BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005135
(712 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NZQ|A Chain A, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
pdb|3NZQ|B Chain B, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
Length = 666
Score = 241 bits (616), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 134/348 (38%), Positives = 208/348 (59%), Gaps = 13/348 (3%)
Query: 73 YKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIV 132
Y I WG Y+ VN G++SV P + +DL ++VK + G +LP +
Sbjct: 39 YNIAWWGNNYYDVNELGHISVCP--DPDVPEARVDLAQLVK------TREAQGQRLPALF 90
Query: 133 RLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLE 192
P +L+ RL S+++AF+ A ++ GY Y V+P+K NQ R V+E ++ G GLE
Sbjct: 91 CFPQILQHRLRSINAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPL--GLE 148
Query: 193 AGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLV 252
AGSK EL+ ++ G +++VCNG+KD YI LAL+ K+ V +V+E+ E+ +V
Sbjct: 149 AGSKAELMAVLAH--AGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIV 206
Query: 253 IEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCF 312
++ +++LNV P +G RA+L ++ SG + S+ GEK KFGL TQ+L++V+ L A LD
Sbjct: 207 LDEAERLNVVPRLGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDSL 266
Query: 313 QLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSADSD 372
QLLHFH+GSQ+ + + GV E+A+ Y EL +LG N+Q ++S SD
Sbjct: 267 QLLHFHLGSQMANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRS-QSD 325
Query: 373 LSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI 420
SV Y L EYA+ ++ AI C+ + HP + +ESGRA+ +HH++L+
Sbjct: 326 CSVNYGLNEYANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLV 373
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 87/152 (57%), Gaps = 11/152 (7%)
Query: 479 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GT 535
+VN S+F S+PD W I QLFP++P+ LD+ P R VL D+TCDSDG ID +I G T
Sbjct: 486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIAT 545
Query: 536 SLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQ-SDGPHSFAVT 594
++P+ E P LG F+ GAY+E LG +HNLFG V V DG S V
Sbjct: 546 TMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDVFVFPDG--SVEVE 598
Query: 595 RAMPGPSCGDVLRVMQHEPELMFETLKHRAEE 626
+ G + D+L+ +Q +P+ + + + ++
Sbjct: 599 LSDEGDTVADMLQYVQLDPKTLLTQFRDQVKK 630
>pdb|3N2O|A Chain A, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|B Chain B, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|C Chain C, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|D Chain D, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
Length = 648
Score = 238 bits (607), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 207/351 (58%), Gaps = 15/351 (4%)
Query: 73 YKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIV 132
Y + W ++ ++ G + V P + AHQ I L KIVK++ + + L +P++V
Sbjct: 18 YNVHYWSQGFYGIDDQGEMYVSP--RSDNAHQ-IQLSKIVKQLEERQ------LNVPVLV 68
Query: 133 RLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQF---RF 189
R P +L R+ S+ AF AI+ Y +Y V+P+K NQ R VV++I+ +Q +
Sbjct: 69 RFPQILHQRVHSICDAFNQAIEEYQYPNKYLLVYPIKVNQQREVVDEILASQAQLETKQL 128
Query: 190 GLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEV 249
GLEAGSKPELL ++ S +++VCNG+KD YI LAL+ KL V IVLE+ E+
Sbjct: 129 GLEAGSKPELLAVLAMAQHAS--SVIVCNGYKDREYIRLALIGEKLGHKVFIVLEKMSEL 186
Query: 250 DLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEML 309
DLV+ +K L V P +G R +L ++ +G + ++ GEK KFGL+ +Q+L V+ +L+ L
Sbjct: 187 DLVLREAKSLGVTPRLGIRIRLASQGAGKWQASGGEKSKFGLSASQVLNVISRLKKENQL 246
Query: 310 DCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSA 369
D QL+HFH+GSQ+ + + +GV E+A+ YCEL LGAN+ ++S
Sbjct: 247 DTLQLVHFHLGSQMANIRDVRNGVNESARFYCELRTLGANITYFDVGGGLAIDYDGTRSQ 306
Query: 370 DSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI 420
S+ S+ Y L EYA +V + VC PV+ SESGR++ +HH++LI
Sbjct: 307 SSN-SMNYGLVEYARNIVNTVGDVCKDYKQPMPVIISESGRSLTAHHAVLI 356
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 8/108 (7%)
Query: 478 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG--- 534
+ VN S+F S+PD W I Q+FP++P+ L R V+ D+TCDSDG ID ++ G
Sbjct: 468 FFVNFSLFQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIE 527
Query: 535 TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 582
++LP+ E PY +G FL GAY+E LG +HNLFG V V
Sbjct: 528 STLPV-----PAWNEDEPYLMGFFLVGAYQEILGDMHNLFGDTHSVVV 570
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
pdb|3NZP|B Chain B, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
Length = 619
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 189/350 (54%), Gaps = 22/350 (6%)
Query: 73 YKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIV 132
Y ID WG F + +G V + ++ ++ IVK++ D G + PL++
Sbjct: 4 YGIDIWGNENFII-KNGKVCIN-------YEKKPAIIDIVKELRDD------GYKGPLLL 49
Query: 133 RLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLE 192
R P +++ ++E+++ F A + GY+ + V+P+K NQ V+++VK G + +GLE
Sbjct: 50 RFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLE 109
Query: 193 AGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLV 252
AGSK ELLLA + +G+P + NGFKD I + +A + N+ + +E E++ +
Sbjct: 110 AGSKAELLLAXAYNNEGAP---ITVNGFKDRELINIGFIAAEXGHNITLTIEGLNELEAI 166
Query: 253 IEISK-KLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDC 311
I+I+K + +P IG R +L + G + + G KFGLT+T+++ V L+ ++L+
Sbjct: 167 IDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQ 226
Query: 312 FQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGA-NMQVXXXXXXXXXXXXXSKSAD 370
F +HFH+GSQI L + EA IY EL + GA N++ K+
Sbjct: 227 FTXIHFHLGSQITEIHPLKKALNEAGNIYTELRKXGAKNLKAINLGGGLAVEYSQFKNEK 286
Query: 371 SDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI 420
S YTL EYA+ VV ++ + ++K P + ESGR + ++H++LI
Sbjct: 287 SR---NYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLI 333
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 74/146 (50%), Gaps = 8/146 (5%)
Query: 478 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSL 537
Y VN S+F S PD+W + Q FPI P+ LDE P + D+TCDSDG+I L
Sbjct: 440 YLVNFSLFQSXPDFWGLEQNFPIXPLDRLDEEPTRSASIWDITCDSDGEIS--YSKDKPL 497
Query: 538 PLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAM 597
LH++ E+ Y+LG FL GAY+E LG HNLF P+ + S + V +
Sbjct: 498 FLHDV----DVEKENYFLGFFLVGAYQEVLGXKHNLFTHPT--EAIISINEKGYEVEGII 551
Query: 598 PGPSCGDVLRVMQHEPELMFETLKHR 623
S D L + ++ + + L R
Sbjct: 552 EAQSILDTLEDLDYDIHAIXDILNER 577
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus
pdb|2P3E|B Chain B, Crystal Structure Of Aq1208 From Aquifex Aeolicus
Length = 420
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 28/227 (12%)
Query: 129 PLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFR 188
PL V + +++R E+ AF A+ + VK N + +V+ + + G+
Sbjct: 35 PLYVYSSNFIKERFEAYRKAFPDALIC----------YAVKANFNPHLVKLLGELGA--- 81
Query: 189 FGLEAGSKPELLLAMSCLCKGSPEALLVCNGF-KDAGYITLALLARKLDLNVVIVLEQEE 247
G + S EL LA G P +V G K +T A+ + L NV E +
Sbjct: 82 -GADIVSGGELYLAKKA---GIPPERIVYAGVGKTEKELTDAVDSEILMFNV----ESRQ 133
Query: 248 EVDLVIEISKKLNVRPVIGARAKLRTKHSGH-FGSTSGEKGKFGLTTTQILRVVKKLEVA 306
E+D++ EI+ KL + I R H + +T +K KFG+ I K+ E A
Sbjct: 134 ELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGV---DIREAQKEYEYA 190
Query: 307 EMLDCFQL--LHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQ 351
L+ ++ +H HIGSQI + + V + +Y L + G +++
Sbjct: 191 SKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIK 237
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 30/198 (15%)
Query: 231 LARKLDLNVVIV-LEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGH-FGSTSGEKGK 288
+ + L LN++ + +E E+ + I++ L ++ I R H + ST ++ K
Sbjct: 117 IEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYLSTGLKENK 176
Query: 289 FGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGA 348
FG+ + L + + + L+ + HFHIGSQ+ + + + A+I L+ LG
Sbjct: 177 FGVGEKEALEMFLWAKKSAFLEPVSV-HFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI 235
Query: 349 NMQVXXXXXXXXXXXXXSKSADSDLSVAYTLEE------YASAVVQAIRYVCDRKNVKHP 402
+++ + V+Y EE YA ++ A++ +
Sbjct: 236 DLRFF--------------DVGGGIGVSYENEETIKLYDYAQGILNALQ------GLDLT 275
Query: 403 VLCSESGRAIVSHHSILI 420
++C E GR+IV+ LI
Sbjct: 276 IIC-EPGRSIVAESGELI 292
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 30/198 (15%)
Query: 231 LARKLDLNVVIV-LEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGH-FGSTSGEKGK 288
+ + L LN++ + +E E+ + I++ L ++ I R H + ST ++ K
Sbjct: 117 IEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENK 176
Query: 289 FGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGA 348
FG+ + L + + + L+ + HFHIGSQ+ + + + A+I L+ LG
Sbjct: 177 FGVGEKEALEMFLWAKKSAFLEPVSV-HFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI 235
Query: 349 NMQVXXXXXXXXXXXXXSKSADSDLSVAYTLEE------YASAVVQAIRYVCDRKNVKHP 402
+++ + V+Y EE YA ++ A++ +
Sbjct: 236 DLRFF--------------DVGGGIGVSYENEETIKLYDYAQGILNALQ------GLDLT 275
Query: 403 VLCSESGRAIVSHHSILI 420
++C E GR+IV+ LI
Sbjct: 276 IIC-EPGRSIVAESGELI 292
>pdb|1HKV|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
pdb|1HKV|B Chain B, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
Length = 453
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 27/200 (13%)
Query: 129 PLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFR 188
PL V D R R +AF Y A+ F+ ++ ++ S+
Sbjct: 41 PLFVIDEDDFRSRCRETAAAFGSGANVH-YAAKA------------FLCSEVARWISEEG 87
Query: 189 FGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEE 248
L+ + EL +A+ PE + + K +T A+ A + VV + + E
Sbjct: 88 LCLDVCTGGELAVALHA--SFPPERITLHGNNKSVSELTAAVKA-GVGHIVVDSMTEIER 144
Query: 249 VDLVIE---ISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQ--ILRVVKKL 303
+D + I + + VR +G A H+ F ST+ E KFGL+ + V+++
Sbjct: 145 LDAIAGEAGIVQDVLVRLTVGVEA-----HTHEFISTAHEDQKFGLSVASGAAMAAVRRV 199
Query: 304 EVAEMLDCFQLLHFHIGSQI 323
+ L L H HIGSQI
Sbjct: 200 FATDHLRLVGL-HSHIGSQI 218
>pdb|2O0T|A Chain A, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|B Chain B, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|C Chain C, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|D Chain D, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
Length = 467
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 175 FVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARK 234
F+ ++ ++ S+ L+ + EL +A+ PE + + K +T A+ A
Sbjct: 76 FLCSEVARWISEEGLCLDVCTGGELAVALHA--SFPPERITLHGNNKSVSELTAAVKA-G 132
Query: 235 LDLNVVIVLEQEEEVDLVIE---ISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGL 291
+ VV + + E +D + I + + VR +G A H+ F ST+ E KFGL
Sbjct: 133 VGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEA-----HTHEFISTAHEDQKFGL 187
Query: 292 TTTQ--ILRVVKKLEVAEMLDCFQLLHFHIGSQI 323
+ + V+++ + L L H HIGSQI
Sbjct: 188 SVASGAAMAAVRRVFATDHLRLVGL-HSHIGSQI 220
>pdb|2FMU|A Chain A, Crystal Structure Of A Tat-Interacting Protein Homologue
(Htatip2, Aw111545, Cc3, Tip30) From Mus Musculus At
2.30 A Resolution
Length = 248
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 484 IFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKID 528
F S+PD WA G P+V + VR +L++L S G+++
Sbjct: 193 FFGSLPDSWASGYAVPVVTV--------VRAMLNNLVSPSSGQME 229
>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
Complex With Sto-609
Length = 298
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 93 VRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFA 152
++P G +QEI +LK L P +V+L +VL D E H F
Sbjct: 74 IQPRGPIEQVYQEIAILK--------------KLDHPNVVKLVEVLDDPNED-HLYMVFE 118
Query: 153 IQTQGYEARYQGVFPVKCNQDRFVVEDIVK 182
+ QG + P+ +Q RF +D++K
Sbjct: 119 LVNQGPVMEVPTLKPLSEDQARFYFQDLIK 148
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 166 FPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGY 225
F VKCN + +V+ + + G F K L L + PE + FK
Sbjct: 54 FAVKCNPEPHLVKLLGELGCGFDCASLNEIKEVLDLGFN------PEDITYSQTFKPYNQ 107
Query: 226 ITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285
+ + A L +N IV D + E+ K P +G ++ + G GE
Sbjct: 108 L---IEASHLGINHTIV-------DSIDEVQKIAKYAPKMGIMIRIMENDTSA-GHVFGE 156
Query: 286 KGKFGLTTTQILRVVKKLEVAEM-LDCFQLLHFHIGSQIPSTALLTDGVGEA 336
K FGL ++ V+K+++ + LD +HFH+GS ++ + T + +A
Sbjct: 157 K--FGLHDDEVEIVLKEIKDKGLNLDG---VHFHVGSDSHNSEVFTKALTKA 203
>pdb|3QTD|A Chain A, Crystal Structure Of Putative Modulator Of Gyrase (Pmba)
From Pseudomonas Aeruginosa Pao1
pdb|3QTD|B Chain B, Crystal Structure Of Putative Modulator Of Gyrase (Pmba)
From Pseudomonas Aeruginosa Pao1
pdb|3QTD|C Chain C, Crystal Structure Of Putative Modulator Of Gyrase (Pmba)
From Pseudomonas Aeruginosa Pao1
pdb|3QTD|D Chain D, Crystal Structure Of Putative Modulator Of Gyrase (Pmba)
From Pseudomonas Aeruginosa Pao1
Length = 449
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 493 AIGQ-LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERG 551
A+GQ LFP +DERP + G L + DSDG + P E GE
Sbjct: 278 ALGQRLFP--EWLSIDERPHLVGALGSASFDSDGLATY------AKPFVE-----NGELV 324
Query: 552 PYYLGMF----LGGAYEEALGGVHNLF 574
Y LG + LG GGVHNLF
Sbjct: 325 SYVLGTYSGRKLGLPSTANAGGVHNLF 351
>pdb|3FH2|A Chain A, The Crystal Structure Of The Probable Atp-Dependent
Protease (Heat Shock Protein) From Corynebacterium
Glutamicum
Length = 146
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 298 RVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANM 350
R K LE++ + + Q+ H +IG++ L+ +G G AAQ+ LV+LGA++
Sbjct: 85 RAKKVLELS-LREGLQMGHKYIGTEFLLLGLIREGEGVAAQV---LVKLGADL 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,868,405
Number of Sequences: 62578
Number of extensions: 742409
Number of successful extensions: 1390
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1370
Number of HSP's gapped (non-prelim): 20
length of query: 712
length of database: 14,973,337
effective HSP length: 106
effective length of query: 606
effective length of database: 8,340,069
effective search space: 5054081814
effective search space used: 5054081814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)