Your job contains 1 sequence.
>005135
MPALGCCVDAAVAPPAYANSPLGSLPVPPPLPLSFISGAPPPTPMSPTSASAGSVAADVD
SSHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKS
VGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDI
VKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVV
IVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVV
KKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLG
IDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI
FEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHV
NLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLH
EMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGP
SCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDDYDHGMANNSALASSLAQ
YFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDAVVDSSPNEDEQWSYCYA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005135
(712 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2139629 - symbol:ADC2 "arginine decarboxylase ... 1455 1.2e-226 3
TAIR|locus:2045111 - symbol:ADC1 "arginine decarboxylase ... 1438 3.6e-222 2
UNIPROTKB|Q9SNN0 - symbol:ADC1 "Arginine decarboxylase 1"... 1293 2.6e-195 2
TIGR_CMR|SPO_0602 - symbol:SPO_0602 "arginine decarboxyla... 611 1.9e-91 2
TIGR_CMR|GSU_2537 - symbol:GSU_2537 "biosynthetic arginin... 605 2.4e-87 2
UNIPROTKB|P21170 - symbol:speA "SpeA" species:83333 "Esch... 618 1.7e-86 2
TIGR_CMR|SO_1870 - symbol:SO_1870 "biosynthetic arginine ... 599 2.5e-83 2
UNIPROTKB|Q9KLD1 - symbol:speA "Biosynthetic arginine dec... 600 1.1e-80 2
TIGR_CMR|VC_A0815 - symbol:VC_A0815 "biosynthetic arginin... 600 1.1e-80 2
TIGR_CMR|CJE_0855 - symbol:CJE_0855 "arginine decarboxyla... 474 2.3e-66 2
TIGR_CMR|BA_1438 - symbol:BA_1438 "diaminopimelate decarb... 121 0.00040 1
>TAIR|locus:2139629 [details] [associations]
symbol:ADC2 "arginine decarboxylase 2" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006527
"arginine catabolic process" evidence=IEA] [GO:0008295 "spermidine
biosynthetic process" evidence=IEA] [GO:0008792 "arginine
decarboxylase activity" evidence=IEA;IMP] [GO:0006596 "polyamine
biosynthetic process" evidence=IMP] [GO:0006970 "response to
osmotic stress" evidence=IMP] [GO:0009611 "response to wounding"
evidence=IEP;RCA] [GO:0009737 "response to abscisic acid stimulus"
evidence=IEP] [GO:0009753 "response to jasmonic acid stimulus"
evidence=IEP;RCA] [GO:0009651 "response to salt stress"
evidence=IMP] [GO:0006979 "response to oxidative stress"
evidence=IEP;RCA] [GO:0009446 "putrescine biosynthetic process"
evidence=IMP] [GO:0048316 "seed development" evidence=IGI]
[GO:0009409 "response to cold" evidence=IMP] [GO:0080167 "response
to karrikin" evidence=IEP] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0007165 "signal transduction"
evidence=RCA] [GO:0009414 "response to water deprivation"
evidence=RCA] [GO:0009620 "response to fungus" evidence=RCA]
[GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA]
[GO:0009723 "response to ethylene stimulus" evidence=RCA]
[GO:0009733 "response to auxin stimulus" evidence=RCA] [GO:0009738
"abscisic acid mediated signaling pathway" evidence=RCA]
[GO:0009863 "salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010363 "regulation of plant-type
hypersensitive response" evidence=RCA] [GO:0042538 "hyperosmotic
salinity response" evidence=RCA] InterPro:IPR000183
InterPro:IPR002985 InterPro:IPR022643 InterPro:IPR022644
Pfam:PF00278 Pfam:PF02784 PIRSF:PIRSF001336 PRINTS:PR01179
PRINTS:PR01180 Prosite:PS00879 Prosite:PS00878 GO:GO:0009737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009753 GO:GO:0006979
GO:GO:0009611 GO:GO:0009651 GO:GO:0009409 GO:GO:0080167
GO:GO:0048316 KO:K01583 GO:GO:0008792 InterPro:IPR022657
InterPro:IPR022653 EMBL:AL161586 GO:GO:0006527 GO:GO:0009446
GO:GO:0008295 EMBL:AL023094 UniGene:At.43941 eggNOG:COG1166
HOGENOM:HOG000029191 ProtClustDB:PLN02439 UniPathway:UPA00186
PANTHER:PTHR11482:SF3 TIGRFAMs:TIGR01273 EMBL:AF009647
EMBL:AY039581 EMBL:AY093982 IPI:IPI00547586 PIR:T05291
RefSeq:NP_195197.1 RefSeq:NP_974684.1 UniGene:At.2313
ProteinModelPortal:O23141 SMR:O23141 IntAct:O23141 STRING:O23141
PaxDb:O23141 PRIDE:O23141 EnsemblPlants:AT4G34710.1
EnsemblPlants:AT4G34710.2 GeneID:829623 KEGG:ath:AT4G34710
TAIR:At4g34710 InParanoid:O23141 OMA:HSFAVTR PhylomeDB:O23141
Genevestigator:O23141 GermOnline:AT4G34710 Uniprot:O23141
Length = 711
Score = 1455 (517.2 bits), Expect = 1.2e-226, Sum P(3) = 1.2e-226
Identities = 283/394 (71%), Positives = 328/394 (83%)
Query: 72 LYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLI 131
LY+ID WGAPYF N SGN+SVRP+G TL HQ+IDLLKIVKKV+ PKS GGLGLQLPLI
Sbjct: 50 LYRIDGWGAPYFIANSSGNISVRPHGSETLPHQDIDLLKIVKKVTGPKSSGGLGLQLPLI 109
Query: 132 VRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGL 191
VR PDVL++RLE L SAF++AI++QGY++ YQGV+PVKCNQDRFVVEDIVKFGS FRFGL
Sbjct: 110 VRFPDVLKNRLECLQSAFDYAIKSQGYDSHYQGVYPVKCNQDRFVVEDIVKFGSSFRFGL 169
Query: 192 EAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDL 251
EAGSKPE+LLAMSCLCKGSP+A LVCNGFKDA YI+LALL RKL LN VIVLEQEEE+DL
Sbjct: 170 EAGSKPEILLAMSCLCKGSPDAFLVCNGFKDAEYISLALLGRKLALNTVIVLEQEEELDL 229
Query: 252 VIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDC 311
VIE+S+K+NVRPVIG RAKLRTKHSGHFGSTSGEKGKFGLTTTQI+RVV+KL + MLDC
Sbjct: 230 VIELSQKMNVRPVIGLRAKLRTKHSGHFGSTSGEKGKFGLTTTQIVRVVRKLRQSGMLDC 289
Query: 312 FQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSADS 371
QLLHFHIGSQIPST+LL+DGV EAAQ+YCELVRLGA+M+V SKS +S
Sbjct: 290 LQLLHFHIGSQIPSTSLLSDGVAEAAQLYCELVRLGAHMKVIDIGGGLGIDYDGSKSGES 349
Query: 372 DLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEXXXXXXXXX 431
DLSVAY+LEEYA AVV ++R VCDR +VKHPV+CSESGRAIVSHHS+LIFE
Sbjct: 350 DLSVAYSLEEYAEAVVASVRVVCDRSSVKHPVICSESGRAIVSHHSVLIFEAVSADKPMV 409
Query: 432 XXXXMSPLGLQYLVEGLTEDARSDYTKMTTAALR 465
+P +Q+L+EG E+AR++Y + A +R
Sbjct: 410 HQA--TPGDIQFLLEG-NEEARANYEDLYAAVMR 440
Score = 713 (256.0 bits), Expect = 1.2e-226, Sum P(3) = 1.2e-226
Identities = 146/232 (62%), Positives = 164/232 (70%)
Query: 469 IGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKID 528
IGASDPV TY++NLS+FTSIPD W I QLFPIVPIH LD+RPG RG+LSDLTCDSDGKI+
Sbjct: 485 IGASDPVHTYNINLSVFTSIPDLWGIDQLFPIVPIHKLDQRPGARGILSDLTCDSDGKIN 544
Query: 529 KFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGP 588
KFIGG +SLPLHE+ G G G Y+LGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGP
Sbjct: 545 KFIGGESSLPLHELDKNGSG--GRYFLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGP 602
Query: 589 HSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXM 648
HSFAVTRA+PG S DVLR MQHEPELMF+TLKHRAEE H
Sbjct: 603 HSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHRAEEMM---HTKGGSEGENEEEEED- 658
Query: 649 XXXXXXXXXXXQYFHSMPYLVV----PSSCSLTAINNGGGLYYCNGEDYDAV 696
+ FH+MPYL PS+ AI+N G YYC+ + YD +
Sbjct: 659 DEFNNVAASLDRSFHNMPYLATEQASPSNSLSAAISNLG-FYYCDEDVYDYI 709
Score = 59 (25.8 bits), Expect = 1.2e-226, Sum P(3) = 1.2e-226
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 1 MPALGCCVDAAVAPPAYA 18
MPAL C VD + PPAYA
Sbjct: 1 MPALAC-VDTSFVPPAYA 17
>TAIR|locus:2045111 [details] [associations]
symbol:ADC1 "arginine decarboxylase 1" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0006527 "arginine catabolic process"
evidence=IEA] [GO:0008295 "spermidine biosynthetic process"
evidence=IEA] [GO:0008792 "arginine decarboxylase activity"
evidence=IEA;NAS] [GO:0009651 "response to salt stress"
evidence=IMP] [GO:0006979 "response to oxidative stress"
evidence=IEP] [GO:0048316 "seed development" evidence=IGI]
[GO:0009409 "response to cold" evidence=IMP] InterPro:IPR000183
InterPro:IPR002985 InterPro:IPR009006 InterPro:IPR022643
InterPro:IPR022644 Pfam:PF00278 Pfam:PF02784 PIRSF:PIRSF001336
PRINTS:PR01179 PRINTS:PR01180 Prosite:PS00879 Prosite:PS00878
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006979 GO:GO:0009651
GO:GO:0009409 GO:GO:0048316 KO:K01583 GO:GO:0008792
Gene3D:2.40.37.10 InterPro:IPR022657 InterPro:IPR022653
BRENDA:4.1.1.19 GO:GO:0006527 GO:GO:0009446 GO:GO:0008295
EMBL:AC007195 EMBL:U52851 EMBL:BT008636 IPI:IPI00543375 PIR:A84541
PIR:S71239 RefSeq:NP_179243.1 UniGene:At.10173
ProteinModelPortal:Q9SI64 SMR:Q9SI64 STRING:Q9SI64 PRIDE:Q9SI64
EnsemblPlants:AT2G16500.1 GeneID:816149 KEGG:ath:AT2G16500
TAIR:At2g16500 eggNOG:COG1166 HOGENOM:HOG000029191
InParanoid:Q9SI64 OMA:YLSMETS PhylomeDB:Q9SI64 ProtClustDB:PLN02439
UniPathway:UPA00186 Genevestigator:Q9SI64 GermOnline:AT2G16500
PANTHER:PTHR11482:SF3 TIGRFAMs:TIGR01273 Uniprot:Q9SI64
Length = 702
Score = 1438 (511.3 bits), Expect = 3.6e-222, Sum P(2) = 3.6e-222
Identities = 276/394 (70%), Positives = 327/394 (82%)
Query: 72 LYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLI 131
LY+ID WGAPYFA N SGN+SVRP+G TL HQ+IDL+K+VKKV+DP GLGLQLPLI
Sbjct: 42 LYRIDGWGAPYFAANSSGNISVRPHGSNTLPHQDIDLMKVVKKVTDPS---GLGLQLPLI 98
Query: 132 VRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGL 191
VR PDVL++RLE L SAF++AIQ+QGY++ YQGV+PVKCNQDRF++EDIV+FGS FRFGL
Sbjct: 99 VRFPDVLKNRLECLQSAFDYAIQSQGYDSHYQGVYPVKCNQDRFIIEDIVEFGSGFRFGL 158
Query: 192 EAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDL 251
EAGSKPE+LLAMSCLCKG+PEA LVCNGFKD+ YI+LAL RKL+LN VIVLEQEEE+DL
Sbjct: 159 EAGSKPEILLAMSCLCKGNPEAFLVCNGFKDSEYISLALFGRKLELNTVIVLEQEEELDL 218
Query: 252 VIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDC 311
VI++S+K+NVRPVIG RAKLRTKHSGHFGSTSGEKGKFGLTT QILRVV+KL MLDC
Sbjct: 219 VIDLSQKMNVRPVIGLRAKLRTKHSGHFGSTSGEKGKFGLTTVQILRVVRKLSQVGMLDC 278
Query: 312 FQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSADS 371
QLLHFHIGSQIPSTALL+DGV EAAQ+YCELVRLGA+M+V SKS +S
Sbjct: 279 LQLLHFHIGSQIPSTALLSDGVAEAAQLYCELVRLGAHMKVIDIGGGLGIDYDGSKSGES 338
Query: 372 DLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEXXXXXXXXX 431
DLSVAY+LEEYA+AVV ++R+VCD+K+VKHPV+CSESGRAIVSHHS+LIFE
Sbjct: 339 DLSVAYSLEEYAAAVVASVRFVCDQKSVKHPVICSESGRAIVSHHSVLIFEAVSAGQQHE 398
Query: 432 XXXXMSPLGLQYLVEGLTEDARSDYTKMTTAALR 465
+P Q+++EG +E+ R DY + AA+R
Sbjct: 399 -----TPTDHQFMLEGYSEEVRGDYENLYGAAMR 427
Score = 730 (262.0 bits), Expect = 3.6e-222, Sum P(2) = 3.6e-222
Identities = 151/242 (62%), Positives = 167/242 (69%)
Query: 469 IGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKID 528
IGASDPV TYHVNLS+FTSIPD+W I QLFPIVPIH LD+RP RG+LSDLTCDSDGKI+
Sbjct: 472 IGASDPVLTYHVNLSVFTSIPDFWGIDQLFPIVPIHKLDQRPAARGILSDLTCDSDGKIN 531
Query: 529 KFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGP 588
KFIGG +SLPLHEM GC G YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGP
Sbjct: 532 KFIGGESSLPLHEMDNNGCSG-GRYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGP 590
Query: 589 HSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXM 648
H FAVTRA+ G S DVLR MQHEPELMF+TLKHRAEE +
Sbjct: 591 HGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHRAEEPRNNNNKACGDKGNDKLVVASC 650
Query: 649 XXXXXXXXXXXQYFHSMPYLVVPSSCS-LTAINNGGGLYYCNGEDYDAVVDSSPNEDEQW 707
F++MPYL + +S + LTA N G+YYC D A +DE W
Sbjct: 651 LAKS---------FNNMPYLSMETSTNALTAAVNNLGVYYC---DEAAAGGGGKGKDENW 698
Query: 708 SY 709
SY
Sbjct: 699 SY 700
>UNIPROTKB|Q9SNN0 [details] [associations]
symbol:ADC1 "Arginine decarboxylase 1" species:39947 "Oryza
sativa Japonica Group" [GO:0009409 "response to cold" evidence=IEP]
InterPro:IPR000183 InterPro:IPR002985 InterPro:IPR009006
InterPro:IPR022643 InterPro:IPR022644 Pfam:PF00278 Pfam:PF02784
PIRSF:PIRSF001336 PRINTS:PR01179 PRINTS:PR01180 Prosite:PS00879
Prosite:PS00878 GO:GO:0009737 GO:GO:0009753 GO:GO:0006979
GO:GO:0009611 GO:GO:0009651 EMBL:AP008212 GO:GO:0009409
GO:GO:0080167 GO:GO:0048316 KO:K01583 GO:GO:0008792
Gene3D:2.40.37.10 InterPro:IPR022653 GO:GO:0006527 GO:GO:0009446
GO:GO:0008295 eggNOG:COG1166 HOGENOM:HOG000029191
ProtClustDB:PLN02439 UniPathway:UPA00186 PANTHER:PTHR11482:SF3
TIGRFAMs:TIGR01273 EMBL:AY604047 EMBL:EU220429 EMBL:AP000559
RefSeq:NP_001056695.1 UniGene:Os.75600 ProteinModelPortal:Q9SNN0
STRING:Q9SNN0 EnsemblPlants:LOC_Os06g04070.1 GeneID:4340008
KEGG:dosa:Os06t0131300-00 KEGG:osa:4340008 Gramene:Q9SNN0
OMA:MIHFHIG Uniprot:Q9SNN0
Length = 702
Score = 1293 (460.2 bits), Expect = 2.6e-195, Sum P(2) = 2.6e-195
Identities = 250/395 (63%), Positives = 306/395 (77%)
Query: 72 LYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLI 131
LY +D WGAPYF VN G+V+VRP+G ATL QEIDL K+V K + P+S GGLGL LPL+
Sbjct: 54 LYNVDGWGAPYFFVNDDGDVAVRPHGAATLPGQEIDLAKVVAKAAGPRSGGGLGLPLPLL 113
Query: 132 VRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGL 191
VR PDVLR R+E+L++AF++A+++ GY RYQGV+PVKCNQDR VVEDIV+FG FRFGL
Sbjct: 114 VRFPDVLRHRVEALNAAFDYAVRSTGYGGRYQGVYPVKCNQDRHVVEDIVEFGEPFRFGL 173
Query: 192 EAGSKPELLLAMSCLC-KGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVD 250
EAGSKPELLLAMSCL +G+P+ALL+CNG+KD Y++LAL+AR + LN VIVLEQEEE+D
Sbjct: 174 EAGSKPELLLAMSCLAARGNPDALLICNGYKDDEYVSLALIARTMGLNTVIVLEQEEELD 233
Query: 251 LVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLD 310
+V++ S++L VRPV+G RAKLRTKH+GHFGSTSGEKGKFGL QIL VV KL+ MLD
Sbjct: 234 IVVDASRRLGVRPVVGMRAKLRTKHAGHFGSTSGEKGKFGLNAAQILSVVAKLKTLGMLD 293
Query: 311 CFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSAD 370
C QLLHFHIGSQIP+TALL DGVGEAAQIYCEL RLGA M+V S SA
Sbjct: 294 CLQLLHFHIGSQIPTTALLGDGVGEAAQIYCELARLGAAMRVIDVGGGLGIDYDGSHSAQ 353
Query: 371 SDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEXXXXXXXX 430
+D+SVAY+LEEYA+AVV A+ VCDRK V HP++CSESGRA+VSHHS+L+FE
Sbjct: 354 TDMSVAYSLEEYAAAVVAAVGRVCDRKGVAHPIICSESGRALVSHHSVLVFEAFSASAPG 413
Query: 431 XXXXXMSPLGLQYLVEGLTEDARSDYTKMTTAALR 465
+ P YL++ LT+D +DY + AA+R
Sbjct: 414 R----IDP-ATGYLLDELTDDCHADYRNLMAAAVR 443
Score = 621 (223.7 bits), Expect = 2.6e-195, Sum P(2) = 2.6e-195
Identities = 118/160 (73%), Positives = 132/160 (82%)
Query: 466 AMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDG 525
A +GA++P RTYH+NLS+FTS+PD WAIGQ+FPI+PI L ERP V GVLSDLTCDSDG
Sbjct: 485 ARGMGAAEPPRTYHINLSVFTSLPDMWAIGQMFPIIPIQRLGERPAVDGVLSDLTCDSDG 544
Query: 526 KIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQS 585
K+D FIGG SLPLHE+ G RG YYLGMFLGGAY+EALGG+HNLFGGPSVVRV QS
Sbjct: 545 KVDHFIGGRHSLPLHELPVHGT--RG-YYLGMFLGGAYQEALGGLHNLFGGPSVVRVSQS 601
Query: 586 DGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAE 625
DGPH FAVTRA GPSC DVLR MQHEPE+MFE LK R +
Sbjct: 602 DGPHCFAVTRAAAGPSCADVLRSMQHEPEVMFEVLKQRTD 641
>TIGR_CMR|SPO_0602 [details] [associations]
symbol:SPO_0602 "arginine decarboxylase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006596 "polyamine biosynthetic
process" evidence=ISS] [GO:0008792 "arginine decarboxylase
activity" evidence=ISS] InterPro:IPR000183 InterPro:IPR002985
InterPro:IPR009006 InterPro:IPR022643 InterPro:IPR022644
Pfam:PF00278 Pfam:PF02784 PIRSF:PIRSF001336 PRINTS:PR01179
PRINTS:PR01180 Prosite:PS00878 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0008792
Gene3D:2.40.37.10 InterPro:IPR022653 GO:GO:0006527 GO:GO:0008295
HOGENOM:HOG000029191 PANTHER:PTHR11482:SF3 TIGRFAMs:TIGR01273
OMA:MIHFHIG KO:K01585 ProtClustDB:PRK05354 RefSeq:YP_165862.1
ProteinModelPortal:Q5LVU3 DNASU:3193886 GeneID:3193886
KEGG:sil:SPO0602 PATRIC:23374471 Uniprot:Q5LVU3
Length = 661
Score = 611 (220.1 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
Identities = 127/350 (36%), Positives = 203/350 (58%)
Query: 72 LYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLI 131
+Y +D WG V G + ++ E D + + + D + G++ P+I
Sbjct: 43 VYGVDKWGKGLIVVTEEGEIGLK-----NPLRPEADAVSLPGILHDLEQ---RGIRAPMI 94
Query: 132 VRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGL 191
+R+ L + + ++ +F AI GY+ Y+GVFP+K NQ V++ IV+FG ++ +GL
Sbjct: 95 LRISSYLENEICHINDSFADAIARSGYKGAYRGVFPIKVNQQAQVIDRIVEFGHRYSYGL 154
Query: 192 EAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDL 251
EAGSKPEL++A++ K + +AL+VCNG KDA ++ LA+L+RKL N VIVLE +E D
Sbjct: 155 EAGSKPELVIALAH--KLATDALIVCNGVKDAEFVRLAILSRKLGFNTVIVLESPKEADT 212
Query: 252 VIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDC 311
VI + ++L + P++G R KL + SG + +SG++ FG+ T Q++RVV KL A ++ C
Sbjct: 213 VIAVYEELGIEPLLGVRVKLTNQISGKWEESSGDRSSFGMNTDQLVRVVDKLRDAGLIHC 272
Query: 312 FQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSADS 371
+L H H+GSQ+P + VGEA + + EL G + K A
Sbjct: 273 LKLQHSHLGSQVPDVNDVRRAVGEACRYFTELSAEGVPLTHLDLGGGMGVDYTGEKRATE 332
Query: 372 DLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIF 421
+ S+ YT+EEY + VV+ + Y D + HP + +ESGRA+V+ S+L+F
Sbjct: 333 N-SINYTVEEYCANVVETVAYAMDEAGIDHPTIVTESGRAVVATSSLLVF 381
Score = 320 (117.7 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
Identities = 67/140 (47%), Positives = 90/140 (64%)
Query: 478 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFI---GGG 534
YH N S+F S+PD WAI QL PIVP+ L+E P R VLSD+TCDSDGK+D+FI G
Sbjct: 486 YHCNFSLFQSLPDVWAIDQLHPIVPLQMLNEAPDRRAVLSDITCDSDGKVDRFILADGVS 545
Query: 535 TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV-LQSDGPHSFAV 593
SLP+H + E YYLG+F GAY+E LG +HNLFG +VV + L++DG F +
Sbjct: 546 PSLPVHSLP-----EDQDYYLGVFFVGAYQETLGDLHNLFGDTNVVTIDLRADG--GFDL 598
Query: 594 TRAMPGPSCGDVLRVMQHEP 613
G + +VL ++++P
Sbjct: 599 LHEQEGDTISEVLSYVEYDP 618
>TIGR_CMR|GSU_2537 [details] [associations]
symbol:GSU_2537 "biosynthetic arginine decarboxylase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006596
"polyamine biosynthetic process" evidence=ISS] [GO:0008792
"arginine decarboxylase activity" evidence=ISS] HAMAP:MF_01417
InterPro:IPR000183 InterPro:IPR002985 InterPro:IPR009006
InterPro:IPR022643 InterPro:IPR022644 Pfam:PF00278 Pfam:PF02784
PIRSF:PIRSF001336 PRINTS:PR01179 PRINTS:PR01180 Prosite:PS00879
Prosite:PS00878 GO:GO:0046872 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0008792 InterPro:IPR022657
InterPro:IPR022653 SUPFAM:SSF50621 GO:GO:0006527 GO:GO:0008295
eggNOG:COG1166 HOGENOM:HOG000029191 UniPathway:UPA00186
PANTHER:PTHR11482:SF3 TIGRFAMs:TIGR01273 OMA:MIHFHIG KO:K01585
ProtClustDB:PRK05354 RefSeq:NP_953583.1 ProteinModelPortal:A0A4W3
GeneID:2687789 KEGG:gsu:GSU2537 PATRIC:22027923
BioCyc:GSUL243231:GH27-2513-MONOMER Uniprot:A0A4W3
Length = 635
Score = 605 (218.0 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
Identities = 132/350 (37%), Positives = 204/350 (58%)
Query: 72 LYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLI 131
+Y + +WGA F++N GNV V P T H IDL +V + K ++ P++
Sbjct: 12 IYNLPNWGADLFSINKKGNVCVHP--SPTSKHS-IDLRALVDDLIKRK------IKPPIL 62
Query: 132 VRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGL 191
+R DVL+ R+ S++ F+ AI Y A YQ +P+K NQ R VVE I KFG ++ GL
Sbjct: 63 LRFMDVLQGRIASINRVFKNAIDENDYPATYQTFYPIKVNQQRQVVEAIAKFGKRYNIGL 122
Query: 192 EAGSKPELLLAMSCLC-KGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVD 250
E GSKPEL++ +S G P ++CNG+KD YI L A K+ ++ IV+E+ E++
Sbjct: 123 EVGSKPELVIGISFATGNGIP---IICNGYKDTEYIETVLYATKIGYDITIVVEKMFELE 179
Query: 251 LVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLD 310
+I +SKK ++P +G R KL +K +G + ++ GE KFGL ++I+ + LE ++LD
Sbjct: 180 KIIALSKKTGIKPKLGIRVKLSSKGTGKWATSGGEDAKFGLRMSEIIAAIGLLEQNDLLD 239
Query: 311 CFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSAD 370
+LLHFHIGSQI + + E +IY E+ +LG ++ SKS+
Sbjct: 240 RVKLLHFHIGSQITKIDKIKSALIEGTRIYAEMRKLGVGIRYVDIGGGLGVDYDGSKSSY 299
Query: 371 SDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI 420
SV Y++EEYA+ V+ I+ +C+ V+ P + SESGRA +H+S+L+
Sbjct: 300 FS-SVNYSIEEYANDVIYQIKNICEDAGVECPNIISESGRATAAHYSVLV 348
Score = 287 (106.1 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
Identities = 62/145 (42%), Positives = 91/145 (62%)
Query: 476 RTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIG--G 533
+TY N S+F SIPD WAI QLFPIVPI L+++P V ++D+TCDSDG+I F+G G
Sbjct: 457 QTYFANFSLFQSIPDSWAIDQLFPIVPIQRLNQKPDVMASIADITCDSDGEITSFVGENG 516
Query: 534 GTS-LPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFA 592
T LPLH+M + Y++G FL GAY+E LG +HNLFG + V V + +
Sbjct: 517 RTKYLPLHKM-----RKDEDYFVGFFLIGAYQEILGDMHNLFGDTNAVHVTFNKKT-GYK 570
Query: 593 VTRAMPGPSCGDVLRVMQHE-PELM 616
+ + G + + L+ +Q++ PE++
Sbjct: 571 IDTVIHGDATWESLKYVQYKGPEIL 595
>UNIPROTKB|P21170 [details] [associations]
symbol:speA "SpeA" species:83333 "Escherichia coli K-12"
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0042597
"periplasmic space" evidence=IEA] [GO:0009446 "putrescine
biosynthetic process" evidence=IEA;IDA] [GO:0008295 "spermidine
biosynthetic process" evidence=IEA] [GO:0006527 "arginine catabolic
process" evidence=IEA;IDA] [GO:0008792 "arginine decarboxylase
activity" evidence=IEA;IDA] HAMAP:MF_01417 InterPro:IPR000183
InterPro:IPR002985 InterPro:IPR009006 InterPro:IPR022643
InterPro:IPR022644 Pfam:PF00278 Pfam:PF02784 PIRSF:PIRSF001336
PRINTS:PR01179 PRINTS:PR01180 Prosite:PS00879 Prosite:PS00878
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 EMBL:U28377 GO:GO:0008792
Gene3D:2.40.37.10 InterPro:IPR022657 InterPro:IPR022653
SUPFAM:SSF50621 GO:GO:0006527 GO:GO:0042597 GO:GO:0009446
GO:GO:0008295 EMBL:M31770 eggNOG:COG1166 HOGENOM:HOG000029191
UniPathway:UPA00186 PANTHER:PTHR11482:SF3 TIGRFAMs:TIGR01273
OMA:MIHFHIG EMBL:M32363 PIR:A65079 RefSeq:NP_417413.1
RefSeq:YP_491137.1 PDB:3NZQ PDBsum:3NZQ ProteinModelPortal:P21170
SMR:P21170 DIP:DIP-10905N DIP:DIP-307N IntAct:P21170 PaxDb:P21170
PRIDE:P21170 EnsemblBacteria:EBESCT00000003092
EnsemblBacteria:EBESCT00000016415 GeneID:12933352 GeneID:947432
KEGG:ecj:Y75_p2868 KEGG:eco:b2938 PATRIC:32121288 EchoBASE:EB0952
EcoGene:EG10959 KO:K01585 ProtClustDB:PRK05354
BioCyc:EcoCyc:ARGDECARBOXBIO-MONOMER
BioCyc:ECOL316407:JW2905-MONOMER
BioCyc:MetaCyc:ARGDECARBOXBIO-MONOMER SABIO-RK:P21170
EvolutionaryTrace:P21170 Genevestigator:P21170 Uniprot:P21170
Length = 658
Score = 618 (222.6 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 134/348 (38%), Positives = 207/348 (59%)
Query: 73 YKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIV 132
Y I WG Y+ VN G++SV P + +DL ++VK G +LP +
Sbjct: 39 YNIAWWGNNYYDVNELGHISVCP--DPDVPEARVDLAQLVKTRE------AQGQRLPALF 90
Query: 133 RLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLE 192
P +L+ RL S+++AF+ A ++ GY Y V+P+K NQ R V+E ++ G GLE
Sbjct: 91 CFPQILQHRLRSINAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPL--GLE 148
Query: 193 AGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLV 252
AGSK EL+ ++ G +++VCNG+KD YI LAL+ K+ V +V+E+ E+ +V
Sbjct: 149 AGSKAELMAVLAHA--GMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIV 206
Query: 253 IEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCF 312
++ +++LNV P +G RA+L ++ SG + S+ GEK KFGL TQ+L++V+ L A LD
Sbjct: 207 LDEAERLNVVPRLGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDSL 266
Query: 313 QLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSADSD 372
QLLHFH+GSQ+ + + GV E+A+ Y EL +LG N+Q ++S SD
Sbjct: 267 QLLHFHLGSQMANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRS-QSD 325
Query: 373 LSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI 420
SV Y L EYA+ ++ AI C+ + HP + +ESGRA+ +HH++L+
Sbjct: 326 CSVNYGLNEYANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLV 373
Score = 266 (98.7 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 60/152 (39%), Positives = 87/152 (57%)
Query: 479 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GT 535
+VN S+F S+PD W I QLFP++P+ LD+ P R VL D+TCDSDG ID +I G T
Sbjct: 486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIAT 545
Query: 536 SLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQ-SDGPHSFAVT 594
++P+ E P LG F+ GAY+E LG +HNLFG V V DG S V
Sbjct: 546 TMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDVFVFPDG--SVEVE 598
Query: 595 RAMPGPSCGDVLRVMQHEPELMFETLKHRAEE 626
+ G + D+L+ +Q +P+ + + + ++
Sbjct: 599 LSDEGDTVADMLQYVQLDPKTLLTQFRDQVKK 630
>TIGR_CMR|SO_1870 [details] [associations]
symbol:SO_1870 "biosynthetic arginine decarboxylase"
species:211586 "Shewanella oneidensis MR-1" [GO:0006596 "polyamine
biosynthetic process" evidence=ISS] [GO:0008792 "arginine
decarboxylase activity" evidence=ISS] HAMAP:MF_01417
InterPro:IPR000183 InterPro:IPR002985 InterPro:IPR009006
InterPro:IPR022643 InterPro:IPR022644 Pfam:PF00278 Pfam:PF02784
PIRSF:PIRSF001336 PRINTS:PR01179 PRINTS:PR01180 Prosite:PS00879
Prosite:PS00878 GO:GO:0046872 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0008792 Gene3D:2.40.37.10
GO:GO:0006527 GO:GO:0008295 eggNOG:COG1166 HOGENOM:HOG000029191
PANTHER:PTHR11482:SF3 TIGRFAMs:TIGR01273 OMA:MIHFHIG KO:K01585
ProtClustDB:PRK05354 RefSeq:NP_717478.1 ProteinModelPortal:Q8EFU5
GeneID:1169637 KEGG:son:SO_1870 PATRIC:23523379 Uniprot:Q8EFU5
Length = 637
Score = 599 (215.9 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
Identities = 137/351 (39%), Positives = 207/351 (58%)
Query: 73 YKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIV 132
Y + W ++ ++ G V+V P +I L ++ K + K+ G+ LP++V
Sbjct: 13 YNVTHWSQGFYGISDEGEVTVSP--DPKNPDHKIGLNELAKDMV--KA----GVALPVLV 64
Query: 133 RLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQF---RF 189
R P +L R+ SL AF+ AIQ Y+A Y V+P+K NQ + VVE+I+ + +
Sbjct: 65 RFPQILHHRVNSLCQAFDQAIQKYEYQADYLLVYPIKVNQQKTVVEEILASQASKEVPQL 124
Query: 190 GLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEV 249
GLEAGSKPEL+ ++ K S +++VCNG+KD YI LAL+ KL V IVLE+ E+
Sbjct: 125 GLEAGSKPELMAVLAMAQKAS--SVIVCNGYKDNEYIRLALIGEKLGHKVYIVLEKLSEL 182
Query: 250 DLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEML 309
+V+ SK+L V+P +G RA+L + G + ++ GEK KFGL+ QIL VV +L+ ++ML
Sbjct: 183 KMVLAESKRLGVKPRLGLRARLAFQGKGKWQASGGEKSKFGLSAAQILTVVDQLKQSDML 242
Query: 310 DCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSA 369
D QLLHFH+GSQI + + GV EAA+ YCEL LGA++ ++S
Sbjct: 243 DSLQLLHFHLGSQIANIRDIRQGVSEAARFYCELRELGASINCFDVGGGLAVDYDGTRS- 301
Query: 370 DSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI 420
S+ S+ Y L EYA+ +V + +C+ P + SESGR + +HH++LI
Sbjct: 302 QSNNSMNYGLSEYANNIVNVLTDICNEYEQPMPRIISESGRHLTAHHAVLI 352
Score = 255 (94.8 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
Identities = 62/158 (39%), Positives = 94/158 (59%)
Query: 478 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG-G-- 534
+ VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G G
Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIE 523
Query: 535 TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGP-SVVRVLQSDGPHSFAV 593
T+LP V E PY +G F+ GAY+E LG +HNLFG S V ++ +G + +
Sbjct: 524 TTLP----VPAWSAE-SPYLIGFFMVGAYQEILGDMHNLFGDTNSAVVSIEENGMTN--I 576
Query: 594 TRAMPGPSCGDVLRVMQHEP-ELM--FETL--KHRAEE 626
+ G + DVLR + + + M +E L +H AE+
Sbjct: 577 ESVLAGDTVADVLRYVNLDAVDFMRTYEELVNQHIAED 614
>UNIPROTKB|Q9KLD1 [details] [associations]
symbol:speA "Biosynthetic arginine decarboxylase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006596 "polyamine biosynthetic process" evidence=ISS]
[GO:0008792 "arginine decarboxylase activity" evidence=ISS]
HAMAP:MF_01417 InterPro:IPR000183 InterPro:IPR002985
InterPro:IPR009006 InterPro:IPR022643 InterPro:IPR022644
Pfam:PF00278 Pfam:PF02784 PIRSF:PIRSF001336 PRINTS:PR01179
PRINTS:PR01180 Prosite:PS00879 Prosite:PS00878 GO:GO:0046872
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0006596 GO:GO:0008792
Gene3D:2.40.37.10 GO:GO:0006527 GO:GO:0008295 eggNOG:COG1166
PANTHER:PTHR11482:SF3 TIGRFAMs:TIGR01273 OMA:MIHFHIG KO:K01585
ProtClustDB:PRK05354 PIR:E82414 RefSeq:NP_233201.1
ProteinModelPortal:Q9KLD1 DNASU:2611850 GeneID:2611850
KEGG:vch:VCA0815 PATRIC:20086176 Uniprot:Q9KLD1
Length = 640
Score = 600 (216.3 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 133/351 (37%), Positives = 204/351 (58%)
Query: 73 YKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIV 132
Y + W +F ++ G V V P AHQ L IVK++ L LP++V
Sbjct: 18 YNVHYWSQGFFGIDDQGEVYVSP--RKDKAHQT-QLSSIVKQLE------ARDLNLPVLV 68
Query: 133 RLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQF---RF 189
R P +L R+ ++ AF AI+ Y +Y V+P+K NQ + VV++I+ ++ +
Sbjct: 69 RFPQILHQRVHNICDAFNQAIEEYDYPNKYLLVYPIKVNQQKEVVDEILASQAELEHKQL 128
Query: 190 GLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEV 249
GLEAGSKPELL ++ + S +++VCNG+KD YI LAL+ KL V IVLE+ E+
Sbjct: 129 GLEAGSKPELLAVLAMAQQAS--SVIVCNGYKDREYIRLALIGEKLGHKVFIVLEKLSEL 186
Query: 250 DLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEML 309
DLV++ +K L V+P +G R +L ++ +G + S+ GEK KFGL +Q+L V+ +L+ L
Sbjct: 187 DLVLKEAKSLGVKPRLGLRIRLASQGAGKWQSSGGEKSKFGLAASQVLTVINRLKAENQL 246
Query: 310 DCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSA 369
+ QL+HFH+GSQ+ + + +GV EA + YCEL LGA++ ++S
Sbjct: 247 EALQLVHFHLGSQMANIRDVRNGVNEAVRFYCELRELGAHIDFFDVGGGLAVDYDGTRSQ 306
Query: 370 DSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI 420
S+ S+ Y L EYA +V + VC+ PV+ SESGR+I +HH++LI
Sbjct: 307 SSN-SMNYGLHEYARNIVSTVSDVCNLYGQPRPVIISESGRSITAHHAVLI 356
Score = 229 (85.7 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 51/132 (38%), Positives = 76/132 (57%)
Query: 478 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG-GTS 536
+ VN S+F S+PD W I Q+FP++P+ L+E R V+ D+TCDSDG +++++ G G
Sbjct: 468 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLEEMNDRRAVMLDITCDSDGAVEQYVEGQGIE 527
Query: 537 LPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGP-SVVRVLQSDGPHSFAVTR 595
L V ++ PY +G FL GAY+E LG +HNLFG S V + +G A
Sbjct: 528 STLP--VPAWTSDK-PYLMGFFLVGAYQEILGDMHNLFGDTHSAVVNINDNGESEIAFIN 584
Query: 596 AMPGPSCGDVLR 607
G + D++R
Sbjct: 585 E--GDTVEDMMR 594
>TIGR_CMR|VC_A0815 [details] [associations]
symbol:VC_A0815 "biosynthetic arginine decarboxylase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006596
"polyamine biosynthetic process" evidence=ISS] [GO:0008792
"arginine decarboxylase activity" evidence=ISS] HAMAP:MF_01417
InterPro:IPR000183 InterPro:IPR002985 InterPro:IPR009006
InterPro:IPR022643 InterPro:IPR022644 Pfam:PF00278 Pfam:PF02784
PIRSF:PIRSF001336 PRINTS:PR01179 PRINTS:PR01180 Prosite:PS00879
Prosite:PS00878 GO:GO:0046872 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0006596 GO:GO:0008792
Gene3D:2.40.37.10 GO:GO:0006527 GO:GO:0008295 eggNOG:COG1166
PANTHER:PTHR11482:SF3 TIGRFAMs:TIGR01273 OMA:MIHFHIG KO:K01585
ProtClustDB:PRK05354 PIR:E82414 RefSeq:NP_233201.1
ProteinModelPortal:Q9KLD1 DNASU:2611850 GeneID:2611850
KEGG:vch:VCA0815 PATRIC:20086176 Uniprot:Q9KLD1
Length = 640
Score = 600 (216.3 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 133/351 (37%), Positives = 204/351 (58%)
Query: 73 YKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIV 132
Y + W +F ++ G V V P AHQ L IVK++ L LP++V
Sbjct: 18 YNVHYWSQGFFGIDDQGEVYVSP--RKDKAHQT-QLSSIVKQLE------ARDLNLPVLV 68
Query: 133 RLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQF---RF 189
R P +L R+ ++ AF AI+ Y +Y V+P+K NQ + VV++I+ ++ +
Sbjct: 69 RFPQILHQRVHNICDAFNQAIEEYDYPNKYLLVYPIKVNQQKEVVDEILASQAELEHKQL 128
Query: 190 GLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEV 249
GLEAGSKPELL ++ + S +++VCNG+KD YI LAL+ KL V IVLE+ E+
Sbjct: 129 GLEAGSKPELLAVLAMAQQAS--SVIVCNGYKDREYIRLALIGEKLGHKVFIVLEKLSEL 186
Query: 250 DLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEML 309
DLV++ +K L V+P +G R +L ++ +G + S+ GEK KFGL +Q+L V+ +L+ L
Sbjct: 187 DLVLKEAKSLGVKPRLGLRIRLASQGAGKWQSSGGEKSKFGLAASQVLTVINRLKAENQL 246
Query: 310 DCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSA 369
+ QL+HFH+GSQ+ + + +GV EA + YCEL LGA++ ++S
Sbjct: 247 EALQLVHFHLGSQMANIRDVRNGVNEAVRFYCELRELGAHIDFFDVGGGLAVDYDGTRSQ 306
Query: 370 DSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI 420
S+ S+ Y L EYA +V + VC+ PV+ SESGR+I +HH++LI
Sbjct: 307 SSN-SMNYGLHEYARNIVSTVSDVCNLYGQPRPVIISESGRSITAHHAVLI 356
Score = 229 (85.7 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 51/132 (38%), Positives = 76/132 (57%)
Query: 478 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG-GTS 536
+ VN S+F S+PD W I Q+FP++P+ L+E R V+ D+TCDSDG +++++ G G
Sbjct: 468 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLEEMNDRRAVMLDITCDSDGAVEQYVEGQGIE 527
Query: 537 LPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGP-SVVRVLQSDGPHSFAVTR 595
L V ++ PY +G FL GAY+E LG +HNLFG S V + +G A
Sbjct: 528 STLP--VPAWTSDK-PYLMGFFLVGAYQEILGDMHNLFGDTHSAVVNINDNGESEIAFIN 584
Query: 596 AMPGPSCGDVLR 607
G + D++R
Sbjct: 585 E--GDTVEDMMR 594
>TIGR_CMR|CJE_0855 [details] [associations]
symbol:CJE_0855 "arginine decarboxylase" species:195099
"Campylobacter jejuni RM1221" [GO:0006596 "polyamine biosynthetic
process" evidence=ISS] [GO:0008792 "arginine decarboxylase
activity" evidence=ISS] InterPro:IPR000183 InterPro:IPR002985
InterPro:IPR009006 InterPro:IPR022643 InterPro:IPR022644
Pfam:PF00278 Pfam:PF02784 PIRSF:PIRSF001336 PRINTS:PR01179
PRINTS:PR01180 Prosite:PS00878 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0008792 Gene3D:2.40.37.10
InterPro:IPR022653 SUPFAM:SSF50621 GO:GO:0006527 GO:GO:0008295
eggNOG:COG1166 HOGENOM:HOG000029191 PANTHER:PTHR11482:SF3
TIGRFAMs:TIGR01273 OMA:MIHFHIG KO:K01585 ProtClustDB:PRK05354
RefSeq:YP_178857.1 ProteinModelPortal:Q5HV28 STRING:Q5HV28
GeneID:3231368 KEGG:cjr:CJE0855 PATRIC:20043477
BioCyc:CJEJ195099:GJC0-875-MONOMER Uniprot:Q5HV28
Length = 611
Score = 474 (171.9 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 113/350 (32%), Positives = 195/350 (55%)
Query: 73 YKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIV 132
Y ID WG F + +G V + Y ++ ++ IVK++ D G + PL++
Sbjct: 4 YGIDIWGNENFIIK-NGKVCIN-Y------EKKPAIIDIVKELRDD------GYKGPLLL 49
Query: 133 RLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLE 192
R P +++ ++E+++ F A + GY+ + V+P+K NQ V+++VK G + +GLE
Sbjct: 50 RFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLE 109
Query: 193 AGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLV 252
AGSK ELLLAM+ +G+P + NGFKD I + +A ++ N+ + +E E++ +
Sbjct: 110 AGSKAELLLAMAYNNEGAP---ITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAI 166
Query: 253 IEISK-KLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDC 311
I+I+K + +P IG R +L + G + + G KFGLT+T+++ V L+ ++L+
Sbjct: 167 IDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQ 226
Query: 312 FQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGA-NMQVXXXXXXXXXXXXXSKSAD 370
F ++HFH+GSQI L + EA IY EL ++GA N++ K+
Sbjct: 227 FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKN-- 284
Query: 371 SDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI 420
+ S YTL EYA+ VV ++ + ++K P + ESGR + ++H++LI
Sbjct: 285 -EKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLI 333
Score = 219 (82.2 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 55/156 (35%), Positives = 80/156 (51%)
Query: 469 IGASDPVRT-YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKI 527
+ D V+ Y VN S+F S+PD+W + Q FPI+P+ LDE P + D+TCDSDG+I
Sbjct: 430 LAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEI 489
Query: 528 DKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDG 587
L LH++ E+ Y+LG FL GAY+E LG HNLF P+ + S
Sbjct: 490 S--YSKDKPLFLHDVDV----EKENYFLGFFLVGAYQEVLGMKHNLFTHPT--EAIISIN 541
Query: 588 PHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHR 623
+ V + S D L + ++ + + L R
Sbjct: 542 EKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNER 577
>TIGR_CMR|BA_1438 [details] [associations]
symbol:BA_1438 "diaminopimelate decarboxylase"
species:198094 "Bacillus anthracis str. Ames" [GO:0008836
"diaminopimelate decarboxylase activity" evidence=ISS] [GO:0009089
"lysine biosynthetic process via diaminopimelate" evidence=ISS]
HAMAP:MF_02120 InterPro:IPR000183 InterPro:IPR002986
InterPro:IPR009006 InterPro:IPR022643 InterPro:IPR022644
Pfam:PF00278 Pfam:PF02784 PRINTS:PR01179 PRINTS:PR01181
UniPathway:UPA00034 GO:GO:0030170 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:2.40.37.10 SUPFAM:SSF50621
GO:GO:0009089 GO:GO:0008836 KO:K01586 OMA:QGIDCHI
TIGRFAMs:TIGR01048 HOGENOM:HOG000045071 RefSeq:NP_843894.1
RefSeq:YP_018062.1 RefSeq:YP_027598.1 HSSP:P31848
ProteinModelPortal:Q81T51 DNASU:1086460
EnsemblBacteria:EBBACT00000011158 EnsemblBacteria:EBBACT00000014589
EnsemblBacteria:EBBACT00000021028 GeneID:1086460 GeneID:2815709
GeneID:2852728 KEGG:ban:BA_1438 KEGG:bar:GBAA_1438 KEGG:bat:BAS1329
ProtClustDB:CLSK916235 BioCyc:BANT260799:GJAJ-1403-MONOMER
BioCyc:BANT261594:GJ7F-1466-MONOMER Uniprot:Q81T51
Length = 438
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 73/271 (26%), Positives = 111/271 (40%)
Query: 148 AFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLC 207
AF A + G+ YQ + K F+ ++ + + L+ S EL A+
Sbjct: 47 AFHRAFKESGFS--YQVAYASKA----FLCMEMCRVAREENMSLDVVSGGELYTALQA-- 98
Query: 208 KGSPEALLVCNGF-KDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNV--RPV 264
G P + + +G K I +AL A V LE E DL ++ K +N+ R
Sbjct: 99 -GFPASRIHFHGNNKTEEEIVMALQANIGCFVVDNFLELEILHDLAVQHGKFVNILIRVT 157
Query: 265 IGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLL--HFHIGSQ 322
G A H+ + +T + KFG + + ++ +E+A + +L H HIGSQ
Sbjct: 158 PGVEA-----HTHEYITTGQDDSKFGFGVSNG-QAMQAIELALQKSNYNVLGIHSHIGSQ 211
Query: 323 IPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSADSDLSVAYTLEEY 382
I TA + E + E VR N V ++S D+ L TLE Y
Sbjct: 212 IFETAGFVRAI-EVLHQFLEEVRERTNYVVKVLNVGGGFGIRYTES-DTPL----TLETY 265
Query: 383 ASAVVQAIRYVCDRKNVKHPVLCSESGRAIV 413
AV A+R N P + E GR+IV
Sbjct: 266 VRAVTSAVREQFTVCNYPLPEIWVEPGRSIV 296
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 712 610 0.00087 120 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 616 (65 KB)
Total size of DFA: 333 KB (2168 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 45.43u 0.19s 45.62t Elapsed: 00:00:02
Total cpu time: 45.43u 0.19s 45.62t Elapsed: 00:00:02
Start: Sat May 11 15:01:29 2013 End: Sat May 11 15:01:31 2013