77 2-37 (376)
76 PF01266 DAO: FAD dependent ox 99.0 6.1E-09 1.3E-13 112.6 14.1 68 151-245 143-212 (358)
77 TIGR01373 soxB sarcosine oxida 99.0 8.7E-08 1.9E-12 106.2 22.8 36 41-76 28-65 (407)
78 COG0579 Predicted dehydrogenas 98.9 1.2E-08 2.7E-13 110.8 15.4 181 42-247 2-222 (429)
79 PRK05257 malate:quinone oxidor 98.9 1.7E-08 3.7E-13 113.7 16.1 76 151-246 179-256 (494)
80 PLN02172 flavin-containing mon 98.9 2.8E-08 6.1E-13 111.1 16.6 165 42-238 9-174 (461)
81 PF12831 FAD_oxidored: FAD dep 98.9 1.8E-09 3.8E-14 120.2 6.3 154 45-247 1-159 (428)
82 PF13738 Pyr_redox_3: Pyridine 98.9 9.6E-09 2.1E-13 102.1 10.9 138 47-238 1-139 (203)
83 PRK07233 hypothetical protein; 98.9 3.6E-07 7.8E-12 102.0 23.8 59 45-104 1-74 (434)
84 PRK13339 malate:quinone oxidor 98.9 7.7E-08 1.7E-12 107.8 18.0 77 150-247 179-258 (497)
85 PRK00711 D-amino acid dehydrog 98.9 3.5E-07 7.7E-12 101.6 23.3 34 44-77 1-34 (416)
86 KOG2415 Electron transfer flav 98.8 2.5E-07 5.4E-12 96.8 19.3 168 41-243 74-262 (621)
87 PRK12416 protoporphyrinogen ox 98.8 3.6E-07 7.7E-12 103.1 22.5 60 45-105 3-83 (463)
88 PTZ00383 malate:quinone oxidor 98.8 4.5E-08 9.8E-13 110.0 14.8 70 151-245 207-282 (497)
89 PRK05192 tRNA uridine 5-carbox 98.8 8.1E-08 1.8E-12 108.7 16.5 150 41-237 2-157 (618)
90 COG0578 GlpA Glycerol-3-phosph 98.8 8.3E-07 1.8E-11 98.6 23.9 185 41-246 10-235 (532)
91 PRK11101 glpA sn-glycerol-3-ph 98.8 9E-08 2E-12 109.8 16.7 74 151-245 145-220 (546)
92 PLN02464 glycerol-3-phosphate 98.8 6E-07 1.3E-11 104.3 23.3 73 151-244 228-304 (627)
93 PRK01747 mnmC bifunctional tRN 98.8 5.8E-08 1.2E-12 114.2 14.3 35 43-77 260-294 (662)
94 PRK06481 fumarate reductase fl 98.8 3.4E-07 7.3E-12 104.2 19.4 38 41-78 59-96 (506)
95 PLN02612 phytoene desaturase 98.7 7.5E-06 1.6E-10 94.4 29.8 65 41-106 91-171 (567)
96 TIGR01292 TRX_reduct thioredox 98.7 1.1E-07 2.5E-12 100.4 12.9 112 44-237 1-112 (300)
97 TIGR00275 flavoprotein, HI0933 98.7 4.8E-08 1.1E-12 107.7 10.3 149 47-237 1-160 (400)
98 PRK11883 protoporphyrinogen ox 98.7 3.2E-06 6.9E-11 95.0 25.0 59 45-104 2-77 (451)
99 PLN02661 Putative thiazole syn 98.7 3.3E-07 7.2E-12 97.1 15.8 38 41-78 90-128 (357)
100 PRK08274 tricarballylate dehyd 98.7 9.4E-08 2E-12 107.9 12.3 37 41-77 2-38 (466)
101 PRK07121 hypothetical protein; 98.7 2.1E-07 4.6E-12 105.7 13.5 38 41-78 18-55 (492)
102 PRK07804 L-aspartate oxidase; 98.6 1.3E-06 2.8E-11 100.2 19.4 38 41-78 14-51 (541)
103 PRK15317 alkyl hydroperoxide r 98.6 2.6E-07 5.7E-12 105.5 13.1 114 41-237 209-322 (517)
104 TIGR00562 proto_IX_ox protopor 98.6 8.5E-06 1.8E-10 91.9 25.2 61 44-105 3-82 (462)
105 TIGR01812 sdhA_frdA_Gneg succi 98.6 1.3E-06 2.8E-11 101.0 18.3 66 155-241 129-195 (566)
106 COG2072 TrkA Predicted flavopr 98.6 2.8E-07 6.1E-12 102.7 12.3 39 40-78 5-44 (443)
107 TIGR00551 nadB L-aspartate oxi 98.6 1.2E-06 2.6E-11 99.3 17.3 64 155-241 128-193 (488)
108 TIGR01813 flavo_cyto_c flavocy 98.6 2.9E-07 6.2E-12 103.2 11.9 62 155-238 130-193 (439)
109 PRK06854 adenylylsulfate reduc 98.6 8.1E-07 1.8E-11 103.1 15.9 38 41-78 9-48 (608)
110 TIGR03329 Phn_aa_oxid putative 98.6 7.6E-07 1.6E-11 100.3 15.2 36 41-76 22-59 (460)
111 PF00743 FMO-like: Flavin-bind 98.6 3.1E-07 6.7E-12 104.2 12.1 144 44-238 2-151 (531)
112 PLN00128 Succinate dehydrogena 98.6 1.4E-06 3E-11 101.3 17.6 38 41-78 48-85 (635)
113 PRK09231 fumarate reductase fl 98.6 2.1E-06 4.5E-11 99.2 18.6 38 41-78 2-41 (582)
114 TIGR02731 phytoene_desat phyto 98.6 3.5E-05 7.5E-10 86.7 28.0 60 45-105 1-76 (453)
115 KOG2820 FAD-dependent oxidored 98.5 4.6E-06 9.9E-11 85.7 18.1 48 41-88 5-52 (399)
116 TIGR03140 AhpF alkyl hydropero 98.5 5.5E-07 1.2E-11 102.7 13.0 114 41-237 210-323 (515)
117 KOG1399 Flavin-containing mono 98.5 4.5E-07 9.8E-12 99.9 11.8 149 41-237 4-153 (448)
118 PRK06452 sdhA succinate dehydr 98.5 2.9E-06 6.3E-11 97.8 19.0 39 40-78 2-40 (566)
119 PRK07843 3-ketosteroid-delta-1 98.5 1.3E-06 2.8E-11 100.6 15.5 41 38-78 2-42 (557)
120 PLN02268 probable polyamine ox 98.5 3.6E-05 7.8E-10 86.1 26.7 35 44-78 1-35 (435)
121 PLN02576 protoporphyrinogen ox 98.5 5E-05 1.1E-09 86.5 28.0 38 41-78 10-48 (496)
122 PRK06175 L-aspartate oxidase; 98.5 4.6E-06 9.9E-11 93.0 18.4 36 42-78 3-38 (433)
123 PF00890 FAD_binding_2: FAD bi 98.5 3.1E-07 6.8E-12 102.1 9.0 65 153-238 139-204 (417)
124 TIGR03364 HpnW_proposed FAD de 98.5 2.9E-06 6.2E-11 92.6 16.3 34 44-77 1-34 (365)
125 PRK05945 sdhA succinate dehydr 98.5 3.2E-06 6.9E-11 97.8 17.3 36 42-77 2-39 (575)
126 PRK06069 sdhA succinate dehydr 98.5 4.3E-06 9.2E-11 96.8 18.4 40 39-78 1-43 (577)
127 PRK07573 sdhA succinate dehydr 98.5 4E-06 8.7E-11 97.8 18.0 38 41-78 33-70 (640)
128 PRK09078 sdhA succinate dehydr 98.5 6.3E-06 1.4E-10 95.6 19.1 38 40-77 9-46 (598)
129 TIGR01176 fum_red_Fp fumarate 98.5 6.3E-06 1.4E-10 95.1 18.6 37 42-78 2-40 (580)
130 PTZ00139 Succinate dehydrogena 98.4 5.8E-06 1.3E-10 96.1 18.4 38 41-78 27-64 (617)
131 COG0492 TrxB Thioredoxin reduc 98.4 1.6E-06 3.4E-11 91.4 12.4 35 42-76 2-37 (305)
132 PRK05335 tRNA (uracil-5-)-meth 98.4 8.4E-07 1.8E-11 96.4 10.4 115 44-201 3-126 (436)
133 PF01134 GIDA: Glucose inhibit 98.4 2.8E-06 6E-11 91.6 14.2 146 45-237 1-152 (392)
134 PRK08275 putative oxidoreducta 98.4 1.3E-06 2.8E-11 100.6 12.1 37 41-77 7-45 (554)
135 PLN02676 polyamine oxidase 98.4 1.8E-05 4E-10 89.4 21.1 37 42-78 25-62 (487)
136 PRK05249 soluble pyridine nucl 98.4 6.1E-06 1.3E-10 93.1 17.3 39 39-77 1-39 (461)
137 PRK07057 sdhA succinate dehydr 98.4 1.1E-05 2.5E-10 93.3 19.2 37 41-77 10-46 (591)
138 KOG2853 Possible oxidoreductas 98.4 5.5E-05 1.2E-09 77.7 21.2 40 41-80 84-127 (509)
139 PRK06263 sdhA succinate dehydr 98.4 1E-05 2.3E-10 92.9 18.4 36 41-77 5-40 (543)
140 TIGR03143 AhpF_homolog putativ 98.4 3.1E-06 6.7E-11 97.4 13.1 34 43-76 4-37 (555)
141 COG0665 DadA Glycine/D-amino a 98.4 4.7E-05 1E-09 83.6 22.0 38 41-78 2-39 (387)
142 PRK08626 fumarate reductase fl 98.4 1.1E-05 2.5E-10 94.2 17.9 40 39-78 1-40 (657)
143 PRK08641 sdhA succinate dehydr 98.4 1.4E-05 3E-10 92.6 18.4 37 42-78 2-38 (589)
144 PRK08401 L-aspartate oxidase; 98.3 1.2E-05 2.5E-10 90.7 16.7 34 44-77 2-35 (466)
145 PRK07803 sdhA succinate dehydr 98.3 2E-05 4.4E-10 91.8 18.9 38 41-78 6-43 (626)
146 PRK08205 sdhA succinate dehydr 98.3 2.3E-05 5E-10 90.8 19.2 35 42-77 4-38 (583)
147 PRK12837 3-ketosteroid-delta-1 98.3 2.9E-06 6.3E-11 96.7 11.3 36 42-78 6-41 (513)
148 TIGR00136 gidA glucose-inhibit 98.3 1.1E-05 2.3E-10 91.7 15.2 146 44-237 1-154 (617)
149 PF00070 Pyr_redox: Pyridine n 98.3 1E-05 2.2E-10 67.7 11.4 34 45-78 1-34 (80)
150 PRK08958 sdhA succinate dehydr 98.3 2.7E-05 5.9E-10 90.1 18.7 38 41-78 5-42 (588)
151 PRK09077 L-aspartate oxidase; 98.3 2.7E-05 5.8E-10 89.4 18.3 37 41-78 6-42 (536)
152 PRK06134 putative FAD-binding 98.3 7E-06 1.5E-10 95.0 13.5 38 41-78 10-47 (581)
153 COG3380 Predicted NAD/FAD-depe 98.3 4.5E-06 9.7E-11 83.4 10.1 34 45-78 3-36 (331)
154 PRK08071 L-aspartate oxidase; 98.3 1.8E-05 3.9E-10 90.2 16.6 35 43-78 3-37 (510)
155 PLN02328 lysine-specific histo 98.3 0.00013 2.9E-09 85.8 23.9 38 41-78 236-273 (808)
156 PRK12842 putative succinate de 98.3 5.4E-06 1.2E-10 95.9 12.3 38 41-78 7-44 (574)
157 PF07992 Pyr_redox_2: Pyridine 98.3 2.2E-06 4.7E-11 84.9 7.7 33 45-77 1-33 (201)
158 PRK09897 hypothetical protein; 98.2 5.8E-06 1.3E-10 93.7 11.5 35 44-78 2-38 (534)
159 PLN02815 L-aspartate oxidase 98.2 2.8E-05 6E-10 89.8 17.2 37 41-78 27-63 (594)
160 PF13450 NAD_binding_8: NAD(P) 98.2 1.3E-06 2.7E-11 70.6 4.1 31 48-78 1-31 (68)
161 PRK10262 thioredoxin reductase 98.2 2E-05 4.4E-10 84.4 14.7 35 41-75 4-38 (321)
162 COG1232 HemY Protoporphyrinoge 98.2 2.8E-05 6.1E-10 85.5 15.9 63 44-107 1-80 (444)
163 PF06039 Mqo: Malate:quinone o 98.2 2.5E-05 5.4E-10 84.5 14.9 74 152-246 178-254 (488)
164 PLN02568 polyamine oxidase 98.2 1.8E-05 3.9E-10 90.3 14.6 39 40-78 2-45 (539)
165 PRK12844 3-ketosteroid-delta-1 98.2 9.4E-06 2E-10 93.4 12.4 37 42-78 5-41 (557)
166 COG1231 Monoamine oxidase [Ami 98.2 2E-05 4.2E-10 85.0 13.8 38 41-78 5-42 (450)
167 PRK06116 glutathione reductase 98.2 3.5E-05 7.6E-10 86.6 16.2 34 42-75 3-36 (450)
168 PRK06370 mercuric reductase; V 98.1 3.5E-05 7.5E-10 87.0 15.5 36 41-76 3-38 (463)
169 TIGR01424 gluta_reduc_2 glutat 98.1 1.8E-05 3.9E-10 88.9 12.5 33 43-75 2-34 (446)
170 PRK06467 dihydrolipoamide dehy 98.1 3.4E-05 7.4E-10 87.1 14.8 35 42-76 3-37 (471)
171 PRK07395 L-aspartate oxidase; 98.1 4.2E-05 9.1E-10 87.8 15.4 37 41-78 7-43 (553)
172 PRK14694 putative mercuric red 98.1 4.1E-05 8.8E-10 86.5 14.9 38 39-76 2-39 (468)
173 TIGR01421 gluta_reduc_1 glutat 98.1 3.2E-05 7E-10 86.8 13.9 33 43-75 2-34 (450)
174 PRK06416 dihydrolipoamide dehy 98.1 5.4E-05 1.2E-09 85.4 15.5 35 42-76 3-37 (462)
175 TIGR01811 sdhA_Bsu succinate d 98.1 6.9E-05 1.5E-09 87.0 16.7 31 46-76 1-31 (603)
176 KOG3855 Monooxygenase involved 98.1 3.1E-07 6.7E-12 96.5 -2.5 181 344-578 232-416 (481)
177 PRK05976 dihydrolipoamide dehy 98.1 5.8E-05 1.3E-09 85.4 15.2 34 42-75 3-36 (472)
178 PRK12843 putative FAD-binding 98.1 2.9E-05 6.3E-10 89.9 12.8 38 41-78 14-51 (578)
179 PRK05329 anaerobic glycerol-3- 98.0 0.00019 4.1E-09 79.2 18.2 34 43-76 2-35 (422)
180 KOG1335 Dihydrolipoamide dehyd 98.0 6.1E-05 1.3E-09 78.7 13.3 57 189-248 267-324 (506)
181 TIGR02462 pyranose_ox pyranose 98.0 0.00013 2.8E-09 82.7 16.9 55 44-98 1-61 (544)
182 PRK12839 hypothetical protein; 98.0 2.4E-05 5.3E-10 90.1 11.2 38 41-78 6-43 (572)
183 PLN03000 amine oxidase 98.0 0.00073 1.6E-08 79.8 23.3 37 42-78 183-219 (881)
184 PTZ00058 glutathione reductase 98.0 2.2E-05 4.7E-10 90.0 10.5 38 38-75 43-80 (561)
185 PLN02507 glutathione reductase 98.0 5E-05 1.1E-09 86.3 13.3 35 41-75 23-57 (499)
186 PRK12835 3-ketosteroid-delta-1 98.0 9.6E-05 2.1E-09 85.5 15.8 38 41-78 9-46 (584)
187 PF13434 K_oxygenase: L-lysine 98.0 3.9E-05 8.4E-10 82.6 11.7 150 43-236 2-158 (341)
188 PRK07251 pyridine nucleotide-d 98.0 4.7E-05 1E-09 85.3 12.9 36 42-77 2-37 (438)
189 PRK13977 myosin-cross-reactive 98.0 0.00017 3.6E-09 81.4 16.9 38 41-78 20-61 (576)
190 PRK07512 L-aspartate oxidase; 98.0 8.3E-05 1.8E-09 84.8 14.7 35 41-77 7-41 (513)
191 PRK06115 dihydrolipoamide dehy 98.0 8.9E-05 1.9E-09 83.7 14.6 35 42-76 2-36 (466)
192 TIGR02485 CobZ_N-term precorri 98.0 4.5E-05 9.8E-10 85.2 11.8 64 155-241 123-187 (432)
193 PRK12834 putative FAD-binding 97.9 0.00015 3.2E-09 83.7 15.8 35 42-76 3-37 (549)
194 PRK12845 3-ketosteroid-delta-1 97.9 0.00018 3.9E-09 82.8 16.3 37 41-78 14-50 (564)
195 PRK06327 dihydrolipoamide dehy 97.9 9.8E-05 2.1E-09 83.6 14.0 33 42-74 3-35 (475)
196 TIGR02061 aprA adenosine phosp 97.9 5.9E-05 1.3E-09 87.2 11.9 34 45-78 1-38 (614)
197 COG1233 Phytoene dehydrogenase 97.9 9E-06 1.9E-10 92.0 4.8 37 42-78 2-38 (487)
198 PRK13748 putative mercuric red 97.9 0.00022 4.7E-09 82.6 16.0 34 42-75 97-130 (561)
199 PRK09564 coenzyme A disulfide 97.9 9.2E-05 2E-09 83.1 11.7 34 45-78 2-37 (444)
200 PRK04965 NADH:flavorubredoxin 97.8 0.00018 3.9E-09 78.9 13.5 99 44-238 142-240 (377)
201 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 8.5E-05 1.9E-09 81.5 10.7 35 44-78 1-35 (433)
202 PRK14727 putative mercuric red 97.8 0.00018 3.8E-09 81.6 13.6 43 35-77 8-50 (479)
203 TIGR01350 lipoamide_DH dihydro 97.8 0.00014 3E-09 82.0 12.7 31 44-74 2-32 (461)
204 KOG0042 Glycerol-3-phosphate d 97.8 0.00014 3E-09 79.2 11.8 40 40-79 64-103 (680)
205 TIGR01372 soxA sarcosine oxida 97.8 0.00049 1.1E-08 84.6 17.9 37 42-78 162-198 (985)
206 KOG2665 Predicted FAD-dependen 97.8 0.0001 2.2E-09 75.2 9.4 54 26-80 32-87 (453)
207 PTZ00052 thioredoxin reductase 97.8 8.3E-05 1.8E-09 84.6 9.9 33 43-75 5-37 (499)
208 PRK13512 coenzyme A disulfide 97.8 0.00015 3.3E-09 81.2 11.8 35 45-79 3-39 (438)
209 KOG2844 Dimethylglycine dehydr 97.8 0.00036 7.7E-09 77.8 13.7 200 17-244 13-251 (856)
210 PTZ00306 NADH-dependent fumara 97.8 0.00049 1.1E-08 85.8 16.9 38 41-78 407-444 (1167)
211 PRK06115 dihydrolipoamide dehy 97.7 0.00037 8E-09 78.7 13.6 103 43-237 174-276 (466)
212 TIGR01350 lipoamide_DH dihydro 97.7 0.00041 9E-09 78.2 13.4 101 43-238 170-270 (461)
213 PRK07208 hypothetical protein; 97.7 4.5E-05 9.7E-10 86.5 5.5 38 41-78 2-39 (479)
214 PRK08010 pyridine nucleotide-d 97.7 4.3E-05 9.4E-10 85.7 5.2 35 42-76 2-36 (441)
215 PRK13800 putative oxidoreducta 97.7 0.00016 3.4E-09 88.0 10.3 37 41-77 11-47 (897)
216 PLN02852 ferredoxin-NADP+ redu 97.6 6.8E-05 1.5E-09 84.1 6.3 38 41-78 24-63 (491)
217 PF13454 NAD_binding_9: FAD-NA 97.6 0.00026 5.6E-09 67.4 9.4 31 47-77 1-36 (156)
218 COG1053 SdhA Succinate dehydro 97.6 0.00073 1.6E-08 77.2 14.4 40 40-79 3-42 (562)
219 PRK06416 dihydrolipoamide dehy 97.6 0.00055 1.2E-08 77.2 13.4 100 44-237 173-272 (462)
220 PTZ00318 NADH dehydrogenase-li 97.6 0.00049 1.1E-08 76.7 12.7 39 40-78 7-45 (424)
221 PRK06912 acoL dihydrolipoamide 97.6 0.0011 2.3E-08 74.8 15.6 32 45-76 2-33 (458)
222 COG1249 Lpd Pyruvate/2-oxoglut 97.6 0.00075 1.6E-08 75.0 13.7 112 42-249 172-283 (454)
223 PRK07845 flavoprotein disulfid 97.6 0.00065 1.4E-08 76.7 13.2 33 44-76 2-34 (466)
224 COG0029 NadB Aspartate oxidase 97.6 0.00085 1.9E-08 73.1 13.3 157 45-239 9-198 (518)
225 PLN02487 zeta-carotene desatur 97.6 0.00013 2.7E-09 83.7 7.4 64 42-106 74-153 (569)
226 TIGR01438 TGR thioredoxin and 97.6 0.00065 1.4E-08 77.0 13.2 33 43-75 2-34 (484)
227 PRK09754 phenylpropionate diox 97.6 0.00032 7E-09 77.5 10.3 36 43-78 3-40 (396)
228 TIGR02733 desat_CrtD C-3',4' d 97.6 7E-05 1.5E-09 85.2 5.1 35 44-78 2-36 (492)
229 PRK09754 phenylpropionate diox 97.6 0.00068 1.5E-08 74.9 12.8 34 44-77 145-178 (396)
230 KOG0029 Amine oxidase [Seconda 97.5 8.5E-05 1.8E-09 83.6 5.3 38 41-78 13-50 (501)
231 TIGR02730 carot_isom carotene 97.5 8.5E-05 1.8E-09 84.5 5.2 35 44-78 1-35 (493)
232 TIGR02732 zeta_caro_desat caro 97.5 0.00011 2.3E-09 83.1 5.9 61 45-106 1-77 (474)
233 PRK07818 dihydrolipoamide dehy 97.5 0.0013 2.8E-08 74.3 14.6 101 44-237 173-273 (466)
234 PRK06327 dihydrolipoamide dehy 97.5 0.001 2.2E-08 75.3 13.8 102 44-238 184-285 (475)
235 TIGR02053 MerA mercuric reduct 97.5 0.0011 2.5E-08 74.7 14.0 100 44-237 167-266 (463)
236 PRK06370 mercuric reductase; V 97.5 0.00097 2.1E-08 75.3 13.3 100 44-237 172-271 (463)
237 PRK06912 acoL dihydrolipoamide 97.5 0.0012 2.5E-08 74.5 13.2 35 43-77 170-204 (458)
238 COG3349 Uncharacterized conser 97.4 0.00012 2.7E-09 80.4 4.7 35 44-78 1-35 (485)
239 PRK06292 dihydrolipoamide dehy 97.4 0.00012 2.6E-09 82.6 4.8 34 42-75 2-35 (460)
240 TIGR02734 crtI_fam phytoene de 97.4 0.00011 2.5E-09 83.7 4.5 33 46-78 1-33 (502)
241 PTZ00188 adrenodoxin reductase 97.4 0.00019 4.1E-09 79.6 5.9 36 43-78 39-75 (506)
242 PRK07818 dihydrolipoamide dehy 97.4 0.00014 3E-09 82.2 5.1 34 42-75 3-36 (466)
243 COG3075 GlpB Anaerobic glycero 97.4 0.00015 3.3E-09 74.5 4.7 51 42-98 1-51 (421)
244 COG1148 HdrA Heterodisulfide r 97.4 0.00015 3.4E-09 77.9 4.8 37 42-78 123-159 (622)
245 PRK06467 dihydrolipoamide dehy 97.4 0.0014 3E-08 74.2 12.7 34 44-77 175-208 (471)
246 TIGR00031 UDP-GALP_mutase UDP- 97.4 0.00018 3.8E-09 78.2 5.0 35 44-78 2-36 (377)
247 KOG2852 Possible oxidoreductas 97.4 0.0014 3E-08 66.4 10.8 167 44-238 11-209 (380)
248 TIGR03315 Se_ygfK putative sel 97.4 0.00018 3.9E-09 86.7 5.3 37 42-78 536-572 (1012)
249 PRK07251 pyridine nucleotide-d 97.3 0.0015 3.3E-08 73.2 12.2 35 43-77 157-191 (438)
250 COG2509 Uncharacterized FAD-de 97.3 0.0019 4.1E-08 69.7 11.8 67 157-248 175-246 (486)
251 PRK05976 dihydrolipoamide dehy 97.3 0.0022 4.7E-08 72.7 13.2 35 43-77 180-214 (472)
252 TIGR01423 trypano_reduc trypan 97.3 0.0029 6.2E-08 71.7 14.0 34 42-75 2-36 (486)
253 PRK07845 flavoprotein disulfid 97.3 0.0028 6.1E-08 71.5 13.8 99 44-239 178-276 (466)
254 TIGR02053 MerA mercuric reduct 97.3 0.00024 5.1E-09 80.3 5.0 33 44-76 1-33 (463)
255 PF01593 Amino_oxidase: Flavin 97.3 0.0019 4.2E-08 71.2 12.2 46 188-240 223-268 (450)
256 PRK12831 putative oxidoreducta 97.3 0.00028 6.1E-09 79.5 5.2 36 42-77 139-174 (464)
257 PRK12779 putative bifunctional 97.3 0.00023 5.1E-09 86.3 4.8 36 43-78 306-341 (944)
258 TIGR01424 gluta_reduc_2 glutat 97.2 0.0026 5.5E-08 71.5 12.5 97 44-237 167-263 (446)
259 cd02979 PHOX_C FAD-dependent P 97.2 0.0018 3.9E-08 62.2 9.7 122 555-680 1-153 (167)
260 TIGR03169 Nterm_to_SelD pyridi 97.2 0.0015 3.3E-08 71.1 10.4 34 45-78 1-37 (364)
261 PRK07846 mycothione reductase; 97.2 0.0031 6.8E-08 70.8 12.8 35 43-77 166-200 (451)
262 PRK04965 NADH:flavorubredoxin 97.2 0.0024 5.3E-08 70.0 11.7 35 44-78 3-39 (377)
263 TIGR01421 gluta_reduc_1 glutat 97.2 0.0024 5.2E-08 71.7 11.8 35 43-77 166-200 (450)
264 PTZ00363 rab-GDP dissociation 97.2 0.00033 7.3E-09 77.9 4.7 39 41-79 2-40 (443)
265 COG3634 AhpF Alkyl hydroperoxi 97.2 0.00052 1.1E-08 71.0 5.5 112 41-236 209-324 (520)
266 COG0562 Glf UDP-galactopyranos 97.2 0.0004 8.7E-09 71.4 4.7 35 44-78 2-36 (374)
267 KOG2404 Fumarate reductase, fl 97.2 0.002 4.4E-08 66.1 9.5 49 189-239 160-208 (477)
268 PLN02507 glutathione reductase 97.2 0.0025 5.3E-08 72.6 11.6 34 44-77 204-237 (499)
269 TIGR01316 gltA glutamate synth 97.1 0.00048 1E-08 77.3 5.5 38 41-78 131-168 (449)
270 PRK06567 putative bifunctional 97.1 0.00044 9.6E-09 82.1 5.0 35 42-76 382-416 (1028)
271 PRK09853 putative selenate red 97.1 0.0005 1.1E-08 82.6 5.2 36 43-78 539-574 (1019)
272 TIGR03378 glycerol3P_GlpB glyc 97.1 0.00063 1.4E-08 74.4 5.4 49 44-98 1-49 (419)
273 PRK08010 pyridine nucleotide-d 97.1 0.0061 1.3E-07 68.3 13.6 33 44-76 159-191 (441)
274 PRK06292 dihydrolipoamide dehy 97.1 0.0057 1.2E-07 69.0 13.3 34 44-77 170-203 (460)
275 PRK12769 putative oxidoreducta 97.1 0.00054 1.2E-08 80.6 5.2 36 43-78 327-362 (654)
276 PLN02546 glutathione reductase 97.1 0.00073 1.6E-08 77.5 5.9 34 41-74 77-110 (558)
277 KOG1276 Protoporphyrinogen oxi 97.0 0.00072 1.6E-08 72.1 5.1 67 41-108 9-96 (491)
278 PF00732 GMC_oxred_N: GMC oxid 97.0 0.00049 1.1E-08 72.7 4.0 36 44-79 1-37 (296)
279 PTZ00153 lipoamide dehydrogena 97.0 0.00091 2E-08 78.0 6.4 34 42-75 115-148 (659)
280 PRK12810 gltD glutamate syntha 97.0 0.00073 1.6E-08 76.4 5.5 37 42-78 142-178 (471)
281 TIGR03385 CoA_CoA_reduc CoA-di 97.0 0.005 1.1E-07 68.7 12.1 34 44-77 138-171 (427)
282 TIGR03452 mycothione_red mycot 97.0 0.0069 1.5E-07 68.1 13.1 34 44-77 170-203 (452)
283 PRK12775 putative trifunctiona 97.0 0.00066 1.4E-08 83.2 5.1 36 43-78 430-465 (1006)
284 PRK11749 dihydropyrimidine deh 97.0 0.00089 1.9E-08 75.4 5.6 37 42-78 139-175 (457)
285 COG3486 IucD Lysine/ornithine 97.0 0.0029 6.2E-08 67.5 8.9 154 40-237 2-157 (436)
286 TIGR01438 TGR thioredoxin and 97.0 0.012 2.5E-07 66.8 14.5 31 44-74 181-211 (484)
287 PLN02785 Protein HOTHEAD 96.9 0.0014 2.9E-08 75.8 6.8 41 37-78 49-89 (587)
288 COG3573 Predicted oxidoreducta 96.9 0.0013 2.8E-08 67.7 5.7 44 41-84 3-46 (552)
289 PRK14989 nitrite reductase sub 96.9 0.0051 1.1E-07 74.0 11.8 37 43-79 3-43 (847)
290 PRK12778 putative bifunctional 96.9 0.00087 1.9E-08 80.2 5.2 36 42-77 430-465 (752)
291 PRK14694 putative mercuric red 96.9 0.011 2.3E-07 67.0 13.7 32 44-75 179-210 (468)
292 PRK02106 choline dehydrogenase 96.9 0.00096 2.1E-08 77.2 5.3 37 41-77 3-40 (560)
293 TIGR02374 nitri_red_nirB nitri 96.9 0.007 1.5E-07 72.7 12.6 33 44-76 141-173 (785)
294 PF13434 K_oxygenase: L-lysine 96.9 0.012 2.6E-07 63.4 13.2 141 41-235 188-339 (341)
295 PLN02529 lysine-specific histo 96.9 0.0012 2.5E-08 77.6 5.7 37 41-77 158-194 (738)
296 PRK14989 nitrite reductase sub 96.9 0.0075 1.6E-07 72.6 12.6 109 44-246 146-256 (847)
297 PRK07846 mycothione reductase; 96.9 0.008 1.7E-07 67.6 12.0 32 43-76 1-32 (451)
298 TIGR01292 TRX_reduct thioredox 96.9 0.012 2.6E-07 61.9 12.7 33 44-76 142-174 (300)
299 PRK13512 coenzyme A disulfide 96.9 0.0079 1.7E-07 67.4 11.8 34 44-77 149-182 (438)
300 PRK09564 coenzyme A disulfide 96.9 0.0099 2.1E-07 66.7 12.7 33 44-76 150-182 (444)
301 TIGR01423 trypano_reduc trypan 96.9 0.0073 1.6E-07 68.4 11.6 35 43-77 187-224 (486)
302 PTZ00058 glutathione reductase 96.9 0.008 1.7E-07 69.1 12.0 35 43-77 237-271 (561)
303 PRK12814 putative NADPH-depend 96.8 0.0013 2.7E-08 77.4 5.4 36 43-78 193-228 (652)
304 KOG0404 Thioredoxin reductase 96.8 0.0038 8.3E-08 60.9 7.6 35 41-75 6-40 (322)
305 COG0446 HcaD Uncharacterized N 96.8 0.0089 1.9E-07 65.9 11.8 35 44-78 137-171 (415)
306 PTZ00052 thioredoxin reductase 96.8 0.014 3E-07 66.5 13.4 31 44-74 183-213 (499)
307 PRK14727 putative mercuric red 96.8 0.014 3.1E-07 66.1 13.4 32 44-75 189-220 (479)
308 TIGR01318 gltD_gamma_fam gluta 96.8 0.0014 3.1E-08 73.9 5.0 37 42-78 140-176 (467)
309 COG1206 Gid NAD(FAD)-utilizing 96.7 0.0054 1.2E-07 63.3 8.4 105 42-170 2-115 (439)
310 TIGR02374 nitri_red_nirB nitri 96.7 0.0065 1.4E-07 73.0 10.5 33 46-78 1-36 (785)
311 COG1249 Lpd Pyruvate/2-oxoglut 96.7 0.0016 3.5E-08 72.4 4.9 36 41-76 2-37 (454)
312 PRK12770 putative glutamate sy 96.7 0.002 4.4E-08 70.0 5.6 37 42-78 17-53 (352)
313 TIGR03452 mycothione_red mycot 96.7 0.013 2.8E-07 65.9 11.9 32 43-76 2-33 (452)
314 PRK12771 putative glutamate sy 96.7 0.0017 3.7E-08 75.2 4.9 36 43-78 137-172 (564)
315 TIGR03140 AhpF alkyl hydropero 96.7 0.016 3.4E-07 66.4 12.6 33 44-76 353-385 (515)
316 PRK12809 putative oxidoreducta 96.7 0.0019 4.1E-08 75.8 5.2 36 43-78 310-345 (639)
317 COG0493 GltD NADPH-dependent g 96.6 0.0017 3.7E-08 72.3 4.1 35 44-78 124-158 (457)
318 PRK15317 alkyl hydroperoxide r 96.6 0.018 3.8E-07 66.0 12.6 34 44-77 352-385 (517)
319 PRK13748 putative mercuric red 96.6 0.02 4.4E-07 66.3 13.2 32 44-75 271-302 (561)
320 PTZ00153 lipoamide dehydrogena 96.6 0.017 3.8E-07 67.4 12.2 34 44-77 313-346 (659)
321 TIGR01317 GOGAT_sm_gam glutama 96.5 0.0029 6.2E-08 71.8 5.2 36 43-78 143-178 (485)
322 PRK10262 thioredoxin reductase 96.5 0.026 5.5E-07 60.4 12.1 34 44-77 147-180 (321)
323 PTZ00318 NADH dehydrogenase-li 96.3 0.025 5.4E-07 63.1 11.0 32 45-76 175-220 (424)
324 KOG1800 Ferredoxin/adrenodoxin 96.3 0.0037 8E-08 65.8 3.9 49 24-78 7-57 (468)
325 COG4529 Uncharacterized protei 96.3 0.02 4.3E-07 62.8 9.6 34 44-78 2-39 (474)
326 PLN02546 glutathione reductase 96.2 0.04 8.7E-07 63.4 12.5 35 43-77 252-286 (558)
327 PRK13984 putative oxidoreducta 96.2 0.0054 1.2E-07 71.7 5.2 37 42-78 282-318 (604)
328 PLN02976 amine oxidase 96.2 0.0057 1.2E-07 75.1 5.2 37 42-78 692-728 (1713)
329 COG0445 GidA Flavin-dependent 96.1 0.015 3.2E-07 64.4 7.8 36 42-77 3-38 (621)
330 COG1252 Ndh NADH dehydrogenase 96.0 0.041 8.9E-07 60.0 10.5 38 42-79 2-41 (405)
331 COG2907 Predicted NAD/FAD-bind 96.0 0.0084 1.8E-07 62.5 4.7 36 42-78 7-42 (447)
332 TIGR01810 betA choline dehydro 95.9 0.006 1.3E-07 70.1 4.0 33 45-77 1-34 (532)
333 COG1252 Ndh NADH dehydrogenase 95.9 0.031 6.8E-07 60.9 9.1 58 157-243 211-269 (405)
334 PF06100 Strep_67kDa_ant: Stre 95.9 0.36 7.8E-06 53.5 17.2 36 43-78 2-41 (500)
335 TIGR03197 MnmC_Cterm tRNA U-34 95.9 0.064 1.4E-06 58.9 11.6 61 151-238 131-191 (381)
336 COG2303 BetA Choline dehydroge 95.8 0.008 1.7E-07 69.0 4.5 37 41-77 5-41 (542)
337 KOG0685 Flavin-containing amin 95.8 0.0072 1.6E-07 65.7 3.7 37 42-78 20-57 (498)
338 PRK12770 putative glutamate sy 95.8 0.077 1.7E-06 57.6 11.7 33 44-76 173-206 (352)
339 KOG4254 Phytoene desaturase [C 95.7 0.0079 1.7E-07 64.7 3.5 36 41-76 12-47 (561)
340 KOG2311 NAD/FAD-utilizing prot 95.3 0.06 1.3E-06 58.5 8.2 37 41-77 26-62 (679)
341 PRK11749 dihydropyrimidine deh 95.2 0.17 3.6E-06 57.1 12.2 34 43-76 273-307 (457)
342 TIGR01316 gltA glutamate synth 95.2 0.17 3.6E-06 57.0 12.1 33 44-76 273-305 (449)
343 TIGR03143 AhpF_homolog putativ 95.1 0.13 2.8E-06 59.4 11.2 35 43-77 143-177 (555)
344 PRK12831 putative oxidoreducta 95.0 0.18 4E-06 56.8 11.7 33 44-76 282-314 (464)
345 TIGR03467 HpnE squalene-associ 95.0 1.3 2.8E-05 48.8 18.4 44 188-237 211-254 (419)
346 KOG0399 Glutamate synthase [Am 94.9 0.027 5.8E-07 66.4 4.4 35 44-78 1786-1820(2142)
347 KOG3923 D-aspartate oxidase [A 94.3 0.054 1.2E-06 55.6 4.5 36 43-78 3-45 (342)
348 PRK02705 murD UDP-N-acetylmura 94.1 0.053 1.2E-06 61.1 4.6 34 45-78 2-35 (459)
349 PRK06249 2-dehydropantoate 2-r 94.1 0.062 1.4E-06 57.3 4.9 36 41-76 3-38 (313)
350 PF01210 NAD_Gly3P_dh_N: NAD-d 94.1 0.057 1.2E-06 51.3 4.1 32 45-76 1-32 (157)
351 KOG2960 Protein involved in th 94.1 0.013 2.9E-07 56.7 -0.2 36 43-78 76-113 (328)
352 COG0569 TrkA K+ transport syst 94.0 0.057 1.2E-06 54.6 4.3 35 44-78 1-35 (225)
353 PRK12778 putative bifunctional 94.0 0.37 7.9E-06 58.0 11.7 33 44-76 571-604 (752)
354 PRK12814 putative NADPH-depend 93.8 0.4 8.7E-06 56.5 11.4 34 43-76 323-357 (652)
355 TIGR03169 Nterm_to_SelD pyridi 93.7 0.55 1.2E-05 51.1 11.6 29 44-72 146-180 (364)
356 PRK12810 gltD glutamate syntha 93.7 0.62 1.4E-05 52.7 12.3 37 359-400 431-467 (471)
357 PF03721 UDPG_MGDP_dh_N: UDP-g 93.6 0.05 1.1E-06 53.3 2.8 33 44-76 1-33 (185)
358 PRK01438 murD UDP-N-acetylmura 93.5 0.075 1.6E-06 60.3 4.5 33 44-76 17-49 (480)
359 TIGR02352 thiamin_ThiO glycine 93.5 4.3 9.4E-05 43.2 18.0 62 151-238 133-194 (337)
360 PF02737 3HCDH_N: 3-hydroxyacy 93.4 0.075 1.6E-06 51.8 3.7 32 45-76 1-32 (180)
361 COG1251 NirB NAD(P)H-nitrite r 93.4 0.2 4.4E-06 57.6 7.4 66 11-76 106-178 (793)
362 KOG1336 Monodehydroascorbate/f 92.9 0.43 9.3E-06 52.4 8.7 36 43-78 213-248 (478)
363 KOG1238 Glucose dehydrogenase/ 92.9 0.12 2.6E-06 58.7 4.7 38 41-78 55-93 (623)
364 PF02558 ApbA: Ketopantoate re 92.6 0.15 3.2E-06 47.9 4.4 31 46-76 1-31 (151)
365 PRK14106 murD UDP-N-acetylmura 92.5 0.15 3.1E-06 57.4 5.0 36 41-76 3-38 (450)
366 TIGR03862 flavo_PP4765 unchara 92.4 0.57 1.2E-05 51.1 9.0 56 155-237 86-141 (376)
367 PRK05708 2-dehydropantoate 2-r 92.3 0.16 3.4E-06 54.0 4.6 34 43-76 2-35 (305)
368 PRK06129 3-hydroxyacyl-CoA deh 92.1 0.15 3.3E-06 54.2 4.3 33 45-77 4-36 (308)
369 PRK05249 soluble pyridine nucl 92.0 0.18 3.8E-06 56.9 4.8 99 43-238 175-273 (461)
370 PF00996 GDI: GDP dissociation 91.8 0.2 4.2E-06 55.6 4.7 39 41-79 2-40 (438)
371 PRK12921 2-dehydropantoate 2-r 91.5 0.21 4.6E-06 52.8 4.6 31 44-74 1-31 (305)
372 PRK07819 3-hydroxybutyryl-CoA 91.4 0.22 4.7E-06 52.4 4.4 34 44-77 6-39 (286)
373 PRK06522 2-dehydropantoate 2-r 91.4 0.21 4.5E-06 52.9 4.2 32 45-76 2-33 (304)
374 TIGR01470 cysG_Nterm siroheme 91.0 0.32 6.8E-06 48.4 4.9 33 43-75 9-41 (205)
375 PRK08293 3-hydroxybutyryl-CoA 90.9 0.26 5.7E-06 51.8 4.5 34 44-77 4-37 (287)
376 PRK06719 precorrin-2 dehydroge 90.9 0.31 6.8E-06 46.2 4.5 33 41-73 11-43 (157)
377 KOG3851 Sulfide:quinone oxidor 90.8 0.77 1.7E-05 47.8 7.4 42 41-82 37-80 (446)
378 PF13478 XdhC_C: XdhC Rossmann 90.8 0.35 7.5E-06 44.7 4.6 34 46-79 1-34 (136)
379 PRK06116 glutathione reductase 90.8 0.31 6.7E-06 54.8 5.2 36 43-78 167-202 (450)
380 PRK07530 3-hydroxybutyryl-CoA 90.7 0.28 6E-06 51.7 4.5 34 44-77 5-38 (292)
381 cd05292 LDH_2 A subgroup of L- 90.7 0.28 6.1E-06 52.1 4.5 33 45-77 2-36 (308)
382 PF00056 Ldh_1_N: lactate/mala 90.6 0.33 7.2E-06 45.2 4.4 34 44-77 1-37 (141)
383 COG1004 Ugd Predicted UDP-gluc 90.6 0.28 6E-06 52.7 4.1 34 44-77 1-34 (414)
384 PF02254 TrkA_N: TrkA-N domain 90.6 0.28 6.1E-06 43.6 3.7 32 46-77 1-32 (116)
385 PRK09260 3-hydroxybutyryl-CoA 90.4 0.28 6.2E-06 51.6 4.2 33 45-77 3-35 (288)
386 PF01262 AlaDh_PNT_C: Alanine 90.3 0.33 7.2E-06 46.6 4.2 35 42-76 19-53 (168)
387 PRK12769 putative oxidoreducta 90.3 1.9 4.2E-05 50.9 11.4 34 44-77 469-503 (654)
388 PRK06035 3-hydroxyacyl-CoA deh 90.1 0.3 6.5E-06 51.4 4.0 34 44-77 4-37 (291)
389 cd00401 AdoHcyase S-adenosyl-L 90.0 0.32 6.9E-06 53.5 4.2 35 43-77 202-236 (413)
390 TIGR01763 MalateDH_bact malate 90.0 0.4 8.7E-06 50.9 4.9 33 44-76 2-35 (305)
391 TIGR00518 alaDH alanine dehydr 90.0 0.33 7.1E-06 53.0 4.3 34 43-76 167-200 (370)
392 PRK09424 pntA NAD(P) transhydr 89.9 0.29 6.4E-06 55.3 3.9 35 43-77 165-199 (509)
393 PRK00066 ldh L-lactate dehydro 89.8 0.46 9.9E-06 50.7 5.2 38 40-77 3-42 (315)
394 PRK05808 3-hydroxybutyryl-CoA 89.8 0.37 8E-06 50.5 4.4 33 45-77 5-37 (282)
395 KOG1336 Monodehydroascorbate/f 89.8 1.3 2.9E-05 48.6 8.6 40 190-239 143-182 (478)
396 TIGR03377 glycerol3P_GlpA glyc 89.8 2 4.4E-05 49.1 10.8 75 151-246 124-200 (516)
397 TIGR01318 gltD_gamma_fam gluta 89.8 2.6 5.5E-05 47.7 11.4 35 43-77 282-317 (467)
398 PRK15116 sulfur acceptor prote 89.7 0.45 9.8E-06 49.2 4.8 36 41-76 28-64 (268)
399 PRK11064 wecC UDP-N-acetyl-D-m 89.7 0.33 7.3E-06 53.8 4.1 34 44-77 4-37 (415)
400 TIGR02354 thiF_fam2 thiamine b 89.6 0.48 1E-05 46.9 4.8 36 41-76 19-55 (200)
401 KOG4716 Thioredoxin reductase 89.5 0.34 7.3E-06 50.6 3.6 35 42-76 18-52 (503)
402 PRK08229 2-dehydropantoate 2-r 89.5 0.42 9.1E-06 51.5 4.6 32 44-75 3-34 (341)
403 PRK06718 precorrin-2 dehydroge 89.4 0.48 1E-05 47.0 4.6 34 41-74 8-41 (202)
404 PF13241 NAD_binding_7: Putati 89.3 0.24 5.3E-06 43.3 2.2 36 41-76 5-40 (103)
405 PF00899 ThiF: ThiF family; I 89.2 0.42 9.2E-06 44.0 3.8 34 43-76 2-36 (135)
406 PRK12779 putative bifunctional 89.1 3 6.5E-05 51.3 12.0 33 44-76 448-480 (944)
407 PRK07066 3-hydroxybutyryl-CoA 89.1 0.52 1.1E-05 50.3 4.9 34 44-77 8-41 (321)
408 cd01080 NAD_bind_m-THF_DH_Cycl 88.9 0.58 1.3E-05 45.0 4.6 35 41-75 42-77 (168)
409 PLN02712 arogenate dehydrogena 88.8 0.64 1.4E-05 54.7 5.8 34 42-75 51-84 (667)
410 KOG1346 Programmed cell death 88.7 0.67 1.5E-05 49.7 5.2 48 190-244 409-458 (659)
411 TIGR03315 Se_ygfK putative sel 88.6 3.8 8.3E-05 50.3 12.3 35 43-77 666-702 (1012)
412 KOG2495 NADH-dehydrogenase (ub 88.6 2.3 5E-05 46.2 9.2 41 189-236 288-328 (491)
413 PRK04308 murD UDP-N-acetylmura 88.4 0.61 1.3E-05 52.3 5.2 35 43-77 5-39 (445)
414 PRK14620 NAD(P)H-dependent gly 88.3 0.53 1.2E-05 50.4 4.4 32 45-76 2-33 (326)
415 PF01488 Shikimate_DH: Shikima 88.3 0.79 1.7E-05 42.3 5.0 35 42-76 11-46 (135)
416 COG1063 Tdh Threonine dehydrog 88.2 0.53 1.2E-05 51.0 4.3 32 45-76 171-203 (350)
417 PRK12475 thiamine/molybdopteri 88.1 0.64 1.4E-05 50.0 4.8 36 41-76 22-58 (338)
418 PTZ00082 L-lactate dehydrogena 87.9 0.77 1.7E-05 49.1 5.2 35 44-78 7-42 (321)
419 TIGR02356 adenyl_thiF thiazole 87.7 0.8 1.7E-05 45.4 4.9 36 41-76 19-55 (202)
420 PF13738 Pyr_redox_3: Pyridine 87.7 0.48 1E-05 46.6 3.4 35 42-76 166-200 (203)
421 PRK04148 hypothetical protein; 87.6 0.44 9.5E-06 43.7 2.7 33 44-77 18-50 (134)
422 PRK06223 malate dehydrogenase; 87.6 0.68 1.5E-05 49.2 4.6 34 44-77 3-37 (307)
423 KOG0405 Pyridine nucleotide-di 87.5 0.68 1.5E-05 48.7 4.3 36 40-75 17-52 (478)
424 TIGR03026 NDP-sugDHase nucleot 87.5 0.53 1.1E-05 52.3 3.9 33 45-77 2-34 (411)
425 PRK14619 NAD(P)H-dependent gly 87.3 0.78 1.7E-05 48.7 4.9 36 42-77 3-38 (308)
426 PRK02472 murD UDP-N-acetylmura 87.3 0.74 1.6E-05 51.6 5.0 34 44-77 6-39 (447)
427 cd05293 LDH_1 A subgroup of L- 87.2 0.79 1.7E-05 48.8 4.8 34 43-76 3-38 (312)
428 PRK07688 thiamine/molybdopteri 86.8 0.84 1.8E-05 49.1 4.8 36 41-76 22-58 (339)
429 TIGR02355 moeB molybdopterin s 86.7 0.9 2E-05 46.4 4.7 36 41-76 22-58 (240)
430 PRK06130 3-hydroxybutyryl-CoA 86.7 0.81 1.8E-05 48.7 4.6 34 44-77 5-38 (311)
431 PRK07417 arogenate dehydrogena 86.6 0.63 1.4E-05 48.7 3.7 32 45-76 2-33 (279)
432 TIGR00936 ahcY adenosylhomocys 86.6 0.73 1.6E-05 50.6 4.2 35 43-77 195-229 (406)
433 PRK05675 sdhA succinate dehydr 86.6 14 0.0003 42.9 15.0 64 155-239 126-191 (570)
434 PRK03369 murD UDP-N-acetylmura 86.5 0.72 1.6E-05 52.4 4.4 32 44-75 13-44 (488)
435 TIGR02964 xanthine_xdhC xanthi 86.4 0.85 1.8E-05 46.7 4.4 36 42-77 99-134 (246)
436 PRK09496 trkA potassium transp 86.2 0.75 1.6E-05 51.7 4.3 33 45-77 2-34 (453)
437 PLN02602 lactate dehydrogenase 86.1 1.1 2.5E-05 48.3 5.4 33 44-76 38-72 (350)
438 PRK00094 gpsA NAD(P)H-dependen 86.1 0.76 1.7E-05 49.0 4.1 32 45-76 3-34 (325)
439 PLN02353 probable UDP-glucose 86.1 0.77 1.7E-05 51.7 4.2 34 44-77 2-37 (473)
440 TIGR00561 pntA NAD(P) transhyd 86.0 0.75 1.6E-05 51.9 4.0 35 43-77 164-198 (511)
441 cd01487 E1_ThiF_like E1_ThiF_l 85.9 1.2 2.5E-05 43.1 4.8 32 45-76 1-33 (174)
442 PRK15057 UDP-glucose 6-dehydro 85.8 0.78 1.7E-05 50.4 4.0 33 45-78 2-34 (388)
443 PRK14618 NAD(P)H-dependent gly 85.7 0.85 1.8E-05 48.9 4.2 33 44-76 5-37 (328)
444 TIGR03378 glycerol3P_GlpB glyc 85.6 3.9 8.4E-05 45.2 9.2 65 151-238 259-324 (419)
445 PRK05690 molybdopterin biosynt 85.5 1.1 2.4E-05 45.9 4.7 36 41-76 30-66 (245)
446 PRK08644 thiamine biosynthesis 85.4 1.3 2.8E-05 44.3 5.1 36 41-76 26-62 (212)
447 PF10727 Rossmann-like: Rossma 85.3 0.53 1.1E-05 42.9 2.0 35 41-75 8-42 (127)
448 PLN02545 3-hydroxybutyryl-CoA 85.3 0.9 1.9E-05 47.9 4.1 34 44-77 5-38 (295)
449 PRK10669 putative cation:proto 85.2 0.79 1.7E-05 53.1 3.9 35 43-77 417-451 (558)
450 cd05291 HicDH_like L-2-hydroxy 85.2 1 2.2E-05 47.9 4.4 33 45-77 2-36 (306)
451 PRK08306 dipicolinate synthase 85.1 0.93 2E-05 47.9 4.1 34 43-76 152-185 (296)
452 PRK01710 murD UDP-N-acetylmura 84.9 1 2.2E-05 50.8 4.5 34 44-77 15-48 (458)
453 PRK05476 S-adenosyl-L-homocyst 84.9 1 2.2E-05 49.8 4.4 35 43-77 212-246 (425)
454 cd01483 E1_enzyme_family Super 84.6 1.5 3.2E-05 40.8 4.8 33 45-77 1-34 (143)
455 cd00757 ThiF_MoeB_HesA_family 84.6 1.3 2.9E-05 44.7 4.8 36 41-76 19-55 (228)
456 PRK12775 putative trifunctiona 84.5 6.8 0.00015 48.6 11.7 33 43-75 571-604 (1006)
457 cd00755 YgdL_like Family of ac 84.1 1.5 3.2E-05 44.5 4.8 35 42-76 10-45 (231)
458 PRK08328 hypothetical protein; 84.1 1.5 3.2E-05 44.5 4.9 36 41-76 25-61 (231)
459 PRK07502 cyclohexadienyl dehyd 84.1 1.1 2.4E-05 47.6 4.1 33 44-76 7-41 (307)
460 TIGR01915 npdG NADPH-dependent 83.9 1.3 2.7E-05 44.6 4.2 32 45-76 2-34 (219)
461 cd01339 LDH-like_MDH L-lactate 83.8 1.2 2.5E-05 47.2 4.1 31 46-76 1-32 (300)
462 PRK05866 short chain dehydroge 83.8 2 4.4E-05 45.2 6.0 36 41-76 38-74 (293)
463 PTZ00117 malate dehydrogenase; 83.6 1.5 3.2E-05 46.9 4.8 36 42-77 4-40 (319)
464 cd05311 NAD_bind_2_malic_enz N 83.5 1.6 3.5E-05 44.1 4.8 35 42-76 24-61 (226)
465 PRK12549 shikimate 5-dehydroge 83.5 1.4 3E-05 46.2 4.5 33 44-76 128-161 (284)
466 cd05290 LDH_3 A subgroup of L- 83.4 1.5 3.2E-05 46.6 4.7 33 45-77 1-35 (307)
467 PRK08268 3-hydroxy-acyl-CoA de 83.3 1.2 2.7E-05 50.7 4.3 34 44-77 8-41 (507)
468 cd01075 NAD_bind_Leu_Phe_Val_D 83.3 1.7 3.7E-05 43.0 4.8 34 42-75 27-60 (200)
469 cd01078 NAD_bind_H4MPT_DH NADP 83.2 1.7 3.6E-05 42.7 4.8 34 42-75 27-61 (194)
470 PRK07531 bifunctional 3-hydrox 83.1 1.3 2.9E-05 50.3 4.5 34 44-77 5-38 (495)
471 COG0771 MurD UDP-N-acetylmuram 83.0 1.2 2.7E-05 49.3 4.0 36 43-78 7-42 (448)
472 COG1748 LYS9 Saccharopine dehy 82.7 1.6 3.4E-05 47.6 4.6 34 44-77 2-36 (389)
473 cd01485 E1-1_like Ubiquitin ac 82.7 1.7 3.8E-05 42.9 4.6 36 41-76 17-53 (198)
474 PRK13984 putative oxidoreducta 82.5 13 0.00027 43.6 12.5 35 359-399 569-603 (604)
475 COG1893 ApbA Ketopantoate redu 82.4 1.4 3E-05 46.8 4.0 33 44-76 1-33 (307)
476 cd01492 Aos1_SUMO Ubiquitin ac 82.4 1.9 4E-05 42.7 4.7 36 41-76 19-55 (197)
477 PRK03659 glutathione-regulated 82.1 1.5 3.3E-05 51.2 4.5 34 43-76 400-433 (601)
478 PRK08223 hypothetical protein; 82.1 2 4.2E-05 44.9 4.8 36 41-76 25-61 (287)
479 TIGR02279 PaaC-3OHAcCoADH 3-hy 82.0 1.2 2.7E-05 50.5 3.7 34 44-77 6-39 (503)
480 PRK04690 murD UDP-N-acetylmura 82.0 1.5 3.3E-05 49.5 4.4 34 44-77 9-42 (468)
481 COG5044 MRS6 RAB proteins gera 81.9 2 4.3E-05 45.8 4.8 40 42-81 5-44 (434)
482 PLN02494 adenosylhomocysteinas 81.6 1.7 3.8E-05 48.3 4.5 35 43-77 254-288 (477)
483 PRK00683 murD UDP-N-acetylmura 81.4 1.6 3.4E-05 48.6 4.2 34 44-77 4-37 (418)
484 PRK02006 murD UDP-N-acetylmura 81.4 1.8 4E-05 49.3 4.8 33 44-76 8-40 (498)
485 PRK03803 murD UDP-N-acetylmura 81.2 1.8 3.9E-05 48.7 4.6 34 43-76 6-39 (448)
486 PRK09496 trkA potassium transp 81.0 1.6 3.5E-05 49.0 4.2 35 43-77 231-265 (453)
487 PRK00141 murD UDP-N-acetylmura 80.8 1.8 3.9E-05 49.0 4.4 33 44-76 16-48 (473)
488 PRK01368 murD UDP-N-acetylmura 80.8 1.9 4.2E-05 48.4 4.7 33 43-76 6-38 (454)
489 PRK05600 thiamine biosynthesis 80.8 2.1 4.6E-05 46.7 4.8 36 41-76 39-75 (370)
490 TIGR02853 spore_dpaA dipicolin 80.7 1.9 4.2E-05 45.2 4.4 34 43-76 151-184 (287)
491 KOG0024 Sorbitol dehydrogenase 80.6 2.1 4.4E-05 44.9 4.3 33 43-75 170-203 (354)
492 TIGR03366 HpnZ_proposed putati 80.5 2.1 4.6E-05 44.6 4.6 32 44-75 122-154 (280)
493 PLN02695 GDP-D-mannose-3',5'-e 80.3 2.5 5.4E-05 46.2 5.2 38 39-76 17-55 (370)
494 KOG2495 NADH-dehydrogenase (ub 80.3 23 0.0005 38.8 12.0 48 190-238 124-171 (491)
495 PF00670 AdoHcyase_NAD: S-aden 80.0 1.9 4.2E-05 40.8 3.6 33 44-76 24-56 (162)
496 PRK05653 fabG 3-ketoacyl-(acyl 80.0 2.4 5.2E-05 42.6 4.7 37 41-77 3-40 (246)
497 TIGR01505 tartro_sem_red 2-hyd 79.9 1.9 4.2E-05 45.3 4.1 32 45-76 1-32 (291)
498 PRK07326 short chain dehydroge 79.8 2.3 5E-05 42.7 4.5 35 42-76 5-40 (237)
499 PRK08217 fabG 3-ketoacyl-(acyl 79.7 2.4 5.2E-05 43.0 4.6 34 43-76 5-39 (253)
500 PRK00045 hemA glutamyl-tRNA re 79.6 2.3 5E-05 47.4 4.7 35 42-76 181-216 (423)
No 1
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-81 Score=719.72 Aligned_cols=534 Identities=29% Similarity=0.458 Sum_probs=413.1
Q ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcccccee
Q 005134 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118 (712)
Q Consensus 39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~ 118 (712)
|++.++||+||||||+||++|++|+++|++|+||||++.+...+++..+++++|++|+++ ||.+++.+.+.+.......
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~l-Gl~~~l~~~g~~~~~~~~~ 81 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRL-GIADEVRSAGLPVDYPTDI 81 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhc-ChHHHHHhhcCCccccCCc
Confidence 446679999999999999999999999999999999999999999999999999999999 9999999988766444455
Q ss_pred EeeecCCCCeeeeecCCCccc-cc-------cccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccce
Q 005134 119 IYCTSVTGPILGSVDHMQPQD-FE-------KVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE 190 (712)
Q Consensus 119 ~~~~~~~G~~l~~~~~~~~~~-~~-------~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (712)
.++....|+.+.++....... .. ...+|+....++|..|+++|++.+.+.+. ++
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~------------------v~ 143 (545)
T PRK06126 82 AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPG------------------VT 143 (545)
T ss_pred eEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCC------------------ce
Confidence 566666777776654322111 00 11244556789999999999999887532 49
Q ss_pred EEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCcccccc
Q 005134 191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL 270 (712)
Q Consensus 191 v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~ 270 (712)
|+++++|+++++++++|++++.+..+|+ .+++++||||+|||++|.||+++|+.+.|....+..+.+.+..+++....
T Consensus 144 i~~~~~v~~i~~~~~~v~v~~~~~~~g~--~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~ 221 (545)
T PRK06126 144 LRYGHRLTDFEQDADGVTATVEDLDGGE--SLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALV 221 (545)
T ss_pred EEeccEEEEEEECCCeEEEEEEECCCCc--EEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHh
Confidence 9999999999999999988887544553 46899999999999999999999999999888887788878766554432
Q ss_pred ccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhh
Q 005134 271 LNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEV 350 (712)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~v 350 (712)
...+...+++++|+..+++...+. ...|.+. .+.+. .....++++.+.+.+++.++. ...+++.....|.+...+
T Consensus 222 -~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~w~~~~~~ 296 (545)
T PRK06126 222 -GHDPAWMYWLFNPDRRGVLVAIDG-RDEWLFH-QLRGG-EDEFTIDDVDARAFVRRGVGE-DIDYEVLSVVPWTGRRLV 296 (545)
T ss_pred -cCCCceEEEEECCCccEEEEEECC-CCeEEEE-EecCC-CCCCCCCHHHHHHHHHHhcCC-CCCeEEEeecccchhhee
Confidence 234455677778876666666553 3567665 22222 222356778889999999984 456778888899999999
Q ss_pred hccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005134 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA 430 (712)
Q Consensus 351 a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~ 430 (712)
+++|+ +|||||+|||||.|+|++|||||+||+||+||+|||++++++++.+++|++|++||+|+++.+++.+..+...
T Consensus 297 a~~~~--~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~ 374 (545)
T PRK06126 297 ADSYR--RGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPIAARNTDYARRNADA 374 (545)
T ss_pred hhhhc--cCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHH
Confidence 99998 4999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred hcccccccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCccc
Q 005134 431 AMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQ 510 (712)
Q Consensus 431 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (712)
+..... .+ ...+.++.+...|+++.+++.......
T Consensus 375 ~~~~~~----~~-----------------------------------------~~~~~~~~~~~~r~~~~~~~~~~~~~~ 409 (545)
T PRK06126 375 LGSFPV----PP-----------------------------------------EIEDDGPAGDAARRKVGDALSEHARQE 409 (545)
T ss_pred hccccc----ch-----------------------------------------hhccCChhHHHHHHHHHHHHhhccccc
Confidence 421100 00 001223344444555555443333333
Q ss_pred ccccccccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcC
Q 005134 511 LQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAP 590 (712)
Q Consensus 511 ~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~ 590 (712)
+...++++||+|.+++++.+++.+ +|.++...|.|+++||+|+||+||. +++||+||+|. +||||++.
T Consensus 410 ~~~~~~~~g~~Y~~~~~~~~~~~~-----~~~~~~~~~~~~~~pG~r~ph~~l~----~~~s~~dl~g~---~f~Ll~~~ 477 (545)
T PRK06126 410 FNSPGITLGYRYDGSPIIVPDGTP-----PPPDDPGVYVPSACPGGRAPHAWLS----DGRSLYDLFGP---GFTLLRFG 477 (545)
T ss_pred cccceeeecceecCCceecCCCCC-----CCCCcccccccCCCCCcCCCCeeec----CCcchHHhcCC---ceEEEecC
Confidence 444568899999999988755332 1223345689999999999999996 35899999985 49999987
Q ss_pred CccchHHHHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEc
Q 005134 591 VEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVR 670 (712)
Q Consensus 591 ~~~~~~~~~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVR 670 (712)
++ ..|.+++.++++.+|+||+++.++. .+|. ++++.||||||
T Consensus 478 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~---~~~~~~avLvR 519 (545)
T PRK06126 478 DA--AVDVAPLEAAAAALGVPLAVVDLPG---------------------------------PEAA---ALYEADLVLVR 519 (545)
T ss_pred CC--cHHHHHHHHHHHHhCCceEEEEeCc---------------------------------HHhH---hhccCCEEEEC
Confidence 54 3699999999999999999999931 1333 34578999999
Q ss_pred CCceEEEeeCCCCCCChHHHHHHHHH
Q 005134 671 PDDHIAWRSKSGVSGNPKLEMEMAFS 696 (712)
Q Consensus 671 PDg~VaWr~~~~~~~~~~~~l~~~~~ 696 (712)
||||||||+++. ++|+.+.|+++|.
T Consensus 520 PD~~vawr~~~~-~~~~~~~l~~~~~ 544 (545)
T PRK06126 520 PDQHVAWRGDAA-PDDAAALLDQVLG 544 (545)
T ss_pred CCCceeeccCCC-CCCHHHHHHHHhc
Confidence 999999999865 7888887777654
No 2
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=2.8e-65 Score=584.58 Aligned_cols=522 Identities=23% Similarity=0.344 Sum_probs=360.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~ 121 (712)
.++||+||||||+||++|+.|+++|++|+||||++.+...+++..+++++|++|+++ |+.+++.+.+.+..... .+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~--~~~ 98 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRL-GCGERMVDKGVSWNVGK--VFL 98 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHc-CCcHHHHhhCceeecee--EEe
Confidence 568999999999999999999999999999999998888999999999999999999 99999988775432211 111
Q ss_pred ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (712)
Q Consensus 122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~ 201 (712)
. +..+..++...... ........++|..|+++|.+++.+.+. +++++++++++++
T Consensus 99 ~---~~~~~~~~~~~~~~----~~~~~~~~~~q~~le~~L~~~~~~~~~------------------v~v~~~~~v~~i~ 153 (547)
T PRK08132 99 R---DEEVYRFDLLPEPG----HRRPAFINLQQYYVEGYLVERAQALPN------------------IDLRWKNKVTGLE 153 (547)
T ss_pred C---CCeEEEecCCCCCC----CCCCceEecCHHHHHHHHHHHHHhCCC------------------cEEEeCCEEEEEE
Confidence 1 12222222111000 001124568999999999999987642 4999999999999
Q ss_pred EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEE
Q 005134 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281 (712)
Q Consensus 202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (712)
++++++++++... ++ .+++++||||+|||++|.||+.+|+++.|......++.+...... .+ .....+++
T Consensus 154 ~~~~~v~v~~~~~-~g---~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~--~~----~~~~~~~~ 223 (547)
T PRK08132 154 QHDDGVTLTVETP-DG---PYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKA--DF----PTERWFWF 223 (547)
T ss_pred EcCCEEEEEEECC-CC---cEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecC--CC----CCeeeEEE
Confidence 9999988887632 23 247999999999999999999999999887665555544332210 00 01112222
Q ss_pred e---ecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccC
Q 005134 282 F---NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358 (712)
Q Consensus 282 ~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~ 358 (712)
. +++. .+++. ....+.|.+..............+.+.+.+.++++++.. .++++.....|.++.+++++|+ +
T Consensus 224 ~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~--~ 298 (547)
T PRK08132 224 DPPFHPGQ-SVLLH-RQPDNVWRIDFQLGWDADPEAEKKPENVIPRVRALLGED-VPFELEWVSVYTFQCRRMDRFR--H 298 (547)
T ss_pred eccCCCCc-EEEEE-eCCCCeEEEEEecCCCCCchhhcCHHHHHHHHHHHcCCC-CCeeEEEEEeeeeeeeeecccc--c
Confidence 1 2222 22222 223355654432221111112345677888899988743 4556666677888999999998 4
Q ss_pred CcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHhccccccc
Q 005134 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSAL 438 (712)
Q Consensus 359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~~ 438 (712)
|||||+|||||.|+|++|||||+||+||+||+|||+.+++|++.+++|++|++||+|+++.+++.+..+...+...
T Consensus 299 gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~---- 374 (547)
T PRK08132 299 GRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAADENIRNSTRSTDFITPK---- 374 (547)
T ss_pred ccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999998876554432110
Q ss_pred CCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCccccccccccc
Q 005134 439 GLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDL 518 (712)
Q Consensus 439 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 518 (712)
.+ ... .++...+.. + . +...++..+.. ....+
T Consensus 375 --~~-~~~----------------~~r~~~~~~------------~-~--------~~~~~~~~~~~--------~~~~~ 406 (547)
T PRK08132 375 --SP-VSR----------------LFRDAVLRL------------A-R--------DHPFARRLVNS--------GRLSV 406 (547)
T ss_pred --CH-HHH----------------HHHHHHHhh------------h-c--------ccHHHHHHHhc--------ccccc
Confidence 00 000 000000000 0 0 00111222211 11247
Q ss_pred CccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHHH
Q 005134 519 GFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLA 598 (712)
Q Consensus 519 gy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~~ 598 (712)
+++|.+++++.++. ..|.++.+||.|+||+||.. +++++||+||+|. +|+||++.++ ..|
T Consensus 407 ~~~y~~~~~~~~~~-------------~~~~~~~~pG~r~p~~~~~~-~~~~~~l~dl~g~---~f~ll~~~~~--~~~- 466 (547)
T PRK08132 407 PAVYADSPLNTPDG-------------DAFAGGPVPGAPAPDAPVRA-DGEPGWLLDLLGG---GFTLLLFGDD--AAA- 466 (547)
T ss_pred CcccCCCCCCCCcc-------------cccCCCCCCCCCCCCCcccC-CCCceEHHHhcCC---CEEEEEecCC--chh-
Confidence 89999998874321 12557789999999999975 5667899999974 5999997653 346
Q ss_pred HHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEcCCceEEEe
Q 005134 599 RAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWR 678 (712)
Q Consensus 599 ~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~VaWr 678 (712)
.++.+++...+++++++.+++++.. + ... .++.|. ++.|.+.+++.+.++||||||||||||
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~-~~~~d~--------~~~~~~~~~~~~~~~~LvRPDg~va~~ 528 (547)
T PRK08132 467 AALLQALAAAALPVRVVAVVPAGAA--------Q-AAA-GVLEDA--------DGLAAERYDARPGTVYLIRPDQHVAAR 528 (547)
T ss_pred hhhhhhhhccCCceEEEEEecCccc--------c-cCc-ccccCc--------ccHHHHHhCCCCCeEEEECCCceEEEE
Confidence 3555566778999999998543210 0 001 134453 268999999999999999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHhhC
Q 005134 679 SKSGVSGNPKLEMEMAFSAVLG 700 (712)
Q Consensus 679 ~~~~~~~~~~~~l~~~~~~~~~ 700 (712)
... +....|...|+++++
T Consensus 529 ~~~----~~~~~~~~~l~~~~~ 546 (547)
T PRK08132 529 WRT----PDAAAVRAALARALG 546 (547)
T ss_pred ecC----CCHHHHHHHHHHHhc
Confidence 652 233557777777655
No 3
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-63 Score=564.49 Aligned_cols=489 Identities=24% Similarity=0.323 Sum_probs=343.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~ 121 (712)
.++||+||||||+||++|+.|+++|++|+||||++.+...+++..|++++||+|+++ |+.+++.+.+.+...... +.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~~--~~ 78 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDL-GVLDRVVAAGGLYPPMRI--YR 78 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHc-CcHHHHHhcCccccceeE--Ee
Confidence 458999999999999999999999999999999999988999999999999999999 999999987765432211 11
Q ss_pred ecCCCCeeeeecCCCccccccccCCc-cccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 122 TSVTGPILGSVDHMQPQDFEKVVSPV-SVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 122 ~~~~G~~l~~~~~~~~~~~~~~~~p~-~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
.+..+.......... .....++ ....++|..|+++|.+.+.+.|+ +|+++++++++
T Consensus 79 ---~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~i 135 (502)
T PRK06184 79 ---DDGSVAESDMFAHLE-PTPDEPYPLPLMVPQWRTERILRERLAELGH-------------------RVEFGCELVGF 135 (502)
T ss_pred ---CCceEEEeecccccc-CCCCCCCCcceecCHHHHHHHHHHHHHHCCC-------------------EEEeCcEEEEE
Confidence 112122111111000 0001121 23578999999999999988876 99999999999
Q ss_pred EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccc-cEEEEEeecCccccccccCCCceEE
Q 005134 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ-KLVSVHFLSKDLGDYLLNERPGMLF 279 (712)
Q Consensus 201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (712)
++++++|++++...+++ ++++|||||+|||++|.||+++|+++.|..... .++...+.... . .....+
T Consensus 136 ~~~~~~v~v~~~~~~~~----~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~---~----~~~~~~ 204 (502)
T PRK06184 136 EQDADGVTARVAGPAGE----ETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTG---L----DRDAWH 204 (502)
T ss_pred EEcCCcEEEEEEeCCCe----EEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeec---C----CCcceE
Confidence 99999998887633222 479999999999999999999999999877654 44443332211 1 111222
Q ss_pred EEeecC-CeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcce-EEEeecceechhhhcccccc
Q 005134 280 FIFNTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDID-VIDIKPWVMHAEVAEKFLCC 357 (712)
Q Consensus 280 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~-i~~~~~w~~~~~va~~~~~~ 357 (712)
++..+. ...++++.+. ...|.+.+.... ......+++.+.++++...+.....++ +.....|.+..+++++|+
T Consensus 205 ~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-- 279 (502)
T PRK06184 205 QWPDGDMGMIALCPLPG-TDLFQIQAPLPP--GGEPDLSADGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYR-- 279 (502)
T ss_pred EccCCCCcEEEEEEccC-CCeEEEEEEcCC--CccCCCCHHHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhc--
Confidence 222332 2233334332 235655554322 222456788889999988875543332 334566888888999998
Q ss_pred CCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHhcccccc
Q 005134 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSA 437 (712)
Q Consensus 358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~ 437 (712)
+|||||+|||||.|+|++|||||+||+||+||+|||+++++| +.+.+|++|++||+|+++.+++.+...++....
T Consensus 280 ~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~---- 354 (502)
T PRK06184 280 VGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG-APEALLDTYEEERRPVAAAVLGLSTELLDAIKR---- 354 (502)
T ss_pred CCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----
Confidence 499999999999999999999999999999999999999999 889999999999999999998877654432210
Q ss_pred cCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCcccccccccc
Q 005134 438 LGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAED 517 (712)
Q Consensus 438 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (712)
.. .++. .....
T Consensus 355 ------------------------~~------------------------------~~~~---------------~~~~~ 365 (502)
T PRK06184 355 ------------------------GD------------------------------MRRG---------------RDVQQ 365 (502)
T ss_pred ------------------------HH------------------------------hhcc---------------cchhc
Confidence 00 0000 00113
Q ss_pred cCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHH
Q 005134 518 LGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHL 597 (712)
Q Consensus 518 lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~ 597 (712)
++.+|..++++..++. ..++.+||.|+||+||...+++.+||+|+++.+ +|+||++.+. .|
T Consensus 366 ~~~~y~~~~~~~~~~~--------------~~~~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~--~~~ll~~~~~---~~ 426 (502)
T PRK06184 366 LDLGYRGSSLAVDGPE--------------RTGGLRAGDRAPDAPLLGAAGQPTRLFDLFRGP--HWTLLAFGAG---AA 426 (502)
T ss_pred ceeecCCCcccCCCcc--------------cCCCCCCcCCCCCchhccCCCceeeHHHhhCCC--cEEEEEecCC---ch
Confidence 5667777777543211 024578999999999975345678999999753 5999986532 23
Q ss_pred HHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEcCCceEEE
Q 005134 598 ARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAW 677 (712)
Q Consensus 598 ~~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~VaW 677 (712)
.. .... ++.++.+++... ..++.|. .+.|.+.+++...++|||||||||||
T Consensus 427 ~~-----~~~~--~~~~~~~~~~~~--------------~~~~~d~--------~g~~~~~~~~~~~~~~lvRPDg~v~~ 477 (502)
T PRK06184 427 AI-----LARR--GLRIHRVGDAAE--------------GGDLVDD--------AGHFRDAYGLTGGTLVLVRPDGYVGL 477 (502)
T ss_pred hh-----hhhc--CceEEEecccCC--------------CCceeCC--------CccHHHHhcCCCCcEEEECCCcceEE
Confidence 21 1233 467777753210 1135553 26899999999999999999999999
Q ss_pred eeCCCCCCChHHHHHHHHHHh
Q 005134 678 RSKSGVSGNPKLEMEMAFSAV 698 (712)
Q Consensus 678 r~~~~~~~~~~~~l~~~~~~~ 698 (712)
|... +....|.+.|+++
T Consensus 478 ~~~~----~~~~~~~~~l~~~ 494 (502)
T PRK06184 478 IAAG----DDAAALEAYLARV 494 (502)
T ss_pred EecC----CCHHHHHHHHHHh
Confidence 9652 2344577777665
No 4
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=8.3e-61 Score=541.50 Aligned_cols=488 Identities=25% Similarity=0.364 Sum_probs=326.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~ 122 (712)
++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++|+|+++ |+.+++.+.+.+..... +.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~---~~- 76 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMR-GLLERFLEKGRKLPSGH---FA- 76 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhc-CcHHHHHhhcccccceE---Ee-
Confidence 48999999999999999999999999999999999988999999999999999999 99999988775543211 11
Q ss_pred cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (712)
Q Consensus 123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~ 202 (712)
...+. ++.. ... ......+.++|..++++|.+.+++.|+ +++++++++++++
T Consensus 77 ~~~~~----~~~~---~~~--~~~~~~~~i~q~~le~~L~~~~~~~gv-------------------~v~~~~~v~~i~~ 128 (493)
T PRK08244 77 GLDTR----LDFS---ALD--TSSNYTLFLPQAETEKVLEEHARSLGV-------------------EIFRGAEVLAVRQ 128 (493)
T ss_pred ccccc----CCcc---cCC--CCCCcEEEecHHHHHHHHHHHHHHcCC-------------------eEEeCCEEEEEEE
Confidence 11110 1110 000 111123568999999999999988876 9999999999999
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEe
Q 005134 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (712)
Q Consensus 203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (712)
+++++++++... +| .+++++||||+|||++|.||+++|+++.|.......+...+.... ..+...+..+
T Consensus 129 ~~~~v~v~~~~~-~g---~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 197 (493)
T PRK08244 129 DGDGVEVVVRGP-DG---LRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKD-------PPPSSVLSLC 197 (493)
T ss_pred cCCeEEEEEEeC-Cc---cEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecC-------CCCcceeEEE
Confidence 999988887632 23 247999999999999999999999998877654443333332211 1112233345
Q ss_pred ecCCeEEEEEecCCCCeEEEEEecC--CCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccCCc
Q 005134 283 NTEAIGVLVAHDLKEGEFILQVPFY--PPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360 (712)
Q Consensus 283 ~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gR 360 (712)
+++...++++.+ ++.+.+.+... .+.......+.+.+.+.+++.++......+......|....+++++|+ +||
T Consensus 198 ~~~g~~~~~P~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~gR 273 (493)
T PRK08244 198 TREGGVMIVPLS--GGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDFGLNDPVWMSRFGNATRQAERYR--SGR 273 (493)
T ss_pred eCCceEEEEECC--CCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCCCcCCeeEEEecccceeeHhhhc--cCc
Confidence 666555555554 34444433211 111122345677788888888775432222333445677778999998 599
Q ss_pred EEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHhcccccccCC
Q 005134 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440 (712)
Q Consensus 361 V~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~~g~ 440 (712)
|||+|||||.++|++|||||+||+||+||+|||+++++|++.+.+|++|++||+|+++.++..+......+..
T Consensus 274 v~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~------- 346 (493)
T PRK08244 274 IFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLRNTEVQTKLFDF------- 346 (493)
T ss_pred EEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999888765432222100
Q ss_pred CcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCcccccccccccCc
Q 005134 441 DPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGF 520 (712)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgy 520 (712)
++ ... .++. .+..+ + . .+ .+++.+.. ....+++
T Consensus 347 ~~-~~~----------------~~R~-~~~~~-----------~-~--~~-------~~~~~~~~--------~~~~~~~ 379 (493)
T PRK08244 347 TR-PGL----------------ALRS-MLSDL-----------L-G--FP-------EVNRYLAG--------QISALDV 379 (493)
T ss_pred Cc-hhH----------------HHHH-HHHHH-----------h-c--ch-------HHHHHHHH--------HHhcCCc
Confidence 00 000 0000 00000 0 0 00 00111100 0134788
Q ss_pred cccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHHHHH
Q 005134 521 RYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARA 600 (712)
Q Consensus 521 ~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~~~a 600 (712)
+|..++.. + +...||.|+||+||...++.+++++|+++.+ +|+||++.+.. ..|.
T Consensus 380 ~Y~~~~~~------------~--------~~~~~G~r~p~~~~~~~~~~~~~l~~~~~~~--~~~ll~~~~~~-~~~~-- 434 (493)
T PRK08244 380 HYEPDAEM------------P--------PHPLNGKRLPDLELTLSDGESERLYSLLHKG--TFLLLSFGSEP-QDWS-- 434 (493)
T ss_pred ccCCCCcc------------C--------CCCCCCCCCCCcceecCCCCceeHHHhhcCC--eEEEEEecCCc-cccc--
Confidence 89532210 0 1247999999999964344558999999865 49999876432 1221
Q ss_pred HHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEcCCceEEEeeC
Q 005134 601 ALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRSK 680 (712)
Q Consensus 601 a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~VaWr~~ 680 (712)
...+++++..... |.. ..|. ...+||||||||||||++
T Consensus 435 -------~~~~~~~~~~~~~---------------------~~~--------~~~~------~~~~~lvRPDg~vaw~~~ 472 (493)
T PRK08244 435 -------RYPHVRVVRASLA---------------------EGR--------ADWN------DVHTALIRPDGHVAWAVD 472 (493)
T ss_pred -------cCCceEEEecccc---------------------ccc--------CccC------CCceEEECCCCceEEeec
Confidence 1245555543100 000 1231 125899999999999986
Q ss_pred CCCCCChHHHHHHHHHHhhC
Q 005134 681 SGVSGNPKLEMEMAFSAVLG 700 (712)
Q Consensus 681 ~~~~~~~~~~l~~~~~~~~~ 700 (712)
.. ..++.+.|.++|.+.+|
T Consensus 473 ~~-~~~~~~~~~~~l~~~~~ 491 (493)
T PRK08244 473 AS-DPNAEEAIAAGISRWCG 491 (493)
T ss_pred CC-cccchHHHHHHHHHhhC
Confidence 32 34555678999988775
No 5
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=1.9e-55 Score=502.19 Aligned_cols=523 Identities=25% Similarity=0.328 Sum_probs=339.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~ 120 (712)
+..+||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++.+.+.+... +.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~---~~~ 83 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAI-GLADEVLPHTTPNHG---MRF 83 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHc-CChhHHHhhcccCCc---eEE
Confidence 3458999999999999999999999999999999999988999999999999999999 999999887755432 222
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceEEeCcEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~ 199 (712)
. +..|+.+..++...... ........+.|..|+++|++.+.+. |+ +|+++++|++
T Consensus 84 ~-~~~g~~~~~~~~~~~~~----~g~~~~~~~~q~~le~~L~~~~~~~~gv-------------------~v~~g~~v~~ 139 (538)
T PRK06183 84 L-DAKGRCLAEIARPSTGE----FGWPRRNAFHQPLLEAVLRAGLARFPHV-------------------RVRFGHEVTA 139 (538)
T ss_pred E-cCCCCEEEEEcCCCCCC----CCCChhccCChHHHHHHHHHHHHhCCCc-------------------EEEcCCEEEE
Confidence 2 23455554443211111 0111235688999999999998875 44 9999999999
Q ss_pred EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (712)
Q Consensus 200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (712)
+++++++|++++... +|+ +++++|||||||||++|.||+++|+.+.+......++.+.+...... ......+
T Consensus 140 i~~~~~~v~v~~~~~-~G~--~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 211 (538)
T PRK06183 140 LTQDDDGVTVTLTDA-DGQ--RETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDP-----LGGPHTY 211 (538)
T ss_pred EEEcCCeEEEEEEcC-CCC--EEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCc-----cCCCceE
Confidence 999999998887632 342 46899999999999999999999999888776666665543221111 1112234
Q ss_pred EEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCC-CHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccC
Q 005134 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF-SPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358 (712)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~ 358 (712)
+.++++...++++...+..+|.+.+ .+. +..+.+ +++.+.++++.+. ..+...++.....|.++.+++++|+ +
T Consensus 212 ~~~~~~~~~~~~p~~~~~~r~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~--~ 285 (538)
T PRK06183 212 QYCDPARPYTSVRLPHGRRRWEFML--LPG-ETEEQLASPENVWRLLAPWG-PTPDDAELIRHAVYTFHARVADRWR--S 285 (538)
T ss_pred EEECCCCCEEEEEcCCCeEEEEEEe--CCC-CChhhcCCHHHHHHHHHhhC-CCCcceEEEEEEeeeEccEEhhhhc--c
Confidence 4556665555555433222343332 222 222233 4566777776553 2233456666677888888999998 4
Q ss_pred CcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHhccccccc
Q 005134 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSAL 438 (712)
Q Consensus 359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~~ 438 (712)
|||+|+|||||.|+|++|||||+||+||+||+|||+.+++|.+.+.+|++|++||+|+++.+++.+....+.+..-
T Consensus 286 gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~---- 361 (538)
T PRK06183 286 GRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPT---- 361 (538)
T ss_pred CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC----
Confidence 9999999999999999999999999999999999999999988899999999999999999998887654433110
Q ss_pred CCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCccccccccccc
Q 005134 439 GLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDL 518 (712)
Q Consensus 439 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 518 (712)
++ ... .++..++..+. ..| .+++.+.. ....+
T Consensus 362 --~~-~~~----------------~~R~~~l~~~~--------------~~~-------~~~~~~~~--------~~~~~ 393 (538)
T PRK06183 362 --DR-LAA----------------ALRDAVLRALN--------------YLP-------PLKRYVLE--------MRFKP 393 (538)
T ss_pred --CH-HHH----------------HHHHHHHHhhh--------------cCc-------chhhhhhh--------ccCCC
Confidence 00 000 01111111000 001 01111110 01246
Q ss_pred CccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHHH
Q 005134 519 GFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLA 598 (712)
Q Consensus 519 gy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~~ 598 (712)
..+|..+++..+.. .+...||.|+|+.++.. +++...++|++-.+ +|+||...........
T Consensus 394 ~~~y~~~~~~~~~~----------------~~~~~~G~~~p~~~~~~-~~~~~~~~d~~~~~--~~~ll~~~~~~~~~~~ 454 (538)
T PRK06183 394 MPRLTGGAVVREGE----------------AKHSPVGTLFPQPRVEL-GGGDRGLLDDVLGP--GFAVLGWGCDPLAGLS 454 (538)
T ss_pred CCcccccccccCcc----------------cCCCCcccCcCCCeeEc-CCCCcccchhccCC--ceEEEEecCCchhcCC
Confidence 67888776542110 01236999999999975 34445788855432 5999986322111111
Q ss_pred HHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEcCCceEEEe
Q 005134 599 RAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWR 678 (712)
Q Consensus 599 ~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~VaWr 678 (712)
.++.+..+..+ ..++.+.+.... + ........|. ++...+.++.....+||||||+||+++
T Consensus 455 ~~~~~~~~~~~--~~~~~~~~~~~~------~---~~~~~~~~d~--------~g~~~~~~~~~~~~~~lvRPD~~v~~~ 515 (538)
T PRK06183 455 DEQRARWRALG--ARFVQVVPAVQA------H---TAQDDHDSDV--------DGALRAWLARHGASAVLLRPDRYVAAA 515 (538)
T ss_pred HHHHHHHHHcC--CeEEEEeccccc------c---cCCCceeecC--------CchHHHHHHhCCCEEEEECCCEEEEEe
Confidence 22223344444 444554322110 0 0011112332 256666677778899999999999998
Q ss_pred eCCCCCCChHHHHHHHHHHhh
Q 005134 679 SKSGVSGNPKLEMEMAFSAVL 699 (712)
Q Consensus 679 ~~~~~~~~~~~~l~~~~~~~~ 699 (712)
.. +. ....|...|...+
T Consensus 516 ~~---~~-~~~~~~~~l~~~~ 532 (538)
T PRK06183 516 AD---AQ-TLGALLAALAALL 532 (538)
T ss_pred eC---HH-HHHHHHHHHHhhc
Confidence 64 22 2344555555444
No 6
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-55 Score=491.22 Aligned_cols=341 Identities=24% Similarity=0.330 Sum_probs=248.4
Q ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcccccee
Q 005134 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118 (712)
Q Consensus 39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~ 118 (712)
|++..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++|+|+.+ |+.+++...+.+.... .
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~l-Gl~~~l~~~~~~~~~~--~ 77 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELV-DLFDELYPLGKPCNTS--S 77 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhc-ChHHHHHhhCccceeE--E
Confidence 345668999999999999999999999999999999999888899999999999999999 9999998876554321 1
Q ss_pred EeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (712)
Q Consensus 119 ~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~ 198 (712)
.| ..|..+...... ...... ........++|..++++|.+++.+.|+ +|+++++|+
T Consensus 78 ~~---~~g~~i~~~~~~-~~~~~~-~~~~~~~~~~q~~le~~L~~~~~~~Gv-------------------~v~~~~~v~ 133 (487)
T PRK07190 78 VW---ANGKFISRQSSW-WEELEG-CLHKHFLMLGQSYVEKLLDDKLKEAGA-------------------AVKRNTSVV 133 (487)
T ss_pred Ee---cCCceEeecccc-CccCCc-CCCCceEecCHHHHHHHHHHHHHHCCC-------------------EEEeCCEEE
Confidence 11 122222111000 000000 011123568999999999999998887 999999999
Q ss_pred EEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecC-ccccccccCCCce
Q 005134 199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPGM 277 (712)
Q Consensus 199 ~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 277 (712)
+++++++++++++. +| .+++|+|||+|||++|.||+++|+++.|......+..+..... ++. ..+..
T Consensus 134 ~l~~~~~~v~v~~~---~g----~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~-----~~~~~ 201 (487)
T PRK07190 134 NIELNQAGCLTTLS---NG----ERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFP-----KVPEI 201 (487)
T ss_pred EEEEcCCeeEEEEC---CC----cEEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCC-----CCcce
Confidence 99999999877664 34 2789999999999999999999999988664444433322211 111 11112
Q ss_pred EEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcc-eEEEeecceechhhhccccc
Q 005134 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEVAEKFLC 356 (712)
Q Consensus 278 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~~~~va~~~~~ 356 (712)
..+ ..+.+..++++.. .+.+.+.+.. ....++.+.+.+.+++.+......+ ++...+.|++..+++++|+.
T Consensus 202 ~~~-~~~~g~~~~~p~~--~~~~r~~~~~-----~~~~~t~~~~~~~l~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~ 273 (487)
T PRK07190 202 IVF-QAETSDVAWIPRE--GEIDRFYVRM-----DTKDFTLEQAIAKINHAMQPHRLGFKEIVWFSQFSVKESVAEHFFI 273 (487)
T ss_pred EEE-EcCCCCEEEEECC--CCEEEEEEEc-----CCCCCCHHHHHHHHHHhcCCCCCceEEEEEEEEeeeCcEehhhcCc
Confidence 222 2233333333332 2233222221 1245677888888887664332333 34455678899999999972
Q ss_pred cCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHH
Q 005134 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427 (712)
Q Consensus 357 ~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~ 427 (712)
.|||||+|||||.++|++|||||+||+||+||+|||+.+++|++.+.+|++|+.||+|+++.++..+...
T Consensus 274 -~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~ 343 (487)
T PRK07190 274 -QDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPVAQGVIETSGEL 343 (487)
T ss_pred -CCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999999999999999999999999999999999999999999988876543
No 7
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=1.4e-53 Score=491.11 Aligned_cols=551 Identities=21% Similarity=0.273 Sum_probs=341.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~ 119 (712)
..++|||||||||+||++|+.|+++ |++|+||||++.+...+++.+|+++|||+|+++ |+.+++.+.+.+..... .
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~l-Gl~d~l~~~g~~~~~~~--~ 106 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAF-GFAERILKEAYWINETA--F 106 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhc-cchHHHHhhcccccceE--E
Confidence 3479999999999999999999995 999999999999888899999999999999999 99999988776543211 1
Q ss_pred eeecCC-CCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134 120 YCTSVT-GPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (712)
Q Consensus 120 ~~~~~~-G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~ 198 (712)
|..... +..+.+.... .+.....++.+...++|..++++|++.+.+.|. +++++++++++
T Consensus 107 ~~~~~~~~~~i~r~~~~--~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~-----------------~v~v~~g~~v~ 167 (634)
T PRK08294 107 WKPDPADPSTIVRTGRV--QDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPT-----------------RLEPDYGREFV 167 (634)
T ss_pred EcCCCccccceeccccc--cccCCCCCCCccEeeCHHHHHHHHHHHHHhcCC-----------------ceEEEeCcEEE
Confidence 111100 1111111100 011111223334678999999999999987763 13789999999
Q ss_pred EEEEcCC---eEEEEEEecc---CCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeec-Cccccccc
Q 005134 199 SVSATDQ---CINVIASFLK---EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDYLL 271 (712)
Q Consensus 199 ~v~~~~~---~v~v~v~~~~---~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~-~~l~~~~~ 271 (712)
+++++++ .|++++++.+ +| ++++++|||||||||++|.||+++|+++.|......+..+.... .++..
T Consensus 168 ~~~~~~~~~~~V~v~l~~~~~~~~g--~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~--- 242 (634)
T PRK08294 168 DLEVDEEGEYPVTVTLRRTDGEHEG--EEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPD--- 242 (634)
T ss_pred EEEECCCCCCCEEEEEEECCCCCCC--ceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCC---
Confidence 9998753 4888887532 23 24689999999999999999999999999877665554433321 12111
Q ss_pred cCCCceEEEEeecCCeEEEEEecCCCC-eEEEEEec--CCCC--CCCCCCCHHHHHHHHHHHhCCCCCcc-eEEEeecce
Q 005134 272 NERPGMLFFIFNTEAIGVLVAHDLKEG-EFILQVPF--YPPQ--QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWV 345 (712)
Q Consensus 272 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~--~~~~--~~~~~~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~ 345 (712)
... ...+...+.+..++++.. .+ .+.+.+.. .+.. ......+.+.+.+.++++++....++ ++.....|.
T Consensus 243 -~~~-~~~~~~~~~g~~~~~P~~--~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w~s~y~ 318 (634)
T PRK08294 243 -IRL-KCAIQSASEGSILLIPRE--GGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAWWSVYE 318 (634)
T ss_pred -cce-EEEEecCCCceEEEEECC--CCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEeEEeccc
Confidence 111 111111233333344432 23 23222221 1111 12245678888888888876433332 233444567
Q ss_pred echhhhccccc--------cCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHH
Q 005134 346 MHAEVAEKFLC--------CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417 (712)
Q Consensus 346 ~~~~va~~~~~--------~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a 417 (712)
+..+++++|.. ..|||||+|||||.++|.+|||||+||+||+||+|||+.+++|.+.+++|++|+.||+|++
T Consensus 319 i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~a 398 (634)
T PRK08294 319 VGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIA 398 (634)
T ss_pred ccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 78899999831 1499999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHH
Q 005134 418 EFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLA 497 (712)
Q Consensus 418 ~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 497 (712)
+.+++.+....+.+..-+.. .. . ...+
T Consensus 399 ~~li~~~~~~~~l~~~~~~~-------~~------------~----------------------------------~~~~ 425 (634)
T PRK08294 399 QELIDFDREWSTMMAAPPKE-------GG------------G----------------------------------VDPA 425 (634)
T ss_pred HHHHHHHHHHHHHhccCCcc-------cc------------c----------------------------------cCHH
Confidence 99998876554443211000 00 0 0001
Q ss_pred HHHHHHHcCCcccccccccccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecC-CCCcceeeeC
Q 005134 498 KLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVL-STEIISTLDL 576 (712)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~-~~~~~St~Dl 576 (712)
.+.+.+.+... | -..++.+|..|.++...... .....-.||.|+|.+.+.+. ++..+-+.|+
T Consensus 426 ~~~~~~~~~~~----~-~sG~~~~Y~~s~l~~~~~~~------------~~~~~~~~G~r~~~~~v~~~~d~~~~~l~~~ 488 (634)
T PRK08294 426 ELQDYFVKHGR----F-TAGTATHYAPSLLTGEATHQ------------DLATGFPIGKRFHSAPVIRLADAKPVHLGHA 488 (634)
T ss_pred HHHHHHHHhhh----h-hcccCcccCCccccCCCCch------------hhccCCCCceeCCCCceeeccCCCchhHhhh
Confidence 12222211110 1 12478889988887432110 01123569999999998752 4445556665
Q ss_pred CCCCcceEEEEEcCCccc-hHHHHHHHHhhhhc------------------CCceEEEEEcCCC-Ccchhhhhhc-----
Q 005134 577 VSGDKVEFLLIIAPVEES-YHLARAALKVAEDF------------------KVPTKVCVLWPAG-TTNEVEFRSA----- 631 (712)
Q Consensus 577 ~~~~~~~f~Ll~~~~~~~-~~~~~aa~~~~~~~------------------g~~~~~~~~~~~~-~~~~~~~~~~----- 631 (712)
+..+ +.|.||++.+... ..........++.+ +.-+.+..|..+. .+.|-.+-+.
T Consensus 489 ~~~~-g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 567 (634)
T PRK08294 489 ATAD-GRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADIDAVIDVRAIFQQPHRELDLEDVPALLLPR 567 (634)
T ss_pred cccC-CCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCCcEEEEEEEecCCCCccchhhCcHhhCCc
Confidence 5332 2599998875321 11222222223222 1225555553221 1111111011
Q ss_pred cccCCCCcccchhhhcccCCccchhhhhcccCC--ceEEEcCCceEEEeeCCCCCCChHHHHHHHHHHhh
Q 005134 632 AELAPWKNYIDVEEVKRSSDSLSWWRICKMTDM--GAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVL 699 (712)
Q Consensus 632 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--gavLVRPDg~VaWr~~~~~~~~~~~~l~~~~~~~~ 699 (712)
....-|.+|..+. ++++ ...+-++.+||..+ +.|+|||||||+|-.. . |....|..-++.++
T Consensus 568 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~gi~~~~g~~vvvRPD~~v~~~~~--l--~~~~~l~~yf~~~~ 631 (634)
T PRK08294 568 KGRFGLTDYEKVF-CADL-SGADIFDLRGIDRDRGAVVVVRPDQYVANVLP--L--DAHAELAAFFAGFL 631 (634)
T ss_pred ccccCccchhhee-cCCC-chhhHHHhhCCCCCceeEEEECCCCceEEEec--C--ccHHHHHHHHHHhc
Confidence 1111133432211 1110 01234466899875 5578899999999875 2 33566777776654
No 8
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-54 Score=485.63 Aligned_cols=332 Identities=25% Similarity=0.361 Sum_probs=243.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~-~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~ 120 (712)
.++||+||||||+||++|+.|+++|++|+||||.+.+. ..+|+..++++++++|+++ |+.+++.+.+.+... ..+
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~l-Gl~~~l~~~~~~~~~-~~~-- 77 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQR-GIADRFLAQGQVAQV-TGF-- 77 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHc-CcHHHHHhcCCcccc-cee--
Confidence 45899999999999999999999999999999998765 4678999999999999999 999999876544321 001
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
. ...++.. ++.. ..+ ....+.|..|+++|.+.+++.|+ +++++++++++
T Consensus 78 ----~---~~~~~~~---~~~~-~~~-~~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~v 126 (488)
T PRK06834 78 ----A---ATRLDIS---DFPT-RHN-YGLALWQNHIERILAEWVGELGV-------------------PIYRGREVTGF 126 (488)
T ss_pred ----e---eEecccc---cCCC-CCC-ccccccHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEE
Confidence 0 0001110 0000 011 23568899999999999998876 99999999999
Q ss_pred EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEE
Q 005134 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (712)
Q Consensus 201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (712)
++++++|++++. +|+ +++|||||+|||++|.||+++|+++.|..+.+.++...+...+. +. ...
T Consensus 127 ~~~~~~v~v~~~---~g~----~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~--------~~-~~~ 190 (488)
T PRK06834 127 AQDDTGVDVELS---DGR----TLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEE--------PE-WGV 190 (488)
T ss_pred EEcCCeEEEEEC---CCC----EEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCC--------CC-cce
Confidence 999999887653 342 68999999999999999999999999887766555554432211 00 011
Q ss_pred EeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccCCc
Q 005134 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360 (712)
Q Consensus 281 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gR 360 (712)
.+.+.....+.+.. ..+.+.+.+.. +........+.+.+.+.+++.++......+......|....+++++|+ +||
T Consensus 191 ~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~r~a~~~~--~gR 266 (488)
T PRK06834 191 HRDALGIHAFGRLE-DEGPVRVMVTE-KQVGATGEPTLDDLREALIAVYGTDYGIHSPTWISRFTDMARQAASYR--DGR 266 (488)
T ss_pred eeCCCceEEEeccC-CCCeEEEEEec-CCCCCCCCCCHHHHHHHHHHhhCCCCccccceeEEeccccceeccccc--CCc
Confidence 12222221222221 12344333221 111222345667777888888775433333334456777888999999 599
Q ss_pred EEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHH
Q 005134 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF 428 (712)
Q Consensus 361 V~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~ 428 (712)
|||+|||||.|+|++|||||+||+||.||+|||+.+++|++.+.+|++|+.||+|+++.++..+....
T Consensus 267 V~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~ 334 (488)
T PRK06834 267 VLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLRNTMAQV 334 (488)
T ss_pred EEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988775444
No 9
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=1.1e-44 Score=392.10 Aligned_cols=350 Identities=27% Similarity=0.440 Sum_probs=253.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~ 122 (712)
++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+.+.+.+.+...+....+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~~~~~~~~~ 79 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRL-GLLDEILARGSPHEVMRIFFYDG 79 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHT-TEHHHHHHHSEEECEEEEEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccc-cchhhhhhhcccccceeeEeecc
Confidence 48999999999999999999999999999999999999999999999999999999 99999998875543322222222
Q ss_pred cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (712)
Q Consensus 123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~ 202 (712)
..+.............+.....+.....+.|..|+++|.+.+++.|+ +++++++++++++
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~~~~ 139 (356)
T PF01494_consen 80 -ISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV-------------------DIRFGTRVVSIEQ 139 (356)
T ss_dssp -TTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE-------------------EEEESEEEEEEEE
T ss_pred -cCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh-------------------hheeeeecccccc
Confidence 11211111111111111111233445678899999999999999887 9999999999999
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCccccccc--ccEEEEEeecCccccccccCCCceEEE
Q 005134 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDL--QKLVSVHFLSKDLGDYLLNERPGMLFF 280 (712)
Q Consensus 203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (712)
+++++++.+.+..+|+ .++++||+||||||++|.||+++++.+.+.... ..++.+.+.. .+..+. .+ .++
T Consensus 140 d~~~~~~~~~~~~~g~--~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~--~~~ 211 (356)
T PF01494_consen 140 DDDGVTVVVRDGEDGE--EETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDS-DLSDPW---ED--HCF 211 (356)
T ss_dssp ETTEEEEEEEETCTCE--EEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEEC-HSHTTT---SC--EEE
T ss_pred cccccccccccccCCc--eeEEEEeeeecccCcccchhhhccccccCcccccccccccccccc-cccccc---cc--ccc
Confidence 9999998888655553 468999999999999999999999876554422 3444444444 333221 11 445
Q ss_pred EeecCCeE-EEEEecC-CCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhcccccc
Q 005134 281 IFNTEAIG-VLVAHDL-KEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC 357 (712)
Q Consensus 281 ~~~~~~~g-~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~ 357 (712)
+..+...+ ++++... ....+++.+++.... ........+.+.+.+...++......++.....|.+...++++|..
T Consensus 212 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 290 (356)
T PF01494_consen 212 IYSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQRVADRWVK- 290 (356)
T ss_dssp EEEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEEEEESSSEE-
T ss_pred cccccccceeEeeccCCccceEEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 55544444 3455543 223455555554432 2222334556666666766655455566777788888888899984
Q ss_pred CCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHH
Q 005134 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL 423 (712)
Q Consensus 358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~ 423 (712)
|||+|+|||||.|+|++|||+|+||+||.+|+++|+.+++|.+.+.+|+.|+++|+++++.+++.
T Consensus 291 -grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 291 -GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp -TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999888999999999999999988764
No 10
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=3.2e-42 Score=377.80 Aligned_cols=341 Identities=24% Similarity=0.327 Sum_probs=253.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~-~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~ 121 (712)
.+||+||||||+||++|+.|+++|++|+||||. ......+++..|+++++++|+++ |+.+.+...+.+..... ..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~i~~~~~~~~~~~---~~ 77 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERL-GLWDRLEALGVPPLHVM---VV 77 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHc-CChhhhhhccCCceeeE---EE
Confidence 489999999999999999999999999999998 45567779999999999999999 99788888665442211 11
Q ss_pred ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (712)
Q Consensus 122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~ 201 (712)
...+.....++.... ..+.....++|..|...|.+++.+.+. ++++++++|+.++
T Consensus 78 -~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~~~~~~~~~------------------v~~~~~~~v~~~~ 132 (387)
T COG0654 78 -DDGGRRLLIFDAAEL------GRGALGYVVPRSDLLNALLEAARALPN------------------VTLRFGAEVEAVE 132 (387)
T ss_pred -ecCCceeEEeccccc------CCCcceEEeEhHHHHHHHHHHHhhCCC------------------cEEEcCceEEEEE
Confidence 112221111221111 113345789999999999999998763 5999999999999
Q ss_pred EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccC-CCcccccccccEEEEEeecCccccccccCCCceEEE
Q 005134 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG-IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (712)
Q Consensus 202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lg-i~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (712)
++++.|++++.. +|+ +++|||||||||.+|.||++++ ....+..+.+.++...+... .......+.
T Consensus 133 ~~~~~v~v~l~~--dG~----~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~-------~~~~~~~~~ 199 (387)
T COG0654 133 QDGDGVTVTLSF--DGE----TLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPE-------EPHEGRAGE 199 (387)
T ss_pred EcCCceEEEEcC--CCc----EEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecC-------CCCCCeEEE
Confidence 999999877763 452 8999999999999999999999 55555567777776665542 123345555
Q ss_pred EeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCC--CCcceEE-Eeecceechhhhcccccc
Q 005134 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVI-DIKPWVMHAEVAEKFLCC 357 (712)
Q Consensus 281 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~--~~~~~i~-~~~~w~~~~~va~~~~~~ 357 (712)
.+.+.....+++........+|..+ ....+....++.+.+.+.+.+.++.. ...+... ....|++....+++|..
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~- 277 (387)
T COG0654 200 RFTHAGPFALLPLPDNRSSVVWSLP-PGPAEDLQGLSDEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRR- 277 (387)
T ss_pred EecCCCceEEEecCCCceeEEEECC-hhhHHHHhcCCHHHHHHHHHHhcCcccccceEEEccccccccccchhhhheec-
Confidence 5666654445554422233333332 12233455677777777888888876 3323332 23356778899999994
Q ss_pred CCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHH
Q 005134 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF 428 (712)
Q Consensus 358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~ 428 (712)
+||+|+|||||.|+|++|||+|+||+||.+|+|+|++..++..++.+|+.|+++|++.+..++..+....
T Consensus 278 -~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~ 347 (387)
T COG0654 278 -GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALG 347 (387)
T ss_pred -CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987433389999999999999999998876433
No 11
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=5.2e-42 Score=378.13 Aligned_cols=341 Identities=18% Similarity=0.201 Sum_probs=232.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCceeecCHhHHHHHHhhhcHHHHHHhcC-CCccc
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDL 114 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~------~~ra~~i~~rtmeilr~l~Gl~d~l~~~~-~~~~~ 114 (712)
.++||+||||||+||++|+.|+++|++|+||||++.+.. ..++..|+++++++|+++ |+++++.+.+ .+...
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~l-Gl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRL-GVWQDILARRASCYHG 80 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHc-CCchhhhhhcCccccE
Confidence 358999999999999999999999999999999987543 237778999999999999 9999987653 34322
Q ss_pred cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (712)
Q Consensus 115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g 194 (712)
. .+... . ....+.... ... ..+...+.+.|..|+++|.+.+.+.+. ++++++
T Consensus 81 ~---~~~~~-~--~~~~~~~~~-~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------v~i~~~ 132 (400)
T PRK08013 81 M---EVWDK-D--SFGRIAFDD-QSM---GYSHLGHIIENSVIHYALWQKAQQSSD------------------ITLLAP 132 (400)
T ss_pred E---EEEeC-C--CCceEEEcc-ccc---CCCccEEEEEhHHHHHHHHHHHhcCCC------------------cEEEcC
Confidence 1 11111 1 011111100 000 112223578999999999999887532 499999
Q ss_pred cEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCC
Q 005134 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274 (712)
Q Consensus 195 ~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (712)
+++++++++++++++++. +|+ +++|||||||||++|.||+++++++.+..+....+...+.... ..
T Consensus 133 ~~v~~i~~~~~~v~v~~~---~g~----~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~-------~~ 198 (400)
T PRK08013 133 AELQQVAWGENEAFLTLK---DGS----MLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEE-------PH 198 (400)
T ss_pred CeeEEEEecCCeEEEEEc---CCC----EEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccC-------CC
Confidence 999999999999887764 443 6899999999999999999999988776655554444443211 11
Q ss_pred CceEEEEeecCCeEEEEEecCCC-CeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEEE-eecceechhhh
Q 005134 275 PGMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVA 351 (712)
Q Consensus 275 ~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~va 351 (712)
....+..+.++....+++.+.+. ..+++..+ +.. +.....+.+.+.+.+...++......++.+ ...|+....++
T Consensus 199 ~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~ 276 (400)
T PRK08013 199 DAVARQVFHGDGILAFLPLSDPHLCSIVWSLS--PEEAQRMQQAPEEEFNRALAIAFDNRLGLCELESERQVFPLTGRYA 276 (400)
T ss_pred CCEEEEEEcCCCCEEEEECCCCCeEEEEEEcC--HHHHHHHHcCCHHHHHHHHHHHHhHhhCceEecCCccEEecceeec
Confidence 22334444444444444443221 12333322 111 111233455555555544432222333332 22455666788
Q ss_pred ccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHH-cCCC--chhhHHHHHHhhhHHHHHHHHHHHHHH
Q 005134 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIA--PASILNTYETERKPIAEFNTALSVQNF 428 (712)
Q Consensus 352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl-~g~a--~~~lL~sY~~eRrp~a~~~~~~s~~~~ 428 (712)
++|+ .|||+|+|||||.|+|++|||||+||+||.+|+|+|+.++ ++.+ ...+|++|+++|++++..++..+....
T Consensus 277 ~~~~--~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~ 354 (400)
T PRK08013 277 RQFA--AHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFR 354 (400)
T ss_pred cccc--CCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 5999999999999999999999999999999999999876 3433 235899999999999988887654433
Q ss_pred H
Q 005134 429 R 429 (712)
Q Consensus 429 ~ 429 (712)
+
T Consensus 355 ~ 355 (400)
T PRK08013 355 D 355 (400)
T ss_pred H
Confidence 3
No 12
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=2.3e-40 Score=364.17 Aligned_cols=339 Identities=20% Similarity=0.245 Sum_probs=228.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~--~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~ 120 (712)
++||+||||||+||++|+.|+++|++|+||||++.+ ...+++..++++++++|+++ |+.+++.+.+.+.... .+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~---~~ 77 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREA-GVGERMDREGLVHDGI---EL 77 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHc-CChHHHHhcCCccCcE---EE
Confidence 589999999999999999999999999999999864 34567888999999999999 9999998877654322 12
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
.. .|+ ...++.... ..+.....++|..|.+.|++.+.+.|+ +++++++++++
T Consensus 78 ~~--~g~-~~~~~~~~~------~~~~~~~~~~~~~l~~~Ll~~a~~~gv-------------------~v~~~~~v~~i 129 (392)
T PRK08243 78 RF--DGR-RHRIDLTEL------TGGRAVTVYGQTEVTRDLMAARLAAGG-------------------PIRFEASDVAL 129 (392)
T ss_pred EE--CCE-EEEeccccc------cCCceEEEeCcHHHHHHHHHHHHhCCC-------------------eEEEeeeEEEE
Confidence 11 232 222222110 111223456788999999988877776 99999999999
Q ss_pred EE-cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccc--ccc-ccEEEEEeecCccccccccCCCc
Q 005134 201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE--KDL-QKLVSVHFLSKDLGDYLLNERPG 276 (712)
Q Consensus 201 ~~-~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~--~~~-~~~~~~~~~~~~l~~~~~~~~~~ 276 (712)
++ ++++++|++. .+|+ +.+++|||||||||++|.||++++...... ..+ ..+..+.. +.. ....
T Consensus 130 ~~~~~~~~~V~~~--~~G~--~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~- 197 (392)
T PRK08243 130 HDFDSDRPYVTYE--KDGE--EHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILA---EAP----PVSD- 197 (392)
T ss_pred EecCCCceEEEEE--cCCe--EEEEEeCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeC---CCC----CCCC-
Confidence 87 6777777663 2453 458999999999999999999997643110 000 11111110 100 1111
Q ss_pred eEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCC----CcceEEEeecceechhhhc
Q 005134 277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL----SDIDVIDIKPWVMHAEVAE 352 (712)
Q Consensus 277 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~----~~~~i~~~~~w~~~~~va~ 352 (712)
..++...+....++...+.+...+++.++ .....+.++++...+.+++.++... ....+.....|++...+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (392)
T PRK08243 198 ELIYANHERGFALCSMRSPTRSRYYLQCP---LDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAE 274 (392)
T ss_pred ceEEeeCCCceEEEecCCCCcEEEEEEec---CCCCcccCChhHHHHHHHHhcCcccccccccCccccccceeeeeceec
Confidence 12222222222222222211113333333 1223345566666666666655321 1112222334556667788
Q ss_pred cccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (712)
Q Consensus 353 ~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (712)
+|. .|||+|+|||||.++|++|||||+||+||.+|+|+|+.++++. .+++|++|+++|+|++..+++.+....+.+
T Consensus 275 ~~~--~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~-~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~ 350 (392)
T PRK08243 275 PMQ--YGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREG-DTALLDAYSATALRRVWKAERFSWWMTSML 350 (392)
T ss_pred cce--eCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887 4999999999999999999999999999999999999988763 689999999999999999888876655443
No 13
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=2.2e-40 Score=368.85 Aligned_cols=343 Identities=22% Similarity=0.266 Sum_probs=235.0
Q ss_pred cCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCCCC------------CCceeecCHhHHHHHHhhhcHHHHHHh
Q 005134 44 VPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFST------------HPQAHFINNRYALVFRKLDGLAEEIER 107 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar----~Gi~v~lvEr~~~~~~------------~~ra~~i~~rtmeilr~l~Gl~d~l~~ 107 (712)
+||+||||||+||++|+.|++ +|++|+||||++.+.. .+|+..|+++++++|+++ |+++++.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l-G~~~~l~~ 79 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI-GAWDHIQS 79 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc-Cchhhhhh
Confidence 689999999999999999999 8999999999654432 358999999999999999 99999977
Q ss_pred cC-CCccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCcccccccccc
Q 005134 108 SQ-PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLL 186 (712)
Q Consensus 108 ~~-~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~ 186 (712)
.. .+... +.+. ...+.....++.. . ..+...+.++|..|+..|.+.+.+.+.
T Consensus 80 ~~~~~~~~---~~~~-~~~~~~~~~~~~~--~-----~~~~~~~~i~~~~l~~~L~~~~~~~~~---------------- 132 (437)
T TIGR01989 80 DRIQPFGR---MQVW-DGCSLALIRFDRD--N-----GKEDMACIIENDNIQNSLYNRLQEYNG---------------- 132 (437)
T ss_pred hcCCceee---EEEe-cCCCCceEEeecC--C-----CCCceEEEEEHHHHHHHHHHHHHhCCC----------------
Confidence 54 33322 1111 1112111111110 0 011224578999999999999887651
Q ss_pred ccceEEeCcEEEEEEEc-------CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEE
Q 005134 187 QGREILMGHECVSVSAT-------DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV 259 (712)
Q Consensus 187 ~~~~v~~g~~v~~v~~~-------~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~ 259 (712)
.+++++++++|++++++ +++|++++. +|+ +++|||||||||++|.||+++|+++.|..+.+..+..
T Consensus 133 ~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~---~g~----~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~ 205 (437)
T TIGR01989 133 DNVKILNPARLISVTIPSKYPNDNSNWVHITLS---DGQ----VLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVA 205 (437)
T ss_pred CCeEEecCCeeEEEEeccccccCCCCceEEEEc---CCC----EEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEE
Confidence 01499999999999752 456666653 453 7999999999999999999999999988766665554
Q ss_pred EeecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhC---------
Q 005134 260 HFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG--------- 330 (712)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g--------- 330 (712)
.+.... ...+...+..|.+++...+++...+...+++..+.. ........+++.+.+.+.+.++
T Consensus 206 ~v~~~~------~~~~~~~~~~f~~~g~~~~lPl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 278 (437)
T TIGR01989 206 TLKLEE------ATENDVAWQRFLPTGPIALLPLPDNNSTLVWSTSPE-EALRLLSLPPEDFVDALNAAFDLGYSDHPYS 278 (437)
T ss_pred EEEccc------CCCCCeEEEEECCCCCEEEeECCCCCEEEEEeCCHH-HHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence 443211 112234455566665555555543323344433210 0111223455666666655441
Q ss_pred ---------------CCC--------Cc---ceEE--EeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhH
Q 005134 331 ---------------WEL--------SD---IDVI--DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTG 382 (712)
Q Consensus 331 ---------------~~~--------~~---~~i~--~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~g 382 (712)
... .. .++. ....|++....+++|. .+||+|+|||||.++|.+|||||+|
T Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~rv~l~GDAAH~~~P~~GqG~n~~ 356 (437)
T TIGR01989 279 YLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYV--TKRVALVGDAAHRVHPLAGQGVNLG 356 (437)
T ss_pred cccccccccccccccccccccccccccCchhheeecccceeEEecccchhhcc--CCCEEEEchhhcCCCCChhhhHHHH
Confidence 100 00 1111 1235666777889998 4999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCC---chhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005134 383 VQDAHNLAWKIASVLKDIA---PASILNTYETERKPIAEFNTALSVQNFRA 430 (712)
Q Consensus 383 i~DA~~LawkLa~vl~g~a---~~~lL~sY~~eRrp~a~~~~~~s~~~~~~ 430 (712)
|+||.+|+|+|++++++.. .+.+|++|+.+|+++++.++..+....+.
T Consensus 357 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l 407 (437)
T TIGR01989 357 FGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVLLGLVDKLHKL 407 (437)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875432 35799999999999999998877654443
No 14
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=1.8e-40 Score=366.65 Aligned_cols=342 Identities=20% Similarity=0.251 Sum_probs=232.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCC----CCCCceeecCHhHHHHHHhhhcHHHHHHhc-CCCcccc
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAF----STHPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW 115 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~-~~~----~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~-~~~~~~~ 115 (712)
..+||+||||||+||++|+.|+++|++|+|||++ +.. ...+++..|+++++++|+++ |+++++.+. +.+...
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~- 80 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNL-GAWQGIEARRAAPYIA- 80 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhC-CchhhhhhhhCCcccE-
Confidence 4689999999999999999999999999999997 322 12468899999999999999 999999864 344321
Q ss_pred ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc
Q 005134 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (712)
Q Consensus 116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~ 195 (712)
+..... .+ +....... .+. ..+.....+.+..|++.|++.+.+.+. +++++++
T Consensus 81 --~~~~~~-~~--~~~~~~~~-~~~---~~~~~g~~~~~~~l~~~L~~~~~~~~~------------------v~v~~~~ 133 (405)
T PRK08850 81 --MEVWEQ-DS--FARIEFDA-ESM---AQPDLGHIVENRVIQLALLEQVQKQDN------------------VTLLMPA 133 (405)
T ss_pred --EEEEeC-CC--CceEEEec-ccc---CCCccEEEEEHHHHHHHHHHHHhcCCC------------------eEEEcCC
Confidence 111111 11 11111110 000 111123456788899999998876532 4999999
Q ss_pred EEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCC
Q 005134 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (712)
Q Consensus 196 ~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (712)
++++++++++++++++. +|+ +++||+||||||++|.||++++++..+..+.+..+...+.... ...
T Consensus 134 ~v~~i~~~~~~~~v~~~---~g~----~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~ 199 (405)
T PRK08850 134 RCQSIAVGESEAWLTLD---NGQ----ALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVD-------PHN 199 (405)
T ss_pred eeEEEEeeCCeEEEEEC---CCC----EEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccC-------CCC
Confidence 99999999888877764 453 6899999999999999999999987765554444444443221 122
Q ss_pred ceEEEEeecCCeEEEEEecCCC-CeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEE-eecceechhhhcc
Q 005134 276 GMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEK 353 (712)
Q Consensus 276 ~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~va~~ 353 (712)
...+.+|.++....+++...+. ..+++..+... .+.....+.+.+.+.+.+.++.....+++.. ...|++....+++
T Consensus 200 ~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 278 (405)
T PRK08850 200 SVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLR-AEALLAMSDEQFNKALTAEFDNRLGLCEVVGERQAFPLKMRYARD 278 (405)
T ss_pred CEEEEEEcCCCceEEEECCCCCeEEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHhhhhCcEEEcccccEEecceeeccc
Confidence 3445556665554555543221 12333322110 1112234445555556665543322333322 2245566677888
Q ss_pred ccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc-CC--CchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIAEFNTALSVQNFR 429 (712)
Q Consensus 354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g~--a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (712)
|. +|||+|+|||||.|+|++|||||+||+||.+|+|+|+.+.+ +. +.+.+|++|+.+|++++..++..+....+
T Consensus 279 ~~--~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~ 355 (405)
T PRK08850 279 FV--RERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRD 355 (405)
T ss_pred cc--cCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88 59999999999999999999999999999999999998773 32 24689999999999999998887754443
No 15
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=1.1e-39 Score=358.52 Aligned_cols=347 Identities=19% Similarity=0.210 Sum_probs=228.8
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~ 119 (712)
++.++||+||||||+||++|+.|+++|++|+||||++.+...+++..|+++++++|+++ |+.+.+.+.+..... .+.
T Consensus 2 ~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~l-Gl~~~~~~~~~~~~~--~~~ 78 (388)
T PRK07045 2 KNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAM-GLLDDVFAAGGLRRD--AMR 78 (388)
T ss_pred CCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHc-CCHHHHHhccccccc--ceE
Confidence 35668999999999999999999999999999999999887778888999999999999 999999876543211 111
Q ss_pred eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (712)
Q Consensus 120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~ 199 (712)
. ...|+.+...+..... ... ....++|..|+++|++++...+. +++++++++++
T Consensus 79 ~--~~~g~~~~~~~~~~~~-----~~g-~~~~i~r~~l~~~L~~~~~~~~g------------------v~i~~~~~v~~ 132 (388)
T PRK07045 79 L--YHDKELIASLDYRSAS-----ALG-YFILIPCEQLRRLLLAKLDGLPN------------------VRLRFETSIER 132 (388)
T ss_pred E--ecCCcEEEEecCCccc-----cCC-ceEEccHHHHHHHHHHHHhcCCC------------------eeEEeCCEEEE
Confidence 1 1245544433321110 001 12457899999999999865432 49999999999
Q ss_pred EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcc-cCCCcccccccccEEEEEeecCccccccccCCCceE
Q 005134 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKL-VGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (712)
Q Consensus 200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~-lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (712)
++++++++.+.+.+. +|+ ++++|+||||||++|.||++ ++++..+..+........+.... .. +...
T Consensus 133 i~~~~~~~~~~v~~~-~g~----~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ 200 (388)
T PRK07045 133 IERDADGTVTSVTLS-DGE----RVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTD---SV----RECN 200 (388)
T ss_pred EEECCCCcEEEEEeC-CCC----EEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccC---Cc----cccc
Confidence 999887754445432 443 68999999999999999996 46554333222222222221111 00 1111
Q ss_pred EEEeec-CCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCc-ceEE-Eee---cceechhhhc
Q 005134 279 FFIFNT-EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-IDVI-DIK---PWVMHAEVAE 352 (712)
Q Consensus 279 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~-~~i~-~~~---~w~~~~~va~ 352 (712)
..++.+ ....++++.......+++.++.........+.+.+.+.+.+.+.++....+ ++.. ... .+++....++
T Consensus 201 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (388)
T PRK07045 201 RLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLD 280 (388)
T ss_pred eEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeecCccccc
Confidence 122233 222333443322223443333211111122334556666666665433211 1111 111 2344556678
Q ss_pred cccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC-CchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFR 429 (712)
Q Consensus 353 ~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~-a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (712)
+|. .|||+|+|||||.|+|++|||+|+||+||++|+|+|+.++++. ..+++|++|+++|+|++..++..+....+
T Consensus 281 ~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~ 356 (388)
T PRK07045 281 RYH--KRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALAT 356 (388)
T ss_pred ccc--CCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhh
Confidence 887 4999999999999999999999999999999999999887654 45789999999999999988887654433
No 16
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.7e-39 Score=354.94 Aligned_cols=331 Identities=17% Similarity=0.215 Sum_probs=231.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF----STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~----~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~ 119 (712)
+||+||||||+|+++|+.|+++|++|+|||+.+.. ...+++..++++++++|+++ |+++.+.+.+.+.... .
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~---~ 77 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSI-DIWEELEKFVAEMQDI---Y 77 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHC-CcHHHHHhhcCCCcEE---E
Confidence 68999999999999999999999999999998532 23478999999999999999 9999987766554322 1
Q ss_pred eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (712)
Q Consensus 120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~ 199 (712)
..+..|.....++.. ..+...+.+.|..|++.|++++.+.+. +++++++++++
T Consensus 78 -~~~~~g~~~~~~~~~--------~~~~~g~~v~r~~L~~~L~~~~~~~~~------------------v~~~~~~~v~~ 130 (374)
T PRK06617 78 -VVDNKASEILDLRND--------ADAVLGYVVKNSDFKKILLSKITNNPL------------------ITLIDNNQYQE 130 (374)
T ss_pred -EEECCCceEEEecCC--------CCCCcEEEEEHHHHHHHHHHHHhcCCC------------------cEEECCCeEEE
Confidence 222334433332211 111124678999999999999988763 48999999999
Q ss_pred EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (712)
Q Consensus 200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (712)
+.+++++|++++. ++ +++||+||||||++|.||+.++++..+..+ +..+.+..... .......+
T Consensus 131 i~~~~~~v~v~~~---~~-----~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~-------~~~~~~~~ 194 (374)
T PRK06617 131 VISHNDYSIIKFD---DK-----QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHE-------KPHENCAM 194 (374)
T ss_pred EEEcCCeEEEEEc---CC-----EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEecc-------CCCCCEEE
Confidence 9999999877663 32 689999999999999999999887654443 44444333211 11222334
Q ss_pred EEeecCCeEEEEEecCCC-CeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEE-Eeecceechhhhcccccc
Q 005134 280 FIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLCC 357 (712)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~va~~~~~~ 357 (712)
..|.+.+...+++...+. ..++|..+ ..........+.+.+.+++...++.....+.+. ....|++....+++|.
T Consensus 195 ~~~~~~g~~~~lPl~~~~~~~~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~-- 271 (374)
T PRK06617 195 EHFLPLGPFALLPLKDQYASSVIWSTS-SDQAALIVNLPVEEVRFLTQRNAGNSLGKITIDSEISSFPLKARIANRYF-- 271 (374)
T ss_pred EEecCCCCEEEeECCCCCeEEEEEeCC-HHHHHHHHcCCHHHHHHHHHHhhchhcCceeeccceeEEEeeeeecccee--
Confidence 455555555555554221 12233322 000011123344555556666555433333332 2456777777889998
Q ss_pred CCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (712)
Q Consensus 358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (712)
+|||+|+|||||.|+|++|||+|+||+||.+|++.|. ...+|++|+++|++....++..+....+.+
T Consensus 272 ~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~-------~~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f 338 (374)
T PRK06617 272 HNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVS-------NNGTLQEYQKLRQEDNFIMYKLTDELNNIF 338 (374)
T ss_pred cCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHc-------CcchHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999883 136899999999999999988776544433
No 17
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.2e-39 Score=357.39 Aligned_cols=335 Identities=18% Similarity=0.241 Sum_probs=231.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--C----CCceeecCHhHHHHHHhhhcHHHHHHhc-CCCcccc
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--T----HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW 115 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~--~----~~ra~~i~~rtmeilr~l~Gl~d~l~~~-~~~~~~~ 115 (712)
.+||+||||||+||++|+.|++.|++|+|||+.+... . ..++..|+++++++|++| |+++.+.+. ..+....
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~~~~~~~~~~~~~ 81 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESL-GAWSSIVAMRVCPYKRL 81 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHC-CCchhhhHhhCCccceE
Confidence 4899999999999999999999999999999886321 1 235678999999999999 999998763 3333211
Q ss_pred ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc
Q 005134 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (712)
Q Consensus 116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~ 195 (712)
. .+... ... ..+.. .++ ..+...+.+.+..|...|++++.+.+. +++++++
T Consensus 82 ~--~~~~~-~~~--~~~~~---~~~---~~~~~g~~i~~~~l~~~L~~~~~~~~~------------------i~i~~~~ 132 (384)
T PRK08849 82 E--TWEHP-ECR--TRFHS---DEL---NLDQLGYIVENRLIQLGLWQQFAQYPN------------------LTLMCPE 132 (384)
T ss_pred E--EEeCC-Cce--EEecc---ccc---CCCccEEEEEcHHHHHHHHHHHHhCCC------------------eEEECCC
Confidence 1 11110 011 01110 000 001112346667889999988876542 4999999
Q ss_pred EEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCC
Q 005134 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (712)
Q Consensus 196 ~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (712)
++++++++++++++++. +|+ +++||+||||||++|.||+++++...+..+.+..+.+.+... ....
T Consensus 133 ~v~~~~~~~~~~~v~~~---~g~----~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~-------~~~~ 198 (384)
T PRK08849 133 KLADLEFSAEGNRVTLE---SGA----EIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETE-------QPQQ 198 (384)
T ss_pred ceeEEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcC-------CCCC
Confidence 99999999999887775 453 789999999999999999999988776655555444433321 1122
Q ss_pred ceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccc
Q 005134 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKF 354 (712)
Q Consensus 276 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~ 354 (712)
...+..+.+.+...+++.......++|..+ +.. ......+++...+.+.+.++.....+++.....|++....+++|
T Consensus 199 ~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 276 (384)
T PRK08849 199 DITWQQFTPSGPRSFLPLCGNQGSLVWYDS--PKRIKQLSAMNPEQLRSEILRHFPAELGEIKVLQHGSFPLTRRHAQQY 276 (384)
T ss_pred CEEEEEeCCCCCEEEeEcCCCceEEEEECC--HHHHHHHHcCCHHHHHHHHHHHhhhhhCcEEeccceEeeccccccchh
Confidence 334444555444444555433333444321 110 11123456666777777666554455555556677777789999
Q ss_pred cccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHH
Q 005134 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427 (712)
Q Consensus 355 ~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~ 427 (712)
. .|||+|+|||||.|+|++|||+|+||+||.+|+..|.. ++...+.+|+.|+.+|+++...++..+...
T Consensus 277 ~--~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~--~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~ 345 (384)
T PRK08849 277 V--KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEK--QGVLNDASFARYERRRRPDNLLMQTGMDLF 345 (384)
T ss_pred c--cCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8 59999999999999999999999999999999998864 344568999999999999998877655433
No 18
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.8e-39 Score=358.64 Aligned_cols=347 Identities=21% Similarity=0.240 Sum_probs=232.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~--~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~ 119 (712)
.++||+||||||+||++|+.|+++|++|+||||++.+.. .+++..++++++++|+++ |+.+++...+.+... +.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~---~~ 92 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGI-GVWEKILPQIGKFRQ---IR 92 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHC-ChhhhhHhhcCCccE---EE
Confidence 358999999999999999999999999999999987643 467889999999999999 999998876655421 11
Q ss_pred eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (712)
Q Consensus 120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~ 199 (712)
+ .+..+.....+... +.. .... .+...+..|.+.|++++.+.+. +++++++++++
T Consensus 93 ~-~~~~~~~~~~~~~~---~~~--~~~~-~~~~~~~~l~~~L~~~~~~~~~------------------v~i~~~~~v~~ 147 (415)
T PRK07364 93 L-SDADYPGVVKFQPT---DLG--TEAL-GYVGEHQVLLEALQEFLQSCPN------------------ITWLCPAEVVS 147 (415)
T ss_pred E-EeCCCCceeeeccc---cCC--CCcc-EEEEecHHHHHHHHHHHhcCCC------------------cEEEcCCeeEE
Confidence 1 12222222111110 000 0011 1222334688888888877532 49999999999
Q ss_pred EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (712)
Q Consensus 200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (712)
++++++++++++.. ++. +.+++||+||||||.+|.||+.+++...+..+++..+...+..... .....+
T Consensus 148 v~~~~~~~~v~~~~--~~~--~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 216 (415)
T PRK07364 148 VEYQQDAATVTLEI--EGK--QQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAP-------HNDIAY 216 (415)
T ss_pred EEecCCeeEEEEcc--CCc--ceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCC-------CCCEEE
Confidence 99999988877752 222 2479999999999999999999998887776666655554433210 111122
Q ss_pred EEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEE-EeecceechhhhccccccC
Q 005134 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLCCY 358 (712)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~va~~~~~~~ 358 (712)
..+.+....++++.+.+...+++..+.. ........+.+...+.+++.++.....++.. ....|++....+++|. .
T Consensus 217 ~~~~~~g~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 293 (415)
T PRK07364 217 ERFWPSGPFAILPLPGNRCQIVWTAPHA-QAKALLALPEAEFLAELQQRYGDQLGKLELLGDRFLFPVQLMQSDRYV--Q 293 (415)
T ss_pred EEecCCCCeEEeECCCCCEEEEEECCHH-HHHHHHCCCHHHHHHHHHHHhhhhhcCceecCCCceecchhhhhhhhc--C
Confidence 2222333334445443222333332210 0011223454555566665554332333332 2234666666788887 5
Q ss_pred CcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc-CC--CchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIAEFNTALSVQNFRAA 431 (712)
Q Consensus 359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g~--a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (712)
|||+|+|||||.++|++|||||+||+||++|+|+|...++ +. ....+|+.|+++|++++..++..+....+.+
T Consensus 294 ~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~ 369 (415)
T PRK07364 294 HRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLF 369 (415)
T ss_pred CcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998763 22 2358999999999999998887776544433
No 19
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=3e-39 Score=357.05 Aligned_cols=343 Identities=17% Similarity=0.207 Sum_probs=232.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--------CCCCceeecCHhHHHHHHhhhcHHHHHHhc-CCCcc
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--------STHPQAHFINNRYALVFRKLDGLAEEIERS-QPPVD 113 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~--------~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~-~~~~~ 113 (712)
.+||+||||||+||++|+.|+++|++|+||||.+.. ...+++..++++++++|+++ |+++.+.+. ..+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~ 80 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL-GAWDGIAARRASPYS 80 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC-ChhhhhhHhhCccce
Confidence 479999999999999999999999999999998731 23467888999999999999 999998764 33332
Q ss_pred ccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEe
Q 005134 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (712)
Q Consensus 114 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 193 (712)
. +.. .+..+.....++. .+. ..+.....+.+..|.+.|.+.+.+.++ ++++
T Consensus 81 ~---~~~-~~~~~~~~~~~~~---~~~---~~~~~g~~i~~~~l~~~L~~~~~~~gv-------------------~v~~ 131 (405)
T PRK05714 81 E---MQV-WDGSGTGQIHFSA---ASV---HAEVLGHIVENRVVQDALLERLHDSDI-------------------GLLA 131 (405)
T ss_pred e---EEE-EcCCCCceEEecc---ccc---CCCccEEEEEhHHHHHHHHHHHhcCCC-------------------EEEc
Confidence 1 111 1222221111110 000 112223467888999999999887766 9999
Q ss_pred CcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccC
Q 005134 194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273 (712)
Q Consensus 194 g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 273 (712)
++++++++++++++++++. +|+ +++||+||+|||++|.||+.++++..+..+....+...+... ..
T Consensus 132 ~~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~-------~~ 197 (405)
T PRK05714 132 NARLEQMRRSGDDWLLTLA---DGR----QLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCS-------EP 197 (405)
T ss_pred CCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcC-------CC
Confidence 9999999999998877654 442 689999999999999999999987765554444433333211 11
Q ss_pred CCceEEEEeecCCeEEEEEecCCC-CeEEE-EEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcc-eEEEeecceechh
Q 005134 274 RPGMLFFIFNTEAIGVLVAHDLKE-GEFIL-QVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAE 349 (712)
Q Consensus 274 ~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~-~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~~~~ 349 (712)
.....+..+.+.....+++..... ..|.. .....+.. ......+.+.+.+.+.+.++....++ .......|++...
T Consensus 198 ~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (405)
T PRK05714 198 HRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQR 277 (405)
T ss_pred CCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEEeccee
Confidence 223344445665555555543221 22321 11111111 11122344555555555544322222 1122234666677
Q ss_pred hhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHH-cC--CCchhhHHHHHHhhhHHHHHHHHHHHH
Q 005134 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KD--IAPASILNTYETERKPIAEFNTALSVQ 426 (712)
Q Consensus 350 va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl-~g--~a~~~lL~sY~~eRrp~a~~~~~~s~~ 426 (712)
.+++|. +|||+|+|||||.|+|++|||+|+||+||.+|+|+|+... .| .+.+.+|+.|+++|++++..++..+..
T Consensus 278 ~~~~~~--~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~ 355 (405)
T PRK05714 278 HAKRYV--EPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEG 355 (405)
T ss_pred ehhhhc--cCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788998 5999999999999999999999999999999999998765 34 245689999999999999999988876
Q ss_pred HHHHh
Q 005134 427 NFRAA 431 (712)
Q Consensus 427 ~~~~~ 431 (712)
+.+.+
T Consensus 356 ~~~~~ 360 (405)
T PRK05714 356 FERLF 360 (405)
T ss_pred HHHHH
Confidence 55544
No 20
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=4.4e-39 Score=353.84 Aligned_cols=341 Identities=20% Similarity=0.304 Sum_probs=236.2
Q ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcccccee
Q 005134 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118 (712)
Q Consensus 39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~ 118 (712)
|++..+||+||||||+||++|+.|+++|++|+||||++.+. .+++..++++++++|+++ |+++.+...+.+... .
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~l-gl~~~~~~~~~~~~~---~ 77 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERL-GLWARLAPHAAPLQS---M 77 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHh-CchhhhHhhcceeeE---E
Confidence 45677999999999999999999999999999999998664 367888999999999999 999999876655432 1
Q ss_pred EeeecCCCCeeee--ecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcE
Q 005134 119 IYCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE 196 (712)
Q Consensus 119 ~~~~~~~G~~l~~--~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~ 196 (712)
.+. +..|..+.. ... ...+. ......+.+++..|++.|.+.+.+.+. +. +++++
T Consensus 78 ~~~-~~~g~~~~~~~~~~-~~~~~---~~~~~g~~i~~~~l~~~L~~~~~~~~~------------------~~-~~~~~ 133 (388)
T PRK07494 78 RIV-DATGRLIRAPEVRF-RAAEI---GEDAFGYNIPNWLLNRALEARVAELPN------------------IT-RFGDE 133 (388)
T ss_pred EEE-eCCCCCCCCceEEE-cHHhc---CCCccEEEeEhHHHHHHHHHHHhcCCC------------------cE-EECCe
Confidence 121 223322210 000 00000 011113568899999999999888764 24 88999
Q ss_pred EEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCc
Q 005134 197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG 276 (712)
Q Consensus 197 v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (712)
|++++++++++++++. +|+ +++||+||+|||.+|.||+.++++..+..+.+..+.+.+... . ....
T Consensus 134 v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~-~------~~~~ 199 (388)
T PRK07494 134 AESVRPREDEVTVTLA---DGT----TLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHS-R------PHQN 199 (388)
T ss_pred eEEEEEcCCeEEEEEC---CCC----EEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEecc-C------CCCC
Confidence 9999999999877653 342 689999999999999999999998776655555554444321 1 1122
Q ss_pred eEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEE-Eeecceechhhhcccc
Q 005134 277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFL 355 (712)
Q Consensus 277 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~va~~~~ 355 (712)
..+.++.+.+..++++.+.+...+++..+.. ........+.+.+.+.+.+.++.....++.. ....|++....+++|.
T Consensus 200 ~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 278 (388)
T PRK07494 200 VSTEFHTEGGPFTQVPLPGRRSSLVWVVRPA-EAERLLALSDAALSAAIEERMQSMLGKLTLEPGRQAWPLSGQVAHRFA 278 (388)
T ss_pred EEEEEeCCCCcEEEEECCCCcEEEEEECCHH-HHHHHHcCCHHHHHHHHHHHHhhhcCCeEEccCCcEeechHHHHHhhc
Confidence 3334444554444455432222233322211 0011223455666666655544322223222 2345778888888998
Q ss_pred ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHH
Q 005134 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV 425 (712)
Q Consensus 356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~ 425 (712)
.+||+|+|||||.++|++|||||+||+||.+|+|+|.....+.+...+|++|+++|+|....++..+.
T Consensus 279 --~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~ 346 (388)
T PRK07494 279 --AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVD 346 (388)
T ss_pred --cCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999998655666789999999999999877765443
No 21
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.1e-38 Score=352.39 Aligned_cols=341 Identities=21% Similarity=0.275 Sum_probs=230.9
Q ss_pred cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCC--CCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~~--~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~ 119 (712)
+||+||||||+||++|+.|+++| ++|+||||++... ..+++..|+++++++|+++ |+.+.+...+.+... +.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~---~~ 77 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEAL-GVWDEIAPEAQPITD---MV 77 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHC-CChhhhhhhcCcccE---EE
Confidence 79999999999999999999996 9999999998643 3579999999999999999 999999887765532 22
Q ss_pred eeecCCCCeeee--ecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEE
Q 005134 120 YCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (712)
Q Consensus 120 ~~~~~~G~~l~~--~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v 197 (712)
+.....+..... ..... ... ...+ ..+.+.|..|++.|.+.+.+.|+ +++++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~-~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v 134 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEG--EVE-PGEP-FAHMVENRVLINALRKRAEALGI-------------------DLREATSV 134 (403)
T ss_pred EEeCCCCCCCccceEEecc--ccc-CCCc-cEEEeEhHHHHHHHHHHHHhCCC-------------------EEEcCCEE
Confidence 222111111110 01000 000 0111 12467899999999999988876 99999999
Q ss_pred EEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCce
Q 005134 198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (712)
Q Consensus 198 ~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (712)
++++++++++++++. +|+ ++++|+||+|||.+|.+|+.+|+...+..+....+.+...... . ....
T Consensus 135 ~~i~~~~~~v~v~~~---~g~----~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~------~-~~~~ 200 (403)
T PRK07333 135 TDFETRDEGVTVTLS---DGS----VLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHER------P-HGGR 200 (403)
T ss_pred EEEEEcCCEEEEEEC---CCC----EEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCC------C-CCCE
Confidence 999999888776653 342 6899999999999999999999876544433333322222111 0 1122
Q ss_pred EEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEEE-eecceechhhhcccc
Q 005134 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKFL 355 (712)
Q Consensus 278 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~va~~~~ 355 (712)
....+.++...++++...+...+++..+ ... ......+.+...+.+++.++.....+.... ...|+.....+++|.
T Consensus 201 ~~~~~~~~g~~~~~Pl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (403)
T PRK07333 201 AEEHFLPAGPFAILPLKGNRSSLVWTER--TADAERLVALDDLVFEAELEQRFGHRLGELKVLGKRRAFPLGLTLARSFV 278 (403)
T ss_pred EEEEeCCCCceEEeECCCCCeEEEEECC--HHHHHHHHCCCHHHHHHHHHHHhhhhcCceEeccCccEeechhhhhhhcc
Confidence 2333445544455555432222332211 100 011122333444455555554333333322 224666667888898
Q ss_pred ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcC---CCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD---IAPASILNTYETERKPIAEFNTALSVQNFR 429 (712)
Q Consensus 356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g---~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (712)
.|||+|+|||||.++|++|||+|+||+||.+|+|+|+.+++. .+.+.+|++|+++|++++..++..+....+
T Consensus 279 --~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~ 353 (403)
T PRK07333 279 --APRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNR 353 (403)
T ss_pred --CCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999988742 346899999999999999988876654443
No 22
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=1.7e-38 Score=349.54 Aligned_cols=335 Identities=16% Similarity=0.222 Sum_probs=229.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-----CCceeecCHhHHHHHHhhhcHHHHHHhc-CCCccc
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-----HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDL 114 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~-----~~ra~~i~~rtmeilr~l~Gl~d~l~~~-~~~~~~ 114 (712)
...+||+||||||+|+++|+.|+++|++|+||||++.+.. ..++..++++++++|+++ |+++.+.+. ..+..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~- 81 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL-GVWPAVRAARAQPYR- 81 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC-CchhhhhHhhCCccc-
Confidence 4568999999999999999999999999999999875432 246678999999999999 999998764 33322
Q ss_pred cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (712)
Q Consensus 115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g 194 (712)
.+.......+..+ .++.. .+ ..+...+.+++..|.+.|.+.+++.|+ +++++
T Consensus 82 --~~~~~~~~~~~~~-~~~~~---~~---~~~~~~~~v~~~~l~~~L~~~~~~~gv-------------------~i~~~ 133 (392)
T PRK08773 82 --RMRVWDAGGGGEL-GFDAD---TL---GREQLGWIVENDLLVDRLWAALHAAGV-------------------QLHCP 133 (392)
T ss_pred --EEEEEeCCCCceE-Eechh---cc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EEEcC
Confidence 1111111111111 11110 00 111123567889999999999988776 99999
Q ss_pred cEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCC
Q 005134 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274 (712)
Q Consensus 195 ~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (712)
+++++++++++++++++. +|+ ++++|+||+|||.+|.+|+.+|++..+..+....+...+.. +. ..
T Consensus 134 ~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~-~~------~~ 199 (392)
T PRK08773 134 ARVVALEQDADRVRLRLD---DGR----RLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDT-EH------PH 199 (392)
T ss_pred CeEEEEEecCCeEEEEEC---CCC----EEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEc-cC------CC
Confidence 999999998888876653 342 68999999999999999999998766544333333332222 11 11
Q ss_pred CceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEE-eecceechhhhcc
Q 005134 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEK 353 (712)
Q Consensus 275 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~va~~ 353 (712)
+...+..+.++....+++.+.+...++|.++.. ..+....++.+.+.+.+.+.++.....++... ...|++...++++
T Consensus 200 ~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (392)
T PRK08773 200 QATAWQRFLPTGPLALLPFADGRSSIVWTLPDA-EAERVLALDEAAFSRELTQAFAARLGEVRVASPRTAFPLRRQLVQQ 278 (392)
T ss_pred CCEEEEEeCCCCcEEEEECCCCceEEEEECCHH-HHHHHHcCCHHHHHHHHHHHHhhhhcCeEecCCccEeechhhhhhh
Confidence 223444455555555555543333344443311 11112234555555555555543333343322 2346667778899
Q ss_pred ccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc---CCCchhhHHHHHHhhhHHHHHHHH
Q 005134 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTA 422 (712)
Q Consensus 354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~---g~a~~~lL~sY~~eRrp~a~~~~~ 422 (712)
|. .|||+|+|||||.|+|++|||+|+||+||.+|+++|..+++ +.+.+.+|++|+++|++....+..
T Consensus 279 ~~--~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~ 348 (392)
T PRK08773 279 YV--SGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAY 348 (392)
T ss_pred hc--CCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 98 59999999999999999999999999999999999998763 445678999999999999764443
No 23
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=2.5e-38 Score=347.11 Aligned_cols=339 Identities=22% Similarity=0.297 Sum_probs=231.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCC----CceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTH----PQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~~~~----~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~ 119 (712)
||+||||||+||++|+.|+++| ++|+||||.+.+... +++..++++++++|+++ |+.+++...+.+... +.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~---~~ 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL-GLWPKLAPFATPILD---IH 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC-CChhhhHhhcCccce---EE
Confidence 7999999999999999999999 999999999887554 57899999999999999 999998877655432 11
Q ss_pred eeec-CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceEEeCcEE
Q 005134 120 YCTS-VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHEC 197 (712)
Q Consensus 120 ~~~~-~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~g~~v 197 (712)
+... ..+... +. ..++ ..+...+.+.|..|++.|.+.+.+. |+ ++++++++
T Consensus 77 ~~~~~~~~~~~--~~---~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~gv-------------------~~~~~~~v 129 (382)
T TIGR01984 77 VSDQGHFGATH--LR---ASEF---GLPALGYVVELADLGQALLSRLALLTNI-------------------QLYCPARY 129 (382)
T ss_pred EEcCCCCceEE--ec---hhhc---CCCccEEEEEcHHHHHHHHHHHHhCCCc-------------------EEEcCCeE
Confidence 1110 011111 10 0011 1122235688999999999999874 65 99999999
Q ss_pred EEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCce
Q 005134 198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (712)
Q Consensus 198 ~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (712)
++++++++++++++. +|+ +++||+||+|||.+|.||+.++++.....+.+..+...+.... . ....
T Consensus 130 ~~i~~~~~~~~v~~~---~g~----~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~------~-~~~~ 195 (382)
T TIGR01984 130 KEIIRNQDYVRVTLD---NGQ----QLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQ------P-HQGC 195 (382)
T ss_pred EEEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecC------C-CCCE
Confidence 999998888877653 442 6899999999999999999998876544222222222222111 0 1112
Q ss_pred EEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceE-EEeecceechhhhcccc
Q 005134 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKFL 355 (712)
Q Consensus 278 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i-~~~~~w~~~~~va~~~~ 355 (712)
.+..+.++....+++.+.+ ..+.+.+...... +...+.+.+.+.+.+.+.++.....+.. .....|.+....+++|.
T Consensus 196 ~~~~~~~~g~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (382)
T TIGR01984 196 AFERFTPHGPLALLPLKDN-YRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQVGERKTYPLKLRIAETHV 274 (382)
T ss_pred EEEeeCCCCCeEECcCCCC-CCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCccEeecchhhhhhee
Confidence 2233344433344444322 1333322211110 1112345555555566655543222222 12345667777788887
Q ss_pred ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (712)
Q Consensus 356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (712)
.|||+|+|||||.|+|++|||||+||+||.+|+|+|+.+..+...+.+|+.|+++|+++...+++.+....+.+
T Consensus 275 --~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~ 348 (382)
T TIGR01984 275 --HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLF 348 (382)
T ss_pred --cCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999998765555689999999999999999888776544433
No 24
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=5.8e-38 Score=345.70 Aligned_cols=343 Identities=17% Similarity=0.192 Sum_probs=234.5
Q ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCCC--CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCc
Q 005134 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPV 112 (712)
Q Consensus 39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~G----i~v~lvEr~~~~--~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~ 112 (712)
|..+++||+||||||+|+++|+.|+++| ++|+|+|+.+.+ ...+|+..++++++++|+++ |+++. .+.+.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~l-g~~~~---~~~~~ 82 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETL-GAWPA---DATPI 82 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhC-CCchh---cCCcc
Confidence 4456799999999999999999999997 469999998644 34568999999999999999 99875 23332
Q ss_pred cccceeEeee-cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceE
Q 005134 113 DLWRKFIYCT-SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREI 191 (712)
Q Consensus 113 ~~~~~~~~~~-~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v 191 (712)
.. ..... ...|...... .++ ..|...+.++|..|++.|.+++.+.|+ ++
T Consensus 83 ~~---~~~~~~~~~g~~~~~~-----~~~---~~~~~g~~v~r~~l~~~L~~~~~~~g~-------------------~~ 132 (398)
T PRK06996 83 EH---IHVSQRGHFGRTLIDR-----DDH---DVPALGYVVRYGSLVAALARAVRGTPV-------------------RW 132 (398)
T ss_pred cE---EEEecCCCCceEEecc-----ccc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EE
Confidence 21 11111 1112221111 111 122234578899999999999998876 89
Q ss_pred EeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCC-CchhhcccCCCcccccccccEEEEEeecCcccccc
Q 005134 192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA-GSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL 270 (712)
Q Consensus 192 ~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~-~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~ 270 (712)
+++++++++++++++|++++. ++++ +++++|||||+|||. +|.+|+.+++...+..+.+..+...+....
T Consensus 133 ~~~~~v~~~~~~~~~v~v~~~---~~~g-~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~----- 203 (398)
T PRK06996 133 LTSTTAHAPAQDADGVTLALG---TPQG-ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSA----- 203 (398)
T ss_pred EcCCeeeeeeecCCeEEEEEC---CCCc-ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccC-----
Confidence 999999999999999888764 2221 247999999999997 588899998887766555544444333211
Q ss_pred ccCCCceEEEEeecCCeEEEEEecCCCCe-EEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEEE-eecceec
Q 005134 271 LNERPGMLFFIFNTEAIGVLVAHDLKEGE-FILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMH 347 (712)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~ 347 (712)
..+...+..+.+.+...+++.+.+... +.+.....+.. .....++.+...+.+.+.++.....+.... ...|+..
T Consensus 204 --~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 281 (398)
T PRK06996 204 --PRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFTRIAGRHAFPLG 281 (398)
T ss_pred --CCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCceEEecceEEEeee
Confidence 112233334445444444444322211 33222111111 112345556666777777765444443322 2346667
Q ss_pred hhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHH
Q 005134 348 AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427 (712)
Q Consensus 348 ~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~ 427 (712)
...+++|. .|||+|+|||||.++|++|||||+||+||.+|+|+|+. .+ ..+.+|++|+++|+++...++..+...
T Consensus 282 ~~~~~~~~--~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~--~~-~~~~~L~~Y~~~R~~~~~~~~~~s~~l 356 (398)
T PRK06996 282 LNAARTLV--NGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD--HG-ATPLALATFAARRALDRRVTIGATDLL 356 (398)
T ss_pred ccccccee--cCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh--cC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888 59999999999999999999999999999999999975 33 356789999999999999998887765
Q ss_pred HHHh
Q 005134 428 FRAA 431 (712)
Q Consensus 428 ~~~~ 431 (712)
.+.+
T Consensus 357 ~~~~ 360 (398)
T PRK06996 357 PRLF 360 (398)
T ss_pred HHHH
Confidence 5443
No 25
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=9.8e-38 Score=343.48 Aligned_cols=336 Identities=19% Similarity=0.238 Sum_probs=227.8
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC------CCCceeecCHhHHHHHHhhhcHHHHHHhcC-CCc
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS------THPQAHFINNRYALVFRKLDGLAEEIERSQ-PPV 112 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~------~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~-~~~ 112 (712)
...++||+||||||+||++|+.|+++|++|+|||+.+... ...++..++++++++|+++ |+++.+.... .+.
T Consensus 2 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~ 80 (391)
T PRK08020 2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL-GVWDAVQAMRSHPY 80 (391)
T ss_pred CcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc-CChhhhhhhhCccc
Confidence 4567999999999999999999999999999999986432 2346788999999999999 9999887632 232
Q ss_pred cccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceE
Q 005134 113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI 191 (712)
Q Consensus 113 ~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v 191 (712)
.. ........+.... +. .+. ..+...+.++|..|++.|.+++.+. |+ ++
T Consensus 81 ~~---~~~~~~~~~~~~~--~~---~~~---~~~~~g~~i~r~~l~~~L~~~~~~~~gv-------------------~i 130 (391)
T PRK08020 81 RR---LETWEWETAHVVF--DA---AEL---KLPELGYMVENRVLQLALWQALEAHPNV-------------------TL 130 (391)
T ss_pred ce---EEEEeCCCCeEEe--cc---ccc---CCCccEEEEEcHHHHHHHHHHHHcCCCc-------------------EE
Confidence 11 1111111221111 10 000 1122335688999999999998776 54 89
Q ss_pred EeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccc
Q 005134 192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL 271 (712)
Q Consensus 192 ~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~ 271 (712)
++++++++++++++++++++. +|+ +++||+||+|||.+|.||+.++++..+..+.+..+.+.+....
T Consensus 131 ~~~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~------ 197 (391)
T PRK08020 131 RCPASLQALQRDDDGWELTLA---DGE----EIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCEN------ 197 (391)
T ss_pred EcCCeeEEEEEcCCeEEEEEC---CCC----EEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecC------
Confidence 999999999988888776653 342 6899999999999999999999887665555444443333211
Q ss_pred cCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC--CCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechh
Q 005134 272 NERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ--QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAE 349 (712)
Q Consensus 272 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~ 349 (712)
......+..+.+.....+++...+....++. ..+. ......+.+.+.+.+.+.++.....+.......|++...
T Consensus 198 -~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~ 273 (391)
T PRK08020 198 -PPGDSTWQQFTPSGPRAFLPLFDNWASLVWY---DSPARIRQLQAMSMAQLQQEIAAHFPARLGAVTPVAAGAFPLTRR 273 (391)
T ss_pred -CCCCEEEEEEcCCCCEEEeECCCCcEEEEEE---CCHHHHHHHHCCCHHHHHHHHHHHhhhhccceEeccccEeeccee
Confidence 1122333334444444444443221112221 1111 111233455555555555543333444444556777777
Q ss_pred hhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc---CCCchhhHHHHHHhhhHHHHHHHHHHH
Q 005134 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTALSV 425 (712)
Q Consensus 350 va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~---g~a~~~lL~sY~~eRrp~a~~~~~~s~ 425 (712)
.+++|. .+||+|+|||||.++|++|||+|+||+||.+|+|+|+...+ ++..+.+|++|+.+|++....++..+.
T Consensus 274 ~~~~~~--~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~ 350 (391)
T PRK08020 274 HALQYV--QPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMD 350 (391)
T ss_pred ehhhhc--cCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788998 49999999999999999999999999999999999998753 334578999999999998776555443
No 26
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=3.9e-37 Score=337.76 Aligned_cols=338 Identities=20% Similarity=0.247 Sum_probs=216.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~--~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~ 120 (712)
.+||+||||||+||++|+.|+++|++|+||||++.+. ...++..++++++++|+++ ||.+++...+.+..... +
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~---~ 77 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREA-GVDERMDREGLVHEGTE---I 77 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHC-CChHHHHhcCceecceE---E
Confidence 4899999999999999999999999999999998642 3457788999999999999 99999988776543221 1
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
.. .+ ....++.... ........+.|..|.+.|.+++.+.|+ .++++++++.+
T Consensus 78 ~~--~~-~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~~~~~~~g~-------------------~~~~~~~~v~~ 129 (390)
T TIGR02360 78 AF--DG-QRFRIDLKAL------TGGKTVMVYGQTEVTRDLMEAREAAGL-------------------TTVYDADDVRL 129 (390)
T ss_pred ee--CC-EEEEEecccc------CCCceEEEeCHHHHHHHHHHHHHhcCC-------------------eEEEeeeeEEE
Confidence 11 12 2222221110 011112234678899999999887776 88999999888
Q ss_pred EE-cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccc--ccc-ccEEEEEeecCccccccccCCCc
Q 005134 201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE--KDL-QKLVSVHFLSKDLGDYLLNERPG 276 (712)
Q Consensus 201 ~~-~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~--~~~-~~~~~~~~~~~~l~~~~~~~~~~ 276 (712)
.+ +++.+.|++. .+|+ ..++++|+||||||++|.||++++...... ..+ ..+..+....+ .....
T Consensus 130 ~~~~~~~~~V~~~--~~g~--~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~ 198 (390)
T TIGR02360 130 HDLAGDRPYVTFE--RDGE--RHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETP-------PVSHE 198 (390)
T ss_pred EecCCCccEEEEE--ECCe--EEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCC-------CCCCc
Confidence 65 5666667664 2443 357999999999999999999986432100 001 11111111100 00111
Q ss_pred eEEEEeecCCeEEEEEec-CCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEE----eecceechhhh
Q 005134 277 MLFFIFNTEAIGVLVAHD-LKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID----IKPWVMHAEVA 351 (712)
Q Consensus 277 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~----~~~w~~~~~va 351 (712)
. .+ ..++....+++.. .....|.+.++ .......++.+.+.+.+++.+.....+..... ....++....+
T Consensus 199 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (390)
T TIGR02360 199 L-IY-SNHERGFALCSMRSATRSRYYVQVP---LTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEKSIAPLRSFVC 273 (390)
T ss_pred e-EE-EeCCCceEEEeccCCCcceEEEEcC---CCCChhhCChhHHHHHHHHhcCchhhhhhccCCccceeeeeHHhhcc
Confidence 1 22 1222222222322 11123444332 22223445545455555555432211111101 11113345567
Q ss_pred ccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (712)
Q Consensus 352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (712)
++|. .|||+|+|||||.|+|++|||||+||+||.+|+++|...... ..+.+|+.|+++|++++..+++.|.......
T Consensus 274 ~~~~--~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~-~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~ 350 (390)
T TIGR02360 274 EPMQ--YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQE-GSSAGIEGYSARALARVWKAERFSWWMTSLL 350 (390)
T ss_pred ccCc--cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7786 599999999999999999999999999999999999876432 3578999999999999999998887654443
No 27
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-37 Score=337.84 Aligned_cols=336 Identities=16% Similarity=0.189 Sum_probs=219.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
++|+||||||+||++|+.|+++|++|+||||++.....+++..++++++++|+++ |+.+++.+.+.+... +.+ ..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~---~~~-~~ 75 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRM-GITDQLREAGYQIEH---VRS-VD 75 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHc-CCHHHHHhccCCccc---eEE-Ec
Confidence 4899999999999999999999999999999988877778888999999999999 999999887765532 222 22
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
..|..+..++... +.. ..+.....++|..|.+.|++.+.. ++ +++++++|++++++
T Consensus 76 ~~g~~~~~~~~~~---~~~-~~g~~~~~i~r~~l~~~L~~~~~~-~v-------------------~i~~~~~v~~i~~~ 131 (391)
T PRK07588 76 PTGRRKADLNVDS---FRR-MVGDDFTSLPRGDLAAAIYTAIDG-QV-------------------ETIFDDSIATIDEH 131 (391)
T ss_pred CCCCEEEEecHHH---ccc-cCCCceEEEEHHHHHHHHHHhhhc-Ce-------------------EEEeCCEEeEEEEC
Confidence 3455544332211 110 111223578899999999886643 44 99999999999999
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEee
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (712)
+++|++++. +|+ ++++|+||||||++|.||+.+.........+.......+.... .. .........+..
T Consensus 132 ~~~v~v~~~---~g~----~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~~~~~~~~~ 200 (391)
T PRK07588 132 RDGVRVTFE---RGT----PRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDG---YR-PRDERTYVLYNE 200 (391)
T ss_pred CCeEEEEEC---CCC----EEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCC---CC-CCCCceEEEEeC
Confidence 999877664 453 5789999999999999999763221111122222211111111 10 111111222223
Q ss_pred cCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCC---cc-eEE-Eeecc---eechhhhcccc
Q 005134 284 TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS---DI-DVI-DIKPW---VMHAEVAEKFL 355 (712)
Q Consensus 284 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~---~~-~i~-~~~~w---~~~~~va~~~~ 355 (712)
++...+.++.+ ++.+.+.+....+. ....++.+...+.+++.++.... .+ +.+ ....+ ......+++|.
T Consensus 201 ~g~~~~~~p~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 277 (391)
T PRK07588 201 VGRQVARVALR--GDRTLFLFIFRAEH-DNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWS 277 (391)
T ss_pred CCCEEEEEecC--CCCeEEEEEEEcCC-ccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccc
Confidence 43333334433 23333322222221 22334555556666665542111 11 111 11111 12334566776
Q ss_pred ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHH
Q 005134 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQ 426 (712)
Q Consensus 356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~ 426 (712)
.|||+|+|||||.|+|+.|||+|+||+||.+|+|+|+... ...+.+|+.|+++|+|+...++..+..
T Consensus 278 --~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~--~~~~~al~~Y~~~R~~~~~~~~~~~~~ 344 (391)
T PRK07588 278 --RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG--GDHRRAFDAYEKRLRPFIAGKQAAAAK 344 (391)
T ss_pred --cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5999999999999999999999999999999999998632 235789999999999999988877653
No 28
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=340.28 Aligned_cols=341 Identities=18% Similarity=0.259 Sum_probs=231.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-----CCceeecCHhHHHHHHhhhcHHHHHHhcC-CCcccc
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-----HPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLW 115 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~-----~~ra~~i~~rtmeilr~l~Gl~d~l~~~~-~~~~~~ 115 (712)
+++||+||||||+||++|+.|++.|++|+||||++.+.. .+++..++++++++|+++ |+.+++.... .+...
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~~- 81 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL-GVWQALDAARLAPVYD- 81 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc-CchhhhhhhcCCcceE-
Confidence 358999999999999999999999999999999988654 456789999999999999 9998875433 23221
Q ss_pred ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc
Q 005134 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (712)
Q Consensus 116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~ 195 (712)
+.+.....+ .+... .+. ...|...+.+.|..|++.|.+++++.|. ++++ ++
T Consensus 82 --~~~~~~~~~----~~~~~---~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~------------------v~~~-~~ 132 (388)
T PRK07608 82 --MRVFGDAHA----RLHFS---AYQ-AGVPQLAWIVESSLIERALWAALRFQPN------------------LTWF-PA 132 (388)
T ss_pred --EEEEECCCc----eeEee---ccc-cCCCCCEEEEEhHHHHHHHHHHHHhCCC------------------cEEE-cc
Confidence 111111111 11110 000 0123334568899999999999988762 3777 99
Q ss_pred EEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCC
Q 005134 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (712)
Q Consensus 196 ~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (712)
++++++++++++++++. +|+ +++||+||+|||++|.||+.+++...........+.+.+.... . ..
T Consensus 133 ~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~ 198 (388)
T PRK07608 133 RAQGLEVDPDAATLTLA---DGQ----VLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAER------P-HR 198 (388)
T ss_pred eeEEEEecCCeEEEEEC---CCC----EEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecC------C-CC
Confidence 99999988888776654 342 6899999999999999999999876654444434444444321 1 11
Q ss_pred ceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEE-Eeecceechhhhcc
Q 005134 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEK 353 (712)
Q Consensus 276 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~va~~ 353 (712)
...+.++.++...++++.+. +.+.+........ ......+++.+.+.++.........++.. ....|++....++.
T Consensus 199 ~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (388)
T PRK07608 199 GTAYQWFRDDGILALLPLPD--GHVSMVWSARTAHADELLALSPEALAARVERASGGRLGRLECVTPAAGFPLRLQRVDR 276 (388)
T ss_pred CEEEEEecCCCCEEEeECCC--CCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHhcCCceecCCcceeecchhhhhh
Confidence 22333345554444555443 3433322211110 11122355666666666543222233322 22346666667788
Q ss_pred ccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHH--cCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL--KDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (712)
Q Consensus 354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl--~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (712)
|. .+||+|+|||||.|+|++|||+|+||+||.+|+|+|.... .+.+..++|++|+++|+++.+.++..+....+.+
T Consensus 277 ~~--~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~ 354 (388)
T PRK07608 277 LV--APRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRLF 354 (388)
T ss_pred hh--cCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 4999999999999999999999999999999999998764 2444568999999999999998887776544433
No 29
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=1.7e-37 Score=342.37 Aligned_cols=340 Identities=16% Similarity=0.165 Sum_probs=216.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
.+|+||||||+||++|+.|+++|++|+||||.+.+...+++..|+++++++|+++ |+.+++...+.... .+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~-Gl~~~l~~~~~~~~---~~~~~~g 78 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERL-GVADRLSGTGVTPK---ALYLMDG 78 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHC-CChHHHhhcccCcc---eEEEecC
Confidence 6899999999999999999999999999999998888899999999999999999 99999987665442 1222211
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
..+......+... ............+.|..|+++|++.+.+.+. ++++++++|++++++
T Consensus 79 ~~~~~~~~~~~~~---~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------i~v~~~~~v~~~~~~ 137 (400)
T PRK06475 79 RKARPLLAMQLGD---LARKRWHHPYIVCHRADLQSALLDACRNNPG------------------IEIKLGAEMTSQRQT 137 (400)
T ss_pred CCcceEEEecchh---hhhhcCCCCceeECHHHHHHHHHHHHHhcCC------------------cEEEECCEEEEEecC
Confidence 1121111111100 0000011223468999999999999876421 389999999999999
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEE--EeecCcccccccc--CCCceEE
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV--HFLSKDLGDYLLN--ERPGMLF 279 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~--~~~~~~l~~~~~~--~~~~~~~ 279 (712)
++++++++...+++ .++++|+||||||++|.||++++.... .+...+.+ .+....+...... .......
T Consensus 138 ~~~v~v~~~~~~~~----~~~~adlvIgADG~~S~vR~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (400)
T PRK06475 138 GNSITATIIRTNSV----ETVSAAYLIACDGVWSMLRAKAGFSKA---RFSGHIAWRTTLAADALPASFLSAMPEHKAVS 210 (400)
T ss_pred CCceEEEEEeCCCC----cEEecCEEEECCCccHhHHhhcCCCCC---CcCCceEEEEEeehhhcchhhhhhcccCCceE
Confidence 89988887643332 368999999999999999999865321 12122111 1111111110000 1122223
Q ss_pred EEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCC----CHHHHHHHHHHHhCCCCC--c-ceE-EEeecceechhhh
Q 005134 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF----SPEICEKLIFKLVGWELS--D-IDV-IDIKPWVMHAEVA 351 (712)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~e~~~~~i~~~~g~~~~--~-~~i-~~~~~w~~~~~va 351 (712)
.++.++...++++...+ ..+.+.. +.........+ +.+.+.+++. ++... . ++. .....|++.....
T Consensus 211 ~~~g~~~~~~~~p~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~i~~~~~~~~~~l~~~~~ 285 (400)
T PRK06475 211 AWLGNKAHFIAYPVKGG-KFFNFVA-ITGGENPGEVWSKTGDKAHLKSIYA---DWNKPVLQILAAIDEWTYWPLFEMAD 285 (400)
T ss_pred EEEcCCCEEEEEEccCC-cEEEEEE-EEcCCCCcccCCCCCCHHHHHHHhc---CCChHHHHHHhcCCceeECcCcccCC
Confidence 33455544444444322 2232221 11111111112 2222222221 12110 0 111 1223455554445
Q ss_pred ccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHH
Q 005134 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV 425 (712)
Q Consensus 352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~ 425 (712)
.+|.+ .|||+|+|||||.|+|+.|||+|+||+||..|+++|.. .....+|+.|+++|+|+++.++..+.
T Consensus 286 ~~~~~-~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~----~~~~~aL~~Ye~~R~~r~~~~~~~s~ 354 (400)
T PRK06475 286 AQFVG-PDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS----DDQSAGLKRFDSVRKERIAAVAKRGQ 354 (400)
T ss_pred Cccee-cCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55532 59999999999999999999999999999999999963 23468999999999999999988774
No 30
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=3e-37 Score=338.67 Aligned_cols=340 Identities=21% Similarity=0.268 Sum_probs=231.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-----CceeecCHhHHHHHHhhhcHHHHHHh-cCCCcccccee
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-----PQAHFINNRYALVFRKLDGLAEEIER-SQPPVDLWRKF 118 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~-----~ra~~i~~rtmeilr~l~Gl~d~l~~-~~~~~~~~~~~ 118 (712)
||+||||||+||++|+.|+++|++|+||||++.+... +++..++++++++|+++ |+.+++.+ .+.+... +
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~---~ 76 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL-GVWDKIEPDRAQPIRD---I 76 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC-CchhhhhhhcCCCceE---E
Confidence 7999999999999999999999999999999986433 57899999999999999 99999987 5554432 2
Q ss_pred EeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (712)
Q Consensus 119 ~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~ 198 (712)
.+. ...+.....+.. . + ...+...+.++|..|.+.|++.+.+.|. ++++++++|+
T Consensus 77 ~~~-~~~~~~~~~~~~--~-~---~~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------~~v~~~~~v~ 131 (385)
T TIGR01988 77 HVS-DGGSFGALHFDA--D-E---IGLEALGYVVENRVLQQALWERLQEYPN------------------VTLLCPARVV 131 (385)
T ss_pred EEE-eCCCCceEEech--h-h---cCCCccEEEEEcHHHHHHHHHHHHhCCC------------------cEEecCCeEE
Confidence 111 111211111110 0 0 0112224578899999999999988772 3999999999
Q ss_pred EEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceE
Q 005134 199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (712)
Q Consensus 199 ~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (712)
+++++++++++++. +|+ ++++|+||+|||.+|.+|++++++..........+...+..... .....
T Consensus 132 ~i~~~~~~~~v~~~---~g~----~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 197 (385)
T TIGR01988 132 ELPRHSDHVELTLD---DGQ----QLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERP-------HQGTA 197 (385)
T ss_pred EEEecCCeeEEEEC---CCC----EEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCC-------CCCEE
Confidence 99998888776553 453 58999999999999999999987765443333333333322110 11222
Q ss_pred EEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceE-EEeecceechhhhccccc
Q 005134 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKFLC 356 (712)
Q Consensus 279 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i-~~~~~w~~~~~va~~~~~ 356 (712)
+..+.++...++++.+. +.+.+.+...+.. .....++.+.+.+.+++.++.....+.. .....|++....+++|.
T Consensus 198 ~~~~~~~g~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 274 (385)
T TIGR01988 198 WERFTPTGPLALLPLPD--NRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGAITLVGERHAFPLSLTHAKRYV- 274 (385)
T ss_pred EEEecCCCCEEEeECCC--CCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCceEeccCcceeechhhhhhhee-
Confidence 22333444334444433 3333332221111 1122345555666666655432222222 22345666666777887
Q ss_pred cCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc-C--CCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-D--IAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (712)
Q Consensus 357 ~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g--~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (712)
.+||+|+|||||.|+|++|||||+||+||.+|+|+|+..++ + ...+.+|+.|+++|+++++.++..+....+.+
T Consensus 275 -~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~ 351 (385)
T TIGR01988 275 -APRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLF 351 (385)
T ss_pred -cCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999998764 2 23579999999999999999998876555443
No 31
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=342.20 Aligned_cols=340 Identities=17% Similarity=0.214 Sum_probs=225.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-----CCCceeecCHhHHHHHHhhhcHHHHHHhcCC-Ccccc
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-----THPQAHFINNRYALVFRKLDGLAEEIERSQP-PVDLW 115 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~-----~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~-~~~~~ 115 (712)
+++||+||||||+||++|+.|+++|++|+|+||.+.+. ..+++..++++++++|+++ |+.+++...+. +..
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l-Gl~~~~~~~~~~~~~-- 78 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL-GAWDRIPEDEISPLR-- 78 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC-CChhhhccccCCccc--
Confidence 46999999999999999999999999999999998742 2356677899999999999 99998876542 221
Q ss_pred ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHh-cCceeeccCccccccccccccceEEeC
Q 005134 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMG 194 (712)
Q Consensus 116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~g 194 (712)
..... .+.....+....... ......+.++|..|.+.|++.+.+ .|+ +++++
T Consensus 79 -~~~~~---~~~~~~~~~~~~~~~----~~~~~g~~~~~~~l~~~l~~~~~~~~g~-------------------~i~~~ 131 (392)
T PRK09126 79 -DAKVL---NGRSPFALTFDARGR----GADALGYLVPNHLIRRAAYEAVSQQDGI-------------------ELLTG 131 (392)
T ss_pred -eEEEE---cCCCCceeEeehhhc----CCCcceEEEeHHHHHHHHHHHHhhCCCc-------------------EEEcC
Confidence 11111 111111111100000 001112457888999999988764 344 99999
Q ss_pred cEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCC
Q 005134 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274 (712)
Q Consensus 195 ~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (712)
+++++++++++++++++. +|+ +++||+||+|||.+|.||+.+|++..........+...+... ...
T Consensus 132 ~~v~~~~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~-------~~~ 197 (392)
T PRK09126 132 TRVTAVRTDDDGAQVTLA---NGR----RLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHE-------LPH 197 (392)
T ss_pred CeEEEEEEcCCeEEEEEc---CCC----EEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEecc-------CCC
Confidence 999999998888776653 443 689999999999999999999877643332222222222111 011
Q ss_pred CceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceE-EEeecceechhhhc
Q 005134 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAE 352 (712)
Q Consensus 275 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i-~~~~~w~~~~~va~ 352 (712)
....+.++.++...++++.+. +.+.+.+.+.+.. ......+++.+.+.+.+.++.....+.. .....|+.....++
T Consensus 198 ~~~~~~~~~~~~~~~~~P~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (392)
T PRK09126 198 HHTAWEWFGYGQTLALLPLNG--HLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAH 275 (392)
T ss_pred CCEEEEEecCCCCeEEeECCC--CCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCCcEeechHHHHH
Confidence 223334445444444455442 3444433322211 1112345555555555544432222221 12234566667778
Q ss_pred cccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc---CCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTALSVQNFR 429 (712)
Q Consensus 353 ~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~---g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (712)
+|. .+||+|+|||||.++|++|||+|+||+||.+|+|+|+.+++ +...+++|+.|+++|++++..++..+....+
T Consensus 276 ~~~--~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~ 353 (392)
T PRK09126 276 RFV--AKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAA 353 (392)
T ss_pred HHh--hcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 49999999999999999999999999999999999999874 3345789999999999999998887765444
No 32
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=336.53 Aligned_cols=345 Identities=20% Similarity=0.267 Sum_probs=230.6
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCC-Ccccccee
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP-PVDLWRKF 118 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~-~~~~~~~~ 118 (712)
..+++||+||||||+||++|+.|+++|++|+||||++.....+++..+++.++++|+++ |+++.+.+... +.. .+
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~l-G~~~~~~~~~~~~~~---~~ 78 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDEL-GLLERFLELPHQKVR---TL 78 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHc-CChhHHhhcccceee---eE
Confidence 35679999999999999999999999999999999987655678899999999999999 99998876432 221 11
Q ss_pred EeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (712)
Q Consensus 119 ~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~ 198 (712)
.+. ..|..+...+.... . ........++|..+.+.|.+.+.+.+. ++++++++++
T Consensus 79 ~~~--~~~~~~~~~~~~~~---~--~~~~~~~~v~~~~l~~~L~~~~~~~~~------------------v~i~~~~~v~ 133 (407)
T PRK06185 79 RFE--IGGRTVTLADFSRL---P--TPYPYIAMMPQWDFLDFLAEEASAYPN------------------FTLRMGAEVT 133 (407)
T ss_pred EEE--ECCeEEEecchhhc---C--CCCCcEEEeehHHHHHHHHHHHhhCCC------------------cEEEeCCEEE
Confidence 111 12322222221110 0 001123467899999999998876522 3999999999
Q ss_pred EEEEcCCeEE-EEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCce
Q 005134 199 SVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (712)
Q Consensus 199 ~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (712)
+++.+++.+. +++.. .+|+ .+++||+||+|||.+|.||+.+|++.....+.+..+. +.... . ...+..
T Consensus 134 ~~~~~~~~v~~v~~~~-~~g~---~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~--~~~~~-~----~~~~~~ 202 (407)
T PRK06185 134 GLIEEGGRVTGVRART-PDGP---GEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLW--FRLPR-E----PDDPES 202 (407)
T ss_pred EEEEeCCEEEEEEEEc-CCCc---EEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEE--EecCC-C----CCCCcc
Confidence 9998887764 44442 2332 4799999999999999999999988765554444332 22211 1 111123
Q ss_pred EEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCC---CCcce-EEEeecceechhhhc
Q 005134 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWE---LSDID-VIDIKPWVMHAEVAE 352 (712)
Q Consensus 278 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~---~~~~~-i~~~~~w~~~~~va~ 352 (712)
.+..+.++...++++.+ +.|.+........ ......+.+.+.+.+.+.++.. ...++ +.....|++....++
T Consensus 203 ~~~~~~~~g~~~llP~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~ 279 (407)
T PRK06185 203 LMGRFGPGQGLIMIDRG---DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLR 279 (407)
T ss_pred cceEecCCcEEEEEcCC---CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccc
Confidence 34455665544455443 3444332221111 1122233444555554443321 11111 112234556667788
Q ss_pred cccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC-CchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFR 429 (712)
Q Consensus 353 ~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~-a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (712)
+|. .+||+|+|||||.++|++|||||+||+||.+|+|+|+..+++. .++.+|+.|+++|++....++..+....+
T Consensus 280 ~~~--~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~ 355 (407)
T PRK06185 280 RWH--RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQR 355 (407)
T ss_pred ccc--CCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 887 4999999999999999999999999999999999999887543 45689999999999999988876654443
No 33
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=6.8e-37 Score=337.21 Aligned_cols=344 Identities=19% Similarity=0.259 Sum_probs=226.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCC-C----CCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCc
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNK-A----FSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPV 112 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~---Gi~v~lvEr~~-~----~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~ 112 (712)
|+.+||+||||||+||++|+.|+++ |++|+||||.. . +...+++..++++++++|+++ |+.+++.+.+.+.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~ 79 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL-GVWQALADCATPI 79 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC-CChhhhHhhcCCc
Confidence 3568999999999999999999999 99999999963 2 122357899999999999999 9999998877554
Q ss_pred cccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEE
Q 005134 113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL 192 (712)
Q Consensus 113 ~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 192 (712)
... .+. . .+. ....... ..++ ..+.....+.|..|.+.|.+.+.+.+. ++++
T Consensus 80 ~~~---~~~-~-~~~-~~~~~~~-~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~g------------------~~~~ 131 (395)
T PRK05732 80 THI---HVS-D-RGH-AGFVRLD-AEDY---GVPALGYVVELHDVGQRLFALLDKAPG------------------VTLH 131 (395)
T ss_pred cEE---EEe-c-CCC-CceEEee-hhhc---CCCccEEEEEhHHHHHHHHHHHhcCCC------------------cEEE
Confidence 321 111 1 111 1101000 0011 112223457888999999998876431 3899
Q ss_pred eCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCcccccccc
Q 005134 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN 272 (712)
Q Consensus 193 ~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~ 272 (712)
+++++++++++++++++++. +|. ++++|+||+|||.+|.||+.+++...........+...+.....
T Consensus 132 ~~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~------ 198 (395)
T PRK05732 132 CPARVANVERTQGSVRVTLD---DGE----TLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA------ 198 (395)
T ss_pred cCCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC------
Confidence 99999999988888876654 342 68999999999999999999988765443322222222221110
Q ss_pred CCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcc-eEEEeecceechhh
Q 005134 273 ERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEV 350 (712)
Q Consensus 273 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~~~~v 350 (712)
.....+..+.+.....+++.+. +.+.+...+.... .....++.+...+.+.+.+++....+ ++.....|.+....
T Consensus 199 -~~~~~~~~~~~~g~~~~~p~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (395)
T PRK05732 199 -HQGRAFERFTEHGPLALLPMSD--GRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAYPLALVT 275 (395)
T ss_pred -CCCEEEEeecCCCCEEEeECCC--CCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHhhhcceeecCCcceecccccc
Confidence 1112222233333334444432 3433322211111 11223455555556666555432222 12223345555566
Q ss_pred hccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCC---chhhHHHHHHhhhHHHHHHHHHHHHH
Q 005134 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA---PASILNTYETERKPIAEFNTALSVQN 427 (712)
Q Consensus 351 a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a---~~~lL~sY~~eRrp~a~~~~~~s~~~ 427 (712)
+++|. .|||+|+|||||.++|++|||+|+||+||.+|+|+|+.++++.. .+.+|++|+++|++++..++..+...
T Consensus 276 ~~~~~--~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~ 353 (395)
T PRK05732 276 AAQQI--SHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGL 353 (395)
T ss_pred hhhhc--cCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777 49999999999999999999999999999999999998875432 35899999999999999888877654
Q ss_pred HHHh
Q 005134 428 FRAA 431 (712)
Q Consensus 428 ~~~~ 431 (712)
.+.+
T Consensus 354 ~~~~ 357 (395)
T PRK05732 354 VRLF 357 (395)
T ss_pred HHHH
Confidence 4433
No 34
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=334.84 Aligned_cols=342 Identities=20% Similarity=0.235 Sum_probs=219.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
+||+||||||+||++|+.|+++|++|+||||++.+.+.+.+..++++++++|+++ |+.+++...+.+...+ .+ .+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~l-gl~~~l~~~~~~~~~~---~~-~~ 75 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAEL-GLLDALDAIGIRTREL---AY-FN 75 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHC-CCHHHHHhhCCCCcce---EE-Ec
Confidence 4899999999999999999999999999999998887888899999999999999 9999998877655322 22 22
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHh-cCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~ 202 (712)
..|+.+......... ....+.+.+.|..|+++|++.+.+ .|. ++|+++++|+++++
T Consensus 76 ~~g~~~~~~~~~~~~-----~~~~~~~~i~R~~l~~~L~~~~~~~~g~------------------~~i~~~~~v~~~~~ 132 (413)
T PRK07538 76 RHGQRIWSEPRGLAA-----GYDWPQYSIHRGELQMLLLDAVRERLGP------------------DAVRTGHRVVGFEQ 132 (413)
T ss_pred CCCCEEeeccCCccc-----CCCCceEEEEHHHHHHHHHHHHHhhcCC------------------cEEEcCCEEEEEEe
Confidence 345544321110000 011223468899999999999865 354 37999999999999
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEe
Q 005134 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (712)
Q Consensus 203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (712)
+++++.+.+.+..+| ..++++||+||||||++|.||++++.... ...+...+...... ....+. ....+.+.
T Consensus 133 ~~~~~~~~~~~~~~g--~~~~~~adlvIgADG~~S~vR~~l~~~~~-~~~~~g~~~~~~~~-~~~~~~----~~~~~~~~ 204 (413)
T PRK07538 133 DADVTVVFLGDRAGG--DLVSVRGDVLIGADGIHSAVRAQLYPDEG-PPRWNGVMMWRGVT-EAPPFL----TGRSMVMA 204 (413)
T ss_pred cCCceEEEEeccCCC--ccceEEeeEEEECCCCCHHHhhhhcCCCC-CCcccceEEEEEee-cCcccc----CCCcEEEE
Confidence 888877777643233 23589999999999999999999864321 22222222211111 111111 11111222
Q ss_pred e-cCCeEEEEEecCC-----CCeEEEEEecCCC---CCCCCCCCH-HHHHHHHHHHhCCCCC--cc-eE----EEeecce
Q 005134 283 N-TEAIGVLVAHDLK-----EGEFILQVPFYPP---QQNLEDFSP-EICEKLIFKLVGWELS--DI-DV----IDIKPWV 345 (712)
Q Consensus 283 ~-~~~~g~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~-e~~~~~i~~~~g~~~~--~~-~i----~~~~~w~ 345 (712)
+ ++...++++.... ...+.|.+++..+ ......++. ....+++..+-++... ++ ++ .....|+
T Consensus 205 g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~p 284 (413)
T PRK07538 205 GHLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEYP 284 (413)
T ss_pred cCCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeecc
Confidence 2 1222223332211 0133343333222 112223322 2222333332232211 00 11 1122344
Q ss_pred ech-hhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHH
Q 005134 346 MHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424 (712)
Q Consensus 346 ~~~-~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s 424 (712)
+.. ...++|. .|||+|+|||||.|+|++|||+|+||+||.+|+++|+.. + ..+.+|+.|+++|+|++..++..+
T Consensus 285 ~~~~~~~~~w~--~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~--~-~~~~aL~~Ye~~R~~~~~~~~~~s 359 (413)
T PRK07538 285 MVDRDPLPRWT--RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH--G-DPEAALAAYEAERRPATAQIVLAN 359 (413)
T ss_pred ccccCCCCccc--CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc--C-CHHHHHHHHHHHhhHHHHHHHHHh
Confidence 332 3456777 499999999999999999999999999999999999863 2 367899999999999999888766
Q ss_pred HH
Q 005134 425 VQ 426 (712)
Q Consensus 425 ~~ 426 (712)
..
T Consensus 360 ~~ 361 (413)
T PRK07538 360 RL 361 (413)
T ss_pred hh
Confidence 53
No 35
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=330.14 Aligned_cols=328 Identities=19% Similarity=0.236 Sum_probs=213.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
++|+||||||+||++|+.|+++|++|+||||++.+...++++.++++++++|+.+ |+.+.+...+.+... +.+ .+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~-gl~~~~~~~~~~~~~---~~~-~~ 75 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNH-DLAKGIKNAGQILST---MNL-LD 75 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhc-ChHHHHHhcCCcccc---eeE-Ec
Confidence 4799999999999999999999999999999999888889999999999999999 999998877655432 112 22
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
..|+.+..... . .......++|..|.++|.+.+.. .+|++++++++++++
T Consensus 76 ~~g~~~~~~~~------~---~~~~~~~i~R~~l~~~L~~~~~~---------------------~~i~~~~~v~~i~~~ 125 (373)
T PRK06753 76 DKGTLLNKVKL------K---SNTLNVTLHRQTLIDIIKSYVKE---------------------DAIFTGKEVTKIENE 125 (373)
T ss_pred CCCCEEeeccc------c---cCCccccccHHHHHHHHHHhCCC---------------------ceEEECCEEEEEEec
Confidence 34554332211 0 01123578999999999987643 279999999999999
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEee
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (712)
++++++++. +|+ ++++|+||||||.+|.||+.++.... ..+.....+....... .. .. ......++.
T Consensus 126 ~~~v~v~~~---~g~----~~~~~~vigadG~~S~vR~~~~~~~~--~~~~g~~~~~~~~~~~-~~--~~-~~~~~~~~~ 192 (373)
T PRK06753 126 TDKVTIHFA---DGE----SEAFDLCIGADGIHSKVRQSVNADSK--VRYQGYTCFRGLIDDI-DL--KL-PDCAKEYWG 192 (373)
T ss_pred CCcEEEEEC---CCC----EEecCEEEECCCcchHHHHHhCCCCC--ceEcceEEEEEEeccc-cc--cC-ccceEEEEc
Confidence 888887754 453 57999999999999999999875432 1111111111111111 00 01 111222333
Q ss_pred cCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHH-------HhCCCCCcceEEEeeccee-chhhhcccc
Q 005134 284 TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFK-------LVGWELSDIDVIDIKPWVM-HAEVAEKFL 355 (712)
Q Consensus 284 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~-------~~g~~~~~~~i~~~~~w~~-~~~va~~~~ 355 (712)
++...++++...+...|.+.++...........+.+.+.+.+.. ++... ....+. .|.. .....++|.
T Consensus 193 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~ 268 (373)
T PRK06753 193 TKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQ-SETGIL---HHDIYDLKPLKSFV 268 (373)
T ss_pred CCCEEEEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhC-Ccccce---eecccccccccccc
Confidence 33333333333221123332221111112223333333333221 11100 000011 1111 122346776
Q ss_pred ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429 (712)
Q Consensus 356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (712)
.|||+|+|||||.|+|+.|||+|+||+||.+|++.|.. ...+++|+.|+++|++++..+++.+....+
T Consensus 269 --~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~----~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~ 336 (373)
T PRK06753 269 --YGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA----YDFEKALQRYDKIRVKHTAKVIKRSRKIGK 336 (373)
T ss_pred --CCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHhhHHHHHHHHHHHHHhH
Confidence 49999999999999999999999999999999999953 245889999999999999999988865443
No 36
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=7.5e-36 Score=329.09 Aligned_cols=342 Identities=20% Similarity=0.221 Sum_probs=218.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~ 121 (712)
+..+|+||||||+||++|+.|+++|++|+||||++.+...++++.|+++++++|+++ |+.+.+.+.+.+... +.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~~~~~~~~~~---~~~~ 78 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDAL-GVGEAARQRAVFTDH---LTMM 78 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHc-CChHHHHhhccCCcc---eEEE
Confidence 458999999999999999999999999999999998888889999999999999999 999998876654432 2233
Q ss_pred ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (712)
Q Consensus 122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~ 201 (712)
....|..+..++... .+.. ..+.....+.|..|.+.|.+.+.+.+. +++++++++++++
T Consensus 79 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------v~~~~~~~v~~i~ 137 (396)
T PRK08163 79 DAVDAEEVVRIPTGQ--AFRA-RFGNPYAVIHRADIHLSLLEAVLDHPL------------------VEFRTSTHVVGIE 137 (396)
T ss_pred eCCCCCEEEEeccch--hHHH-hcCCcEEEEEHHHHHHHHHHHHHhcCC------------------cEEEeCCEEEEEe
Confidence 333455554432211 0100 011223467899999999999887652 4899999999999
Q ss_pred EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhccc-CCC--cccccccccEEEEEeecCccccccccCCCceE
Q 005134 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GID--LVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (712)
Q Consensus 202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~l-gi~--~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (712)
++++++++++. +|+ ++++|+||+|||.+|.+|+.+ +.+ +.|...+ ...+...++..... ....
T Consensus 138 ~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~~r~~~~g~~~~~~g~~~~----~~~~~~~~~~~~~~---~~~~ 203 (396)
T PRK08163 138 QDGDGVTVFDQ---QGN----RWTGDALIGCDGVKSVVRQSLVGDAPRVTGHVVY----RAVIDVDDMPEDLR---INAP 203 (396)
T ss_pred cCCCceEEEEc---CCC----EEecCEEEECCCcChHHHhhccCCCCCccccEEE----EEEEeHHHCcchhc---cCcc
Confidence 98888776653 342 689999999999999999987 432 1221111 11111112211110 1111
Q ss_pred EEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CC--CCCCCHHHHHHHHHHHhCCCCCcceEE----Eeeccee-chhh
Q 005134 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QN--LEDFSPEICEKLIFKLVGWELSDIDVI----DIKPWVM-HAEV 350 (712)
Q Consensus 279 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~e~~~~~i~~~~g~~~~~~~i~----~~~~w~~-~~~v 350 (712)
..+..++...++.+...+ ..+.+.+.+.... .. ....+.+.+ .+.+-++.+.-.+++ ....|.. ....
T Consensus 204 ~~~~g~~~~~~~~p~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (396)
T PRK08163 204 VLWAGPHCHLVHYPLRGG-EQYNLVVTFHSREQEEWGVKDGSKEEV---LSYFEGIHPRPRQMLDKPTSWKRWATADREP 279 (396)
T ss_pred EEEEcCCceEEEEEecCC-eEEEEEEEECCCCCcccccCCCCHHHH---HHHHcCCChHHHHHHhcCCceeEccccCCCc
Confidence 222333333333333211 1222222221111 11 011122222 222222211110111 1111222 2234
Q ss_pred hccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005134 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA 430 (712)
Q Consensus 351 a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~ 430 (712)
.++|. .|||+|+|||||.|+|++|||+|+||+||++|++.|... +...+.+|+.|+++|+|++..++..+......
T Consensus 280 ~~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~ 355 (396)
T PRK08163 280 VAKWS--TGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC--DGDAEAAFALYESVRIPRTARVVLSAREMGRI 355 (396)
T ss_pred ccccc--cCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 56776 499999999999999999999999999999999999752 33357899999999999999999887655443
No 37
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=1.5e-35 Score=323.08 Aligned_cols=335 Identities=16% Similarity=0.159 Sum_probs=210.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
.+|+||||||+||++|+.|+++|++|+||||++.+...+.+..+.++++++|+++ ||.+.+.+.+.+... +. +.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~l-Gl~~~~~~~~~~~~~---~~-~~~ 76 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERM-GLLAAAQEHKTRIRG---AS-FVD 76 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhc-CCHHHHHhhccCccc---eE-EEe
Confidence 4899999999999999999999999999999999888888889999999999999 999999876655432 22 223
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
..|..+........... .-......+.|..|.++|.+.+ ..+ ++++|++++++++++
T Consensus 77 ~~g~~~~~~~~~~~~~~---~~~~~~~~i~R~~L~~~l~~~~-~~~-------------------v~i~~~~~v~~i~~~ 133 (372)
T PRK05868 77 RDGNELFRDTESTPTGG---PVNSPDIELLRDDLVELLYGAT-QPS-------------------VEYLFDDSISTLQDD 133 (372)
T ss_pred CCCCEEeecccccccCC---CCCCceEEEEHHHHHHHHHHhc-cCC-------------------cEEEeCCEEEEEEec
Confidence 35554432111000000 0011123566778888776543 233 389999999999998
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCccc-ccccccEEEEEeecCccccccccCCCceEEEEe
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG-EKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (712)
+++|++++. +|+ ++++|+||||||++|.||+++...... ...+. .....+..+.. . .. .....|.+
T Consensus 134 ~~~v~v~~~---dg~----~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g-~~~~~~~~~~~---~-~~-~~~~~~~~ 200 (372)
T PRK05868 134 GDSVRVTFE---RAA----AREFDLVIGADGLHSNVRRLVFGPEEQFVKRLG-THAAIFTVPNF---L-EL-DYWQTWHY 200 (372)
T ss_pred CCeEEEEEC---CCC----eEEeCEEEECCCCCchHHHHhcCCcccceeecc-eEEEEEEcCCC---C-CC-CcceEEEe
Confidence 888887765 443 578999999999999999998432211 11111 12222222211 1 11 12223334
Q ss_pred ecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHh---CCCCCcc-eEEE-ee--cce-echhhhccc
Q 005134 283 NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDI-DVID-IK--PWV-MHAEVAEKF 354 (712)
Q Consensus 283 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~---g~~~~~~-~i~~-~~--~w~-~~~~va~~~ 354 (712)
+++....+++...+...+.+. .+............+...+.+++.+ ++....+ +.+. .. .|. +.....++|
T Consensus 201 g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w 279 (372)
T PRK05868 201 GDSTMAGVYSARNNTEARAAL-AFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRW 279 (372)
T ss_pred cCCcEEEEEecCCCCceEEEE-EEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCC
Confidence 544433333333221212211 1111111111112233344444443 3432211 1211 11 111 333455688
Q ss_pred cccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHH
Q 005134 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424 (712)
Q Consensus 355 ~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s 424 (712)
. +|||+|+|||||.++|+.|||+|+||+||+.||+.|+.. ....+++|+.|+...||+..+.++..
T Consensus 280 ~--~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~--~~~~~~al~~ye~~~~~~~~~~q~~~ 345 (372)
T PRK05868 280 S--RGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA--GDDYQLGFANYHAEFHGFVERNQWLV 345 (372)
T ss_pred C--CCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhHHHHHhhhhh
Confidence 7 599999999999999999999999999999999999763 22368899999999888888766654
No 38
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=320.32 Aligned_cols=336 Identities=18% Similarity=0.202 Sum_probs=220.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~ 122 (712)
..||+||||||+||++|+.|+++|++|+||||++.+...+.+..++++++++|+++ |+.+.+.+.+.+.... . ..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~-gl~~~~~~~~~~~~~~---~-~~ 78 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALREL-GVLDECLEAGFGFDGV---D-LF 78 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHc-CCHHHHHHhCCCccce---E-EE
Confidence 47999999999999999999999999999999998888889999999999999999 9999998877655321 1 22
Q ss_pred cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (712)
Q Consensus 123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~ 202 (712)
+..|+.+..++...... . ..+ ....+.|..|.+.|.+.+.+.|+ ++++++++++++.
T Consensus 79 ~~~g~~~~~~~~~~~~~--~-~~~-~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~i~~ 135 (375)
T PRK06847 79 DPDGTLLAELPTPRLAG--D-DLP-GGGGIMRPALARILADAARAAGA-------------------DVRLGTTVTAIEQ 135 (375)
T ss_pred CCCCCEEEecCcccccc--c-CCC-CcccCcHHHHHHHHHHHHHHhCC-------------------EEEeCCEEEEEEE
Confidence 33555544332111000 0 001 23568899999999999988776 9999999999999
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhccc-CCCcccccccccEEEEEeecCccccccccCCCceEEEE
Q 005134 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281 (712)
Q Consensus 203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~l-gi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (712)
+++++++++. +|+ ++++|+||+|||.+|.+|+++ +.... . .+.....+....+.... ... .+.+
T Consensus 136 ~~~~~~v~~~---~g~----~~~ad~vI~AdG~~s~~r~~l~~~~~~-~-~~~g~~~~~~~~~~~~~-----~~~-~~~~ 200 (375)
T PRK06847 136 DDDGVTVTFS---DGT----TGRYDLVVGADGLYSKVRSLVFPDEPE-P-EYTGQGVWRAVLPRPAE-----VDR-SLMY 200 (375)
T ss_pred cCCEEEEEEc---CCC----EEEcCEEEECcCCCcchhhHhcCCCCC-c-eeccceEEEEEecCCCC-----ccc-eEEE
Confidence 8888776653 443 689999999999999999987 43221 1 11111111111111000 011 1222
Q ss_pred eecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCC-c---c-eEE----Eeecceech-hhh
Q 005134 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS-D---I-DVI----DIKPWVMHA-EVA 351 (712)
Q Consensus 282 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~-~---~-~i~----~~~~w~~~~-~va 351 (712)
.+++....+++... ...|.+... ..+. ...++++...+.+++.+..... . + +.+ ....|++.. ...
T Consensus 201 ~~~~~~~~~~p~~~-~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (375)
T PRK06847 201 LGPTTKAGVVPLSE-DLMYLFVTE-PRPD--NPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVP 276 (375)
T ss_pred eCCCcEEEEEcCCC-CeEEEEEec-cCcc--cccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCC
Confidence 34333323333321 122332221 1111 1223444444455544331111 0 0 001 111222222 234
Q ss_pred ccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005134 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA 430 (712)
Q Consensus 352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~ 430 (712)
.+|. .|||+|+|||||.|+|++|||+|+||+||.+|+++|.. ....+.+|+.|+++|+|+++.+++.|..+...
T Consensus 277 ~~~~--~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~---~~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~ 350 (375)
T PRK06847 277 APWH--RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR---HDSLEAALQAYYARRWERCRMVVEASARIGRI 350 (375)
T ss_pred CCcc--CCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 5676 59999999999999999999999999999999999975 34457899999999999999999988766544
No 39
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=5e-35 Score=321.21 Aligned_cols=335 Identities=15% Similarity=0.126 Sum_probs=202.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~-~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~ 119 (712)
|+..+|+||||||+||++|+.|+++|++|+||||++.+ ...+.+..++++++++|+++ |+.+.. ..+.+... .
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~-~~~~~~~~---~- 77 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEA-GVALPA-DIGVPSRE---R- 77 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHc-CCCccc-ccccCccc---e-
Confidence 45689999999999999999999999999999999764 34556788999999999999 997654 33333221 1
Q ss_pred eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (712)
Q Consensus 120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~ 199 (712)
.+....|+.+... +.....+.+..|.+.|++.+. .++++++++|++
T Consensus 78 ~~~~~~g~~~~~~-------------~~~~~~~~~~~l~~~L~~~~~---------------------~~~i~~~~~v~~ 123 (386)
T PRK07236 78 IYLDRDGRVVQRR-------------PMPQTQTSWNVLYRALRAAFP---------------------AERYHLGETLVG 123 (386)
T ss_pred EEEeCCCCEeecc-------------CCCccccCHHHHHHHHHHhCC---------------------CcEEEcCCEEEE
Confidence 1122344433211 111123456677777765432 148999999999
Q ss_pred EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecC--ccccccccCCCce
Q 005134 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK--DLGDYLLNERPGM 277 (712)
Q Consensus 200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 277 (712)
+++++++|++++. +|+ +++||+||+|||++|.||+++. +.... .+...+.+..... .+...........
T Consensus 124 i~~~~~~v~v~~~---~g~----~~~ad~vIgADG~~S~vR~~l~-~~~~~-~~~g~~~~~~~v~~~~~~~~~~~~~~~~ 194 (386)
T PRK07236 124 FEQDGDRVTARFA---DGR----RETADLLVGADGGRSTVRAQLL-PDVRP-TYAGYVAWRGLVDEAALPPEARAALRDR 194 (386)
T ss_pred EEecCCeEEEEEC---CCC----EEEeCEEEECCCCCchHHHHhC-CCCCC-CcCCeEEEEEecchHHcCchhhhhcccc
Confidence 9999999887764 453 6899999999999999999983 22212 2222222211111 1111000000111
Q ss_pred EEEEeecCCeEEEEEecCCC-------C--eEEEEEecCCCCC---CC--------------CCCCHHHHHHHHHHHhC-
Q 005134 278 LFFIFNTEAIGVLVAHDLKE-------G--EFILQVPFYPPQQ---NL--------------EDFSPEICEKLIFKLVG- 330 (712)
Q Consensus 278 ~~~~~~~~~~g~~~~~~~~~-------~--~~~~~~~~~~~~~---~~--------------~~~~~e~~~~~i~~~~g- 330 (712)
..+...++...+.++.+... . .|++..+...... .. ....++. .+.+++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 273 (386)
T PRK07236 195 FTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDV-LAELRDDAAE 273 (386)
T ss_pred eEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHH-HHHHHHHHHH
Confidence 22223333333333322110 1 2444433221100 00 0011222 223322211
Q ss_pred -CCCCcceEE----EeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhh
Q 005134 331 -WELSDIDVI----DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASI 405 (712)
Q Consensus 331 -~~~~~~~i~----~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~l 405 (712)
+.+.-.+++ ....|.+.....++|. .|||+|+|||||.|+|+.|||+|+||+||..|+++|.... ...+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~--~~~~~a 349 (386)
T PRK07236 274 LLAPVFAELVEATAQPFVQAIFDLEVPRMA--FGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA--GDIDAA 349 (386)
T ss_pred hcCHHHHHHHhhCcCchhhhhhcccCcccc--cCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc--cchHHH
Confidence 111000000 1112333333456776 5999999999999999999999999999999999997642 225789
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Q 005134 406 LNTYETERKPIAEFNTALSVQNFR 429 (712)
Q Consensus 406 L~sY~~eRrp~a~~~~~~s~~~~~ 429 (712)
|+.|+++|+|+++.++..|.....
T Consensus 350 l~~Ye~~R~~r~~~~~~~s~~~~~ 373 (386)
T PRK07236 350 LAAWEAERLAVGAAIVARGRRLGA 373 (386)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999998865433
No 40
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=4e-35 Score=324.96 Aligned_cols=345 Identities=18% Similarity=0.257 Sum_probs=208.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcc-ccce--eE
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVD-LWRK--FI 119 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~-~~~~--~~ 119 (712)
++|+||||||+||++|+.|+++| ++|+||||++.....+.+..+.++++++|+++ |+.+.+.+.+.... .+.. +.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~l-g~~~~~~~~~~~~~~~~~~~~~~ 79 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGL-GLGEAYTQVADSTPAPWQDIWFE 79 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHc-CChhHHHHHhcCCCccCcceeEE
Confidence 47999999999999999999998 69999999999888889999999999999999 99988877653211 1111 11
Q ss_pred eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (712)
Q Consensus 120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~ 199 (712)
+.....+..+... + ........+.|..|...|.+.+.. ..++++++|++
T Consensus 80 ~~~~~~~~~~~~~-------~---~~~~~~~~i~R~~l~~~L~~~~~~---------------------~~v~~~~~v~~ 128 (414)
T TIGR03219 80 WRNGSDASYLGAT-------I---APGVGQSSVHRADFLDALLKHLPE---------------------GIASFGKRATQ 128 (414)
T ss_pred EEecCccceeeee-------c---cccCCcccCCHHHHHHHHHHhCCC---------------------ceEEcCCEEEE
Confidence 1111111111100 0 001112357888888888876532 26899999999
Q ss_pred EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCC--cc-cccccccEEEEE--eecCccccc-----
Q 005134 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGID--LV-GEKDLQKLVSVH--FLSKDLGDY----- 269 (712)
Q Consensus 200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~--~~-g~~~~~~~~~~~--~~~~~l~~~----- 269 (712)
++++++++++++. +|+ ++++|+||+|||++|.||+.+... .. ....+.....+. +...++...
T Consensus 129 i~~~~~~~~v~~~---~g~----~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~ 201 (414)
T TIGR03219 129 IEEQAEEVQVLFT---DGT----EYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAG 201 (414)
T ss_pred EEecCCcEEEEEc---CCC----EEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhcccc
Confidence 9999888877664 443 689999999999999999987311 00 011111111111 111111110
Q ss_pred cccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCC------CCCCCC-HHHHHHHHHHHhCCCCCcceE----
Q 005134 270 LLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQ------NLEDFS-PEICEKLIFKLVGWELSDIDV---- 338 (712)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~e~~~~~i~~~~g~~~~~~~i---- 338 (712)
..........+++.++...++++...+ ..+.+..-...+.. ....++ +....++++.+-++.+.-.++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~p~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~ 280 (414)
T TIGR03219 202 LDEHLVDVPQMYLGLDGHILTFPVRQG-RLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECI 280 (414)
T ss_pred ccccccccceEEEcCCCeEEEEECCCC-cEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhC
Confidence 000000111122334333333333222 11221111111100 001121 111222333322322100000
Q ss_pred EEeecceech-hhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHH-cCCCchhhHHHHHHhhhHH
Q 005134 339 IDIKPWVMHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIAPASILNTYETERKPI 416 (712)
Q Consensus 339 ~~~~~w~~~~-~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl-~g~a~~~lL~sY~~eRrp~ 416 (712)
.....|.+.. ...++|. +|||+|+|||||.|+|+.|||+|+||+||.+|++.|.... ++...+.+|+.|+++|+|+
T Consensus 281 ~~~~~~~~~~~~~~~~w~--~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r 358 (414)
T TIGR03219 281 PAPTLWALHDLAELPGYV--HGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPR 358 (414)
T ss_pred CCCCceeeeeccccccee--eCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHH
Confidence 1112233322 2356776 5999999999999999999999999999999999998754 2344578999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005134 417 AEFNTALSVQNFRA 430 (712)
Q Consensus 417 a~~~~~~s~~~~~~ 430 (712)
+..+++.|..+...
T Consensus 359 ~~~~~~~s~~~~~~ 372 (414)
T TIGR03219 359 ACRVQRTSREAGEL 372 (414)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998866543
No 41
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=4.5e-33 Score=315.91 Aligned_cols=352 Identities=19% Similarity=0.253 Sum_probs=210.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCC---ceeecCHhHHHHHHhhhc--HHHHHHhcCCCccc
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHP---QAHFINNRYALVFRKLDG--LAEEIERSQPPVDL 114 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~-~~~~---ra~~i~~rtmeilr~l~G--l~d~l~~~~~~~~~ 114 (712)
....+|+||||||+||++|+.|+++|++|+||||++.. ...+ +++.|+++++++|+++ | +.+++.+.+.....
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~L-Gl~~~e~l~~~g~~~~~ 157 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAI-DIDVAEQVMEAGCITGD 157 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHc-CcchHHHHHhhcCcccc
Confidence 45689999999999999999999999999999998743 2212 5688999999999999 7 46777776643211
Q ss_pred cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (712)
Q Consensus 115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g 194 (712)
....+.....|.....++...... ....| ....+.|..|+++|.+.+. . ..++++
T Consensus 158 -~i~~~~d~~~G~~~~~~~~~~~~~--~~g~p-~~~~I~R~~L~~~L~~alg---~------------------~~i~~g 212 (668)
T PLN02927 158 -RINGLVDGISGSWYVKFDTFTPAA--SRGLP-VTRVISRMTLQQILARAVG---E------------------DVIRNE 212 (668)
T ss_pred -eeeeeeecCCCceEeecccccccc--ccCCC-eEEEEeHHHHHHHHHhhCC---C------------------CEEEcC
Confidence 111122223444433332211110 00011 1346899999999977542 2 257899
Q ss_pred cEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhccc-CCCcccccccccEEEEEeecCccccccccC
Q 005134 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273 (712)
Q Consensus 195 ~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~l-gi~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 273 (712)
++|+++++++++|++++. +|+ ++++|+||||||++|.||+.+ +.. ...+.....+....+...... .
T Consensus 213 ~~V~~I~~~~d~VtV~~~---dG~----ti~aDlVVGADG~~S~vR~~l~g~~---~~~~sG~~~~rgi~~~~p~~~--~ 280 (668)
T PLN02927 213 SNVVDFEDSGDKVTVVLE---NGQ----RYEGDLLVGADGIWSKVRNNLFGRS---EATYSGYTCYTGIADFIPADI--E 280 (668)
T ss_pred CEEEEEEEeCCEEEEEEC---CCC----EEEcCEEEECCCCCcHHHHHhcCCC---CCcccceEEEEEEcCCCcccc--c
Confidence 999999999999887664 443 679999999999999999987 322 112222222221111111000 0
Q ss_pred CCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHH-hCCCCCcceEE------Eeeccee
Q 005134 274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKL-VGWELSDIDVI------DIKPWVM 346 (712)
Q Consensus 274 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~-~g~~~~~~~i~------~~~~w~~ 346 (712)
.... ..+.++.. .++..+...+.+.+......+... .+ ..+...+.+.+. -++.+.-.+++ ....|.+
T Consensus 281 ~~~~-~~~~G~~~--~~v~~~v~~g~~~~~~f~~~p~~~-~~-~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~i 355 (668)
T PLN02927 281 SVGY-RVFLGHKQ--YFVSSDVGGGKMQWYAFHEEPAGG-AD-APNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDI 355 (668)
T ss_pred ccce-EEEEcCCe--EEEEEcCCCCeEEEEEEEECCccc-cc-cchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeE
Confidence 1111 11122222 222223233333332211111110 01 112222222222 22321111111 0112332
Q ss_pred chh-hhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcC-------CCchhhHHHHHHhhhHHHH
Q 005134 347 HAE-VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD-------IAPASILNTYETERKPIAE 418 (712)
Q Consensus 347 ~~~-va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g-------~a~~~lL~sY~~eRrp~a~ 418 (712)
... ...+|. .|||+|+|||||.|+|+.|||+|+||+||+.|+++|....++ ...+.+|+.|+++|+|++.
T Consensus 356 yd~~p~~~W~--~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~ 433 (668)
T PLN02927 356 YDRSPGFTWG--KGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVA 433 (668)
T ss_pred EeccCCCccc--cCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHH
Confidence 221 223565 599999999999999999999999999999999999887533 2346899999999999999
Q ss_pred HHHHHHHHHHHHhcccccc
Q 005134 419 FNTALSVQNFRAAMEVPSA 437 (712)
Q Consensus 419 ~~~~~s~~~~~~~~~~~~~ 437 (712)
.++..+.....+.......
T Consensus 434 ~i~~~ar~a~~~~~~~~~y 452 (668)
T PLN02927 434 IIHAMARMAAIMASTYKAY 452 (668)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9988876655555443333
No 42
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=7.5e-33 Score=311.73 Aligned_cols=344 Identities=17% Similarity=0.154 Sum_probs=210.4
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~ 119 (712)
....+||+||||||+|+++|+.|+++|++|+|+||.........+..++++++++|+++ |+.+++....... +..+.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~L-Gl~d~l~~~~~~~--~~~~~ 116 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKL-GLEDCLEGIDAQK--ATGMA 116 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHc-CCcchhhhccCcc--cccEE
Confidence 45668999999999999999999999999999999876555667889999999999999 9999887653321 12222
Q ss_pred eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (712)
Q Consensus 120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~ 199 (712)
... .|+... .+...... .. ........+.+.+|.+.|++++.+.+. ++++++ ++++
T Consensus 117 v~~--~g~~~~-~~~~~~~~-~~-~~~~~g~~i~r~~l~~~L~~~a~~~~~------------------V~i~~g-tvv~ 172 (514)
T PLN02985 117 VYK--DGKEAV-APFPVDNN-NF-PYEPSARSFHNGRFVQRLRQKASSLPN------------------VRLEEG-TVKS 172 (514)
T ss_pred EEE--CCEEEE-EeCCCCCc-CC-CcccceeeeecHHHHHHHHHHHHhCCC------------------eEEEee-eEEE
Confidence 211 343321 11111000 00 001123467889999999999987643 477766 4666
Q ss_pred EEEcCCe-EEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceE
Q 005134 200 VSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (712)
Q Consensus 200 v~~~~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (712)
+..+++. +.|++.+. +|+ +.+++||+||+|||.+|.+|+++++..... ....... ...... . ..+...
T Consensus 173 li~~~~~v~gV~~~~~-dG~--~~~~~AdLVVgADG~~S~vR~~l~~~~~~~--~s~~~~~--~~~~~~--~--~~~~~~ 241 (514)
T PLN02985 173 LIEEKGVIKGVTYKNS-AGE--ETTALAPLTVVCDGCYSNLRRSLNDNNAEV--LSYQVGY--ISKNCR--L--EEPEKL 241 (514)
T ss_pred EEEcCCEEEEEEEEcC-CCC--EEEEECCEEEECCCCchHHHHHhccCCCcc--eeEeEEE--EEcccc--C--CCCCcc
Confidence 6555443 24555432 342 457889999999999999999998654321 1111111 111110 0 112223
Q ss_pred EEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHH------------HHHHHHhC--CCCCcceEEEeecc
Q 005134 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE------------KLIFKLVG--WELSDIDVIDIKPW 344 (712)
Q Consensus 279 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~------------~~i~~~~g--~~~~~~~i~~~~~w 344 (712)
+.++.+....++++...+...+.+.++... ....+..... +.+++.+. .+.. .++.....+
T Consensus 242 ~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~-~~~~~~p~~ 316 (514)
T PLN02985 242 HLIMSKPSFTMLYQISSTDVRCVFEVLPDN----IPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEG-AHIKVVPTK 316 (514)
T ss_pred eEEcCCCceEEEEEeCCCeEEEEEEEeCCC----CCCcChhhHHHHHHhccccccCHHHHHHHHhhcccc-cceeecCcc
Confidence 334444444444444322222233333211 1111111111 12222211 1111 112211111
Q ss_pred eechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHH---cCCCchhhHHHHHHhhhHHHHHHH
Q 005134 345 VMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL---KDIAPASILNTYETERKPIAEFNT 421 (712)
Q Consensus 345 ~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl---~g~a~~~lL~sY~~eRrp~a~~~~ 421 (712)
......+. .+|++|+|||||.|+|+.|||||+||+||..|+..|...- +..+..++|++|+.+|+|++..++
T Consensus 317 ---~l~~~~~~--~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~ 391 (514)
T PLN02985 317 ---RMSATLSD--KKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVN 391 (514)
T ss_pred ---cccccccC--CCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHH
Confidence 12223333 4899999999999999999999999999999999997642 122346899999999999999999
Q ss_pred HHHHHHHHHh
Q 005134 422 ALSVQNFRAA 431 (712)
Q Consensus 422 ~~s~~~~~~~ 431 (712)
..|...++.+
T Consensus 392 ~la~al~~~f 401 (514)
T PLN02985 392 TLGNAFSQVL 401 (514)
T ss_pred HHHHHHHHHH
Confidence 9998887765
No 43
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=3.9e-33 Score=289.84 Aligned_cols=320 Identities=23% Similarity=0.247 Sum_probs=190.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~ 122 (712)
+-+|+|||||++||++|++|+|.|++|+|+|++..++..++++.+.-+++.+|+.+ |+.+.++..+.|...+ +..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai-~~~e~i~~~gip~~~~---v~~~ 77 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAI-GLKEQIREQGIPLGGR---VLIH 77 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHc-ccHHHHHHhcCcccce---eeee
Confidence 36899999999999999999999999999999998888899998888899999999 9999999999988543 2445
Q ss_pred cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEE-----
Q 005134 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC----- 197 (712)
Q Consensus 123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v----- 197 (712)
..+|++..++......++ ...+.|..+.+.|+..+...+ .|+|+..+
T Consensus 78 ~~sg~~~~~~~~~~~~~~--------i~r~~~r~ll~~lL~~a~~~~--------------------~ikf~~~~~~~~~ 129 (420)
T KOG2614|consen 78 GDSGKEVSRILYGEPDEY--------ILRINRRNLLQELLAEALPTG--------------------TIKFHSNLSCTSK 129 (420)
T ss_pred cCCCCeeEecccCCchHH--------HHHHHHHHHHHHHHHhhcCCC--------------------eeecccccccccc
Confidence 667887776654433322 245556555555554444332 56666532
Q ss_pred -EEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccc--cccCC
Q 005134 198 -VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDY--LLNER 274 (712)
Q Consensus 198 -~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~ 274 (712)
+.++.......+.+. +| .++++|+||||||++|.||+.|+........++.+..+.|........ .....
T Consensus 130 ~~~~~~~~~~~~v~l~---~g----~~~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~ 202 (420)
T KOG2614|consen 130 DVEIETLGKKLVVHLS---DG----TTVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIY 202 (420)
T ss_pred cceeeecccccceecC---CC----cEEEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceeccc
Confidence 233332233333332 34 379999999999999999999987654455555555554433221110 00011
Q ss_pred CceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCC-------HHHHHHHHHHHhCCCCCcce-EEEeeccee
Q 005134 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-------PEICEKLIFKLVGWELSDID-VIDIKPWVM 346 (712)
Q Consensus 275 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~e~~~~~i~~~~g~~~~~~~-i~~~~~w~~ 346 (712)
+..++....+....+++..-...-.+.+..++..++.. .... ++.+.+++. +++.+..... +....||++
T Consensus 203 ~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l-~~~~~~v~~~~~en~~d~i~-~~~~e~i~~t~l~~r~p~~~ 280 (420)
T KOG2614|consen 203 GNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKL-KKTSLEVVDFFPENFPDIIE-LTGEESIVRTPLADRPPWPL 280 (420)
T ss_pred CCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHH-hhhHHHHHHHhHHhHHHHHH-hcChHHhhhchhhhcCCcCe
Confidence 12222222222111111111111122222222111110 1111 122222221 1221111111 223334443
Q ss_pred chhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHH
Q 005134 347 HAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYE 410 (712)
Q Consensus 347 ~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~ 410 (712)
++-+.+ .++|+|+|||||.|.|+.|||+|+|++|+..|+.+|+...+. .+..+.+|+
T Consensus 281 ---i~~~~s--~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d--~s~~~~~~s 337 (420)
T KOG2614|consen 281 ---ISVKCS--PGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND--VSLAGEEYS 337 (420)
T ss_pred ---eeeccC--CCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc--hhcccccee
Confidence 222232 479999999999999999999999999999999999988653 233344444
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=2.1e-31 Score=301.25 Aligned_cols=342 Identities=16% Similarity=0.110 Sum_probs=203.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~-~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~ 120 (712)
.++||+||||||+|+++|+.|+++|++|+||||.+.. .....+..|+++++++|+++ |+.+++...+.+... +..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~L-GL~d~l~~i~~~~~~---~~v 107 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKEL-GMEECAEGIGMPCFG---YVV 107 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHC-CChhhHhhcCcceee---eEE
Confidence 4699999999999999999999999999999998722 22345678999999999999 999999877765432 111
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
.+..|+.+ .+... .......+.+.++.+.|++.+.+.- .++++++. .+++++
T Consensus 108 -~~~~G~~~-~i~~~---------~~~~g~~~~rg~~~~~Lr~~a~~~~----------------~~~V~v~~-~~v~~l 159 (567)
T PTZ00367 108 -FDHKGKQV-KLPYG---------AGASGVSFHFGDFVQNLRSHVFHNC----------------QDNVTMLE-GTVNSL 159 (567)
T ss_pred -EECCCCEE-EecCC---------CCCceeEeEHHHHHHHHHHHHHhhc----------------CCCcEEEE-eEEEEe
Confidence 12234332 11110 0111234567788888888772110 01246654 467777
Q ss_pred EEcCCe-----EEEEEEeccCCc------------------eeeEEEEecEEEeccCCCchhhcccCCCcccccccccEE
Q 005134 201 SATDQC-----INVIASFLKEGK------------------CTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLV 257 (712)
Q Consensus 201 ~~~~~~-----v~v~v~~~~~g~------------------~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~ 257 (712)
..+++. ..|++...+.++ ....+++||+||||||.+|.||+++++......+...+.
T Consensus 160 ~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~ 239 (567)
T PTZ00367 160 LEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFV 239 (567)
T ss_pred ccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEE
Confidence 544332 223333221100 012479999999999999999999976433233333332
Q ss_pred EEEeecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCC-CCC---C--------CHHHHHHHH
Q 005134 258 SVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN-LED---F--------SPEICEKLI 325 (712)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~--------~~e~~~~~i 325 (712)
........+. .+.....++.++...++++... ++..+.+.+..+... ..+ + .++.+.+.+
T Consensus 240 g~~~~~~~lp------~~~~~~v~~g~~gpi~~yPl~~--~~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f 311 (567)
T PTZ00367 240 GLVLKNVRLP------KEQHGTVFLGKTGPILSYRLDD--NELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESF 311 (567)
T ss_pred EEEEecccCC------CCCeeEEEEcCCceEEEEEcCC--CeEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHH
Confidence 2222111111 1222233456655555555543 332222222111100 000 0 011111112
Q ss_pred HHHhCCCCCcceEEEeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc----CC-
Q 005134 326 FKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK----DI- 400 (712)
Q Consensus 326 ~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~----g~- 400 (712)
.+.+... .. ...|+.....+.++. .+||+|+|||||.|+|+.|||||+||+||..|+++|..+.+ ..
T Consensus 312 ~~~l~~~-~~-----l~~~p~~~~p~~~~~--~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~ 383 (567)
T PTZ00367 312 IRASKDT-KR-----IRSMPNARYPPAFPS--IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQN 383 (567)
T ss_pred HHhhccc-CC-----eEEeeHhhCCCccCC--CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCch
Confidence 1111100 11 122333333344444 58999999999999999999999999999999999986532 11
Q ss_pred ---CchhhHH----HHHHhhhHHHHHHHHHHHHHHHHh
Q 005134 401 ---APASILN----TYETERKPIAEFNTALSVQNFRAA 431 (712)
Q Consensus 401 ---a~~~lL~----sY~~eRrp~a~~~~~~s~~~~~~~ 431 (712)
..+.+|+ +|+.+|++++..++..+...++.+
T Consensus 384 d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf 421 (567)
T PTZ00367 384 EMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVF 421 (567)
T ss_pred hHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 1256677 999999999999998887776554
No 45
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.96 E-value=3.2e-27 Score=262.20 Aligned_cols=329 Identities=13% Similarity=0.143 Sum_probs=194.3
Q ss_pred cCCCCccCCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCC
Q 005134 31 LSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP 110 (712)
Q Consensus 31 ~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~ 110 (712)
++...+.+++.+++||+||||||+|+++|+.|+++|++|+|+||+.. ...+++..|+. +.++++ |+.+.+.....
T Consensus 27 ~~~~~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~~---~~l~~l-gl~~~~~~~~i 101 (450)
T PLN00093 27 LAAAASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIPL---CMVGEF-DLPLDIIDRKV 101 (450)
T ss_pred eecCCCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hHHhhh-cCcHHHHHHHh
Confidence 33334445667789999999999999999999999999999999864 45678888865 556677 77666544211
Q ss_pred CccccceeEeeecCCCCeeeeecCCCccccccccCCc-cccccChhHHHHHHHHHHHhcCceeeccCccccccccccccc
Q 005134 111 PVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPV-SVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR 189 (712)
Q Consensus 111 ~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~-~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (712)
. ...+. +..+..+. +.. ...+. ....++|..|++.|.+++.+.|+
T Consensus 102 ~-----~~~~~-~p~~~~v~-~~~--------~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga------------------- 147 (450)
T PLN00093 102 T-----KMKMI-SPSNVAVD-IGK--------TLKPHEYIGMVRREVLDSFLRERAQSNGA------------------- 147 (450)
T ss_pred h-----hheEe-cCCceEEE-ecc--------cCCCCCeEEEecHHHHHHHHHHHHHHCCC-------------------
Confidence 1 11111 11221111 000 01111 12358999999999999999887
Q ss_pred eEEeCcEEEEEEEc---CCeEEEEEEecc----CCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEee
Q 005134 190 EILMGHECVSVSAT---DQCINVIASFLK----EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFL 262 (712)
Q Consensus 190 ~v~~g~~v~~v~~~---~~~v~v~v~~~~----~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~ 262 (712)
+++.+ ++++++.. ++.+.+++.... +|+ ..+++||+||||||++|.||+.+++... .....+...+.
T Consensus 148 ~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~--~~~v~a~~VIgADG~~S~vrr~lg~~~~---~~~~~~~~~~~ 221 (450)
T PLN00093 148 TLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGT--PKTLEVDAVIGADGANSRVAKDIDAGDY---DYAIAFQERIK 221 (450)
T ss_pred EEEec-eEEEEEeccCCCCcEEEEEEeccccccCCC--ccEEEeCEEEEcCCcchHHHHHhCCCCc---ceeEEEEEEEe
Confidence 77766 47777642 345666665321 132 3579999999999999999999987521 11111111111
Q ss_pred cCccccccccCCCceEEEEe----ecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceE
Q 005134 263 SKDLGDYLLNERPGMLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDV 338 (712)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i 338 (712)
.++. .. ...+....+.+ .|+..+|+++.. +...+.+..... ..+.....+.++..+.......++
T Consensus 222 ~~~~--~~-~~~~~~~~~~~g~~~~p~~Y~WifP~g---~~~~VG~g~~~~-----~~~~~~~~~~l~~~~~~~l~~~~~ 290 (450)
T PLN00093 222 IPDD--KM-EYYEDLAEMYVGDDVSPDFYGWVFPKC---DHVAVGTGTVVN-----KPAIKKYQRATRNRAKDKIAGGKI 290 (450)
T ss_pred CChh--hc-cccCCeEEEEeCCCCCCCceEEEEECC---CcEEEEEEEccC-----CCChHHHHHHHHHHhhhhcCCCeE
Confidence 1110 00 01111222222 244455666543 122222211111 112223333343333221111223
Q ss_pred EEeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC---CchhhHHHHHHhhhH
Q 005134 339 IDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKP 415 (712)
Q Consensus 339 ~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~---a~~~lL~sY~~eRrp 415 (712)
.....+.+......++. .+|++|+|||||.++|+.|+|++.||.++..+|+.++..++.. .....|..|++..+.
T Consensus 291 ~~~~~~~ip~~~~~~~~--~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~ 368 (450)
T PLN00093 291 IRVEAHPIPEHPRPRRV--RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDK 368 (450)
T ss_pred EEEEEEEccccccccee--CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHH
Confidence 32222222223344555 4899999999999999999999999999999999999887432 245779999987665
Q ss_pred HH
Q 005134 416 IA 417 (712)
Q Consensus 416 ~a 417 (712)
.-
T Consensus 369 ~~ 370 (450)
T PLN00093 369 KY 370 (450)
T ss_pred HH
Confidence 43
No 46
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.96 E-value=1.2e-28 Score=290.61 Aligned_cols=327 Identities=20% Similarity=0.262 Sum_probs=201.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhc--HHHHHHhcCCCccccceeE
Q 005134 44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDG--LAEEIERSQPPVDLWRKFI 119 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~G--l~d~l~~~~~~~~~~~~~~ 119 (712)
++|+||||||+||++|+.|+++ |++|+|+||++.....+++..+++++++.|+.+ + +.+.+...... |....
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~-~~~~~~~~~~~~~~---~~~~~ 76 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAA-DPVSAAAIGDAFNH---WDDID 76 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhc-CHHHHHHHHHhccc---CCceE
Confidence 4799999999999999999998 899999999998877888999999999999877 5 34444432211 22111
Q ss_pred eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (712)
Q Consensus 120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~ 199 (712)
+.. .|..+. ........+.|..|.++|++++.+.|+ ++++++++++
T Consensus 77 ~~~--~g~~~~-------------~~g~~~~~i~R~~L~~~L~e~a~~~GV-------------------~i~~g~~v~~ 122 (765)
T PRK08255 77 VHF--KGRRIR-------------SGGHGFAGIGRKRLLNILQARCEELGV-------------------KLVFETEVPD 122 (765)
T ss_pred EEE--CCEEEE-------------ECCeeEecCCHHHHHHHHHHHHHHcCC-------------------EEEeCCccCc
Confidence 111 222111 011122468899999999999999887 8999998876
Q ss_pred EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (712)
Q Consensus 200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (712)
+++. .+++|+||+|||.+|.||+++...+.............+.... .. ....
T Consensus 123 i~~~-------------------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~---~~-----~~~~ 175 (765)
T PRK08255 123 DQAL-------------------AADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHK---VF-----DAFT 175 (765)
T ss_pred hhhh-------------------hcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCC---cc-----ccee
Confidence 5320 1368999999999999999864322211011000000110000 00 0000
Q ss_pred EEeecCCeEE----EEEecCCCCeEEEEEecCCC---CCCCCCCCHHHHHHHHHHHhCCCCCcceEEE------eeccee
Q 005134 280 FIFNTEAIGV----LVAHDLKEGEFILQVPFYPP---QQNLEDFSPEICEKLIFKLVGWELSDIDVID------IKPWVM 346 (712)
Q Consensus 280 ~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~------~~~w~~ 346 (712)
+.+.+...++ .++.......|++..+ +. ......++++...+.+++.+........++. ...|..
T Consensus 176 ~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~~ 253 (765)
T PRK08255 176 FAFEETEHGWFQAHAYRFDDDTSTFIVETP--EEVWRAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWIN 253 (765)
T ss_pred EEEEecCCceEEEEEeeeCCCCcEEEEEcC--HHHHHhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceeee
Confidence 0111111111 1222222222333221 11 0122344555555555554432211111211 122543
Q ss_pred -chhhhccccccCCc----EEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHH
Q 005134 347 -HAEVAEKFLCCYNQ----IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNT 421 (712)
Q Consensus 347 -~~~va~~~~~~~gR----V~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~ 421 (712)
....+++|. .|| |+|+|||||.++|+.|||+|+||+||+.|++.|.... ...+.+|+.|+++|+++++.++
T Consensus 254 ~~~~~~~~w~--~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~--~~~~~al~~ye~~R~~r~~~~~ 329 (765)
T PRK08255 254 FPRVVCERWV--HWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP--GDLPAALAAYEEERRVEVLRIQ 329 (765)
T ss_pred cceeccCCCc--cCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHHHHHHHHH
Confidence 334567777 488 9999999999999999999999999999999998642 2468899999999999999999
Q ss_pred HHHHHHHHHhcccccccCCC
Q 005134 422 ALSVQNFRAAMEVPSALGLD 441 (712)
Q Consensus 422 ~~s~~~~~~~~~~~~~~g~~ 441 (712)
+.|..+..++.......+.+
T Consensus 330 ~~s~~~~~~~~~~~~~~~~~ 349 (765)
T PRK08255 330 NAARNSTEWFENVERYAGLE 349 (765)
T ss_pred HHHHHhCceeeecchhhCCC
Confidence 99887655554433333443
No 47
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.96 E-value=8.6e-28 Score=253.47 Aligned_cols=291 Identities=19% Similarity=0.227 Sum_probs=183.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
+||+||||||+||++|+.|+++|++|+||||++.+....++..+.+++++.+... +.. .+.. +....+ ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~-------~~~~~~-~~ 70 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLP-LEL-IVNL-------VRGARF-FS 70 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCC-chh-hhhh-------eeeEEE-Ec
Confidence 6999999999999999999999999999999998777778889999999998876 541 1111 111111 12
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
..++.+. .. ........++|.+|++.|.+.+.+.|+ ++++++++++++++
T Consensus 71 ~~~~~~~-~~----------~~~~~~~~i~r~~l~~~l~~~~~~~gv-------------------~~~~~~~v~~~~~~ 120 (295)
T TIGR02032 71 PNGDSVE-IP----------IETELAYVIDRDAFDEQLAERAQEAGA-------------------ELRLGTTVLDVEIH 120 (295)
T ss_pred CCCcEEE-ec----------cCCCcEEEEEHHHHHHHHHHHHHHcCC-------------------EEEeCcEEeeEEEe
Confidence 2332221 10 111224568999999999999998887 99999999999998
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEee
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (712)
++++++.+. ++ ..++++|+||+|||.+|.+|+.+++...... ....+...+..+. ... ......+++-+.
T Consensus 121 ~~~~~~~~~---~~---~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~ 190 (295)
T TIGR02032 121 DDRVVVIVR---GG---EGTVTAKIVIGADGSRSIVAKKLGLRKEPRE-LGVAARAEVEMPD-EEV--DEDFVEVYIDRG 190 (295)
T ss_pred CCEEEEEEc---Cc---cEEEEeCEEEECCCcchHHHHhcCCCCCCcc-eeeEEEEEEecCC-ccc--CcceEEEEcCCC
Confidence 888777654 22 2478999999999999999999886643211 1112222333221 000 111111221111
Q ss_pred --cCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCC-HHHHHHHHHHHhCCCCCcceEEEeecceech-hhhccccccCC
Q 005134 284 --TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVIDIKPWVMHA-EVAEKFLCCYN 359 (712)
Q Consensus 284 --~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~-~va~~~~~~~g 359 (712)
+....++++. .++.+.+.+...... ...+ .+.+.++++.. +. ....++.....|.... ....++. .+
T Consensus 191 ~~~~~~~~~~P~--~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~-~~-l~~~~~~~~~~~~~~~~~~~~~~~--~~ 261 (295)
T TIGR02032 191 ISPGGYGWVFPK--GDGTANVGVGSRSAE---EGEDLKKYLKDFLARR-PE-LKDAETVEVIGAPIPIGRPDDKTV--RG 261 (295)
T ss_pred cCCCceEEEEeC--CCCeEEEeeeeccCC---CCCCHHHHHHHHHHhC-cc-cccCcEEeeeceeeccCCCCCccc--cC
Confidence 2233444444 334555543322221 1122 23333334332 11 1233444444444332 2344554 59
Q ss_pred cEEEEccCCccCCCCCCcchhhHHHHHHHHHHHH
Q 005134 360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393 (712)
Q Consensus 360 RV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkL 393 (712)
||+|+|||||.++|+.|||||+||+||..+|+.|
T Consensus 262 ~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 262 NVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998754
No 48
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.96 E-value=7.2e-27 Score=256.64 Aligned_cols=318 Identities=16% Similarity=0.183 Sum_probs=196.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
+||+||||||+|+++|+.|+++|++|+|+||+. ....+++..++++ +++++ |+.+++..... ..... .+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~~---~l~~l-~i~~~~~~~~~-----~~~~~-~~ 69 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPPC---LIEEF-DIPDSLIDRRV-----TQMRM-IS 69 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCHh---hhhhc-CCchHHHhhhc-----ceeEE-Ec
Confidence 699999999999999999999999999999983 3445678888875 45666 77666554321 11111 12
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
..|..+. .... ........++|..|++.|.+++.+.|+ +++.+ +++++..+
T Consensus 70 ~~~~~~~-~~~~--------~~~~~~~~~~r~~fd~~L~~~a~~~G~-------------------~v~~~-~v~~v~~~ 120 (388)
T TIGR02023 70 PSRVPIK-VTIP--------SEDGYVGMVRREVFDSYLRERAQKAGA-------------------ELIHG-LFLKLERD 120 (388)
T ss_pred CCCceee-eccC--------CCCCceEeeeHHHHHHHHHHHHHhCCC-------------------EEEee-EEEEEEEc
Confidence 2232211 1100 000112358999999999999998887 77665 59999988
Q ss_pred CCeEEEEEEec---cCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEE
Q 005134 204 DQCINVIASFL---KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (712)
Q Consensus 204 ~~~v~v~v~~~---~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (712)
++++++++... .++ +..+++|++||+|||.+|.||+.+|++.... ....+...|..++. .. ...+....+
T Consensus 121 ~~~~~v~~~~~~~~~~~--~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~-~~--~~~~~~~~~ 193 (388)
T TIGR02023 121 RDGVTLTYRTPKKGAGG--EKGSVEADVVIGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDD-KM--AYYEELADV 193 (388)
T ss_pred CCeEEEEEEeccccCCC--cceEEEeCEEEECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCch-hc--ccCCCeEEE
Confidence 88887777631 122 2357999999999999999999998763211 11112222321110 00 011112222
Q ss_pred Ee----ecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccc
Q 005134 281 IF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLC 356 (712)
Q Consensus 281 ~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~ 356 (712)
++ .|+..+++++.. +...+..... ....+.+...+.+++..+... .++.......+.....++|.
T Consensus 194 ~~~~~~~p~~y~wv~P~~---~~~~vg~~~~-----~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~ip~~~~~~~~- 262 (388)
T TIGR02023 194 YYGGEVSPDFYGWVFPKG---DHIAVGTGTG-----THGFDAKQLQANLRRRAGLDG--GQTIRREAAPIPMKPRPRWD- 262 (388)
T ss_pred EECCCcCCCceEEEeeCC---CeeEEeEEEC-----CCCCCHHHHHHHHHHhhCCCC--ceEeeeeeEecccccccccc-
Confidence 22 234444444432 2222222111 111234445555655544221 12222111222223445665
Q ss_pred cCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHH
Q 005134 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNT 421 (712)
Q Consensus 357 ~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~ 421 (712)
.+|++|+|||||.++|++|+|+++||.++..+|+.|+..+++. ....|..|+++.+..-....
T Consensus 263 -~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~-~~~~L~~Y~~~~~~~~~~~~ 325 (388)
T TIGR02023 263 -FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG-DATDLRHYERKFMKLYGTTF 325 (388)
T ss_pred -CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999988653 46789999998887654333
No 49
>PRK11445 putative oxidoreductase; Provisional
Probab=99.95 E-value=1.6e-26 Score=250.39 Aligned_cols=308 Identities=20% Similarity=0.273 Sum_probs=180.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC----CCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS----THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~----~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~ 119 (712)
+||+||||||+||++|+.|+++ ++|+|+||++... ..+++..++++++++|+++ |+.........+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~l-gl~~~~~~~~~~~------- 72 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKD-GLTLPKDVIANPQ------- 72 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHc-CCCCCcceeeccc-------
Confidence 7999999999999999999999 9999999998643 3468899999999999999 8742110000000
Q ss_pred eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (712)
Q Consensus 120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~ 199 (712)
...+..++.... ... ......+.++|..|+..|.+.+ +.++ ++++++++++
T Consensus 73 ------~~~~~~~~~~~~--~~~-~~~~~~~~i~R~~~~~~L~~~~-~~gv-------------------~v~~~~~v~~ 123 (351)
T PRK11445 73 ------IFAVKTIDLANS--LTR-NYQRSYINIDRHKFDLWLKSLI-PASV-------------------EVYHNSLCRK 123 (351)
T ss_pred ------cceeeEeccccc--chh-hcCCCcccccHHHHHHHHHHHH-hcCC-------------------EEEcCCEEEE
Confidence 000111111100 000 0111235689999999998854 4455 9999999999
Q ss_pred EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (712)
Q Consensus 200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (712)
++++++++.+++. .+|+ ..+++||+||+|||++|.+|++++.... ...+.. +..++.... ..+. ..
T Consensus 124 i~~~~~~~~v~~~--~~g~--~~~i~a~~vV~AdG~~S~vr~~l~~~~~-~~~~~~-~~~~~~~~~-------~~~~-~~ 189 (351)
T PRK11445 124 IWREDDGYHVIFR--ADGW--EQHITARYLVGADGANSMVRRHLYPDHQ-IRKYVA-IQQWFAEKH-------PVPF-YS 189 (351)
T ss_pred EEEcCCEEEEEEe--cCCc--EEEEEeCEEEECCCCCcHHhHHhcCCCc-hhhEEE-EEEEecCCC-------CCCC-cc
Confidence 9998888877653 2443 2479999999999999999999875421 111111 111222110 0011 11
Q ss_pred EEeecCC-eEEEEEecCCCCeEEEEEecCCCCCCCCCCCHH---HHHHHHHHHhCCCCCcceEEEeecceechhhhcccc
Q 005134 280 FIFNTEA-IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE---ICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFL 355 (712)
Q Consensus 280 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~ 355 (712)
.+|+++. .++.+..+.. +.+.+...+ +.. -..+ ...+.+.+ ++....+. +.....+.+.......+.
T Consensus 190 ~~f~~~~~~~~~W~~p~~-~~~~~g~~~-~~~-----~~~~~~~~l~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 260 (351)
T PRK11445 190 CIFDNEITDCYSWSISKD-GYFIFGGAY-PMK-----DGRERFETLKEKLSA-FGFQFGKP-VKTEACTVLRPSRWQDFV 260 (351)
T ss_pred eEEeccCCCceEEEeCCC-CcEEecccc-ccc-----chHHHHHHHHHHHHh-cccccccc-cccccccccCcccccccc
Confidence 1122221 1222222211 222211100 100 0111 11222222 22211111 011111111111122332
Q ss_pred ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHH
Q 005134 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417 (712)
Q Consensus 356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a 417 (712)
...+||+|||||||.++|+.|+|+|.|+.|+..|++.|.+. ....|+.|+...+...
T Consensus 261 ~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~-----~~~~~~~y~~~~~~~~ 317 (351)
T PRK11445 261 CGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQ-----PEKLNTAYWRKTRKLR 317 (351)
T ss_pred cCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhc-----ccchHHHHHHHHHHHH
Confidence 22489999999999999999999999999999999999753 2567999998877765
No 50
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.95 E-value=5.1e-25 Score=242.21 Aligned_cols=315 Identities=14% Similarity=0.141 Sum_probs=183.8
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
+||+||||||+|+++|+.|+++|++|+|+||+... ..+++..++. +.|+++ |+.+.+...... .... .+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~-~~~cg~~i~~---~~l~~~-g~~~~~~~~~i~-----~~~~-~~ 69 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN-AKPCGGAIPL---CMVDEF-ALPRDIIDRRVT-----KMKM-IS 69 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC-CCCccccccH---hhHhhc-cCchhHHHhhhc-----eeEE-ec
Confidence 58999999999999999999999999999998643 4567777765 556777 776554432111 1111 11
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE-
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA- 202 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~- 202 (712)
..+..+. +.. . . ........++|..|++.|.+++.+.|+ +++.++ +++++.
T Consensus 70 p~~~~~~-~~~--~--~---~~~~~~~~v~R~~~d~~L~~~a~~~G~-------------------~v~~~~-~~~i~~~ 121 (398)
T TIGR02028 70 PSNIAVD-IGR--T--L---KEHEYIGMLRREVLDSFLRRRAADAGA-------------------TLINGL-VTKLSLP 121 (398)
T ss_pred CCceEEE-ecc--C--C---CCCCceeeeeHHHHHHHHHHHHHHCCc-------------------EEEcce-EEEEEec
Confidence 1121110 000 0 0 001112368999999999999999887 887775 667653
Q ss_pred --cCCeEEEEEEecc----CCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCc
Q 005134 203 --TDQCINVIASFLK----EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG 276 (712)
Q Consensus 203 --~~~~v~v~v~~~~----~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (712)
.++.+++++...+ .|+ +.+++|++||+|||++|.||+.+|+... .....+...+..+... ....+.
T Consensus 122 ~~~~~~~~v~~~~~~~~~~~g~--~~~i~a~~VIgADG~~S~v~~~~g~~~~---~~~~~~~~~~~~~~~~---~~~~~~ 193 (398)
T TIGR02028 122 ADADDPYTLHYISSDSGGPSGT--RCTLEVDAVIGADGANSRVAKEIDAGDY---SYAIAFQERIRLPDEK---MAYYDD 193 (398)
T ss_pred cCCCceEEEEEeeccccccCCC--ccEEEeCEEEECCCcchHHHHHhCCCCc---ceEEEEEEEeeCChhh---cccCCC
Confidence 2345556554222 132 3579999999999999999999986421 1111111112111100 001112
Q ss_pred eEEEEe----ecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhc
Q 005134 277 MLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAE 352 (712)
Q Consensus 277 ~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~ 352 (712)
...+++ .|++.+|+++.. +...+.+..... ....+.+.+.++..........++.......+.....+
T Consensus 194 ~~~~~~g~~~~p~gY~WifP~~---~~~~VG~g~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ip~~~~~ 265 (398)
T TIGR02028 194 LAEMYVGDDVSPDFYGWVFPKC---DHVAVGTGTVAA-----KPEIKRLQSGIRARAAGKVAGGRIIRVEAHPIPEHPRP 265 (398)
T ss_pred eEEEEeCCCCCCCceEEEEECC---CeEEEEEEeCCC-----CccHHHHHHhhhhhhhhccCCCcEEEEEEEeccccccc
Confidence 222222 244455655543 222233321111 11223344444332211111112222222222222334
Q ss_pred cccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC---CchhhHHHHHHhhhH
Q 005134 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKP 415 (712)
Q Consensus 353 ~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~---a~~~lL~sY~~eRrp 415 (712)
++. .+|++|||||||.++|++|+|++.||.++..+|+.++..+... .....|..|++.-+.
T Consensus 266 ~~~--~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~ 329 (398)
T TIGR02028 266 RRV--VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDK 329 (398)
T ss_pred cEE--CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHH
Confidence 555 4899999999999999999999999999999999999887543 256789999986554
No 51
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.92 E-value=5e-23 Score=226.53 Aligned_cols=319 Identities=20% Similarity=0.204 Sum_probs=197.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCce-eecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA-HFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra-~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~ 120 (712)
+++||+||||||+|+++|+.|++.|++|+|+||+..+..++++ ..+.++.++-+... ...+ +...-. ....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~-~~~~-i~~~v~-----~~~~~ 74 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPD-FDEE-IERKVT-----GARIY 74 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCC-cchh-hheeee-----eeEEE
Confidence 5699999999999999999999999999999999999877776 78888877666543 2211 211110 11111
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
. . +..... . ......+.+.|..|++.|.+++.+.|+ +++.++++..+
T Consensus 75 ~--~-~~~~~~---------~--~~~~~~y~v~R~~fd~~La~~A~~aGa-------------------e~~~~~~~~~~ 121 (396)
T COG0644 75 F--P-GEKVAI---------E--VPVGEGYIVDRAKFDKWLAERAEEAGA-------------------ELYPGTRVTGV 121 (396)
T ss_pred e--c-CCceEE---------e--cCCCceEEEEhHHhhHHHHHHHHHcCC-------------------EEEeceEEEEE
Confidence 1 1 221110 0 000235678999999999999999998 99999999999
Q ss_pred EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEE
Q 005134 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (712)
Q Consensus 201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (712)
..+++++.+.+. .+. .+++|++||+|||.+|.+++++|+.......+...+.-....+ .........++
T Consensus 122 ~~~~~~~~~~~~---~~~---~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~-----~~~~~~~~~~~ 190 (396)
T COG0644 122 IREDDGVVVGVR---AGD---DEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVP-----DDGDVEEFLYG 190 (396)
T ss_pred EEeCCcEEEEEE---cCC---EEEEcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecC-----CCCceEEEEec
Confidence 999998877766 232 4799999999999999999999987221111111111111111 00000111112
Q ss_pred E--eecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCc-----ceEEEeecce-echhhhc
Q 005134 281 I--FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-----IDVIDIKPWV-MHAEVAE 352 (712)
Q Consensus 281 ~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~-----~~i~~~~~w~-~~~~va~ 352 (712)
. ..+.+.+|+++.. ++...+.+...... ..... .. +.++++...+... .++.....-. ....+..
T Consensus 191 ~~~~~~~Gy~wifP~~--~~~~~VG~g~~~~~---~~~~~-~~-~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~ 263 (396)
T COG0644 191 PLDVGPGGYGWIFPLG--DGHANVGIGVLLDD---PSLSP-FL-ELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPAS 263 (396)
T ss_pred CCccCCCceEEEEECC--CceEEEEEEEecCC---cCCCc-hH-HHHHHHHhCcccchhccCCceEEEeeeecccCCcCC
Confidence 1 2233444555443 33444443321111 11111 11 3444443322111 1222221111 1112222
Q ss_pred c-ccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHH
Q 005134 353 K-FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTA 422 (712)
Q Consensus 353 ~-~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~ 422 (712)
. +. .++++||||||..++|+.|.|+..||..|..+|..|.....+. ...|..|+.+.+........
T Consensus 264 ~~~~--~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~--~~~l~~Y~~~~~~~~~~~~~ 330 (396)
T COG0644 264 RPLV--GDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG--EEALAEYERLLRKSLAREDL 330 (396)
T ss_pred Cccc--cCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHH
Confidence 3 33 4899999999999999999999999999999999999887655 66778888877765544333
No 52
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.92 E-value=1.2e-23 Score=217.23 Aligned_cols=354 Identities=21% Similarity=0.258 Sum_probs=211.7
Q ss_pred CcccccccccCCCCccCCCC-cccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC--CC-------CCceeec
Q 005134 22 PYGYTQCRALSDSKTIVSNE-AVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF--ST-------HPQAHFI 87 (712)
Q Consensus 22 p~~~~~~~~~s~~~~~~~~~-~~~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~--~~-------~~ra~~i 87 (712)
|++.++....+....-+... .++||+||||||+|+++|..|... -.++.|+|-...+ .. .-|-..+
T Consensus 14 ~v~~t~~~~~~~~~s~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~ 93 (481)
T KOG3855|consen 14 AVRYTQRLDTRRTASAKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSI 93 (481)
T ss_pred ccccccccccccccccccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecC
Confidence 66677776666555434333 479999999999999999999965 5699999987332 11 1245678
Q ss_pred CHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHH-HHH
Q 005134 88 NNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK-QLE 166 (712)
Q Consensus 88 ~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~-~~~ 166 (712)
++++...|+.+ |.+|.+...-... ..++.-..+.....+. +++... ..+. .+.+....+.-.|+. .+.
T Consensus 94 s~~s~~~fk~~-~awd~i~~~R~~~--~~~~~v~Ds~s~a~I~-~~~d~~------~~d~-a~iien~nIq~sL~~s~~~ 162 (481)
T KOG3855|consen 94 SPASISLFKSI-GAWDHIFHDRYQK--FSRMLVWDSCSAALIL-FDHDNV------GIDM-AFIIENDNIQCSLYNSQLD 162 (481)
T ss_pred CcchHHHHHhc-CHHHHhhhhcccc--ccceeeecccchhhhh-hccccc------cccc-eeeeehhHHHHHHHHHHHh
Confidence 99999999999 9999886543221 1111111111111111 000000 0011 122222333444543 222
Q ss_pred hcCceeeccCccccccccccccceEEeCcEEEEEEE------cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhh
Q 005134 167 KLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA------TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR 240 (712)
Q Consensus 167 ~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~------~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR 240 (712)
+. .++++|....++..+.. .+++....+... +| ..+.+|+||||||.+|.||
T Consensus 163 s~-----------------~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~-dg----~~~~~~LLigAdg~Ns~vR 220 (481)
T KOG3855|consen 163 SE-----------------SDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLT-DG----INFATDLLIGADGFNSVVR 220 (481)
T ss_pred hh-----------------cCceeeecccceeeeccccccCCCCCcceEEEEec-cC----ceeeeceeeccccccchhh
Confidence 11 13458888887766654 234433333322 44 2789999999999999999
Q ss_pred cccCCCcccccccccEEEEEe-ecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHH
Q 005134 241 KLVGIDLVGEKDLQKLVSVHF-LSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE 319 (712)
Q Consensus 241 ~~lgi~~~g~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 319 (712)
+..++++.+..+.++.+.... ...+. ..++..+.-|-|.+...+.+....-..++|...- .....+..+++|
T Consensus 221 ~~snid~~~~ny~~havVAtl~l~~~~------~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~-~~a~~L~~lp~e 293 (481)
T KOG3855|consen 221 KASNIDVASWNYDQHAVVATLKLEEEA------ILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSP-ENASILKSLPEE 293 (481)
T ss_pred hhcCCCcccccccceeeeEEEEecccc------cccchhHHhcCCCCceeecccccccccceeecCH-HHHHHHhcCCch
Confidence 999999988776665544332 22111 1233445556666554454444333456665320 000111222333
Q ss_pred HHHHHHHHHh-------------------------------CC------CCCcceEEEe--ecceechhhhccccccCCc
Q 005134 320 ICEKLIFKLV-------------------------------GW------ELSDIDVIDI--KPWVMHAEVAEKFLCCYNQ 360 (712)
Q Consensus 320 ~~~~~i~~~~-------------------------------g~------~~~~~~i~~~--~~w~~~~~va~~~~~~~gR 360 (712)
++.+++...+ +. ++.-+++.+. ..|++....++.|. ..|
T Consensus 294 ~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV--~~~ 371 (481)
T KOG3855|consen 294 RFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYV--TDR 371 (481)
T ss_pred hHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhc--CCc
Confidence 3222222111 10 1111223222 24677888899998 499
Q ss_pred EEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc-C--CCchhhHHHHHHhhhHHH
Q 005134 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-D--IAPASILNTYETERKPIA 417 (712)
Q Consensus 361 V~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g--~a~~~lL~sY~~eRrp~a 417 (712)
+.|+|||||.++|..|||.|+|+.|+..|...|..++. | .++-.-|+-|+.+|.+.-
T Consensus 372 ~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N 431 (481)
T KOG3855|consen 372 VALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQHN 431 (481)
T ss_pred hhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhhc
Confidence 99999999999999999999999999999999998763 3 345678999999996643
No 53
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.91 E-value=5.2e-21 Score=210.42 Aligned_cols=305 Identities=17% Similarity=0.225 Sum_probs=171.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccce-eEeeec
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK-FIYCTS 123 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~-~~~~~~ 123 (712)
||+||||||+|+++|+.|++.|++|+|||+++... .++...+... .+.++ ++.+.+.. .|.. ..+. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~-~~~~~~~~~~---~~~~~-~~~~~~~~------~~~~~~~~~-~ 68 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP-GNHTYGVWDD---DLSDL-GLADCVEH------VWPDVYEYR-F 68 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC-CCccccccHh---hhhhh-chhhHHhh------cCCCceEEe-c
Confidence 79999999999999999999999999999987532 2333333332 23444 54332221 1111 1111 0
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
.+... ..+.....+++..|.+.|.+.+.+.|+ +++ ..++++++.+
T Consensus 69 -~~~~~--------------~~~~~~~~i~~~~l~~~l~~~~~~~gv-------------------~~~-~~~v~~i~~~ 113 (388)
T TIGR01790 69 -PKQPR--------------KLGTAYGSVDSTRLHEELLQKCPEGGV-------------------LWL-ERKAIHAEAD 113 (388)
T ss_pred -CCcch--------------hcCCceeEEcHHHHHHHHHHHHHhcCc-------------------EEE-ccEEEEEEec
Confidence 00000 012223468899999999999988776 664 5578888776
Q ss_pred -CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEe
Q 005134 204 -DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (712)
Q Consensus 204 -~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (712)
++.+.+++. +| .+++|++||+|||.+|.+++...... ..++....+.+..... .. ... ...++-+
T Consensus 114 ~~~~~~v~~~---~g----~~~~a~~VI~A~G~~s~~~~~~~~~~---~~~q~~~G~~~~~~~~-~~--~~~-~~~~~d~ 179 (388)
T TIGR01790 114 GVALSTVYCA---GG----QRIQARLVIDARGFGPLVQYVRFPLN---VGFQVAYGVEARLSRP-PH--GPS-SMVIMDA 179 (388)
T ss_pred CCceeEEEeC---CC----CEEEeCEEEECCCCchhcccccCCCC---ceEEEEEEEEEEEcCC-CC--CCC-ceEEEec
Confidence 555555543 34 26899999999999997764321111 1122233333322110 00 001 1111111
Q ss_pred ecC----------CeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHh---CCCCCcceEEEeecceechh
Q 005134 283 NTE----------AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHAE 349 (712)
Q Consensus 283 ~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~---g~~~~~~~i~~~~~w~~~~~ 349 (712)
... ..++++..+..++...+..... ......+.+...+.+.+.+ +.....+.......+++...
T Consensus 180 ~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~~~~~iP~~~~ 256 (388)
T TIGR01790 180 RVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSL---ADRPALPRDRLRQRILARLNAQGWQIKTIEEEEWGALPVGLP 256 (388)
T ss_pred cccccccccccCCCCceEEEeecCCCeEEEEeccc---cCCCCCCHHHHHHHHHHHHHHcCCeeeEEEeeeeEEEecccC
Confidence 100 0012222332222222211100 0112345566666666554 33222222122222333222
Q ss_pred hhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHH
Q 005134 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418 (712)
Q Consensus 350 va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~ 418 (712)
. . +. .+||+|+|||||.++|.+|+|+|.+++++..||+.|++.++.. ...+++.|+..-++.-.
T Consensus 257 ~-~-~~--~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 320 (388)
T TIGR01790 257 G-P-FL--PQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS-SELATAAWDGLWPTERR 320 (388)
T ss_pred C-C-cc--CCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHhchHHHH
Confidence 2 1 22 4899999999999999999999999999999999999887543 46889999765555443
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.90 E-value=7.1e-22 Score=219.03 Aligned_cols=330 Identities=15% Similarity=0.198 Sum_probs=179.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-ceeecCHhHHHHHHhhhcHHHHHHhcCCCccc--cc-
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVDL--WR- 116 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~-ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~--~~- 116 (712)
+.++|||||||||+|+++|+.|+++|++|+||||.+.+.... ++..++..+++.+- +++.. . .+.+. ..
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~--~~~~~----~-~~i~~~~~~~ 75 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAII--PGFAA----S-APVERKVTRE 75 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHc--ccccc----c-CCccccccce
Confidence 456999999999999999999999999999999998764432 34455554444331 12221 0 11110 01
Q ss_pred eeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcE
Q 005134 117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE 196 (712)
Q Consensus 117 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~ 196 (712)
.+.+.. ..+... ++.... ... ..+...+.+.|..|++.|.+++.+.|+ +++++++
T Consensus 76 ~~~~~~-~~~~~~--~~~~~~-~~~--~~~~~~~~v~R~~fd~~L~~~a~~~Gv-------------------~i~~~~~ 130 (429)
T PRK10015 76 KISFLT-EESAVT--LDFHRE-QPD--VPQHASYTVLRNRLDPWLMEQAEQAGA-------------------QFIPGVR 130 (429)
T ss_pred eEEEEe-CCCceE--eecccC-CCC--CCCcCceEeehhHHHHHHHHHHHHcCC-------------------EEECCcE
Confidence 111111 111111 111110 000 112234678899999999999998887 9999999
Q ss_pred EEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEE--eecC-c-ccccc-c
Q 005134 197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVH--FLSK-D-LGDYL-L 271 (712)
Q Consensus 197 v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~--~~~~-~-l~~~~-~ 271 (712)
|+.+..+++.+..... ++ .+++|++||+|||.+|.+++.+++...... ....+.+. +..+ + ..... .
T Consensus 131 V~~i~~~~~~v~~v~~---~~----~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~-~~~~~gvk~~~~~~~~~i~~~~~~ 202 (429)
T PRK10015 131 VDALVREGNKVTGVQA---GD----DILEANVVILADGVNSMLGRSLGMVPASDP-HHYAVGVKEVIGLTPEQINDRFNI 202 (429)
T ss_pred EEEEEEeCCEEEEEEe---CC----eEEECCEEEEccCcchhhhcccCCCcCCCc-CeEEEEEEEEEeCCHHHhhHhhcC
Confidence 9999877766543322 22 368999999999999999999987432211 11111211 1111 1 00000 0
Q ss_pred cCCCceEEEEee-cCC----eEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHh--CCCCCcceEEEeecc
Q 005134 272 NERPGMLFFIFN-TEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV--GWELSDIDVIDIKPW 344 (712)
Q Consensus 272 ~~~~~~~~~~~~-~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~--g~~~~~~~i~~~~~w 344 (712)
....+.+++++. +.. .|++.... +...+.+-..-........+.....+.+.+.. ......-+.......
T Consensus 203 ~~~~g~~w~~~g~~~~g~~g~G~~~~~~---d~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~ 279 (429)
T PRK10015 203 TGEEGAAWLFAGSPSDGLMGGGFLYTNK---DSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAH 279 (429)
T ss_pred CCCCCeEEEecCccCCCCCCceEEEEcC---CcEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeE
Confidence 111222222221 111 23443321 23332221100000001122232222222110 000001122221111
Q ss_pred eech---hhhccccccCCcEEEEccCCccCC--CCCCcchhhHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHhhhH
Q 005134 345 VMHA---EVAEKFLCCYNQIILAGDACHRFP--PAGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKP 415 (712)
Q Consensus 345 ~~~~---~va~~~~~~~gRV~LvGDAAH~~~--P~gG~G~n~gi~DA~~LawkLa~vl~-g~a~~~lL~sY~~eRrp 415 (712)
.+.. ...++.. .++++||||||..++ |+.|.||+.||..+...|..+...+. +.-+...|..|++.-+.
T Consensus 280 ~ip~gg~~~~~~~~--~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~ 354 (429)
T PRK10015 280 MVPEGGLAMVPQLV--NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQ 354 (429)
T ss_pred EcccCCcccCCccc--cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 1110 1123333 489999999999998 56999999999999999999988775 44456778999976554
No 55
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.89 E-value=1.8e-20 Score=208.03 Aligned_cols=331 Identities=16% Similarity=0.199 Sum_probs=178.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-ceeecCHhHHHHHHhhhcHHHHHHhcCCCccc---cc
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVDL---WR 116 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~-ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~---~~ 116 (712)
..++||+||||||+|+++|+.|+++|++|+||||.+.+.... .+..+...+++.+ ++.+. .. .+.+. ..
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l--~~~~~----~~-~~~~~~~~~~ 75 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHI--IPGFA----DS-APVERLITHE 75 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHH--hhhhh----hc-Ccccceeeee
Confidence 456999999999999999999999999999999998775433 3444555554433 11111 11 11110 01
Q ss_pred eeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcE
Q 005134 117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE 196 (712)
Q Consensus 117 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~ 196 (712)
.+.+. ...+.. .++....... ..+...+.+.|..|++.|.+.+.+.|+ +++.+++
T Consensus 76 ~~~~~-~~~~~~--~~~~~~~~~~---~~~~~~~~v~R~~fD~~L~~~a~~~Gv-------------------~i~~~~~ 130 (428)
T PRK10157 76 KLAFM-TEKSAM--TMDYCNGDET---SPSQRSYSVLRSKFDAWLMEQAEEAGA-------------------QLITGIR 130 (428)
T ss_pred eEEEE-cCCCce--eecccccccc---CCCCCceeeEHHHHHHHHHHHHHHCCC-------------------EEECCCE
Confidence 11111 111211 1111111000 112234567899999999999999887 9999999
Q ss_pred EEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEe--ecCc--cc-cccc
Q 005134 197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHF--LSKD--LG-DYLL 271 (712)
Q Consensus 197 v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~--~~~~--l~-~~~~ 271 (712)
|++++.+++.+..... ++. +++|++||+|||.+|.+++++|+...-. .....+.+.. ..+. .. .+..
T Consensus 131 V~~i~~~~g~v~~v~~---~g~----~i~A~~VI~A~G~~s~l~~~lgl~~~~~-~~~~av~~~~~~~~~~~~~~~~~~~ 202 (428)
T PRK10157 131 VDNLVQRDGKVVGVEA---DGD----VIEAKTVILADGVNSILAEKLGMAKRVK-PTDVAVGVKELIELPKSVIEDRFQL 202 (428)
T ss_pred EEEEEEeCCEEEEEEc---CCc----EEECCEEEEEeCCCHHHHHHcCCCCCCC-CcEEEEEEEEEEEcCHHHHHHhhcc
Confidence 9999887776543221 332 6899999999999999999998753211 1111121111 1110 00 0111
Q ss_pred cCCCceEEEEee-cCC----eEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCC--CCcceEEEeecc
Q 005134 272 NERPGMLFFIFN-TEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVIDIKPW 344 (712)
Q Consensus 272 ~~~~~~~~~~~~-~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~--~~~~~i~~~~~w 344 (712)
....+..+++.. +.. .|++... .....+.+-...........+.+...+.+.+..... ...-+......+
T Consensus 203 ~~~~g~~~~~~g~~~~g~~ggG~~~~~---~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~ 279 (428)
T PRK10157 203 QGNQGAACLFAGSPTDGLMGGGFLYTN---ENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAH 279 (428)
T ss_pred CCCCCeEEEEEECCCCCCcCceeEEEc---CCeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhh
Confidence 112233322222 211 2333321 122322221111100001122333333332211000 000011111111
Q ss_pred eec---hhhhccccccCCcEEEEccCCccCCC--CCCcchhhHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHhhhHH
Q 005134 345 VMH---AEVAEKFLCCYNQIILAGDACHRFPP--AGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPI 416 (712)
Q Consensus 345 ~~~---~~va~~~~~~~gRV~LvGDAAH~~~P--~gG~G~n~gi~DA~~LawkLa~vl~-g~a~~~lL~sY~~eRrp~ 416 (712)
.+. ....+++. .+++++|||||..++| +.|.|++.||..+..+|..+.+.++ +......|..|++.=+..
T Consensus 280 ~ip~~g~~~~~~~~--~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~ 355 (428)
T PRK10157 280 VVPEAGINMLPELV--GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG 355 (428)
T ss_pred HhhcCCcccCCcee--cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh
Confidence 110 01122333 4899999999999998 5899999999999999999988775 333556899999654443
No 56
>PLN02697 lycopene epsilon cyclase
Probab=99.87 E-value=3.1e-19 Score=200.31 Aligned_cols=314 Identities=17% Similarity=0.280 Sum_probs=178.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~ 120 (712)
...+||+||||||+||++|+.|++.|++|+|||+.... ++..+++. ..+..+ |+.+.+... |.....
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~---~~n~GvW~---~~l~~l-gl~~~i~~~------w~~~~v 172 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF---TNNYGVWE---DEFKDL-GLEDCIEHV------WRDTIV 172 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC---CCccccch---hHHHhc-CcHHHHHhh------cCCcEE
Confidence 44589999999999999999999999999999986322 22334443 456777 876655432 111111
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
+.. .+..+. .......+.|..|.+.|.+++.+.|+ ++ ++++|+++
T Consensus 173 ~~~-~~~~~~--------------~~~~Yg~V~R~~L~~~Ll~~a~~~GV-------------------~~-~~~~V~~I 217 (529)
T PLN02697 173 YLD-DDKPIM--------------IGRAYGRVSRTLLHEELLRRCVESGV-------------------SY-LSSKVDRI 217 (529)
T ss_pred Eec-CCceee--------------ccCcccEEcHHHHHHHHHHHHHhcCC-------------------EE-EeeEEEEE
Confidence 111 111110 01112368899999999999988776 66 67899999
Q ss_pred EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccc-cccccEEEEEeecCccccccccCCCceEE
Q 005134 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE-KDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (712)
Q Consensus 201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (712)
+++++++.+.+. .+| .+++|++||+|||++|. +.++....+. ...+....+.+...... + ... .+.+
T Consensus 218 ~~~~~~~~vv~~--~dG----~~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~-~--d~~-~~vl 285 (529)
T PLN02697 218 TEASDGLRLVAC--EDG----RVIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNP-Y--DPS-LMVF 285 (529)
T ss_pred EEcCCcEEEEEE--cCC----cEEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCC-C--Ccc-hhee
Confidence 888777654433 234 26899999999999993 2333221111 22333444433321110 1 111 1111
Q ss_pred EEeecCCeEEEEEecCCCCeEEEEEecCCCCCCC--------CCCCHHHHHHHHHHHh---CCCCCcceEEEeecceech
Q 005134 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNL--------EDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHA 348 (712)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~e~~~~~i~~~~---g~~~~~~~i~~~~~w~~~~ 348 (712)
+-+......-.-..+...-.|.|.+|+.+..... ...+.+.+++.+.+.+ |.....+........++..
T Consensus 286 MD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~iPm~g 365 (529)
T PLN02697 286 MDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGG 365 (529)
T ss_pred eccccccccccccccCCCceEEEEeecCCCeEEEEEeeeccCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeeecCCC
Confidence 1111000000000000011344444443321111 1234455555555544 3332222222222334433
Q ss_pred hhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC----------CchhhHHHHHHhhhHHHH
Q 005134 349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI----------APASILNTYETERKPIAE 418 (712)
Q Consensus 349 ~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~----------a~~~lL~sY~~eRrp~a~ 418 (712)
.. +.. .++++++||||..++|.+|+|+..++.+|..+|..++..++.. .....+..|+........
T Consensus 366 ~~-~~~---~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~ 441 (529)
T PLN02697 366 SL-PNT---EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERK 441 (529)
T ss_pred CC-ccc---CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHH
Confidence 22 223 3799999999999999999999999999999999999998533 235678888776555443
No 57
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.85 E-value=9.9e-20 Score=197.90 Aligned_cols=298 Identities=12% Similarity=0.181 Sum_probs=160.9
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCC--ccccceeEe
Q 005134 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP--VDLWRKFIY 120 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~--~~~~~~~~~ 120 (712)
||+|||||++||++|+.|++. |++|+|+|+.+..... ++.-.+ .. ++.+.+...-.+ ...|.....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~--------~tw~~~-~~-~~~~~~~~~~~~~v~~~W~~~~v 70 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN--------HTWSFF-DS-DLSDAQHAWLADLVQTDWPGYEV 70 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc--------ccceec-cc-ccchhhhhhhhhhheEeCCCCEE
Confidence 799999999999999999987 9999999998643211 111111 11 222211110000 011222111
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
.... ... .-+.....+.+.+|.+.|.+.+.. .++++++|+++
T Consensus 71 ~~~~---------------~~~-~l~~~Y~~I~r~~f~~~l~~~l~~----------------------~i~~~~~V~~v 112 (370)
T TIGR01789 71 RFPK---------------YRR-KLKTAYRSMTSTRFHEGLLQAFPE----------------------GVILGRKAVGL 112 (370)
T ss_pred ECcc---------------hhh-hcCCCceEEEHHHHHHHHHHhhcc----------------------cEEecCEEEEE
Confidence 1100 000 001234578888999888765432 36778899988
Q ss_pred EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceE-E
Q 005134 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML-F 279 (712)
Q Consensus 201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~ 279 (712)
+.++|+ +. +|. +++|++||+|||.+|..-.. ..+++++.+..+... .+ ....+..+ +
T Consensus 113 --~~~~v~--l~---dg~----~~~A~~VI~A~G~~s~~~~~--------~~~Q~f~G~~~r~~~--p~-~~~~~~lMD~ 170 (370)
T TIGR01789 113 --DADGVD--LA---PGT----RINARSVIDCRGFKPSAHLK--------GGFQVFLGREMRLQE--PH-GLENPIIMDA 170 (370)
T ss_pred --eCCEEE--EC---CCC----EEEeeEEEECCCCCCCcccc--------ceeeEEEEEEEEEcC--CC-CCCccEEEee
Confidence 345544 33 453 68999999999999852211 234555555444321 11 11111111 1
Q ss_pred EEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHh---CCCCCcceEEEeecceechh--hhccc
Q 005134 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHAE--VAEKF 354 (712)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~---g~~~~~~~i~~~~~w~~~~~--va~~~ 354 (712)
.+-..+...+++..+..+++..+.-++..+ ....+.+...+.+++.+ |.....+........++... ....+
T Consensus 171 ~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~---~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~ 247 (370)
T TIGR01789 171 TVDQLAGYRFVYVLPLGSHDLLIEDTYYAD---DPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLLGGDFSAYQ 247 (370)
T ss_pred eccCCCCceEEEECcCCCCeEEEEEEeccC---CCCCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeecCCCccccc
Confidence 111122223333344444444433221111 12334555555555443 43333332222222333221 12122
Q ss_pred cccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHH
Q 005134 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418 (712)
Q Consensus 355 ~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~ 418 (712)
.. .++|+++|||||.++|..|||+|.+++||..|+..+. +++.....++..|..+|+++..
T Consensus 248 ~~-~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~--~~~~~~~~~~~~~~~~~~~~~~ 308 (370)
T TIGR01789 248 DE-VRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD--LSSEQLAAFIDSRARRHWSKTG 308 (370)
T ss_pred cc-CCceeeeecccccccccccccHHHHHHHHHHHHhccC--cCccchhhhhhHHHHHHHHHhH
Confidence 22 3679999999999999999999999999999988773 1232234557899988888775
No 58
>PLN02463 lycopene beta cyclase
Probab=99.84 E-value=1.8e-18 Score=191.45 Aligned_cols=296 Identities=16% Similarity=0.211 Sum_probs=168.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~ 120 (712)
...+||+||||||+||++|+.|+++|++|+|||+++.. ..|+...+. .+.|+.+ |+.+.+...... ...+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~-~~p~~~g~w---~~~l~~l-gl~~~l~~~w~~-----~~v~ 95 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLS-IWPNNYGVW---VDEFEAL-GLLDCLDTTWPG-----AVVY 95 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccc-hhccccchH---HHHHHHC-CcHHHHHhhCCC-----cEEE
Confidence 44589999999999999999999999999999997643 223332222 3567777 888776543211 1112
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
... +... ........++|.+|.+.|++++.+.|+ +++ ..+|+++
T Consensus 96 ~~~--~~~~--------------~~~~~y~~V~R~~L~~~Ll~~~~~~GV-------------------~~~-~~~V~~I 139 (447)
T PLN02463 96 IDD--GKKK--------------DLDRPYGRVNRKKLKSKMLERCIANGV-------------------QFH-QAKVKKV 139 (447)
T ss_pred EeC--CCCc--------------cccCcceeEEHHHHHHHHHHHHhhcCC-------------------EEE-eeEEEEE
Confidence 111 1000 001123457899999999999988776 665 4689999
Q ss_pred EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEE
Q 005134 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (712)
Q Consensus 201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (712)
++++++++|++. +|. +++||+||+|||.+|.+++.-. .....++....+....... .+ .. ..+.++
T Consensus 140 ~~~~~~~~V~~~---dG~----~i~A~lVI~AdG~~s~l~~~~~---~~~~g~Q~a~Gi~~ev~~~-p~--d~-~~~vlM 205 (447)
T PLN02463 140 VHEESKSLVVCD---DGV----KIQASLVLDATGFSRCLVQYDK---PFNPGYQVAYGILAEVDSH-PF--DL-DKMLFM 205 (447)
T ss_pred EEcCCeEEEEEC---CCC----EEEcCEEEECcCCCcCccCCCC---CCCccceeeeeEEeecCCC-Cc--cc-ccchhh
Confidence 998888777664 452 7999999999999999875321 1122333333322221110 00 00 001110
Q ss_pred EeecCCeEE---EEEecCCCCeEEEEEecCCCCC--------CCCCCCHHHHHHHHHHHh---CCCCCcceEEEeeccee
Q 005134 281 IFNTEAIGV---LVAHDLKEGEFILQVPFYPPQQ--------NLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVM 346 (712)
Q Consensus 281 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~e~~~~~i~~~~---g~~~~~~~i~~~~~w~~ 346 (712)
-+.....+- +...+...-.|.+.+|+.+... .....+.+.+++.+.+.+ |....++........++
T Consensus 206 D~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~IPm 285 (447)
T PLN02463 206 DWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPM 285 (447)
T ss_pred hcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeEeeC
Confidence 000000000 0000000012333344322210 112234455555555443 33222221111122233
Q ss_pred chhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC
Q 005134 347 HAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI 400 (712)
Q Consensus 347 ~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~ 400 (712)
.. ..+.+ .+||+++||||..++|..|.|+-.++..+..+|..++..++..
T Consensus 286 g~-~~~~~---~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~ 335 (447)
T PLN02463 286 GG-PLPVI---PQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSS 335 (447)
T ss_pred CC-CCCCC---CCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 22 12233 3799999999999999999999999999999999999988643
No 59
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.83 E-value=8.3e-19 Score=179.44 Aligned_cols=350 Identities=19% Similarity=0.184 Sum_probs=208.0
Q ss_pred cCCCCccCCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCC
Q 005134 31 LSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP 110 (712)
Q Consensus 31 ~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~ 110 (712)
+.+.....++...+||+|||||.+|.++|..|+|.|-+|+||||.-.-..+--+..++|.+...|.+| ||.|.++..-.
T Consensus 33 ~~~~~~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~L-Gl~Dcve~IDA 111 (509)
T KOG1298|consen 33 VAETSVEARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKL-GLEDCVEGIDA 111 (509)
T ss_pred cchhhhhhccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHh-CHHHHhhcccc
Confidence 33344445567789999999999999999999999999999999977666666889999999999999 99999976542
Q ss_pred CccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccce
Q 005134 111 PVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE 190 (712)
Q Consensus 111 ~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (712)
... .-|....+|++.. +.++ ..++.. ......+.-.+|.+-|++.+...+. ++
T Consensus 112 Q~v----~Gy~ifk~gk~v~-~pyP-~~~f~~---d~~GrsFhnGRFvq~lR~ka~slpN------------------V~ 164 (509)
T KOG1298|consen 112 QRV----TGYAIFKDGKEVD-LPYP-LKNFPS---DPSGRSFHNGRFVQRLRKKAASLPN------------------VR 164 (509)
T ss_pred eEe----eeeEEEeCCceee-ccCC-CcCCCC---CcccceeeccHHHHHHHHHHhcCCC------------------eE
Confidence 211 1111112444432 2222 112221 1113345566788889998877653 45
Q ss_pred EEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCcccccc
Q 005134 191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL 270 (712)
Q Consensus 191 v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~ 270 (712)
+..|+ |.++-++++ +..-++.++.+ +++.+..|-+-|.|||..|.+||.|--+.. ......++.......++.
T Consensus 165 ~eeGt-V~sLlee~g-vvkGV~yk~k~-gee~~~~ApLTvVCDGcfSnlRrsL~~~~v-~~V~S~fVG~vl~N~~l~--- 237 (509)
T KOG1298|consen 165 LEEGT-VKSLLEEEG-VVKGVTYKNKE-GEEVEAFAPLTVVCDGCFSNLRRSLCDPKV-EEVPSYFVGLVLKNCRLP--- 237 (509)
T ss_pred Eeeee-HHHHHhccC-eEEeEEEecCC-CceEEEecceEEEecchhHHHHHHhcCCcc-cccchheeeeeecCCCCC---
Confidence 55554 334433333 32233322222 235688999999999999999999843221 113333444333332321
Q ss_pred ccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCC----------------HHHHHHHHHHHhCCCCC
Q 005134 271 LNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS----------------PEICEKLIFKLVGWELS 334 (712)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~e~~~~~i~~~~g~~~~ 334 (712)
.+...+.++......+++.....+-+..+.+| .+ +..... ++.+++.+.+.+...
T Consensus 238 ---~p~hghvIL~~pspil~Y~ISStEvRcl~~v~--g~--~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g-- 308 (509)
T KOG1298|consen 238 ---APNHGHVILSKPSPILVYQISSTEVRCLVDVP--GQ--KLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEG-- 308 (509)
T ss_pred ---CCCcceEEecCCCcEEEEEecchheEEEEecC--cc--cCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhcc--
Confidence 23334445543334444444333223333222 11 111111 122333333332211
Q ss_pred cceEEEeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc---CCCchhhHHHHHH
Q 005134 335 DIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYET 411 (712)
Q Consensus 335 ~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~---g~a~~~lL~sY~~ 411 (712)
.++.+ +.....+.... ...++|+|||-..-+|..|.||..++.|+..|-.+|.-..+ ...-...+.+|..
T Consensus 309 ~irsm-----pn~~mpa~~~~--~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~ 381 (509)
T KOG1298|consen 309 NIRSM-----PNSSMPATLND--KKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYW 381 (509)
T ss_pred chhcC-----ccccCCCCcCC--CCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence 11111 11222233332 47899999999999999999999999999999988865321 1112356789999
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 005134 412 ERKPIAEFNTALSVQNFRAA 431 (712)
Q Consensus 412 eRrp~a~~~~~~s~~~~~~~ 431 (712)
+|+|....+.-++..-++.+
T Consensus 382 ~RKp~s~tINtLa~Aly~vf 401 (509)
T KOG1298|consen 382 IRKPYSATINTLANALYQVF 401 (509)
T ss_pred hhcchhHHHHHHHHHHHHHh
Confidence 99998877766666555544
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.80 E-value=1.3e-17 Score=185.73 Aligned_cols=333 Identities=17% Similarity=0.238 Sum_probs=182.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHH--HHhcCCCcccccee-
Q 005134 45 PVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IERSQPPVDLWRKF- 118 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~G---i~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~--l~~~~~~~~~~~~~- 118 (712)
||+|||||++|.++|..|++.+ ++|+|||+...+.... +....|....+++.| ||.+. +.+.....+.-..|
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~v-Ge~~~p~~~~~~~~l-gi~e~~~~~~~~~~~k~g~~f~ 78 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGV-GESTLPSLRPFLRRL-GIDEADFMRACDATFKLGIRFV 78 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SS-EEE--THHHHCHHHH-T--HHHHCHHCT-EEESEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCc-cccchHHHHHHHHHc-CCChHHHHHHhCCeEeccEEee
Confidence 6999999999999999999999 9999999998775544 556677777899999 99877 55554332221111
Q ss_pred -------EeeecC--CCCeeeeecC----------CCcc---------------ccccc-----cCCccccccChhHHHH
Q 005134 119 -------IYCTSV--TGPILGSVDH----------MQPQ---------------DFEKV-----VSPVSVAHFSQYKLNK 159 (712)
Q Consensus 119 -------~~~~~~--~G~~l~~~~~----------~~~~---------------~~~~~-----~~p~~~~~i~q~~Le~ 159 (712)
.+.+.. .|..+...+. .... .+... ..-...++++|.+|++
T Consensus 79 ~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~ 158 (454)
T PF04820_consen 79 NWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQ 158 (454)
T ss_dssp SSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHH
T ss_pred ecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHH
Confidence 111111 1111111100 0000 00000 0112347899999999
Q ss_pred HHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134 160 LLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (712)
Q Consensus 160 ~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V 239 (712)
.|++.+.+.|+ +++.++ |+.++.++++....+... +| .+++|||||+|+|.+|.+
T Consensus 159 ~L~~~A~~~Gv-------------------~~~~g~-V~~v~~~~~g~i~~v~~~-~g----~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 159 FLRRHAEERGV-------------------EVIEGT-VVDVELDEDGRITAVRLD-DG----RTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHTT--------------------EEEET--EEEEEE-TTSEEEEEEET-TS----EEEEESEEEE-SGGG-CC
T ss_pred HHHHHHhcCCC-------------------EEEeCE-EEEEEEcCCCCEEEEEEC-CC----CEEEEeEEEECCCccchh
Confidence 99999999998 787774 788888777754455532 34 379999999999999998
Q ss_pred hcc-cCCCcccccccc---cEEEEEeecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCC
Q 005134 240 RKL-VGIDLVGEKDLQ---KLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLED 315 (712)
Q Consensus 240 R~~-lgi~~~g~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (712)
.++ |+.++....... ..+.+.....+ ...+... ....+.++.+.++...+.+. ..-+.. ..
T Consensus 214 ~~~~L~~~~~~~~~~L~~d~av~~~~~~~~------~~~~~T~-~~a~~~GW~W~IPL~~~~~~---G~V~s~-----~~ 278 (454)
T PF04820_consen 214 ARKALKVGFRDWSDWLPNDRAVAVQVPNED------PPEPYTR-STAFEAGWIWYIPLQNRRGS---GYVYSS-----DF 278 (454)
T ss_dssp CCCCT-EEEEEETTTCEEEEEEEEEEE-SS------CTTSSEE-EEEESSEEEEEEEESSEEEE---EEEEET-----TT
T ss_pred hHhhhcCCCccccccccccEEEEEecCcCC------CCCCcee-EEecCCceEEEccCCCcceE---EEEecc-----cc
Confidence 777 444433222111 11222221111 1112222 22223333444444322111 111111 12
Q ss_pred CCHHHHHHHHHHHhCCCCCcc-eEEEeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHH
Q 005134 316 FSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA 394 (712)
Q Consensus 316 ~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa 394 (712)
.+++...+.+.+.++...... ..+... ....+++. .+++++|||||..++|..+.|+.+++..+..|+..|.
T Consensus 279 ~s~~~A~~~l~~~l~~~~~~~~~~i~~~-----~g~~~~~~--~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~ 351 (454)
T PF04820_consen 279 ISDDEAEAELLAYLGGSPEAEPRHIRFR-----SGRRKQFW--GKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALP 351 (454)
T ss_dssp SHHHHHHHHHHHHHTCHCTTSCEEEE-S------EEESSSE--ETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHhcchhhhcchhhhccc-----ccchhhcc--cCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcc
Confidence 244555555555555332111 222211 11133443 3899999999999999999999999997777666654
Q ss_pred HHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134 395 SVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429 (712)
Q Consensus 395 ~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~ 429 (712)
.+...+.+++.|++.-+...+.+.+.-...|.
T Consensus 352 ---~~~~~~~~~~~Yn~~~~~~~~~~~~fi~~hY~ 383 (454)
T PF04820_consen 352 ---DDDFSPAALDRYNRRMRREYERIRDFISLHYQ 383 (454)
T ss_dssp ---CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445889999999988888877776655554
No 61
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.76 E-value=3.5e-16 Score=170.77 Aligned_cols=281 Identities=16% Similarity=0.275 Sum_probs=158.5
Q ss_pred CEEEECCCHHHHHHHHHH--HhCCCCEEEEcCCCCCC-CCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134 45 PVLIVGAGPVGLVLSILL--TKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~L--ar~Gi~v~lvEr~~~~~-~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~ 121 (712)
||+||||||+||++|..| ++.|.+|+|||+++... ...+...+.. ..+ +..+.+.... |......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~------~~~-~~~~~~v~~~-----w~~~~v~ 68 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWE------KDL-GPLDSLVSHR-----WSGWRVY 68 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccc------ccc-cchHHHHhee-----cCceEEE
Confidence 899999999999999999 88899999999987651 1111111111 111 2112222221 2211111
Q ss_pred ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (712)
Q Consensus 122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~ 201 (712)
.. .+... .....+..+.+.+|.+.|.+++. .+. .++++.+|++++
T Consensus 69 ~~-~~~~~--------------~~~~~Y~~i~~~~f~~~l~~~~~-~~~-------------------~~~~~~~V~~i~ 113 (374)
T PF05834_consen 69 FP-DGSRI--------------LIDYPYCMIDRADFYEFLLERAA-AGG-------------------VIRLNARVTSIE 113 (374)
T ss_pred eC-CCceE--------------EcccceEEEEHHHHHHHHHHHhh-hCC-------------------eEEEccEEEEEE
Confidence 11 11100 01123457899999999999988 443 678899999999
Q ss_pred EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEE-
Q 005134 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF- 280 (712)
Q Consensus 202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 280 (712)
.+++++.+++. +|. +++|++||+|+|..|...+.. .+++++.+...... ..+ ....+..+-|
T Consensus 114 ~~~~~~~v~~~---~g~----~i~a~~VvDa~g~~~~~~~~~--------~~Q~f~G~~v~~~~-~~f-~~~~~~lMD~r 176 (374)
T PF05834_consen 114 ETGDGVLVVLA---DGR----TIRARVVVDARGPSSPKARPL--------GLQHFYGWEVETDE-PVF-DPDTATLMDFR 176 (374)
T ss_pred ecCceEEEEEC---CCC----EEEeeEEEECCCccccccccc--------ccceeEEEEEeccC-CCC-CCCceEEEEec
Confidence 99987666654 453 799999999999777622222 23444444333321 101 0111111111
Q ss_pred Eeec-CCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHH---hCCCCCcceEEEeecceec-hhhhcccc
Q 005134 281 IFNT-EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKL---VGWELSDIDVIDIKPWVMH-AEVAEKFL 355 (712)
Q Consensus 281 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~---~g~~~~~~~i~~~~~w~~~-~~va~~~~ 355 (712)
.-+. +...+++..+...++..+...+..+. ...+.+.+++.+++. .|....++.-......+|. ......+
T Consensus 177 ~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~---~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G~IPm~~~~~~~~~- 252 (374)
T PF05834_consen 177 VPQSADGPSFLYVLPFSEDRALVEETSFSPR---PALPEEELKARLRRYLERLGIDDYEILEEERGVIPMTTGGFPPRF- 252 (374)
T ss_pred ccCCCCCceEEEEEEcCCCeEEEEEEEEcCC---CCCCHHHHHHHHHHHHHHcCCCceeEEEeecceeecccCCCcccc-
Confidence 1111 22334444444444444322211111 123445555555444 4544333322223334552 1222333
Q ss_pred ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHH
Q 005134 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395 (712)
Q Consensus 356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~ 395 (712)
.++|+.+|+||..+.|.+|+++-.++..+..+|..|+.
T Consensus 253 --~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 253 --GQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred --CCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 37899999999999999999999999888888877764
No 62
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.36 E-value=4.6e-12 Score=130.56 Aligned_cols=144 Identities=19% Similarity=0.282 Sum_probs=96.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--Cce-----eecCHhHHHHHHhhhcHHHHHHhcCCCcc
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--PQA-----HFINNRYALVFRKLDGLAEEIERSQPPVD 113 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~--~ra-----~~i~~rtmeilr~l~Gl~d~l~~~~~~~~ 113 (712)
..++||+||||||+||++|+.|++.|++|+|+||+..+... ..+ ..+....+++|+++ |+ +..
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~-gv---------~~~ 92 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEF-GI---------RYK 92 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHC-CC---------Cce
Confidence 45689999999999999999999999999999998765321 111 11222333334333 32 110
Q ss_pred ccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEe
Q 005134 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (712)
Q Consensus 114 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 193 (712)
. . ....+.+++..+...|.+.+.+.|+ ++++
T Consensus 93 ~-----------------~-------------~~g~~~vd~~~l~~~L~~~A~~~Gv-------------------~I~~ 123 (257)
T PRK04176 93 E-----------------V-------------EDGLYVADSVEAAAKLAAAAIDAGA-------------------KIFN 123 (257)
T ss_pred e-----------------e-------------cCcceeccHHHHHHHHHHHHHHcCC-------------------EEEc
Confidence 0 0 0001245677888999999998887 9999
Q ss_pred CcEEEEEEEcCC-eEE-EEEEec---cCC-ceeeEEEEecEEEeccCCCchhhccc
Q 005134 194 GHECVSVSATDQ-CIN-VIASFL---KEG-KCTERNIQCNILIGTDGAGSTVRKLV 243 (712)
Q Consensus 194 g~~v~~v~~~~~-~v~-v~v~~~---~~g-~~~~~~i~ad~VVgADG~~S~VR~~l 243 (712)
+++++++..+++ .+. +.+... ..+ .....+++|++||.|+|.+|.+.+.+
T Consensus 124 ~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 124 GVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred CceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 999999987665 332 111110 011 01135899999999999999998876
No 63
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.29 E-value=6.2e-11 Score=120.22 Aligned_cols=189 Identities=20% Similarity=0.168 Sum_probs=111.6
Q ss_pred ecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEe
Q 005134 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP 305 (712)
Q Consensus 226 ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 305 (712)
|.+.|.|||..|.+|+++.. .......+++........+ ..+...+.+.......+++.....+.+..+-+|
T Consensus 2 A~LtivaDG~~S~fRk~l~~--~~~~v~S~fvGl~l~~~~l------p~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp 73 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSD--NKPQVRSYFVGLILKDAPL------PKPNHGHVILGKPGPILLYQISSNETRVLVDVP 73 (276)
T ss_pred CCEEEEecCCchHHHHhhcC--CCCceeeeEEEEEEcCCCC------CCCCceEEEEcCCCcEEEEEcCCCceEEEEEeC
Confidence 68999999999999999872 2233344455444433322 123444555555555555555544444444444
Q ss_pred cC-CCCCCCCCC-----------CHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccCCcEEEEccCCccCCC
Q 005134 306 FY-PPQQNLEDF-----------SPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPP 373 (712)
Q Consensus 306 ~~-~~~~~~~~~-----------~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P 373 (712)
.. .+...-.++ -++.+++.+.+.+... .+.. .+.....+.... ...++++|||++..+|
T Consensus 74 ~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~--rirs-----MPn~~lp~~~~~--~~G~vllGDA~nmrHP 144 (276)
T PF08491_consen 74 GPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDG--RIRS-----MPNSFLPASPNW--KPGVVLLGDAANMRHP 144 (276)
T ss_pred CCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccC--Ccce-----ecccccCCCCCC--CCCEEEEehhhcCcCC
Confidence 22 111000000 0122222223332221 2221 112222222332 3689999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHH--HcCC-CchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134 374 AGGFGMNTGVQDAHNLAWKIASV--LKDI-APASILNTYETERKPIAEFNTALSVQNFRAA 431 (712)
Q Consensus 374 ~gG~G~n~gi~DA~~LawkLa~v--l~g~-a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~ 431 (712)
.+|+||+.|+.|+..|+..|... +.+. +-.+.+++|+.+|++....+.-+|..-|..+
T Consensus 145 LTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF 205 (276)
T PF08491_consen 145 LTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLF 205 (276)
T ss_pred ccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 99999999999999999999876 2222 2356899999999999887766776666554
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.29 E-value=2.7e-11 Score=124.48 Aligned_cols=143 Identities=19% Similarity=0.276 Sum_probs=93.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--ce-----eecCHhHHHHHHhhhcHHHHHHhcCCCccc
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QA-----HFINNRYALVFRKLDGLAEEIERSQPPVDL 114 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~--ra-----~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~ 114 (712)
.++||+||||||+||++|+.|+++|++|+|+||+..+.... .+ ..+...+.++++++ |+ +...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~-gi---------~~~~ 89 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEF-GI---------RYED 89 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHC-CC---------Ceee
Confidence 46899999999999999999999999999999998653111 11 11122233333333 22 1000
Q ss_pred cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (712)
Q Consensus 115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g 194 (712)
.+ ......++..+...|.+++.+.|+ +++++
T Consensus 90 ----------~~--------------------~g~~~~~~~el~~~L~~~a~e~GV-------------------~I~~~ 120 (254)
T TIGR00292 90 ----------EG--------------------DGYVVADSAEFISTLASKALQAGA-------------------KIFNG 120 (254)
T ss_pred ----------cc--------------------CceEEeeHHHHHHHHHHHHHHcCC-------------------EEECC
Confidence 00 001223556788889999988887 99999
Q ss_pred cEEEEEEEcCCe--EEEEEEec----cCCc-eeeEEEEecEEEeccCCCchhhccc
Q 005134 195 HECVSVSATDQC--INVIASFL----KEGK-CTERNIQCNILIGTDGAGSTVRKLV 243 (712)
Q Consensus 195 ~~v~~v~~~~~~--v~v~v~~~----~~g~-~~~~~i~ad~VVgADG~~S~VR~~l 243 (712)
+++.++..+++. |.-.+... ..|. ....+++|++||.|+|..|.+.+.+
T Consensus 121 t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 121 TSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred cEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 999999887763 32222110 0110 1136899999999999999877655
No 65
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.17 E-value=2e-09 Score=118.14 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=53.1
Q ss_pred ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV 230 (712)
.++-..+.+.|.+.+.+.|+ +++++++|++++.+++.+++++. ++ ++++|.||
T Consensus 141 ~i~p~~~~~~l~~~~~~~g~-------------------~~~~~~~V~~i~~~~~~~~v~~~---~~-----~i~a~~vV 193 (380)
T TIGR01377 141 VLYAEKALRALQELAEAHGA-------------------TVRDGTKVVEIEPTELLVTVKTT---KG-----SYQANKLV 193 (380)
T ss_pred EEcHHHHHHHHHHHHHHcCC-------------------EEECCCeEEEEEecCCeEEEEeC---CC-----EEEeCEEE
Confidence 34455777788888888776 89999999999988777665432 33 58899888
Q ss_pred eccCCC-chhhcccCCCcc
Q 005134 231 GTDGAG-STVRKLVGIDLV 248 (712)
Q Consensus 231 gADG~~-S~VR~~lgi~~~ 248 (712)
.|.|.. |.+++.+|+...
T Consensus 194 ~aaG~~~~~l~~~~g~~~~ 212 (380)
T TIGR01377 194 VTAGAWTSKLLSPLGIEIP 212 (380)
T ss_pred EecCcchHHHhhhcccCCC
Confidence 888875 778888876543
No 66
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.11 E-value=2.3e-10 Score=120.32 Aligned_cols=161 Identities=22% Similarity=0.275 Sum_probs=96.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCceeecCHh-HHHHHHhhhcHHHHHHhcCCCcc
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNR-YALVFRKLDGLAEEIERSQPPVD 113 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~------~~ra~~i~~r-tmeilr~l~Gl~d~l~~~~~~~~ 113 (712)
|+.+||+||||||+||.+|+.++++|.+|+|||+.+.+-. .+|....|.. .-+++.+.+|=...++..-....
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 3568999999999999999999999999999999987633 2333333322 22334443211111111000000
Q ss_pred ccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEe
Q 005134 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (712)
Q Consensus 114 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 193 (712)
.+..+.|+ ...|-.+..-+.. + .-| ..-.-..+.+.|+.++++.|+ +|+.
T Consensus 81 ~~d~i~~~-e~~Gi~~~e~~~G------r-~Fp---~sdkA~~Iv~~ll~~~~~~gV-------------------~i~~ 130 (408)
T COG2081 81 PEDFIDWV-EGLGIALKEEDLG------R-MFP---DSDKASPIVDALLKELEALGV-------------------TIRT 130 (408)
T ss_pred HHHHHHHH-HhcCCeeEEccCc------e-ecC---CccchHHHHHHHHHHHHHcCc-------------------EEEe
Confidence 00000010 0111111110000 0 000 011234577888999999987 9999
Q ss_pred CcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134 194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (712)
Q Consensus 194 g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (712)
++++.+++.++++..+... +|+ +|+||-||.|-|..|.
T Consensus 131 ~~~v~~v~~~~~~f~l~t~---~g~----~i~~d~lilAtGG~S~ 168 (408)
T COG2081 131 RSRVSSVEKDDSGFRLDTS---SGE----TVKCDSLILATGGKSW 168 (408)
T ss_pred cceEEeEEecCceEEEEcC---CCC----EEEccEEEEecCCcCC
Confidence 9999999999877666654 453 7999999999999884
No 67
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.09 E-value=4.7e-09 Score=118.13 Aligned_cols=119 Identities=16% Similarity=0.149 Sum_probs=72.3
Q ss_pred ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCC-eEEEEEEeccCCceeeEEEEecEE
Q 005134 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CINVIASFLKEGKCTERNIQCNIL 229 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~-~v~v~v~~~~~g~~~~~~i~ad~V 229 (712)
.++-..+...|.+.+.+.|+ +++++++|++++.+++ ++++++...++|+ ..+++|++|
T Consensus 174 ~Vdp~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~--~~~i~A~~V 232 (483)
T TIGR01320 174 DVDFGALTKQLLGYLVQNGT-------------------TIRFGHEVRNLKRQSDGSWTVTVKNTRTGG--KRTLNTRFV 232 (483)
T ss_pred EECHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEcCCCeEEEEEeeccCCc--eEEEECCEE
Confidence 45667788888888888887 9999999999998654 5666654333342 246899999
Q ss_pred EeccCC-CchhhcccCCCc-ccccccccEEEEEeecCccccccccCCCceEEEEeecCCeEEEEEe
Q 005134 230 IGTDGA-GSTVRKLVGIDL-VGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAH 293 (712)
Q Consensus 230 VgADG~-~S~VR~~lgi~~-~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~ 293 (712)
|.|-|. .+.+++.+|+.. .+... ..+...++... ..... ....+.+|..-+|+...+.++|
T Consensus 233 V~AAG~~s~~La~~~Gi~~~~~~~i-~P~~Gq~l~l~-~~~~~-~~~~~~IY~v~~p~~p~~~Vph 295 (483)
T TIGR01320 233 FVGAGGGALPLLQKSGIPEVKGFAG-FPVSGLFLRCG-NPELT-EQHRAKVYGQASVGAPPMSVPH 295 (483)
T ss_pred EECCCcchHHHHHHcCCCcCCCCce-eeeeEEEEEeC-CHHHH-hhcCeEEEecCCCCCCCcEEec
Confidence 555554 567888888874 22222 22222333321 11111 1234567777777654444433
No 68
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.08 E-value=4.4e-08 Score=111.36 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=53.7
Q ss_pred cChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEe
Q 005134 152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG 231 (712)
Q Consensus 152 i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVg 231 (712)
++-..|...|.+.+.+.|+ +++.+++|+++..+++.+.+++.+..+|+ ..+|+|++||.
T Consensus 152 vd~~rl~~~l~~~A~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~~~~~g~--~~~i~a~~VVn 210 (508)
T PRK12266 152 VDDARLVVLNARDAAERGA-------------------EILTRTRVVSARRENGLWHVTLEDTATGK--RYTVRARALVN 210 (508)
T ss_pred cCHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEeCCEEEEEEEEcCCCC--EEEEEcCEEEE
Confidence 4456666677777777787 99999999999888777777766433443 46799999999
Q ss_pred ccCCCch-hhc-ccCC
Q 005134 232 TDGAGST-VRK-LVGI 245 (712)
Q Consensus 232 ADG~~S~-VR~-~lgi 245 (712)
|.|++|. +.+ .+|+
T Consensus 211 AaG~wa~~l~~~~~g~ 226 (508)
T PRK12266 211 AAGPWVKQFLDDGLGL 226 (508)
T ss_pred CCCccHHHHHhhccCC
Confidence 9999874 444 3354
No 69
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.05 E-value=4.7e-09 Score=119.33 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=55.9
Q ss_pred ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV 230 (712)
.++..+|...|...+.+.|+ +++.+++|+++..+++.+.+++.+.. | ++.+++|++||
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~~~~-g--~~~~i~a~~VV 208 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGA-------------------TILTRTRCVSARREGGLWRVETRDAD-G--ETRTVRARALV 208 (502)
T ss_pred eecHHHHHHHHHHHHHHCCC-------------------EEecCcEEEEEEEcCCEEEEEEEeCC-C--CEEEEEecEEE
Confidence 45667788888888888887 99999999999988777777665322 3 35689999999
Q ss_pred eccCCCch-hhc-ccCC
Q 005134 231 GTDGAGST-VRK-LVGI 245 (712)
Q Consensus 231 gADG~~S~-VR~-~lgi 245 (712)
.|+|++|. +.+ .+|.
T Consensus 209 nAaG~wa~~l~~~~~g~ 225 (502)
T PRK13369 209 NAAGPWVTDVIHRVAGS 225 (502)
T ss_pred ECCCccHHHHHhhccCC
Confidence 99999974 444 3354
No 70
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.03 E-value=2.4e-09 Score=103.20 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=91.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CCc-----eeecCHhHHHHHHhhhcHHHHHHhcCCCccc
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQ-----AHFINNRYALVFRKLDGLAEEIERSQPPVDL 114 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~--~~r-----a~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~ 114 (712)
.+.||+||||||+||++|+.|++.|++|+||||+-.+-- .+. ...+...+-++|+++ |+. .+.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~-gI~---------ye~ 98 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEF-GIR---------YEE 98 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHh-CCc---------cee
Confidence 468999999999999999999999999999999987632 222 234555666777776 552 110
Q ss_pred cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (712)
Q Consensus 115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g 194 (712)
.. .| .+..+-..+...|..++-+.|. +|.-+
T Consensus 99 ~e--------~g----------------------~~v~ds~e~~skl~~~a~~aGa-------------------ki~n~ 129 (262)
T COG1635 99 EE--------DG----------------------YYVADSAEFASKLAARALDAGA-------------------KIFNG 129 (262)
T ss_pred cC--------Cc----------------------eEEecHHHHHHHHHHHHHhcCc-------------------eeeec
Confidence 00 00 1122334566667777778887 77777
Q ss_pred cEEEEEEEcCC-eEEEEEEec----cCCc-eeeEEEEecEEEeccCCCchhhcc
Q 005134 195 HECVSVSATDQ-CINVIASFL----KEGK-CTERNIQCNILIGTDGAGSTVRKL 242 (712)
Q Consensus 195 ~~v~~v~~~~~-~v~v~v~~~----~~g~-~~~~~i~ad~VVgADG~~S~VR~~ 242 (712)
+.|..+...++ +|.-.+.+= ..+. --+.++++++||.|.|-...|-+.
T Consensus 130 ~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~ 183 (262)
T COG1635 130 VSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSF 183 (262)
T ss_pred ceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHH
Confidence 77777766555 443222110 0000 013579999999999987665443
No 71
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.02 E-value=5e-09 Score=115.58 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=53.3
Q ss_pred ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV 230 (712)
.++-..+...|.+.+++.|+ +++++++|++++.+++++.+... ++ +++||.||
T Consensus 145 ~vd~~~l~~aL~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~~~---~g-----~i~ad~vV 197 (393)
T PRK11728 145 IVDYRAVAEAMAELIQARGG-------------------EIRLGAEVTALDEHANGVVVRTT---QG-----EYEARTLI 197 (393)
T ss_pred EECHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEecCCeEEEEEC---CC-----EEEeCEEE
Confidence 44567788888888888887 89999999999888777654432 33 58999999
Q ss_pred eccCCCch-hhcccCCC
Q 005134 231 GTDGAGST-VRKLVGID 246 (712)
Q Consensus 231 gADG~~S~-VR~~lgi~ 246 (712)
.|+|.+|. +.+.+|++
T Consensus 198 ~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 198 NCAGLMSDRLAKMAGLE 214 (393)
T ss_pred ECCCcchHHHHHHhCCC
Confidence 99999984 56666653
No 72
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.00 E-value=8.6e-09 Score=100.26 Aligned_cols=143 Identities=18% Similarity=0.261 Sum_probs=85.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--C-----ceeecCHhHHHHHHhhhcHHHHHHhcCCCcc
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--P-----QAHFINNRYALVFRKLDGLAEEIERSQPPVD 113 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~--~-----ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~ 113 (712)
..++||+||||||+||++|+.|++.|++|+||||+..+-.. . ....+...+.++|+++ |+. .+
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el-gi~---------y~ 84 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL-GIP---------YE 84 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH-T------------E
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC-Cce---------eE
Confidence 35699999999999999999999999999999999876322 1 1245556677888887 652 10
Q ss_pred ccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEe
Q 005134 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (712)
Q Consensus 114 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 193 (712)
.. ++ ..+..+-..+...|..++-+.|+ +|.-
T Consensus 85 ~~----------~~--------------------g~~v~d~~~~~s~L~s~a~~aGa-------------------kifn 115 (230)
T PF01946_consen 85 EY----------GD--------------------GYYVADSVEFTSTLASKAIDAGA-------------------KIFN 115 (230)
T ss_dssp E-----------SS--------------------EEEES-HHHHHHHHHHHHHTTTE-------------------EEEE
T ss_pred Ee----------CC--------------------eEEEEcHHHHHHHHHHHHhcCCC-------------------EEEe
Confidence 00 00 01223445666677777777776 7777
Q ss_pred CcEEEEEEEcC-CeEEEEEEec----cCC-ceeeEEEEecEEEeccCCCchhhcc
Q 005134 194 GHECVSVSATD-QCINVIASFL----KEG-KCTERNIQCNILIGTDGAGSTVRKL 242 (712)
Q Consensus 194 g~~v~~v~~~~-~~v~v~v~~~----~~g-~~~~~~i~ad~VVgADG~~S~VR~~ 242 (712)
.+.|..+...+ +.|.-.+..- ..| .--+.+|+|++||.|.|-.+.|-+.
T Consensus 116 ~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~ 170 (230)
T PF01946_consen 116 LTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVRV 170 (230)
T ss_dssp TEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTSH
T ss_pred eeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHHH
Confidence 88888876665 4444332210 000 0013589999999999988765443
No 73
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.99 E-value=5.1e-08 Score=108.15 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccC
Q 005134 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDG 234 (712)
Q Consensus 155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG 234 (712)
..+...|.+.+.+.|+ +++++++|++++.+++++++.+.. ++..+..+++||.||.|.|
T Consensus 197 ~~~~~~l~~~a~~~G~-------------------~i~~~~~V~~i~~~~~~~~v~~~~--~~~~~~~~i~a~~vV~a~G 255 (410)
T PRK12409 197 HKFTTGLAAACARLGV-------------------QFRYGQEVTSIKTDGGGVVLTVQP--SAEHPSRTLEFDGVVVCAG 255 (410)
T ss_pred HHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEEeCCEEEEEEEc--CCCCccceEecCEEEECCC
Confidence 4666777888888887 999999999999888877766542 2110013689999999999
Q ss_pred CCch-hhcccCC
Q 005134 235 AGST-VRKLVGI 245 (712)
Q Consensus 235 ~~S~-VR~~lgi 245 (712)
++|. +.+.++.
T Consensus 256 ~~s~~l~~~~~~ 267 (410)
T PRK12409 256 VGSRALAAMLGD 267 (410)
T ss_pred cChHHHHHHhCC
Confidence 9974 4444553
No 74
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.99 E-value=3.6e-09 Score=115.90 Aligned_cols=141 Identities=23% Similarity=0.375 Sum_probs=76.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCceeecC----------------HhHHHHHHhhhc-
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFIN----------------NRYALVFRKLDG- 100 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~------~~ra~~i~----------------~rtmeilr~l~G- 100 (712)
|||+||||||+||++|+.|++.|.+|+|+||++.+.. .+|....| ......|+++ +
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f-~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF-SP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS--H
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC-CH
Confidence 6999999999999999999999999999999986521 12222222 1122333333 2
Q ss_pred --HHHHHHhcCCCccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCcc
Q 005134 101 --LAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT 178 (712)
Q Consensus 101 --l~d~l~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~ 178 (712)
+.+-+.+.+.+... ...|+.+ |. .-.-..+..+|++++++.|+
T Consensus 80 ~d~~~ff~~~Gv~~~~--------~~~gr~f----------------P~---s~~a~~Vv~~L~~~l~~~gv-------- 124 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKI--------EEDGRVF----------------PK---SDKASSVVDALLEELKRLGV-------- 124 (409)
T ss_dssp HHHHHHHHHTT--EEE---------STTEEE----------------ET---T--HHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHhcCCeEEE--------cCCCEEC----------------CC---CCcHHHHHHHHHHHHHHcCC--------
Confidence 22222333322210 0011100 11 11235677889999999887
Q ss_pred ccccccccccceEEeCcEEEEEEEcCCe-EEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134 179 EGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (712)
Q Consensus 179 ~~~~~~~~~~~~v~~g~~v~~v~~~~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (712)
+|+++++|.+++.++++ +.+.. +++ .++.||.||-|-|..|.
T Consensus 125 -----------~i~~~~~V~~i~~~~~~~f~v~~---~~~----~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 125 -----------EIHFNTRVKSIEKKEDGVFGVKT---KNG----GEYEADAVILATGGKSY 167 (409)
T ss_dssp -----------EEE-S--EEEEEEETTEEEEEEE---TTT----EEEEESEEEE----SSS
T ss_pred -----------EEEeCCEeeeeeecCCceeEeec---cCc----ccccCCEEEEecCCCCc
Confidence 99999999999998887 44443 122 37999999999998874
No 75
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.98 E-value=5e-09 Score=114.72 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=33.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+++||+|||||++|+++|+.|+++|.+|+||||...
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 358999999999999999999999999999999864
No 76
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.97 E-value=6.1e-09 Score=112.57 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=52.1
Q ss_pred ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEE
Q 005134 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL 229 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~V 229 (712)
.++-..+.+.|.+.+.+.|+ +++.+++|++++.++++++ |.+. +| .++||.|
T Consensus 143 ~i~~~~l~~~l~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~v~gv~~~---~g-----~i~ad~v 195 (358)
T PF01266_consen 143 VIDPRRLIQALAAEAQRAGV-------------------EIRTGTEVTSIDVDGGRVTGVRTS---DG-----EIRADRV 195 (358)
T ss_dssp EEEHHHHHHHHHHHHHHTT--------------------EEEESEEEEEEEEETTEEEEEEET---TE-----EEEECEE
T ss_pred cccccchhhhhHHHHHHhhh-------------------hccccccccchhhccccccccccc---cc-----cccccee
Confidence 45567888889999999887 9999999999999999976 5543 33 4999999
Q ss_pred EeccCCCchh-hcccCC
Q 005134 230 IGTDGAGSTV-RKLVGI 245 (712)
Q Consensus 230 VgADG~~S~V-R~~lgi 245 (712)
|.|.|.+|.- .+.++.
T Consensus 196 V~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 196 VLAAGAWSPQLLPLLGL 212 (358)
T ss_dssp EE--GGGHHHHHHTTTT
T ss_pred Eecccccceeeeecccc
Confidence 9999999764 455555
No 77
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.95 E-value=8.7e-08 Score=106.22 Aligned_cols=36 Identities=42% Similarity=0.573 Sum_probs=32.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi-~v~lvEr~~ 76 (712)
...+||+|||||++|+++|+.|+++ |. +|+||||..
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 5669999999999999999999995 96 899999975
No 78
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.95 E-value=1.2e-08 Score=110.76 Aligned_cols=181 Identities=14% Similarity=0.207 Sum_probs=100.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCC---ce------eecCHhHH--HHHHhhh-cHHHHHHh
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTHP---QA------HFINNRYA--LVFRKLD-GLAEEIER 107 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~~~~~---ra------~~i~~rtm--eilr~l~-Gl~d~l~~ 107 (712)
+++||+|||||++|+++|..|++++ ++|+|+||...+..+. .+ ....+.++ ++...-. -..+-..+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999 9999999998763221 11 11122211 1111100 00111111
Q ss_pred cCCCccccceeEeeecCCC-------------CeeeeecCCCcc---cccc---------ccCCccccccChhHHHHHHH
Q 005134 108 SQPPVDLWRKFIYCTSVTG-------------PILGSVDHMQPQ---DFEK---------VVSPVSVAHFSQYKLNKLLL 162 (712)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G-------------~~l~~~~~~~~~---~~~~---------~~~p~~~~~i~q~~Le~~L~ 162 (712)
.+.+......+...++... ..+......... ..+. ...|. ...++-..+...|.
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~-~giV~~~~~t~~l~ 160 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPS-GGIVDPGELTRALA 160 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCC-CceEcHHHHHHHHH
Confidence 2222211112222211100 000000000000 0110 11122 22344566777888
Q ss_pred HHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch-hhc
Q 005134 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-VRK 241 (712)
Q Consensus 163 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~-VR~ 241 (712)
+.+...|+ +++++++|+.++..++++++... .+|+ +. ++|++||.|-|..|- +-+
T Consensus 161 e~a~~~g~-------------------~i~ln~eV~~i~~~~dg~~~~~~--~~g~--~~-~~ak~Vin~AGl~Ad~la~ 216 (429)
T COG0579 161 EEAQANGV-------------------ELRLNTEVTGIEKQSDGVFVLNT--SNGE--ET-LEAKFVINAAGLYADPLAQ 216 (429)
T ss_pred HHHHHcCC-------------------EEEecCeeeEEEEeCCceEEEEe--cCCc--EE-EEeeEEEECCchhHHHHHH
Confidence 88888887 99999999999999997544433 3453 22 999999999998864 667
Q ss_pred ccCCCc
Q 005134 242 LVGIDL 247 (712)
Q Consensus 242 ~lgi~~ 247 (712)
..|++.
T Consensus 217 ~~g~~~ 222 (429)
T COG0579 217 MAGIPE 222 (429)
T ss_pred HhCCCc
Confidence 777665
No 79
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.93 E-value=1.7e-08 Score=113.74 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=55.2
Q ss_pred ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCe-EEEEEEeccCCceeeEEEEecEE
Q 005134 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNIL 229 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~-v~v~v~~~~~g~~~~~~i~ad~V 229 (712)
.++...+.+.|.+.+++.|. ++++++++|++++.++++ +++++....+|+ ..+++|++|
T Consensus 179 ~Vd~~~l~~aL~~~a~~~Gg------------------v~i~~~teV~~I~~~~dg~~~v~~~~~~~G~--~~~i~A~~V 238 (494)
T PRK05257 179 DVNFGALTRQLVGYLQKQGN------------------FELQLGHEVRDIKRNDDGSWTVTVKDLKTGE--KRTVRAKFV 238 (494)
T ss_pred EECHHHHHHHHHHHHHhCCC------------------eEEEeCCEEEEEEECCCCCEEEEEEEcCCCc--eEEEEcCEE
Confidence 56667888889898888762 399999999999986665 666654322342 236899999
Q ss_pred EeccCCC-chhhcccCCC
Q 005134 230 IGTDGAG-STVRKLVGID 246 (712)
Q Consensus 230 VgADG~~-S~VR~~lgi~ 246 (712)
|.|.|++ +.+++.+|+.
T Consensus 239 VvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 239 FIGAGGGALPLLQKSGIP 256 (494)
T ss_pred EECCCcchHHHHHHcCCC
Confidence 8777766 5678888765
No 80
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.90 E-value=2.8e-08 Score=111.11 Aligned_cols=165 Identities=17% Similarity=0.141 Sum_probs=90.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~ 121 (712)
...+|+||||||+||++|..|.+.|++++||||++..- .....++++-. +.+ ++..... ......+... .
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG---G~W~~~~~~~~--d~~-~~~~~~~--~~~s~~Y~~L--~ 78 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG---GLWVYTPKSES--DPL-SLDPTRS--IVHSSVYESL--R 78 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc---ceeecCCCcCC--Ccc-ccCCCCc--ccchhhhhhh--h
Confidence 35789999999999999999999999999999998642 11112221100 001 1100000 0000000000 0
Q ss_pred ecCCCCeeeee-cCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 122 TSVTGPILGSV-DHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 122 ~~~~G~~l~~~-~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
++ ..+....+ +.+....+.. .........+...+.+.|.+.++..++. ..|+|+++|+++
T Consensus 79 tn-~p~~~m~f~dfp~~~~~~~-~~~~~~~fp~~~ev~~YL~~~a~~fgl~-----------------~~I~~~t~V~~V 139 (461)
T PLN02172 79 TN-LPRECMGYRDFPFVPRFDD-ESRDSRRYPSHREVLAYLQDFAREFKIE-----------------EMVRFETEVVRV 139 (461)
T ss_pred cc-CCHhhccCCCCCCCccccc-ccCcCCCCCCHHHHHHHHHHHHHHcCCc-----------------ceEEecCEEEEE
Confidence 00 00000000 1110000000 0000011234567888999999888761 149999999999
Q ss_pred EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (712)
Q Consensus 201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (712)
+..++.++|++.. ++. ...+..+|.||.|.|..+.
T Consensus 140 ~~~~~~w~V~~~~--~~~-~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 140 EPVDGKWRVQSKN--SGG-FSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred eecCCeEEEEEEc--CCC-ceEEEEcCEEEEeccCCCC
Confidence 9888888777763 221 2235689999999998653
No 81
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.89 E-value=1.8e-09 Score=120.22 Aligned_cols=154 Identities=22% Similarity=0.308 Sum_probs=38.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----ceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~----ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~ 120 (712)
|||||||||+|+++|+.+++.|.+|+||||.+.+-... ..........+ ....|+.+++.+.......
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~--~~~~gi~~e~~~~~~~~~~------ 72 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED--QVIGGIFREFLNRLRARGG------ 72 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH--HHHHHHHHHHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh--ccCCCHHHHHHHHHhhhcc------
Confidence 79999999999999999999999999999998752211 11122222222 1123666666654322100
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
.. .. .. ..+.....+....++.+|.+.+.+.|+ +|++++.++++
T Consensus 73 ------~~---~~--~~------~~~~~~~~~~~~~~~~~l~~~l~e~gv-------------------~v~~~t~v~~v 116 (428)
T PF12831_consen 73 ------YP---QE--DR------YGWVSNVPFDPEVFKAVLDEMLAEAGV-------------------EVLLGTRVVDV 116 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------cc---cc--cc------ccccccccccccccccccccccccccc-------------------ccccccccccc
Confidence 00 00 00 000001234455566677777766676 99999999999
Q ss_pred EEcCCeEE-EEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCc
Q 005134 201 SATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL 247 (712)
Q Consensus 201 ~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~ 247 (712)
..+++.|+ |++... +| ..+|+|+++|.|+|- ..+-...|.++
T Consensus 117 ~~~~~~i~~V~~~~~-~g---~~~i~A~~~IDaTG~-g~l~~~aG~~~ 159 (428)
T PF12831_consen 117 IRDGGRITGVIVETK-SG---RKEIRAKVFIDATGD-GDLAALAGAPY 159 (428)
T ss_dssp ------------------------------------------------
T ss_pred ccccccccccccccc-cc---ccccccccccccccc-ccccccccccc
Confidence 98876543 333322 23 468999999999995 45555666654
No 82
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.88 E-value=9.6e-09 Score=102.15 Aligned_cols=138 Identities=24% Similarity=0.288 Sum_probs=76.0
Q ss_pred EEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeecCC
Q 005134 47 LIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVT 125 (712)
Q Consensus 47 lIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~~~ 125 (712)
+||||||+||++|..|.++|++ ++||||++.+- |.+....... ...... + + ....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~G--------------------g~w~~~~~~~-~~~~~~-~-~-~~~~ 56 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPG--------------------GVWRRYYSYT-RLHSPS-F-F-SSDF 56 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSST--------------------THHHCH-TTT-T-BSSS-C-C-TGGS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCC--------------------CeeEEeCCCC-ccccCc-c-c-cccc
Confidence 6999999999999999999999 99999987641 1111100000 000000 0 0 0000
Q ss_pred CCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCC
Q 005134 126 GPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ 205 (712)
Q Consensus 126 G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~ 205 (712)
+ +..+.......... .+......++..+.+.|.+.+++++. +++++++|++++.+++
T Consensus 57 ~--~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~yl~~~~~~~~l-------------------~i~~~~~V~~v~~~~~ 113 (203)
T PF13738_consen 57 G--LPDFESFSFDDSPE--WRWPHDFPSGEEVLDYLQEYAERFGL-------------------EIRFNTRVESVRRDGD 113 (203)
T ss_dssp S----CCCHSCHHHHHH--HHHSBSSEBHHHHHHHHHHHHHHTTG-------------------GEETS--EEEEEEETT
T ss_pred c--CCcccccccccCCC--CCCCcccCCHHHHHHHHHHHHhhcCc-------------------ccccCCEEEEEEEecc
Confidence 0 00000000000000 00012246677888889888888877 7999999999999999
Q ss_pred eEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134 206 CINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (712)
Q Consensus 206 ~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (712)
+.++++. ++ .+++|+.||.|-|..|.
T Consensus 114 ~w~v~~~---~~----~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 114 GWTVTTR---DG----RTIRADRVVLATGHYSH 139 (203)
T ss_dssp TEEEEET---TS-----EEEEEEEEE---SSCS
T ss_pred EEEEEEE---ec----ceeeeeeEEEeeeccCC
Confidence 9877774 34 37889999999998765
No 83
>PRK07233 hypothetical protein; Provisional
Probab=98.86 E-value=3.6e-07 Score=101.97 Aligned_cols=59 Identities=25% Similarity=0.418 Sum_probs=44.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-----c-------eee---cCHhHHHHHHhhhcHHHH
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-----Q-------AHF---INNRYALVFRKLDGLAEE 104 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~-----r-------a~~---i~~rtmeilr~l~Gl~d~ 104 (712)
+|+|||||++||++|..|+++|++|+|+|+++.+--.- . ++. -.+...++++++ |+.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~l-g~~~~ 74 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDEL-GLEDK 74 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHc-CCCCc
Confidence 69999999999999999999999999999998652211 0 111 235567888887 77544
No 84
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.86 E-value=7.7e-08 Score=107.82 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=55.8
Q ss_pred cccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceEEeCcEEEEEEEc-CCeEEEEEEeccCCceeeEEEEec
Q 005134 150 AHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCINVIASFLKEGKCTERNIQCN 227 (712)
Q Consensus 150 ~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~-~~~v~v~v~~~~~g~~~~~~i~ad 227 (712)
..++...|.+.|.+.+.+. |+ +++++++|++++.+ ++++++++....++. ..+++||
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv-------------------~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~--~~~i~Ad 237 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNA-------------------QVKYNHEVVDLERLSDGGWEVTVKDRNTGE--KREQVAD 237 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCc-------------------EEEeCCEEEEEEECCCCCEEEEEEecCCCc--eEEEEcC
Confidence 4677778888888888643 55 99999999999887 666776654222331 2368999
Q ss_pred EEEeccCCCc-hhhcccCCCc
Q 005134 228 ILIGTDGAGS-TVRKLVGIDL 247 (712)
Q Consensus 228 ~VVgADG~~S-~VR~~lgi~~ 247 (712)
+||-|-|++| .+.+.+|+..
T Consensus 238 ~VV~AAGawS~~La~~~Gi~~ 258 (497)
T PRK13339 238 YVFIGAGGGAIPLLQKSGIPE 258 (497)
T ss_pred EEEECCCcchHHHHHHcCCCc
Confidence 9987777776 5777787653
No 85
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.85 E-value=3.5e-07 Score=101.60 Aligned_cols=34 Identities=21% Similarity=0.552 Sum_probs=31.8
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+||+|||||++||++|+.|+++|++|+|+||...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 3799999999999999999999999999999853
No 86
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.83 E-value=2.5e-07 Score=96.81 Aligned_cols=168 Identities=24% Similarity=0.257 Sum_probs=93.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCCC-ceeecCHhHHHHH-HhhhcHHHHHHhcCCCc
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTHP-QAHFINNRYALVF-RKLDGLAEEIERSQPPV 112 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~------Gi~v~lvEr~~~~~~~~-ra~~i~~rtmeil-r~l~Gl~d~l~~~~~~~ 112 (712)
.+++||+||||||+||++|+.|.+. .++|+|+||...+-.|. .+..|.|.++..| -.+ ++.+.|.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~w-------ke~~apl 146 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDW-------KEDGAPL 146 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcch-------hhcCCcc
Confidence 3568999999999999999999765 57999999999874432 3445556544222 111 2233332
Q ss_pred ccc---ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccc
Q 005134 113 DLW---RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR 189 (712)
Q Consensus 113 ~~~---~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (712)
... ..+.+. .+..-..++.+.+-+ ....+.++-..|.+.|-+.+++.|+
T Consensus 147 ~t~vT~d~~~fL---t~~~~i~vPv~~pm~------NhGNYvv~L~~~v~wLg~kAEe~Gv------------------- 198 (621)
T KOG2415|consen 147 NTPVTSDKFKFL---TGKGRISVPVPSPMD------NHGNYVVSLGQLVRWLGEKAEELGV------------------- 198 (621)
T ss_pred cccccccceeee---ccCceeecCCCcccc------cCCcEEEEHHHHHHHHHHHHHhhCc-------------------
Confidence 211 112221 121111111111100 0112455667899999999999998
Q ss_pred eEEeCcEEEEEEEcCCeEEEEEEecc-----CCcee-----eEEEEecEEEeccCCCchhhccc
Q 005134 190 EILMGHECVSVSATDQCINVIASFLK-----EGKCT-----ERNIQCNILIGTDGAGSTVRKLV 243 (712)
Q Consensus 190 ~v~~g~~v~~v~~~~~~v~v~v~~~~-----~g~~~-----~~~i~ad~VVgADG~~S~VR~~l 243 (712)
+|.-+..+..+-.++|+-..-+...| +|... --.+.|+.-|-|.|.|..+-+++
T Consensus 199 EiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi 262 (621)
T KOG2415|consen 199 EIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQI 262 (621)
T ss_pred eeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHH
Confidence 44444444444333333211111111 11100 12588999999999997776654
No 87
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.83 E-value=3.6e-07 Score=103.12 Aligned_cols=60 Identities=27% Similarity=0.415 Sum_probs=44.7
Q ss_pred CEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCC-------C-----ceee---cCHhHHHHHHhhhcHHH
Q 005134 45 PVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTH-------P-----QAHF---INNRYALVFRKLDGLAE 103 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~------Gi~v~lvEr~~~~~~~-------~-----ra~~---i~~rtmeilr~l~Gl~d 103 (712)
+|+|||||++||++|..|++. |++|+|+|+++.+--+ + .++. -.+..+++++++ |+.+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~l-gl~~ 81 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDL-NLEE 81 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHc-CCcc
Confidence 599999999999999999986 4899999999754111 0 1111 235678888888 8865
Q ss_pred HH
Q 005134 104 EI 105 (712)
Q Consensus 104 ~l 105 (712)
.+
T Consensus 82 ~~ 83 (463)
T PRK12416 82 EM 83 (463)
T ss_pred ce
Confidence 54
No 88
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.82 E-value=4.5e-08 Score=109.99 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=50.9
Q ss_pred ccChhHHHHHHHHHHHh----cCceeeccCccccccccccccceEEeCcEEEEEEEcCC-eEEEEEEeccCCceeeEEEE
Q 005134 151 HFSQYKLNKLLLKQLEK----LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CINVIASFLKEGKCTERNIQ 225 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~-~v~v~v~~~~~g~~~~~~i~ 225 (712)
.++-..|...|.+.+.+ .|. +++++++++|++++.+++ .+.|+. ++| +++
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~-----------------~v~i~~~t~V~~I~~~~~~~~~V~T---~~G-----~i~ 261 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGK-----------------KISINLNTEVLNIERSNDSLYKIHT---NRG-----EIR 261 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCC-----------------CEEEEeCCEEEEEEecCCCeEEEEE---CCC-----EEE
Confidence 45556777888888887 663 138999999999998744 444433 233 589
Q ss_pred ecEEEeccCCCch-hhcccCC
Q 005134 226 CNILIGTDGAGST-VRKLVGI 245 (712)
Q Consensus 226 ad~VVgADG~~S~-VR~~lgi 245 (712)
||+||.|-|++|. +-+.+|+
T Consensus 262 A~~VVvaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 262 ARFVVVSACGYSLLFAQKMGY 282 (497)
T ss_pred eCEEEECcChhHHHHHHHhCC
Confidence 9999999999984 5666665
No 89
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.81 E-value=8.1e-08 Score=108.72 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=85.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCce---eecCH-hHHHHHHhhhcHHHHHH-hcCCCccc
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQA---HFINN-RYALVFRKLDGLAEEIE-RSQPPVDL 114 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~-~~~~ra---~~i~~-rtmeilr~l~Gl~d~l~-~~~~~~~~ 114 (712)
+.++||+||||||+|+.+|+.+++.|.+|+|||++... ...++. .++.. ...+-++.++|+...+. ..+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq--- 78 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ--- 78 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc---
Confidence 34699999999999999999999999999999998522 111111 11111 11222233322222221 11111
Q ss_pred cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (712)
Q Consensus 115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g 194 (712)
+.......|... ..+ ...+++..+...|.+.+.+.+. +++ +.
T Consensus 79 ---~r~ln~skGpAV--------------~s~--RaQiDr~ly~kaL~e~L~~~~n------------------V~I-~q 120 (618)
T PRK05192 79 ---FRMLNTSKGPAV--------------RAL--RAQADRKLYRAAMREILENQPN------------------LDL-FQ 120 (618)
T ss_pred ---eeecccCCCCce--------------eCc--HHhcCHHHHHHHHHHHHHcCCC------------------cEE-EE
Confidence 000000011100 011 1356777888888888876532 365 45
Q ss_pred cEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 195 ~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
.+++++..+++.|..... .+| ..+.|+.||.|+|..+
T Consensus 121 ~~V~~Li~e~grV~GV~t--~dG----~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 121 GEVEDLIVENGRVVGVVT--QDG----LEFRAKAVVLTTGTFL 157 (618)
T ss_pred eEEEEEEecCCEEEEEEE--CCC----CEEECCEEEEeeCcch
Confidence 678888777776542222 244 3799999999999765
No 90
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.81 E-value=8.3e-07 Score=98.62 Aligned_cols=185 Identities=15% Similarity=0.167 Sum_probs=106.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-CCceeecCHhHHHHHHhhh-c-HHHHH------HhcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-HPQAHFINNRYALVFRKLD-G-LAEEI------ERSQPP 111 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~-~~ra~~i~~rtmeilr~l~-G-l~d~l------~~~~~~ 111 (712)
+.++||+|||||+.|+-.|..++.+|++|+|+|++..-+- .++.+.+-..+++.+.+.. + +.+.+ .+.++.
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence 4779999999999999999999999999999999975432 2333444444444443320 1 11222 222222
Q ss_pred ccccceeEeeec------------------CCCC-eee-eecCCCcc---ccccccCC--------ccccccChhHHHHH
Q 005134 112 VDLWRKFIYCTS------------------VTGP-ILG-SVDHMQPQ---DFEKVVSP--------VSVAHFSQYKLNKL 160 (712)
Q Consensus 112 ~~~~~~~~~~~~------------------~~G~-~l~-~~~~~~~~---~~~~~~~p--------~~~~~i~q~~Le~~ 160 (712)
......+.+-.. +.|. ... ........ ...+...+ +.-..+.-.+|.-.
T Consensus 90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~ 169 (532)
T COG0578 90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA 169 (532)
T ss_pred ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence 111111111111 1110 000 00000000 00000001 11223444566666
Q ss_pred HHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch-h
Q 005134 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-V 239 (712)
Q Consensus 161 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~-V 239 (712)
+...+.+.|. .++..++|+++..+++-+-|.+.+..+| +++.|+|+.||-|-|.++- +
T Consensus 170 ~a~~A~~~Ga-------------------~il~~~~v~~~~re~~v~gV~~~D~~tg--~~~~ira~~VVNAaGpW~d~i 228 (532)
T COG0578 170 NARDAAEHGA-------------------EILTYTRVESLRREGGVWGVEVEDRETG--ETYEIRARAVVNAAGPWVDEI 228 (532)
T ss_pred HHHHHHhccc-------------------chhhcceeeeeeecCCEEEEEEEecCCC--cEEEEEcCEEEECCCccHHHH
Confidence 6677777787 8899999999999888444666665555 4689999999999999985 5
Q ss_pred hcccCCC
Q 005134 240 RKLVGID 246 (712)
Q Consensus 240 R~~lgi~ 246 (712)
++..+..
T Consensus 229 ~~~~~~~ 235 (532)
T COG0578 229 LEMAGLE 235 (532)
T ss_pred HHhhccc
Confidence 6666433
No 91
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.80 E-value=9e-08 Score=109.77 Aligned_cols=74 Identities=12% Similarity=0.217 Sum_probs=54.4
Q ss_pred ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEE
Q 005134 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL 229 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~V 229 (712)
.++-..|...|...+.+.|+ +++++++|+++..+++.++ +++.+..+++ ..+|+|++|
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~--~~~i~A~~V 203 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGA-------------------QILTYHEVTGLIREGDTVCGVRVRDHLTGE--TQEIHAPVV 203 (546)
T ss_pred EECHHHHHHHHHHHHHhCCC-------------------EEEeccEEEEEEEcCCeEEEEEEEEcCCCc--EEEEECCEE
Confidence 45566777777788888887 9999999999988777654 4554333332 357999999
Q ss_pred EeccCCCch-hhcccCC
Q 005134 230 IGTDGAGST-VRKLVGI 245 (712)
Q Consensus 230 VgADG~~S~-VR~~lgi 245 (712)
|-|-|++|. +.+..++
T Consensus 204 VnAaG~wa~~l~~~~g~ 220 (546)
T PRK11101 204 VNAAGIWGQHIAEYADL 220 (546)
T ss_pred EECCChhHHHHHHhcCC
Confidence 999999974 5555554
No 92
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.79 E-value=6e-07 Score=104.34 Aligned_cols=73 Identities=21% Similarity=0.193 Sum_probs=54.1
Q ss_pred ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcC--CeEE-EEEEeccCCceeeEEEEec
Q 005134 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD--QCIN-VIASFLKEGKCTERNIQCN 227 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~--~~v~-v~v~~~~~g~~~~~~i~ad 227 (712)
.++-..|...|.+.+.+.|+ +++.+++|+++..++ +.+. |++.+..+++ +++|+++
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga-------------------~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~--~~~i~a~ 286 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGA-------------------AVLNYAEVVSLIKDESTGRIVGARVRDNLTGK--EFDVYAK 286 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCc-------------------EEEeccEEEEEEEecCCCcEEEEEEEECCCCc--EEEEEeC
Confidence 45566788888888888887 999999999998763 4443 4454333342 3579999
Q ss_pred EEEeccCCCch-hhcccC
Q 005134 228 ILIGTDGAGST-VRKLVG 244 (712)
Q Consensus 228 ~VVgADG~~S~-VR~~lg 244 (712)
+||.|.|++|. +++.++
T Consensus 287 ~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 287 VVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EEEECCCHhHHHHHHhcc
Confidence 99999999975 677665
No 93
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.77 E-value=5.8e-08 Score=114.22 Aligned_cols=35 Identities=26% Similarity=0.482 Sum_probs=32.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
++||+|||||++|+++|+.|+++|++|+||||...
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 47999999999999999999999999999999853
No 94
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.76 E-value=3.4e-07 Score=104.18 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=35.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..++||||||||.+||++|+.++++|.+|+||||.+..
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~ 96 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA 96 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 35789999999999999999999999999999998764
No 95
>PLN02612 phytoene desaturase
Probab=98.74 E-value=7.5e-06 Score=94.36 Aligned_cols=65 Identities=25% Similarity=0.344 Sum_probs=49.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-------------cee---ecCHhHHHHHHhhhcHHHH
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-------------QAH---FINNRYALVFRKLDGLAEE 104 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~-------------ra~---~i~~rtmeilr~l~Gl~d~ 104 (712)
....+|+|||||++||++|+.|+++|++|+|+|++......- ..+ ...++.+++|+++ |+.+.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~el-G~~~~ 169 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGEL-GINDR 169 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHh-CCccc
Confidence 445899999999999999999999999999999986431110 011 1346789999999 98765
Q ss_pred HH
Q 005134 105 IE 106 (712)
Q Consensus 105 l~ 106 (712)
+.
T Consensus 170 ~~ 171 (567)
T PLN02612 170 LQ 171 (567)
T ss_pred ce
Confidence 43
No 96
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.71 E-value=1.1e-07 Score=100.35 Aligned_cols=112 Identities=25% Similarity=0.379 Sum_probs=75.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
+||+||||||+||++|..|++.|++|+|||+... .+..... . .
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-----gg~~~~~----------~---~------------------- 43 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-----GGQLTTT----------T---E------------------- 43 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-----Ccceeec----------c---c-------------------
Confidence 5899999999999999999999999999998761 1100000 0 0
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
+..+ |.....+....+...+.+.+++.++ ++++ +++++++.+
T Consensus 44 -----~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~gv-------------------~~~~-~~v~~v~~~ 85 (300)
T TIGR01292 44 -----VENY-------------PGFPEGISGPELMEKMKEQAVKFGA-------------------EIIY-EEVIKVDLS 85 (300)
T ss_pred -----cccc-------------CCCCCCCChHHHHHHHHHHHHHcCC-------------------eEEE-EEEEEEEec
Confidence 0000 0000012233555667777777776 7888 899999988
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
++.++++.. ++. ++++|+||.|.|...
T Consensus 86 ~~~~~v~~~---~~~----~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 86 DRPFKVKTG---DGK----EYTAKAVIIATGASA 112 (300)
T ss_pred CCeeEEEeC---CCC----EEEeCEEEECCCCCc
Confidence 777666543 332 689999999999854
No 97
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.71 E-value=4.8e-08 Score=107.74 Aligned_cols=149 Identities=25% Similarity=0.329 Sum_probs=83.7
Q ss_pred EEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCceeecCHhHH-HHHHhhhc----HHHHHHhcCCCcccc
Q 005134 47 LIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNRYA-LVFRKLDG----LAEEIERSQPPVDLW 115 (712)
Q Consensus 47 lIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~------~~ra~~i~~rtm-eilr~l~G----l~d~l~~~~~~~~~~ 115 (712)
+|||||++||++|+.|+++|.+|+|+||.+.+.. .++....+.... +++...+. +...+..... .+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~-~d~- 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSN-KDL- 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCH-HHH-
Confidence 6999999999999999999999999999886522 122222232211 11121100 1111111000 000
Q ss_pred ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc
Q 005134 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (712)
Q Consensus 116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~ 195 (712)
..++. ..|-.+.... . .. .-| ..-....+...|.+.+++.|+ ++++++
T Consensus 79 --~~~~~-~~Gv~~~~~~-----~-g~-~~p---~~~~a~~v~~~L~~~l~~~gv-------------------~i~~~~ 126 (400)
T TIGR00275 79 --IDFFE-SLGLELKVEE-----D-GR-VFP---CSDSAADVLDALLNELKELGV-------------------EILTNS 126 (400)
T ss_pred --HHHHH-HcCCeeEEec-----C-CE-eEC---CCCCHHHHHHHHHHHHHHCCC-------------------EEEeCC
Confidence 00000 0111111000 0 00 001 111235677788888888776 999999
Q ss_pred EEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 196 ~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
++++++.+++.+.++. ++ .++.+|.||.|.|..|
T Consensus 127 ~V~~i~~~~~~~~v~~----~~----~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 127 KVKSIKKDDNGFGVET----SG----GEYEADKVILATGGLS 160 (400)
T ss_pred EEEEEEecCCeEEEEE----CC----cEEEcCEEEECCCCcc
Confidence 9999988777655443 23 2589999999999988
No 98
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.70 E-value=3.2e-06 Score=94.96 Aligned_cols=59 Identities=25% Similarity=0.369 Sum_probs=44.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCC------------Cceee---cCHhHHHHHHhhhcHHHH
Q 005134 45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTH------------PQAHF---INNRYALVFRKLDGLAEE 104 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~~~~------------~ra~~---i~~rtmeilr~l~Gl~d~ 104 (712)
+|+|||||++||++|..|+++| ++|+|+|+++.+--+ -.++. -.+..+++++++ |+.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-gl~~~ 77 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKEL-GLEDE 77 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHc-CCccc
Confidence 6999999999999999999988 899999998754211 01111 134577888888 87654
No 99
>PLN02661 Putative thiazole synthesis
Probab=98.70 E-value=3.3e-07 Score=97.14 Aligned_cols=38 Identities=34% Similarity=0.453 Sum_probs=34.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~ 78 (712)
..++||+|||||++||++|+.|+++ |++|+||||...+
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 4468999999999999999999986 8999999998755
No 100
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.69 E-value=9.4e-08 Score=107.89 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=34.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+.++||||||||++||++|+.|+++|.+|+||||.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3568999999999999999999999999999999864
No 101
>PRK07121 hypothetical protein; Validated
Probab=98.65 E-value=2.1e-07 Score=105.71 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=35.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..++||||||+|.+||++|+.++++|.+|+||||.+..
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 45799999999999999999999999999999998754
No 102
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.63 E-value=1.3e-06 Score=100.19 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=35.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+.++||||||+|.+||++|+.+++.|.+|+||||....
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 45799999999999999999999999999999998754
No 103
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.62 E-value=2.6e-07 Score=105.47 Aligned_cols=114 Identities=19% Similarity=0.340 Sum_probs=79.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~ 120 (712)
...+||+||||||+||++|+.|+++|++++|||+... +... ... ++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~G------G~~~--------~~~-~~~------------------ 255 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFG------GQVL--------DTM-GIE------------------ 255 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC------Ceee--------ccC-ccc------------------
Confidence 4468999999999999999999999999999975311 1000 000 000
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
+..+ + ....-.++...|.+.++++|+ +++++++++++
T Consensus 256 --~~~~-----~-----------------~~~~~~~l~~~l~~~~~~~gv-------------------~i~~~~~V~~I 292 (517)
T PRK15317 256 --NFIS-----V-----------------PETEGPKLAAALEEHVKEYDV-------------------DIMNLQRASKL 292 (517)
T ss_pred --ccCC-----C-----------------CCCCHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEE
Confidence 0000 0 011234567778888888876 89999999999
Q ss_pred EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
...++..++++. +|. +++++.||.|+|+++
T Consensus 293 ~~~~~~~~V~~~---~g~----~i~a~~vViAtG~~~ 322 (517)
T PRK15317 293 EPAAGLIEVELA---NGA----VLKAKTVILATGARW 322 (517)
T ss_pred EecCCeEEEEEC---CCC----EEEcCEEEECCCCCc
Confidence 987777666553 442 589999999999976
No 104
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.62 E-value=8.5e-06 Score=91.89 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=46.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCCC-------CC-----ceeec---CHhHHHHHHhhhcHHHH
Q 005134 44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFST-------HP-----QAHFI---NNRYALVFRKLDGLAEE 104 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~~~-------~~-----ra~~i---~~rtmeilr~l~Gl~d~ 104 (712)
.||+|||||++||++|..|+++ |++|+|+|+++.+-- .+ .++.+ .+..+++++++ |+.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~l-gl~~~ 81 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDL-GLEHV 81 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHc-CCCcc
Confidence 6899999999999999999999 999999999875411 11 11222 34588889988 88654
Q ss_pred H
Q 005134 105 I 105 (712)
Q Consensus 105 l 105 (712)
+
T Consensus 82 ~ 82 (462)
T TIGR00562 82 L 82 (462)
T ss_pred c
Confidence 4
No 105
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.60 E-value=1.3e-06 Score=101.02 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEEecc
Q 005134 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD 233 (712)
Q Consensus 155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgAD 233 (712)
..+...|.+.+.+.|+ ++++++.++++..+++.|. +.+....+|+ ...+.|+.||.|+
T Consensus 129 ~~i~~~L~~~~~~~gv-------------------~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~--~~~i~Ak~VVlAt 187 (566)
T TIGR01812 129 HALLHTLYEQCLKLGV-------------------SFFNEYFALDLIHDDGRVRGVVAYDLKTGE--IVFFRAKAVVLAT 187 (566)
T ss_pred HHHHHHHHHHHHHcCC-------------------EEEeccEEEEEEEeCCEEEEEEEEECCCCc--EEEEECCeEEECC
Confidence 3566778888877776 9999999999987766543 2222222442 3579999999999
Q ss_pred CCCchhhc
Q 005134 234 GAGSTVRK 241 (712)
Q Consensus 234 G~~S~VR~ 241 (712)
|..|.+..
T Consensus 188 GG~~~~~~ 195 (566)
T TIGR01812 188 GGYGRIYK 195 (566)
T ss_pred CcccCCCC
Confidence 99997654
No 106
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.60 E-value=2.8e-07 Score=102.67 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=36.2
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF 78 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~~~ 78 (712)
.+.++||+|||||++||++|..|.++|++ ++|+||+...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV 44 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc
Confidence 35679999999999999999999999999 9999999865
No 107
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.59 E-value=1.2e-06 Score=99.34 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHh-cCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEEec
Q 005134 155 YKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGT 232 (712)
Q Consensus 155 ~~Le~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgA 232 (712)
..+...|.+.+.+ .++ +++++++++++..+++.|. +.+.. .+. ...++++.||.|
T Consensus 128 ~~l~~~L~~~~~~~~gi-------------------~i~~~~~v~~l~~~~g~v~Gv~~~~--~~~--~~~i~A~~VVlA 184 (488)
T TIGR00551 128 REVITTLVKKALNHPNI-------------------RIIEGENALDLLIETGRVVGVWVWN--RET--VETCHADAVVLA 184 (488)
T ss_pred HHHHHHHHHHHHhcCCc-------------------EEEECeEeeeeeccCCEEEEEEEEE--CCc--EEEEEcCEEEEC
Confidence 4677888888876 455 9999999999987766554 43432 222 357899999999
Q ss_pred cCCCchhhc
Q 005134 233 DGAGSTVRK 241 (712)
Q Consensus 233 DG~~S~VR~ 241 (712)
+|..|.+..
T Consensus 185 tGG~~~~~~ 193 (488)
T TIGR00551 185 TGGAGKLYQ 193 (488)
T ss_pred CCcccCCCC
Confidence 999998654
No 108
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.58 E-value=2.9e-07 Score=103.16 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCC-eEE-EEEEeccCCceeeEEEEecEEEec
Q 005134 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CIN-VIASFLKEGKCTERNIQCNILIGT 232 (712)
Q Consensus 155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~-~v~-v~v~~~~~g~~~~~~i~ad~VVgA 232 (712)
..+...|.+.+.+.|+ +++++++++++..+++ .|+ +.+.. .++ ....+.++.||.|
T Consensus 130 ~~l~~~l~~~~~~~gv-------------------~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g--~~~~~~a~~VVlA 187 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGI-------------------DTRLNSKVEDLIQDDQGTVVGVVVKG-KGK--GIYIKAAKAVVLA 187 (439)
T ss_pred HHHHHHHHHHHHHcCC-------------------EEEeCCEeeEeEECCCCcEEEEEEEe-CCC--eEEEEecceEEEe
Confidence 4677888888888887 9999999999998654 332 33432 233 2356899999999
Q ss_pred cCCCch
Q 005134 233 DGAGST 238 (712)
Q Consensus 233 DG~~S~ 238 (712)
.|..+.
T Consensus 188 tGg~~~ 193 (439)
T TIGR01813 188 TGGFGS 193 (439)
T ss_pred cCCCCC
Confidence 998886
No 109
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.58 E-value=8.1e-07 Score=103.08 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=34.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~ 78 (712)
+.++||||||||++||++|+.+++. |.+|+||||....
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 3568999999999999999999998 9999999998753
No 110
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.58 E-value=7.6e-07 Score=100.28 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=33.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~ 76 (712)
..++||+|||||++||++|+.|+++ |.+|+|+|+..
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 4458999999999999999999998 99999999975
No 111
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.58 E-value=3.1e-07 Score=104.25 Aligned_cols=144 Identities=22% Similarity=0.282 Sum_probs=83.9
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCC-ccccceeEeee
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP-VDLWRKFIYCT 122 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~-~~~~~~~~~~~ 122 (712)
-+|+|||||++||++|..|...|++++++||++.. +|++.--...... ...+.....
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i--------------------GG~W~~~~~~~~g~~~~y~sl~~-- 59 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI--------------------GGLWRYTENPEDGRSSVYDSLHT-- 59 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS--------------------SGGGCHSTTCCCSEGGGSTT-B---
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC--------------------CccCeeCCcCCCCccccccceEE--
Confidence 47999999999999999999999999999999875 1332100000000 000000000
Q ss_pred cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (712)
Q Consensus 123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~ 202 (712)
+ .-+.+..+ .++. ..+......++.++.+.|.+.++.++.. ..|+|+++|++++.
T Consensus 60 n-~sk~~~~f-----sdfp--~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~-----------------~~I~fnt~V~~v~~ 114 (531)
T PF00743_consen 60 N-TSKEMMAF-----SDFP--FPEDYPDFPSHSEVLEYLESYAEHFGLR-----------------KHIRFNTEVVSVER 114 (531)
T ss_dssp S-S-GGGSCC-----TTS---HCCCCSSSEBHHHHHHHHHHHHHHTTGG-----------------GGEETSEEEEEEEE
T ss_pred e-eCchHhcC-----CCcC--CCCCCCCCCCHHHHHHHHHHHHhhhCCc-----------------ceEEEccEEeEeee
Confidence 0 00111111 1111 0111123457889999999999988761 27999999999998
Q ss_pred cCC-----eEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134 203 TDQ-----CINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (712)
Q Consensus 203 ~~~-----~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (712)
.++ ..+|+. ..+|+ .++-.+|.||.|-|.++.
T Consensus 115 ~~d~~~~~~W~V~~--~~~g~--~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 115 DPDFSATGKWEVTT--ENDGK--EETEEFDAVVVATGHFSK 151 (531)
T ss_dssp ETTTT-ETEEEEEE--TTTTE--EEEEEECEEEEEE-SSSC
T ss_pred ccccCCCceEEEEe--ecCCe--EEEEEeCeEEEcCCCcCC
Confidence 654 345543 34453 345678999999999874
No 112
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.57 E-value=1.4e-06 Score=101.29 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=34.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..++||||||+|.+||++|+.+++.|.+|+||||....
T Consensus 48 ~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~ 85 (635)
T PLN00128 48 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 85 (635)
T ss_pred eeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 35689999999999999999999999999999998643
No 113
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.56 E-value=2.1e-06 Score=99.22 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=33.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~ 78 (712)
+.++||||||||.+||++|+.+++. |.+|+|+||....
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~ 41 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 4568999999999999999999987 5899999998643
No 114
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.56 E-value=3.5e-05 Score=86.75 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=46.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--------C----ce-e---ecCHhHHHHHHhhhcHHHHH
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--------P----QA-H---FINNRYALVFRKLDGLAEEI 105 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~--------~----ra-~---~i~~rtmeilr~l~Gl~d~l 105 (712)
+|+|||||++||++|+.|+++|++|+|+|+++.+.-+ + .+ + ...++.+++|+++ |+.+.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-g~~~~~ 76 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKEL-NIEDRL 76 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHc-CCccce
Confidence 5899999999999999999999999999998753211 0 01 1 2247889999999 886544
No 115
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.55 E-value=4.6e-06 Score=85.75 Aligned_cols=48 Identities=33% Similarity=0.316 Sum_probs=41.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFIN 88 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~ 88 (712)
....+|+|||||+=||++|+.|+|+|.+++++|+.+-+...+..+..|
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~s 52 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGIS 52 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcc
Confidence 345899999999999999999999999999999999886665555444
No 116
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.54 E-value=5.5e-07 Score=102.74 Aligned_cols=114 Identities=18% Similarity=0.329 Sum_probs=78.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~ 120 (712)
...+||+||||||+||++|+.|++.|++|+|||.+.. +.. .... ++. .+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~G------G~~--------~~~~-~~~--------------~~-- 258 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIG------GQV--------KDTV-GIE--------------NL-- 258 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC------Ccc--------ccCc-Ccc--------------cc--
Confidence 4469999999999999999999999999999974311 100 0000 100 00
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
.+ .+ .....++...|.+.+++.++ +++.+++++++
T Consensus 259 ----~~------------------~~----~~~~~~l~~~l~~~l~~~gv-------------------~i~~~~~V~~I 293 (515)
T TIGR03140 259 ----IS------------------VP----YTTGSQLAANLEEHIKQYPI-------------------DLMENQRAKKI 293 (515)
T ss_pred ----cc------------------cC----CCCHHHHHHHHHHHHHHhCC-------------------eEEcCCEEEEE
Confidence 00 00 11234566777777777776 89999999999
Q ss_pred EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
+.+++.+.+++. +|. ++++|+||.|.|++.
T Consensus 294 ~~~~~~~~v~~~---~g~----~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 294 ETEDGLIVVTLE---SGE----VLKAKSVIVATGARW 323 (515)
T ss_pred EecCCeEEEEEC---CCC----EEEeCEEEECCCCCc
Confidence 887776666553 442 689999999999863
No 117
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=4.5e-07 Score=99.90 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=91.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~ 120 (712)
+...+|+||||||+||++|..|.++|++++++||..... +........+.-.. -+.+.++-.- +.+.+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG----GlW~y~~~~~~~~s--s~Y~~l~tn~-pKe~~----- 71 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG----GLWKYTENVEVVHS--SVYKSLRTNL-PKEMM----- 71 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc----ceEeecCccccccc--chhhhhhccC-Chhhh-----
Confidence 456899999999999999999999999999999998752 11111100000000 0111111111 11000
Q ss_pred eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (712)
Q Consensus 121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v 200 (712)
..-+.+.+.++ +....+...+...|.+.|++++. ...|+|+++++.+
T Consensus 72 ---------~~~dfpf~~~~-------~~~~p~~~e~~~YL~~yA~~F~l-----------------~~~i~f~~~v~~v 118 (448)
T KOG1399|consen 72 ---------GYSDFPFPERD-------PRYFPSHREVLEYLRDYAKHFDL-----------------LKMINFNTEVVRV 118 (448)
T ss_pred ---------cCCCCCCcccC-------cccCCCHHHHHHHHHHHHHhcCh-----------------hhheEecccEEEE
Confidence 00011111110 11223456888999999998875 2379999999999
Q ss_pred EEcC-CeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 201 SATD-QCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 201 ~~~~-~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
+... +...|.... +++. ...-.+|.||.|.|-+.
T Consensus 119 ~~~~~gkW~V~~~~--~~~~-~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 119 DSIDKGKWRVTTKD--NGTQ-IEEEIFDAVVVCTGHYV 153 (448)
T ss_pred eeccCCceeEEEec--CCcc-eeEEEeeEEEEcccCcC
Confidence 9888 577777763 2221 24567999999999883
No 118
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=2.9e-06 Score=97.78 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=35.2
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
...++||||||+|.+||++|+.+++.|.+|+||||.+..
T Consensus 2 ~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~ 40 (566)
T PRK06452 2 EKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPT 40 (566)
T ss_pred CcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 346799999999999999999999999999999998643
No 119
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.53 E-value=1.3e-06 Score=100.57 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=36.9
Q ss_pred CCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 38 ~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
.|.+.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 2 ~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 2 AMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 34566899999999999999999999999999999998754
No 120
>PLN02268 probable polyamine oxidase
Probab=98.52 E-value=3.6e-05 Score=86.13 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=32.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
.+|+|||||++||++|..|.+.|++|+|+|+++..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~ 35 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRI 35 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 37999999999999999999999999999998754
No 121
>PLN02576 protoporphyrinogen oxidase
Probab=98.51 E-value=5e-05 Score=86.52 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=34.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~ 78 (712)
..+++|+|||||++||++|+.|+++ |++|+|+|+++.+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rv 48 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRV 48 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 3457999999999999999999999 9999999999754
No 122
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.49 E-value=4.6e-06 Score=93.04 Aligned_cols=36 Identities=33% Similarity=0.404 Sum_probs=32.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
.++||||||+|.+||++|+.++ .|.+|+||||.+..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN 38 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence 4689999999999999999985 79999999998754
No 123
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.49 E-value=3.1e-07 Score=102.12 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=46.9
Q ss_pred ChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEE-EeccCCceeeEEEEecEEEe
Q 005134 153 SQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIA-SFLKEGKCTERNIQCNILIG 231 (712)
Q Consensus 153 ~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v-~~~~~g~~~~~~i~ad~VVg 231 (712)
.-..+...|.+.+++.|+ +|+++++++++..+++.|+-.+ .+..+| ...+|+|+-||-
T Consensus 139 ~g~~~~~~l~~~~~~~gv-------------------~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g--~~~~i~A~aVIl 197 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGV-------------------DIRFNTRVTDLITEDGRVTGVVAENPADG--EFVRIKAKAVIL 197 (417)
T ss_dssp HHHHHHHHHHHHHHHTTE-------------------EEEESEEEEEEEEETTEEEEEEEEETTTC--EEEEEEESEEEE
T ss_pred cHHHHHHHHHHHHhhcCe-------------------eeeccceeeeEEEeCCceeEEEEEECCCC--eEEEEeeeEEEe
Confidence 345678889999999887 9999999999999877665333 322344 357899999999
Q ss_pred ccCCCch
Q 005134 232 TDGAGST 238 (712)
Q Consensus 232 ADG~~S~ 238 (712)
|.|..+.
T Consensus 198 AtGG~~~ 204 (417)
T PF00890_consen 198 ATGGFGG 204 (417)
T ss_dssp ----BGG
T ss_pred ccCcccc
Confidence 9999985
No 124
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.49 E-value=2.9e-06 Score=92.63 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=32.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+||+|||||++|+++|+.|+++|.+|+|+||...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999863
No 125
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=3.2e-06 Score=97.77 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=32.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKA 77 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~ 77 (712)
.++||||||||++||++|+.+++.| .+|+||||...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 5689999999999999999999874 89999999864
No 126
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=4.3e-06 Score=96.80 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=35.9
Q ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCC
Q 005134 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAF 78 (712)
Q Consensus 39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~G---i~v~lvEr~~~~ 78 (712)
|+..++||||||||++||++|+.+++.| .+|+|+||....
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~ 43 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPM 43 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCC
Confidence 4456799999999999999999999998 899999998754
No 127
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=4e-06 Score=97.77 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=34.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..++||||||||.+||++|+.+++.|.+|+||||...+
T Consensus 33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 35689999999999999999999999999999986543
No 128
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=6.3e-06 Score=95.60 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=34.6
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
...++||||||||++||++|+.+++.|.+|+||||...
T Consensus 9 ~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~ 46 (598)
T PRK09078 9 IDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP 46 (598)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 34568999999999999999999999999999999864
No 129
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.45 E-value=6.3e-06 Score=95.08 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=33.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~ 78 (712)
.++||||||||++||++|+.+++. |.+|+|+||....
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~ 40 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPM 40 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 358999999999999999999987 6899999998654
No 130
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.45 E-value=5.8e-06 Score=96.11 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=34.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..++||||||||.+||++|+.+++.|.+|+|+||....
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~ 64 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT 64 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence 35689999999999999999999999999999998653
No 131
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.6e-06 Score=91.41 Aligned_cols=35 Identities=34% Similarity=0.693 Sum_probs=30.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~ 76 (712)
+.+||+||||||+||++|+.++|+|++ ++|+|+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 469999999999999999999999999 66677653
No 132
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.44 E-value=8.4e-07 Score=96.41 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=75.8
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--------CceeecCHhHHHHHHhhhcHHH-HHHhcCCCccc
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--------PQAHFINNRYALVFRKLDGLAE-EIERSQPPVDL 114 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~--------~ra~~i~~rtmeilr~l~Gl~d-~l~~~~~~~~~ 114 (712)
.||+|||||++|+.+|+.|+++|++|+|||+++..... .+....+.++..++... |++. ++...+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~-Gll~~em~~lgsl~-- 79 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAV-GLLKEEMRRLGSLI-- 79 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcC-CchHHHHHHhcchh--
Confidence 59999999999999999999999999999988765321 12334556667777777 7664 454433211
Q ss_pred cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (712)
Q Consensus 115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g 194 (712)
+. ..... . ..+.....++|..+.+.|.+.+.+.+. ++++ .
T Consensus 80 -----~~---aad~~---------~----vPA~gaLvvdR~~~~~~L~~~L~~~pn------------------I~l~-~ 119 (436)
T PRK05335 80 -----ME---AADAH---------R----VPAGGALAVDREGFSEYVTEALENHPL------------------ITVI-R 119 (436)
T ss_pred -----ee---ccccc---------C----CCCccceecCHHHHHHHHHHHHHcCCC------------------cEEE-c
Confidence 00 00000 0 111123467888899999999987643 4666 4
Q ss_pred cEEEEEE
Q 005134 195 HECVSVS 201 (712)
Q Consensus 195 ~~v~~v~ 201 (712)
.+|+++.
T Consensus 120 ~eV~~l~ 126 (436)
T PRK05335 120 EEVTEIP 126 (436)
T ss_pred cchhccc
Confidence 5777775
No 133
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.44 E-value=2.8e-06 Score=91.59 Aligned_cols=146 Identities=16% Similarity=0.256 Sum_probs=82.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEE-cCCCCCCCCCceee---cCHh-HHHHHHhhhcHHHHHHh-cCCCcccccee
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVL-EKNKAFSTHPQAHF---INNR-YALVFRKLDGLAEEIER-SQPPVDLWRKF 118 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lv-Er~~~~~~~~ra~~---i~~r-tmeilr~l~Gl~d~l~~-~~~~~~~~~~~ 118 (712)
||+|||||.||+.+|+.+++.|.+|+|| ++.......++... +... -.+.++.++|+.-.+.. .+. ++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i------~~ 74 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGI------HF 74 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEE------EE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhh------hh
Confidence 7999999999999999999999999999 44444433333222 2111 11233333222211111 110 11
Q ss_pred EeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (712)
Q Consensus 119 ~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~ 198 (712)
.....-.|... -.....+++..+.+.+.+.+.+.+. ++|. ..+|+
T Consensus 75 ~~lN~skGpav----------------~a~r~qvDr~~y~~~~~~~l~~~~n------------------l~i~-~~~V~ 119 (392)
T PF01134_consen 75 RMLNRSKGPAV----------------HALRAQVDRDKYSRAMREKLESHPN------------------LTII-QGEVT 119 (392)
T ss_dssp EEESTTS-GGC----------------TEEEEEE-HHHHHHHHHHHHHTSTT------------------EEEE-ES-EE
T ss_pred hcccccCCCCc----------------cchHhhccHHHHHHHHHHHHhcCCC------------------eEEE-Ecccc
Confidence 11100011100 0012468899999999999988654 4664 57899
Q ss_pred EEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 199 ~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
++..+++.|.-... .+| ..+.+|.||.|+|...
T Consensus 120 ~l~~e~~~v~GV~~--~~g----~~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 120 DLIVENGKVKGVVT--KDG----EEIEADAVVLATGTFL 152 (392)
T ss_dssp EEEECTTEEEEEEE--TTS----EEEEECEEEE-TTTGB
T ss_pred eEEecCCeEEEEEe--CCC----CEEecCEEEEeccccc
Confidence 99988887655433 245 3799999999999843
No 134
>PRK08275 putative oxidoreductase; Provisional
Probab=98.42 E-value=1.3e-06 Score=100.56 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=33.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA 77 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~ 77 (712)
..++||||||||.+||++|+.+++. |.+|+||||.+.
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4668999999999999999999987 789999999875
No 135
>PLN02676 polyamine oxidase
Probab=98.42 E-value=1.8e-05 Score=89.44 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=33.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~~ 78 (712)
..+||+|||||++||++|..|+++|+ +|+|+|++...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 35799999999999999999999998 69999998753
No 136
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.42 E-value=6.1e-06 Score=93.09 Aligned_cols=39 Identities=23% Similarity=0.449 Sum_probs=35.2
Q ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
|.+.++||+||||||+|+++|+.|+++|.+|+||||...
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~ 39 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN 39 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 345679999999999999999999999999999999743
No 137
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=1.1e-05 Score=93.31 Aligned_cols=37 Identities=35% Similarity=0.496 Sum_probs=34.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+.++||||||||.+||++|+.+++.|.+|+||||...
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 4568999999999999999999999999999999753
No 138
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.39 E-value=5.5e-05 Score=77.75 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=34.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFST 80 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~~~ 80 (712)
..+.||+|||||.+|+++|..|+++ |++|+|+||....+.
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq 127 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ 127 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence 3468999999999999999999755 799999999986543
No 139
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=1e-05 Score=92.93 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=32.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
..++||||||||.+||++|+.+ +.|.+|+|+||.+.
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 4568999999999999999999 99999999999753
No 140
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.36 E-value=3.1e-06 Score=97.42 Aligned_cols=34 Identities=26% Similarity=0.602 Sum_probs=32.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.+||+||||||+||++|+.|+++|++|+|||+..
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 4899999999999999999999999999999853
No 141
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.36 E-value=4.7e-05 Score=83.59 Aligned_cols=38 Identities=34% Similarity=0.484 Sum_probs=34.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
++++||+|||||++|+++|+.|+++|.+|+|+|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 45699999999999999999999999999999998753
No 142
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.36 E-value=1.1e-05 Score=94.17 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=36.3
Q ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
|...++||||||||.+||++|+.+++.|.+|+||||.+..
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4467799999999999999999999999999999998754
No 143
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.35 E-value=1.4e-05 Score=92.60 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=33.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
.++||||||+|++||++|+.+++.|.+|+||||.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4579999999999999999999999999999988653
No 144
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.33 E-value=1.2e-05 Score=90.73 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=32.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+||||||||++||++|+.+++.|.+|+|+||.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 7999999999999999999999999999999864
No 145
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=2e-05 Score=91.84 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=34.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..++||||||||.+||++|+.+++.|.+|+||||.+..
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 45689999999999999999999999999999998643
No 146
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=2.3e-05 Score=90.79 Aligned_cols=35 Identities=31% Similarity=0.322 Sum_probs=32.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.++||||||||++||++|+.+++. .+|+|+||...
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence 568999999999999999999986 99999999864
No 147
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.31 E-value=2.9e-06 Score=96.74 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=33.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
.++||||||+| +||++|+.+++.|.+|+||||.+..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~ 41 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF 41 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 47899999999 9999999999999999999998753
No 148
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.30 E-value=1.1e-05 Score=91.67 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=82.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-C---CCceeecCHh-HHHHHHhhhcHHHHHHh-cCCCccccce
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-T---HPQAHFINNR-YALVFRKLDGLAEEIER-SQPPVDLWRK 117 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~-~---~~ra~~i~~r-tmeilr~l~Gl~d~l~~-~~~~~~~~~~ 117 (712)
+||+|||||++|+.+|..|++.|.+|+|+|++.... . .+...++... -.+-++.++|+...+.. .+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~------ 74 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQ------ 74 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhcee------
Confidence 589999999999999999999999999999975321 1 1111111111 11223333222222111 1110
Q ss_pred eEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEE
Q 005134 118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (712)
Q Consensus 118 ~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v 197 (712)
+.......|... ..+ ...+++..+...|.+.+.+.+. ++++. .++
T Consensus 75 ~r~ln~skgpAV--------------~~~--RaQVDr~~y~~~L~e~Le~~pg------------------V~Ile-~~V 119 (617)
T TIGR00136 75 FRVLNSSKGPAV--------------RAT--RAQIDKVLYRKAMRNALENQPN------------------LSLFQ-GEV 119 (617)
T ss_pred heecccCCCCcc--------------ccc--HHhCCHHHHHHHHHHHHHcCCC------------------cEEEE-eEE
Confidence 000000000000 011 1467788888888888887743 36654 467
Q ss_pred EEEEEc-CCeEE-EEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 198 VSVSAT-DQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 198 ~~v~~~-~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
+.+..+ ++.+. |.+ .+|. .++|+.||.|.|..+
T Consensus 120 v~li~e~~g~V~GV~t---~~G~----~I~Ad~VILATGtfL 154 (617)
T TIGR00136 120 EDLILEDNDEIKGVVT---QDGL----KFRAKAVIITTGTFL 154 (617)
T ss_pred EEEEEecCCcEEEEEE---CCCC----EEECCEEEEccCccc
Confidence 777554 44432 332 2442 689999999999996
No 149
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.29 E-value=1e-05 Score=67.67 Aligned_cols=34 Identities=26% Similarity=0.617 Sum_probs=31.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+|+|||||++|+-+|..|++.|.+|+|+++.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4899999999999999999999999999999864
No 150
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.29 E-value=2.7e-05 Score=90.10 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=34.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..++||||||+|.+||++|+.+++.|.+|+|+||....
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~ 42 (588)
T PRK08958 5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT 42 (588)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 34689999999999999999999999999999998543
No 151
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.28 E-value=2.7e-05 Score=89.35 Aligned_cols=37 Identities=35% Similarity=0.514 Sum_probs=33.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+.++||||||+|++||++|+.+++. .+|+||||....
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 4568999999999999999999987 899999998753
No 152
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.27 E-value=7e-06 Score=95.02 Aligned_cols=38 Identities=32% Similarity=0.562 Sum_probs=34.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45799999999999999999999999999999998643
No 153
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.27 E-value=4.5e-06 Score=83.40 Aligned_cols=34 Identities=35% Similarity=0.570 Sum_probs=32.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+|+|||+||+||++|..|+..|++|+||||....
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCc
Confidence 6999999999999999999999999999998764
No 154
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.27 E-value=1.8e-05 Score=90.15 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=32.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
++||||||+|.+||++|+.+++ |.+|+||||.+..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~ 37 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKR 37 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCC
Confidence 6899999999999999999986 9999999998754
No 155
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.27 E-value=0.00013 Score=85.83 Aligned_cols=38 Identities=37% Similarity=0.451 Sum_probs=34.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
....+|+|||||++||++|+.|++.|++|+|+|++..+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 34589999999999999999999999999999998754
No 156
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.26 E-value=5.4e-06 Score=95.88 Aligned_cols=38 Identities=42% Similarity=0.659 Sum_probs=35.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..++||||||+|++||++|+.++++|.+|+||||....
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~ 44 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 45799999999999999999999999999999998754
No 157
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.25 E-value=2.2e-06 Score=84.92 Aligned_cols=33 Identities=36% Similarity=0.686 Sum_probs=30.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
||+||||||+|+++|..|++.|++++|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 699999999999999999999999999987653
No 158
>PRK09897 hypothetical protein; Provisional
Probab=98.24 E-value=5.8e-06 Score=93.66 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=30.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~ 78 (712)
.+|+||||||+|+++|..|.+++ ++|+|||++..+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 47999999999999999998874 589999997654
No 159
>PLN02815 L-aspartate oxidase
Probab=98.23 E-value=2.8e-05 Score=89.77 Aligned_cols=37 Identities=19% Similarity=0.484 Sum_probs=33.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+.++||||||+|.+||++|+.+++.| +|+||||.+..
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 45689999999999999999999999 99999998754
No 160
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.22 E-value=1.3e-06 Score=70.63 Aligned_cols=31 Identities=42% Similarity=0.684 Sum_probs=28.9
Q ss_pred EECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 48 IVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 48 IVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
|||||++||++|..|+++|++|+|+||++.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 8999999999999999999999999999875
No 161
>PRK10262 thioredoxin reductase; Provisional
Probab=98.22 E-value=2e-05 Score=84.41 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=32.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
+...||+||||||+||++|..|+++|++++|||+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 56789999999999999999999999999999954
No 162
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.21 E-value=2.8e-05 Score=85.47 Aligned_cols=63 Identities=21% Similarity=0.433 Sum_probs=50.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCC--------------CCceeecC-HhHHHHHHhhhcHHHHHH
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFST--------------HPQAHFIN-NRYALVFRKLDGLAEEIE 106 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~~~--------------~~ra~~i~-~rtmeilr~l~Gl~d~l~ 106 (712)
..|+|||||++||++|+.|++++ ++++|+|+.+...- .+...... +..+++++++ |+.+.+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eL-Gled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKEL-GLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHh-CcHHhhc
Confidence 36999999999999999999999 99999999864311 12223333 6678899999 9999987
Q ss_pred h
Q 005134 107 R 107 (712)
Q Consensus 107 ~ 107 (712)
.
T Consensus 80 ~ 80 (444)
T COG1232 80 W 80 (444)
T ss_pred c
Confidence 4
No 163
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.21 E-value=2.5e-05 Score=84.50 Aligned_cols=74 Identities=23% Similarity=0.378 Sum_probs=56.4
Q ss_pred cChhHHHHHHHHHHHhc-CceeeccCccccccccccccceEEeCcEEEEEEEcCCe-EEEEEEeccCCceeeEEEEecEE
Q 005134 152 FSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNIL 229 (712)
Q Consensus 152 i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~-v~v~v~~~~~g~~~~~~i~ad~V 229 (712)
++=..|-+.|.+.+.+. ++ +++++|+|+++++.+++ ..|.+.+..+|+ ..+++|++|
T Consensus 178 VnFG~LTr~l~~~l~~~~~~-------------------~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~--~~~v~a~FV 236 (488)
T PF06039_consen 178 VNFGALTRQLVEYLQKQKGF-------------------ELHLNHEVTDIKRNGDGRWEVKVKDLKTGE--KREVRAKFV 236 (488)
T ss_pred ccHHHHHHHHHHHHHhCCCc-------------------EEEecCEeCeeEECCCCCEEEEEEecCCCC--eEEEECCEE
Confidence 34456777777777765 44 99999999999999887 888887665664 468999999
Q ss_pred EeccCCCch-hhcccCCC
Q 005134 230 IGTDGAGST-VRKLVGID 246 (712)
Q Consensus 230 VgADG~~S~-VR~~lgi~ 246 (712)
+..-|++|- +-++.||+
T Consensus 237 fvGAGG~aL~LLqksgi~ 254 (488)
T PF06039_consen 237 FVGAGGGALPLLQKSGIP 254 (488)
T ss_pred EECCchHhHHHHHHcCCh
Confidence 988888874 44556664
No 164
>PLN02568 polyamine oxidase
Probab=98.20 E-value=1.8e-05 Score=90.31 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=34.8
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCC-----CCEEEEcCCCCC
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAF 78 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~G-----i~v~lvEr~~~~ 78 (712)
.++..+|+|||||++||++|..|+++| ++|+|+|++..+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 345689999999999999999999988 999999998754
No 165
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.20 E-value=9.4e-06 Score=93.40 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=34.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
.++||+|||+|++||++|+.|+++|.+|+||||.+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4699999999999999999999999999999998643
No 166
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.20 E-value=2e-05 Score=84.97 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=35.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+..+||||||||.+||++|..|.|.|++|+|+|.+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCc
Confidence 45689999999999999999999999999999988754
No 167
>PRK06116 glutathione reductase; Validated
Probab=98.18 E-value=3.5e-05 Score=86.63 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=32.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
.++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3699999999999999999999999999999986
No 168
>PRK06370 mercuric reductase; Validated
Probab=98.15 E-value=3.5e-05 Score=87.00 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=33.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+.++||+||||||+|+++|+.|+++|.+|+||||..
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 567999999999999999999999999999999863
No 169
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.13 E-value=1.8e-05 Score=88.85 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=31.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
++||+||||||+|+++|+.++++|.+|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999984
No 170
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.13 E-value=3.4e-05 Score=87.15 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=33.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.++||+||||||+|+++|..|+++|.+|+|||+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 45999999999999999999999999999999875
No 171
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.12 E-value=4.2e-05 Score=87.81 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=33.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+.++||||||+|.+||++|+.++ .|.+|+||||.+..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~ 43 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLK 43 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCC
Confidence 56799999999999999999997 49999999998754
No 172
>PRK14694 putative mercuric reductase; Provisional
Probab=98.11 E-value=4.1e-05 Score=86.51 Aligned_cols=38 Identities=13% Similarity=0.404 Sum_probs=34.6
Q ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
|+..++||+||||||+|+++|+.|+++|.+|+|||+..
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 34567999999999999999999999999999999863
No 173
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.10 E-value=3.2e-05 Score=86.80 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=31.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
++||+||||||+|+++|+.|+++|.+|+||||.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 589999999999999999999999999999985
No 174
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.09 E-value=5.4e-05 Score=85.42 Aligned_cols=35 Identities=40% Similarity=0.690 Sum_probs=33.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.++||+||||||+|+++|..|+++|.+|+||||..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 45899999999999999999999999999999875
No 175
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.09 E-value=6.9e-05 Score=86.97 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=30.1
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 46 VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
|||||+|++||++|+.+++.|.+|+|+||.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999987
No 176
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.09 E-value=3.1e-07 Score=96.49 Aligned_cols=181 Identities=38% Similarity=0.455 Sum_probs=113.9
Q ss_pred ceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHH
Q 005134 344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL 423 (712)
Q Consensus 344 w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~ 423 (712)
|..+..+|..+-. --+.+-|+|+|.+.|+|+.+++...++..+|+|+.+. ...+.|.+|..|| ++...|..+
T Consensus 232 y~~havVAtl~l~--~~~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~-----~~a~~L~~lp~e~-fv~~lNsaf 303 (481)
T KOG3855|consen 232 YDQHAVVATLKLE--EEAILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSP-----ENASILKSLPEER-FVDLLNSAF 303 (481)
T ss_pred ccceeeeEEEEec--ccccccchhHHhcCCCCceeecccccccccceeecCH-----HHHHHHhcCCchh-HHHHHHHHH
Confidence 6667778877763 2388999999999999999999999999999999974 2467899999999 999888887
Q ss_pred HHHHHHHhcccccccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHH
Q 005134 424 SVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIF 503 (712)
Q Consensus 424 s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (712)
+.++.+..+.. ++..+. -++++..+.+.++..+.+.. .....++
T Consensus 304 ~~q~~~~~~~~------~~~~al----------------------------~~~~~~~~sl~~~~k~~~~~--q~pp~V~ 347 (481)
T KOG3855|consen 304 SSQNPRAAYSD------DADFAL----------------------------NGRAQLSESLLNTSKRLANQ--QYPPSVF 347 (481)
T ss_pred hccCCCchhhh------chhhhh----------------------------cchhhccHHHHhccCccccc--ccCCeEE
Confidence 77665433211 111000 01222222222322222211 1111222
Q ss_pred HcCCcccccccccccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecC----CCCcceeeeCCC
Q 005134 504 EEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVL----STEIISTLDLVS 578 (712)
Q Consensus 504 ~~~~~~~~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~----~~~~~St~Dl~~ 578 (712)
+-.+.....|| ||++|.+ ..|.+..+ .--|....|.|-+-+|.++||--+..+ .....+++||..
T Consensus 348 ~v~dksRa~FP---Lgf~ha~-~yV~~~~A------l~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS 416 (481)
T KOG3855|consen 348 EVGDKSRAQFP---LGFGHAD-EYVTDRVA------LIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGS 416 (481)
T ss_pred Eecccceeecc---cccccHH-HhcCCchh------hhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccc
Confidence 22334455677 8999987 44443211 111223458999999999999987642 234568888854
No 177
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.07 E-value=5.8e-05 Score=85.39 Aligned_cols=34 Identities=35% Similarity=0.623 Sum_probs=32.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
..+||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4699999999999999999999999999999985
No 178
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.06 E-value=2.9e-05 Score=89.86 Aligned_cols=38 Identities=24% Similarity=0.529 Sum_probs=34.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+.++||+|||+|++|+++|+.++++|.+|+||||....
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 45789999999999999999999999999999998643
No 179
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.05 E-value=0.00019 Score=79.23 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=32.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
++||+|||+|++|+++|+.|+++|.+|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999875
No 180
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.05 E-value=6.1e-05 Score=78.72 Aligned_cols=57 Identities=16% Similarity=0.377 Sum_probs=45.7
Q ss_pred ceEEeCcEEEEEEEcCC-eEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcc
Q 005134 189 REILMGHECVSVSATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLV 248 (712)
Q Consensus 189 ~~v~~g~~v~~v~~~~~-~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~ 248 (712)
.+++.+++|++.+.+.| .|.+++.+..+++ .++++||.+..|=|.+ |.-+-||++..
T Consensus 267 ikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k--~~tle~DvlLVsiGRr-P~t~GLgle~i 324 (506)
T KOG1335|consen 267 IKFKLGTKVTSATRNGDGPVEIEVENAKTGK--KETLECDVLLVSIGRR-PFTEGLGLEKI 324 (506)
T ss_pred ceeEeccEEEEeeccCCCceEEEEEecCCCc--eeEEEeeEEEEEccCc-ccccCCChhhc
Confidence 49999999999999888 7888888776665 6799999999999976 45555665443
No 181
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.03 E-value=0.00013 Score=82.73 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=42.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-ce-----eecCHhHHHHHHhh
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QA-----HFINNRYALVFRKL 98 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~-ra-----~~i~~rtmeilr~l 98 (712)
+||+|||+||+|+++|..|++.|++|+|||+........ .+ +.+.....++++.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVI 61 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHH
Confidence 699999999999999999999999999999998775321 22 23344455565543
No 182
>PRK12839 hypothetical protein; Provisional
Probab=98.03 E-value=2.4e-05 Score=90.12 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=34.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..++||+|||+|++||++|+.|++.|.+|+||||....
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 45799999999999999999999999999999998643
No 183
>PLN03000 amine oxidase
Probab=98.02 E-value=0.00073 Score=79.82 Aligned_cols=37 Identities=41% Similarity=0.539 Sum_probs=34.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
...+|+|||||++||++|..|++.|++|+|+|++..+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence 3589999999999999999999999999999998754
No 184
>PTZ00058 glutathione reductase; Provisional
Probab=98.02 E-value=2.2e-05 Score=89.97 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=34.5
Q ss_pred CCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 38 ~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
++...++||+||||||+|+++|+.++++|.+|.||||.
T Consensus 43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 43 KKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred cCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 33456799999999999999999999999999999986
No 185
>PLN02507 glutathione reductase
Probab=98.01 E-value=5e-05 Score=86.30 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
..++||+||||||+|+.+|..++++|.+|.|||+.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 45689999999999999999999999999999974
No 186
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.01 E-value=9.6e-05 Score=85.52 Aligned_cols=38 Identities=32% Similarity=0.525 Sum_probs=35.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..++||||||+|++||++|+.++++|.+|+||||.+..
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 35699999999999999999999999999999998754
No 187
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.01 E-value=3.9e-05 Score=82.61 Aligned_cols=150 Identities=21% Similarity=0.328 Sum_probs=81.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCceeecCHhHH--HHHHhhhcHHHHHHhcCCCccccceeE
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYA--LVFRKLDGLAEEIERSQPPVDLWRKFI 119 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~~~~~ra~~i~~rtm--eilr~l~Gl~d~l~~~~~~~~~~~~~~ 119 (712)
.+|+|+||.||++|++|++|...+ ++++.+||++....||... +..-.| ..|+.| .....|...+....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gml-l~~~~~q~~fl~Dl-------vt~~~P~s~~sfln 73 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGML-LPGARMQVSFLKDL-------VTLRDPTSPFSFLN 73 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG---SS-B-SS-TTSSS-------STTT-TTSTTSHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccC-CCCCcccccccccc-------CcCcCCCCcccHHH
Confidence 479999999999999999999887 9999999999988887432 111111 112211 01111111111000
Q ss_pred eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (712)
Q Consensus 120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~ 199 (712)
|. ...|+.. .|.. ......+|..+...|.-.+.+.+. .++|+++|++
T Consensus 74 YL-~~~~rl~---------~f~~----~~~~~p~R~ef~dYl~Wva~~~~~-------------------~v~~~~~V~~ 120 (341)
T PF13434_consen 74 YL-HEHGRLY---------EFYN----RGYFFPSRREFNDYLRWVAEQLDN-------------------QVRYGSEVTS 120 (341)
T ss_dssp HH-HHTT-HH---------HHHH----H--SS-BHHHHHHHHHHHHCCGTT-------------------TEEESEEEEE
T ss_pred HH-HHcCChh---------hhhh----cCCCCCCHHHHHHHHHHHHHhCCC-------------------ceEECCEEEE
Confidence 10 0111111 0000 012345788888888888777654 6999999999
Q ss_pred EEEcCC----eEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134 200 VSATDQ----CINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (712)
Q Consensus 200 v~~~~~----~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (712)
|+...+ ..+|++.+ .+|+ ..++.|+-||.|-|..
T Consensus 121 I~~~~~~~~~~~~V~~~~-~~g~--~~~~~ar~vVla~G~~ 158 (341)
T PF13434_consen 121 IEPDDDGDEDLFRVTTRD-SDGD--GETYRARNVVLATGGQ 158 (341)
T ss_dssp EEEEEETTEEEEEEEEEE-TTS---EEEEEESEEEE----E
T ss_pred EEEecCCCccEEEEEEee-cCCC--eeEEEeCeEEECcCCC
Confidence 987664 36777764 3343 4689999999999944
No 188
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.01 E-value=4.7e-05 Score=85.28 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=33.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+++||+||||||+|+++|+.|+++|.+|+||||.+.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 469999999999999999999999999999999863
No 189
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.00 E-value=0.00017 Score=81.44 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=34.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~ 78 (712)
..+.+|+|||||++||++|..|.+. |.+|+|+|+++.+
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~ 61 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP 61 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence 3458999999999999999999995 6899999999864
No 190
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.00 E-value=8.3e-05 Score=84.81 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=31.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+.++||||||+|.+||++|+.++ |.+|+||||.+.
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 56799999999999999999997 579999999875
No 191
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.99 E-value=8.9e-05 Score=83.67 Aligned_cols=35 Identities=34% Similarity=0.549 Sum_probs=32.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.++||+||||||+|+++|+.++++|.+|+|||++.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 35899999999999999999999999999999754
No 192
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.97 E-value=4.5e-05 Score=85.24 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcC-CeEEEEEEeccCCceeeEEEEecEEEecc
Q 005134 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINVIASFLKEGKCTERNIQCNILIGTD 233 (712)
Q Consensus 155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~-~~v~v~v~~~~~g~~~~~~i~ad~VVgAD 233 (712)
..+...|.+.+++.|+ +|+++++++++..++ ++..+.+... ++ ..+++++.||.|.
T Consensus 123 ~~l~~~L~~~a~~~Gv-------------------~i~~~~~v~~l~~~~~~g~v~gv~~~-~~---~~~i~ak~VIlAt 179 (432)
T TIGR02485 123 KALTNALYSSAERLGV-------------------EIRYGIAVDRIPPEAFDGAHDGPLTT-VG---THRITTQALVLAA 179 (432)
T ss_pred HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEecCCCCeEEEEEEc-CC---cEEEEcCEEEEcC
Confidence 3577788888888887 999999999998763 3322222211 22 1478999999999
Q ss_pred CCCchhhc
Q 005134 234 GAGSTVRK 241 (712)
Q Consensus 234 G~~S~VR~ 241 (712)
|..+.-++
T Consensus 180 GG~~~n~~ 187 (432)
T TIGR02485 180 GGLGANRD 187 (432)
T ss_pred CCcccCHH
Confidence 98776443
No 193
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.95 E-value=0.00015 Score=83.65 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=33.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.++||||||+|.+||++|+.+++.|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56999999999999999999999999999999998
No 194
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.95 E-value=0.00018 Score=82.85 Aligned_cols=37 Identities=27% Similarity=0.589 Sum_probs=33.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+.++||||||+| +|+++|+..++.|.+|+||||.+..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~ 50 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV 50 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 457999999999 8999999999999999999998653
No 195
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.94 E-value=9.8e-05 Score=83.59 Aligned_cols=33 Identities=36% Similarity=0.658 Sum_probs=31.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr 74 (712)
.++||+||||||+|+++|+.|++.|.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 368999999999999999999999999999998
No 196
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.92 E-value=5.9e-05 Score=87.17 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=31.3
Q ss_pred CEEEECCCHHHHHHHHHHH----hCCCCEEEEcCCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLT----KLGIKCSVLEKNKAF 78 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~La----r~Gi~v~lvEr~~~~ 78 (712)
||||||||.+||++|+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 7999999999999999998 789999999998643
No 197
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.91 E-value=9e-06 Score=92.05 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=34.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..+||+|||||+.||++|+.|+|+|++|+|+||+..+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~ 38 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV 38 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence 4589999999999999999999999999999998754
No 198
>PRK13748 putative mercuric reductase; Provisional
Probab=97.89 E-value=0.00022 Score=82.62 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=32.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
.++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5699999999999999999999999999999986
No 199
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.85 E-value=9.2e-05 Score=83.10 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF 78 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~ 78 (712)
+|+|||||++||++|..|+++| .+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 7999999999999999999985 589999998754
No 200
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.84 E-value=0.00018 Score=78.91 Aligned_cols=99 Identities=19% Similarity=0.374 Sum_probs=73.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+... .+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~---------------~~------------------------- 181 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS---------------LM------------------------- 181 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch---------------hC-------------------------
Confidence 47999999999999999999999999999987642100 00
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
...+...+.+.+++.|+ ++++++++++++.+
T Consensus 182 ------------------------------~~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~ 212 (377)
T PRK04965 182 ------------------------------PPEVSSRLQHRLTEMGV-------------------HLLLKSQLQGLEKT 212 (377)
T ss_pred ------------------------------CHHHHHHHHHHHHhCCC-------------------EEEECCeEEEEEcc
Confidence 00122334555666676 89999999999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (712)
++++.+++. +|+ ++.+|+||.|.|..+.
T Consensus 213 ~~~~~v~~~---~g~----~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 213 DSGIRATLD---SGR----SIEVDAVIAAAGLRPN 240 (377)
T ss_pred CCEEEEEEc---CCc----EEECCEEEECcCCCcc
Confidence 777655543 443 6899999999998653
No 201
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.84 E-value=8.5e-05 Score=81.47 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=32.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
++|+|||||++|+.+|+.|+++|++|+|||+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 58999999999999999999999999999988763
No 202
>PRK14727 putative mercuric reductase; Provisional
Probab=97.83 E-value=0.00018 Score=81.59 Aligned_cols=43 Identities=16% Similarity=0.378 Sum_probs=36.6
Q ss_pred CccCCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 35 KTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 35 ~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+++.-...++||+||||||+|+++|..|+++|.+|+||||...
T Consensus 8 ~~~~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~ 50 (479)
T PRK14727 8 NCMTRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV 50 (479)
T ss_pred cccccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence 3334445679999999999999999999999999999998743
No 203
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.83 E-value=0.00014 Score=82.05 Aligned_cols=31 Identities=39% Similarity=0.734 Sum_probs=30.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr 74 (712)
+||+||||||+|+++|..|+++|.+|+|||+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 8999999999999999999999999999998
No 204
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.83 E-value=0.00014 Score=79.25 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=36.1
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~ 79 (712)
+..++||||||||-+|.-+|+--+-+|+++.++|+...-+
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~S 103 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFAS 103 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhcccceeEEEecccccC
Confidence 3556999999999999999999999999999999997653
No 205
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.81 E-value=0.00049 Score=84.56 Aligned_cols=37 Identities=30% Similarity=0.559 Sum_probs=34.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..+||+||||||+||++|+.|++.|++|+|||+.+.+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~ 198 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA 198 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3589999999999999999999999999999998764
No 206
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.79 E-value=0.0001 Score=75.20 Aligned_cols=54 Identities=30% Similarity=0.390 Sum_probs=41.4
Q ss_pred ccccccCCCCccCCCCcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCC
Q 005134 26 TQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFST 80 (712)
Q Consensus 26 ~~~~~~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~~ 80 (712)
+-.+.++.-.+. .+..++|.+|||||++||+.|..|.-+ +.+|.|+|+......
T Consensus 32 t~~R~i~gg~~s-~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~ 87 (453)
T KOG2665|consen 32 TIKRGISGGAES-ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV 87 (453)
T ss_pred ceeccccCCccc-cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence 334444444322 236789999999999999999999877 999999999887643
No 207
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.78 E-value=8.3e-05 Score=84.56 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=31.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
.+||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 208
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.78 E-value=0.00015 Score=81.17 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=31.8
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS 79 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~ 79 (712)
+|+|||||++|+.+|..|+++ +.+|+|||+.+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 799999999999999999987 68999999997654
No 209
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00036 Score=77.84 Aligned_cols=200 Identities=16% Similarity=0.212 Sum_probs=102.4
Q ss_pred cCcCcCcccccccccCCCCccCCCCcccCEEEECCCHHHHHHHHHHHhCCCCEE-EEcCCCCC---CCCCceee----cC
Q 005134 17 KTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCS-VLEKNKAF---STHPQAHF----IN 88 (712)
Q Consensus 17 ~~~~~p~~~~~~~~~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~-lvEr~~~~---~~~~ra~~----i~ 88 (712)
+...+..+--+.......+..+.-....||+|||||.+|..+|+.|++.|.+.. +.||.... ..++.+.. .+
T Consensus 13 ~~~~~~v~~~qg~~~~~~s~s~~~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~lr~~ 92 (856)
T KOG2844|consen 13 KGVPYQVKERQGTSVVARSPSTPLPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQLFPS 92 (856)
T ss_pred CCCchhhcccCcccccccCccccCCCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceeeccCC
Confidence 333333444444333333322222345899999999999999999999999944 45554332 33333321 11
Q ss_pred HhHHHHHHhh-hcHHHHHHhc-CCCccccce--eEee-ecC---------------CCCeeeee---------cCCCccc
Q 005134 89 NRYALVFRKL-DGLAEEIERS-QPPVDLWRK--FIYC-TSV---------------TGPILGSV---------DHMQPQD 139 (712)
Q Consensus 89 ~rtmeilr~l-~Gl~d~l~~~-~~~~~~~~~--~~~~-~~~---------------~G~~l~~~---------~~~~~~~ 139 (712)
+-.++++..- .-+..++.+. +.+. .|.. ..+. ++. .|.+-.-+ +....++
T Consensus 93 dv~~qlia~~~~~l~~~leeEtgl~t-Gwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~ 171 (856)
T KOG2844|consen 93 DVELQLIAHTSRVLYRELEEETGLHT-GWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDD 171 (856)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCc-ceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhH
Confidence 2222332210 0122233332 2221 1111 0010 000 00000000 0011111
Q ss_pred c-ccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCc
Q 005134 140 F-EKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGK 218 (712)
Q Consensus 140 ~-~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~ 218 (712)
+ ....+|.. ..++-.-|.+.|...+.+.|+ .|..++-|+++....+.+. -|+. .-|
T Consensus 172 v~g~Ly~P~D-G~~DP~~lC~ala~~A~~~GA-------------------~viE~cpV~~i~~~~~~~~-gVeT-~~G- 228 (856)
T KOG2844|consen 172 VYGGLYSPGD-GVMDPAGLCQALARAASALGA-------------------LVIENCPVTGLHVETDKFG-GVET-PHG- 228 (856)
T ss_pred heeeeecCCC-cccCHHHHHHHHHHHHHhcCc-------------------EEEecCCcceEEeecCCcc-ceec-cCc-
Confidence 1 11123432 456677889999999999998 8889999998866544322 2321 123
Q ss_pred eeeEEEEecEEEeccCCCc-hhhcccC
Q 005134 219 CTERNIQCNILIGTDGAGS-TVRKLVG 244 (712)
Q Consensus 219 ~~~~~i~ad~VVgADG~~S-~VR~~lg 244 (712)
.|++.++|.|-|.+. .|-+..|
T Consensus 229 ----~iet~~~VNaaGvWAr~Vg~m~g 251 (856)
T KOG2844|consen 229 ----SIETECVVNAAGVWAREVGAMAG 251 (856)
T ss_pred ----ceecceEEechhHHHHHhhhhcC
Confidence 589999999999985 3444334
No 210
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.75 E-value=0.00049 Score=85.79 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=35.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+.++||||||+|.+||++|+..++.|.+|+|+||.+..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 56799999999999999999999999999999998754
No 211
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.71 E-value=0.00037 Score=78.69 Aligned_cols=103 Identities=20% Similarity=0.327 Sum_probs=75.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~ 122 (712)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+ ++.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-------------------~~d-------------------- 214 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-------------------GTD-------------------- 214 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-------------------CCC--------------------
Confidence 36799999999999999999999999999998654310 000
Q ss_pred cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (712)
Q Consensus 123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~ 202 (712)
..+...|.+.+++.|+ +++.++++++++.
T Consensus 215 --------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~ 243 (466)
T PRK06115 215 --------------------------------TETAKTLQKALTKQGM-------------------KFKLGSKVTGATA 243 (466)
T ss_pred --------------------------------HHHHHHHHHHHHhcCC-------------------EEEECcEEEEEEE
Confidence 0122334455566666 9999999999988
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
+++++.+++...++|+ ..++.+|+||.|-|...
T Consensus 244 ~~~~v~v~~~~~~~g~--~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 244 GADGVSLTLEPAAGGA--AETLQADYVLVAIGRRP 276 (466)
T ss_pred cCCeEEEEEEEcCCCc--eeEEEeCEEEEccCCcc
Confidence 7777776665433332 34799999999999764
No 212
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.68 E-value=0.00041 Score=78.23 Aligned_cols=101 Identities=19% Similarity=0.317 Sum_probs=74.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~ 122 (712)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+ .+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~----------------~~------------------------ 209 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP----------------GE------------------------ 209 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC----------------CC------------------------
Confidence 35899999999999999999999999999998863210 00
Q ss_pred cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (712)
Q Consensus 123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~ 202 (712)
...+...+.+.+++.|+ ++++++++++++.
T Consensus 210 -------------------------------~~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~ 239 (461)
T TIGR01350 210 -------------------------------DAEVSKVVAKALKKKGV-------------------KILTNTKVTAVEK 239 (461)
T ss_pred -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEE
Confidence 01122334455666676 9999999999988
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (712)
Q Consensus 203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (712)
+++++++... +|+ +.++.+|.||.|-|....
T Consensus 240 ~~~~v~v~~~---~g~--~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 240 NDDQVVYENK---GGE--TETLTGEKVLVAVGRKPN 270 (461)
T ss_pred eCCEEEEEEe---CCc--EEEEEeCEEEEecCCccc
Confidence 7777665443 342 246899999999997764
No 213
>PRK07208 hypothetical protein; Provisional
Probab=97.67 E-value=4.5e-05 Score=86.49 Aligned_cols=38 Identities=37% Similarity=0.545 Sum_probs=34.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
|...+|+|||||++||++|+.|+++|++|+|+|+++..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~ 39 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVV 39 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 45679999999999999999999999999999998754
No 214
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.66 E-value=4.3e-05 Score=85.66 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=33.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+++||+||||||+|+++|+.|+++|.+|+||||.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 46999999999999999999999999999999975
No 215
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.66 E-value=0.00016 Score=88.02 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=34.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
..++||||||||.+||++|+.+++.|.+|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3568999999999999999999999999999999874
No 216
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.65 E-value=6.8e-05 Score=84.14 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=33.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTK--LGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar--~Gi~v~lvEr~~~~ 78 (712)
....+|+||||||+||.+|..|++ .|++|+||||.+.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 345789999999999999999987 79999999999754
No 217
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.64 E-value=0.00026 Score=67.38 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=27.4
Q ss_pred EEECCCHHHHHHHHHHHhC-----CCCEEEEcCCCC
Q 005134 47 LIVGAGPVGLVLSILLTKL-----GIKCSVLEKNKA 77 (712)
Q Consensus 47 lIVGaGpaGL~~A~~Lar~-----Gi~v~lvEr~~~ 77 (712)
+||||||+|++++..|.++ .++++|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999888 579999999543
No 218
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.63 E-value=0.00073 Score=77.19 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=36.4
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~ 79 (712)
...++||||||||.+||.+|+.++..|++|+|+||.....
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 3567999999999999999999999999999999987653
No 219
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.62 E-value=0.00055 Score=77.24 Aligned_cols=100 Identities=20% Similarity=0.350 Sum_probs=73.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+. + .
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------~---~--------------------- 212 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG----------------E---D--------------------- 212 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc----------------C---C---------------------
Confidence 57999999999999999999999999999987643100 0 0
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
..+...+.+.+++.|+ ++++++++++++.+
T Consensus 213 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~~ 242 (462)
T PRK06416 213 -------------------------------KEISKLAERALKKRGI-------------------KIKTGAKAKKVEQT 242 (462)
T ss_pred -------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEEe
Confidence 0112234445556666 99999999999988
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
++++++.+. ++|+ +.++.+|+||-|-|...
T Consensus 243 ~~~v~v~~~--~gg~--~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 243 DDGVTVTLE--DGGK--EETLEADYVLVAVGRRP 272 (462)
T ss_pred CCEEEEEEE--eCCe--eEEEEeCEEEEeeCCcc
Confidence 777666554 2332 35799999999999764
No 220
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.62 E-value=0.00049 Score=76.72 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=34.1
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
.+.+.+|||||||.+|+.+|..|.+.+++++|||+++..
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 355689999999999999999998888999999988753
No 221
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.61 E-value=0.0011 Score=74.79 Aligned_cols=32 Identities=22% Similarity=0.590 Sum_probs=30.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+|+||||||+|+++|..|++.|.+|+||||.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 89999999999999999999999999999875
No 222
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.60 E-value=0.00075 Score=75.02 Aligned_cols=112 Identities=26% Similarity=0.407 Sum_probs=81.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~ 121 (712)
..-.++|||||+.|+=+|..+++.|.+|+|||+.+.+-+ +..
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-------------------~~D------------------- 213 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-------------------GED------------------- 213 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-------------------cCC-------------------
Confidence 345799999999999999999999999999999885421 111
Q ss_pred ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (712)
Q Consensus 122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~ 201 (712)
.++-+.|.+.+++.|+ .++.+++++.++
T Consensus 214 ---------------------------------~ei~~~~~~~l~~~gv-------------------~i~~~~~v~~~~ 241 (454)
T COG1249 214 ---------------------------------PEISKELTKQLEKGGV-------------------KILLNTKVTAVE 241 (454)
T ss_pred ---------------------------------HHHHHHHHHHHHhCCe-------------------EEEccceEEEEE
Confidence 1223445555556444 899999999999
Q ss_pred EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCccc
Q 005134 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG 249 (712)
Q Consensus 202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g 249 (712)
..++++.+++. +|.. .++++|.|+.|=|..-.+ +.||++..|
T Consensus 242 ~~~~~v~v~~~---~g~~--~~~~ad~vLvAiGR~Pn~-~~LgLe~~G 283 (454)
T COG1249 242 KKDDGVLVTLE---DGEG--GTIEADAVLVAIGRKPNT-DGLGLENAG 283 (454)
T ss_pred ecCCeEEEEEe---cCCC--CEEEeeEEEEccCCccCC-CCCChhhcC
Confidence 98888777776 3321 278999999999966443 344544443
No 223
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.58 E-value=0.00065 Score=76.71 Aligned_cols=33 Identities=27% Similarity=0.653 Sum_probs=31.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.+|+||||||+|+.+|..|+++|.+|+||||.+
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 379999999999999999999999999999875
No 224
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.58 E-value=0.00085 Score=73.12 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=89.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC---CCc---eeecCH---------------------hHHHHHHh
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST---HPQ---AHFINN---------------------RYALVFRK 97 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~---~~r---a~~i~~---------------------rtmeilr~ 97 (712)
||+|||+|.+||++|+.|.+. .+|+|+-|.+.... .-+ +..+.+ .+.+.+-.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999999 99999999876521 111 111111 11111111
Q ss_pred -hhcHHHHHHhcCCCccccceeEeeecCCCCeeeeecCCCccccccccCCccccc---cChhHHHHHHHHHHHhcCceee
Q 005134 98 -LDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH---FSQYKLNKLLLKQLEKLNFKIC 173 (712)
Q Consensus 98 -l~Gl~d~l~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~---i~q~~Le~~L~~~~~~~g~~~~ 173 (712)
-+-..+.+...|.+.+....-.+...+.|- .+-....+ -.=..+.+.|.+++++.+.
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~Egg----------------HS~rRIlH~~~~TG~~I~~~L~~~v~~~p~--- 148 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGG----------------HSRRRILHAADATGKEIMTALLKKVRNRPN--- 148 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecc----------------cCCceEEEecCCccHHHHHHHHHHHhcCCC---
Confidence 011223334445443321111111111110 00000111 1224677888888887543
Q ss_pred ccCccccccccccccceEEeCcEEEEEEEcCC-eE-EEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134 174 TSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CI-NVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (712)
Q Consensus 174 ~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~-~v-~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V 239 (712)
+++..++.+..+..+++ ++ -+.+. +.+. +..+++++.||-|.|.-+.+
T Consensus 149 ---------------I~v~e~~~a~~li~~~~~~~~Gv~~~--~~~~-~~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 149 ---------------ITVLEGAEALDLIIEDGIGVAGVLVL--NRNG-ELGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred ---------------cEEEecchhhhhhhcCCceEeEEEEe--cCCC-eEEEEecCeEEEecCCCccc
Confidence 69999999999988777 43 23333 1222 35689999999999987765
No 225
>PLN02487 zeta-carotene desaturase
Probab=97.58 E-value=0.00013 Score=83.67 Aligned_cols=64 Identities=22% Similarity=0.346 Sum_probs=50.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--------CCc-----eee---cCHhHHHHHHhhhcHHHHH
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--------HPQ-----AHF---INNRYALVFRKLDGLAEEI 105 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~--------~~r-----a~~---i~~rtmeilr~l~Gl~d~l 105 (712)
...+|+|||||++||++|+.|+++|++|+|+|+++...- .+. .+. ..+..+++++++ |+.+++
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~L-Gl~~~~ 152 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKV-GADENL 152 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhc-CCcccc
Confidence 346999999999999999999999999999999886531 111 111 246789999999 998776
Q ss_pred H
Q 005134 106 E 106 (712)
Q Consensus 106 ~ 106 (712)
.
T Consensus 153 ~ 153 (569)
T PLN02487 153 L 153 (569)
T ss_pred c
Confidence 4
No 226
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.58 E-value=0.00065 Score=76.98 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=31.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
++||+||||||+|+.+|+.++++|.+|.|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999985
No 227
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.57 E-value=0.00032 Score=77.45 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=32.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~~ 78 (712)
..+|+|||||++|+++|..|+++|. +++|+++.+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 4589999999999999999999987 79999988654
No 228
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.56 E-value=7e-05 Score=85.22 Aligned_cols=35 Identities=34% Similarity=0.591 Sum_probs=33.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
.||+|||||++||++|..|+++|++|+|+||+..+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 68999999999999999999999999999999755
No 229
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.56 E-value=0.00068 Score=74.86 Aligned_cols=34 Identities=38% Similarity=0.506 Sum_probs=31.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 4799999999999999999999999999998763
No 230
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.54 E-value=8.5e-05 Score=83.58 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=35.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..+.+|+|||||++||++|..|...|++|+|+|.+..+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 55689999999999999999999999999999998754
No 231
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.53 E-value=8.5e-05 Score=84.53 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=33.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+||+|||||++||++|..|+++|.+|+|+||+..+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 58999999999999999999999999999999865
No 232
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.53 E-value=0.00011 Score=83.11 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=46.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------Cce-------ee---cCHhHHHHHHhhhcHHHHHH
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQA-------HF---INNRYALVFRKLDGLAEEIE 106 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~------~ra-------~~---i~~rtmeilr~l~Gl~d~l~ 106 (712)
+|+|||||++||++|..|+++|++|+|+|+++.+.-. ..+ +. ..++.+++++++ |+.+.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~l-g~~~~~~ 77 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKV-GAEDNLL 77 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHc-CCccccc
Confidence 5899999999999999999999999999998765211 011 11 236678888888 8876654
No 233
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.53 E-value=0.0013 Score=74.35 Aligned_cols=101 Identities=23% Similarity=0.403 Sum_probs=73.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-+ ..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------~~---------------------- 211 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-------------------NE---------------------- 211 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-------------------cc----------------------
Confidence 5899999999999999999999999999997653210 00
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
...+...|.+.+++.|+ ++++++++++++.+
T Consensus 212 ------------------------------d~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~ 242 (466)
T PRK07818 212 ------------------------------DAEVSKEIAKQYKKLGV-------------------KILTGTKVESIDDN 242 (466)
T ss_pred ------------------------------CHHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEEe
Confidence 01122334555666676 99999999999877
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
++.+++++.. .+|+ ..++.+|.||.|-|...
T Consensus 243 ~~~~~v~~~~-~~g~--~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 243 GSKVTVTVSK-KDGK--AQELEADKVLQAIGFAP 273 (466)
T ss_pred CCeEEEEEEe-cCCC--eEEEEeCEEEECcCccc
Confidence 6666655542 2343 34799999999999654
No 234
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.52 E-value=0.001 Score=75.30 Aligned_cols=102 Identities=22% Similarity=0.338 Sum_probs=74.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
-+|+|||||++|+-+|..|++.|.+|+|||+.+.+.. ...
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~d--------------------- 223 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------AAD--------------------- 223 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------cCC---------------------
Confidence 5899999999999999999999999999998764310 000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
..+...+.+.+++.|+ +++.++++++++.+
T Consensus 224 -------------------------------~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~~ 253 (475)
T PRK06327 224 -------------------------------EQVAKEAAKAFTKQGL-------------------DIHLGVKIGEIKTG 253 (475)
T ss_pred -------------------------------HHHHHHHHHHHHHcCc-------------------EEEeCcEEEEEEEc
Confidence 0122234444555665 99999999999988
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (712)
++++.+.+.+. +| ++.++.+|.||.|-|....
T Consensus 254 ~~~v~v~~~~~-~g--~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 254 GKGVSVAYTDA-DG--EAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred CCEEEEEEEeC-CC--ceeEEEcCEEEEccCCccC
Confidence 77776665421 23 2357999999999996654
No 235
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.52 E-value=0.0011 Score=74.73 Aligned_cols=100 Identities=14% Similarity=0.291 Sum_probs=72.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+ ...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~d--------------------- 206 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-------------------REE--------------------- 206 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-------------------ccC---------------------
Confidence 6899999999999999999999999999998754310 000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
..+...+.+.+++.|+ ++++++++++++.+
T Consensus 207 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~~ 236 (463)
T TIGR02053 207 -------------------------------PEISAAVEEALAEEGI-------------------EVVTSAQVKAVSVR 236 (463)
T ss_pred -------------------------------HHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEc
Confidence 0111234444555665 99999999999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
++.+.+++.. ++. ..++.+|.||.|-|...
T Consensus 237 ~~~~~v~~~~--~~~--~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 237 GGGKIITVEK--PGG--QGEVEADELLVATGRRP 266 (463)
T ss_pred CCEEEEEEEe--CCC--ceEEEeCEEEEeECCCc
Confidence 6666665542 121 24789999999999654
No 236
>PRK06370 mercuric reductase; Validated
Probab=97.51 E-value=0.00097 Score=75.28 Aligned_cols=100 Identities=18% Similarity=0.318 Sum_probs=73.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. +..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------~~~--------------------- 211 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-------------------RED--------------------- 211 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-------------------ccC---------------------
Confidence 5899999999999999999999999999998764310 000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
..+.+.+.+.+++.|+ ++++++++++++.+
T Consensus 212 -------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~~ 241 (463)
T PRK06370 212 -------------------------------EDVAAAVREILEREGI-------------------DVRLNAECIRVERD 241 (463)
T ss_pred -------------------------------HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEc
Confidence 0112234455566666 99999999999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
++++.+.+... ++ ..++.+|.||.|-|...
T Consensus 242 ~~~~~v~~~~~-~~---~~~i~~D~Vi~A~G~~p 271 (463)
T PRK06370 242 GDGIAVGLDCN-GG---APEITGSHILVAVGRVP 271 (463)
T ss_pred CCEEEEEEEeC-CC---ceEEEeCEEEECcCCCc
Confidence 77766655432 22 24689999999999654
No 237
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.47 E-value=0.0012 Score=74.54 Aligned_cols=35 Identities=29% Similarity=0.553 Sum_probs=32.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 35899999999999999999999999999998764
No 238
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.00012 Score=80.35 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=33.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
++|+|+|||++||++|..|+.+|++|+|+|+++.+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~ 35 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCcc
Confidence 47999999999999999999999999999999875
No 239
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.44 E-value=0.00012 Score=82.58 Aligned_cols=34 Identities=38% Similarity=0.635 Sum_probs=32.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
.++||+||||||+|+++|..|++.|.+|+|||+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4599999999999999999999999999999983
No 240
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.42 E-value=0.00011 Score=83.72 Aligned_cols=33 Identities=36% Similarity=0.562 Sum_probs=31.5
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 46 VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
|+|||||++||++|..|++.|++|+|+||+..+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~ 33 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP 33 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 699999999999999999999999999999865
No 241
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.42 E-value=0.00019 Score=79.59 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=32.0
Q ss_pred ccCEEEECCCHHHHHHHHHH-HhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILL-TKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~L-ar~Gi~v~lvEr~~~~ 78 (712)
...|+||||||+||.+|..| ++.|++|+||||.+.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 46899999999999999965 5779999999999876
No 242
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.42 E-value=0.00014 Score=82.17 Aligned_cols=34 Identities=41% Similarity=0.681 Sum_probs=32.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
.++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3599999999999999999999999999999986
No 243
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00015 Score=74.49 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=41.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhh
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l 98 (712)
+++||+|||||.+||++|+.|+++|.+|.||-+... +.-++..++.+|.++
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs------ALhfsSGslDlL~~l 51 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS------ALHFSSGSLDLLGRL 51 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh------hhhcccccHHHhhcC
Confidence 369999999999999999999999999999988754 334455566677666
No 244
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.40 E-value=0.00015 Score=77.94 Aligned_cols=37 Identities=27% Similarity=0.562 Sum_probs=34.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..-+|||||||++|+++|+.|++.|++|.|+||.+..
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi 159 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI 159 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 3468999999999999999999999999999999875
No 245
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.39 E-value=0.0014 Score=74.19 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=31.9
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
-+|+|||||++|+-+|..|++.|.+|+|||+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 5899999999999999999999999999998864
No 246
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.38 E-value=0.00018 Score=78.22 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=32.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+||+|||||++||++|..|++.|.+|+|+|++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 69999999999999999999999999999997643
No 247
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.37 E-value=0.0014 Score=66.37 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=88.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCC------CCEEEEcCCCCC-CCCCceeec-------------CHhHHHHHHhhhcHHH
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNKAF-STHPQAHFI-------------NNRYALVFRKLDGLAE 103 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~G------i~v~lvEr~~~~-~~~~ra~~i-------------~~rtmeilr~l~Gl~d 103 (712)
.+|+|||||+.|..+|++|++++ +.++|||++.-. ...+++.++ .+-+..+-+ +|.|
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~---~Lsd 87 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHE---ELSD 87 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHH---HHHH
Confidence 78999999999999999999998 899999988643 222333221 111222222 3344
Q ss_pred HHHhcCCCccccceeEe------ee---cCCCCeeeeecCCCc---cccccccCCccccccChhHHHHHHHHHHHhcCce
Q 005134 104 EIERSQPPVDLWRKFIY------CT---SVTGPILGSVDHMQP---QDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFK 171 (712)
Q Consensus 104 ~l~~~~~~~~~~~~~~~------~~---~~~G~~l~~~~~~~~---~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~ 171 (712)
++.- .+.|..... .. ...++.-..+++... +......+.....++.-..|.+.+++.+.+.|.
T Consensus 88 eydG----vnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~- 162 (380)
T KOG2852|consen 88 EYDG----VNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGG- 162 (380)
T ss_pred hhcC----cccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcC-
Confidence 4322 222221100 00 000000000111111 111111222334566778899999999998874
Q ss_pred eeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134 172 ICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (712)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (712)
+++.+|+ |.++..+...+.-.......++ -.....+-+|.+-|.++.
T Consensus 163 -----------------V~lv~Gk-v~ev~dEk~r~n~v~~ae~~~t--i~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 163 -----------------VKLVFGK-VKEVSDEKHRINSVPKAEAEDT--IIKADVHKIVVSAGPWTS 209 (380)
T ss_pred -----------------eEEEEee-eEEeecccccccccchhhhcCc--eEEeeeeEEEEecCCCch
Confidence 5888885 4455433333222211111121 145678899999999864
No 248
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.36 E-value=0.00018 Score=86.67 Aligned_cols=37 Identities=32% Similarity=0.557 Sum_probs=33.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
...+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 3479999999999999999999999999999998754
No 249
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.34 E-value=0.0015 Score=73.17 Aligned_cols=35 Identities=34% Similarity=0.519 Sum_probs=32.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.-+|+|||||++|+.+|..|++.|.+|+|+|+.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 35799999999999999999999999999999764
No 250
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.32 E-value=0.0019 Score=69.72 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (712)
Q Consensus 157 Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (712)
+.+-+++.++++|. +++|+++|..++..++.+..... .+| +++.+|+||.|=|..
T Consensus 175 vvkni~~~l~~~G~-------------------ei~f~t~VeDi~~~~~~~~~v~~--~~g----~~i~~~~vvlA~Grs 229 (486)
T COG2509 175 VVKNIREYLESLGG-------------------EIRFNTEVEDIEIEDNEVLGVKL--TKG----EEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHhcCc-------------------EEEeeeEEEEEEecCCceEEEEc--cCC----cEEecCEEEEccCcc
Confidence 44557788888887 99999999999988876443332 245 379999999999966
Q ss_pred ch-----hhcccCCCcc
Q 005134 237 ST-----VRKLVGIDLV 248 (712)
Q Consensus 237 S~-----VR~~lgi~~~ 248 (712)
+. +-+++|+.+.
T Consensus 230 g~dw~~~l~~K~Gv~~~ 246 (486)
T COG2509 230 GRDWFEMLHKKLGVKMR 246 (486)
T ss_pred hHHHHHHHHHhcCcccc
Confidence 52 3345566554
No 251
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.32 E-value=0.0022 Score=72.66 Aligned_cols=35 Identities=29% Similarity=0.577 Sum_probs=32.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 35899999999999999999999999999998864
No 252
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.32 E-value=0.0029 Score=71.70 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=31.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKN 75 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~ 75 (712)
.++||+||||||+|.++|+.+++. |.+|.||||.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 358999999999999999999996 9999999984
No 253
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.30 E-value=0.0028 Score=71.54 Aligned_cols=99 Identities=16% Similarity=0.266 Sum_probs=72.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+... . .
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~----------------~---d--------------------- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG----------------E---D--------------------- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC----------------C---C---------------------
Confidence 47999999999999999999999999999986543100 0 0
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
..+...|.+.+++.|+ +++.++++++++.+
T Consensus 218 -------------------------------~~~~~~l~~~L~~~gV-------------------~i~~~~~v~~v~~~ 247 (466)
T PRK07845 218 -------------------------------ADAAEVLEEVFARRGM-------------------TVLKRSRAESVERT 247 (466)
T ss_pred -------------------------------HHHHHHHHHHHHHCCc-------------------EEEcCCEEEEEEEe
Confidence 0112234455566666 89999999999877
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V 239 (712)
++++++.+. +|+ ++.+|.||.|-|.....
T Consensus 248 ~~~~~v~~~---~g~----~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 248 GDGVVVTLT---DGR----TVEGSHALMAVGSVPNT 276 (466)
T ss_pred CCEEEEEEC---CCc----EEEecEEEEeecCCcCC
Confidence 777665543 343 68999999999977543
No 254
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.29 E-value=0.00024 Score=80.25 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=31.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+||+||||||+|+++|+.|+++|.+|+||||.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999864
No 255
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.29 E-value=0.0019 Score=71.24 Aligned_cols=46 Identities=17% Similarity=0.310 Sum_probs=35.9
Q ss_pred cceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhh
Q 005134 188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR 240 (712)
Q Consensus 188 ~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR 240 (712)
+.+|+++++|++|+.++++|++++. +|+ +++||+||.|=......+
T Consensus 223 g~~i~l~~~V~~I~~~~~~v~v~~~---~g~----~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 223 GGEIRLNTPVTRIEREDGGVTVTTE---DGE----TIEADAVISAVPPSVLKN 268 (450)
T ss_dssp GGGEESSEEEEEEEEESSEEEEEET---TSS----EEEESEEEE-S-HHHHHT
T ss_pred CceeecCCcceeccccccccccccc---cce----EEecceeeecCchhhhhh
Confidence 3589999999999999999887775 453 789999999887765554
No 256
>PRK12831 putative oxidoreductase; Provisional
Probab=97.27 E-value=0.00028 Score=79.48 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=33.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
...+|+||||||+||++|..|+++|++|+|||+.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~ 174 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE 174 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 457999999999999999999999999999998764
No 257
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.27 E-value=0.00023 Score=86.26 Aligned_cols=36 Identities=33% Similarity=0.601 Sum_probs=33.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~ 341 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL 341 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence 578999999999999999999999999999998754
No 258
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.24 E-value=0.0026 Score=71.49 Aligned_cols=97 Identities=20% Similarity=0.381 Sum_probs=70.8
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. ++.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------~~d--------------------- 206 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR-------------------GFD--------------------- 206 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc-------------------ccC---------------------
Confidence 4799999999999999999999999999998654210 000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
..+...+.+.+++.|+ +++.++++++++.+
T Consensus 207 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~ 236 (446)
T TIGR01424 207 -------------------------------DDMRALLARNMEGRGI-------------------RIHPQTSLTSITKT 236 (446)
T ss_pred -------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEEc
Confidence 0112234445566666 99999999999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
++++.+++. +|+ ++.+|.||-|-|...
T Consensus 237 ~~~~~v~~~---~g~----~i~~D~viva~G~~p 263 (446)
T TIGR01424 237 DDGLKVTLS---HGE----EIVADVVLFATGRSP 263 (446)
T ss_pred CCeEEEEEc---CCc----EeecCEEEEeeCCCc
Confidence 777665543 342 689999999998643
No 259
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=97.23 E-value=0.0018 Score=62.18 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=62.8
Q ss_pred CCCCCcceeec-CCCCcceeeeCCCCCcceEEEEEcCCccc-hHHHHHHHHhhhhcC-----------------CceEEE
Q 005134 555 GSRLPHMNVRV-LSTEIISTLDLVSGDKVEFLLIIAPVEES-YHLARAALKVAEDFK-----------------VPTKVC 615 (712)
Q Consensus 555 G~R~PH~~l~~-~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~-~~~~~aa~~~~~~~g-----------------~~~~~~ 615 (712)
|.|+|-+.+.+ .++..+-+.+++..+ +.|-++.+++... ..........++.+. --+.+.
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~ad-GrfrI~vFagd~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 79 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPAD-GRFRIYVFAGDIAPAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFDVV 79 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCC-CCEEEEEEcCCCCchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEEEE
Confidence 78999998876 345556666666543 2588887765321 123333334443331 125556
Q ss_pred EEcCCC-Ccchhhhhhcccc---------CCCCcccchhhhcccCCccchhhhhccc--CCceEEEcCCceEEEeeC
Q 005134 616 VLWPAG-TTNEVEFRSAAEL---------APWKNYIDVEEVKRSSDSLSWWRICKMT--DMGAILVRPDDHIAWRSK 680 (712)
Q Consensus 616 ~~~~~~-~~~~~~~~~~~~~---------~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~gavLVRPDg~VaWr~~ 680 (712)
.|..+. .+.|-.+- +... .-|..|.|-.. .....+.-++.+|+. ..++|+|||||||+|.+.
T Consensus 80 ~I~~~~~~~~e~~dl-P~~~~p~~~~~~~~~~~v~~d~~~--~~~~~~~~~~~~gv~~~~g~vvvvRPDgyVg~~~~ 153 (167)
T cd02979 80 TIHAAPRREIELLDL-PAVLRPFGEKKGWDYEKIYADDDS--YHEGHGDAYEKYGIDPERGAVVVVRPDQYVALVGP 153 (167)
T ss_pred EEecCCccccchhhC-cHhhcCCCCccccceeeEEecCcc--ccCCcccHHHhhCCCCCCCCEEEECCCCeEEEEec
Confidence 653221 11111111 1111 12233444110 000113456678998 457899999999999875
No 260
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.23 E-value=0.0015 Score=71.13 Aligned_cols=34 Identities=9% Similarity=0.295 Sum_probs=29.7
Q ss_pred CEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF 78 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~---Gi~v~lvEr~~~~ 78 (712)
+|||||||++|+.+|..|.++ +.+++|||+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 589999999999999999754 6899999988763
No 261
>PRK07846 mycothione reductase; Reviewed
Probab=97.21 E-value=0.0031 Score=70.85 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=32.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 36899999999999999999999999999998764
No 262
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.21 E-value=0.0024 Score=70.00 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=30.8
Q ss_pred cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~ 78 (712)
.+|+|||||++|+++|..|.++ ..+++||++.+..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~ 39 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD 39 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence 5899999999999999999886 5689999988753
No 263
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.20 E-value=0.0024 Score=71.75 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=32.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 35899999999999999999999999999998864
No 264
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.19 E-value=0.00033 Score=77.88 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=36.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~ 79 (712)
++++||+|||+|.+|+++|..|++.|.+|+++||+...-
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yG 40 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYG 40 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcC
Confidence 457999999999999999999999999999999998763
No 265
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00052 Score=70.97 Aligned_cols=112 Identities=21% Similarity=0.368 Sum_probs=71.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEE-cCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVL-EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lv-Er~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~ 119 (712)
...+|||||||||+|.++|++-+|.|++.=|+ ||--. .+|+.+ +++.-+ +.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGG---------------QvldT~-~IENfI---sv--------- 260 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGG---------------QVLDTM-GIENFI---SV--------- 260 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCC---------------eecccc-chhhee---cc---------
Confidence 34599999999999999999999999986443 33211 223333 332100 00
Q ss_pred eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (712)
Q Consensus 120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~ 199 (712)
| ...-.+|...|.++++++.+ ++.-..+.++
T Consensus 261 --------------------------~----~teGpkl~~ale~Hv~~Y~v-------------------Dimn~qra~~ 291 (520)
T COG3634 261 --------------------------P----ETEGPKLAAALEAHVKQYDV-------------------DVMNLQRASK 291 (520)
T ss_pred --------------------------c----cccchHHHHHHHHHHhhcCc-------------------hhhhhhhhhc
Confidence 0 01123566778888887766 5555555666
Q ss_pred EEEc---CCeEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134 200 VSAT---DQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (712)
Q Consensus 200 v~~~---~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (712)
++.. ++-..+++. +|. .++++-||-+.|++
T Consensus 292 l~~a~~~~~l~ev~l~---nGa----vLkaktvIlstGAr 324 (520)
T COG3634 292 LEPAAVEGGLIEVELA---NGA----VLKARTVILATGAR 324 (520)
T ss_pred ceecCCCCccEEEEec---CCc----eeccceEEEecCcc
Confidence 6553 444566665 453 68899999999986
No 266
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.18 E-value=0.0004 Score=71.38 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=33.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+|.+|||||.+|+.+|..|+++|.+|+||||++..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI 36 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence 79999999999999999999999999999999865
No 267
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.17 E-value=0.002 Score=66.09 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=36.7
Q ss_pred ceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134 189 REILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (712)
Q Consensus 189 ~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V 239 (712)
++|..+++|+.+...++.|.-...-..+|+ ...+.++-||-|.|..+--
T Consensus 160 ~ki~~nskvv~il~n~gkVsgVeymd~sge--k~~~~~~~VVlatGGf~ys 208 (477)
T KOG2404|consen 160 VKILLNSKVVDILRNNGKVSGVEYMDASGE--KSKIIGDAVVLATGGFGYS 208 (477)
T ss_pred HhhhhcceeeeeecCCCeEEEEEEEcCCCC--ccceecCceEEecCCcCcC
Confidence 488999999999988887765443333443 4678999999999988743
No 268
>PLN02507 glutathione reductase
Probab=97.17 E-value=0.0025 Score=72.59 Aligned_cols=34 Identities=9% Similarity=0.325 Sum_probs=31.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
-+|+|||||++|+-+|..|++.|.+|+|+++.+.
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 237 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL 237 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 5799999999999999999999999999998753
No 269
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.15 E-value=0.00048 Score=77.32 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=34.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
....+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34579999999999999999999999999999997643
No 270
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.13 E-value=0.00044 Score=82.08 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=32.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
...+|+||||||+||++|..|++.|++|+|||+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 34789999999999999999999999999999875
No 271
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.11 E-value=0.0005 Score=82.64 Aligned_cols=36 Identities=31% Similarity=0.574 Sum_probs=33.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 468999999999999999999999999999998754
No 272
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.09 E-value=0.00063 Score=74.44 Aligned_cols=49 Identities=24% Similarity=0.496 Sum_probs=41.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhh
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l 98 (712)
+||+|||||++|+++|+.|+++|.+|+|+|+... +..++..++.+|..+
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~------~~~~s~gs~d~L~~~ 49 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS------ALHFSSGSLDLLSRL 49 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc------hhhhhhHHHhHhhhc
Confidence 5899999999999999999999999999998652 455677777777665
No 273
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.08 E-value=0.0061 Score=68.33 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=31.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 489999999999999999999999999999865
No 274
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.07 E-value=0.0057 Score=69.02 Aligned_cols=34 Identities=32% Similarity=0.678 Sum_probs=31.9
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 5899999999999999999999999999998764
No 275
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.07 E-value=0.00054 Score=80.63 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=33.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 469999999999999999999999999999998654
No 276
>PLN02546 glutathione reductase
Probab=97.06 E-value=0.00073 Score=77.54 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=31.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr 74 (712)
..+|||+||||||+|+.+|..++++|.+|.|||+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3458999999999999999999999999999996
No 277
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.04 E-value=0.00072 Score=72.08 Aligned_cols=67 Identities=22% Similarity=0.332 Sum_probs=48.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCE--EEEcCCCCCCC---------------CCce----eecCHhHHHHHHhhh
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKC--SVLEKNKAFST---------------HPQA----HFINNRYALVFRKLD 99 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v--~lvEr~~~~~~---------------~~ra----~~i~~rtmeilr~l~ 99 (712)
...++|+|||||++||++|++|++++-+| +|+|+.+..-- .||. .-...++++++..+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL- 87 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL- 87 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc-
Confidence 34589999999999999999999998766 45998875411 1111 11223678888998
Q ss_pred cHHHHHHhc
Q 005134 100 GLAEEIERS 108 (712)
Q Consensus 100 Gl~d~l~~~ 108 (712)
|+.+++...
T Consensus 88 Gl~~e~~~i 96 (491)
T KOG1276|consen 88 GLEDELQPI 96 (491)
T ss_pred Cccceeeec
Confidence 998777554
No 278
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.04 E-value=0.00049 Score=72.66 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=31.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFS 79 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~~ 79 (712)
|||||||+|++|+++|..|++.| .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 69999999999999999999997 7999999987643
No 279
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.03 E-value=0.00091 Score=77.96 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=32.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
.++||+||||||+|.++|+.++++|.+|+|||+.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4689999999999999999999999999999975
No 280
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.03 E-value=0.00073 Score=76.40 Aligned_cols=37 Identities=32% Similarity=0.527 Sum_probs=34.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
...+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3469999999999999999999999999999998754
No 281
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.02 E-value=0.005 Score=68.71 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=31.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
-+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 5899999999999999999999999999998764
No 282
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.01 E-value=0.0069 Score=68.11 Aligned_cols=34 Identities=18% Similarity=0.488 Sum_probs=31.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
-+|+|||||+.|+-+|..|++.|.+|+|||+.+.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 5899999999999999999999999999998653
No 283
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.00 E-value=0.00066 Score=83.15 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=33.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 468999999999999999999999999999998654
No 284
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.98 E-value=0.00089 Score=75.42 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=33.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
...+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 3478999999999999999999999999999998754
No 285
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.98 E-value=0.0029 Score=67.48 Aligned_cols=154 Identities=19% Similarity=0.279 Sum_probs=91.3
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcccccee
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~ 118 (712)
.+..+|++.||-||.-|++|++|..++ .+++.+||.+..+.||... +...+|++- =+ ..+.....|..... |
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGml-legstlQv~----Fl-kDLVTl~~PTs~yS-F 74 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGML-LEGSTLQVP----FL-KDLVTLVDPTSPYS-F 74 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcc-cCCcccccc----ch-hhhccccCCCCchH-H
Confidence 356799999999999999999999986 7899999999999998553 333333221 11 12222222221111 1
Q ss_pred EeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (712)
Q Consensus 119 ~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~ 198 (712)
..+....|+... | --....+++|.+....+.-.+..+. .++||.+|+
T Consensus 75 LNYL~~h~RLy~---------F----l~~e~f~i~R~Ey~dY~~Waa~~l~--------------------~~rfg~~V~ 121 (436)
T COG3486 75 LNYLHEHGRLYE---------F----LNYETFHIPRREYNDYCQWAASQLP--------------------SLRFGEEVT 121 (436)
T ss_pred HHHHHHcchHhh---------h----hhhhcccccHHHHHHHHHHHHhhCC--------------------ccccCCeec
Confidence 111111221111 0 0112457889999999988887763 789999999
Q ss_pred EEEE-cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 199 SVSA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 199 ~v~~-~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
.|.. +.+.+...+....++ ...+|+=||..-|..-
T Consensus 122 ~i~~~~~d~~~~~~~~t~~~----~~y~ar~lVlg~G~~P 157 (436)
T COG3486 122 DISSLDGDAVVRLFVVTANG----TVYRARNLVLGVGTQP 157 (436)
T ss_pred cccccCCcceeEEEEEcCCC----cEEEeeeEEEccCCCc
Confidence 7732 223333322222233 2567777776666543
No 286
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.96 E-value=0.012 Score=66.80 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=29.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr 74 (712)
-+|+|||||++|+-+|..|++.|.+|+|+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 4799999999999999999999999999986
No 287
>PLN02785 Protein HOTHEAD
Probab=96.95 E-value=0.0014 Score=75.84 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=35.4
Q ss_pred cCCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 37 IVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 37 ~~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
.+-...++|+||||||.+|+.+|..|++ +.+|+|||+...+
T Consensus 49 ~~~~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~~ 89 (587)
T PLN02785 49 SSGGDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGVP 89 (587)
T ss_pred cccccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCCC
Confidence 3444567999999999999999999999 6999999998753
No 288
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.94 E-value=0.0013 Score=67.74 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=38.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCce
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA 84 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra 84 (712)
+...||+|||||.+||.+|..|+.+|.+|+|+|+..+-+-.+.+
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 56799999999999999999999999999999998876554443
No 289
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.93 E-value=0.0051 Score=74.03 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=32.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFS 79 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~~ 79 (712)
+.+|+|||+|++|+.+|..|.++ +++++||++.+.+.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 45899999999999999999764 58999999988753
No 290
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.93 E-value=0.00087 Score=80.22 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=32.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
...+|+||||||+||++|..|+++|++|+|||+.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 346999999999999999999999999999998654
No 291
>PRK14694 putative mercuric reductase; Provisional
Probab=96.92 E-value=0.011 Score=66.99 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=29.9
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
-+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 58999999999999999999999999999863
No 292
>PRK02106 choline dehydrogenase; Validated
Probab=96.91 E-value=0.00096 Score=77.18 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=34.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKA 77 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar-~Gi~v~lvEr~~~ 77 (712)
..++||||||||++|+.+|..|++ .|++|+|||+.+.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 556999999999999999999999 7999999999964
No 293
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.90 E-value=0.007 Score=72.71 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=30.9
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 479999999999999999999999999999765
No 294
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.89 E-value=0.012 Score=63.44 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=81.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCC----ceeecCHhHHHHHHhhhcHHHHHHhcCCCccc
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAFSTHP----QAHFINNRYALVFRKLDGLAEEIERSQPPVDL 114 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~~~~~~----ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~ 114 (712)
.....|+|||||.++.-.++.|.+++- +|.++=|++...+.. --..++|.-++.|..+ - ++.+..-....
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l-~--~~~R~~~l~~~- 263 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSL-P--DEERRELLREQ- 263 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS----HHHHHHHHHHT-
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcC-C--HHHHHHHHHHh-
Confidence 355789999999999999999999875 799999988653211 1246788888888766 2 22222110000
Q ss_pred cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhH---HHHHHHHH-HHhcCceeeccCccccccccccccce
Q 005134 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK---LNKLLLKQ-LEKLNFKICTSEGTEGLHNHLLQGRE 190 (712)
Q Consensus 115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~---Le~~L~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (712)
+. ...-.++... |-+.|++. +... ..+.
T Consensus 264 -~~-----------------------------~ny~~i~~~~l~~iy~~lY~~~v~g~------------------~~~~ 295 (341)
T PF13434_consen 264 -RH-----------------------------TNYGGIDPDLLEAIYDRLYEQRVSGR------------------GRLR 295 (341)
T ss_dssp -GG-----------------------------GTSSEB-HHHHHHHHHHHHHHHHHT---------------------SE
T ss_pred -Hh-----------------------------hcCCCCCHHHHHHHHHHHHHHHhcCC------------------CCeE
Confidence 00 0001122222 22223332 2211 1248
Q ss_pred EEeCcEEEEEEEcCC-eEEEEEEeccCCceeeEEEEecEEEeccCC
Q 005134 191 ILMGHECVSVSATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGA 235 (712)
Q Consensus 191 v~~g~~v~~v~~~~~-~v~v~v~~~~~g~~~~~~i~ad~VVgADG~ 235 (712)
++-+++|++++.+++ ++.+++++...+ +..++.+|+||.|.|-
T Consensus 296 l~~~~~v~~~~~~~~~~~~l~~~~~~~~--~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 296 LLPNTEVTSAEQDGDGGVRLTLRHRQTG--EEETLEVDAVILATGY 339 (341)
T ss_dssp EETTEEEEEEEEES-SSEEEEEEETTT----EEEEEESEEEE---E
T ss_pred EeCCCEEEEEEECCCCEEEEEEEECCCC--CeEEEecCEEEEcCCc
Confidence 999999999999884 899999875555 3578999999999984
No 295
>PLN02529 lysine-specific histone demethylase 1
Probab=96.89 E-value=0.0012 Score=77.63 Aligned_cols=37 Identities=38% Similarity=0.484 Sum_probs=33.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
....+|+|||||++||++|..|+++|++|+|+|++..
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 3457999999999999999999999999999999864
No 296
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.88 E-value=0.0075 Score=72.64 Aligned_cols=109 Identities=16% Similarity=0.271 Sum_probs=74.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~ 123 (712)
-.|+|||||+.|+-+|..|++.|.+|+|+|+.+..-. +++ .
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~---------------~~l---d--------------------- 186 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA---------------EQL---D--------------------- 186 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh---------------hhc---C---------------------
Confidence 4799999999999999999999999999998653100 001 0
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (712)
Q Consensus 124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~ 203 (712)
......|.+.+++.|+ +++.+++++++..+
T Consensus 187 -------------------------------~~~~~~l~~~L~~~GV-------------------~v~~~~~v~~I~~~ 216 (847)
T PRK14989 187 -------------------------------QMGGEQLRRKIESMGV-------------------RVHTSKNTLEIVQE 216 (847)
T ss_pred -------------------------------HHHHHHHHHHHHHCCC-------------------EEEcCCeEEEEEec
Confidence 0122345566667776 99999999999765
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh--hcccCCC
Q 005134 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV--RKLVGID 246 (712)
Q Consensus 204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V--R~~lgi~ 246 (712)
++.....+.+. +|+ ++.+|+||.|-|.+... .+..|+.
T Consensus 217 ~~~~~~~v~~~-dG~----~i~~D~Vv~A~G~rPn~~L~~~~Gl~ 256 (847)
T PRK14989 217 GVEARKTMRFA-DGS----ELEVDFIVFSTGIRPQDKLATQCGLA 256 (847)
T ss_pred CCCceEEEEEC-CCC----EEEcCEEEECCCcccCchHHhhcCcc
Confidence 43222233322 453 68999999999987543 3444543
No 297
>PRK07846 mycothione reductase; Reviewed
Probab=96.86 E-value=0.008 Score=67.59 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=27.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
++||+||||||+|.++|.. ..|.+|.||||..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 3899999999999988865 4699999999853
No 298
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.86 E-value=0.012 Score=61.92 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=30.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.+|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 589999999999999999999999999999864
No 299
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.86 E-value=0.0079 Score=67.40 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=31.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 4799999999999999999999999999998763
No 300
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.85 E-value=0.0099 Score=66.69 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=30.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
-+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 579999999999999999999999999998765
No 301
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.85 E-value=0.0073 Score=68.44 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=29.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~---Gi~v~lvEr~~~ 77 (712)
.-+|+|||||++|+-+|..|+.. |.+|+|+|+.+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~ 224 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM 224 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc
Confidence 35799999999999999877654 999999998764
No 302
>PTZ00058 glutathione reductase; Provisional
Probab=96.85 E-value=0.008 Score=69.08 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=32.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.-+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 45799999999999999999999999999998753
No 303
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.83 E-value=0.0013 Score=77.40 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=33.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 468999999999999999999999999999998764
No 304
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0038 Score=60.95 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=31.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
....+|+|||.||++-++|++++|.-++.+|||-.
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~ 40 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGM 40 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence 34469999999999999999999999999999944
No 305
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.81 E-value=0.0089 Score=65.88 Aligned_cols=35 Identities=34% Similarity=0.565 Sum_probs=33.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
.+|+|||+|+.||.+|..|+++|++|+++|+.+.+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~ 171 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRL 171 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEccccc
Confidence 69999999999999999999999999999998764
No 306
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.79 E-value=0.014 Score=66.50 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=29.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr 74 (712)
-+|+|||||++|+-+|..|++.|.+|+|+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 3799999999999999999999999999986
No 307
>PRK14727 putative mercuric reductase; Provisional
Probab=96.79 E-value=0.014 Score=66.14 Aligned_cols=32 Identities=16% Similarity=0.440 Sum_probs=30.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
-+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 57999999999999999999999999999864
No 308
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.77 E-value=0.0014 Score=73.88 Aligned_cols=37 Identities=27% Similarity=0.581 Sum_probs=33.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
...+|+||||||+||++|..|+++|++|+|+|+.+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3468999999999999999999999999999998754
No 309
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.0054 Score=63.33 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=63.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCC---cee-ec--CHhHHHHHHhhhcHH-HHHHhcCCCc
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--THP---QAH-FI--NNRYALVFRKLDGLA-EEIERSQPPV 112 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~--~~~---ra~-~i--~~rtmeilr~l~Gl~-d~l~~~~~~~ 112 (712)
++.+|-|||||.+|.-+|..|+++||+|.|+|-++... .|- -+. ++ +-++..+.... ||. .+++..+.-.
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~nav-GlLk~EMR~lgSli 80 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAV-GLLKAEMRLLGSLI 80 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhh-HHHHHHHHHhhhHH
Confidence 45789999999999999999999999999999886431 111 111 11 12333344444 543 4444444221
Q ss_pred cccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCc
Q 005134 113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNF 170 (712)
Q Consensus 113 ~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~ 170 (712)
-.. .+. . ..+....+.++|+.|-+.+-+.++.++.
T Consensus 81 i~~----------------Ad~------~-~VPAGgALAVDR~~Fs~~vT~~l~~hpl 115 (439)
T COG1206 81 IEA----------------ADK------H-RVPAGGALAVDRDGFSQAVTEKLENHPL 115 (439)
T ss_pred hhh----------------hhh------c-cCCCCceeeecHhHHHHHHHHHHhcCCC
Confidence 000 000 0 0111224577899999999998888765
No 310
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.73 E-value=0.0065 Score=72.95 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 005134 46 VLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF 78 (712)
Q Consensus 46 VlIVGaGpaGL~~A~~Lar~---Gi~v~lvEr~~~~ 78 (712)
|+|||||++|+.+|..|.++ +++|+|||+.+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 68999999999999998775 5799999998865
No 311
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.73 E-value=0.0016 Score=72.44 Aligned_cols=36 Identities=36% Similarity=0.657 Sum_probs=34.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+.+|||+||||||+|.++|+.+++.|.+|.|+|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 457999999999999999999999999999999996
No 312
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.72 E-value=0.002 Score=69.95 Aligned_cols=37 Identities=35% Similarity=0.436 Sum_probs=33.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
...+|+|||||++|+.+|..|++.|++|+|||+.+.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4468999999999999999999999999999998754
No 313
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.68 E-value=0.013 Score=65.94 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=27.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
++||+||||||+|..+|. +.+|.+|.||||..
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence 589999999999999864 45799999999854
No 314
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.67 E-value=0.0017 Score=75.15 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=33.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..+|+||||||+||++|..|+++|++|+|+|+.+.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 468999999999999999999999999999998764
No 315
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.66 E-value=0.016 Score=66.38 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=30.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 589999999999999999999999999998654
No 316
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.66 E-value=0.0019 Score=75.78 Aligned_cols=36 Identities=28% Similarity=0.596 Sum_probs=33.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 578999999999999999999999999999999864
No 317
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.61 E-value=0.0017 Score=72.27 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=33.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
.+|.||||||+||++|..|+++|+.|+|+|+.+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 78999999999999999999999999999999865
No 318
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.61 E-value=0.018 Score=66.03 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=31.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
-+|+|||||.+|+-+|..|+..|.+|+|+++.+.
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 4899999999999999999999999999987654
No 319
>PRK13748 putative mercuric reductase; Provisional
Probab=96.60 E-value=0.02 Score=66.28 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=30.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
-+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 57999999999999999999999999999974
No 320
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.56 E-value=0.017 Score=67.42 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=31.8
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
-+|+|||||++|+-+|..|++.|.+|+|||+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 4799999999999999999999999999998765
No 321
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.50 E-value=0.0029 Score=71.76 Aligned_cols=36 Identities=31% Similarity=0.501 Sum_probs=33.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 369999999999999999999999999999998753
No 322
>PRK10262 thioredoxin reductase; Provisional
Probab=96.48 E-value=0.026 Score=60.42 Aligned_cols=34 Identities=12% Similarity=0.378 Sum_probs=31.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
-+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 5899999999999999999999999999998753
No 323
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.29 E-value=0.025 Score=63.09 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=26.7
Q ss_pred CEEEECCCHHHHHHHHHHHh--------------CCCCEEEEcCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTK--------------LGIKCSVLEKNK 76 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar--------------~Gi~v~lvEr~~ 76 (712)
.|+|||||++|+-+|..|+. .|.+|+|||+.+
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 220 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGS 220 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCC
Confidence 79999999999999999975 367777777654
No 324
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.0037 Score=65.78 Aligned_cols=49 Identities=29% Similarity=0.398 Sum_probs=38.3
Q ss_pred ccccccccCCCCccCCCCcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134 24 GYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (712)
Q Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~ 78 (712)
+.++++++|..+ ....|.|||+||+|+.+|..|-++ +++|.|+||.+.|
T Consensus 7 ~~~~~r~~s~qs------~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 7 SPSFCRHFSTQS------STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred hhHHHHHhhhcc------CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 344556555555 124899999999999999988774 7999999999876
No 325
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.02 Score=62.77 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=30.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~ 78 (712)
++|+|||+|++|+.+|..|.+. +. +.|||+++..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCc-eEEecccccc
Confidence 6899999999999999999876 33 9999999865
No 326
>PLN02546 glutathione reductase
Probab=96.24 E-value=0.04 Score=63.42 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 35899999999999999999999999999998654
No 327
>PRK13984 putative oxidoreductase; Provisional
Probab=96.18 E-value=0.0054 Score=71.70 Aligned_cols=37 Identities=32% Similarity=0.484 Sum_probs=33.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
...+|+|||+||+|+++|..|+++|++|+|||+.+.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3468999999999999999999999999999998754
No 328
>PLN02976 amine oxidase
Probab=96.15 E-value=0.0057 Score=75.11 Aligned_cols=37 Identities=32% Similarity=0.568 Sum_probs=33.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
...+|+||||||+|+++|+.|++.|++|+|||+++.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 3478999999999999999999999999999998654
No 329
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=0.015 Score=64.39 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=32.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
..+||+|||||-+|+-+|++.+|.|.+++|+--+..
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~d 38 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLD 38 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCC
Confidence 459999999999999999999999999999877654
No 330
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.01 E-value=0.041 Score=60.02 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=33.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS 79 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~~ 79 (712)
.+..|+|||||-+||.+|..|.++- +++++|||+....
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence 3478999999999999999999984 9999999998654
No 331
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=95.96 E-value=0.0084 Score=62.48 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=32.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
...+|.|||+|++||++|..|+++ .+|+|||.....
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rl 42 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRL 42 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccc
Confidence 457999999999999999999986 799999988754
No 332
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.93 E-value=0.006 Score=70.14 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=31.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA 77 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~ 77 (712)
||||||||.+|+.+|..|++.| ++|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999998 79999999864
No 333
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.92 E-value=0.031 Score=60.92 Aligned_cols=58 Identities=26% Similarity=0.424 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (712)
Q Consensus 157 Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (712)
+.+...+.+++.|+ +|+.++.|++++++ +| ++. +|. ..|.++.+|=|-|.+
T Consensus 211 l~~~a~~~L~~~GV-------------------~v~l~~~Vt~v~~~--~v--~~~---~g~---~~I~~~tvvWaaGv~ 261 (405)
T COG1252 211 LSKYAERALEKLGV-------------------EVLLGTPVTEVTPD--GV--TLK---DGE---EEIPADTVVWAAGVR 261 (405)
T ss_pred HHHHHHHHHHHCCC-------------------EEEcCCceEEECCC--cE--EEc---cCC---eeEecCEEEEcCCCc
Confidence 34445556677787 99999999998764 43 343 342 169999999999987
Q ss_pred -chhhccc
Q 005134 237 -STVRKLV 243 (712)
Q Consensus 237 -S~VR~~l 243 (712)
|++-+.|
T Consensus 262 a~~~~~~l 269 (405)
T COG1252 262 ASPLLKDL 269 (405)
T ss_pred CChhhhhc
Confidence 5565554
No 334
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=95.90 E-value=0.36 Score=53.55 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=30.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~ 78 (712)
+.++=|||+|+++|++|.+|-|- |-+++|+|+.+.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 35678999999999999999887 5699999998743
No 335
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.87 E-value=0.064 Score=58.87 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=44.8
Q ss_pred ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV 230 (712)
.++-..+...|.+.+.+ |+ +++++++|++++.+++++.++.. +|. +++||.||
T Consensus 131 ~idp~~~~~~l~~~~~~-G~-------------------~i~~~~~V~~i~~~~~~~~v~t~---~g~----~~~a~~vV 183 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RL-------------------TLHFNTEITSLERDGEGWQLLDA---NGE----VIAASVVV 183 (381)
T ss_pred ccChHHHHHHHHhccCC-Cc-------------------EEEeCCEEEEEEEcCCeEEEEeC---CCC----EEEcCEEE
Confidence 34445566666666666 65 99999999999988777655432 442 58999999
Q ss_pred eccCCCch
Q 005134 231 GTDGAGST 238 (712)
Q Consensus 231 gADG~~S~ 238 (712)
-|.|++|.
T Consensus 184 ~a~G~~~~ 191 (381)
T TIGR03197 184 LANGAQAG 191 (381)
T ss_pred EcCCcccc
Confidence 99999974
No 336
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.85 E-value=0.008 Score=68.99 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=34.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
..++|+||||+|.+|.++|..|+..|++|+|+|+...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 4569999999999999999999999999999999864
No 337
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=95.83 E-value=0.0072 Score=65.66 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=31.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF 78 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~ 78 (712)
...+|+|||||++||++|..|-.+| .+++|+|.....
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI 57 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI 57 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence 3458999999999999999999665 589999988754
No 338
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.78 E-value=0.077 Score=57.59 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=30.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~ 76 (712)
.+|+|||+|++|+-+|..|.+.|.+ |+|++++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 4799999999999999999999997 99998754
No 339
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.73 E-value=0.0079 Score=64.67 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=33.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
..++|++|||+|.-||++|..|+|.|.+|+++||+.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrh 47 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRH 47 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEee
Confidence 456999999999999999999999999999999993
No 340
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.31 E-value=0.06 Score=58.45 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=33.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
...+||+|||||=+|.-+|.+-+|.|-+.+++-.+-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld 62 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLD 62 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccc
Confidence 4579999999999999999999999999999877643
No 341
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.23 E-value=0.17 Score=57.10 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=30.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
.-+|+|||||.+|+-+|..|.+.|. +|+|++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3589999999999999999999998 899998764
No 342
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.22 E-value=0.17 Score=56.98 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=31.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
-+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 589999999999999999999999999999875
No 343
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.12 E-value=0.13 Score=59.42 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=31.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.-+|+|||||++|+-+|..|++.|.+|+|+++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 35899999999999999999999999999998753
No 344
>PRK12831 putative oxidoreductase; Provisional
Probab=94.99 E-value=0.18 Score=56.81 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=31.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
-+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 589999999999999999999999999999765
No 345
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=94.98 E-value=1.3 Score=48.81 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=34.0
Q ss_pred cceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134 188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (712)
Q Consensus 188 ~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S 237 (712)
+.+|+++++|++|+.+++++++++. .+|+ ++.||.||.|--...
T Consensus 211 g~~i~~~~~V~~i~~~~~~~~~~~~--~~g~----~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 211 GGEVRLGTRVRSIEANAGGIRALVL--SGGE----TLPADAVVLAVPPRH 254 (419)
T ss_pred CCEEEcCCeeeEEEEcCCcceEEEe--cCCc----cccCCEEEEcCCHHH
Confidence 4589999999999999888776654 2342 578999999866554
No 346
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.85 E-value=0.027 Score=66.45 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=33.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..|.|||.||+||++|-.|-|.|+.|+|+||....
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 68999999999999999999999999999998764
No 347
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=94.25 E-value=0.054 Score=55.56 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=30.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~G-------i~v~lvEr~~~~ 78 (712)
..+|+|||+|..||++|+.|.+.+ ++|.|++-+..+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e 45 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE 45 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence 478999999999999999998854 578898877655
No 348
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.08 E-value=0.053 Score=61.12 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=31.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+|+|||.|++|+++|..|.++|++|.++|++..+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999988754
No 349
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.07 E-value=0.062 Score=57.28 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=32.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+..++|+|||+|-.|.++|..|++.|.+|+++.|..
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 445689999999999999999999999999998863
No 350
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.06 E-value=0.057 Score=51.34 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=30.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+|.|+|||..|.++|..|+++|.+|.|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999875
No 351
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=94.05 E-value=0.013 Score=56.68 Aligned_cols=36 Identities=33% Similarity=0.500 Sum_probs=31.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~ 78 (712)
+.||+|||||-+||++|+.++++ .++|.|||..-.|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 46999999999999999999966 6899999987655
No 352
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.05 E-value=0.057 Score=54.60 Aligned_cols=35 Identities=23% Similarity=0.491 Sum_probs=32.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
++++|||+|..|.++|-.|.+.|.+|+++|+.+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence 46999999999999999999999999999998764
No 353
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=93.99 E-value=0.37 Score=57.95 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=30.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~ 76 (712)
-+|+|||||.+|+-+|..|.+.|.+ |+|+++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 5899999999999999999999997 99999875
No 354
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=93.83 E-value=0.4 Score=56.54 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=30.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
.-+|+|||||.+|+-+|..|.+.|. +|+|++++.
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3589999999999999999999997 599998765
No 355
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.72 E-value=0.55 Score=51.09 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=23.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhC----C--CCEEEE
Q 005134 44 VPVLIVGAGPVGLVLSILLTKL----G--IKCSVL 72 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~----G--i~v~lv 72 (712)
.+|+|||||++|+-+|..|+++ | .+|+|+
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li 180 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI 180 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 4899999999999999999853 4 255555
No 356
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=93.68 E-value=0.62 Score=52.69 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=29.3
Q ss_pred CcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC
Q 005134 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI 400 (712)
Q Consensus 359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~ 400 (712)
..||.+||+++. | .-...|+.++...|+.+...++|.
T Consensus 431 ~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 431 PKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999972 1 235779999999999998888764
No 357
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.61 E-value=0.05 Score=53.25 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=26.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
++|.|||.|-+||.+|..|++.|++|+-+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 468999999999999999999999999999765
No 358
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.51 E-value=0.075 Score=60.30 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=31.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.+|+|||+|++|+.+|..|+++|.+|+++|+++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999875
No 359
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=93.50 E-value=4.3 Score=43.18 Aligned_cols=62 Identities=26% Similarity=0.313 Sum_probs=48.6
Q ss_pred ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV 230 (712)
.++-..|...|.+.+.+.|+ +++++++|++++.++++++. +. .++| +++||.||
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~-------------------~~~~~~~v~~i~~~~~~~~~-v~-~~~g-----~~~a~~vV 186 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGV-------------------EIIEHTEVQHIEIRGEKVTA-IV-TPSG-----DVQADQVV 186 (337)
T ss_pred eEChHHHHHHHHHHHHHcCC-------------------EEEccceEEEEEeeCCEEEE-EE-cCCC-----EEECCEEE
Confidence 45567788888898888887 99999999999987776532 22 1233 58999999
Q ss_pred eccCCCch
Q 005134 231 GTDGAGST 238 (712)
Q Consensus 231 gADG~~S~ 238 (712)
.|.|++|.
T Consensus 187 ~a~G~~~~ 194 (337)
T TIGR02352 187 LAAGAWAG 194 (337)
T ss_pred EcCChhhh
Confidence 99999975
No 360
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.39 E-value=0.075 Score=51.77 Aligned_cols=32 Identities=22% Similarity=0.558 Sum_probs=28.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+|.|||||..|...|..++++|++|+++|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999865
No 361
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=93.36 E-value=0.2 Score=57.58 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=42.7
Q ss_pred ceeeeccCcCcCcccccccccCCCCc------cCC-CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 11 NCFSRIKTFPYPYGYTQCRALSDSKT------IVS-NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 11 ~~~~~~~~~~~p~~~~~~~~~s~~~~------~~~-~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
-+.+-|.+|-.|.+............ +.. ...+-..+|||||.-||-+|..|...|.++.|++=.+
T Consensus 106 ilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~ 178 (793)
T COG1251 106 IIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP 178 (793)
T ss_pred EEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc
Confidence 34555667777765544333222221 110 1123457999999999999999999999999987443
No 362
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=92.88 E-value=0.43 Score=52.35 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=32.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
...|++||+|-.|+-.|..|.-.+.+|++|++.+.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~ 248 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL 248 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc
Confidence 456999999999999999999999999999988754
No 363
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=92.86 E-value=0.12 Score=58.69 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=34.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF 78 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~ 78 (712)
..++|.||||||-+|..+|..|++. .++|+|+|+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4679999999999999999999987 7899999998766
No 364
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.63 E-value=0.15 Score=47.91 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 46 VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
|+|+|+|-.|+..|..|++.|.+|.++-|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998764
No 365
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.54 E-value=0.15 Score=57.42 Aligned_cols=36 Identities=39% Similarity=0.542 Sum_probs=32.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+..-+|+|+|+|.+|+.+|..|+++|.+|+++|+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 345679999999999999999999999999999875
No 366
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=92.36 E-value=0.57 Score=51.06 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccC
Q 005134 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDG 234 (712)
Q Consensus 155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG 234 (712)
..+..+|..++++.|+ +|+++++|.++ ++++..+.+. ++. .+++||.||-|-|
T Consensus 86 ~sVv~~L~~~l~~~gV-------------------~i~~~~~V~~i--~~~~~~v~~~---~~~---~~~~a~~vIlAtG 138 (376)
T TIGR03862 86 APLLRAWLKRLAEQGV-------------------QFHTRHRWIGW--QGGTLRFETP---DGQ---STIEADAVVLALG 138 (376)
T ss_pred HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEE--eCCcEEEEEC---CCc---eEEecCEEEEcCC
Confidence 4577888889999887 99999999999 2334444432 221 3589999999999
Q ss_pred CCc
Q 005134 235 AGS 237 (712)
Q Consensus 235 ~~S 237 (712)
..|
T Consensus 139 G~s 141 (376)
T TIGR03862 139 GAS 141 (376)
T ss_pred Ccc
Confidence 877
No 367
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.32 E-value=0.16 Score=53.96 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=31.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.++|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3579999999999999999999999999999864
No 368
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.12 E-value=0.15 Score=54.17 Aligned_cols=33 Identities=27% Similarity=0.543 Sum_probs=31.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+|.|||+|..|..+|..|+++|++|+++++.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999998864
No 369
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.01 E-value=0.18 Score=56.94 Aligned_cols=99 Identities=21% Similarity=0.330 Sum_probs=72.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~ 122 (712)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+ .+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~d-------------------- 215 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS-------------------FLD-------------------- 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC-------------------cCC--------------------
Confidence 35899999999999999999999999999998764310 000
Q ss_pred cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (712)
Q Consensus 123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~ 202 (712)
..+...|.+.+++.|+ +++.++++++++.
T Consensus 216 --------------------------------~~~~~~l~~~l~~~gI-------------------~v~~~~~v~~i~~ 244 (461)
T PRK05249 216 --------------------------------DEISDALSYHLRDSGV-------------------TIRHNEEVEKVEG 244 (461)
T ss_pred --------------------------------HHHHHHHHHHHHHcCC-------------------EEEECCEEEEEEE
Confidence 0112234455556666 9999999999987
Q ss_pred cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (712)
Q Consensus 203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (712)
+++++++++. +|+ ++.+|.||.|.|.+..
T Consensus 245 ~~~~~~v~~~---~g~----~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 245 GDDGVIVHLK---SGK----KIKADCLLYANGRTGN 273 (461)
T ss_pred eCCeEEEEEC---CCC----EEEeCEEEEeecCCcc
Confidence 7777665542 342 6899999999997654
No 370
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=91.84 E-value=0.2 Score=55.57 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=30.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~ 79 (712)
..++||||+|-|..-..+|.+|++.|.+|+.+||++...
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG 40 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence 467999999999999999999999999999999998653
No 371
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.53 E-value=0.21 Score=52.82 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=29.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr 74 (712)
++|+|+|+|..|.++|..|++.|.+|+++.|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999987
No 372
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.38 E-value=0.22 Score=52.38 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=31.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999998864
No 373
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.37 E-value=0.21 Score=52.86 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+|+|||+|-.|.++|..|++.|.+|+++.|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 59999999999999999999999999999854
No 374
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.02 E-value=0.32 Score=48.45 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=30.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
.-+|+|||||.+|+.-+..|.+.|.+|+|+...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 358999999999999999999999999999864
No 375
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.94 E-value=0.26 Score=51.80 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=31.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999997753
No 376
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.86 E-value=0.31 Score=46.24 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=30.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEc
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLE 73 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvE 73 (712)
...-+|+|||||.+|+.-+..|.+.|.+|+||.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 345689999999999999999999999999994
No 377
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=90.82 E-value=0.77 Score=47.76 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=32.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCCCCCCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNKAFSTHP 82 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi-~v~lvEr~~~~~~~~ 82 (712)
..+++|||||||-+|+++|.-+.+. |- +|-|+|-....--.|
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQP 80 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQP 80 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCc
Confidence 4679999999999999999999876 43 788888665443333
No 378
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=90.82 E-value=0.35 Score=44.72 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (712)
Q Consensus 46 VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~ 79 (712)
++|+|||+++.+++..++..|++|+|+|-+++.-
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~ 34 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERF 34 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcccc
Confidence 5899999999999999999999999999887643
No 379
>PRK06116 glutathione reductase; Validated
Probab=90.80 E-value=0.31 Score=54.78 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=32.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
.-+|+|||||++|+-+|..|++.|.+|+++++.+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 358999999999999999999999999999988754
No 380
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.75 E-value=0.28 Score=51.74 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=31.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5699999999999999999999999999998753
No 381
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.68 E-value=0.28 Score=52.11 Aligned_cols=33 Identities=39% Similarity=0.477 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~ 77 (712)
+|.|||+|.+|+++|+.|++.|+ ++.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999995 7999998753
No 382
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.65 E-value=0.33 Score=45.18 Aligned_cols=34 Identities=35% Similarity=0.664 Sum_probs=30.2
Q ss_pred cCEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134 44 VPVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGa-GpaGL~~A~~Lar~Gi--~v~lvEr~~~ 77 (712)
++|.|||+ |.+|.++|+.|...++ ++.|+|+...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 47999999 9999999999999987 6889998753
No 383
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.57 E-value=0.28 Score=52.73 Aligned_cols=34 Identities=26% Similarity=0.542 Sum_probs=31.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
++|.|||.|-+||++|..|++.|++|+-+|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4789999999999999999999999999998764
No 384
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.56 E-value=0.28 Score=43.63 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 46 VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
|+|||.|..|..++..|.+.+++++++|+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999864
No 385
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.42 E-value=0.28 Score=51.55 Aligned_cols=33 Identities=18% Similarity=0.470 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 589999999999999999999999999998764
No 386
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.28 E-value=0.33 Score=46.63 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=30.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
....|+|+|+|.+|+.+|..|...|++++++|.++
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 34789999999999999999999999999999764
No 387
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.27 E-value=1.9 Score=50.89 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=29.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~ 77 (712)
.+|+|||||.+|+-+|..+.++|. +|+++.+++.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 579999999999999999999997 6888887643
No 388
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.08 E-value=0.3 Score=51.44 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=31.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
-+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3599999999999999999999999999998753
No 389
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.03 E-value=0.32 Score=53.54 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=31.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.-.|+|+|+|+.|+.+|..|+..|.+|+++|+.+.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 35799999999999999999999999999998753
No 390
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.98 E-value=0.4 Score=50.86 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.9
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
++|.|||+|.+|+..|..|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 579999999999999999999887 899999843
No 391
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.95 E-value=0.33 Score=53.01 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=31.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
..+|+|+|+|.+|+.+|..|.+.|.+|+++++++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4579999999999999999999999999999864
No 392
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.91 E-value=0.29 Score=55.27 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=31.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.-+|+|+|+|++||.++..++..|.+|+++|+++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 56899999999999999999999999999998753
No 393
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.84 E-value=0.46 Score=50.66 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=33.0
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~ 77 (712)
+....+|.|||+|-+|.++|+.|...|+ ++.|+|.+..
T Consensus 3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 3445799999999999999999999998 7999998643
No 394
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.79 E-value=0.37 Score=50.51 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 699999999999999999999999999998764
No 395
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=89.79 E-value=1.3 Score=48.59 Aligned_cols=40 Identities=20% Similarity=0.430 Sum_probs=31.8
Q ss_pred eEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (712)
Q Consensus 190 ~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V 239 (712)
+++++++++.++..... +.+. +| +++..+++|-|-|. |+.
T Consensus 143 e~~~~t~v~~~D~~~K~--l~~~---~G----e~~kys~LilATGs-~~~ 182 (478)
T KOG1336|consen 143 ELILGTSVVKADLASKT--LVLG---NG----ETLKYSKLIIATGS-SAK 182 (478)
T ss_pred eEEEcceeEEeeccccE--EEeC---CC----ceeecceEEEeecC-ccc
Confidence 99999999999887765 3343 55 38999999999998 443
No 396
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=89.76 E-value=2 Score=49.15 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=56.1
Q ss_pred ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEE
Q 005134 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL 229 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~V 229 (712)
.++-..|...|.+.+.+.|+ +++++++|++++.+++.+. +++.+..+|+ ..+|+|++|
T Consensus 124 ~vdp~~l~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~--~~~i~a~~V 182 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGA-------------------RIFTYTKVTGLIREGGRVTGVKVEDHKTGE--EERIEAQVV 182 (516)
T ss_pred EECHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEECCEEEEEEEEEcCCCc--EEEEEcCEE
Confidence 45667788888888888887 9999999999998777654 4554333342 357999999
Q ss_pred EeccCCCch-hhcccCCC
Q 005134 230 IGTDGAGST-VRKLVGID 246 (712)
Q Consensus 230 VgADG~~S~-VR~~lgi~ 246 (712)
|-|-|++|. |.+.+|+.
T Consensus 183 VnAaG~wa~~l~~~~g~~ 200 (516)
T TIGR03377 183 INAAGIWAGRIAEYAGLD 200 (516)
T ss_pred EECCCcchHHHHHhcCCC
Confidence 999999975 55555653
No 397
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=89.76 E-value=2.6 Score=47.69 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=30.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~ 77 (712)
.-+|+|||+|.+|+-+|..+.+.|. +|+|++|++.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 3589999999999999999999996 6999998753
No 398
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.74 E-value=0.45 Score=49.25 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=32.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
.....|+|||+|-+|..+|..|++.|+ +++|+|...
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 345799999999999999999999997 899999665
No 399
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.68 E-value=0.33 Score=53.84 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=31.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.+|.|||.|-.|+.+|..|+++|++|+.+|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5699999999999999999999999999998764
No 400
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.64 E-value=0.48 Score=46.94 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=32.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
..+.+|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 345789999999999999999999999 599999873
No 401
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=0.34 Score=50.62 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=32.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.++|.+|||||-+||++|-..+..|-+|.++|--.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK 52 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc
Confidence 46999999999999999999999999999999643
No 402
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.47 E-value=0.42 Score=51.55 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=30.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
++|.|||+|-.|...|..|+++|++|++++|.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 46999999999999999999999999999974
No 403
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=89.39 E-value=0.48 Score=47.02 Aligned_cols=34 Identities=32% Similarity=0.338 Sum_probs=30.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr 74 (712)
.....|+|||||-+|...|..|.+.|.+++|+++
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 3456899999999999999999999999999975
No 404
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.30 E-value=0.24 Score=43.34 Aligned_cols=36 Identities=33% Similarity=0.420 Sum_probs=31.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
....+|||||||.+|..-+..|.+.|-+++|+.+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 345789999999999999999999999999998664
No 405
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.22 E-value=0.42 Score=44.00 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=30.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
+..|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999999 699999775
No 406
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=89.14 E-value=3 Score=51.26 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=30.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
-+|+|||||.+|+=+|..+.++|.+|+++.+++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 579999999999999999999999999998874
No 407
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.07 E-value=0.52 Score=50.26 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=31.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
..|.|||+|..|...|..++++|++|+++|+.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998764
No 408
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.87 E-value=0.58 Score=44.95 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=31.5
Q ss_pred CcccCEEEECCCH-HHHHHHHHHHhCCCCEEEEcCC
Q 005134 41 EAVVPVLIVGAGP-VGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 41 ~~~~~VlIVGaGp-aGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
....+|+|||+|- +|..+|..|.++|.+++++.|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 4568999999995 7999999999999999999986
No 409
>PLN02712 arogenate dehydrogenase
Probab=88.80 E-value=0.64 Score=54.67 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
.+.+|.|||.|..|-++|..|.++|++|+++++.
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3467999999999999999999999999999875
No 410
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=88.66 E-value=0.67 Score=49.70 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=33.0
Q ss_pred eEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCC--CchhhcccC
Q 005134 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA--GSTVRKLVG 244 (712)
Q Consensus 190 ~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~--~S~VR~~lg 244 (712)
+|+-+..|.++......+.+.+. +|. +++.|+||.|-|- ||-+.+.-|
T Consensus 409 ~V~pna~v~sv~~~~~nl~lkL~---dG~----~l~tD~vVvavG~ePN~ela~~sg 458 (659)
T KOG1346|consen 409 DVRPNAKVESVRKCCKNLVLKLS---DGS----ELRTDLVVVAVGEEPNSELAEASG 458 (659)
T ss_pred eeccchhhhhhhhhccceEEEec---CCC----eeeeeeEEEEecCCCchhhccccc
Confidence 77777777777766666656554 563 7899999999994 454444433
No 411
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=88.60 E-value=3.8 Score=50.30 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=30.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~-Gi-~v~lvEr~~~ 77 (712)
.-+|+|||||.+|+-+|..+.+. |. +|+|++|+..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~ 702 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 702 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence 35899999999999999998886 86 7999998763
No 412
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=88.60 E-value=2.3 Score=46.19 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=29.3
Q ss_pred ceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134 189 REILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (712)
Q Consensus 189 ~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~ 236 (712)
++++.++.|..++.. . +++... +|+ ..+|.+-++|.|-|..
T Consensus 288 I~~~~~t~Vk~V~~~--~--I~~~~~-~g~--~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 288 IDLDTGTMVKKVTEK--T--IHAKTK-DGE--IEEIPYGLLVWATGNG 328 (491)
T ss_pred ceeecccEEEeecCc--E--EEEEcC-CCc--eeeecceEEEecCCCC
Confidence 489999999888653 2 333322 454 3689999999999976
No 413
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.38 E-value=0.61 Score=52.33 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=31.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
...|+|+|+|.+|+++|.+|+++|.+|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35799999999999999999999999999997664
No 414
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.32 E-value=0.53 Score=50.43 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+|.|||+|-.|.++|..|++.|.+|.++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999864
No 415
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.25 E-value=0.79 Score=42.26 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=31.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~ 76 (712)
...+|+|||+|-+|-+.+..|..+|++ ++|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457899999999999999999999998 88888763
No 416
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.17 E-value=0.53 Score=51.02 Aligned_cols=32 Identities=38% Similarity=0.674 Sum_probs=27.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
.|+|+|+||.||.++..++..|. +++++|+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 69999999999999999999997 555567665
No 417
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.10 E-value=0.64 Score=50.02 Aligned_cols=36 Identities=33% Similarity=0.472 Sum_probs=32.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
.....|+|||+|-.|..+|..|++.|+ +++|+|+..
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 445789999999999999999999999 889999876
No 418
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.87 E-value=0.77 Score=49.07 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=32.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF 78 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~~ 78 (712)
.+|.|||+|-+|.++|..|+..|+ +++|+|..+..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 689999999999999999999997 99999987754
No 419
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.71 E-value=0.8 Score=45.45 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=32.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
..+.+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 456899999999999999999999999 899998764
No 420
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=87.66 E-value=0.48 Score=46.56 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=29.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
...+|+|||+|.++.-+|..|++.|-+|+++=|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 34789999999999999999999999999998876
No 421
>PRK04148 hypothetical protein; Provisional
Probab=87.59 E-value=0.44 Score=43.70 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=30.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
..|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999999999999999999997764
No 422
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.56 E-value=0.68 Score=49.17 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=30.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~ 77 (712)
.+|.|||+|.+|.++|..|+..|+ ++.++|...+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 589999999999999999999876 9999998554
No 423
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.50 E-value=0.68 Score=48.69 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=33.4
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
...++|.++||||-.|+++|...+.+|.++.|+|..
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 345799999999999999999999999999999976
No 424
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=87.49 E-value=0.53 Score=52.26 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+|.|||.|-.|+.+|..|++.|++|+++++++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999998764
No 425
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.33 E-value=0.78 Score=48.75 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=32.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
..++|.|||+|-.|.++|..|++.|++|.++.|...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 346799999999999999999999999999999764
No 426
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.29 E-value=0.74 Score=51.64 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=31.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
-.|+|+|+|.+|+++|..|++.|.+|++.|+...
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 4689999999999999999999999999997653
No 427
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.18 E-value=0.79 Score=48.75 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=30.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~ 76 (712)
+.+|.|||+|-+|.++|+.|...|+ +++|||.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4689999999999999999999987 688999865
No 428
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.82 E-value=0.84 Score=49.14 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=32.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
..+.+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 456899999999999999999999999 899999864
No 429
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.67 E-value=0.9 Score=46.39 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=31.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
....+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 445899999999999999999999999 677778664
No 430
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.66 E-value=0.81 Score=48.66 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=31.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.+|.|||+|..|..+|..|++.|++|+++++++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 4699999999999999999999999999997653
No 431
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.61 E-value=0.63 Score=48.72 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=29.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+|.|||.|..|.++|..|.++|++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999999754
No 432
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.57 E-value=0.73 Score=50.59 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=32.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.-.|+|+|.|++|..+|..|+..|.+|+++|+.+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 45899999999999999999999999999998764
No 433
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.56 E-value=14 Score=42.90 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCC-eEE-EEEEeccCCceeeEEEEecEEEec
Q 005134 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CIN-VIASFLKEGKCTERNIQCNILIGT 232 (712)
Q Consensus 155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~-~v~-v~v~~~~~g~~~~~~i~ad~VVgA 232 (712)
..+...|.+.+.+.|+ +++.++.++.+..+++ .|. |.+....+|+ .+.|.|+-||-|
T Consensus 126 ~~i~~~L~~~~~~~gi-------------------~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~--~~~i~AkaVVLA 184 (570)
T PRK05675 126 HALLHTLYQGNLKNGT-------------------TFLNEWYAVDLVKNQDGAVVGVIAICIETGE--TVYIKSKATVLA 184 (570)
T ss_pred HHHHHHHHHHHhccCC-------------------EEEECcEEEEEEEcCCCeEEEEEEEEcCCCc--EEEEecCeEEEC
Confidence 4577788888877776 9999999999987543 332 2222223453 568999999999
Q ss_pred cCCCchh
Q 005134 233 DGAGSTV 239 (712)
Q Consensus 233 DG~~S~V 239 (712)
.|..+.+
T Consensus 185 TGG~~~~ 191 (570)
T PRK05675 185 TGGAGRI 191 (570)
T ss_pred CCCcccc
Confidence 9988754
No 434
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.52 E-value=0.72 Score=52.42 Aligned_cols=32 Identities=34% Similarity=0.622 Sum_probs=29.9
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
..|+|+|.|++|++++.+|.++|.+|++.|++
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999965
No 435
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=86.41 E-value=0.85 Score=46.74 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=33.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
....++|+|||+.+..+|..++..|++|+|+|-++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 447899999999999999999999999999998766
No 436
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.22 E-value=0.75 Score=51.67 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=31.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+|+|||+|..|..+|..|.++|++++++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999999764
No 437
>PLN02602 lactate dehydrogenase
Probab=86.12 E-value=1.1 Score=48.27 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=30.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~ 76 (712)
.+|.|||+|-+|.++|+.|...|+ ++.|||.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 799999999999999999999987 689999865
No 438
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.11 E-value=0.76 Score=49.04 Aligned_cols=32 Identities=25% Similarity=0.542 Sum_probs=30.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+|.|||+|..|..+|..|++.|++|.+++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 439
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=86.06 E-value=0.77 Score=51.72 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=30.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~ 77 (712)
++|.|||.|-+|+.+|..|+++ |++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 4699999999999999999998 478999998764
No 440
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.01 E-value=0.75 Score=51.94 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=32.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
..+|+|+|+|++|+.++..+...|.+|+++|++..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 47899999999999999999999999999998753
No 441
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.87 E-value=1.2 Score=43.14 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~ 76 (712)
+|+|||+|-.|...|..|++.|+. ++|+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999995 99999875
No 442
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=85.84 E-value=0.78 Score=50.40 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
+|.|||.|-+|+.+|..|+. |++|+++|+.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 58999999999999999986 9999999998653
No 443
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.66 E-value=0.85 Score=48.93 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=30.8
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
++|.|||+|..|...|..|++.|++|++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 444
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=85.62 E-value=3.9 Score=45.17 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=51.3
Q ss_pred ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (712)
Q Consensus 151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV 230 (712)
.++-.+|.+.|.+.+++.|+ ++..+++|++++.++++++.... +++. +.+++||.+|
T Consensus 259 Sv~G~RL~~aL~~~~~~~Gg-------------------~il~g~~V~~i~~~~~~v~~V~t--~~g~--~~~l~AD~vV 315 (419)
T TIGR03378 259 SLLGIRLEEALKHRFEQLGG-------------------VMLPGDRVLRAEFEGNRVTRIHT--RNHR--DIPLRADHFV 315 (419)
T ss_pred CCcHHHHHHHHHHHHHHCCC-------------------EEEECcEEEEEEeeCCeEEEEEe--cCCc--cceEECCEEE
Confidence 45567888889999999997 89999999999988887765432 1221 2478999999
Q ss_pred eccCCC-ch
Q 005134 231 GTDGAG-ST 238 (712)
Q Consensus 231 gADG~~-S~ 238 (712)
-|.|++ |.
T Consensus 316 LAaGaw~S~ 324 (419)
T TIGR03378 316 LASGSFFSN 324 (419)
T ss_pred EccCCCcCH
Confidence 999999 75
No 445
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=85.47 E-value=1.1 Score=45.88 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=31.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
-.+.+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 345799999999999999999999999 788888764
No 446
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.45 E-value=1.3 Score=44.34 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=32.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~ 76 (712)
....+|+|||+|-.|...|..|++.|+. ++|+|...
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4468999999999999999999999995 88998764
No 447
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=85.30 E-value=0.53 Score=42.93 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=28.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
..+++|-|||+|-+|-++|..|.+.|+.|.-+..+
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 45689999999999999999999999998777644
No 448
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=85.28 E-value=0.9 Score=47.94 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=31.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3599999999999999999999999999998764
No 449
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.23 E-value=0.79 Score=53.05 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=32.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+-+|+|||+|..|-.+|..|.++|++++++|++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 46899999999999999999999999999999864
No 450
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=85.18 E-value=1 Score=47.85 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=29.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~ 77 (712)
+|.|||+|-+|.++|..|+..|+ ++.|+++...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 68999999999999999999995 7999999754
No 451
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.13 E-value=0.93 Score=47.88 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=31.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
..+|+|+|.|.+|..++..|++.|.+|++++|++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4789999999999999999999999999999885
No 452
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.94 E-value=1 Score=50.79 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=31.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.+|+|+|.|.+|+++|.+|.+.|++|.+.|+++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 4799999999999999999999999999998763
No 453
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=84.86 E-value=1 Score=49.77 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=32.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.-.|+|+|.|..|..+|..|+..|.+|+++|+.+.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 45799999999999999999999999999998764
No 454
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.64 E-value=1.5 Score=40.78 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=29.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~ 77 (712)
+|+|||+|-.|...|..|.+.|+ +++|+|...-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 58999999999999999999999 6999987753
No 455
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.59 E-value=1.3 Score=44.75 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=31.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
..+.+|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 446799999999999999999999999 777888664
No 456
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=84.50 E-value=6.8 Score=48.62 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=28.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN 75 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~ 75 (712)
.-+|+|||||.+|+=+|..+.+.|.+ |+++.|+
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 35899999999999999999999985 6666654
No 457
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.13 E-value=1.5 Score=44.52 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=31.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
.+..|+|||.|-+|..+|..|++.|+ +.+|+|...
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45789999999999999999999999 888888665
No 458
>PRK08328 hypothetical protein; Provisional
Probab=84.09 E-value=1.5 Score=44.54 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=31.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
..+.+|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 345789999999999999999999999 677887654
No 459
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.07 E-value=1.1 Score=47.59 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=29.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~ 76 (712)
.+|.|||+|..|.++|..|.+.|+ +|.++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 579999999999999999999995 788898764
No 460
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=83.88 E-value=1.3 Score=44.63 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=29.0
Q ss_pred CEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 45 PVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 45 ~VlIVG-aGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+|.||| +|..|.++|..|++.|.+|+++.|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 599997 79999999999999999999998754
No 461
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=83.81 E-value=1.2 Score=47.24 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 46 VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 46 VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
|.|||+|-+|..+|..|+.+|+ +++++|..+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999987 999999874
No 462
>PRK05866 short chain dehydrogenase; Provisional
Probab=83.79 E-value=2 Score=45.16 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=30.9
Q ss_pred CcccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 41 EAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+....|+|.|| |-.|..+|..|+++|.+|+++.|+.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 34456999997 8999999999999999999998763
No 463
>PTZ00117 malate dehydrogenase; Provisional
Probab=83.57 E-value=1.5 Score=46.94 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=31.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA 77 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~ 77 (712)
.+.+|.|||||-+|.++|+.|+..| .++.|+|.+..
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 3468999999999999999999999 48899998764
No 464
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=83.49 E-value=1.6 Score=44.13 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=31.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIK---CSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~---v~lvEr~~ 76 (712)
...+|+|+|||-+|...|..|.+.|++ +.|++|+.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 456899999999999999999999996 99999984
No 465
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=83.47 E-value=1.4 Score=46.24 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=30.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
.+|+|+|+|-+|.+.|..|++.|+ +++|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 579999999999999999999999 799999874
No 466
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.41 E-value=1.5 Score=46.57 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=29.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~ 77 (712)
+|.|||+|-+|.++|+.|...|+ +.+|||.+..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~ 35 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG 35 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 58999999999999999999988 6999997643
No 467
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=83.32 E-value=1.2 Score=50.66 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=31.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
..|.|||+|.-|...|..|+++|++|+++|+.++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998864
No 468
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.27 E-value=1.7 Score=43.00 Aligned_cols=34 Identities=32% Similarity=0.320 Sum_probs=31.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
....|+|+|.|-.|..+|..|.+.|.+|+++|++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3467999999999999999999999999999866
No 469
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=83.22 E-value=1.7 Score=42.71 Aligned_cols=34 Identities=24% Similarity=0.549 Sum_probs=30.4
Q ss_pred cccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCC
Q 005134 42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKN 75 (712)
Q Consensus 42 ~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~ 75 (712)
...+|+|+|| |.+|..+|..|+++|.+++++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3468999997 999999999999999999999876
No 470
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=83.11 E-value=1.3 Score=50.29 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=31.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.+|.|||+|..|...|..|+++|++|+|+++++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998654
No 471
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=82.99 E-value=1.2 Score=49.30 Aligned_cols=36 Identities=33% Similarity=0.450 Sum_probs=33.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~ 78 (712)
..+|+|+|-|-+|+++|.+|.++|.+|+++|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 578999999999999999999999999999988866
No 472
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.71 E-value=1.6 Score=47.60 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=31.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~ 77 (712)
.+|||+|+|-+|.+.|..|+++| .+|+|.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 57999999999999999999999 89999999853
No 473
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.71 E-value=1.7 Score=42.91 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=31.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~ 76 (712)
..+.+|+|||+|-.|...|..|++.|+. ++|+|...
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 3458999999999999999999999994 88898764
No 474
>PRK13984 putative oxidoreductase; Provisional
Probab=82.51 E-value=13 Score=43.62 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=28.1
Q ss_pred CcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcC
Q 005134 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399 (712)
Q Consensus 359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g 399 (712)
.+||.+||+++. ..+-.|+.++...|..|...|.+
T Consensus 569 ~gVfAaGD~~~~------~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 569 PWLFAGGDIVHG------PDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred CCEEEecCcCCc------hHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999863 23677999999999988877654
No 475
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=82.41 E-value=1.4 Score=46.82 Aligned_cols=33 Identities=33% Similarity=0.645 Sum_probs=28.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
++|+|+|+|-.|...|..|++.|.+|+++=|.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 479999999999999999999997777766554
No 476
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=82.40 E-value=1.9 Score=42.66 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=31.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
..+..|+|||+|..|...|..|++.|+ +++|+|...
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 446899999999999999999999999 588888664
No 477
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.11 E-value=1.5 Score=51.16 Aligned_cols=34 Identities=35% Similarity=0.506 Sum_probs=32.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+.+|+|+|.|..|-.+|..|.++|++++++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI 433 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence 4689999999999999999999999999999876
No 478
>PRK08223 hypothetical protein; Validated
Probab=82.06 E-value=2 Score=44.91 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=31.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
..+..|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 446899999999999999999999999 677788664
No 479
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.99 E-value=1.2 Score=50.53 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=31.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.+|.|||+|.-|...|..|+++|++|+++|+.++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4599999999999999999999999999998865
No 480
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.96 E-value=1.5 Score=49.54 Aligned_cols=34 Identities=18% Similarity=-0.069 Sum_probs=31.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.+|+|+|.|-+|.++|.+|.++|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 4799999999999999999999999999997654
No 481
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=81.95 E-value=2 Score=45.77 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=36.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~ 81 (712)
..+||+|+|-|+.=..++.+|++.|-+|+.|||++.....
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGST 44 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcc
Confidence 3699999999999999999999999999999999876433
No 482
>PLN02494 adenosylhomocysteinase
Probab=81.57 E-value=1.7 Score=48.34 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=32.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.-.|+|+|.|+.|..+|..|...|.+|+++|+.+.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 36799999999999999999999999999998764
No 483
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.42 E-value=1.6 Score=48.59 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=31.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
.+|+|||-|-+|+++|.+|.++|.+|.++|++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4699999999999999999999999999997653
No 484
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.39 E-value=1.8 Score=49.30 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=30.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.+|+|+|.|-+|+++|.+|.++|++|.+.|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 469999999999999999999999999999765
No 485
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.20 E-value=1.8 Score=48.66 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=31.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+--|+|||.|-+|+++|.+|.++|++|.+.|...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 4569999999999999999999999999999765
No 486
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.00 E-value=1.6 Score=48.95 Aligned_cols=35 Identities=37% Similarity=0.626 Sum_probs=32.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
..+|+|+|+|..|..+|..|.++|++++++|+++.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 46799999999999999999999999999998864
No 487
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.82 E-value=1.8 Score=49.03 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=30.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
.+|+|+|.|-+|+++|.+|.+.|.+|.+.|+..
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 469999999999999999999999999999753
No 488
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.81 E-value=1.9 Score=48.45 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=29.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
..+|+|+|.|.+|.++|.+|.+ |.+|++.|.++
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~ 38 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK 38 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence 3579999999999999999995 99999999554
No 489
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=80.78 E-value=2.1 Score=46.67 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=32.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
..+..|+|||+|..|...|..|++.|+ +++|+|...
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 345799999999999999999999999 888888764
No 490
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=80.72 E-value=1.9 Score=45.23 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=31.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
...|+|+|.|-+|.++|..|+..|.+|++++|..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999875
No 491
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.56 E-value=2.1 Score=44.94 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=28.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCC
Q 005134 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKN 75 (712)
Q Consensus 43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~ 75 (712)
-.+|||.||||.||.+-+.++-.|. +|++.|-.
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~ 203 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV 203 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC
Confidence 3689999999999999999999997 78887743
No 492
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.51 E-value=2.1 Score=44.62 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=27.9
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN 75 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~ 75 (712)
-.|+|.|+|++|++++..++..|.+ ++++++.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~ 154 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPS 154 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4799999999999999999999997 7777654
No 493
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=80.29 E-value=2.5 Score=46.18 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=33.5
Q ss_pred CCCcccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 39 SNEAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 39 ~~~~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+...+++|+|.|| |.+|..++..|.++|++|+.+.|..
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 3345678999999 9999999999999999999999864
No 494
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=80.28 E-value=23 Score=38.81 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=34.8
Q ss_pred eEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (712)
Q Consensus 190 ~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~ 238 (712)
.-.+..+++.++.+...|.+.....+ +...+..|.+||||.|-|+...
T Consensus 124 ~~y~eAec~~iDp~~k~V~~~s~t~~-~~~~e~~i~YDyLViA~GA~~~ 171 (491)
T KOG2495|consen 124 VKYLEAECTKIDPDNKKVHCRSLTAD-SSDKEFVIGYDYLVIAVGAEPN 171 (491)
T ss_pred ceEEecccEeecccccEEEEeeeccC-CCcceeeecccEEEEeccCCCC
Confidence 34566778888888877766655433 3235678999999999999875
No 495
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=80.03 E-value=1.9 Score=40.83 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=27.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
..|+|+|-|.+|-.+|..|+..|.+|+|+|..|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 469999999999999999999999999999876
No 496
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=80.01 E-value=2.4 Score=42.64 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=31.9
Q ss_pred CcccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134 41 EAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA 77 (712)
Q Consensus 41 ~~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~~ 77 (712)
+....|||.|| |..|..++..|.++|.+|+++.|++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~ 40 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE 40 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 33457999997 89999999999999999999998753
No 497
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=79.89 E-value=1.9 Score=45.28 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=29.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
+|.|||.|..|..+|..|++.|++|++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999999875
No 498
>PRK07326 short chain dehydrogenase; Provisional
Probab=79.82 E-value=2.3 Score=42.71 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=30.6
Q ss_pred cccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
....|+|+|| |..|..+|..|.++|.+|+++.|++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 3467999986 9999999999999999999998764
No 499
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.68 E-value=2.4 Score=42.98 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=30.2
Q ss_pred ccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134 43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK 76 (712)
Q Consensus 43 ~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~ 76 (712)
...++|+|| |..|..+|..|.++|.+|+++.|..
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 356999998 9999999999999999999998653
No 500
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=79.57 E-value=2.3 Score=47.40 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=30.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (712)
Q Consensus 42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~ 76 (712)
....|+|||+|..|..++..|...|+ ++++++|..
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 34689999999999999999999998 788888764
Done!